Query 009189
Match_columns 540
No_of_seqs 420 out of 1692
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 20:50:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.7 2.4E-19 8E-24 136.0 1.3 56 285-344 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.7 7E-17 2.4E-21 135.0 7.1 88 128-218 3-93 (94)
3 2ct7_A Ring finger protein 31; 99.3 3E-13 1E-17 110.7 -0.6 77 200-280 4-84 (86)
4 4ap4_A E3 ubiquitin ligase RNF 99.0 1.1E-11 3.6E-16 109.6 -1.9 116 128-303 5-126 (133)
5 2jmo_A Parkin; IBR, E3 ligase, 99.0 7.3E-12 2.5E-16 100.9 -2.8 65 200-268 5-75 (80)
6 3hcs_A TNF receptor-associated 98.8 1.9E-09 6.4E-14 99.7 2.7 84 127-238 15-98 (170)
7 2ecv_A Tripartite motif-contai 98.6 2.7E-08 9.1E-13 80.4 3.5 57 127-189 16-72 (85)
8 3ztg_A E3 ubiquitin-protein li 98.6 3.1E-08 1E-12 81.7 3.7 50 127-186 10-60 (92)
9 2ecw_A Tripartite motif-contai 98.6 6.4E-08 2.2E-12 78.1 5.4 57 127-189 16-72 (85)
10 2yu4_A E3 SUMO-protein ligase 98.5 6.8E-08 2.3E-12 80.1 5.3 57 128-188 5-63 (94)
11 2egp_A Tripartite motif-contai 98.5 8.8E-09 3E-13 82.3 -0.3 57 128-189 10-66 (79)
12 3hct_A TNF receptor-associated 98.5 4.4E-08 1.5E-12 84.8 4.2 84 127-238 15-98 (118)
13 2ct2_A Tripartite motif protei 98.5 4.3E-08 1.5E-12 79.9 3.8 61 128-195 13-75 (88)
14 1t1h_A Gspef-atpub14, armadill 98.5 4.5E-08 1.5E-12 78.1 3.5 51 128-189 6-56 (78)
15 2ysj_A Tripartite motif-contai 98.5 9.7E-08 3.3E-12 72.8 5.1 46 127-179 17-62 (63)
16 2ecy_A TNF receptor-associated 98.5 4.3E-08 1.5E-12 75.6 3.1 52 127-189 12-63 (66)
17 2ysl_A Tripartite motif-contai 98.5 2.9E-08 1E-12 78.0 2.1 54 127-189 17-70 (73)
18 1e4u_A Transcriptional repress 98.5 5.9E-08 2E-12 77.6 3.6 53 128-189 9-63 (78)
19 1rmd_A RAG1; V(D)J recombinati 98.5 6.5E-08 2.2E-12 83.4 4.2 82 129-237 22-103 (116)
20 3knv_A TNF receptor-associated 98.5 2.7E-08 9.3E-13 88.9 0.8 49 127-186 28-76 (141)
21 2kr4_A Ubiquitin conjugation f 98.4 2E-07 6.8E-12 75.8 5.6 51 127-189 11-61 (85)
22 2d8t_A Dactylidin, ring finger 98.4 8.5E-08 2.9E-12 75.1 3.1 53 127-191 12-64 (71)
23 3lrq_A E3 ubiquitin-protein li 98.4 1.1E-07 3.9E-12 79.7 3.7 51 129-190 21-72 (100)
24 2csy_A Zinc finger protein 183 98.4 2.6E-07 8.9E-12 74.2 5.4 48 128-187 13-60 (81)
25 2djb_A Polycomb group ring fin 98.4 2.8E-07 9.5E-12 72.3 5.2 51 127-189 12-63 (72)
26 2yur_A Retinoblastoma-binding 98.4 1.8E-07 6.3E-12 73.8 4.0 50 127-186 12-62 (74)
27 3fl2_A E3 ubiquitin-protein li 98.4 1.9E-07 6.5E-12 81.5 4.5 49 129-188 51-99 (124)
28 3ng2_A RNF4, snurf, ring finge 98.4 5.6E-08 1.9E-12 75.8 0.9 53 128-190 8-65 (71)
29 1jm7_A BRCA1, breast cancer ty 98.4 2.3E-07 8E-12 79.1 4.3 53 129-190 20-72 (112)
30 2y43_A E3 ubiquitin-protein li 98.4 1.6E-07 5.3E-12 78.6 3.0 48 129-188 21-69 (99)
31 2ecm_A Ring finger and CHY zin 98.4 2.6E-07 8.9E-12 68.2 3.8 49 129-187 4-54 (55)
32 4ayc_A E3 ubiquitin-protein li 98.3 1.6E-07 5.5E-12 83.6 3.2 47 129-187 52-98 (138)
33 3l11_A E3 ubiquitin-protein li 98.3 1.1E-07 3.9E-12 81.7 1.8 51 127-188 12-62 (115)
34 1g25_A CDK-activating kinase a 98.3 7.3E-08 2.5E-12 74.0 0.2 54 129-191 2-58 (65)
35 2xeu_A Ring finger protein 4; 98.3 8.2E-08 2.8E-12 73.2 0.5 52 129-190 2-58 (64)
36 2ecj_A Tripartite motif-contai 98.3 3.6E-07 1.2E-11 68.2 3.7 45 128-179 13-57 (58)
37 2ea6_A Ring finger protein 4; 98.3 3.4E-07 1.2E-11 70.8 3.3 51 127-187 12-67 (69)
38 2kiz_A E3 ubiquitin-protein li 98.3 1.4E-06 4.7E-11 67.5 6.3 51 128-188 12-63 (69)
39 2kre_A Ubiquitin conjugation f 98.2 3.5E-07 1.2E-11 76.7 2.6 50 127-188 26-75 (100)
40 1z6u_A NP95-like ring finger p 98.2 6E-07 2.1E-11 81.0 4.3 50 129-189 77-126 (150)
41 2ckl_A Polycomb group ring fin 98.2 5E-07 1.7E-11 76.7 3.5 48 128-187 13-61 (108)
42 1wgm_A Ubiquitin conjugation f 98.2 1.2E-06 4.1E-11 73.2 4.5 51 127-189 19-70 (98)
43 1bor_A Transcription factor PM 98.1 3.3E-07 1.1E-11 68.3 0.4 44 129-187 5-48 (56)
44 2c2l_A CHIP, carboxy terminus 98.1 1.7E-06 5.7E-11 85.8 5.2 52 127-189 205-256 (281)
45 3htk_C E3 SUMO-protein ligase 98.1 1.2E-06 4E-11 85.1 3.8 55 127-189 178-233 (267)
46 1jm7_B BARD1, BRCA1-associated 98.1 2.9E-07 9.9E-12 79.5 -0.6 46 129-188 21-67 (117)
47 1chc_A Equine herpes virus-1 r 98.1 1.5E-06 5.1E-11 67.1 3.4 48 129-187 4-51 (68)
48 1iym_A EL5; ring-H2 finger, ub 98.1 1.1E-06 3.7E-11 64.9 2.2 48 129-186 4-53 (55)
49 2ep4_A Ring finger protein 24; 98.1 3.3E-06 1.1E-10 66.3 5.0 50 128-187 13-63 (74)
50 1v87_A Deltex protein 2; ring- 98.1 2.9E-06 9.8E-11 72.6 4.6 53 130-187 25-93 (114)
51 2l0b_A E3 ubiquitin-protein li 98.1 1.9E-06 6.4E-11 70.9 3.3 51 128-188 38-89 (91)
52 2ckl_B Ubiquitin ligase protei 98.0 2.8E-06 9.7E-11 77.8 4.1 48 129-187 53-101 (165)
53 1x4j_A Ring finger protein 38; 98.0 2.3E-06 7.8E-11 67.5 3.0 51 128-188 21-72 (75)
54 2ecn_A Ring finger protein 141 98.0 1.1E-06 3.7E-11 68.4 1.0 47 128-187 13-59 (70)
55 2f42_A STIP1 homology and U-bo 98.0 3.8E-06 1.3E-10 77.7 4.7 51 128-189 104-154 (179)
56 2ect_A Ring finger protein 126 98.0 2.2E-06 7.5E-11 68.1 2.6 52 128-189 13-65 (78)
57 4ic3_A E3 ubiquitin-protein li 97.9 3.4E-06 1.1E-10 66.5 1.9 43 129-187 23-66 (74)
58 2ecg_A Baculoviral IAP repeat- 97.8 7.5E-06 2.5E-10 64.6 2.4 44 129-188 24-68 (75)
59 2vje_A E3 ubiquitin-protein li 97.7 1.6E-05 5.6E-10 60.7 3.1 49 127-187 5-56 (64)
60 2y1n_A E3 ubiquitin-protein li 97.6 4E-05 1.4E-09 78.9 4.9 48 130-188 332-379 (389)
61 2ecl_A Ring-box protein 2; RNF 97.6 3.9E-05 1.3E-09 61.4 3.8 50 129-188 14-76 (81)
62 2yho_A E3 ubiquitin-protein li 97.6 1.6E-05 5.6E-10 63.4 1.3 44 129-188 17-61 (79)
63 2vje_B MDM4 protein; proto-onc 97.5 4.8E-05 1.6E-09 57.8 3.3 47 129-187 6-55 (63)
64 4ap4_A E3 ubiquitin ligase RNF 97.5 3.3E-05 1.1E-09 67.4 2.5 54 127-190 69-127 (133)
65 2d8s_A Cellular modulator of i 97.4 0.00013 4.6E-09 58.2 4.7 52 128-187 13-69 (80)
66 3dpl_R Ring-box protein 1; ubi 97.3 0.00013 4.5E-09 61.5 4.1 49 129-187 36-100 (106)
67 2ea5_A Cell growth regulator w 97.3 8.5E-05 2.9E-09 57.4 2.7 45 128-188 13-58 (68)
68 2ct7_A Ring finger protein 31; 97.3 5.3E-05 1.8E-09 61.4 1.5 40 290-329 25-65 (86)
69 3t6p_A Baculoviral IAP repeat- 97.0 0.00016 5.3E-09 73.9 0.8 43 129-187 294-337 (345)
70 2jmo_A Parkin; IBR, E3 ligase, 97.0 0.00027 9.4E-09 56.4 2.1 38 290-327 25-70 (80)
71 4a0k_B E3 ubiquitin-protein li 96.7 0.00025 8.6E-09 60.8 0.0 49 129-187 47-111 (117)
72 2bay_A PRE-mRNA splicing facto 96.6 0.0015 5.3E-08 49.1 3.5 48 130-189 3-51 (61)
73 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.0068 2.3E-07 60.9 7.5 121 46-188 242-373 (381)
74 2ct0_A Non-SMC element 1 homol 95.4 0.0087 3E-07 46.8 3.0 50 129-187 14-63 (74)
75 2jun_A Midline-1; B-BOX, TRIM, 95.0 0.0033 1.1E-07 52.1 -0.6 74 243-330 18-95 (101)
76 1v92_A NSFL1 cofactor P47; 3-h 94.3 0.11 3.8E-06 36.2 6.0 39 64-102 5-43 (46)
77 2cs3_A Protein C14ORF4, MY039 94.1 0.18 6.1E-06 39.2 7.2 67 127-196 12-88 (93)
78 3vk6_A E3 ubiquitin-protein li 93.9 0.037 1.3E-06 45.3 3.3 46 132-187 3-48 (101)
79 1vyx_A ORF K3, K3RING; zinc-bi 93.7 0.079 2.7E-06 39.4 4.6 49 129-187 5-58 (60)
80 2jun_A Midline-1; B-BOX, TRIM, 93.5 0.04 1.4E-06 45.4 2.9 33 129-162 2-36 (101)
81 1wd2_A Ariadne-1 protein homol 92.4 0.058 2E-06 40.2 2.2 37 220-260 5-44 (60)
82 2dal_A Protein KIAA0794; FAS a 92.2 0.27 9.1E-06 36.8 5.7 40 63-102 14-53 (62)
83 1wj7_A Hypothetical protein (R 91.0 0.4 1.4E-05 39.5 5.9 48 56-103 21-78 (104)
84 2di0_A Activating signal coint 89.7 0.83 2.8E-05 35.0 6.2 40 63-102 12-52 (71)
85 2dam_A ETEA protein; KIAA0887, 88.9 1 3.5E-05 34.2 6.3 39 64-102 18-57 (67)
86 1fre_A Nuclear factor XNF7; zi 87.8 0.34 1.2E-05 32.8 2.7 32 291-329 4-37 (42)
87 1z96_A DNA-damage, UBA-domain 87.6 0.94 3.2E-05 30.2 4.9 35 65-100 5-39 (40)
88 1g25_A CDK-activating kinase a 87.5 0.23 7.9E-06 37.0 1.9 32 247-303 25-56 (65)
89 2did_A Tripartite motif protei 86.0 0.31 1.1E-05 34.9 1.8 33 291-330 9-43 (53)
90 2yvr_A Transcription intermedi 85.2 0.33 1.1E-05 34.3 1.6 33 291-330 7-41 (50)
91 1e4u_A Transcriptional repress 85.1 0.19 6.3E-06 39.5 0.2 51 222-302 12-62 (78)
92 3e21_A HFAF1, FAS-associated f 85.0 0.73 2.5E-05 32.0 3.2 37 65-101 6-43 (45)
93 3vk6_A E3 ubiquitin-protein li 85.0 0.45 1.5E-05 38.9 2.4 48 223-304 3-51 (101)
94 2yrg_A Tripartite motif-contai 84.7 0.41 1.4E-05 35.3 1.9 33 291-330 15-49 (59)
95 2dzl_A Protein FAM100B; UBA-li 84.6 1.6 5.5E-05 32.9 5.2 37 66-102 19-55 (66)
96 2csv_A Tripartite motif protei 83.5 0.43 1.5E-05 36.6 1.7 33 291-330 19-52 (72)
97 2ecy_A TNF receptor-associated 83.0 0.45 1.5E-05 35.5 1.6 49 221-303 15-63 (66)
98 3nw0_A Non-structural maintena 82.7 0.69 2.3E-05 44.3 3.1 50 129-188 179-229 (238)
99 3ddt_A E3 ubiquitin-protein li 82.0 0.5 1.7E-05 33.1 1.4 33 291-330 7-42 (48)
100 1x4j_A Ring finger protein 38; 81.7 0.64 2.2E-05 35.6 2.0 33 247-305 43-75 (75)
101 4ayc_A E3 ubiquitin-protein li 81.7 0.33 1.1E-05 42.2 0.4 44 223-301 55-98 (138)
102 2dja_A Midline-2; tripartite m 81.5 0.67 2.3E-05 36.5 2.1 35 291-332 19-56 (84)
103 2d8u_A Ubiquitin ligase TRIM63 81.0 0.67 2.3E-05 34.4 1.9 34 291-331 9-45 (64)
104 3fl2_A E3 ubiquitin-protein li 79.9 0.61 2.1E-05 39.6 1.5 45 223-301 54-98 (124)
105 1t1h_A Gspef-atpub14, armadill 79.8 0.73 2.5E-05 35.5 1.8 46 222-301 9-54 (78)
106 1wfh_A Zinc finger (AN1-like) 79.4 0.7 2.4E-05 34.6 1.4 28 290-321 15-42 (64)
107 1pft_A TFIIB, PFTFIIBN; N-term 78.4 1.3 4.3E-05 31.3 2.6 29 289-317 4-34 (50)
108 2ckl_B Ubiquitin ligase protei 78.3 1.3 4.6E-05 39.5 3.3 45 223-301 56-101 (165)
109 2djb_A Polycomb group ring fin 78.1 1.1 3.6E-05 34.0 2.3 34 244-303 29-63 (72)
110 1ify_A HHR23A, UV excision rep 78.1 2.7 9.2E-05 29.6 4.2 37 65-102 9-45 (49)
111 3l11_A E3 ubiquitin-protein li 78.0 0.81 2.8E-05 38.2 1.7 30 247-301 32-61 (115)
112 3lrq_A E3 ubiquitin-protein li 77.3 0.55 1.9E-05 38.4 0.4 30 291-325 23-53 (100)
113 2ect_A Ring finger protein 126 76.6 1.4 4.6E-05 33.9 2.5 30 247-302 35-64 (78)
114 2ecm_A Ring finger and CHY zin 76.4 1.4 4.8E-05 31.1 2.3 11 247-257 26-36 (55)
115 2jrp_A Putative cytoplasmic pr 76.2 1.7 5.8E-05 34.1 2.9 33 291-325 3-41 (81)
116 1wg2_A Zinc finger (AN1-like) 76.2 1 3.5E-05 33.7 1.5 28 290-321 15-42 (64)
117 1bor_A Transcription factor PM 76.1 1.4 4.9E-05 31.6 2.3 27 247-302 23-49 (56)
118 2g3q_A Protein YBL047C; endocy 76.1 4.8 0.00016 27.3 4.9 35 66-101 6-40 (43)
119 1wfl_A Zinc finger protein 216 75.6 1.2 4E-05 34.3 1.7 27 291-321 26-52 (74)
120 3hct_A TNF receptor-associated 75.5 1.6 5.4E-05 36.7 2.8 29 221-258 18-46 (118)
121 2k4x_A 30S ribosomal protein S 75.4 1 3.5E-05 32.7 1.3 28 290-317 18-46 (55)
122 1chc_A Equine herpes virus-1 r 75.1 1.5 5.3E-05 32.5 2.4 29 247-301 23-51 (68)
123 2jr6_A UPF0434 protein NMA0874 74.2 1.8 6.1E-05 32.9 2.5 28 290-317 8-36 (68)
124 3hcs_A TNF receptor-associated 74.0 1.4 4.9E-05 39.5 2.3 32 220-260 17-48 (170)
125 2egm_A Tripartite motif-contai 73.7 0.64 2.2E-05 33.9 -0.1 33 291-330 19-53 (57)
126 1wfp_A Zinc finger (AN1-like) 73.7 1.2 4.2E-05 34.2 1.4 27 290-320 25-51 (74)
127 3j20_Y 30S ribosomal protein S 73.6 1.1 3.7E-05 31.9 1.0 27 289-316 18-46 (50)
128 4ic3_A E3 ubiquitin-protein li 72.8 1.1 3.6E-05 34.5 0.9 26 247-302 41-67 (74)
129 2ysj_A Tripartite motif-contai 72.7 0.86 2.9E-05 33.5 0.4 31 291-326 21-51 (63)
130 1vq8_Z 50S ribosomal protein L 72.5 1.5 5.2E-05 34.7 1.8 34 290-326 27-61 (83)
131 2ep4_A Ring finger protein 24; 72.3 2 6.7E-05 32.6 2.4 31 245-301 33-63 (74)
132 2d8v_A Zinc finger FYVE domain 71.8 2 6.8E-05 32.2 2.1 33 128-163 6-39 (67)
133 1z6u_A NP95-like ring finger p 71.7 2 7E-05 37.8 2.7 27 222-257 79-105 (150)
134 1vg5_A RSGI RUH-014, rhomboid 71.1 6.4 0.00022 30.2 5.0 36 66-102 31-66 (73)
135 2ysl_A Tripartite motif-contai 68.7 1.2 4E-05 33.7 0.4 32 291-327 21-52 (73)
136 2egp_A Tripartite motif-contai 67.5 2.2 7.6E-05 32.6 1.8 31 291-326 13-43 (79)
137 1rmd_A RAG1; V(D)J recombinati 67.2 2.5 8.7E-05 35.1 2.2 26 223-257 25-50 (116)
138 1veg_A NEDD8 ultimate buster-1 67.0 11 0.00038 29.7 5.7 35 67-102 32-66 (83)
139 1v87_A Deltex protein 2; ring- 66.9 2.2 7.5E-05 35.3 1.8 36 247-303 60-95 (114)
140 1jm7_B BARD1, BRCA1-associated 66.3 2.2 7.7E-05 35.6 1.7 30 291-325 23-53 (117)
141 2jne_A Hypothetical protein YF 66.1 3.5 0.00012 33.3 2.6 33 291-325 33-71 (101)
142 2dak_A Ubiquitin carboxyl-term 66.0 9.7 0.00033 28.2 5.0 36 66-102 11-46 (63)
143 2ct2_A Tripartite motif protei 65.6 1.3 4.3E-05 34.8 -0.0 34 291-325 16-49 (88)
144 1wji_A Tudor domain containing 65.2 13 0.00043 27.6 5.5 36 66-102 11-46 (63)
145 2yur_A Retinoblastoma-binding 65.2 1.8 6.1E-05 33.0 0.8 31 291-326 16-47 (74)
146 2ckl_A Polycomb group ring fin 63.6 1.8 6.1E-05 35.6 0.6 31 291-326 16-47 (108)
147 1wff_A Riken cDNA 2810002D23 p 63.6 2.9 9.8E-05 33.1 1.7 28 290-320 25-52 (85)
148 2c2l_A CHIP, carboxy terminus 63.5 4.5 0.00015 38.8 3.5 14 244-257 222-235 (281)
149 2d8t_A Dactylidin, ring finger 63.0 1.8 6.2E-05 32.6 0.4 31 291-326 16-46 (71)
150 3ztg_A E3 ubiquitin-protein li 62.7 1.4 4.9E-05 35.0 -0.3 30 291-325 14-44 (92)
151 1iym_A EL5; ring-H2 finger, ub 62.4 1.9 6.5E-05 30.4 0.4 35 291-327 6-41 (55)
152 3ng2_A RNF4, snurf, ring finge 62.4 1.5 5E-05 32.9 -0.2 36 291-326 11-48 (71)
153 2ecj_A Tripartite motif-contai 61.5 1.6 5.4E-05 31.2 -0.2 30 291-325 16-45 (58)
154 1weo_A Cellulose synthase, cat 61.0 14 0.00047 29.4 5.1 49 129-186 15-68 (93)
155 2jp7_A MRNA export factor MEX6 60.7 24 0.00083 25.6 6.1 40 63-102 5-44 (57)
156 2ecw_A Tripartite motif-contai 60.0 2.4 8.1E-05 32.7 0.6 30 291-325 20-49 (85)
157 2knz_A Ubiquilin-4; cytoplasm, 59.6 19 0.00066 25.5 5.4 37 65-102 12-49 (53)
158 2jy5_A Ubiquilin-1; UBA, alter 59.3 15 0.00051 26.0 4.8 35 66-101 14-49 (52)
159 2ecn_A Ring finger protein 141 58.9 2.5 8.6E-05 31.5 0.6 30 291-326 16-45 (70)
160 3ghg_A Fibrinogen alpha chain; 58.8 42 0.0014 35.2 9.8 51 450-500 107-159 (562)
161 2y43_A E3 ubiquitin-protein li 58.4 2.2 7.4E-05 34.4 0.1 31 291-326 23-54 (99)
162 2xeu_A Ring finger protein 4; 58.1 2 6.9E-05 31.2 -0.1 36 291-326 4-41 (64)
163 1oai_A Nuclear RNA export fact 58.0 31 0.0011 25.1 6.4 40 63-102 6-45 (59)
164 2csy_A Zinc finger protein 183 57.1 2.8 9.5E-05 32.4 0.6 30 291-325 16-45 (81)
165 3bq3_A Defective in cullin ned 56.9 12 0.00041 36.3 5.2 41 62-102 13-53 (270)
166 2y1n_A E3 ubiquitin-protein li 56.9 11 0.00037 38.6 5.0 32 246-302 348-379 (389)
167 3knv_A TNF receptor-associated 56.0 2.4 8.2E-05 37.0 0.0 30 291-325 32-61 (141)
168 2ecv_A Tripartite motif-contai 55.3 3 0.0001 32.1 0.5 30 291-325 20-49 (85)
169 2kiz_A E3 ubiquitin-protein li 55.2 3.7 0.00013 30.5 0.9 34 291-326 15-48 (69)
170 2js4_A UPF0434 protein BB2007; 54.7 7.3 0.00025 29.7 2.5 28 291-318 9-37 (70)
171 2hf1_A Tetraacyldisaccharide-1 54.7 6.9 0.00024 29.6 2.4 27 291-317 9-36 (68)
172 1jm7_A BRCA1, breast cancer ty 54.3 3.1 0.0001 34.2 0.4 31 291-326 22-52 (112)
173 2ea6_A Ring finger protein 4; 53.8 2.5 8.7E-05 31.2 -0.2 36 291-326 16-53 (69)
174 1wiv_A UBP14, ubiquitin-specif 52.4 31 0.0011 26.3 5.9 34 68-102 33-66 (73)
175 2pk7_A Uncharacterized protein 52.1 8.3 0.00028 29.3 2.5 27 291-317 9-36 (69)
176 1odh_A MGCM1; transcription fa 51.8 11 0.00038 33.2 3.5 19 291-315 111-131 (174)
177 3qt1_I DNA-directed RNA polyme 51.3 6.2 0.00021 34.1 1.9 29 289-317 23-56 (133)
178 2dai_A Ubadc1, ubiquitin assoc 50.8 29 0.00098 27.2 5.5 36 66-102 31-66 (83)
179 1x4w_A Hypothetical protein FL 49.6 4.2 0.00014 30.6 0.5 28 290-320 15-44 (67)
180 1deq_A Fibrinogen (alpha chain 49.3 2.2E+02 0.0074 28.7 12.8 10 502-511 188-197 (390)
181 1weo_A Cellulose synthase, cat 49.1 14 0.00048 29.3 3.4 53 229-306 21-74 (93)
182 3h0g_I DNA-directed RNA polyme 48.7 10 0.00035 31.6 2.8 28 290-317 4-36 (113)
183 2dkl_A Trinucleotide repeat co 48.3 33 0.0011 27.0 5.6 37 65-102 22-58 (85)
184 1wgl_A TOLL-interacting protei 48.0 28 0.00094 25.4 4.7 38 65-102 10-48 (59)
185 2dah_A Ubiquilin-3; UBA domain 47.8 36 0.0012 24.3 5.2 36 66-102 11-47 (54)
186 2jrp_A Putative cytoplasmic pr 47.5 15 0.00052 28.7 3.3 26 292-325 33-61 (81)
187 2jny_A Uncharacterized BCR; st 47.4 11 0.00036 28.5 2.4 27 291-317 11-38 (67)
188 2l0b_A E3 ubiquitin-protein li 47.2 3.3 0.00011 32.9 -0.5 35 291-327 41-75 (91)
189 2yw8_A RUN and FYVE domain-con 46.8 10 0.00034 29.7 2.3 40 283-324 11-52 (82)
190 3t6p_A Baculoviral IAP repeat- 46.5 8.4 0.00029 38.8 2.3 26 247-302 312-338 (345)
191 3qt1_I DNA-directed RNA polyme 45.1 7.5 0.00026 33.5 1.4 31 218-251 21-55 (133)
192 2f42_A STIP1 homology and U-bo 44.9 26 0.00088 31.7 5.1 30 219-257 104-133 (179)
193 4ayb_Q DNA-directed RNA polyme 44.2 27 0.00094 27.4 4.3 65 1-86 1-68 (104)
194 2lbm_A Transcriptional regulat 43.4 57 0.0019 28.3 6.8 48 129-184 62-116 (142)
195 2cp9_A EF-TS, EF-TSMT, elongat 43.1 31 0.0011 25.7 4.3 39 66-104 11-49 (64)
196 1vej_A Riken cDNA 4931431F19; 42.1 55 0.0019 25.0 5.7 37 65-102 30-67 (74)
197 2cpw_A CBL-interacting protein 42.0 46 0.0016 24.5 5.2 35 67-102 22-57 (64)
198 2dag_A Ubiquitin carboxyl-term 41.8 46 0.0016 25.3 5.3 35 67-102 12-47 (74)
199 3swf_A CGMP-gated cation chann 41.7 56 0.0019 24.9 5.6 46 451-497 5-50 (74)
200 2ecl_A Ring-box protein 2; RNF 41.7 7.9 0.00027 29.9 1.0 35 292-327 28-62 (81)
201 2bwb_A Ubiquitin-like protein 41.0 64 0.0022 22.1 5.5 36 65-101 8-44 (46)
202 3swy_A Cyclic nucleotide-gated 40.7 46 0.0016 23.0 4.6 41 452-493 4-44 (46)
203 2a01_A Apolipoprotein A-I; fou 40.7 1.2E+02 0.0042 28.4 9.4 61 450-510 166-229 (243)
204 1twf_I B12.6, DNA-directed RNA 40.0 13 0.00044 31.5 2.1 28 290-317 4-36 (122)
205 2lli_A Protein AIR2; RNA surve 40.0 19 0.00066 30.2 3.2 21 248-268 20-41 (124)
206 1joc_A EEA1, early endosomal a 39.9 11 0.00038 32.1 1.6 39 284-324 62-102 (125)
207 3nyb_B Protein AIR2; polya RNA 39.5 19 0.00066 28.2 2.9 49 250-324 5-55 (83)
208 4esj_A Type-2 restriction enzy 39.2 19 0.00067 33.9 3.3 22 280-302 25-47 (257)
209 3m7n_A Putative uncharacterize 37.9 14 0.00049 33.3 2.2 24 291-316 141-165 (179)
210 2kpi_A Uncharacterized protein 37.9 21 0.00071 25.8 2.6 20 291-312 11-30 (56)
211 4a0k_B E3 ubiquitin-protein li 37.0 7.2 0.00025 32.9 0.0 26 303-328 74-99 (117)
212 2jne_A Hypothetical protein YF 36.4 29 0.001 28.0 3.4 16 291-306 62-77 (101)
213 2l2d_A OTU domain-containing p 35.5 97 0.0033 22.8 5.8 38 64-101 17-54 (73)
214 2xzm_9 RPS31E; ribosome, trans 35.3 18 0.00063 33.0 2.4 28 291-319 114-143 (189)
215 2lli_A Protein AIR2; RNA surve 35.2 34 0.0012 28.7 4.0 18 251-268 43-60 (124)
216 1dl6_A Transcription factor II 34.9 24 0.00082 25.6 2.6 24 291-314 12-37 (58)
217 1ee8_A MUTM (FPG) protein; bet 34.9 18 0.0006 35.0 2.4 25 291-315 236-263 (266)
218 1joc_A EEA1, early endosomal a 34.8 16 0.00053 31.1 1.8 35 128-162 67-103 (125)
219 2xzf_A Formamidopyrimidine-DNA 34.5 15 0.00053 35.5 1.9 25 291-315 243-270 (271)
220 1vek_A UBP14, ubiquitin-specif 34.1 79 0.0027 24.7 5.7 35 67-102 32-67 (84)
221 1whc_A RSGI RUH-027, UBA/UBX 3 33.8 55 0.0019 24.1 4.5 35 67-102 12-47 (64)
222 3mjh_B Early endosome antigen 33.6 10 0.00036 24.5 0.3 14 128-141 3-16 (34)
223 1wr1_B Ubiquitin-like protein 33.3 1E+02 0.0034 22.3 5.7 37 65-102 18-55 (58)
224 1dv0_A DNA repair protein HHR2 33.3 14 0.00046 25.7 0.9 36 66-102 6-41 (47)
225 3u6p_A Formamidopyrimidine-DNA 33.3 16 0.00055 35.4 1.8 24 291-314 246-272 (273)
226 1twf_L ABC10-alpha, DNA-direct 33.1 13 0.00044 28.3 0.8 23 292-315 30-53 (70)
227 1z2q_A LM5-1; membrane protein 32.9 19 0.00065 28.2 1.9 35 127-161 18-54 (84)
228 1k82_A Formamidopyrimidine-DNA 32.9 17 0.00058 35.2 1.9 24 291-314 241-267 (268)
229 3k9o_A Ubiquitin-conjugating e 32.4 48 0.0016 30.3 4.9 36 66-102 165-200 (201)
230 1k3x_A Endonuclease VIII; hydr 32.1 18 0.0006 34.9 1.9 24 291-314 235-261 (262)
231 3t7l_A Zinc finger FYVE domain 31.9 19 0.00066 28.6 1.8 35 128-162 18-54 (90)
232 3iv1_A Tumor susceptibility ge 31.7 1.8E+02 0.006 22.4 10.3 32 377-415 9-40 (78)
233 1dvp_A HRS, hepatocyte growth 31.5 22 0.00077 33.1 2.5 32 291-324 162-194 (220)
234 2yw8_A RUN and FYVE domain-con 31.4 19 0.00065 28.0 1.6 33 129-161 18-52 (82)
235 3u5c_f 40S ribosomal protein S 31.0 23 0.00078 31.1 2.3 29 291-319 119-150 (152)
236 3dpl_R Ring-box protein 1; ubi 30.7 15 0.00051 30.2 0.9 25 304-328 64-88 (106)
237 3s84_A Apolipoprotein A-IV; fo 30.4 3.7E+02 0.013 25.7 17.2 50 452-501 168-220 (273)
238 1qkl_A RPB6, DNA-directed RNA 30.3 1.2E+02 0.0039 25.7 6.3 26 47-72 49-74 (127)
239 2zet_C Melanophilin; complex, 30.0 73 0.0025 27.9 5.4 36 289-325 67-103 (153)
240 2ko5_A Ring finger protein Z; 29.8 20 0.00068 28.8 1.5 47 129-189 27-74 (99)
241 2apo_B Ribosome biogenesis pro 29.6 19 0.00065 26.5 1.2 30 288-330 4-33 (60)
242 1y02_A CARP2, FYVE-ring finger 29.3 18 0.00061 30.6 1.2 38 126-163 15-54 (120)
243 1tr8_A Conserved protein (MTH1 29.2 79 0.0027 25.7 5.1 33 65-97 66-98 (102)
244 3lay_A Zinc resistance-associa 29.2 3.1E+02 0.011 24.4 10.5 60 438-497 67-131 (175)
245 3e46_A Ubiquitin-conjugating e 29.2 75 0.0026 30.3 5.8 36 66-102 217-252 (253)
246 2o35_A Hypothetical protein DU 28.9 25 0.00087 28.4 1.9 16 153-168 42-57 (105)
247 3fyb_A Protein of unknown func 28.6 26 0.00088 28.3 1.9 16 153-168 41-56 (104)
248 1zbd_B Rabphilin-3A; G protein 28.0 19 0.00066 31.0 1.2 30 129-158 54-86 (134)
249 1ufz_A Hypothetical protein BA 27.7 1.8E+02 0.0062 22.6 6.6 47 55-102 26-74 (83)
250 1wii_A Hypothetical UPF0222 pr 27.5 26 0.00091 27.6 1.8 27 291-317 24-57 (85)
251 2aus_D NOP10, ribosome biogene 26.9 19 0.00066 26.4 0.9 29 289-330 4-32 (60)
252 1z60_A TFIIH basal transcripti 26.6 32 0.0011 25.1 2.0 34 131-165 16-50 (59)
253 1x4u_A Zinc finger, FYVE domai 26.5 26 0.0009 27.3 1.7 34 128-161 12-47 (84)
254 2dhy_A CUE domain-containing p 26.2 1.4E+02 0.0049 22.2 5.6 38 65-102 19-57 (67)
255 3htk_C E3 SUMO-protein ligase 26.2 21 0.00071 34.4 1.2 30 291-325 182-212 (267)
256 2bl6_A Nucleocapsid protein P1 25.7 39 0.0013 21.8 2.2 16 252-267 2-17 (37)
257 3zyq_A Hepatocyte growth facto 25.5 33 0.0011 32.2 2.4 32 291-324 165-197 (226)
258 4aco_A Centromere DNA-binding 25.3 15 0.00051 40.8 0.0 8 59-66 720-727 (956)
259 2ekk_A UBA domain from E3 ubiq 25.2 1.2E+02 0.004 20.6 4.7 33 67-101 12-44 (47)
260 2akl_A PHNA-like protein PA012 25.0 34 0.0012 29.1 2.1 29 288-317 25-54 (138)
261 3a1b_A DNA (cytosine-5)-methyl 24.9 38 0.0013 30.0 2.5 34 129-165 78-114 (159)
262 1wff_A Riken cDNA 2810002D23 p 24.6 82 0.0028 24.7 4.1 29 129-157 24-52 (85)
263 1vfy_A Phosphatidylinositol-3- 24.3 27 0.00093 26.4 1.3 31 131-161 12-44 (73)
264 1wfk_A Zinc finger, FYVE domai 23.9 36 0.0012 26.9 2.0 33 129-161 8-42 (88)
265 1deq_A Fibrinogen (alpha chain 23.7 5.7E+02 0.019 25.7 13.7 9 380-388 93-101 (390)
266 2lbc_A Ubiquitin carboxyl-term 23.4 1.2E+02 0.0041 25.3 5.4 35 67-102 81-115 (126)
267 1otr_A Protein CUE2; protein-p 23.2 1.6E+02 0.0054 20.5 5.0 38 65-102 5-43 (49)
268 3h0g_L DNA-directed RNA polyme 22.7 35 0.0012 25.3 1.6 25 292-317 23-48 (63)
269 1t6f_A Geminin; coiled-coil, c 22.4 1.4E+02 0.0049 19.3 4.1 25 463-492 10-34 (37)
270 1qxf_A GR2, 30S ribosomal prot 21.8 70 0.0024 23.8 3.1 31 222-255 8-39 (66)
271 2zet_C Melanophilin; complex, 21.8 25 0.00085 31.0 0.7 31 129-159 67-100 (153)
272 2gvi_A Conserved hypothetical 21.5 55 0.0019 30.1 3.1 61 94-160 138-201 (204)
273 2xvc_A ESCRT-III, SSO0910; cel 21.3 1.7E+02 0.0059 21.1 4.9 36 53-88 8-48 (59)
274 1z67_A Hypothetical protein S4 21.2 1.1E+02 0.0036 26.3 4.5 37 53-89 62-99 (135)
275 2cp8_A NEXT to BRCA1 gene 1 pr 20.4 1.6E+02 0.0054 21.0 4.6 33 70-102 15-47 (54)
276 3zyq_A Hepatocyte growth facto 20.2 64 0.0022 30.1 3.3 33 130-162 164-198 (226)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.74 E-value=2.4e-19 Score=136.02 Aligned_cols=56 Identities=46% Similarity=1.037 Sum_probs=48.9
Q ss_pred HHHhccCCCCCCccceeecCCCCeeEec---cCccccccccccccCCCCccccCCccCCCCcc
Q 009189 285 YIAVHTKHCPKCQKLVEKNGGCNLVSCI---CGQPFCWLCGAATGSDHTWTSIAGHSCGRYKE 344 (540)
Q Consensus 285 ~i~~~~k~CP~C~~~IeK~~GCnhm~C~---C~~~FCw~C~~~~~~~H~~~~~~g~~C~~~~~ 344 (540)
||.+++|+||+|+.+|||++|||||+|+ |+++|||+|+++|. .|+ ...|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~-~~~---~~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE-PHG---SAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG-GGG---TSSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc-cCC---CccccCCCccc
Confidence 6888999999999999999999999995 99999999999985 342 13489999975
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.67 E-value=7e-17 Score=135.04 Aligned_cols=88 Identities=25% Similarity=0.625 Sum_probs=78.6
Q ss_pred ccccccccccccCCCCceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccc--cchhHHHHhhccCChhHHH
Q 009189 128 SSSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAI--CDESKIRCLVRARDSDLAD 204 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~--~~~~~i~~ll~~~~~e~~e 204 (540)
++.++|+||++.++..+++.+ +|||.||.+||+.||..+|.+|...+++||.++|+.. +++..++++++ +++++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~---~~~~~ 79 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA---AEIMQ 79 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSC---HHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCC---HHHHH
Confidence 357899999999876666665 7999999999999999999988766899999999999 99999999998 88999
Q ss_pred HHHHHHHHHhhhcC
Q 009189 205 KFDRFMLESYIEDN 218 (540)
Q Consensus 205 ky~~~~~~~~v~~~ 218 (540)
+|.+++++++|+++
T Consensus 80 ky~~~~~~~~v~~~ 93 (94)
T 1wim_A 80 RYKKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHHHSSCSSC
T ss_pred HHHHHHHHhhhccC
Confidence 99999999988754
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.27 E-value=3e-13 Score=110.75 Aligned_cols=77 Identities=23% Similarity=0.556 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHhhhcCCccccCCCCCCCCCeEEeccCccceeecC-CCceecccccCcc---CCCCCchhhHHHhHH
Q 009189 200 SDLADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDELREVECA-CGLQFCFRCSYEA---HSPCSCYMWDLWSKK 275 (540)
Q Consensus 200 ~e~~eky~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~---H~~~~C~~~~~~~~~ 275 (540)
++++++|++++++++|..+++++||| +|+.++..... ...|.|+ |++.||+.|+.+| |.|.+|.++++|..+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP---~C~~~~~~~~~-~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA---QCSFGFIYERE-QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS---SSCCCEECCCS-CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc---CCCchheecCC-CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 57889999999999999999999999 79998876553 4569997 9999999999999 999999999999988
Q ss_pred hhhhh
Q 009189 276 CQDES 280 (540)
Q Consensus 276 ~~~~~ 280 (540)
...++
T Consensus 80 n~~~~ 84 (86)
T 2ct7_A 80 NSGPS 84 (86)
T ss_dssp HTCSS
T ss_pred Ccccc
Confidence 65544
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=1.1e-11 Score=109.55 Aligned_cols=116 Identities=28% Similarity=0.617 Sum_probs=76.6
Q ss_pred ccccccccccccCCC-----CceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhHHHHhhccCChhH
Q 009189 128 SSSYCCNICFDDVSL-----EEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDL 202 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~ 202 (540)
++.++|+||++.+.. ..++.++|||.||..||..|+... ..||. |+..+....+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~l~~l~------- 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIY------- 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTT--TCCBCTTTCEEECB-------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCC--CCCcCccccccccc-------
Confidence 357899999999731 122788999999999999998642 38998 98887654322211
Q ss_pred HHHHHHHHHHHhhhcCCccccCCCCCCCCCeEEecc-CccceeecCCCceecccccCccCCCCCchhhHHHhHHhhhhhH
Q 009189 203 ADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEV-DELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESE 281 (540)
Q Consensus 203 ~eky~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~-~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~ 281 (540)
+ +.....|| -|...+.... .....+..+||+.||..|... |..
T Consensus 68 ------------i--~~~~~~C~---iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~------- 111 (133)
T 4ap4_A 68 ------------I--GSGTVSCP---ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLK------- 111 (133)
T ss_dssp ------------C--SSSSCBCT---TTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHH-------
T ss_pred ------------c--CCCCCCCC---CCCCccccccccCcceEeCCCCChhhHHHHHH------------HHH-------
Confidence 1 12334687 5765543211 111225568999999999643 221
Q ss_pred HHHHHHhccCCCCCCccceeec
Q 009189 282 TVNYIAVHTKHCPKCQKLVEKN 303 (540)
Q Consensus 282 ~~~~i~~~~k~CP~C~~~IeK~ 303 (540)
..+.||.|+..+.++
T Consensus 112 -------~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 -------NANTCPTCRKKINHK 126 (133)
T ss_dssp -------HCSBCTTTCCBCCGG
T ss_pred -------cCCCCCCCCCcCChh
Confidence 127999999999865
No 5
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.04 E-value=7.3e-12 Score=100.91 Aligned_cols=65 Identities=26% Similarity=0.650 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHhhhcCCccccCCCCCCCCCeEEeccCccceeec------CCCceecccccCccCCCCCchh
Q 009189 200 SDLADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDELREVEC------ACGLQFCFRCSYEAHSPCSCYM 268 (540)
Q Consensus 200 ~e~~eky~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C------~C~~~fC~~C~~~~H~~~~C~~ 268 (540)
++++++|++++++++|..+. ++||| .|+|+.++..++ ....+.| .|++.||+.|+.+||. .+|..
T Consensus 5 ~~~~~rY~~~~~e~~v~~~~-~~~CP-~p~C~~~v~~~~-~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 5 EEQYNRYQQYGAEECVLQMG-GVLCP-RPGCGAGLLPEP-DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCSCCCSSSCCSSCCCS-SCCCC-SSSCCCCCCCCS-CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred HHHHHHHHHHHHHHHhhhCC-cEECC-CCCCCcccEECC-CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 67899999999999999886 89999 599999988765 3456899 5999999999999999 99975
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.77 E-value=1.9e-09 Score=99.67 Aligned_cols=84 Identities=25% Similarity=0.499 Sum_probs=58.7
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhHHHHhhccCChhHHHHH
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKF 206 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky 206 (540)
..+.+.|+||++.+ .+++.++|||.||..||..++... ..+||. |+..+.... +.. ...
T Consensus 15 ~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~~---- 73 (170)
T 3hcs_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DNF---- 73 (170)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CHH----
T ss_pred CCCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC-------CCCCCC--CccCcchhh---hhh---hHH----
Confidence 45789999999998 678889999999999999998763 138998 888876542 121 001
Q ss_pred HHHHHHHhhhcCCccccCCCCCCCCCeEEecc
Q 009189 207 DRFMLESYIEDNKRVKWCPSVPHCGNAIRIEV 238 (540)
Q Consensus 207 ~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 238 (540)
++..+. .-...||+ .+|+..+....
T Consensus 74 ----~~~~i~--~l~v~C~n-~GC~~~~~~~~ 98 (170)
T 3hcs_A 74 ----AKREIL--SLMVKCPN-EGCLHKMELRH 98 (170)
T ss_dssp ----HHHHHH--TSEEECCS-TTCCCEEEGGG
T ss_pred ----HHHHHh--hcccCCCC-CCCCceecHhH
Confidence 111111 12358995 79998877554
No 7
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.7e-08 Score=80.42 Aligned_cols=57 Identities=25% Similarity=0.629 Sum_probs=46.5
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
..+.+.|+||++.+ .+++.++|||.||..|+..|+..+...+. .+.||. |+..+...
T Consensus 16 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~--Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDKG--ESSCPV--CRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTTS--CCCCTT--TCCSSCSS
T ss_pred ccCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCCC--CCcCCC--CCCccCHH
Confidence 34678999999998 56778899999999999999988664443 579998 98877643
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.56 E-value=3.1e-08 Score=81.70 Aligned_cols=50 Identities=22% Similarity=0.626 Sum_probs=41.7
Q ss_pred CccccccccccccCCCCceeecC-CCCcccHHHHHHHHHHhhhcCCcccccccCccccccc
Q 009189 127 VSSSYCCNICFDDVSLEEITTMD-CGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAIC 186 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~ 186 (540)
..+.+.|+||++.+ .+++.++ |||.||..|+..++... + ...||. |+..+
T Consensus 10 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 60 (92)
T ss_dssp CCTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHC---T---TCCCTT--TCCSS
T ss_pred CCcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhc---C---CCcCcC--CCCcC
Confidence 34679999999988 6788999 99999999999998742 2 368998 88775
No 9
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.55 E-value=6.4e-08 Score=78.13 Aligned_cols=57 Identities=25% Similarity=0.573 Sum_probs=45.5
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
....+.|+||++.+ .+++.++|||.||..|+..|+......+ ....||. |+..+...
T Consensus 16 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTD--GKGNCPV--CRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTT--SCBCCTT--TCCCCCTT
T ss_pred CccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCC--CCCCCCC--CCCcCCHH
Confidence 34678999999997 5677889999999999999998754222 2579998 98877653
No 10
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=6.8e-08 Score=80.15 Aligned_cols=57 Identities=16% Similarity=0.399 Sum_probs=45.6
Q ss_pred ccccccccccccCCCCceeecC-CCCcccHHHHHHHHHHhhhcCCcccccccCcccccc-cch
Q 009189 128 SSSYCCNICFDDVSLEEITTMD-CGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAI-CDE 188 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~-~~~ 188 (540)
...+.|+||++.+ .+|+.++ |||.||+.||..||...-..+ ....||..+|... +..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~--~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRK--KKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTT--CCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcC--CCCCCCcCcCcccccCH
Confidence 3579999999998 7899995 999999999999998642111 2579999999866 543
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.53 E-value=8.8e-09 Score=82.31 Aligned_cols=57 Identities=23% Similarity=0.524 Sum_probs=44.8
Q ss_pred ccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 128 SSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
.+.++|+||++.+ .+++.++|||.||..|+..|+......+. ....||. |+..+...
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~-~~~~CP~--Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMG-GKSSCPV--CGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCC-CCCCCSS--SCCCCCSS
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCC-CCCcCCC--CCCcCCHh
Confidence 4678999999998 56788999999999999999876432222 3579998 99887653
No 12
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.53 E-value=4.4e-08 Score=84.78 Aligned_cols=84 Identities=25% Similarity=0.499 Sum_probs=58.5
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhHHHHhhccCChhHHHHH
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKF 206 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky 206 (540)
..+.+.|+||++.+ .+++.++|||.||..|+..|+... ...||. |+..+.... +.. ..
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~----- 72 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DN----- 72 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CH-----
T ss_pred CCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHh---ccc---CH-----
Confidence 45678999999987 578889999999999999998763 238998 888876542 222 01
Q ss_pred HHHHHHHhhhcCCccccCCCCCCCCCeEEecc
Q 009189 207 DRFMLESYIEDNKRVKWCPSVPHCGNAIRIEV 238 (540)
Q Consensus 207 ~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 238 (540)
.++..+.. -...||+ .+|+..+....
T Consensus 73 ---~l~~~i~~--l~v~C~n-~gC~~~~~~~~ 98 (118)
T 3hct_A 73 ---FAKREILS--LMVKCPN-EGCLHKMELRH 98 (118)
T ss_dssp ---HHHHHHHT--SEEECSS-TTCCCEEEGGG
T ss_pred ---HHHHHHcc--ceeECCC-CCCCCEEeeHH
Confidence 11122221 2358995 89998877554
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=4.3e-08 Score=79.88 Aligned_cols=61 Identities=21% Similarity=0.531 Sum_probs=47.2
Q ss_pred ccccccccccccCCCCc--eeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhHHHHhh
Q 009189 128 SSSYCCNICFDDVSLEE--ITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLV 195 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll 195 (540)
.+.++|+||++.+...+ ++.++|||.||..|+..|+... + ..+.||. |+..+....+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~--~~~~CP~--Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---I--NGVRCPF--CSKITRITSLTQLT 75 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---S--SCBCCTT--TCCCBCCSSTTTSE
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---C--CCcCCCC--CCCcccchhHHHHH
Confidence 46789999999985433 7888999999999999999764 1 2479998 99887765554443
No 14
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.52 E-value=4.5e-08 Score=78.07 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=42.4
Q ss_pred ccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 128 SSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
.+.+.|+||++.+ .+++.++|||.||..|+..|+.. | ...||. |+..+...
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~----~---~~~CP~--C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA----G---HKTCPK--SQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT----T---CCBCTT--TCCBCSSC
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH----C---cCCCCC--CcCCCChh
Confidence 4679999999987 67889999999999999999853 2 368998 88877643
No 15
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=9.7e-08 Score=72.81 Aligned_cols=46 Identities=30% Similarity=0.612 Sum_probs=37.6
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccC
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCME 179 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~ 179 (540)
..+.+.|+||++.+ .+++.++|||.||..|+..|+... + ...+||.
T Consensus 17 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~--~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---C--GFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHHC---S--SCCCCSC
T ss_pred CccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHcC---C--CCCcCcC
Confidence 34678999999998 578888999999999999999751 1 2468986
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.3e-08 Score=75.58 Aligned_cols=52 Identities=25% Similarity=0.592 Sum_probs=42.2
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
..+.+.|+||++.+ .+++.++|||.||..|+..|+. . ....||. |+..+...
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~----~---~~~~CP~--Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLS----S---SSPKCTA--CQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHT----T---SSCCCTT--TCCCCCTT
T ss_pred CCcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHH----h---CcCCCCC--CCcCCChh
Confidence 34678999999997 5677789999999999999985 1 2368998 98877653
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2.9e-08 Score=77.98 Aligned_cols=54 Identities=28% Similarity=0.601 Sum_probs=43.0
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
....+.|+||++.+ .+++.++|||.||..|+..|+... + ....||. |+..+...
T Consensus 17 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~---~--~~~~CP~--Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---C--GFFKCPL--CKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSS---C--SCCCCSS--SCCCCCCC
T ss_pred CccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcC---C--CCCCCCC--CCCcCCcc
Confidence 34678999999987 578888999999999999987521 1 3579998 98877643
No 18
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.49 E-value=5.9e-08 Score=77.57 Aligned_cols=53 Identities=21% Similarity=0.595 Sum_probs=41.2
Q ss_pred ccccccccccccCCCCceeecC--CCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 128 SSSYCCNICFDDVSLEEITTMD--CGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
.+.++|+||++.+...++..++ |||.||..||..+|.. + ..+||. |+..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~---~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E---NGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S---CSBCTT--TCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C---CCCCCC--CCCccCCC
Confidence 4678999999988655555554 9999999999988753 2 368998 99887653
No 19
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.49 E-value=6.5e-08 Score=83.36 Aligned_cols=82 Identities=22% Similarity=0.556 Sum_probs=56.5
Q ss_pred cccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhHHHHhhccCChhHHHHHHH
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDR 208 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky~~ 208 (540)
+.+.|+||++.+ .+++.++|||.||..|+..|+... ...||. |+..+....+...+ ..+.+
T Consensus 22 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~----~~l~~---- 82 (116)
T 1rmd_A 22 KSISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV----KSFLN---- 82 (116)
T ss_dssp HHTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC----HHHHH----
T ss_pred CCCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH----HHHHH----
Confidence 568999999998 678889999999999999998762 248998 99888764332111 11111
Q ss_pred HHHHHhhhcCCccccCCCCCCCCCeEEec
Q 009189 209 FMLESYIEDNKRVKWCPSVPHCGNAIRIE 237 (540)
Q Consensus 209 ~~~~~~v~~~~~~~~CP~~p~C~~~i~~~ 237 (540)
. +.. ...+||+ .+|+..+...
T Consensus 83 ~-----i~~--l~v~C~~-~gC~~~~~~~ 103 (116)
T 1rmd_A 83 I-----LNS--LMVKCPA-QDCNEEVSLE 103 (116)
T ss_dssp H-----HHH--CEEECCS-TTCCCEEEHH
T ss_pred H-----HHH--hcCCCCC-CCCcchhhHh
Confidence 1 111 1247995 6998877643
No 20
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.46 E-value=2.7e-08 Score=88.94 Aligned_cols=49 Identities=22% Similarity=0.621 Sum_probs=40.2
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCccccccc
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAIC 186 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~ 186 (540)
..+.+.|+||++.+ .+++.++|||.||..|+..++.. + ...||. |+..+
T Consensus 28 l~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~----~---~~~CP~--Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS----G---PQNCAA--CVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGG----S---CEECHH--HHHTT
T ss_pred CCcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhc----C---CCCCCC--CCCcc
Confidence 34679999999998 67888999999999999998742 2 358998 87754
No 21
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.44 E-value=2e-07 Score=75.82 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=43.2
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
..+.+.|+||++.+ .+|+.++|||.||+.|+..||.. ...||. |+..+...
T Consensus 11 ~p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGG
T ss_pred CchheECcccCchh--cCCeECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChH
Confidence 45689999999998 78999999999999999999974 147998 88777643
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=8.5e-08 Score=75.05 Aligned_cols=53 Identities=21% Similarity=0.446 Sum_probs=43.3
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhHH
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKI 191 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~i 191 (540)
....+.|+||++.+ .+++.++|||.||..|+..|+.. ...||. |+..+....+
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~ 64 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL--------GKRCAL--CRQEIPEDFL 64 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC--------SSBCSS--SCCBCCHHHH
T ss_pred CCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC--------CCcCcC--cCchhCHhhc
Confidence 34678999999997 67888899999999999988643 258998 9998876544
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=79.72 Aligned_cols=51 Identities=22% Similarity=0.565 Sum_probs=43.0
Q ss_pred cccccccccccCCCCceee-cCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhH
Q 009189 129 SSYCCNICFDDVSLEEITT-MDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESK 190 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 190 (540)
+.+.|+||++.+ .+++. ++|||.||..|+..|+... ...||. |+..+....
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGG
T ss_pred CCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHH
Confidence 578999999998 57888 8999999999999999763 158998 998886543
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.6e-07 Score=74.21 Aligned_cols=48 Identities=31% Similarity=0.735 Sum_probs=40.8
Q ss_pred ccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 128 SSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
...+.|+||++.+ .+++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 3578999999998 66888999999999999999864 258998 988775
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=2.8e-07 Score=72.30 Aligned_cols=51 Identities=31% Similarity=0.751 Sum_probs=41.5
Q ss_pred CccccccccccccCCCCceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 127 VSSSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
..+.+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...||. |+..+...
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSS
T ss_pred cCCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcc
Confidence 34678999999988 457776 99999999999999965 258998 98877643
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.39 E-value=1.8e-07 Score=73.80 Aligned_cols=50 Identities=22% Similarity=0.626 Sum_probs=41.3
Q ss_pred CccccccccccccCCCCceeecC-CCCcccHHHHHHHHHHhhhcCCcccccccCccccccc
Q 009189 127 VSSSYCCNICFDDVSLEEITTMD-CGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAIC 186 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~ 186 (540)
....+.|+||++.+ .+++.++ |||.||..|+..|+... + ...||. |+..+
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS---S---SSCCSS--SCCSS
T ss_pred CCCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc---C---CCcCCC--CCCcC
Confidence 34678999999998 5788898 99999999999999762 2 368998 88754
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.39 E-value=1.9e-07 Score=81.46 Aligned_cols=49 Identities=22% Similarity=0.510 Sum_probs=41.5
Q ss_pred cccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
..++|+||++.+ .+++.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 51 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 568999999998 57888999999999999999872 2368998 8887764
No 28
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.38 E-value=5.6e-08 Score=75.85 Aligned_cols=53 Identities=30% Similarity=0.719 Sum_probs=41.0
Q ss_pred ccccccccccccCCC-----CceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhH
Q 009189 128 SSSYCCNICFDDVSL-----EEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESK 190 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 190 (540)
.+...|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..+....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhh
Confidence 467899999998732 122778999999999999998652 48998 988876543
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.36 E-value=2.3e-07 Score=79.13 Aligned_cols=53 Identities=23% Similarity=0.527 Sum_probs=42.9
Q ss_pred cccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhH
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESK 190 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 190 (540)
..+.|+||++.+ .+++.++|||.||..|+..|+... . ..+.||. |+..+....
T Consensus 20 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~--Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQK--K---GPSQCPL--CKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSS--S---SSCCCTT--TSCCCCTTT
T ss_pred CCCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhC--C---CCCCCcC--CCCcCCHhh
Confidence 467899999987 577888999999999999998753 1 2478998 998877543
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.36 E-value=1.6e-07 Score=78.57 Aligned_cols=48 Identities=23% Similarity=0.665 Sum_probs=40.1
Q ss_pred cccccccccccCCCCceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 129 SSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
+.+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...||. |+..+..
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCG
T ss_pred CCCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCCh
Confidence 568999999998 567777 89999999999999863 258998 9987764
No 31
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.35 E-value=2.6e-07 Score=68.20 Aligned_cols=49 Identities=24% Similarity=0.617 Sum_probs=39.3
Q ss_pred cccccccccccCCC--CceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSL--EEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
....|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 46789999999843 336778999999999999998763 58998 877653
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.35 E-value=1.6e-07 Score=83.56 Aligned_cols=47 Identities=30% Similarity=0.651 Sum_probs=39.0
Q ss_pred cccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
..++|+||++.+ .+++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 52 ~~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCC
T ss_pred ccCCCcccCccc--CCceECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCC
Confidence 357899999998 67899999999999999998753 247998 887664
No 33
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.34 E-value=1.1e-07 Score=81.72 Aligned_cols=51 Identities=24% Similarity=0.579 Sum_probs=41.6
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
..+.+.|+||++.+ .+++.++|||.||..|+..++.. + ...||. |+..+..
T Consensus 12 ~~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEK----A---SLCCPF--CRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCT----T---TSBCTT--TCCBCHH
T ss_pred CCCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhH----C---cCCCCC--CCcccCc
Confidence 34578999999998 57888999999999999988742 2 368998 9888764
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.32 E-value=7.3e-08 Score=74.04 Aligned_cols=54 Identities=26% Similarity=0.522 Sum_probs=39.7
Q ss_pred cccccccccc-cCCC--CceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhHH
Q 009189 129 SSYCCNICFD-DVSL--EEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKI 191 (540)
Q Consensus 129 ~~~~C~IC~e-~~~~--~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~i 191 (540)
+..+|+||++ .+.. ..++.++|||.||..|+..++.. + ..+||. |+..+....+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G---AGNCPE--CGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T---SSSCTT--TCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C---CCcCCC--CCCccccccc
Confidence 3578999999 5422 12256799999999999999763 2 368998 9988765433
No 35
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.32 E-value=8.2e-08 Score=73.17 Aligned_cols=52 Identities=29% Similarity=0.704 Sum_probs=40.3
Q ss_pred cccccccccccCCC-----CceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhH
Q 009189 129 SSYCCNICFDDVSL-----EEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESK 190 (540)
Q Consensus 129 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 190 (540)
+..+|+||++.+.. ..++.++|||.||..|+..|+.. ...||. |+..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccc
Confidence 45789999998732 12367899999999999999875 248998 988876543
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.6e-07 Score=68.19 Aligned_cols=45 Identities=29% Similarity=0.755 Sum_probs=35.9
Q ss_pred ccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccC
Q 009189 128 SSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCME 179 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~ 179 (540)
.+.+.|+||++.+ .+++.++|||.||..|+..|+... . ....||.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYL--KEPVIIECGHNFCKACITRWWEDL--E---RDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBC--SSCCCCSSCCCCCHHHHHHHTTSS--C---CSCCCSC
T ss_pred ccCCCCccCCccc--CccEeCCCCCccCHHHHHHHHHhc--C---CCCCCCC
Confidence 4678999999998 567889999999999999997531 1 2468886
No 37
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=3.4e-07 Score=70.82 Aligned_cols=51 Identities=31% Similarity=0.714 Sum_probs=39.5
Q ss_pred CccccccccccccCCC-----CceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 127 VSSSYCCNICFDDVSL-----EEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
......|+||++.+.. ..++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 3467899999998732 11267899999999999999875 248998 887764
No 38
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.26 E-value=1.4e-06 Score=67.55 Aligned_cols=51 Identities=22% Similarity=0.545 Sum_probs=40.3
Q ss_pred ccccccccccccCCC-CceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 128 SSSYCCNICFDDVSL-EEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
.....|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCccccC
Confidence 356789999998754 456778999999999999998752 36998 8877653
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.24 E-value=3.5e-07 Score=76.74 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=42.7
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
.++.+.|+||++.+ .+|+.++|||.||+.|+..||.. ...||. |+..+..
T Consensus 26 ~p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCT
T ss_pred CcHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCCh
Confidence 45689999999998 78999999999999999999863 247998 8887764
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.24 E-value=6e-07 Score=81.03 Aligned_cols=50 Identities=24% Similarity=0.558 Sum_probs=42.2
Q ss_pred cccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
..+.|+||++.+ .+++.++|||.||..|+..++.. + ...||. |+..+...
T Consensus 77 ~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA----Q---VFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T---CCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh----C---CCcCCC--CCccCCCC
Confidence 568999999988 67888999999999999999974 1 368998 98887654
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.23 E-value=5e-07 Score=76.74 Aligned_cols=48 Identities=23% Similarity=0.552 Sum_probs=39.9
Q ss_pred ccccccccccccCCCCceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 128 SSSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
...+.|+||++.+ .+++.+ +|||.||..|+..|+... ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETS--------KYCPI--CDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSC--------SBCTT--TCCBSC
T ss_pred CCcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhC--------CcCcC--CCcccc
Confidence 3578999999998 568887 999999999999998641 58998 887665
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.18 E-value=1.2e-06 Score=73.17 Aligned_cols=51 Identities=8% Similarity=-0.084 Sum_probs=43.2
Q ss_pred CccccccccccccCCCCceeecCCC-CcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCG-HYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
.++.+.|+||++.+ .+|+.++|| |.||+.||..||.. ...||. |+..+...
T Consensus 19 ~p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTT
T ss_pred CcHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChh
Confidence 45689999999998 789999999 99999999999874 137998 88877643
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.14 E-value=3.3e-07 Score=68.26 Aligned_cols=44 Identities=20% Similarity=0.517 Sum_probs=36.5
Q ss_pred cccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
+.++|+||++.+ .+++.++|||.||..|+.. ....||. |+..+.
T Consensus 5 ~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEA--KCPKLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSC--BCCSCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSS
T ss_pred cCCCceEeCCcc--CCeEEcCCCCcccHHHHcc-----------CCCCCCc--CCcEee
Confidence 568899999998 5678899999999999876 1468998 887664
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.13 E-value=1.7e-06 Score=85.78 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=43.3
Q ss_pred CccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 127 VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
.+..+.|+||++.+ .+|+.++|||+||+.|+..|+... + ..||. |+.+++..
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~---~----~~cP~--~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G----HFNPV--TRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHT---C----SSCTT--TCCCCCGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHC---C----CCCcC--CCCCCchh
Confidence 44689999999998 789999999999999999999751 2 24998 88888653
No 45
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.2e-06 Score=85.11 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=45.3
Q ss_pred CccccccccccccCCCCceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 127 VSSSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
....+.||||++.+ .+|++. .|||.||+.||..||.. .| ...||..+|+..+...
T Consensus 178 ~~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~---~~---~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQG---YT---TRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTT---CS---CEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHh---CC---CCCCCcccccCcCchh
Confidence 34678999999998 788875 99999999999999864 22 3789999999877643
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=2.9e-07 Score=79.47 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=39.1
Q ss_pred cccccccccccCCCCceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 129 SSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
+.++|+||++.+ .+++.+ +|||.||..|+..++. ..||. |+..+..
T Consensus 21 ~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSC
T ss_pred hCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCcc
Confidence 568999999998 678888 9999999999998864 57998 8887753
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.10 E-value=1.5e-06 Score=67.08 Aligned_cols=48 Identities=29% Similarity=0.591 Sum_probs=38.1
Q ss_pred cccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
....|+||++.+. ..++.++|||.||..|+..|+... ..||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCC
T ss_pred CCCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhH
Confidence 4578999999973 224778999999999999998541 48998 887765
No 48
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.09 E-value=1.1e-06 Score=64.86 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=37.2
Q ss_pred cccccccccccCCCC-ceeecC-CCCcccHHHHHHHHHHhhhcCCcccccccCccccccc
Q 009189 129 SSYCCNICFDDVSLE-EITTMD-CGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAIC 186 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~ 186 (540)
+..+|+||++.+... .+..++ |||.||..|+..|+.. ...||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEe
Confidence 467899999998543 356676 9999999999998743 247998 87665
No 49
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=3.3e-06 Score=66.31 Aligned_cols=50 Identities=24% Similarity=0.531 Sum_probs=39.2
Q ss_pred ccccccccccccCCCC-ceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 128 SSSYCCNICFDDVSLE-EITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
.....|+||++.+... ....++|||.||..|+..|+... ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 4567899999998543 34456999999999999998652 37998 887764
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.06 E-value=2.9e-06 Score=72.63 Aligned_cols=53 Identities=19% Similarity=0.462 Sum_probs=38.6
Q ss_pred ccccccccccCCCC----------------ceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 130 SYCCNICFDDVSLE----------------EITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 130 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
...|+||++.+... ....++|||.||..||..|+...-.. ....||. |+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~---~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD---GSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS---SCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC---CCCcCCC--CCCccC
Confidence 46899999997431 11257999999999999998542211 2468998 988765
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.05 E-value=1.9e-06 Score=70.88 Aligned_cols=51 Identities=25% Similarity=0.627 Sum_probs=39.9
Q ss_pred ccccccccccccCCCCc-eeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 128 SSSYCCNICFDDVSLEE-ITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
.....|+||++.+...+ +..++|||.||..|+..|+.. ...||. |+..+++
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCCC
Confidence 35678999999985433 566899999999999999853 138998 8887754
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.02 E-value=2.8e-06 Score=77.75 Aligned_cols=48 Identities=29% Similarity=0.653 Sum_probs=39.6
Q ss_pred cccccccccccCCCCceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
..+.|+||++.+ .+++.+ +|||.||..|+..|+.. + ...||. |+..+.
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRS----G---NKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHT----T---CCBCTT--TCCBCC
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHh----C---cCCCCC--CCCcCC
Confidence 567999999998 567776 99999999999999873 2 368998 888774
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=2.3e-06 Score=67.51 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=40.1
Q ss_pred ccccccccccccCCCCc-eeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 128 SSSYCCNICFDDVSLEE-ITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
.....|+||++.+...+ +..++|||.||..|+..|+... ..||. |+..+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCCC
Confidence 35678999999985433 4667999999999999998652 37998 8887654
No 54
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=1.1e-06 Score=68.35 Aligned_cols=47 Identities=23% Similarity=0.567 Sum_probs=37.9
Q ss_pred ccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 128 SSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
.....|+||++.+. + +.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR--------HRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC--------CSSCHH--HHHCTT
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC--------cCcCCC--cCCccc
Confidence 45789999999984 3 77899999999999987651 358998 887665
No 55
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.01 E-value=3.8e-06 Score=77.65 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=43.0
Q ss_pred ccccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 128 SSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
++.+.||||++.+ .+|+.++|||+||+.|+..||... |. .||. |+.+++..
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~---~~----tcP~--t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---GH----FDPV--TRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---CS----BCTT--TCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhC---CC----CCCC--CcCCCChh
Confidence 4789999999998 789999999999999999999762 32 6998 88877653
No 56
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.00 E-value=2.2e-06 Score=68.09 Aligned_cols=52 Identities=23% Similarity=0.545 Sum_probs=40.5
Q ss_pred ccccccccccccCCCC-ceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 128 SSSYCCNICFDDVSLE-EITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
.....|+||++.+... .+..++|||.||..|+..|+.. ...||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--------HDSCPV--CRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--------TCSCTT--TCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--------CCcCcC--cCCccCCc
Confidence 4578999999998543 3456799999999999999853 148998 98877643
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.89 E-value=3.4e-06 Score=66.53 Aligned_cols=43 Identities=28% Similarity=0.657 Sum_probs=36.3
Q ss_pred cccccccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHY-FCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
+...|+||++.+ .+++.++|||. ||..|+..+ ..||. |+..+.
T Consensus 23 ~~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred cCCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 467899999987 67888999999 999998764 48998 887765
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=7.5e-06 Score=64.65 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=35.7
Q ss_pred cccccccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHY-FCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
+..+|+||++.+ .+++.++|||. ||..|+.. ...||. |+..+..
T Consensus 24 ~~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCCC
T ss_pred CCCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC------------CCCCcc--CCceecC
Confidence 457899999987 67888999999 99999852 258998 8887653
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.72 E-value=1.6e-05 Score=60.69 Aligned_cols=49 Identities=18% Similarity=0.334 Sum_probs=38.0
Q ss_pred CccccccccccccCCCCceeec--CCCCc-ccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 127 VSSSYCCNICFDDVSLEEITTM--DCGHY-FCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
..+...|.||++.. .+++.+ ||||. ||..|+..++.. .-+||. |+..+.
T Consensus 5 ~~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CCCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 34567899999986 456655 99999 899999988752 137998 887764
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.60 E-value=4e-05 Score=78.90 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=39.5
Q ss_pred ccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 130 SYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 130 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
...|+||++.+ .+++.++|||.||..|+..|+.. + ...||. |+..+..
T Consensus 332 ~~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~----~---~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES----E---GQGCPF--CRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH----T---CSBCTT--TCCBCCE
T ss_pred CCCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc----C---CCCCCC--CCCccCC
Confidence 36899999987 67888999999999999988763 1 358998 8887654
No 61
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=3.9e-05 Score=61.42 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=36.4
Q ss_pred cccccccccccCCC------------Cceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 129 SSYCCNICFDDVSL------------EEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 129 ~~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
+..+|+||++.+.. ..++.+ +|||.||..|+..|+... -.||. |+..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcch
Confidence 45678888888732 224444 599999999999997642 38999 8887653
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.57 E-value=1.6e-05 Score=63.41 Aligned_cols=44 Identities=25% Similarity=0.652 Sum_probs=36.0
Q ss_pred cccccccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHY-FCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
+...|+||++.. .+++.+||||. ||..|+..+ ..||. |+..+..
T Consensus 17 ~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 356899999986 67888999999 999998743 28998 9887654
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.52 E-value=4.8e-05 Score=57.84 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=36.4
Q ss_pred cccccccccccCCCCceeec--CCCCc-ccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLEEITTM--DCGHY-FCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
....|.||++.. .+++.+ ||||. ||..|...++.. + -+||. |+..+.
T Consensus 6 ~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~----~----~~CPi--CR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKA----G----ASCPI--CKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHT----T----CBCTT--TCCBCC
T ss_pred cCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHh----C----CcCCC--cCchhh
Confidence 467899999976 445555 99998 999999987643 1 48998 888764
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.51 E-value=3.3e-05 Score=67.40 Aligned_cols=54 Identities=30% Similarity=0.686 Sum_probs=41.8
Q ss_pred CccccccccccccCCC-----CceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhH
Q 009189 127 VSSSYCCNICFDDVSL-----EEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESK 190 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 190 (540)
......|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..+....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTT--TCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCC--CCCcCChhc
Confidence 3467889999998731 123678999999999999998652 48998 998887654
No 65
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00013 Score=58.19 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=41.7
Q ss_pred ccccccccccccCCCCceeecCCC-----CcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 128 SSSYCCNICFDDVSLEEITTMDCG-----HYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
.....|.||++++...+...+||+ |.|...|+..|+... + ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~---~~~Cpl--Cr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D---TRCCEL--CKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C---CSBCSS--SCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C---CCCCCC--CCCeee
Confidence 356789999998866666668996 999999999999864 2 368999 887765
No 66
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.35 E-value=0.00013 Score=61.51 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=37.5
Q ss_pred cccccccccccCCCC----------------ceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLE----------------EITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
...+|+||++.+... ..+.++|+|.|+..|+..|+.. ...||. |+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcce
Confidence 457899999987532 1345799999999999999764 247998 887654
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=8.5e-05 Score=57.39 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=36.3
Q ss_pred ccccccccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 128 SSSYCCNICFDDVSLEEITTMDCGHY-FCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
.+...|.||++.. .+++.+||||. ||..|... ...||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH------------CSSCTT--TCCCCCC
T ss_pred CCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc------------CCCCCC--CCcchhc
Confidence 3567899999986 57888999999 99999983 148998 8887653
No 68
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.34 E-value=5.3e-05 Score=61.44 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=34.5
Q ss_pred cCCCCCCccceeecCCCCeeEe-ccCccccccccccccCCC
Q 009189 290 TKHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGAATGSDH 329 (540)
Q Consensus 290 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~~~H 329 (540)
.+-||.|...+....+-..++| .|++.||+.|..+|...|
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC
Confidence 3569999999988888888999 599999999999995445
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.96 E-value=0.00016 Score=73.92 Aligned_cols=43 Identities=26% Similarity=0.726 Sum_probs=36.4
Q ss_pred cccccccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHY-FCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
+...|+||++.+ .+++.+||||. ||..|+..+ ..||. |+..+.
T Consensus 294 ~~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcC--CceEEcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 467899999987 67888999999 999998754 48998 888765
No 70
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.96 E-value=0.00027 Score=56.36 Aligned_cols=38 Identities=29% Similarity=0.596 Sum_probs=34.5
Q ss_pred cCCCCC--CccceeecCCCCeeEe------ccCccccccccccccC
Q 009189 290 TKHCPK--CQKLVEKNGGCNLVSC------ICGQPFCWLCGAATGS 327 (540)
Q Consensus 290 ~k~CP~--C~~~IeK~~GCnhm~C------~C~~~FCw~C~~~~~~ 327 (540)
.+-||. |+..|....+...++| .|++.||+.|+..||.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 478997 9999998889999999 6999999999999864
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.71 E-value=0.00025 Score=60.77 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=0.9
Q ss_pred cccccccccccCCCC----------------ceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLE----------------EITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
...+|+||++.+... .++.++|+|.|+..|+..|+... -.||. |+..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPL--DNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCC--CCCeee
Confidence 346899999997421 11234899999999999998762 37998 887654
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.56 E-value=0.0015 Score=49.08 Aligned_cols=48 Identities=13% Similarity=-0.043 Sum_probs=37.9
Q ss_pred ccccccccccCCCCceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 130 SYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 130 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
.+.|+||++.+ .+++.+ ++||.|++.|+..|+... | +||. .+..+...
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~---~-----~cP~--t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDT---G-----NDPI--TNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHH---S-----BCTT--TCCBCCGG
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhC---C-----CCcC--CcCCCChh
Confidence 47899999998 688888 999999999999999752 2 4888 55555543
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.32 E-value=0.0068 Score=60.86 Aligned_cols=121 Identities=20% Similarity=0.229 Sum_probs=69.1
Q ss_pred CCCCCCceeeCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhhCHHHHHHHcCCCcccCCCCC-C
Q 009189 46 PNSCPSSKVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIVETDDVS-S 124 (540)
Q Consensus 46 ~~~~~~~~vlt~~~i~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~~~~~~~~~gl~~~~~~~~~-~ 124 (540)
|.+.+....|-++......++.+++= ..+|+.++-+-. +-..++.-.-++.+...... .
T Consensus 242 Pr~lPe~~FlGpd~~V~~Lr~~l~~N----------------l~~Wd~d~si~e----NL~~IL~i~~fP~p~~~~~~~~ 301 (381)
T 3k1l_B 242 CIASMSLKIIGPTEEVARLRHVLSDG----------------LSNWDSEMNIHK----NLLRMFDLCYFPMPDWSDGPKL 301 (381)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHH----------------HHTCCTTSCHHH----HHHHHTTCSSCCCCCGGGCCSC
T ss_pred CCcCceeEEECChhHhHHHHHHHhhh----------------hhhcCccCCHHH----HHHHHhCccccCCCcccccccc
Confidence 44556788898888766666543221 147887653321 11223221122222111100 0
Q ss_pred -cCCccccccccccccCCC-Ccee-----ecCCCCcccHHHHHHHHHHhhhcCCcccc---cccCcccccccch
Q 009189 125 -SQVSSSYCCNICFDDVSL-EEIT-----TMDCGHYFCNSCWTEHFIVKINEGQSRRI---TCMEHKCNAICDE 188 (540)
Q Consensus 125 -~~~~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i---~CP~~~C~~~~~~ 188 (540)
-......+|+||++.+.. ..+. ...|||.|...|+..|+.+.-...+++.+ .||. |+..++-
T Consensus 302 ~e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 302 DEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp TTCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred cccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 012356789999998754 2221 24799999999999999886544333322 7998 9987763
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.42 E-value=0.0087 Score=46.77 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=37.2
Q ss_pred cccccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
....|.||++.+.... .-..|+|.|...|+..|+.+. + .-.||. |+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~---~---~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSN---A---EPRCPH--CNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTC---S---SCCCTT--TCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhc---C---CCCCCC--CcCcCC
Confidence 4578999999985432 222899999999999999653 1 247998 887654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.98 E-value=0.0033 Score=52.10 Aligned_cols=74 Identities=20% Similarity=0.419 Sum_probs=47.1
Q ss_pred eeec-CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCC-ccceeecCCCCeeEe-ccCccccc
Q 009189 243 EVEC-ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKC-QKLVEKNGGCNLVSC-ICGQPFCW 319 (540)
Q Consensus 243 ~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C-~~~IeK~~GCnhm~C-~C~~~FCw 319 (540)
...| .|+++||..|...+|....-...+.......+. ......|+.+ +.+++ ++| .|+..+|+
T Consensus 18 v~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~-------~~~~~~C~~H~~e~l~-------~fC~~~~~~iC~ 83 (101)
T 2jun_A 18 VKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDS-------HIRGLMCLEHEDEKVN-------MYCVTDDQLICA 83 (101)
T ss_dssp CEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSC-------CSSCCCCSSCSSSCCC-------EEETTTTEEECH
T ss_pred eEECCcCChHHhHHHCHHHhccCCccCCCeeecccccc-------CccCCcCcCcCCCcce-------EECCCCCCccch
Confidence 4778 599999999998777632111111111111100 0123579999 57888 999 59999999
Q ss_pred cccc-cccCCCC
Q 009189 320 LCGA-ATGSDHT 330 (540)
Q Consensus 320 ~C~~-~~~~~H~ 330 (540)
.|.. ..|.+|.
T Consensus 84 ~C~~~~~H~~H~ 95 (101)
T 2jun_A 84 LCKLVGRHRDHQ 95 (101)
T ss_dssp HHHHHTTTSSSC
T ss_pred hcCCCCCcCCCC
Confidence 9986 4555564
No 76
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.26 E-value=0.11 Score=36.21 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 64 QMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 64 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+++.|..-+++.|.++..|+.+|...+||.+..+..|++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456788999999999999999999999999999999985
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.09 E-value=0.18 Score=39.20 Aligned_cols=67 Identities=22% Similarity=0.491 Sum_probs=47.3
Q ss_pred CccccccccccccCCCCceeecC--CCCcccHHHHHHHHHHhhhcCCcccccccCc-cccc-------ccchhHHHHhhc
Q 009189 127 VSSSYCCNICFDDVSLEEITTMD--CGHYFCNSCWTEHFIVKINEGQSRRITCMEH-KCNA-------ICDESKIRCLVR 196 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~-~C~~-------~~~~~~i~~ll~ 196 (540)
....+.|.+|-+.+..+.++..| =+|.||..|-+.++..+-..+ .+.||.. +|.. .|-...|..+|.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~---EvyCPSG~kCpL~gS~~PWAFmqgEIatILg 88 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG---EVYCPSGEKCPLVGSNVPWAFMQGEIATILS 88 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS---CCCCTTSSCCBCSSSSSBCCCCHHHHHHHHS
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC---cEECCCCCccccCCCcCchHHHhhHHHHHhc
Confidence 45678999999998666666654 369999999999999875443 4677762 4543 233556666665
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=93.93 E-value=0.037 Score=45.33 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=30.8
Q ss_pred ccccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 132 CCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 132 ~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
-|++|--.+. .-...+||.|.||.+|...+....- =.||. |+..+.
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~--C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKKGD-------KMCPG--CSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHTTC-------CBCTT--TCCBCS
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhccC-------CCCcC--cCCeee
Confidence 4788854442 2234569999999999998875421 26776 776654
No 79
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=93.74 E-value=0.079 Score=39.43 Aligned_cols=49 Identities=18% Similarity=0.500 Sum_probs=36.0
Q ss_pred cccccccccccCCCCceeecCCC--C---cccHHHHHHHHHHhhhcCCcccccccCcccccccc
Q 009189 129 SSYCCNICFDDVSLEEITTMDCG--H---YFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICD 187 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~ 187 (540)
+...|.||++.. ++...+||. | .|..+|+..|+..+ | ...||. |+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~---~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTIS---R---NTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHH---T---CSBCTT--TCCBCC
T ss_pred CCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhC---C---CCccCC--CCCeee
Confidence 466899999874 333446754 4 89999999999764 2 368998 887654
No 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.49 E-value=0.04 Score=45.39 Aligned_cols=33 Identities=18% Similarity=0.652 Sum_probs=25.7
Q ss_pred cccccccccccCCCCceee--cCCCCcccHHHHHHH
Q 009189 129 SSYCCNICFDDVSLEEITT--MDCGHYFCNSCWTEH 162 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~--l~CgH~fC~~Cl~~y 162 (540)
+...|+||.+.+. .+++. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCC-CCceEECCcCChHHhHHHCHHH
Confidence 4578999997642 34444 799999999999984
No 81
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.43 E-value=0.058 Score=40.20 Aligned_cols=37 Identities=27% Similarity=0.635 Sum_probs=29.5
Q ss_pred ccccCCCCCCCCCeEEeccCccceeecC---CCceecccccCcc
Q 009189 220 RVKWCPSVPHCGNAIRIEVDELREVECA---CGLQFCFRCSYEA 260 (540)
Q Consensus 220 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~---C~~~fC~~C~~~~ 260 (540)
+.+.|| .|+..|...+ +...++|. |++.||+.|+.+|
T Consensus 5 ~~k~CP---~C~~~Iek~~-GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP---KCHVTIEKDG-GCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT---TTCCCCSSCC-SCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc---CCCCeeEeCC-CCCcEEECCCCcCCEEeeCcCCCc
Confidence 457898 6999887654 45568995 9999999999876
No 82
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.24 E-value=0.27 Score=36.80 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 63 AQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 63 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+++.|..-+.+.+.++..|+.+|...+||.+..+..|++
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3567788999999999999999999999999999999995
No 83
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.02 E-value=0.4 Score=39.50 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=41.5
Q ss_pred CHHHHHHHH----------HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhh
Q 009189 56 TKESLLAAQ----------MEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEY 103 (540)
Q Consensus 56 t~~~i~~~~----------~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 103 (540)
|.++|+-++ .++|..|++..|++.+.|+..|...+||++..++.+++.
T Consensus 21 TaeQ~rLAq~i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 21 TAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp SHHHHHHHHHHHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 566665443 578999999999999999999999999999999999953
No 84
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=89.72 E-value=0.83 Score=34.95 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 63 AQMEDLIRVMDLL-SLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 63 ~~~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+...|..|.++| .+..+.+..+|.+|+-|+|.++..+++
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3567899999999 799999999999999999999999996
No 85
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.88 E-value=1 Score=34.17 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 64 QMEDLIRVMDLLS-LKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 64 ~~~~i~~v~~~l~-i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+++.|..-+.+.| .++..|+.+|..++||.+..+..|++
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5667999999999 78999999999999999999999995
No 86
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=87.78 E-value=0.34 Score=32.84 Aligned_cols=32 Identities=19% Similarity=0.515 Sum_probs=26.2
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCccccccccc-cccCCC
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGA-ATGSDH 329 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~-~~~~~H 329 (540)
+.|+.++.+++ ++| .|+..+|+.|.. .-+.+|
T Consensus 4 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 37 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCKDDGTLSCVICRDSLKHASH 37 (42)
T ss_dssp CCCCSSCSSCC-------CCCCSSSSSSCCTTSSCSSCTTC
T ss_pred ccchhhCCeee-------EEeCCCCeEEeccCCCCCCCCCC
Confidence 57999998888 999 599999999987 334444
No 87
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=87.61 E-value=0.94 Score=30.19 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHH
Q 009189 65 MEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVL 100 (540)
Q Consensus 65 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~ 100 (540)
.+.|.+++++ |++...|+..|+..+||++..++.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888887 9999999999999999999887754
No 88
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.53 E-value=0.23 Score=37.00 Aligned_cols=32 Identities=25% Similarity=0.619 Sum_probs=22.7
Q ss_pred CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceeec
Q 009189 247 ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKN 303 (540)
Q Consensus 247 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~ 303 (540)
+||+.||..|... |. ..+...||.|+.++.++
T Consensus 25 ~CgH~fC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 25 VCGHTLCESCVDL------------LF-------------VRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCCEEHHHHHH------------HH-------------HTTSSSCTTTCCCCSSC
T ss_pred CCCCHhHHHHHHH------------HH-------------HcCCCcCCCCCCccccc
Confidence 6999999999622 21 11236899999998754
No 89
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=85.96 E-value=0.31 Score=34.89 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=27.2
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCccccccccc-cccCCCC
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGA-ATGSDHT 330 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~-~~~~~H~ 330 (540)
..||.++.+++ ++| .|+..+|+.|.. .-|.+|.
T Consensus 9 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~ 43 (53)
T 2did_A 9 SLCPQHHEALS-------LFCYEDQEAVCLICAISHTHRAHT 43 (53)
T ss_dssp CBCTTTCCBCC-------EEESSSCSEECHHHHTSSTTTTSC
T ss_pred CcChhhCCeee-------EEeCCCCeEEeccccCCCCCCCCc
Confidence 68999998888 999 599999999986 4455554
No 90
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=85.20 E-value=0.33 Score=34.30 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=27.1
Q ss_pred CCCCCC-ccceeecCCCCeeEe-ccCccccccccccccCCCC
Q 009189 291 KHCPKC-QKLVEKNGGCNLVSC-ICGQPFCWLCGAATGSDHT 330 (540)
Q Consensus 291 k~CP~C-~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~~~H~ 330 (540)
..|+.+ +.++. ++| .|+..+|+.|...-|.+|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~~~~~~iC~~C~~~~H~~H~ 41 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCESCDTLTCRDCQLNAHKDHQ 41 (50)
T ss_dssp CBCSSSTTCBCC-------EEETTTTEEECHHHHHTTTTTCC
T ss_pred CcCcCCCCCCEE-------EEeCCCCEEEecccCCCcCCCCc
Confidence 579999 88888 999 5999999999875455554
No 91
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=85.13 E-value=0.19 Score=39.49 Aligned_cols=51 Identities=27% Similarity=0.677 Sum_probs=31.0
Q ss_pred ccCCCCCCCCCeEEeccCccceeecCCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCcccee
Q 009189 222 KWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVE 301 (540)
Q Consensus 222 ~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 301 (540)
..|| -|-..+... ......|+|||.||..|...+ |. .....||.|+.++.
T Consensus 12 ~~Cp---ICle~~~~~--d~~~~p~~CGH~fC~~Cl~~~-----------~~--------------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECP---LCMEPLEID--DINFFPCTCGYQICRFCWHRI-----------RT--------------DENGLCPACRKPYP 61 (78)
T ss_dssp CBCT---TTCCBCCTT--TTTCCSSTTSCCCCHHHHHHH-----------TT--------------SSCSBCTTTCCBCS
T ss_pred CcCC---ccCccCccc--cccccccCCCCCcCHHHHHHH-----------Hh--------------cCCCCCCCCCCccC
Confidence 3677 465533221 122345789999999996321 10 01268999999887
Q ss_pred e
Q 009189 302 K 302 (540)
Q Consensus 302 K 302 (540)
+
T Consensus 62 ~ 62 (78)
T 1e4u_A 62 E 62 (78)
T ss_dssp S
T ss_pred C
Confidence 4
No 92
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=85.00 E-value=0.73 Score=32.03 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHcCCChHHHHHHHH
Q 009189 65 MEDLIRVMDLLSLKE-QHARTLLIHYRWDVEKVLAVLV 101 (540)
Q Consensus 65 ~~~i~~v~~~l~i~~-~~a~~LL~~~~W~~~~l~~~~~ 101 (540)
.+.|..-++++|++. ..|+.+|-.++||.+..+..|+
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 456788889999995 9999999999999888776544
No 93
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=84.95 E-value=0.45 Score=38.90 Aligned_cols=48 Identities=27% Similarity=0.686 Sum_probs=32.1
Q ss_pred cCCCCCCCCCeEEeccCccceeec-CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCcccee
Q 009189 223 WCPSVPHCGNAIRIEVDELREVEC-ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVE 301 (540)
Q Consensus 223 ~CP~~p~C~~~i~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 301 (540)
.|| .|+..|.+-+ .- +|++.||..|-. .|.....+.||.|+.+|.
T Consensus 3 fC~---~C~~Pi~iyg------RmIPCkHvFCydCa~-------------------------~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCD---KCGLPIKVYG------RMIPCKHVFCYDCAI-------------------------LHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCT---TTCSBCSEEE------EEETTCCEEEHHHHH-------------------------HHHHTTCCBCTTTCCBCS
T ss_pred ecC---ccCCCeEEEe------eeccccccHHHHHHH-------------------------HHHhccCCCCcCcCCeee
Confidence 566 5877654322 22 699999999852 122233489999999998
Q ss_pred ecC
Q 009189 302 KNG 304 (540)
Q Consensus 302 K~~ 304 (540)
+.+
T Consensus 49 rVe 51 (101)
T 3vk6_A 49 RIE 51 (101)
T ss_dssp EEE
T ss_pred eeE
Confidence 643
No 94
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.71 E-value=0.41 Score=35.27 Aligned_cols=33 Identities=27% Similarity=0.731 Sum_probs=27.4
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCccccccccc-cccCCCC
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGA-ATGSDHT 330 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~-~~~~~H~ 330 (540)
+.|+.++.+++ ++| .|+..+|+.|.. ..|.+|.
T Consensus 15 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp SBCTTTCCBCC-------EEETTTCSEECHHHHTSTTTTTCC
T ss_pred ccChhhCceee-------eecCCCCcEEecccCCCCcCCCCc
Confidence 57999999888 999 599999999987 4555664
No 95
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.59 E-value=1.6 Score=32.94 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+.|..-+.+.|.++..|+..|...+||.+..++.|++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4588888999999999999999999999999999984
No 96
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=83.49 E-value=0.43 Score=36.55 Aligned_cols=33 Identities=27% Similarity=0.632 Sum_probs=27.4
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCccccccccccccCCCC
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGAATGSDHT 330 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~~~H~ 330 (540)
..|+.++.+++ ++| .|+..+|+.|....|.+|.
T Consensus 19 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~H~~H~ 52 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQTDQTCICYLCMFQEHKNHS 52 (72)
T ss_dssp CBCTTTCCBCC-------EEESSSCCEECHHHHHTTTSSSC
T ss_pred CcCcccCCceE-------EEeCCCCeEEccccCCCCCCCCC
Confidence 68999998888 999 5999999999875455553
No 97
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.98 E-value=0.45 Score=35.46 Aligned_cols=49 Identities=22% Similarity=0.571 Sum_probs=30.4
Q ss_pred cccCCCCCCCCCeEEeccCccceeecCCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccce
Q 009189 221 VKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLV 300 (540)
Q Consensus 221 ~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~I 300 (540)
...|| -|...+.. . +.-+||+.||..|... | +......||.|+.++
T Consensus 15 ~~~C~---IC~~~~~~---p---~~~~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 15 KYKCE---KCHLVLCS---P---KQTECGHRFCESCMAA------------L-------------LSSSSPKCTACQESI 60 (66)
T ss_dssp CEECT---TTCCEESS---C---CCCSSSCCCCHHHHHH------------H-------------HTTSSCCCTTTCCCC
T ss_pred CCCCC---CCChHhcC---e---eECCCCCHHHHHHHHH------------H-------------HHhCcCCCCCCCcCC
Confidence 34687 47655421 1 2237999999998632 2 212236899999988
Q ss_pred eec
Q 009189 301 EKN 303 (540)
Q Consensus 301 eK~ 303 (540)
..+
T Consensus 61 ~~~ 63 (66)
T 2ecy_A 61 VKD 63 (66)
T ss_dssp CTT
T ss_pred Chh
Confidence 653
No 98
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=82.73 E-value=0.69 Score=44.35 Aligned_cols=50 Identities=22% Similarity=0.423 Sum_probs=37.4
Q ss_pred cccccccccccCCCCceeec-CCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccch
Q 009189 129 SSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDE 188 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~ 188 (540)
....|.||.+.+.. -... .|+|.|...|+..|+... ...+||. |+..++.
T Consensus 179 ~i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~------~~~~CP~--C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTC------SSCBCTT--TCCBCCS
T ss_pred CCCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhC------CCCCCCC--CCCCCCC
Confidence 35689999999753 2334 499999999999998652 2358997 8887654
No 99
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=82.04 E-value=0.5 Score=33.05 Aligned_cols=33 Identities=18% Similarity=0.594 Sum_probs=26.4
Q ss_pred CCCCCCc-cceeecCCCCeeEe-ccCccccccccc-cccCCCC
Q 009189 291 KHCPKCQ-KLVEKNGGCNLVSC-ICGQPFCWLCGA-ATGSDHT 330 (540)
Q Consensus 291 k~CP~C~-~~IeK~~GCnhm~C-~C~~~FCw~C~~-~~~~~H~ 330 (540)
..|+.++ .++. ++| .|+...||.|.. .-|.+|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp CBCSSSTTSBCC-------EEETTTTEEECHHHHHHSTTTTSC
T ss_pred CcCCCCCCcccc-------EEcCCCCeeEcccccCCCcCCCCc
Confidence 5799998 8888 999 599999999974 3455554
No 100
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.68 E-value=0.64 Score=35.59 Aligned_cols=33 Identities=24% Similarity=0.742 Sum_probs=24.1
Q ss_pred CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceeecCC
Q 009189 247 ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGG 305 (540)
Q Consensus 247 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~G 305 (540)
+|++.||..|... |. ..+ ..||.|+..+....|
T Consensus 43 ~C~H~fh~~Ci~~------------w~-------------~~~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 43 PCNHEFHAKCVDK------------WL-------------KAN-RTCPICRADSGPSSG 75 (75)
T ss_dssp TTTEEEETTHHHH------------HH-------------HHC-SSCTTTCCCCCCCCC
T ss_pred CCCCHhHHHHHHH------------HH-------------HcC-CcCcCcCCcCCCCCC
Confidence 6999999998632 32 221 589999999887665
No 101
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=81.67 E-value=0.33 Score=42.24 Aligned_cols=44 Identities=34% Similarity=0.779 Sum_probs=28.7
Q ss_pred cCCCCCCCCCeEEeccCccceeecCCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCcccee
Q 009189 223 WCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVE 301 (540)
Q Consensus 223 ~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 301 (540)
.|| -|...+. . -+.-+|||.||..|... |.. ....||.|+.+|.
T Consensus 55 ~C~---iC~~~~~----~--~~~~~CgH~fc~~Ci~~------------~~~--------------~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCI---ICSEYFI----E--AVTLNCAHSFCSYCINE------------WMK--------------RKIECPICRKDIK 98 (138)
T ss_dssp BCT---TTCSBCS----S--EEEETTSCEEEHHHHHH------------HTT--------------TCSBCTTTCCBCC
T ss_pred CCc---ccCcccC----C--ceECCCCCCccHHHHHH------------HHH--------------cCCcCCCCCCcCC
Confidence 587 4765432 1 14458999999999633 221 1157999998886
No 102
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=81.48 E-value=0.67 Score=36.52 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=28.1
Q ss_pred CCCCCC-ccceeecCCCCeeEe-ccCccccccccc-cccCCCCcc
Q 009189 291 KHCPKC-QKLVEKNGGCNLVSC-ICGQPFCWLCGA-ATGSDHTWT 332 (540)
Q Consensus 291 k~CP~C-~~~IeK~~GCnhm~C-~C~~~FCw~C~~-~~~~~H~~~ 332 (540)
..||.+ +.+++ ++| .|+...|+.|.. ..|.+|...
T Consensus 19 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~~~ 56 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCVSDDQLICALCKLVGRHRDHQVA 56 (84)
T ss_dssp CCCSSCSSSCCC-------EEETTTTEEECHHHHHTSTTTTCCBC
T ss_pred CcCcCcCCcccc-------EEcCCCCceEcccCcCCCCCCCCCcc
Confidence 579999 68888 999 599999999987 455666443
No 103
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=81.03 E-value=0.67 Score=34.42 Aligned_cols=34 Identities=18% Similarity=0.516 Sum_probs=27.5
Q ss_pred CCCCCC-ccceeecCCCCeeEe-ccCcccccccccc-ccCCCCc
Q 009189 291 KHCPKC-QKLVEKNGGCNLVSC-ICGQPFCWLCGAA-TGSDHTW 331 (540)
Q Consensus 291 k~CP~C-~~~IeK~~GCnhm~C-~C~~~FCw~C~~~-~~~~H~~ 331 (540)
..||.+ +.++. ++| .|+...|+.|... -|.+|..
T Consensus 9 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~~ 45 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKACEV 45 (64)
T ss_dssp CCCSSCTTCCCC-------SEESSSCCCCCSHHHHSSSTTSSCE
T ss_pred CcCcCcCCCccc-------eEcCcCCceeCccccCCCcCCCCCe
Confidence 579999 88888 999 5999999999753 4556643
No 104
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=79.89 E-value=0.61 Score=39.62 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=29.0
Q ss_pred cCCCCCCCCCeEEeccCccceeecCCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCcccee
Q 009189 223 WCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVE 301 (540)
Q Consensus 223 ~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 301 (540)
.|| -|...+.. -+.-+|||.||..|... |+..+...||.|+.++.
T Consensus 54 ~C~---IC~~~~~~------p~~~~CgH~fC~~Ci~~-------------------------~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 54 QCI---CCQELVFR------PITTVCQHNVCKDCLDR-------------------------SFRAQVFSCPACRYDLG 98 (124)
T ss_dssp BCT---TTSSBCSS------EEECTTSCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCC
T ss_pred CCC---cCChHHcC------cEEeeCCCcccHHHHHH-------------------------HHhHCcCCCCCCCccCC
Confidence 687 47654421 13337999999999632 22222358999998886
No 105
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=79.82 E-value=0.73 Score=35.48 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=28.8
Q ss_pred ccCCCCCCCCCeEEeccCccceeecCCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCcccee
Q 009189 222 KWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVE 301 (540)
Q Consensus 222 ~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 301 (540)
..|| -|...+.. -+.-+||+.||..|... |+..+...||.|+.++.
T Consensus 9 ~~C~---IC~~~~~~------Pv~~~CgH~fc~~Ci~~-------------------------~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 9 FRCP---ISLELMKD------PVIVSTGQTYERSSIQK-------------------------WLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSCT---TTSCCCSS------EEEETTTEEEEHHHHHH-------------------------HHTTTCCBCTTTCCBCS
T ss_pred CCCC---CccccccC------CEEcCCCCeecHHHHHH-------------------------HHHHCcCCCCCCcCCCC
Confidence 3677 46654321 14447999999998632 22222368999988775
No 106
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=79.43 E-value=0.7 Score=34.56 Aligned_cols=28 Identities=36% Similarity=0.834 Sum_probs=22.9
Q ss_pred cCCCCCCccceeecCCCCeeEeccCccccccc
Q 009189 290 TKHCPKCQKLVEKNGGCNLVSCICGQPFCWLC 321 (540)
Q Consensus 290 ~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C 321 (540)
..+|..|++.+...+ +.|+|+..||-.-
T Consensus 15 ~~rC~~C~kkvgl~~----f~CrCg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTG----FMCRCGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTTC----EECSSSCEECTTT
T ss_pred CCcChhhCCccCccC----EEeecCCEecccc
Confidence 478999999887553 8899999999753
No 107
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=78.43 E-value=1.3 Score=31.34 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=21.1
Q ss_pred ccCCCCCCcc-ceeecCCCCeeEe-ccCccc
Q 009189 289 HTKHCPKCQK-LVEKNGGCNLVSC-ICGQPF 317 (540)
Q Consensus 289 ~~k~CP~C~~-~IeK~~GCnhm~C-~C~~~F 317 (540)
+...||.|+. .+.-+..=..+.| .||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3468999988 7776666567888 477654
No 108
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=78.26 E-value=1.3 Score=39.49 Aligned_cols=45 Identities=27% Similarity=0.690 Sum_probs=29.4
Q ss_pred cCCCCCCCCCeEEeccCccceeec-CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCcccee
Q 009189 223 WCPSVPHCGNAIRIEVDELREVEC-ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVE 301 (540)
Q Consensus 223 ~CP~~p~C~~~i~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 301 (540)
.|| -|...+.. .+.. +|||.||..|... | +......||.|+.++.
T Consensus 56 ~C~---IC~~~~~~------p~~~~~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 56 MCP---ICLDMLKN------TMTTKECLHRFCADCIIT------------A-------------LRSGNKECPTCRKKLV 101 (165)
T ss_dssp BCT---TTSSBCSS------EEEETTTCCEEEHHHHHH------------H-------------HHTTCCBCTTTCCBCC
T ss_pred CCc---ccChHhhC------cCEeCCCCChhHHHHHHH------------H-------------HHhCcCCCCCCCCcCC
Confidence 687 47654321 2555 7999999999622 2 2222368999998875
No 109
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.11 E-value=1.1 Score=34.02 Aligned_cols=34 Identities=26% Similarity=0.603 Sum_probs=23.9
Q ss_pred eec-CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceeec
Q 009189 244 VEC-ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKN 303 (540)
Q Consensus 244 v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~ 303 (540)
+.- +|||.||..|.. .|.. . ...||.|+.++.+.
T Consensus 29 ~~~~~CgH~fC~~Ci~------------~~~~-------------~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 29 TTITECLHTFCKSCIV------------RHFY-------------Y-SNRCPKCNIVVHQT 63 (72)
T ss_dssp EECSSSCCEECHHHHH------------HHHH-------------H-CSSCTTTCCCCCSS
T ss_pred CEECCCCCHHHHHHHH------------HHHH-------------c-CCcCCCcCcccCcc
Confidence 444 699999999862 2221 1 26899999998754
No 110
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=78.06 E-value=2.7 Score=29.60 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 65 MEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 65 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+.|.++.+. |.+...|+..|+..+||++...+.+++
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4456666655 999999999999999999999998774
No 111
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=78.01 E-value=0.81 Score=38.22 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=23.0
Q ss_pred CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCcccee
Q 009189 247 ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVE 301 (540)
Q Consensus 247 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 301 (540)
+|||.||..|...|-.. ....||.|+..+.
T Consensus 32 ~CgH~fC~~Ci~~~~~~-------------------------~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVEK-------------------------ASLCCPFCRRRVS 61 (115)
T ss_dssp TTSCEECHHHHCCCCCT-------------------------TTSBCTTTCCBCH
T ss_pred CCCCHHhHHHHHHHHhH-------------------------CcCCCCCCCcccC
Confidence 79999999998765431 1168999998876
No 112
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=77.29 E-value=0.55 Score=38.39 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=24.8
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~ 325 (540)
-.||-|...+. +-++| .|||.||+.|...|
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~ 53 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRW 53 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHH
Confidence 57999998876 24777 59999999999887
No 113
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=76.59 E-value=1.4 Score=33.88 Aligned_cols=30 Identities=30% Similarity=0.742 Sum_probs=21.5
Q ss_pred CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceee
Q 009189 247 ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEK 302 (540)
Q Consensus 247 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 302 (540)
+|++.||..|... |. ..+ ..||.|+..+..
T Consensus 35 ~C~H~fc~~Ci~~------------~~-------------~~~-~~CP~Cr~~~~~ 64 (78)
T 2ect_A 35 PCNHLFHDSCIVP------------WL-------------EQH-DSCPVCRKSLTG 64 (78)
T ss_dssp TTSCEEETTTTHH------------HH-------------TTT-CSCTTTCCCCCC
T ss_pred CCCCeecHHHHHH------------HH-------------HcC-CcCcCcCCccCC
Confidence 6999999999733 22 111 589999988763
No 114
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=76.42 E-value=1.4 Score=31.15 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=9.8
Q ss_pred CCCceeccccc
Q 009189 247 ACGLQFCFRCS 257 (540)
Q Consensus 247 ~C~~~fC~~C~ 257 (540)
+|++.||..|.
T Consensus 26 ~CgH~fc~~Ci 36 (55)
T 2ecm_A 26 PCGHLLHRTCY 36 (55)
T ss_dssp TTSCEEETTHH
T ss_pred CCCCcccHHHH
Confidence 59999999986
No 115
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=76.22 E-value=1.7 Score=34.15 Aligned_cols=33 Identities=30% Similarity=0.836 Sum_probs=21.4
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCc-----cccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQ-----PFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~-----~FCw~C~~~~ 325 (540)
..||.|+.+|+.++| +.+| .|+. -||..|+.+.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHH
Confidence 467777777777766 4557 4654 3677776653
No 116
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=76.18 E-value=1 Score=33.72 Aligned_cols=28 Identities=36% Similarity=0.802 Sum_probs=22.3
Q ss_pred cCCCCCCccceeecCCCCeeEeccCccccccc
Q 009189 290 TKHCPKCQKLVEKNGGCNLVSCICGQPFCWLC 321 (540)
Q Consensus 290 ~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C 321 (540)
..+|..|++.+...+ +.|+||..||-.-
T Consensus 15 ~~rC~~C~kkvgl~~----f~CrCg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMG----FKCKCGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTSC----EECTTSCEECSSS
T ss_pred CCcChhhCCcccccC----eEeecCCEecccC
Confidence 368999999877543 7899999999653
No 117
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.11 E-value=1.4 Score=31.65 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=21.2
Q ss_pred CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceee
Q 009189 247 ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEK 302 (540)
Q Consensus 247 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 302 (540)
+||+.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 59999999997541 1689999988763
No 118
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=76.09 E-value=4.8 Score=27.26 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHH
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLV 101 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~ 101 (540)
+.|.++.+ +|++...|...|+..+||++...+.++
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 45677776 599999999999999999999988776
No 119
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=75.58 E-value=1.2 Score=34.35 Aligned_cols=27 Identities=41% Similarity=0.898 Sum_probs=22.8
Q ss_pred CCCCCCccceeecCCCCeeEeccCccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLC 321 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C 321 (540)
.+|..|++.+...+ +.|+|+..||-.=
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~H 52 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGLH 52 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSSS
T ss_pred CcChhhCCcccccC----eecCCCCEechhc
Confidence 58999999888665 8999999999653
No 120
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=75.53 E-value=1.6 Score=36.70 Aligned_cols=29 Identities=38% Similarity=0.771 Sum_probs=19.1
Q ss_pred cccCCCCCCCCCeEEeccCccceeecCCCceecccccC
Q 009189 221 VKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSY 258 (540)
Q Consensus 221 ~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 258 (540)
...|| -|...+.. -+..+||+.||..|..
T Consensus 18 ~~~C~---IC~~~~~~------p~~~~CgH~fC~~Ci~ 46 (118)
T 3hct_A 18 KYECP---ICLMALRE------AVQTPCGHRFCKACII 46 (118)
T ss_dssp GGBCT---TTCSBCSS------EEECTTSCEEEHHHHH
T ss_pred CCCCC---cCChhhcC------eEECCcCChhhHHHHH
Confidence 34687 57655421 1445899999999863
No 121
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=75.40 E-value=1 Score=32.74 Aligned_cols=28 Identities=29% Similarity=0.569 Sum_probs=19.1
Q ss_pred cCCCCCCccceeecCCCCeeEe-ccCccc
Q 009189 290 TKHCPKCQKLVEKNGGCNLVSC-ICGQPF 317 (540)
Q Consensus 290 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~F 317 (540)
.+.||+|+..+.-...-+.++| +|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 4899999974432223467899 698874
No 122
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=75.12 E-value=1.5 Score=32.51 Aligned_cols=29 Identities=34% Similarity=0.896 Sum_probs=20.9
Q ss_pred CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCcccee
Q 009189 247 ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVE 301 (540)
Q Consensus 247 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 301 (540)
+||+.||..|... |. .. ...||.|+.++.
T Consensus 23 ~C~H~fc~~Ci~~------------~~-------------~~-~~~CP~Cr~~~~ 51 (68)
T 1chc_A 23 PCLHAFCYVCITR------------WI-------------RQ-NPTCPLCKVPVE 51 (68)
T ss_dssp TTTEEESTTHHHH------------HH-------------HH-SCSTTTTCCCCC
T ss_pred CCCCeeHHHHHHH------------HH-------------hC-cCcCcCCChhhH
Confidence 6999999998632 22 11 168999998876
No 123
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=74.23 E-value=1.8 Score=32.92 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=22.0
Q ss_pred cCCCCCCccceeecCCCCeeEe-ccCccc
Q 009189 290 TKHCPKCQKLVEKNGGCNLVSC-ICGQPF 317 (540)
Q Consensus 290 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~F 317 (540)
.-.||.|+.+++-+.+...++| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 3589999999998887788888 466554
No 124
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=74.00 E-value=1.4 Score=39.48 Aligned_cols=32 Identities=34% Similarity=0.721 Sum_probs=22.1
Q ss_pred ccccCCCCCCCCCeEEeccCccceeecCCCceecccccCcc
Q 009189 220 RVKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEA 260 (540)
Q Consensus 220 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~ 260 (540)
....|| -|...+.. -+.++||+.||..|...|
T Consensus 17 ~~~~C~---IC~~~~~~------pv~~~CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 17 SKYECP---ICLMALRE------AVQTPCGHRFCKACIIKS 48 (170)
T ss_dssp GGGBCT---TTCSBCSS------EEECTTSCEEEHHHHHHH
T ss_pred CCCCCC---CCChhhcC------cEECCCCCHHHHHHHHHH
Confidence 334687 57765421 156789999999998654
No 125
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.73 E-value=0.64 Score=33.93 Aligned_cols=33 Identities=24% Similarity=0.659 Sum_probs=26.9
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCccccccccc-cccCCCC
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGA-ATGSDHT 330 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~-~~~~~H~ 330 (540)
..|+.++.+++ ++| .|+..+|+.|.. .-|.+|.
T Consensus 19 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~~~eH~~H~ 53 (57)
T 2egm_A 19 GICPKHQEALK-------LFCEVDEEAICVVCRESRSHKQHS 53 (57)
T ss_dssp SBCTTTCCBCC-------EEETTTTEEECHHHHHSHHHHSSC
T ss_pred CcChhhCceee-------EEcCCCCcEEecccCCCCCCCCCc
Confidence 57999998888 999 599999999986 3445553
No 126
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=73.71 E-value=1.2 Score=34.21 Aligned_cols=27 Identities=37% Similarity=0.898 Sum_probs=22.4
Q ss_pred cCCCCCCccceeecCCCCeeEeccCcccccc
Q 009189 290 TKHCPKCQKLVEKNGGCNLVSCICGQPFCWL 320 (540)
Q Consensus 290 ~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~ 320 (540)
..+|..|++.+...+ +.|+|+..||-.
T Consensus 25 ~~RC~~C~kkvgL~~----f~CrCg~~FCs~ 51 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTG----FKCRCGSTFCGT 51 (74)
T ss_dssp CCBCSSSCCBCTTTC----EECTTSCEECTT
T ss_pred CccchhhcCcccccc----eEeccCCEeccc
Confidence 478999998877664 899999999964
No 127
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.59 E-value=1.1 Score=31.94 Aligned_cols=27 Identities=33% Similarity=0.770 Sum_probs=17.9
Q ss_pred ccCCCCCCcccee-ecCCCCeeEe-ccCcc
Q 009189 289 HTKHCPKCQKLVE-KNGGCNLVSC-ICGQP 316 (540)
Q Consensus 289 ~~k~CP~C~~~Ie-K~~GCnhm~C-~C~~~ 316 (540)
..+.||+|+..+. .+.+ +.+.| +||+.
T Consensus 18 ~~k~CP~CG~~~fm~~~~-~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHG-DRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECS-SEEECSSSCCE
T ss_pred ecccCCCCCCceEEecCC-CeEECCCCCCE
Confidence 3478999987443 2222 67888 68864
No 128
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=72.79 E-value=1.1 Score=34.47 Aligned_cols=26 Identities=27% Similarity=0.802 Sum_probs=21.4
Q ss_pred CCCce-ecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceee
Q 009189 247 ACGLQ-FCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEK 302 (540)
Q Consensus 247 ~C~~~-fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 302 (540)
+|||. ||..|...| +.||.|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 79999 999996432 589999998874
No 129
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.73 E-value=0.86 Score=33.47 Aligned_cols=31 Identities=35% Similarity=0.841 Sum_probs=24.4
Q ss_pred CCCCCCccceeecCCCCeeEeccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 326 (540)
-.||-|...+.. -++-.|||.||+.|+..|-
T Consensus 21 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCSS-----CEECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEeCCCCcchHHHHHHHH
Confidence 579999887763 2444899999999999873
No 130
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=72.47 E-value=1.5 Score=34.68 Aligned_cols=34 Identities=24% Similarity=0.608 Sum_probs=27.4
Q ss_pred cCCCCCCccceeecCCCCeeEe-ccCcccccccccccc
Q 009189 290 TKHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGAATG 326 (540)
Q Consensus 290 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~ 326 (540)
...||.|+....+..+-..+.| .|++.|- ++.|.
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a---ggay~ 61 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFT---GGSYK 61 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEE---CCSSS
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEec---CCEec
Confidence 4689999999999888889999 4998773 55553
No 131
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.27 E-value=2 Score=32.57 Aligned_cols=31 Identities=35% Similarity=0.816 Sum_probs=21.9
Q ss_pred ecCCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCcccee
Q 009189 245 ECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVE 301 (540)
Q Consensus 245 ~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 301 (540)
..+|++.||..|... |. ..+ ..||.|+.+|.
T Consensus 33 ~~~C~H~f~~~Ci~~------------~~-------------~~~-~~CP~Cr~~~~ 63 (74)
T 2ep4_A 33 ICPCKHAFHRKCLIK------------WL-------------EVR-KVCPLCNMPVL 63 (74)
T ss_dssp EETTTEEEEHHHHHH------------HH-------------HHC-SBCTTTCCBCS
T ss_pred EcCCCCEecHHHHHH------------HH-------------HcC-CcCCCcCcccc
Confidence 347999999998632 32 222 58999999876
No 132
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=71.82 E-value=2 Score=32.17 Aligned_cols=33 Identities=30% Similarity=0.798 Sum_probs=25.8
Q ss_pred ccccccccccccCCCCceeecCC-CCcccHHHHHHHH
Q 009189 128 SSSYCCNICFDDVSLEEITTMDC-GHYFCNSCWTEHF 163 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~y~ 163 (540)
.+..-|.||.++- .+.-+.| |-.||..||+..-
T Consensus 6 ee~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDA---TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCC---CEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCC---eEEecCCCCceehHHHHHHHc
Confidence 3566799999883 2445689 7899999999875
No 133
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=71.69 E-value=2 Score=37.83 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=17.9
Q ss_pred ccCCCCCCCCCeEEeccCccceeecCCCceeccccc
Q 009189 222 KWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCS 257 (540)
Q Consensus 222 ~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~ 257 (540)
..|| -|...+.. -+.-+||+.||..|.
T Consensus 79 ~~C~---IC~~~~~~------pv~~~CgH~fC~~Ci 105 (150)
T 1z6u_A 79 FMCV---CCQELVYQ------PVTTECFHNVCKDCL 105 (150)
T ss_dssp TBCT---TTSSBCSS------EEECTTSCEEEHHHH
T ss_pred CEee---cCChhhcC------CEEcCCCCchhHHHH
Confidence 3687 47654321 133479999999996
No 134
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=71.08 E-value=6.4 Score=30.23 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+.|.++.+ +|++...|+..|+..+||++..++.++.
T Consensus 31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34556665 5999999999999999999999998873
No 135
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.70 E-value=1.2 Score=33.66 Aligned_cols=32 Identities=34% Similarity=0.816 Sum_probs=24.4
Q ss_pred CCCCCCccceeecCCCCeeEeccCccccccccccccC
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGS 327 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~ 327 (540)
..||-|...+.. -++-.|||.||+.|...|-.
T Consensus 21 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCSS-----EEECTTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccCC-----eEEcCCCChhhHHHHHHHHH
Confidence 579999887662 24447999999999988743
No 136
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=67.54 E-value=2.2 Score=32.58 Aligned_cols=31 Identities=29% Similarity=0.746 Sum_probs=23.6
Q ss_pred CCCCCCccceeecCCCCeeEeccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 326 (540)
-.||-|...+.. -++-.|||.||..|...|-
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~ 43 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSN 43 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHH
Confidence 469999877653 2444799999999999874
No 137
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=67.17 E-value=2.5 Score=35.14 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=17.6
Q ss_pred cCCCCCCCCCeEEeccCccceeecCCCceeccccc
Q 009189 223 WCPSVPHCGNAIRIEVDELREVECACGLQFCFRCS 257 (540)
Q Consensus 223 ~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~ 257 (540)
.|| -|...+.. .+.-+||+.||..|.
T Consensus 25 ~C~---IC~~~~~~------p~~~~CgH~fC~~Ci 50 (116)
T 1rmd_A 25 SCQ---ICEHILAD------PVETSCKHLFCRICI 50 (116)
T ss_dssp BCT---TTCSBCSS------EEECTTSCEEEHHHH
T ss_pred CCC---CCCcHhcC------cEEcCCCCcccHHHH
Confidence 687 47655421 134479999999996
No 138
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.95 E-value=11 Score=29.65 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 67 DLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 67 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.|.++.+ +|++...|+..|+..+||++..++.++.
T Consensus 32 ~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 32 SINQLVY-MGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHH-HSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3455555 4999999999999999999999998884
No 139
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=66.92 E-value=2.2 Score=35.33 Aligned_cols=36 Identities=17% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceeec
Q 009189 247 ACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKN 303 (540)
Q Consensus 247 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~ 303 (540)
+|+|.||..|... |...... .....||-|+..+.+.
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~~---------~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGNK---------DGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTCC---------SSCCBCTTTCCBSSSC
T ss_pred CCCCcccHHHHHH------------HHHcccC---------CCCCcCCCCCCccCCC
Confidence 5999999999733 3211000 1126899999888643
No 140
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.30 E-value=2.2 Score=35.64 Aligned_cols=30 Identities=23% Similarity=0.631 Sum_probs=22.6
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~ 325 (540)
-.||-|...+.. -++- .|||.||+.|...|
T Consensus 23 ~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~ 53 (117)
T 1jm7_B 23 LRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDC 53 (117)
T ss_dssp TSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGG
T ss_pred CCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHH
Confidence 589999887753 2333 68888888888876
No 141
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=66.10 E-value=3.5 Score=33.33 Aligned_cols=33 Identities=33% Similarity=0.943 Sum_probs=27.5
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCcc-----ccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQP-----FCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~-----FCw~C~~~~ 325 (540)
..||.|+.+++.++| +.+| .|+.. +|.-|..+.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHH
Confidence 689999999999888 7789 58865 699998764
No 142
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.02 E-value=9.7 Score=28.16 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+.|.++.+ +|++...|+..|+..+||++..++.+++
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 11 DCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34566666 5999999999999999999999998874
No 143
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.55 E-value=1.3 Score=34.78 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCCCCCccceeecCCCCeeEeccCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 325 (540)
-.||-|...+..... .-+.-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~ 49 (88)
T 2ct2_A 16 LECPICMESFTEEQL-RPKLLHCGHTICRQCLEKL 49 (88)
T ss_dssp CBCTTTCCBCCTTSS-CEEECSSSCEEEHHHHHHH
T ss_pred CCCccCCccccccCC-CeEECCCCChhhHHHHHHH
Confidence 579999887764321 1233368888888888876
No 144
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.19 E-value=13 Score=27.64 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+.|.++.+ +|++...|+..|+..+||++..++.+++
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34556665 6999999999999999999999998874
No 145
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=65.18 E-value=1.8 Score=33.00 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=23.6
Q ss_pred CCCCCCccceeecCCCCeeEec-cCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCI-CGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~~~ 326 (540)
-.||-|...+.. -++-. |||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 16 LLCLICKDIMTD-----AVVIPCCGNSYCDECIRTAL 47 (74)
T ss_dssp GSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHH
T ss_pred CCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHH
Confidence 579999887752 35556 89999999988773
No 146
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=63.65 E-value=1.8 Score=35.62 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~ 326 (540)
-.||-|...+.. -++. .|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYL 47 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHH
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHHHH
Confidence 579999887753 4666 799999999988763
No 147
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=63.57 E-value=2.9 Score=33.12 Aligned_cols=28 Identities=36% Similarity=0.708 Sum_probs=21.8
Q ss_pred cCCCCCCccceeecCCCCeeEeccCcccccc
Q 009189 290 TKHCPKCQKLVEKNGGCNLVSCICGQPFCWL 320 (540)
Q Consensus 290 ~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~ 320 (540)
..+|..|++.+--.. -+.|+||..||-.
T Consensus 25 ~~rC~~C~kkvgl~~---~f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLAT---SFECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSS---CEECTTCCEECTT
T ss_pred CccchhhCCeecccC---CeEcCCCCEeccc
Confidence 368999998776532 2899999999964
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=63.50 E-value=4.5 Score=38.83 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=11.2
Q ss_pred eecCCCceeccccc
Q 009189 244 VECACGLQFCFRCS 257 (540)
Q Consensus 244 v~C~C~~~fC~~C~ 257 (540)
|+-+||++||..|.
T Consensus 222 v~~~~gh~f~~~~i 235 (281)
T 2c2l_A 222 CITPSGITYDRKDI 235 (281)
T ss_dssp EECSSCCEEETTHH
T ss_pred eECCCCCEECHHHH
Confidence 44469999999985
No 149
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.97 E-value=1.8 Score=32.59 Aligned_cols=31 Identities=29% Similarity=0.680 Sum_probs=23.1
Q ss_pred CCCCCCccceeecCCCCeeEeccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 326 (540)
..||-|...+.. -++-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCT
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHH
Confidence 579999877642 2444799999999988874
No 150
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=62.66 E-value=1.4 Score=34.98 Aligned_cols=30 Identities=23% Similarity=0.604 Sum_probs=23.2
Q ss_pred CCCCCCccceeecCCCCeeEec-cCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCI-CGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~~ 325 (540)
-.||-|...+.. -++-. |||.||..|+..|
T Consensus 14 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~ 44 (92)
T 3ztg_A 14 LLCLICKDIMTD-----AVVIPCCGNSYCDECIRTA 44 (92)
T ss_dssp TEETTTTEECSS-----CEECTTTCCEECHHHHHHH
T ss_pred CCCCCCChhhcC-----ceECCCCCCHHHHHHHHHH
Confidence 479999877652 25566 9999999999876
No 151
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=62.40 E-value=1.9 Score=30.44 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=25.6
Q ss_pred CCCCCCccceeecCCCCeeEec-cCccccccccccccC
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCI-CGQPFCWLCGAATGS 327 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~~~~ 327 (540)
..||-|...+..... .+.-. ||+.||..|+..|-.
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLG 41 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTT
T ss_pred CcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHH
Confidence 579999887764332 24444 999999999998853
No 152
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=62.39 E-value=1.5 Score=32.87 Aligned_cols=36 Identities=31% Similarity=0.562 Sum_probs=24.0
Q ss_pred CCCCCCccceeec--CCCCeeEeccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKN--GGCNLVSCICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~--~GCnhm~C~C~~~FCw~C~~~~~ 326 (540)
..||-|...+... +|-.-+.-.|||.||+.|...|-
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 48 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH
Confidence 5799998877642 22222333688888888888773
No 153
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.52 E-value=1.6 Score=31.19 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=23.7
Q ss_pred CCCCCCccceeecCCCCeeEeccCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 325 (540)
-.||-|...+... +.-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-----EeCCCCCccCHHHHHHH
Confidence 5799998877632 33469999999999987
No 154
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.03 E-value=14 Score=29.41 Aligned_cols=49 Identities=27% Similarity=0.714 Sum_probs=34.2
Q ss_pred cccccccccccCCC---Cceeec--CCCCcccHHHHHHHHHHhhhcCCcccccccCccccccc
Q 009189 129 SSYCCNICFDDVSL---EEITTM--DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAIC 186 (540)
Q Consensus 129 ~~~~C~IC~e~~~~---~~~~~l--~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~ 186 (540)
....|.||-+++-. .+++.. .|+-..|+.|+.- ..++|. -.||+ |+..+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY----ErkeG~---q~Cpq--CktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY----ERREGT---QNCPQ--CKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH----HHHTSC---SSCTT--TCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH----HHhccC---ccccc--cCCcc
Confidence 45789999999633 234333 6888999999763 345565 58998 87655
No 155
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=60.69 E-value=24 Score=25.59 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 63 AQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 63 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+.+-|..++...|++..-+...|...+||-++.+..|.+
T Consensus 5 ~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 5 VQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5677899999999999999999999999999999998874
No 156
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=59.98 E-value=2.4 Score=32.74 Aligned_cols=30 Identities=33% Similarity=0.798 Sum_probs=22.7
Q ss_pred CCCCCCccceeecCCCCeeEeccCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 325 (540)
-.||-|...+... +.-.|||.||+.|+..|
T Consensus 20 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecw_A 20 VTCPICLELLKEP-----VSADCNHSFCRACITLN 49 (85)
T ss_dssp TSCTTTCSCCSSC-----EECTTSCCBCHHHHHHH
T ss_pred CCCcCCChhhCcc-----eeCCCCCHHHHHHHHHH
Confidence 5799998876532 44569999999998876
No 157
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=59.60 E-value=19 Score=25.52 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 65 MEDLIRVMDLLSL-KEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 65 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+.|.++.++ |+ +...++..|+..+||++..++.++.
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4456666654 88 8999999999999999999998874
No 158
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=59.32 E-value=15 Score=26.03 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHHH
Q 009189 66 EDLIRVMDLLSL-KEQHARTLLIHYRWDVEKVLAVLV 101 (540)
Q Consensus 66 ~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~ 101 (540)
+.|.++.+ +|+ +...+...|+..+||++..++.++
T Consensus 14 ~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 14 QQLEQLSA-MGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34566665 488 899999999999999999998876
No 159
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.93 E-value=2.5 Score=31.52 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=22.2
Q ss_pred CCCCCCccceeecCCCCeeEeccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 326 (540)
..||-|...+.. +.-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~ 45 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWS 45 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSS
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHH
Confidence 579999877653 344688888888888764
No 160
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.76 E-value=42 Score=35.21 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--CChhHHHHHHHHHHHHHHHHHHHHH
Q 009189 450 LFEDQQQQFEANIEKLSSFLDEKFHL--YNEDEIKDLKLRVIALSATTDNLCR 500 (540)
Q Consensus 450 lfe~~q~~le~~~e~L~~~le~~~~~--~~~~~~~~~r~~~~~l~~~~~~~~~ 500 (540)
.+-.+-.+|++.++.|.+.|...+.+ .+..-|.+++.+|+.|..-++...+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555544322 1223366777777777766665544
No 161
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=58.39 E-value=2.2 Score=34.44 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=24.2
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~ 326 (540)
-.||-|...+.. -++. .|||.||..|...|-
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHH
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHH
Confidence 589999887763 3566 699999999988874
No 162
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=58.10 E-value=2 Score=31.20 Aligned_cols=36 Identities=31% Similarity=0.562 Sum_probs=22.8
Q ss_pred CCCCCCccceeec--CCCCeeEeccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKN--GGCNLVSCICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~--~GCnhm~C~C~~~FCw~C~~~~~ 326 (540)
..||-|...+... .+-.-+.-.|||.||..|...|-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 41 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 41 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH
Confidence 4688888776543 12111233688888888888763
No 163
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=57.95 E-value=31 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 63 AQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 63 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+.+-|..++...|++..-+...|...+||-++.+..|.+
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4677889999999999999999999999999999988763
No 164
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.13 E-value=2.8 Score=32.40 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=21.2
Q ss_pred CCCCCCccceeecCCCCeeEeccCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 325 (540)
-.||-|...+.. -++-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 45 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVTKCRHYFCESCALEH 45 (81)
T ss_dssp SBCSSSCSBCCS-----EEECTTSCEEEHHHHHHH
T ss_pred CCCcCCCchhcC-----eeEccCCCHhHHHHHHHH
Confidence 579999887753 233358888888887766
No 165
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=56.89 E-value=12 Score=36.29 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 62 AAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 62 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
..+++.|.+-+++.|.++..|+..|..++||.+..++.|++
T Consensus 13 ~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~ 53 (270)
T 3bq3_A 13 SPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYD 53 (270)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34677799999999999999999999999999999999994
No 166
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=56.88 E-value=11 Score=38.61 Aligned_cols=32 Identities=25% Similarity=0.700 Sum_probs=22.9
Q ss_pred cCCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceee
Q 009189 246 CACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEK 302 (540)
Q Consensus 246 C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 302 (540)
-+|||.||..|.. .|. ......||.|+.+|..
T Consensus 348 lpCGH~FC~~Ci~------------~wl-------------~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 348 EPCGHLMCTSCLT------------SWQ-------------ESEGQGCPFCRCEIKG 379 (389)
T ss_dssp ETTCCEECHHHHH------------HHH-------------HHTCSBCTTTCCBCCE
T ss_pred eCCCChhhHHHHH------------HHH-------------hcCCCCCCCCCCccCC
Confidence 3799999999862 222 2123789999998874
No 167
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=56.00 E-value=2.4 Score=36.97 Aligned_cols=30 Identities=23% Similarity=0.759 Sum_probs=23.6
Q ss_pred CCCCCCccceeecCCCCeeEeccCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 325 (540)
-.||-|...+.. -++..||+.||..|...|
T Consensus 32 ~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~ 61 (141)
T 3knv_A 32 YLCSACRNVLRR-----PFQAQCGHRYCSFCLASI 61 (141)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHH
T ss_pred cCCCCCChhhcC-----cEECCCCCccCHHHHHHH
Confidence 479999887753 255679999999998886
No 168
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.26 E-value=3 Score=32.09 Aligned_cols=30 Identities=37% Similarity=0.844 Sum_probs=21.7
Q ss_pred CCCCCCccceeecCCCCeeEeccCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 325 (540)
-.||-|...+... ++-.|||.||..|+..|
T Consensus 20 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecv_A 20 VTCPICLELLTQP-----LSLDCGHSFCQACLTAN 49 (85)
T ss_dssp CCCTTTCSCCSSC-----BCCSSSCCBCTTHHHHH
T ss_pred CCCCCCCcccCCc-----eeCCCCCHHHHHHHHHH
Confidence 5799998877531 33368888888888765
No 169
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=55.16 E-value=3.7 Score=30.49 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=22.7
Q ss_pred CCCCCCccceeecCCCCeeEeccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 326 (540)
..||-|...+.... ..+.-.|||.||+.|+..|-
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHH
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHH
Confidence 68999987765322 12223588888888888763
No 170
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=54.71 E-value=7.3 Score=29.66 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=20.2
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCcccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFC 318 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FC 318 (540)
-.||.|+.+++-+.+=..++| .||..|=
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceec
Confidence 579999999987655456788 4665553
No 171
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=54.70 E-value=6.9 Score=29.62 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=18.8
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPF 317 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~F 317 (540)
-.||.|+.+++-+.+=..++| .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 579999999886654455777 365444
No 172
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.26 E-value=3.1 Score=34.19 Aligned_cols=31 Identities=32% Similarity=0.694 Sum_probs=22.9
Q ss_pred CCCCCCccceeecCCCCeeEeccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 326 (540)
-.||-|...+.. -++-.|||.||+.|...|-
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 52 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLL 52 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHH
Confidence 589999887752 1333689999999988763
No 173
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.76 E-value=2.5 Score=31.18 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=23.3
Q ss_pred CCCCCCccceeecC--CCCeeEeccCcccccccccccc
Q 009189 291 KHCPKCQKLVEKNG--GCNLVSCICGQPFCWLCGAATG 326 (540)
Q Consensus 291 k~CP~C~~~IeK~~--GCnhm~C~C~~~FCw~C~~~~~ 326 (540)
..||-|...+.... +-.-+.-.|||.||..|...|-
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 53 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 53 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH
Confidence 57999988766432 2111223588888888888773
No 174
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.38 E-value=31 Score=26.27 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 68 LIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 68 i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
|.++.+ +|++...|+..|+..+||++..++.+++
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 444554 5999999999999999999999998874
No 175
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=52.06 E-value=8.3 Score=29.26 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=19.0
Q ss_pred CCCCCCccceeecCCCCeeEec-cCccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCI-CGQPF 317 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~-C~~~F 317 (540)
-.||.|+.+++-..+=..++|. ||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 5899999998865544557773 65444
No 176
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=51.81 E-value=11 Score=33.17 Aligned_cols=19 Identities=37% Similarity=0.934 Sum_probs=16.0
Q ss_pred CCCCCCccceeecCCCCeeEec--cCc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCI--CGQ 315 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~--C~~ 315 (540)
|.||+|..+++ ++-|+ ||+
T Consensus 111 k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 111 KSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp SBCSSSCCBEE------EECCCTBTTB
T ss_pred CCCCCCCccee------eEeccCcCCC
Confidence 89999999998 68885 754
No 177
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=51.33 E-value=6.2 Score=34.08 Aligned_cols=29 Identities=17% Similarity=0.497 Sum_probs=21.9
Q ss_pred ccCCCCCCcccee-ec---CCCCeeEec-cCccc
Q 009189 289 HTKHCPKCQKLVE-KN---GGCNLVSCI-CGQPF 317 (540)
Q Consensus 289 ~~k~CP~C~~~Ie-K~---~GCnhm~C~-C~~~F 317 (540)
..+.||.|+.++- +. .|.+.+.|+ |++.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3589999998763 22 368899995 99865
No 178
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.77 E-value=29 Score=27.22 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+.|.++.+ +|++...|+..|+..+||++...+.+++
T Consensus 31 ~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 31 AALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34556666 6999999999999999999999998874
No 179
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.55 E-value=4.2 Score=30.65 Aligned_cols=28 Identities=39% Similarity=0.765 Sum_probs=21.1
Q ss_pred cCCCCCCccceeecC--CCCeeEeccCcccccc
Q 009189 290 TKHCPKCQKLVEKNG--GCNLVSCICGQPFCWL 320 (540)
Q Consensus 290 ~k~CP~C~~~IeK~~--GCnhm~C~C~~~FCw~ 320 (540)
..+|..|++.+...+ | +.|+||..||-.
T Consensus 15 ~~rC~~C~kk~gL~~~eg---f~CrCg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQEL---GSCRCGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHHHHH---HCCSSSCCCCTT
T ss_pred CCcchhhCCeecccccCc---eEecCCCEehhc
Confidence 368999998887431 1 479999999964
No 180
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.29 E-value=2.2e+02 Score=28.68 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=4.5
Q ss_pred HHHHHHhhhh
Q 009189 502 LYECIETDLL 511 (540)
Q Consensus 502 ~~~~~e~~l~ 511 (540)
|..++...|+
T Consensus 188 L~qv~a~~ll 197 (390)
T 1deq_A 188 LEQVIAINLL 197 (390)
T ss_pred HHhhhhhccc
Confidence 4444444444
No 181
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.13 E-value=14 Score=29.33 Aligned_cols=53 Identities=28% Similarity=0.684 Sum_probs=35.4
Q ss_pred CCCCeEEeccCccceeecC-CCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceeecCCC
Q 009189 229 HCGNAIRIEVDELREVECA-CGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGC 306 (540)
Q Consensus 229 ~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~GC 306 (540)
-|+--|-........|.|. |+...|..|. ++. ++...+.||.|+.+..+..|+
T Consensus 21 iCGD~VG~~~~Ge~FVAC~eC~FPvCrpCy----------EYE---------------rkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 21 ICGDQIGLTVEGDLFVACNECGFPACRPCY----------EYE---------------RREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SSCCBCCBCSSSSBCCSCSSSCCCCCHHHH----------HHH---------------HHTSCSSCTTTCCCCCCCTTC
T ss_pred cccCccccCCCCCEEEeeeccCChhhHHHH----------HHH---------------HhccCccccccCCccccccCC
Confidence 4666555555555568895 9999998875 221 122348999999998765554
No 182
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=48.70 E-value=10 Score=31.64 Aligned_cols=28 Identities=14% Similarity=0.407 Sum_probs=21.8
Q ss_pred cCCCCCCccceeec----CCCCeeEec-cCccc
Q 009189 290 TKHCPKCQKLVEKN----GGCNLVSCI-CGQPF 317 (540)
Q Consensus 290 ~k~CP~C~~~IeK~----~GCnhm~C~-C~~~F 317 (540)
.+.||.|+.++.-. .|.+.+.|+ |++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 47899999876532 378899994 99976
No 183
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.34 E-value=33 Score=27.00 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 65 MEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 65 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+.|.++.+ +|++...|+..|+..+|+++..++.+++
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455677777 5999999999999999999999998884
No 184
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.01 E-value=28 Score=25.44 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=33.8
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 65 MEDLIRVMDLL-SLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 65 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.++|..+.+++ +++....+..|...+.|++..++.+.+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45677788899 899999999999999999999998874
No 185
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.80 E-value=36 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCHH-HHHHHHHHcCCChHHHHHHHHh
Q 009189 66 EDLIRVMDLLSLKEQ-HARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~-~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+.|.++.++ |++.. .++..|+..+||+++.++.++.
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 345666655 88654 4699999999999999998884
No 186
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=47.54 E-value=15 Score=28.72 Aligned_cols=26 Identities=27% Similarity=0.668 Sum_probs=19.8
Q ss_pred CCCCCccceeecCCCCeeEec-cC--ccccccccccc
Q 009189 292 HCPKCQKLVEKNGGCNLVSCI-CG--QPFCWLCGAAT 325 (540)
Q Consensus 292 ~CP~C~~~IeK~~GCnhm~C~-C~--~~FCw~C~~~~ 325 (540)
.||.|+.++++ |+ || ..||-.|++-.
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCC
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEe
Confidence 79999999995 63 76 46888887653
No 187
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=47.42 E-value=11 Score=28.50 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=19.6
Q ss_pred CCCCCCccceeecCCCCeeEec-cCccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCI-CGQPF 317 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~-C~~~F 317 (540)
-.||.|+.+++-...=+.+.|. ||..|
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 5899999999876544557883 66555
No 188
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=47.20 E-value=3.3 Score=32.93 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCCCCccceeecCCCCeeEeccCccccccccccccC
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGS 327 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~ 327 (540)
..||-|...+.... ..+.-.|||.||+.|...|-.
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHT
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHH
Confidence 46999987665332 122336999999999988843
No 189
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=46.77 E-value=10 Score=29.68 Aligned_cols=40 Identities=25% Similarity=0.655 Sum_probs=25.7
Q ss_pred HHHHHhc-cCCCCCCccceeecCCCCeeEec-cCcccccccccc
Q 009189 283 VNYIAVH-TKHCPKCQKLVEKNGGCNLVSCI-CGQPFCWLCGAA 324 (540)
Q Consensus 283 ~~~i~~~-~k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~ 324 (540)
..|+... ...|+.|+...-- .--.-.|+ ||.-||..|...
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSI--SRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBT--TBCCEECTTTCCEECSGGGCE
T ss_pred CccccCccCCcccCcCCcccC--ccccccCCCCCCEEChHHhCC
Confidence 4576533 5789999987641 12235785 999999999864
No 190
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=46.50 E-value=8.4 Score=38.83 Aligned_cols=26 Identities=27% Similarity=0.910 Sum_probs=21.6
Q ss_pred CCCce-ecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceee
Q 009189 247 ACGLQ-FCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEK 302 (540)
Q Consensus 247 ~C~~~-fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 302 (540)
+|||. ||..|...+ +.||-|+.+|.+
T Consensus 312 pCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred CCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 79999 999997432 589999999875
No 191
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=45.10 E-value=7.5 Score=33.53 Aligned_cols=31 Identities=23% Similarity=0.543 Sum_probs=20.1
Q ss_pred CCccccCCCCCCCCCeEEeccC---ccceeecC-CCce
Q 009189 218 NKRVKWCPSVPHCGNAIRIEVD---ELREVECA-CGLQ 251 (540)
Q Consensus 218 ~~~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-C~~~ 251 (540)
...+++|| .|++.+.+..+ ......|. |++.
T Consensus 21 ~~~~~FCP---eCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 21 MTTFRFCR---DCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp -CCCCBCT---TTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred ccCCeeCC---CCCCEeeECccCCCceeEEECCCCCCc
Confidence 34678998 69999876643 23346674 7664
No 192
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=44.93 E-value=26 Score=31.74 Aligned_cols=30 Identities=7% Similarity=-0.030 Sum_probs=18.5
Q ss_pred CccccCCCCCCCCCeEEeccCccceeecCCCceeccccc
Q 009189 219 KRVKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCS 257 (540)
Q Consensus 219 ~~~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~ 257 (540)
+....|| -|...+. ++ |.-+||++||..|-
T Consensus 104 p~~f~CP---I~~elm~---DP---V~~~~Ghtfer~~I 133 (179)
T 2f42_A 104 PDYLCGK---ISFELMR---EP---CITPSGITYDRKDI 133 (179)
T ss_dssp CGGGBCT---TTCSBCS---SE---EECTTSCEEEHHHH
T ss_pred cHhhccc---CccccCC---CC---eECCCCCEECHHHH
Confidence 3445787 4655432 11 33379999999875
No 193
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=44.18 E-value=27 Score=27.42 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCCcCCCcchHHHHhhhcCCCCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHh---CC
Q 009189 1 MGEYRSSDDDYDYDYDYYDDDDEVDFVDDDENAAELEAAVEPEIPPNSCPSSKVITKESLLAAQMEDLIRVMDLL---SL 77 (540)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlt~~~i~~~~~~~i~~v~~~l---~i 77 (540)
|-+.+|+++|+++.+|.+-+.+.. ++.+++++ +..||-++|.-.++.. .|++-| .|
T Consensus 1 mvsg~st~Ed~e~~~e~evse~~~--veE~~eee-----------------fpalsiqDIElLmKnT--EIWd~Ll~gkI 59 (104)
T 4ayb_Q 1 MVSGMSTEEEKEGTNDEEVSEERE--VEETSEEE-----------------FPKLSIQDIELLMKNT--EIWDNLLNGKI 59 (104)
T ss_dssp ---------------------------------------------------CCCCCHHHHHHHHHHH--HHHHHHHHCCS
T ss_pred CCCccccccccccCCccccccccc--eecccccc-----------------CccccHHHHHHHHhch--HHHHHHHcCcc
Confidence 567889998888777766654443 22222233 3458899998887774 666655 58
Q ss_pred CHHHHHHHH
Q 009189 78 KEQHARTLL 86 (540)
Q Consensus 78 ~~~~a~~LL 86 (540)
+...|..+.
T Consensus 60 SIeEAKK~F 68 (104)
T 4ayb_Q 60 SVDEAKRLF 68 (104)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 888888875
No 194
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=43.41 E-value=57 Score=28.29 Aligned_cols=48 Identities=19% Similarity=0.508 Sum_probs=33.3
Q ss_pred cccccccccccCCCCceeec-CCCCcccHHHHHHHHH----Hhh--hcCCcccccccCccccc
Q 009189 129 SSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFI----VKI--NEGQSRRITCMEHKCNA 184 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~----~~i--~~g~~~~i~CP~~~C~~ 184 (540)
....|.||.+- .+.... .|-..||..|+..-+. ..| ..| +-.||. |..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~---~W~C~~--C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN---QWYCYI--CHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT---CCCCTT--TCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC---CCEeec--ccC
Confidence 46789999875 455444 7899999999997663 222 234 368988 654
No 195
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=43.06 E-value=31 Score=25.68 Aligned_cols=39 Identities=13% Similarity=0.030 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhhC
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYG 104 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~ 104 (540)
++|..|.+..|++..+|+..|...+||.++.++.+.+++
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 457788899999999999999999999999999776443
No 196
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.10 E-value=55 Score=25.05 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 65 MEDLIRVMDLLSL-KEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 65 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+.|.++.++ |+ ....++..|+..+||+++.++.++.
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456677765 77 5777799999999999999998883
No 197
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.00 E-value=46 Score=24.55 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-ChHHHHHHHHh
Q 009189 67 DLIRVMDLLSLKEQHARTLLIHYRW-DVEKVLAVLVE 102 (540)
Q Consensus 67 ~i~~v~~~l~i~~~~a~~LL~~~~W-~~~~l~~~~~~ 102 (540)
.|.++.+ +|++...|+..|+..+| |++..++-+++
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4666666 69999999999999999 99999988773
No 198
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.77 E-value=46 Score=25.34 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-CChHHHHHHHHh
Q 009189 67 DLIRVMDLLSLKEQHARTLLIHYR-WDVEKVLAVLVE 102 (540)
Q Consensus 67 ~i~~v~~~l~i~~~~a~~LL~~~~-W~~~~l~~~~~~ 102 (540)
.|.++.+ +|++...|+..|+..+ |+++..++.+++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 12 VIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp HHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 4556666 6999999999999888 689999998885
No 199
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=41.70 E-value=56 Score=24.95 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHH
Q 009189 451 FEDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSATTDN 497 (540)
Q Consensus 451 fe~~q~~le~~~e~L~~~le~~~~~~~~~~~~~~r~~~~~l~~~~~~ 497 (540)
+|..-..||..++.|.-.+.+.+.++... -.++|+++..|...+..
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ss-Q~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESM-QQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 45555667777777777777665543332 45688888888765443
No 200
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.67 E-value=7.9 Score=29.93 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=20.3
Q ss_pred CCCCCccceeecCCCCeeEeccCccccccccccccC
Q 009189 292 HCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGS 327 (540)
Q Consensus 292 ~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~ 327 (540)
.||.|..... .+.+..+.-.|+|.|+..|+..|-.
T Consensus 28 ~C~iC~~~~~-~~~~~~~~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 28 ACLRCQAENK-QEDCVVVWGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp CCTTHHHHTC-TTTCCEEEETTSCEEEHHHHHHHTT
T ss_pred cCcccccccC-CCceEEEeCCCCCccChHHHHHHHH
Confidence 4444443332 2333334446888888888888744
No 201
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=40.96 E-value=64 Score=22.08 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCChHHHHHHHH
Q 009189 65 MEDLIRVMDLLSLK-EQHARTLLIHYRWDVEKVLAVLV 101 (540)
Q Consensus 65 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~~~~~ 101 (540)
.+.|.++.+. |++ ...+...|+..+||+++.++.++
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4556677764 775 66679999999999999999876
No 202
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=40.68 E-value=46 Score=23.00 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHH
Q 009189 452 EDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSA 493 (540)
Q Consensus 452 e~~q~~le~~~e~L~~~le~~~~~~~~~~~~~~r~~~~~l~~ 493 (540)
|..-..||..++.|.-.+.+.+.++... -.++|+++..|..
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ss-q~KlKqRit~lE~ 44 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNAT-QMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 4445566777777666666655443322 3467788777754
No 203
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=40.66 E-value=1.2e+02 Score=28.45 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009189 450 LFEDQQQQFEANIEKLSSFLDEKFHLY---NEDEIKDLKLRVIALSATTDNLCRNLYECIETDL 510 (540)
Q Consensus 450 lfe~~q~~le~~~e~L~~~le~~~~~~---~~~~~~~~r~~~~~l~~~~~~~~~~~~~~~e~~l 510 (540)
+.+..+..++..++.|...+.-....+ ...-+.++|.++.-...-.+..+..+++.+...|
T Consensus 166 ~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l 229 (243)
T 2a01_A 166 YSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSF 229 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Confidence 345566666667777777665332222 2223445555555444444444444444444433
No 204
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=40.00 E-value=13 Score=31.47 Aligned_cols=28 Identities=18% Similarity=0.479 Sum_probs=21.6
Q ss_pred cCCCCCCccceee----cCCCCeeEec-cCccc
Q 009189 290 TKHCPKCQKLVEK----NGGCNLVSCI-CGQPF 317 (540)
Q Consensus 290 ~k~CP~C~~~IeK----~~GCnhm~C~-C~~~F 317 (540)
.+.||.|+.++.- ..+.+.+.|+ |++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 4789999986652 2678899994 99866
No 205
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=39.97 E-value=19 Score=30.23 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=16.6
Q ss_pred CCceecccccCc-cCCCCCchh
Q 009189 248 CGLQFCFRCSYE-AHSPCSCYM 268 (540)
Q Consensus 248 C~~~fC~~C~~~-~H~~~~C~~ 268 (540)
|....|+.|+.. -|....|..
T Consensus 20 Cp~~~C~~Cg~~~gH~~~~C~~ 41 (124)
T 2lli_A 20 CPHIICSYCGATDDHYSRHCPK 41 (124)
T ss_dssp TTSCCCTTTCCTTTCCTTTGGG
T ss_pred CcCCcCcCCCCcCCccCcccCC
Confidence 667889999887 788877763
No 206
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=39.94 E-value=11 Score=32.05 Aligned_cols=39 Identities=26% Similarity=0.573 Sum_probs=27.3
Q ss_pred HHHHh-ccCCCCCCccceeecCCCCeeEec-cCcccccccccc
Q 009189 284 NYIAV-HTKHCPKCQKLVEKNGGCNLVSCI-CGQPFCWLCGAA 324 (540)
Q Consensus 284 ~~i~~-~~k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~ 324 (540)
.|+.. ....|+.|+.+.-- .--.-.|+ ||.-||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCcccc--ccccccCCCCCeEEChHHhCC
Confidence 46543 35689999987641 12235895 999999999865
No 207
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=39.46 E-value=19 Score=28.21 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=28.4
Q ss_pred ceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCCCCCCccceeecCCCCeeEec--cCcccccccccc
Q 009189 250 LQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGCNLVSCI--CGQPFCWLCGAA 324 (540)
Q Consensus 250 ~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~GCnhm~C~--C~~~FCw~C~~~ 324 (540)
..+|+.|...-|....|... .+|..|+..-... -.|. =...+||.|++.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~---------------------~rcY~c~~~gh~~-----~~c~~p~~~~~CYnCG~~ 55 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI---------------------WRAYILVDDNEKA-----KPKVLPFHTIYCYNCGGK 55 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG---------------------TCCCCBC------------------CCCBCSSSSCB
T ss_pred cCCCCCCCCCCCccccCCCc---------------------ccccccccCCccc-----ccccCCCCCCeecccCCC
Confidence 45799999999998888742 2577776532110 1232 245789999995
No 208
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=39.20 E-value=19 Score=33.90 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=16.8
Q ss_pred hHHHHHHHhccCCCCCCcc-ceee
Q 009189 280 SETVNYIAVHTKHCPKCQK-LVEK 302 (540)
Q Consensus 280 ~~~~~~i~~~~k~CP~C~~-~IeK 302 (540)
.-+..|+..| -.||+|+. ++.+
T Consensus 25 VLTE~Wv~~n-~yCPnCG~~~l~~ 47 (257)
T 4esj_A 25 ILTEDWVYRQ-SYCPNCGNNPLNH 47 (257)
T ss_dssp HHHHHHHHHH-CCCTTTCCSSCEE
T ss_pred hhhHHHHHHC-CcCCCCCChhhhh
Confidence 4467898877 48999998 6754
No 209
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=37.94 E-value=14 Score=33.32 Aligned_cols=24 Identities=25% Similarity=0.890 Sum_probs=19.9
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCcc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQP 316 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~ 316 (540)
-.||+|+.++.+.+ ++|.| .||.-
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 47999999998866 99999 58753
No 210
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=37.86 E-value=21 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=15.3
Q ss_pred CCCCCCccceeecCCCCeeEec
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCI 312 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~ 312 (540)
-.||.|+.+++-.. ..+.|.
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~ 30 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICT 30 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEEC
T ss_pred eeCCCCCCcceecC--CEEEcC
Confidence 58999999988666 456664
No 211
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=37.03 E-value=7.2 Score=32.86 Aligned_cols=26 Identities=15% Similarity=0.405 Sum_probs=0.0
Q ss_pred cCCCCeeEeccCccccccccccccCC
Q 009189 303 NGGCNLVSCICGQPFCWLCGAATGSD 328 (540)
Q Consensus 303 ~~GCnhm~C~C~~~FCw~C~~~~~~~ 328 (540)
.+.|.-+.-.|++.|+..|...|-..
T Consensus 74 ~~~~~v~~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 74 SEECTVAWGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp --------------------------
T ss_pred ccccccccCCcCceEcHHHHHHHHHc
Confidence 34555566679999999999988543
No 212
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.38 E-value=29 Score=27.98 Aligned_cols=16 Identities=25% Similarity=0.810 Sum_probs=12.6
Q ss_pred CCCCCCccceeecCCC
Q 009189 291 KHCPKCQKLVEKNGGC 306 (540)
Q Consensus 291 k~CP~C~~~IeK~~GC 306 (540)
-.||.|+.++|+-..|
T Consensus 62 a~CPdC~q~LevLkAC 77 (101)
T 2jne_A 62 ALCPDCHQPLQVLKAC 77 (101)
T ss_dssp EECTTTCSBCEEEEET
T ss_pred ccCcchhhHHHHHHHh
Confidence 4799999999965444
No 213
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=35.50 E-value=97 Score=22.82 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHH
Q 009189 64 QMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLV 101 (540)
Q Consensus 64 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~ 101 (540)
+...++.-..-++..|+-|+-||---+|++...+..|-
T Consensus 17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~e 54 (73)
T 2l2d_A 17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYE 54 (73)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHH
Confidence 45566777778999999999999999999999888765
No 214
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=35.33 E-value=18 Score=33.04 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=17.8
Q ss_pred CCCCCCccce-eecCCCCeeEe-ccCccccc
Q 009189 291 KHCPKCQKLV-EKNGGCNLVSC-ICGQPFCW 319 (540)
Q Consensus 291 k~CP~C~~~I-eK~~GCnhm~C-~C~~~FCw 319 (540)
+.||+|+..+ -....+.| +| +|++-|++
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp EECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred ccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 7899999653 33445544 77 67666643
No 215
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=35.19 E-value=34 Score=28.66 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=14.7
Q ss_pred eecccccCccCCCCCchh
Q 009189 251 QFCFRCSYEAHSPCSCYM 268 (540)
Q Consensus 251 ~fC~~C~~~~H~~~~C~~ 268 (540)
..|+.|...-|....|..
T Consensus 43 ~~C~~Cg~~GH~~~~C~~ 60 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPH 60 (124)
T ss_dssp SCSSSSSCSSSSTTTSCC
T ss_pred ccccccCCCCCccccCcC
Confidence 479999998898877764
No 216
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.90 E-value=24 Score=25.59 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=14.2
Q ss_pred CCCCCCcc-ceeecCCCCeeEe-ccC
Q 009189 291 KHCPKCQK-LVEKNGGCNLVSC-ICG 314 (540)
Q Consensus 291 k~CP~C~~-~IeK~~GCnhm~C-~C~ 314 (540)
..||.|+. .|.....=.-+.| .||
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CG 37 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECG 37 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCC
Confidence 57999976 5554433334666 354
No 217
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.87 E-value=18 Score=35.01 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=18.4
Q ss_pred CCCCCCccceee--cCCCCeeEe-ccCc
Q 009189 291 KHCPKCQKLVEK--NGGCNLVSC-ICGQ 315 (540)
Q Consensus 291 k~CP~C~~~IeK--~~GCnhm~C-~C~~ 315 (540)
++||.|+.+|++ .+|=+-.+| .|+.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 789999999997 356555666 4653
No 218
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.84 E-value=16 Score=31.08 Aligned_cols=35 Identities=23% Similarity=0.565 Sum_probs=24.1
Q ss_pred ccccccccccccCCCCce-eec-CCCCcccHHHHHHH
Q 009189 128 SSSYCCNICFDDVSLEEI-TTM-DCGHYFCNSCWTEH 162 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~-~~l-~CgH~fC~~Cl~~y 162 (540)
.....|.+|...|..... .-. .||+.||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 345679999988753221 222 79999999997643
No 219
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=34.46 E-value=15 Score=35.51 Aligned_cols=25 Identities=28% Similarity=0.753 Sum_probs=18.9
Q ss_pred CCCCCCccceee--cCCCCeeEe-ccCc
Q 009189 291 KHCPKCQKLVEK--NGGCNLVSC-ICGQ 315 (540)
Q Consensus 291 k~CP~C~~~IeK--~~GCnhm~C-~C~~ 315 (540)
++||.|+.+|++ .+|=+-.+| .|+.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 789999999997 466666677 4653
No 220
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=34.09 E-value=79 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-CChHHHHHHHHh
Q 009189 67 DLIRVMDLLSLKEQHARTLLIHYR-WDVEKVLAVLVE 102 (540)
Q Consensus 67 ~i~~v~~~l~i~~~~a~~LL~~~~-W~~~~l~~~~~~ 102 (540)
.|.++.+ +|++...|+..|++.+ ||++...+.+++
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 32 IVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4555665 6999999999988874 999999998874
No 221
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.82 E-value=55 Score=24.10 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHc-CCChHHHHHHHHh
Q 009189 67 DLIRVMDLLSLKEQHARTLLIHY-RWDVEKVLAVLVE 102 (540)
Q Consensus 67 ~i~~v~~~l~i~~~~a~~LL~~~-~W~~~~l~~~~~~ 102 (540)
.|.++.+ +|++...|+..|+.. +||++..++.+++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 12 ALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 3445555 699999999999999 7999999998874
No 222
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.59 E-value=10 Score=24.51 Aligned_cols=14 Identities=21% Similarity=0.757 Sum_probs=11.3
Q ss_pred ccccccccccccCC
Q 009189 128 SSSYCCNICFDDVS 141 (540)
Q Consensus 128 ~~~~~C~IC~e~~~ 141 (540)
++.|.||||+..+.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 46799999998874
No 223
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=33.29 E-value=1e+02 Score=22.30 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCChHHHHHHHHh
Q 009189 65 MEDLIRVMDLLSLK-EQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 65 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+.|.++.+. |++ ...++..|+..+||+++.++.++.
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4556777765 774 667799999999999999998873
No 224
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=33.28 E-value=14 Score=25.69 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+.|.++.+ +|++...|...|...+||++...+-+++
T Consensus 6 eaI~rL~~-mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKA-LGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34555553 4999999999999999999998887763
No 225
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=33.27 E-value=16 Score=35.45 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=18.4
Q ss_pred CCCCCCccceee--cCCCCeeEe-ccC
Q 009189 291 KHCPKCQKLVEK--NGGCNLVSC-ICG 314 (540)
Q Consensus 291 k~CP~C~~~IeK--~~GCnhm~C-~C~ 314 (540)
++||.|+.+|+| -+|=+-.+| .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 699999999997 456666667 465
No 226
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.10 E-value=13 Score=28.30 Aligned_cols=23 Identities=26% Similarity=0.755 Sum_probs=12.9
Q ss_pred CCCCCccceeecCCCCeeEec-cCc
Q 009189 292 HCPKCQKLVEKNGGCNLVSCI-CGQ 315 (540)
Q Consensus 292 ~CP~C~~~IeK~~GCnhm~C~-C~~ 315 (540)
.|+.|+..++...+ .-+.|+ ||+
T Consensus 30 ~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 30 ICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp ECSSSCCEECCCTT-STTCCSSSCC
T ss_pred ECCCCCCcceeCCC-CCccCCCCCc
Confidence 67777777664322 335553 554
No 227
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.91 E-value=19 Score=28.17 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=24.6
Q ss_pred CccccccccccccCCCCce-eec-CCCCcccHHHHHH
Q 009189 127 VSSSYCCNICFDDVSLEEI-TTM-DCGHYFCNSCWTE 161 (540)
Q Consensus 127 ~~~~~~C~IC~e~~~~~~~-~~l-~CgH~fC~~Cl~~ 161 (540)
..+...|.+|...|....- .-. .||+.||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3456789999988754321 122 7999999999764
No 228
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=32.85 E-value=17 Score=35.17 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=18.1
Q ss_pred CCCCCCccceee--cCCCCeeEe-ccC
Q 009189 291 KHCPKCQKLVEK--NGGCNLVSC-ICG 314 (540)
Q Consensus 291 k~CP~C~~~IeK--~~GCnhm~C-~C~ 314 (540)
++||.|+.+|++ -+|=+-.+| .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 789999999997 356555666 465
No 229
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=32.45 E-value=48 Score=30.34 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+.|.++.+ .|++.+.|+..|...+||++...+.+++
T Consensus 165 ekV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 165 KKIENLCA-MGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34444433 4999999999999999999999998773
No 230
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=32.09 E-value=18 Score=34.89 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=18.2
Q ss_pred CCCCCCccceee--cCCCCeeEe-ccC
Q 009189 291 KHCPKCQKLVEK--NGGCNLVSC-ICG 314 (540)
Q Consensus 291 k~CP~C~~~IeK--~~GCnhm~C-~C~ 314 (540)
++||.|+.+|++ -+|=+-.+| .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 689999999987 456666677 465
No 231
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=31.92 E-value=19 Score=28.56 Aligned_cols=35 Identities=23% Similarity=0.561 Sum_probs=24.4
Q ss_pred ccccccccccccCCCCce-ee-cCCCCcccHHHHHHH
Q 009189 128 SSSYCCNICFDDVSLEEI-TT-MDCGHYFCNSCWTEH 162 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~-~~-l~CgH~fC~~Cl~~y 162 (540)
.....|.+|...|....- .. -.||+.||..|....
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345679999988753221 22 279999999997653
No 232
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.75 E-value=1.8e+02 Score=22.45 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHH
Q 009189 377 ESKMKETMEDNIKILEECSTASSKDFVWLFNGVDRLFRS 415 (540)
Q Consensus 377 e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~~~ 415 (540)
+.+++..+++++...+. +++.|+..-+.|...
T Consensus 9 eDKLRrrl~E~~~q~qa-------El~sLrrT~~EL~~G 40 (78)
T 3iv1_A 9 SDKLRWRMKEEMDRAQA-------ELNALKRTEEDLKKG 40 (78)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHhh
Confidence 34566666666655554 555555555555443
No 233
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.50 E-value=22 Score=33.06 Aligned_cols=32 Identities=31% Similarity=0.663 Sum_probs=23.8
Q ss_pred CCCCCCccceeecCCCCeeEec-cCcccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCI-CGQPFCWLCGAA 324 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~ 324 (540)
..|+.|+...- -.--.-.|| ||.-||..|...
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccC--CcccccccCCcCCEEChHHhCC
Confidence 68999988764 112236896 999999999864
No 234
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.38 E-value=19 Score=28.03 Aligned_cols=33 Identities=30% Similarity=0.806 Sum_probs=23.2
Q ss_pred cccccccccccCCCCce-ee-cCCCCcccHHHHHH
Q 009189 129 SSYCCNICFDDVSLEEI-TT-MDCGHYFCNSCWTE 161 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~-~~-l~CgH~fC~~Cl~~ 161 (540)
+...|.+|...|....- .- -.||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 45679999988753221 12 27999999999764
No 235
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=31.04 E-value=23 Score=31.12 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=19.6
Q ss_pred CCCCC--CccceeecCCCCeeEe-ccCccccc
Q 009189 291 KHCPK--CQKLVEKNGGCNLVSC-ICGQPFCW 319 (540)
Q Consensus 291 k~CP~--C~~~IeK~~GCnhm~C-~C~~~FCw 319 (540)
+.||+ |+.-+.-..-=+..+| +|++-+++
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred CcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 78999 9885542211145789 79988775
No 236
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=30.68 E-value=15 Score=30.19 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=16.0
Q ss_pred CCCCeeEeccCccccccccccccCC
Q 009189 304 GGCNLVSCICGQPFCWLCGAATGSD 328 (540)
Q Consensus 304 ~GCnhm~C~C~~~FCw~C~~~~~~~ 328 (540)
++|.-+.-.|+|.|+..|...|-..
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKT 88 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTT
T ss_pred ccceEeecccCcEECHHHHHHHHHc
Confidence 3444455568888888888877443
No 237
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=30.40 E-value=3.7e+02 Score=25.69 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hcccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009189 452 EDQQQQFEANIEKLSSFLDE---KFHLYNEDEIKDLKLRVIALSATTDNLCRN 501 (540)
Q Consensus 452 e~~q~~le~~~e~L~~~le~---~~~~~~~~~~~~~r~~~~~l~~~~~~~~~~ 501 (540)
+.+++.++..++.|...|+. .+.......+..++..+..++.-++.....
T Consensus 168 ~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~ 220 (273)
T 3s84_A 168 EELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEE 220 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555555556666655551 111111112334555555555444444333
No 238
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide; transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Probab=30.29 E-value=1.2e+02 Score=25.71 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=16.3
Q ss_pred CCCCCceeeCHHHHHHHHHHHHHHHH
Q 009189 47 NSCPSSKVITKESLLAAQMEDLIRVM 72 (540)
Q Consensus 47 ~~~~~~~vlt~~~i~~~~~~~i~~v~ 72 (540)
........+|+-++...+-....+++
T Consensus 49 ~~r~t~p~lTRYElARIiG~RAlQLs 74 (127)
T 1qkl_A 49 QKRITTPYMTKYERARVLGTRALQIA 74 (127)
T ss_dssp CCSSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHHHHHHHHHHHHh
Confidence 33455666899888777665544443
No 239
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.99 E-value=73 Score=27.91 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=28.9
Q ss_pred ccCCCCCCccceeecCCCCeeEe-ccCccccccccccc
Q 009189 289 HTKHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGAAT 325 (540)
Q Consensus 289 ~~k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~ 325 (540)
+.+.|..|..++---.+. ...| .|++.+|-.|+...
T Consensus 67 ~~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~~~ 103 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSHAH 103 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEECC
T ss_pred CCccchhhcCccccccCC-CCcCCCCCchhhccccccc
Confidence 457899999998766666 4678 59999999999643
No 240
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=29.81 E-value=20 Score=28.78 Aligned_cols=47 Identities=23% Similarity=0.586 Sum_probs=33.4
Q ss_pred cccccccccccCCCCceeecCC-CCcccHHHHHHHHHHhhhcCCcccccccCcccccccchh
Q 009189 129 SSYCCNICFDDVSLEEITTMDC-GHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDES 189 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~ 189 (540)
..+.|-.|.-.. .. .+.| .|+.|..|+...+.. .=+||. |...++-.
T Consensus 27 G~~nCKsCWf~~--k~--LV~C~dHYLCl~CLtlmL~~--------SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFEN--KG--LVECNNHYLCLNCLTLLLSV--------SNRCPI--CKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCC--SS--EEECSSCEEEHHHHHHTCSS--------SSEETT--TTEECCCC
T ss_pred CcccChhhcccc--CC--eeeecchhhHHHHHHHHHhh--------ccCCcc--cCCcCCcc
Confidence 467899998664 22 3355 499999999876543 238998 98887643
No 241
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=29.59 E-value=19 Score=26.46 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=21.9
Q ss_pred hccCCCCCCccceeecCCCCeeEeccCccccccccccccCCCC
Q 009189 288 VHTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHT 330 (540)
Q Consensus 288 ~~~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~~H~ 330 (540)
...+.||+|++..- ...|-.||++....|+
T Consensus 4 s~mr~C~~CgvYTL-------------k~~CP~CG~~T~~~hP 33 (60)
T 2apo_B 4 MRMKKCPKCGLYTL-------------KEICPKCGEKTVIPKP 33 (60)
T ss_dssp CCCEECTTTCCEES-------------SSBCSSSCSBCBCCCC
T ss_pred hhceeCCCCCCEec-------------cccCcCCCCcCCCCCC
Confidence 34588999987664 3457888988777775
No 242
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.30 E-value=18 Score=30.57 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=22.4
Q ss_pred CCccccccccccccCCCCce-ee-cCCCCcccHHHHHHHH
Q 009189 126 QVSSSYCCNICFDDVSLEEI-TT-MDCGHYFCNSCWTEHF 163 (540)
Q Consensus 126 ~~~~~~~C~IC~e~~~~~~~-~~-l~CgH~fC~~Cl~~y~ 163 (540)
|......|..|-..|..... .- -.||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 33455689999888743211 12 2799999999976543
No 243
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=29.24 E-value=79 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHH
Q 009189 65 MEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVL 97 (540)
Q Consensus 65 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~ 97 (540)
.++|.-|++..|+|...|...|...++|.-..+
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai 98 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAI 98 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHH
Confidence 367888999999999999999999999965443
No 244
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.18 E-value=3.1e+02 Score=24.44 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=35.4
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCChhHHHHHHHHHHHHHHHHHH
Q 009189 438 EMTKGEREMKQNLFEDQQQQFEANI---EKLSSFLDEKF--HLYNEDEIKDLKLRVIALSATTDN 497 (540)
Q Consensus 438 ~~~~~~~~~~~~lfe~~q~~le~~~---e~L~~~le~~~--~~~~~~~~~~~r~~~~~l~~~~~~ 497 (540)
++|+++....+.|++..+.+..... -.+...|...+ ..+++.+|..+-.++..|..-...
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5789888888888776665554332 22333333333 234556788888888777544333
No 245
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=29.15 E-value=75 Score=30.29 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 66 EDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 66 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
+.|.++.+ .|++...|+..|..++||++..++.++.
T Consensus 217 ~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 217 KKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34444443 4999999999999999999999998873
No 246
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=28.87 E-value=25 Score=28.40 Aligned_cols=16 Identities=19% Similarity=0.596 Sum_probs=13.5
Q ss_pred cccHHHHHHHHHHhhh
Q 009189 153 YFCNSCWTEHFIVKIN 168 (540)
Q Consensus 153 ~fC~~Cl~~y~~~~i~ 168 (540)
-||++||..|+...-.
T Consensus 42 GFCRNCLskWy~~aA~ 57 (105)
T 2o35_A 42 GFCRNCLSNWYREAAE 57 (105)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999987654
No 247
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=28.64 E-value=26 Score=28.31 Aligned_cols=16 Identities=19% Similarity=0.638 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHHhhh
Q 009189 153 YFCNSCWTEHFIVKIN 168 (540)
Q Consensus 153 ~fC~~Cl~~y~~~~i~ 168 (540)
-||++||..|+...-.
T Consensus 41 GFCRNCLskWy~~aA~ 56 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAAT 56 (104)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999987654
No 248
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.03 E-value=19 Score=30.97 Aligned_cols=30 Identities=23% Similarity=0.681 Sum_probs=0.0
Q ss_pred cccccccccccC-CCCceeec--CCCCcccHHH
Q 009189 129 SSYCCNICFDDV-SLEEITTM--DCGHYFCNSC 158 (540)
Q Consensus 129 ~~~~C~IC~e~~-~~~~~~~l--~CgH~fC~~C 158 (540)
..-.|.+|..++ ...+.-.. .|.|.+|..|
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCccccccCCCcccccCCCCCCCCCCccccccc
No 249
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=27.73 E-value=1.8e+02 Score=22.65 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=36.8
Q ss_pred eCHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 55 ITKESLLAAQMEDLIRVMDLLS--LKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 55 lt~~~i~~~~~~~i~~v~~~l~--i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
|+..+ ......-+..+.+++| ||.........++++|+++.++.+..
T Consensus 26 Ls~~d-~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 26 LSEID-QARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp CCHHH-HHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 55433 2334666889999996 88888888889999999999998884
No 250
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=27.48 E-value=26 Score=27.60 Aligned_cols=27 Identities=26% Similarity=0.759 Sum_probs=17.7
Q ss_pred CCCCCCccc------eeecCCCCeeEec-cCccc
Q 009189 291 KHCPKCQKL------VEKNGGCNLVSCI-CGQPF 317 (540)
Q Consensus 291 k~CP~C~~~------IeK~~GCnhm~C~-C~~~F 317 (540)
=.||.|+.. |.|..|=-++.|+ ||..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 468888764 2345566678884 77766
No 251
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=26.88 E-value=19 Score=26.40 Aligned_cols=29 Identities=34% Similarity=0.789 Sum_probs=20.5
Q ss_pred ccCCCCCCccceeecCCCCeeEeccCccccccccccccCCCC
Q 009189 289 HTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHT 330 (540)
Q Consensus 289 ~~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~~H~ 330 (540)
..+.||+|++..-+ ..|-.||++....|+
T Consensus 4 ~mr~C~~Cg~YTLk-------------~~CP~CG~~t~~ahP 32 (60)
T 2aus_D 4 RIRKCPKCGRYTLK-------------ETCPVCGEKTKVAHP 32 (60)
T ss_dssp CCEECTTTCCEESS-------------SBCTTTCSBCEESSC
T ss_pred cceECCCCCCEEcc-------------ccCcCCCCccCCCCC
Confidence 45789999876542 447778888766664
No 252
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.55 E-value=32 Score=25.12 Aligned_cols=34 Identities=18% Similarity=0.432 Sum_probs=22.7
Q ss_pred cccccccccCCCCceeec-CCCCcccHHHHHHHHHH
Q 009189 131 YCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIV 165 (540)
Q Consensus 131 ~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~ 165 (540)
..|-.|...++....+.. .|++.||.+| .-|+..
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe 50 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHD 50 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHh
Confidence 358888888753333444 6999999999 334444
No 253
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.50 E-value=26 Score=27.30 Aligned_cols=34 Identities=24% Similarity=0.552 Sum_probs=23.1
Q ss_pred ccccccccccccCCCCce-ee-cCCCCcccHHHHHH
Q 009189 128 SSSYCCNICFDDVSLEEI-TT-MDCGHYFCNSCWTE 161 (540)
Q Consensus 128 ~~~~~C~IC~e~~~~~~~-~~-l~CgH~fC~~Cl~~ 161 (540)
.+...|.+|...|....- .- -.||..||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345689999988743221 12 27999999999543
No 254
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.22 E-value=1.4e+02 Score=22.18 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=33.2
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 65 MEDLIRVMDLL-SLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 65 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+.+..+.++| +|........|...+.+++..++.+..
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45567788899 899999999999999999999998763
No 255
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.22 E-value=21 Score=34.45 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=23.4
Q ss_pred CCCCCCccceeecCCCCeeEe-ccCccccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSC-ICGQPFCWLCGAAT 325 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~ 325 (540)
-.||-|..++. +-++- .|||.||-.|...|
T Consensus 182 l~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~ 212 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISRKCNHVFDRDGIQNY 212 (267)
T ss_dssp SBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHH
T ss_pred eECcCccCccc-----CCeeeCCCCCcccHHHHHHH
Confidence 58999998775 33677 58888998888775
No 256
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=25.72 E-value=39 Score=21.75 Aligned_cols=16 Identities=25% Similarity=0.808 Sum_probs=12.4
Q ss_pred ecccccCccCCCCCch
Q 009189 252 FCFRCSYEAHSPCSCY 267 (540)
Q Consensus 252 fC~~C~~~~H~~~~C~ 267 (540)
.|++|++..|....|.
T Consensus 2 ~C~~Cg~~GH~~~~C~ 17 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCR 17 (37)
T ss_dssp CBSSSCCSSCCTTTSS
T ss_pred cccccCCCCcchhhCc
Confidence 5889998888876664
No 257
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.48 E-value=33 Score=32.17 Aligned_cols=32 Identities=28% Similarity=0.691 Sum_probs=23.0
Q ss_pred CCCCCCccceeecCCCCeeEec-cCcccccccccc
Q 009189 291 KHCPKCQKLVEKNGGCNLVSCI-CGQPFCWLCGAA 324 (540)
Q Consensus 291 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~ 324 (540)
..|+.|+.+.-- .--.-.|| ||.-||..|...
T Consensus 165 ~~C~~C~~~F~~--~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGV--MTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBT--TBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCc--cccccccCCCcCEeChhhcCC
Confidence 578889876541 11236786 999999999874
No 258
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=25.26 E-value=15 Score=40.78 Aligned_cols=8 Identities=25% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 009189 59 SLLAAQME 66 (540)
Q Consensus 59 ~i~~~~~~ 66 (540)
+|..++.+
T Consensus 720 ELk~mVne 727 (956)
T 4aco_A 720 QLKSMINE 727 (956)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 259
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.24 E-value=1.2e+02 Score=20.59 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHH
Q 009189 67 DLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLV 101 (540)
Q Consensus 67 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~ 101 (540)
.|.++.+ +|++...|+..|+..+ |++..++.++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 4556665 6999999999999997 9988888766
No 260
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=25.00 E-value=34 Score=29.10 Aligned_cols=29 Identities=24% Similarity=0.697 Sum_probs=19.2
Q ss_pred hccCCCCCCccceeecCCCCeeEec-cCccc
Q 009189 288 VHTKHCPKCQKLVEKNGGCNLVSCI-CGQPF 317 (540)
Q Consensus 288 ~~~k~CP~C~~~IeK~~GCnhm~C~-C~~~F 317 (540)
...-.||+|+...-=..|= .+.|. |+++|
T Consensus 25 ~~lP~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred ccCCCCCCCCCcceEecCC-eEECCcccccc
Confidence 3457899998755443443 37784 88876
No 261
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.85 E-value=38 Score=29.99 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=25.4
Q ss_pred cccccccccccCCCCceeec---CCCCcccHHHHHHHHHH
Q 009189 129 SSYCCNICFDDVSLEEITTM---DCGHYFCNSCWTEHFIV 165 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l---~CgH~fC~~Cl~~y~~~ 165 (540)
....|.||.+- .+++.. +|...||..|+...+..
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 46789999875 455554 38899999999987643
No 262
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.65 E-value=82 Score=24.75 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=22.3
Q ss_pred cccccccccccCCCCceeecCCCCcccHH
Q 009189 129 SSYCCNICFDDVSLEEITTMDCGHYFCNS 157 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~ 157 (540)
....|..|-..+....++...||..||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 45689999987654446777899999964
No 263
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=24.29 E-value=27 Score=26.42 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=21.6
Q ss_pred cccccccccCCCCce-eec-CCCCcccHHHHHH
Q 009189 131 YCCNICFDDVSLEEI-TTM-DCGHYFCNSCWTE 161 (540)
Q Consensus 131 ~~C~IC~e~~~~~~~-~~l-~CgH~fC~~Cl~~ 161 (540)
..|.+|...|....- .-. .||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999988753221 122 6999999999753
No 264
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=23.94 E-value=36 Score=26.89 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=22.8
Q ss_pred cccccccccccCCCCce-ee-cCCCCcccHHHHHH
Q 009189 129 SSYCCNICFDDVSLEEI-TT-MDCGHYFCNSCWTE 161 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~~~-~~-l~CgH~fC~~Cl~~ 161 (540)
....|.+|...|..... .- -.||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34579999988754321 12 27999999999754
No 265
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.70 E-value=5.7e+02 Score=25.67 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 009189 380 MKETMEDNI 388 (540)
Q Consensus 380 ~~~~~~~~~ 388 (540)
+.+.+.+++
T Consensus 93 ~~~~lk~~~ 101 (390)
T 1deq_A 93 IVELMRGDF 101 (390)
T ss_pred HHHHHHHHH
Confidence 333333333
No 266
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=23.39 E-value=1.2e+02 Score=25.31 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 67 DLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 67 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.|.++++ +|++...|+..|+..+||++...+.++.
T Consensus 81 ~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 81 IVAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4566666 6999999999999999999999988773
No 267
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=23.19 E-value=1.6e+02 Score=20.52 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=33.8
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 65 MEDLIRVMDLL-SLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 65 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+++..+.+.| +++..+++..|...+.|++..++.+.+
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46788899998 899999999999999999999887763
No 268
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.75 E-value=35 Score=25.30 Aligned_cols=25 Identities=20% Similarity=0.630 Sum_probs=11.9
Q ss_pred CCCCCccceeecCCCCeeEec-cCccc
Q 009189 292 HCPKCQKLVEKNGGCNLVSCI-CGQPF 317 (540)
Q Consensus 292 ~CP~C~~~IeK~~GCnhm~C~-C~~~F 317 (540)
.|..|+..++-..+ .-|.|+ ||+.+
T Consensus 23 ~C~~Cg~~~~l~~~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 23 LCADCGARNTIQAK-EVIRCRECGHRV 48 (63)
T ss_dssp BCSSSCCBCCCCSS-SCCCCSSSCCCC
T ss_pred ECCCCCCeeecCCC-CceECCCCCcEE
Confidence 55566555543322 335553 55443
No 269
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.44 E-value=1.4e+02 Score=19.26 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcccCChhHHHHHHHHHHHHH
Q 009189 463 EKLSSFLDEKFHLYNEDEIKDLKLRVIALS 492 (540)
Q Consensus 463 e~L~~~le~~~~~~~~~~~~~~r~~~~~l~ 492 (540)
|+|+.-|+.. +++|..+|.+-.+|.
T Consensus 10 ekLhk~ie~K-----deeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQK-----DNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHhhHHHH
Confidence 6777777754 456888887766664
No 270
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=21.84 E-value=70 Score=23.84 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=22.4
Q ss_pred ccCCCCCCCCCeEEeccCccceeecC-CCceeccc
Q 009189 222 KWCPSVPHCGNAIRIEVDELREVECA-CGLQFCFR 255 (540)
Q Consensus 222 ~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~ 255 (540)
..|| +|++.-.+=+.....|.|. |+...|.-
T Consensus 8 VKCp---~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 8 VKCP---DCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EECT---TTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred EECC---CCCCceEEEecCceEEEcccCCCEEeec
Confidence 3687 7998765545455668995 99998864
No 271
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.83 E-value=25 Score=30.98 Aligned_cols=31 Identities=23% Similarity=0.667 Sum_probs=22.1
Q ss_pred cccccccccccCCCC-c-eee-cCCCCcccHHHH
Q 009189 129 SSYCCNICFDDVSLE-E-ITT-MDCGHYFCNSCW 159 (540)
Q Consensus 129 ~~~~C~IC~e~~~~~-~-~~~-l~CgH~fC~~Cl 159 (540)
..-.|.+|..+|..- + ... ..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467899999986321 1 222 379999999996
No 272
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=21.52 E-value=55 Score=30.10 Aligned_cols=61 Identities=16% Similarity=0.367 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCHHHHHHHc---CCCcccCCCCCCcCCccccccccccccCCCCceeecCCCCcccHHHHH
Q 009189 94 EKVLAVLVEYGKERLFAKA---GLTIVETDDVSSSQVSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWT 160 (540)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~---gl~~~~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~ 160 (540)
+.+++.+.+.+.+.++.-. .+.++.. .+......|++|-+.+......... |-.+|..|..
T Consensus 138 ~~~~~~il~~~~eelf~v~~v~~~~~p~~-----~~~~~~~~C~~CGE~~~~~~~~~~~-g~~~C~~C~~ 201 (204)
T 2gvi_A 138 DPVLEWISSLEDEEIFEYREIDGFTFEPV-----KKNGAKVRCDVCGEYTYEADAKLLN-GKPVCKPDYY 201 (204)
T ss_dssp HHHHHHHHHSCHHHHEEEEEESSCCCCCC-----CCCCCEEECTTTCCEEEGGGCEEET-TEEECHHHHH
T ss_pred HHHHHHHHhCChhHeEEEEEeeccCCCCC-----CCCCCceECCCCCCchhhcceeeeC-CcEEChhhhc
Confidence 3444555555657777543 3333322 1223468899999998644443333 7889999975
No 273
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=21.30 E-value=1.7e+02 Score=21.12 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=31.0
Q ss_pred eeeCHHHHHHHHHH-----HHHHHHHHhCCCHHHHHHHHHH
Q 009189 53 KVITKESLLAAQME-----DLIRVMDLLSLKEQHARTLLIH 88 (540)
Q Consensus 53 ~vlt~~~i~~~~~~-----~i~~v~~~l~i~~~~a~~LL~~ 88 (540)
..+|+++|...++. +|+.+++.++|+.+....+|+.
T Consensus 8 ~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 8 HMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp CCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHH
Confidence 45899999999988 4899999999999998888764
No 274
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=21.17 E-value=1.1e+02 Score=26.34 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=32.4
Q ss_pred eeeCHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHc
Q 009189 53 KVITKESLLAAQMED-LIRVMDLLSLKEQHARTLLIHY 89 (540)
Q Consensus 53 ~vlt~~~i~~~~~~~-i~~v~~~l~i~~~~a~~LL~~~ 89 (540)
.-+++++|.+..-.+ |.+++.-+|+++..|...|-.+
T Consensus 62 ~pIs~~ql~~~lG~~~l~~lA~q~Gl~~~~~~~~LA~~ 99 (135)
T 1z67_A 62 QSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQ 99 (135)
T ss_dssp CCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHChHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 568999999999666 9999999999999999888654
No 275
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.43 E-value=1.6e+02 Score=21.03 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=25.8
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009189 70 RVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVE 102 (540)
Q Consensus 70 ~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 102 (540)
.+.+.==........+|+.++||++++++.+..
T Consensus 15 ~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 15 HLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp HHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 344433347888899999999999999998874
No 276
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.21 E-value=64 Score=30.12 Aligned_cols=33 Identities=21% Similarity=0.549 Sum_probs=23.2
Q ss_pred ccccccccccCCCCce-eec-CCCCcccHHHHHHH
Q 009189 130 SYCCNICFDDVSLEEI-TTM-DCGHYFCNSCWTEH 162 (540)
Q Consensus 130 ~~~C~IC~e~~~~~~~-~~l-~CgH~fC~~Cl~~y 162 (540)
...|.+|...|..... .-. .||+.||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4589999888753321 222 79999999997643
Done!