Query 009190
Match_columns 540
No_of_seqs 207 out of 1633
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 21:31:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0544 Tig FKBP-type peptidyl 100.0 4.2E-77 9.1E-82 633.3 49.5 416 90-536 1-427 (441)
2 PRK01490 tig trigger factor; P 100.0 4.1E-75 9E-80 626.0 50.7 418 90-538 1-426 (435)
3 TIGR00115 tig trigger factor. 100.0 4.3E-72 9.4E-77 598.1 49.7 400 102-530 1-408 (408)
4 PF05697 Trigger_N: Bacterial 100.0 1.4E-28 3.1E-33 226.4 16.4 135 90-235 1-139 (145)
5 PF05698 Trigger_C: Bacterial 99.9 2.3E-21 4.9E-26 180.8 11.1 158 372-531 1-162 (162)
6 PF00254 FKBP_C: FKBP-type pep 99.1 7.2E-10 1.6E-14 94.0 9.5 84 259-348 3-94 (94)
7 COG1047 SlpA FKBP-type peptidy 98.8 2.6E-08 5.6E-13 93.1 10.3 87 260-352 2-142 (174)
8 PRK15095 FKBP-type peptidyl-pr 98.8 2.3E-08 5E-13 93.1 9.5 86 260-351 4-144 (156)
9 PRK10737 FKBP-type peptidyl-pr 98.7 5.4E-08 1.2E-12 93.5 10.3 94 261-364 3-149 (196)
10 COG0545 FkpA FKBP-type peptidy 98.4 9.6E-07 2.1E-11 84.2 9.7 85 259-351 114-205 (205)
11 KOG0549 FKBP-type peptidyl-pro 98.4 1.4E-06 3E-11 81.5 9.8 90 258-353 82-178 (188)
12 PRK10902 FKBP-type peptidyl-pr 98.4 1.1E-06 2.4E-11 88.8 9.9 85 260-352 160-250 (269)
13 TIGR03516 ppisom_GldI peptidyl 98.4 1.2E-06 2.7E-11 83.2 9.6 86 260-351 85-176 (177)
14 KOG0544 FKBP-type peptidyl-pro 98.4 1.7E-06 3.6E-11 72.1 8.6 84 261-350 17-107 (108)
15 KOG0552 FKBP-type peptidyl-pro 98.2 4.6E-06 9.9E-11 81.4 8.7 87 260-351 134-226 (226)
16 PRK11570 peptidyl-prolyl cis-t 98.0 4E-05 8.6E-10 74.7 9.9 84 260-351 116-206 (206)
17 PRK10770 peptidyl-prolyl cis-t 95.9 0.066 1.4E-06 57.6 11.6 70 416-499 19-88 (413)
18 PRK00059 prsA peptidylprolyl i 95.3 0.45 9.8E-06 49.7 15.0 104 387-500 85-190 (336)
19 PRK00059 prsA peptidylprolyl i 94.6 0.82 1.8E-05 47.8 14.5 80 458-537 84-176 (336)
20 PF09312 SurA_N: SurA N-termin 93.3 2.8 6.1E-05 37.0 13.3 67 459-525 42-117 (118)
21 TIGR02933 nifM_nitrog nitrogen 92.3 3.2 6.8E-05 41.9 13.7 85 394-500 34-118 (256)
22 PRK03095 prsA peptidylprolyl i 92.2 1.2 2.6E-05 45.7 10.7 76 451-527 36-117 (287)
23 PRK12450 foldase protein PrsA; 91.9 1.2 2.5E-05 46.4 10.3 74 464-537 56-135 (309)
24 PRK04405 prsA peptidylprolyl i 91.6 4.2 9E-05 42.0 13.9 80 395-496 57-141 (298)
25 KOG0543 FKBP-type peptidyl-pro 91.1 24 0.00053 37.7 21.2 85 262-353 102-192 (397)
26 PRK01326 prsA foldase protein 90.8 2 4.3E-05 44.6 10.8 65 463-527 53-123 (310)
27 PRK01326 prsA foldase protein 90.6 5.1 0.00011 41.6 13.5 78 398-495 59-141 (310)
28 PRK04980 hypothetical protein; 90.4 1.3 2.8E-05 38.3 7.3 44 337-383 44-87 (102)
29 PRK12450 foldase protein PrsA; 90.1 5.4 0.00012 41.4 13.3 86 396-496 59-145 (309)
30 PRK02998 prsA peptidylprolyl i 90.0 1.8 3.9E-05 44.3 9.5 75 451-526 37-118 (283)
31 PRK10788 periplasmic folding c 89.3 5.3 0.00011 45.5 13.5 77 456-532 84-172 (623)
32 cd06552 ASCH_yqfb_like ASC-1 h 88.1 2.2 4.7E-05 36.3 7.2 42 340-383 42-83 (100)
33 PRK03095 prsA peptidylprolyl i 87.2 10 0.00022 39.0 12.8 91 372-494 36-130 (287)
34 PRK03002 prsA peptidylprolyl i 86.9 6 0.00013 40.5 10.9 75 451-526 39-120 (285)
35 TIGR02933 nifM_nitrog nitrogen 86.8 5.7 0.00012 40.0 10.5 65 466-532 30-98 (256)
36 PRK10770 peptidyl-prolyl cis-t 86.6 15 0.00033 39.4 14.4 91 392-498 53-148 (413)
37 PRK04405 prsA peptidylprolyl i 86.6 5.4 0.00012 41.2 10.4 69 464-537 54-131 (298)
38 PRK02998 prsA peptidylprolyl i 84.1 20 0.00043 36.7 13.2 92 372-493 37-131 (283)
39 PF13624 SurA_N_3: SurA N-term 83.1 3.5 7.6E-05 37.6 6.6 36 461-496 77-112 (154)
40 PRK03002 prsA peptidylprolyl i 82.9 22 0.00047 36.4 12.9 97 371-494 38-134 (285)
41 PRK10788 periplasmic folding c 82.1 32 0.00068 39.2 15.1 35 390-424 90-124 (623)
42 KOG0543 FKBP-type peptidyl-pro 80.8 2.5 5.4E-05 44.9 5.1 56 260-321 8-64 (397)
43 PF01272 GreA_GreB: Transcript 70.5 10 0.00022 30.8 5.1 32 307-351 45-76 (77)
44 TIGR01462 greA transcription e 69.8 32 0.0007 31.7 9.0 20 306-325 119-138 (151)
45 TIGR01461 greB transcription e 69.6 29 0.00062 32.4 8.5 32 307-351 122-153 (156)
46 cd06541 ASCH ASC-1 homology or 69.3 19 0.0004 31.1 6.8 49 338-386 42-91 (105)
47 PRK01885 greB transcription el 67.7 28 0.00061 32.5 8.1 32 307-351 124-155 (157)
48 COG2411 Uncharacterized conser 67.2 20 0.00044 33.9 6.8 58 312-383 32-89 (188)
49 PRK14720 transcript cleavage f 66.5 32 0.00069 40.9 9.9 36 307-355 870-905 (906)
50 PRK01490 tig trigger factor; P 66.2 74 0.0016 34.5 12.3 71 466-536 283-367 (435)
51 PF05698 Trigger_C: Bacterial 64.5 42 0.00091 30.5 8.7 71 466-536 23-110 (162)
52 PRK00226 greA transcription el 63.0 35 0.00075 31.7 7.8 32 307-351 125-156 (157)
53 PRK05753 nucleoside diphosphat 60.1 54 0.0012 29.8 8.3 35 306-352 93-127 (137)
54 PF09312 SurA_N: SurA N-termin 60.0 70 0.0015 28.0 8.8 59 394-460 49-109 (118)
55 TIGR00115 tig trigger factor. 57.2 1.5E+02 0.0033 31.7 12.7 71 466-536 273-357 (408)
56 cd06553 ASCH_Ef3133_like ASC-1 56.2 54 0.0012 29.5 7.5 51 337-388 55-105 (127)
57 PRK05892 nucleoside diphosphat 54.0 60 0.0013 30.3 7.7 33 307-352 124-156 (158)
58 PF13623 SurA_N_2: SurA N-term 53.7 78 0.0017 29.1 8.3 36 458-493 80-115 (145)
59 PRK06342 transcription elongat 53.7 79 0.0017 29.6 8.4 17 307-323 133-149 (160)
60 COG2511 GatE Archaeal Glu-tRNA 47.2 2.9E+02 0.0063 31.0 12.4 137 357-499 439-584 (631)
61 TIGR02925 cis_trans_EpsD pepti 46.3 1.7E+02 0.0036 28.6 10.0 38 462-500 96-133 (232)
62 COG0544 Tig FKBP-type peptidyl 44.8 3.3E+02 0.0071 29.9 12.7 74 462-535 279-366 (441)
63 PF06857 ACP: Malonate decarbo 38.1 1.2E+02 0.0026 25.5 6.3 53 82-134 8-61 (87)
64 PRK12907 secY preprotein trans 37.5 23 0.0005 38.6 2.5 37 106-148 330-366 (434)
65 PRK06330 transcript cleavage f 33.4 2.7E+02 0.0058 32.4 10.0 19 306-324 685-703 (718)
66 PF11867 DUF3387: Domain of un 32.7 5.9E+02 0.013 26.5 15.2 89 355-443 153-248 (335)
67 COG0201 SecY Preprotein transl 30.8 35 0.00077 37.2 2.5 22 127-148 348-369 (436)
68 TIGR02920 acc_sec_Y2 accessory 30.1 45 0.00097 35.9 3.2 37 107-149 296-332 (395)
69 TIGR00967 3a0501s007 preprotei 26.4 49 0.0011 35.8 2.7 38 106-149 314-351 (410)
70 PF00344 SecY: SecY translocas 24.8 49 0.0011 34.9 2.3 27 123-149 273-300 (346)
71 CHL00161 secY preprotein trans 24.8 50 0.0011 35.8 2.4 37 106-148 316-352 (417)
72 TIGR03595 Obg_CgtA_exten Obg f 24.5 72 0.0016 25.4 2.6 29 242-270 35-63 (69)
73 COG4086 Predicted secreted pro 23.9 5E+02 0.011 26.7 8.9 107 309-425 122-243 (299)
74 PF13624 SurA_N_3: SurA N-term 23.6 5E+02 0.011 23.2 8.6 34 391-424 79-112 (154)
75 PF09269 DUF1967: Domain of un 23.3 62 0.0013 25.8 2.0 28 242-269 35-62 (69)
76 COG0782 Uncharacterized conser 21.5 1.3E+02 0.0029 27.7 4.2 32 307-351 118-149 (151)
77 PF10884 DUF2683: Protein of u 21.0 71 0.0015 26.3 1.9 25 356-380 46-78 (80)
78 PRK09204 secY preprotein trans 20.7 67 0.0014 35.0 2.3 36 107-148 329-364 (426)
No 1
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-77 Score=633.33 Aligned_cols=416 Identities=26% Similarity=0.440 Sum_probs=374.0
Q ss_pred ceEEEeecCCceeEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 009190 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (540)
Q Consensus 90 m~vt~~~~~~~~~~l~v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G~~~i~~e~~e~li~~~~~~ai 169 (540)
|+|++++++++.++++|+||++.++.++++++++++|+++||||||||||++||+++|| .+|++++++++++++|.+++
T Consensus 1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~IpGFRkGKvP~~ii~~ryg-~~v~~d~~~~ll~~~~~~a~ 79 (441)
T COG0544 1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVKIPGFRKGKVPRKVIEQRYG-EAVRQDVLNELLPEAFEEAI 79 (441)
T ss_pred CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCcCCCCCCCCCCHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999 58999999999999999999
Q ss_pred HhhhcccCCcccccccccchhhhccCCCCceEEEEEEEeecccccCCCCCCceeEEEEe----cchhhHHHHHHHHHHHH
Q 009190 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRR 245 (540)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~~ev~Pevel~~~~~yk~i~v~~~----~dedid~~~~~e~~L~~ 245 (540)
.+.++.|+++|. + . ...++++++|+|++.|+|+|+|+++ ||++|+|+++ ++++|+ +.|+.
T Consensus 80 ~e~~~~~~~~p~-~----~--~~~~e~~~~~~f~~~~ev~Pev~l~---d~~~i~v~~~~~ev~d~dvd------~~L~~ 143 (441)
T COG0544 80 KEEGLKPAGQPE-I----E--ITEFEKGEDFEFTAEVEVYPEVELG---DYKGIEVEKPVVEVTDEDVD------EELEK 143 (441)
T ss_pred HHhCcCcCCCCC-c----c--cccccCCCceEEEEEEEEeeceecC---ccccceeecCCcccCHHHHH------HHHHH
Confidence 999999998762 1 1 1357788899999999999999996 9999999987 244554 47888
Q ss_pred HHhhcCcccccccCCcccccEEEEEEEEEeeccCCCCCcccCCCCcCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEe
Q 009190 246 RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL 325 (540)
Q Consensus 246 ~~~~~~~~~~v~dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v 325 (540)
+++++++|.++.++ ++.||+|+|||.|+ .||++|+|++++||.|.+| +++|||||+++|+|||+||+++|++
T Consensus 144 l~~~~a~~~~~e~~-a~~gD~v~IDf~g~------iDg~~fegg~ae~~~l~lG-s~~fipgFe~~LvG~k~Ge~k~i~v 215 (441)
T COG0544 144 LRKRFATLEPVEGA-AENGDRVTIDFEGS------VDGEEFEGGKAENFSLELG-SGRFIPGFEDQLVGMKAGEEKDIKV 215 (441)
T ss_pred HHHhcCcccccccc-cccCCEEEEEEEEE------EcCeeccCccccCeEEEEc-CCCchhhHHhhhccCcCCCeeEEEE
Confidence 99999999886545 99999999999998 7899999999999999999 5799999999999999999999999
Q ss_pred cCCCCcccccCCCceeEEEEEEEEeeecCCCCCChHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009190 326 AFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLY 405 (540)
Q Consensus 326 ~fPedy~~~~laGk~v~F~VtVk~Ik~~~lPELdDEfak~l~~~~~tleelk~~Ire~l~~~~~~~~~~~~~~~il~~L~ 405 (540)
+||++||.++|+||.++|+|||++|+++++||||||||++++... |+++||+.+|++|+.+++....+..+++++++|.
T Consensus 216 tFP~dy~a~~LaGK~a~F~V~vkeVk~~elpEldDEfAk~~~~~~-tL~~Lk~~~r~~le~~~~~~~~~~~~~~~~~~L~ 294 (441)
T COG0544 216 TFPEDYHAEELAGKEATFKVKVKEVKKRELPELDDEFAKKLGEED-TLEELKEKLRKNLERELKEATLEKRKEQLLDALV 294 (441)
T ss_pred EcccccchhHhCCCceEEEEEEEEEeecCCCCCCHHHHHhcCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996444 9999999999999999999999999999999999
Q ss_pred HhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009190 406 KMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFS 485 (540)
Q Consensus 406 e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~Vs 485 (540)
+.+.|++|++||++++++++++...++ +++|++. + .. ++.+.+++++++++.|+++||.+|+|++||+.++|+||
T Consensus 295 e~~~~dlP~sli~~E~~~l~~~~~~~l-~~~~~~~--~-~~-~~~~~~~~~e~~~~~A~krVk~~Lil~~ia~~~~i~v~ 369 (441)
T COG0544 295 EANDFDLPESLVEAEIDNLLKQALQQL-QQQGIDS--L-EA-SGESEEELREEFKEEAEKRVKLGLLLEEIAKEEKLEVT 369 (441)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHH-Hhcccch--h-hh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 999999999999999999999999999 4678775 1 12 23467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-----hhh-hccHHHHHHHHHHHHHHHHHHHHHHHh-Ceee
Q 009190 486 TEDLVKEVENSIAELKQ-----QKQ-EYDEDRVREQVIDILEGAKVLEWLREH-AEIQ 536 (540)
Q Consensus 486 eeEi~~ei~~~~~~~~~-----~~~-~~~~~~~~~~i~~~l~~~Kvld~L~e~-aki~ 536 (540)
+++|++++..++++|.. ... .+........++..++.+|++++++.+ ++++
T Consensus 370 ~eei~~~i~~~a~~y~~~~~~e~~~~~~~~~~~~~~~k~~~~~~k~v~~~~~~~~~~~ 427 (441)
T COG0544 370 EEEIKAEIEELARQYGGEQPEEVIKLYYNNQELLDALKADILEEKAVDLLLANKKKVT 427 (441)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999987632 111 123445566788899999999999994 4443
No 2
>PRK01490 tig trigger factor; Provisional
Probab=100.00 E-value=4.1e-75 Score=626.04 Aligned_cols=418 Identities=26% Similarity=0.414 Sum_probs=371.6
Q ss_pred ceEEEeecCCceeEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 009190 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (540)
Q Consensus 90 m~vt~~~~~~~~~~l~v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G~~~i~~e~~e~li~~~~~~ai 169 (540)
|+++++++++|++.++|+||+++|+.++++++++++++++||||||||||++||+++||+ .|+.++++.+++++|.+|+
T Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGkvP~~ii~k~~g~-~i~~e~~~~li~~~~~~~i 79 (435)
T PRK01490 1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVRIPGFRKGKVPRKIVEQRYGE-SVRQEALNDLLPEAYEEAI 79 (435)
T ss_pred CcceEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhCcCCCccCCCCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999998 5999999999999999999
Q ss_pred HhhhcccCCcccccccccchhhhccCCCCceEEEEEEEeecccccCCCCCCceeEEEEe----cchhhHHHHHHHHHHHH
Q 009190 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRR 245 (540)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~~ev~Pevel~~~~~yk~i~v~~~----~dedid~~~~~e~~L~~ 245 (540)
++.++.|+++|. + .. .++.++++|+|+++|+++|+|+|+ +|++++|+++ ++++|+. .|.+
T Consensus 80 ~~~~~~~~~~p~-i----~~--~~~~~~~~~~~~~~~~v~Pev~l~---~y~~i~v~~~~~~vtde~vd~------~i~~ 143 (435)
T PRK01490 80 KEEGIRPAGQPE-I----EP--TEEEKGKDLEFTAEVEVYPEVELG---DYKGLEVEKPVVEVTDEDVDE------ELER 143 (435)
T ss_pred HHcCCCcCCCCc-c----cc--cccCCCCcEEEEEEeeecCCcccC---CCCceEEEeccCCCCHHHHHH------HHHH
Confidence 999999998652 2 11 346678999999999999999996 8999999986 3455654 6888
Q ss_pred HHhhcCcccccccCCcccccEEEEEEEEEeeccCCCCCcccCCCCcCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEe
Q 009190 246 RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL 325 (540)
Q Consensus 246 ~~~~~~~~~~v~dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v 325 (540)
+++++++|.++ +++++.||+|+|||+++ .+|++++++..+++.+.+|. +.++|||+++|+||++||+++|++
T Consensus 144 l~~~~a~~~~~-~~~~~~gD~V~vd~~~~------~~g~~~~~~~~~~~~~~lg~-~~~~~~fee~L~G~k~Ge~~~~~~ 215 (435)
T PRK01490 144 LRKQFATLVPV-ERPAENGDRVTIDFVGS------IDGEEFEGGKAEDFSLELGS-GRFIPGFEEQLVGMKAGEEKTIDV 215 (435)
T ss_pred HHHhCCccccc-cccCCCCCEEEEEEEEE------ECCEECcCCCCCceEEEEcC-CCcchhHHHHhCCCCCCCeeEEEe
Confidence 89999999875 58999999999999998 57899999999999999995 679999999999999999999999
Q ss_pred cCCCCcccccCCCceeEEEEEEEEeeecCCCCCChHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009190 326 AFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLY 405 (540)
Q Consensus 326 ~fPedy~~~~laGk~v~F~VtVk~Ik~~~lPELdDEfak~l~~~~~tleelk~~Ire~l~~~~~~~~~~~~~~~il~~L~ 405 (540)
+||++|+.++++|++++|+|+|++|+++.+|+||||||++++ .++|+++||+.||++|+.+.+..+++.++++|+++|+
T Consensus 216 ~~p~~~~~~~lagk~~~f~v~v~~V~~~~~pel~Defak~~~-~~~tleelk~~ik~~l~~~~~~~~~~~~~~~i~~~L~ 294 (435)
T PRK01490 216 TFPEDYHAEDLAGKEATFKVTVKEVKEKELPELDDEFAKKLG-EFETLEELKADIRKNLEREKKEAQRAKVKEAVLDALV 294 (435)
T ss_pred cCccccccccCCCCeEEEEEEEEEeccCCCCCCCHHHHHhcC-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985 3499999999999999999999999999999999999
Q ss_pred HhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009190 406 KMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFS 485 (540)
Q Consensus 406 e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~Vs 485 (540)
+.++|++|++||+++++.+++++..++. .++ .+|.... ..+.++|.+++++.|++++|+.||+++||+++||+||
T Consensus 295 ~~~~~~lPe~lv~~e~~~~~~~~~~~~~-~~~---~~~~~~~-~~~~e~~~~~~~~~A~~~vk~~lil~~Ia~~e~i~vs 369 (435)
T PRK01490 295 ENAEIDLPEALVEQEIDRLLRQALQQGL-DLE---GQFLEDT-GTTEEEPREEFREQAERRVKLGLLLDEIAKAEEIEVS 369 (435)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHhh-hhh---hhhhhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999987764432 111 3343322 2356889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH----HhhhhccHHHHHHHHHHHHHHHHHHHHHHHhCeeeee
Q 009190 486 TEDLVKEVENSIAELK----QQKQEYDEDRVREQVIDILEGAKVLEWLREHAEIQYI 538 (540)
Q Consensus 486 eeEi~~ei~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~~Kvld~L~e~aki~e~ 538 (540)
++|+++++++++.+|+ .+...+...+.++.++..++++||++||+++|++++.
T Consensus 370 ~eei~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Kv~~~l~~~a~v~~~ 426 (435)
T PRK01490 370 DEEVKAEIEEMASQYGQPPEVIEFYLKNPQLLAALRADVLEEKVVDFLLEKAKVTDK 426 (435)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhCEeccC
Confidence 9999999999987653 2222333344567889999999999999999999854
No 3
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=100.00 E-value=4.3e-72 Score=598.07 Aligned_cols=400 Identities=26% Similarity=0.448 Sum_probs=361.6
Q ss_pred eEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHHHhhhcccCCccc
Q 009190 102 VRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSV 181 (540)
Q Consensus 102 ~~l~v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G~~~i~~e~~e~li~~~~~~ai~e~~~~~l~~~~ 181 (540)
+.|+|+||+++|++++++++++++++++||||||||||++||+++||+ +|+.++++.+++++|.+++++.++.|++.|.
T Consensus 1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~~ipGFRkGKvP~~~i~k~~g~-~i~~e~~~~li~~~~~~~~~~~~~~~~~~p~ 79 (408)
T TIGR00115 1 RKLTVEVPAEEVEEEVDKALKELAKKVKIPGFRKGKVPRSVVEKRYGK-EVRQEALNELLQEAFSEAVKEEKIRPIGQPE 79 (408)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhCCCCCccCCCCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCc
Confidence 468999999999999999999999999999999999999999999998 5999999999999999999999999998753
Q ss_pred ccccccchhhhccCCCCceEEEEEEEeecccccCCCCCCceeEEEEe----cchhhHHHHHHHHHHHHHHhhcCcccccc
Q 009190 182 RIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRRRHKSLGSLKIVT 257 (540)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~~~f~v~~ev~Pevel~~~~~yk~i~v~~~----~dedid~~~~~e~~L~~~~~~~~~~~~v~ 257 (540)
+. ..++.++++|+|+++|+++|+|+|+ +|++++|+++ ++++|+. .|+++++++++|.++.
T Consensus 80 -~~------~~~~~~~~~~~~~~~~~v~Pev~l~---~y~~i~v~~~~~~vtde~vd~------~i~~l~~~~a~~~~~~ 143 (408)
T TIGR00115 80 -IE------VKEIEDGKDLEFTAEFEVYPEVELG---DYKGIEVEKPEVEVTDEDVDE------ELEKLREQNATLVPVE 143 (408)
T ss_pred -cc------cccccCCCCEEEEEEEEecCceecC---CCCceEEEeccCCCCHHHHHH------HHHHHHHhCCcccccc
Confidence 21 1356778999999999999999996 8999999986 2445554 6888999999998876
Q ss_pred cCCcccccEEEEEEEEEeeccCCCCCcccCCCCcCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcccccCC
Q 009190 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLR 337 (540)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~~la 337 (540)
+++++.||+|+|||+++ .+|++++++...++.+.+|. +.++|||+++|+||++||+++|+++||+||+.++++
T Consensus 144 ~~~~~~gD~V~v~~~~~------~dg~~~~~~~~~~~~~~lg~-~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~ 216 (408)
T TIGR00115 144 RRAAEKGDRVTIDFEGF------IDGEAFEGGKAENFSLELGS-GQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA 216 (408)
T ss_pred ccccCCCCEEEEEEEEE------ECCEECcCCCCCCeEEEECC-CCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC
Confidence 67999999999999998 57899999888999999995 689999999999999999999999999999999999
Q ss_pred CceeEEEEEEEEeeecCCCCCChHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCChhHH
Q 009190 338 GVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLF 417 (540)
Q Consensus 338 Gk~v~F~VtVk~Ik~~~lPELdDEfak~l~~~~~tleelk~~Ire~l~~~~~~~~~~~~~~~il~~L~e~~~~~lPe~lv 417 (540)
|+++.|+|+|++|+++.+|+||||||++++++++|+++||+.|+++|+.+.+..+++.++++|+++|++.++|++|++||
T Consensus 217 gk~~~f~v~i~~I~~~~~peldDefak~~~~~~~t~~elr~~ik~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~lPe~~v 296 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELDDEFAKELGEEFETLEELKADIRKNLEREKKERAKNKLKEQLLDKLVENNEFELPESLV 296 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999644899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009190 418 EEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSI 497 (540)
Q Consensus 418 ~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~ 497 (540)
+++++.+++++..++ +++|++.++|.+. +.++|.+++++.|++++||+||+++||+++||+||++|+++++++++
T Consensus 297 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~----~~e~~~~~~~~~a~~~~k~~lil~~ia~~e~I~vt~eei~~~~~~~a 371 (408)
T TIGR00115 297 EQEIDRLLEQALQQL-QQQGIDLEEYLKD----TEEELREEFREEAERRVKLGLILEEIAKKEKIEVSEEEVEAEIEELA 371 (408)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCHHHhhcc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999888 4689999988753 45789999999999999999999999999999999999999999988
Q ss_pred HHHH----HhhhhccHHHHHHHHHHHHHHHHHHHHHH
Q 009190 498 AELK----QQKQEYDEDRVREQVIDILEGAKVLEWLR 530 (540)
Q Consensus 498 ~~~~----~~~~~~~~~~~~~~i~~~l~~~Kvld~L~ 530 (540)
.+|. .+...|...+.++++++.++++||++||+
T Consensus 372 ~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~Kv~~~l~ 408 (408)
T TIGR00115 372 QQYGEDPEEVKKYYKKNELLEQLRNDLLEEKVVDFLL 408 (408)
T ss_pred HHcCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 7652 22223433345678899999999999984
No 4
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=99.96 E-value=1.4e-28 Score=226.39 Aligned_cols=135 Identities=32% Similarity=0.570 Sum_probs=115.2
Q ss_pred ceEEEeecCCceeEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 009190 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (540)
Q Consensus 90 m~vt~~~~~~~~~~l~v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G~~~i~~e~~e~li~~~~~~ai 169 (540)
|+|++++.++|.+.++|+|++++|+.++++++++++++++||||||||||+++|+++||.. |+.++++++++.+|.+|+
T Consensus 1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~ipGFRkGK~P~~vi~~~~g~~-i~~~~~~~~~~~~~~~~~ 79 (145)
T PF05697_consen 1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVKIPGFRKGKAPRNVIEKRYGKE-IREEAIEELLQEAYEEAI 79 (145)
T ss_dssp -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTTBTTS-TTSS-HHHHHHHHCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred HhhhcccCCcccccccccchhhhccCCCCceEEEEEEEeecccccCCCCCCceeEEEEe----cchhhHH
Q 009190 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAA 235 (540)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~~ev~Pevel~~~~~yk~i~v~~~----~dedid~ 235 (540)
++.+++|+++|. + . ...+.++++|+|++.|+++|+|+++ +|++++++++ ++++|+.
T Consensus 80 ~~~~~~~i~~p~-i----~--~~~~~~~~~~~~~~~~~~~Pev~l~---~~~~i~v~~~~~~vtd~~V~~ 139 (145)
T PF05697_consen 80 KEEKIKPIGDPE-I----E--EKDFKEGEDFEFEVEFEVFPEVELK---DYKGIKVEKPEVEVTDEDVDE 139 (145)
T ss_dssp HHTTS-ESSEEE-E----E--EEEEETTS-EEEEEEEEE--ECEET---TCTTSEEEEEEHHHHHHHHHH
T ss_pred HHcCCCcccccc-c----c--ccccccCCCEEEEEEEEecCCcccC---CCCCceeeecccCcCHHHHHH
Confidence 999999998652 2 1 1357789999999999999999996 8999999986 2455554
No 5
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This entry represents the C-terminal domain of bacterial trigger factor proteins, which has a multi-helical structure consisting of an irregular array of long and short helices. This domain is structurally similar to the peptide-binding domain of the bacterial porin chaperone SurA.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 1T11_A 3GU0_A 3GTY_X 2NSA_A 1ZXJ_A 1W26_A.
Probab=99.85 E-value=2.3e-21 Score=180.81 Aligned_cols=158 Identities=28% Similarity=0.420 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhH
Q 009190 372 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKA 451 (540)
Q Consensus 372 tleelk~~Ire~l~~~~~~~~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~ 451 (540)
|+++||+.|+++|..+.+....+.++++|+++|++.++|++|+++|++++++++.++..++ ..+|++.++|++..+. +
T Consensus 1 Tleelk~~i~~~l~~~~~~~~~~~~~~~v~~~L~~~~~~~lP~~lv~~~~~~~~~~~~~~~-~~~g~~~e~~~~~~~~-~ 78 (162)
T PF05698_consen 1 TLEELKEKIREELEKQKKQQIEQQKREAVLDALIENSEVELPESLVEEEIERLIEQMEQQL-KQQGMSLEQYLQMSGK-T 78 (162)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEEE-HHHHHHHHHHHHHHHHHTT----TSSCCCHHHHHCT-C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHhcCC-C
Confidence 7999999999999999999999999999999999999999999999999999999998888 5789999998766543 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----HhhhhccHHHHHHHHHHHHHHHHHHH
Q 009190 452 VKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELK----QQKQEYDEDRVREQVIDILEGAKVLE 527 (540)
Q Consensus 452 ~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~~Kvld 527 (540)
.++|.+.+++.|++.+|+.||+++||+.+||+||++|+++++..++..++ .....|..+..+..+++.++++||++
T Consensus 79 ~~~~~~~~~~~a~~~lk~~lil~~Ia~~e~I~v~~eev~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Kv~~ 158 (162)
T PF05698_consen 79 EEEFREEFREEAEKRLKQQLILDAIAKKEKIEVSDEEVEEEIEKLAQQYGMNPEELKEQYEKNKQLEQLRDDLLEDKVID 158 (162)
T ss_dssp CCSHCHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHCSTS-HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999887433 23334444444558999999999999
Q ss_pred HHHH
Q 009190 528 WLRE 531 (540)
Q Consensus 528 ~L~e 531 (540)
||+|
T Consensus 159 ~l~E 162 (162)
T PF05698_consen 159 FLLE 162 (162)
T ss_dssp HHC-
T ss_pred HHhC
Confidence 9975
No 6
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.07 E-value=7.2e-10 Score=94.04 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=73.4
Q ss_pred CCcccccEEEEEEEEEeeccCCCCCcccCCC--CcCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcccccC
Q 009190 259 RGLQVGDIAIVDISATTIDEDESNVQNIPDA--ETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL 336 (540)
Q Consensus 259 r~~~~GD~V~id~~~~~~d~d~~~G~~~~~~--~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~~l 336 (540)
+.++.||.|+|+|++.. .+|+.+++. ...++.|.+|. +.++|||+++|.||++||++.|.++++..|...+.
T Consensus 3 ~~~~~gd~V~i~y~~~~-----~~g~~~~~~~~~~~~~~~~~g~-~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~ 76 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRL-----EDGKVFDSSYQEGEPFEFRLGS-GQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGL 76 (94)
T ss_dssp SSBSTTSEEEEEEEEEE-----TTSEEEEETTTTTSEEEEETTS-SSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTB
T ss_pred ccCCCCCEEEEEEEEEE-----CCCcEEEEeeecCcceeeeecc-CccccchhhhcccccCCCEeeeEeCChhhcCcccc
Confidence 56899999999999983 478888887 56789999995 57999999999999999999999999999988776
Q ss_pred CC------ceeEEEEEEE
Q 009190 337 RG------VQAQFTVECR 348 (540)
Q Consensus 337 aG------k~v~F~VtVk 348 (540)
.+ +++.|+|++.
T Consensus 77 ~~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 77 EPPKIPPNSTLVFEIELL 94 (94)
T ss_dssp CTTTBTTTSEEEEEEEEE
T ss_pred CCCCcCCCCeEEEEEEEC
Confidence 44 8999999874
No 7
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.6e-08 Score=93.13 Aligned_cols=87 Identities=16% Similarity=0.318 Sum_probs=72.6
Q ss_pred CcccccEEEEEEEEEeeccCCCCCcccCCCC--cCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcc-----
Q 009190 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWR----- 332 (540)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~----- 332 (540)
.++.||+|.|+|+++. .+|+.++.+. ..++.+.+| .++++|||+++|+||.+|+++++.+..-+.|+
T Consensus 2 ~i~k~~~V~i~Y~~~~-----~dg~v~Dtt~e~~~P~~~i~G-~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~ 75 (174)
T COG1047 2 KIEKGDVVSLHYTLKV-----EDGEVVDTTDENYGPLTFIVG-AGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPD 75 (174)
T ss_pred cccCCCEEEEEEEEEe-----cCCcEEEcccccCCCeEEEec-CCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChH
Confidence 4789999999999983 4588887764 358899999 47899999999999999999999997333342
Q ss_pred -----------------------------------------------cccCCCceeEEEEEEEEeee
Q 009190 333 -----------------------------------------------QEHLRGVQAQFTVECRELFY 352 (540)
Q Consensus 333 -----------------------------------------------~~~laGk~v~F~VtVk~Ik~ 352 (540)
+..||||++.|+|+|.+|..
T Consensus 76 lvq~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~ 142 (174)
T COG1047 76 LVQRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVRE 142 (174)
T ss_pred HeEEecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEec
Confidence 56799999999999999974
No 8
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.80 E-value=2.3e-08 Score=93.15 Aligned_cols=86 Identities=19% Similarity=0.312 Sum_probs=71.7
Q ss_pred CcccccEEEEEEEEEeeccCCCCCcccCCCC--cCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcc-----
Q 009190 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWR----- 332 (540)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~----- 332 (540)
.++.||+|.++|+++. .+|+.|+++. ..++.|.+|. +.++|||+++|.||++|++++|.+..-+.|+
T Consensus 4 ~i~~~~~V~v~Y~~~~-----~dG~v~dst~~~~~P~~f~~G~-g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~~ 77 (156)
T PRK15095 4 SVQSNSAVLVHFTLKL-----DDGSTAESTRNNGKPALFRLGD-GSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSPD 77 (156)
T ss_pred ccCCCCEEEEEEEEEe-----CCCCEEEECCCCCCCEEEEeCC-CCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 4789999999999983 5688888764 3789999994 6899999999999999999999887222221
Q ss_pred ------------------------------------------------cccCCCceeEEEEEEEEee
Q 009190 333 ------------------------------------------------QEHLRGVQAQFTVECRELF 351 (540)
Q Consensus 333 ------------------------------------------------~~~laGk~v~F~VtVk~Ik 351 (540)
+..|||+++.|+|+|.+|+
T Consensus 78 ~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~i~~v~ 144 (156)
T PRK15095 78 LIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEID 144 (156)
T ss_pred HEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEec
Confidence 5679999999999999996
No 9
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.74 E-value=5.4e-08 Score=93.50 Aligned_cols=94 Identities=12% Similarity=0.230 Sum_probs=76.0
Q ss_pred cccccEEEEEEEEEeeccCCCCCcccCCCC-cCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcc-------
Q 009190 261 LQVGDIAIVDISATTIDEDESNVQNIPDAE-TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWR------- 332 (540)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~-~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~------- 332 (540)
++.|++|+|+|+.+. .+|+.++.+. ..++.|.+|. +.++|+|+++|+||++|++++|.+.-.+.|.
T Consensus 3 I~~~~vV~l~Y~l~~-----~dG~v~dst~~~~Pl~~~~G~-g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~lV 76 (196)
T PRK10737 3 VAKDLVVSLAYQVRT-----EDGVLVDESPVSAPLDYLHGH-GSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLV 76 (196)
T ss_pred cCCCCEEEEEEEEEe-----CCCCEEEecCCCCCeEEEeCC-CcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHHE
Confidence 678999999999983 4688888764 5789999994 7899999999999999999999987222221
Q ss_pred ---------------------------------------------cccCCCceeEEEEEEEEeeecCCCCCChHHHh
Q 009190 333 ---------------------------------------------QEHLRGVQAQFTVECRELFYRDLPKLDDSLAG 364 (540)
Q Consensus 333 ---------------------------------------------~~~laGk~v~F~VtVk~Ik~~~lPELdDEfak 364 (540)
+..|||+++.|+|+|.+|+ |.-.+|++.
T Consensus 77 ~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr----~at~eEi~~ 149 (196)
T PRK10737 77 QRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIR----EATEEELAH 149 (196)
T ss_pred EEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEec----cCCHHHHhc
Confidence 4579999999999999997 344566664
No 10
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.6e-07 Score=84.23 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=72.7
Q ss_pred CCcccccEEEEEEEEEeeccCCCCCcccCCC--CcCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcccccC
Q 009190 259 RGLQVGDIAIVDISATTIDEDESNVQNIPDA--ETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL 336 (540)
Q Consensus 259 r~~~~GD~V~id~~~~~~d~d~~~G~~~~~~--~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~~l 336 (540)
..+..||.|.++|+|+. .||+.|+++ ..+++.|.+| .+||||.++|.||++|+++.+.++-+-.|+....
T Consensus 114 ~~~~~~~~V~vhY~G~l-----~~G~vFDsS~~rg~p~~f~l~---~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~ 185 (205)
T COG0545 114 AAPKKGDTVTVHYTGTL-----IDGTVFDSSYDRGQPAEFPLG---GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV 185 (205)
T ss_pred CCCCCCCEEEEEEEEec-----CCCCccccccccCCCceeecC---CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC
Confidence 34677999999999985 689999986 4578888887 5999999999999999999999986678988776
Q ss_pred CC-----ceeEEEEEEEEee
Q 009190 337 RG-----VQAQFTVECRELF 351 (540)
Q Consensus 337 aG-----k~v~F~VtVk~Ik 351 (540)
.| -+..|.|++.+|+
T Consensus 186 ~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 186 PGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred CCCCCCCCeEEEEEEEEecC
Confidence 66 6789999998874
No 11
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.4e-06 Score=81.46 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=73.3
Q ss_pred cCCcccccEEEEEEEEEeeccCCCCCcccCCCC--cCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCccccc
Q 009190 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (540)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~~ 335 (540)
...++.||++.++|++.. .||..|+++- .++|+|.|| .+++|+|++.+|.||.+||++.+.++.--.|....
T Consensus 82 ~~kak~GD~l~~HY~g~l-----eDGt~fdSS~~rg~P~~f~LG-~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G 155 (188)
T KOG0549|consen 82 PEKAKKGDTLHVHYTGSL-----EDGTKFDSSYSRGAPFTFTLG-TGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERG 155 (188)
T ss_pred cccccCCCEEEEEEEEEe-----cCCCEEeeeccCCCCEEEEeC-CCceeccHhHHhhhhCcccceEEecCccccCccCC
Confidence 356899999999999974 6899998853 468999999 57999999999999999999999887444666544
Q ss_pred CCC-----ceeEEEEEEEEeeec
Q 009190 336 LRG-----VQAQFTVECRELFYR 353 (540)
Q Consensus 336 laG-----k~v~F~VtVk~Ik~~ 353 (540)
..+ ....|.|++.+|.+.
T Consensus 156 ~~~~IP~~A~LiFdiELv~i~~~ 178 (188)
T KOG0549|consen 156 APPKIPGDAVLIFDIELVKIERG 178 (188)
T ss_pred CCCCCCCCeeEEEEEEEEEeecC
Confidence 332 367999999999763
No 12
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.41 E-value=1.1e-06 Score=88.78 Aligned_cols=85 Identities=15% Similarity=0.302 Sum_probs=68.7
Q ss_pred CcccccEEEEEEEEEeeccCCCCCcccCCCC--cCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcccccCC
Q 009190 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLR 337 (540)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~~la 337 (540)
.++.||.|+|+|.++. .+|+.|++.. ..++.|.++ .++|||+++|.||++|++..|.++.+..|+.....
T Consensus 160 ~p~~gD~V~V~Y~g~l-----~dG~vfdss~~~g~p~~f~l~---~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~ 231 (269)
T PRK10902 160 APKDSDTVVVNYKGTL-----IDGKEFDNSYTRGEPLSFRLD---GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP 231 (269)
T ss_pred CCCCCCEEEEEEEEEe-----CCCCEeeccccCCCceEEecC---CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCCC
Confidence 3578999999999984 5788887753 345666654 59999999999999999999998877788877765
Q ss_pred Cc----eeEEEEEEEEeee
Q 009190 338 GV----QAQFTVECRELFY 352 (540)
Q Consensus 338 Gk----~v~F~VtVk~Ik~ 352 (540)
|. ++.|+|+|.+|+.
T Consensus 232 gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 232 GIPANSTLVFDVELLDVKP 250 (269)
T ss_pred CCCCCCcEEEEEEEEEecc
Confidence 54 4599999999974
No 13
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=98.41 E-value=1.2e-06 Score=83.24 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=69.9
Q ss_pred CcccccEEEEEEEEEeeccCCCCCcccCCCC-cCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcccccC--
Q 009190 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE-TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL-- 336 (540)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~-~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~~l-- 336 (540)
.++.||.|.++|.+.. .+|+.+++.. ..++.+.+|. +.++|||+++|.||++||+.+|.++....|+....
T Consensus 85 ~p~~gd~V~v~Y~~~~-----~dG~v~~ss~~~~P~~f~vg~-~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~ 158 (177)
T TIGR03516 85 TPEFGDLVTFEYDIRA-----LDGDVIYSEEELGPQTYKVDQ-QDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQN 158 (177)
T ss_pred cCCCCCEEEEEEEEEe-----CCCCEEEeCCCCCCEEEEeCC-cchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC
Confidence 3588999999999984 5688877654 3578888884 67999999999999999999999986667765443
Q ss_pred ---CCceeEEEEEEEEee
Q 009190 337 ---RGVQAQFTVECRELF 351 (540)
Q Consensus 337 ---aGk~v~F~VtVk~Ik 351 (540)
.+.+..|+|++.+|+
T Consensus 159 ~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 159 KIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CcCcCCcEEEEEEEEEec
Confidence 446789999999985
No 14
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.7e-06 Score=72.11 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=70.1
Q ss_pred cccccEEEEEEEEEeeccCCCCCcccCCCC--cCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcccccCCC
Q 009190 261 LQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRG 338 (540)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~~laG 338 (540)
.+.||.|+++|+++. .||+.|++.. .++|.|.+|. +.+|.||++++..|.+|+.-.+++.-+=.|......|
T Consensus 17 pK~Gqtvt~hYtg~L-----~dG~kfDSs~dr~kPfkf~IGk-geVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~ 90 (108)
T KOG0544|consen 17 PKKGQTVTVHYTGTL-----QDGKKFDSSRDRGKPFKFKIGK-GEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPG 90 (108)
T ss_pred CCCCCEEEEEEEeEe-----cCCcEeecccccCCCeeEEecC-cceeechhhcchhccccccceeeeccccccCCCCCCC
Confidence 689999999999984 6899999864 4789999995 6899999999999999999999887544565544433
Q ss_pred -----ceeEEEEEEEEe
Q 009190 339 -----VQAQFTVECREL 350 (540)
Q Consensus 339 -----k~v~F~VtVk~I 350 (540)
.+..|+|++.+|
T Consensus 91 ~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 91 GIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCcEEEEEEEEEec
Confidence 578999999876
No 15
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=4.6e-06 Score=81.38 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=73.3
Q ss_pred CcccccEEEEEEEEEeeccCCCCCcccCCC-CcCCeE-EEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcccccC-
Q 009190 260 GLQVGDIAIVDISATTIDEDESNVQNIPDA-ETKGFH-FDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL- 336 (540)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~-~~~~~~-l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~~l- 336 (540)
.+..|+.|.++|.|... .+|+.|+.. ..++|. |.+| .+.+|+||+-++.||++|.++.+.|+-|-.|+...+
T Consensus 134 ~a~~G~rV~v~Y~Gkl~----~~GkvFd~~~~~kp~~~f~lg-~g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~~ 208 (226)
T KOG0552|consen 134 SAKKGKRVSVRYIGKLK----GNGKVFDSNFGGKPFKLFRLG-SGEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGVP 208 (226)
T ss_pred CCCCCCEEEEEEEEEec----CCCeEeecccCCCCccccccC-CCCCCchHHHhhhhhccCCeeEEEeCccccccccCcC
Confidence 47789999999999852 278988874 457788 8999 468999999999999999999999998888987665
Q ss_pred ---CCceeEEEEEEEEee
Q 009190 337 ---RGVQAQFTVECRELF 351 (540)
Q Consensus 337 ---aGk~v~F~VtVk~Ik 351 (540)
.+.+.+|.|++..|+
T Consensus 209 ~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 209 EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred cCCCCCcEEEEEEEEecC
Confidence 447889999998873
No 16
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=97.97 E-value=4e-05 Score=74.72 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=66.6
Q ss_pred CcccccEEEEEEEEEeeccCCCCCcccCCCC--cCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcccccC-
Q 009190 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL- 336 (540)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~~l- 336 (540)
.+..||.|.|+|.++. .+|..|++.. ..++.|.++ .++|||+++|.||++|++..|.++.-..|+....
T Consensus 116 ~p~~~d~V~v~Y~g~l-----~dG~vfdss~~~g~P~~f~l~---~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~ 187 (206)
T PRK11570 116 IPARTDRVRVHYTGKL-----IDGTVFDSSVARGEPAEFPVN---GVIPGWIEALTLMPVGSKWELTIPHELAYGERGAG 187 (206)
T ss_pred CCCCCCEEEEEEEEEE-----CCCCEEEeccCCCCCeEEEee---chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCCC
Confidence 3578999999999984 5788888753 357788776 4899999999999999999999875456655432
Q ss_pred ----CCceeEEEEEEEEee
Q 009190 337 ----RGVQAQFTVECRELF 351 (540)
Q Consensus 337 ----aGk~v~F~VtVk~Ik 351 (540)
.+.++.|+|+|.+|+
T Consensus 188 ~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 188 ASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred CCcCCCCeEEEEEEEEEEC
Confidence 456889999999883
No 17
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=95.90 E-value=0.066 Score=57.63 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009190 416 LFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVEN 495 (540)
Q Consensus 416 lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~ 495 (540)
++..+++++++....+++ .+|.+.. . . +.++.++.++|....++..+|+++||+||+++|++++.+
T Consensus 19 I~~~ev~~~~~~~~~~~~-~~g~~~~------~---~----~~l~~~~l~~Li~~~Ll~q~A~~~gi~vsd~ev~~~i~~ 84 (413)
T PRK10770 19 VLESDVDGLMQSVKLNAQ-QAGQQLP------D---D----ATLRHQILERLIMDNIILQMAQKMGVKISDEQLDQAIAN 84 (413)
T ss_pred ccHHHHHHHHHHHHHHHH-HcCCCCC------c---H----HHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 345566666665555552 3443211 0 1 235678899999999999999999999999999999998
Q ss_pred HHHH
Q 009190 496 SIAE 499 (540)
Q Consensus 496 ~~~~ 499 (540)
++.+
T Consensus 85 ~~~~ 88 (413)
T PRK10770 85 IAAQ 88 (413)
T ss_pred HHHH
Confidence 7654
No 18
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=95.31 E-value=0.45 Score=49.70 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhc--CChhHHHHHHHHHHHHHH
Q 009190 387 VEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAAL--SSPKAVKEFLENQRENIT 464 (540)
Q Consensus 387 ~~~~~~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~--~~~~~~ee~~e~~~~~a~ 464 (540)
......++.+.+.++.+-.++..+.+++..|.++++..+..+.. +.+++.+.|.+. ..+-+.++|++ ..+
T Consensus 85 ~~~~vL~~LI~~~ll~q~a~~~gi~vsd~ei~~~i~~~~~~~~~----~~~~~~~~~~~~L~~~g~t~~~~~~----~~~ 156 (336)
T PRK00059 85 QKEQILDSLITEKVLLQKAKELKLIPSEEELNKEVDKKINEIKK----QFNNDEEQFEEALKATGFTEETFKE----YLK 156 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHH----hcCCCHHHHHHHHHHcCCCHHHHHH----HHH
Confidence 34455667778888888899999999999998888766554422 224555544321 11123344433 333
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 009190 465 NVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAEL 500 (540)
Q Consensus 465 ~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~ 500 (540)
+.+....+++.|.. ++.||++|+.++++.....|
T Consensus 157 ~~ll~~~l~~~i~~--~~~vsd~ei~~~y~~~~~~~ 190 (336)
T PRK00059 157 NQIIIEKVINEVVK--DVKVTDKDAQKYYNENKSKF 190 (336)
T ss_pred HHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhhhhh
Confidence 44555556666653 79999999999998876555
No 19
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=94.58 E-value=0.82 Score=47.77 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh-------------hhccHHHHHHHHHHHHHHHH
Q 009190 458 NQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQK-------------QEYDEDRVREQVIDILEGAK 524 (540)
Q Consensus 458 ~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~~~~-------------~~~~~~~~~~~i~~~l~~~K 524 (540)
..+.++..++-...++..-|++.||+||+++|.+++...+..|...+ ..++.+.+++.++..++.++
T Consensus 84 ~~~~~vL~~LI~~~ll~q~a~~~gi~vsd~ei~~~i~~~~~~~~~~~~~~~~~~~~~L~~~g~t~~~~~~~~~~~ll~~~ 163 (336)
T PRK00059 84 QQKEQILDSLITEKVLLQKAKELKLIPSEEELNKEVDKKINEIKKQFNNDEEQFEEALKATGFTEETFKEYLKNQIIIEK 163 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35677777888888888899999999999999888876544332110 11355677788888888899
Q ss_pred HHHHHHHhCeeee
Q 009190 525 VLEWLREHAEIQY 537 (540)
Q Consensus 525 vld~L~e~aki~e 537 (540)
+++.+...++|++
T Consensus 164 l~~~i~~~~~vsd 176 (336)
T PRK00059 164 VINEVVKDVKVTD 176 (336)
T ss_pred HHHHHhccCCCCH
Confidence 9998887766654
No 20
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=93.26 E-value=2.8 Score=36.98 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----Hhh-----hhccHHHHHHHHHHHHHHHHH
Q 009190 459 QRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELK----QQK-----QEYDEDRVREQVIDILEGAKV 525 (540)
Q Consensus 459 ~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~----~~~-----~~~~~~~~~~~i~~~l~~~Kv 525 (540)
++.++.+.+=..-++..-|+..||.||+++|++.+..++++.. ++. ...+.+.++++++..++..++
T Consensus 42 l~~qvLd~LI~e~L~~q~ak~~gI~vsd~evd~~i~~ia~~n~ls~~ql~~~L~~~G~s~~~~r~~ir~~i~~~~l 117 (118)
T PF09312_consen 42 LRKQVLDQLIDEKLQLQEAKRLGIKVSDEEVDEAIANIAKQNNLSVEQLRQQLEQQGISYEEYREQIRKQILIQRL 117 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHTT--HHHHHHHCHHCT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Confidence 3455666666666677889999999999999999999875421 111 112445677777777766554
No 21
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=92.27 E-value=3.2 Score=41.86 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009190 394 QATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAV 473 (540)
Q Consensus 394 ~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~Lil 473 (540)
+.+.+.++-+..+...+.+++.-|++..+ ++...| ...|++.+.| ++..++.+.+..++
T Consensus 34 ~lI~e~l~lq~A~~~gi~v~~~ev~~~~e----~~~~~L-~~~G~~~~~~----------------r~~ir~~i~~~~~~ 92 (256)
T TIGR02933 34 QRHIEQAVVRAADEIGVVIPPSLLEEAPQ----ALAQAL-DEQALDAAER----------------RAMLAHHLRLEAQL 92 (256)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHHHH-HHcCCCHHHH----------------HHHHHHHHHHHHHH
Confidence 56778888888899999999999987643 344455 4568875432 34444555566666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 009190 474 GDIFKRENLQFSTEDLVKEVENSIAEL 500 (540)
Q Consensus 474 ~~Ia~~enI~VseeEi~~ei~~~~~~~ 500 (540)
+.+.+. .+.||++||+.++......|
T Consensus 93 ~~~~~~-~i~ise~ei~~yy~~~~~~~ 118 (256)
T TIGR02933 93 ACVCAQ-APQPDDADVEAWYRRHAEQF 118 (256)
T ss_pred HHHhcC-CCCCCHHHHHHHHHHHHHhc
Confidence 665543 48999999999998766555
No 22
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=92.17 E-value=1.2 Score=45.73 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-hh-----hhccHHHHHHHHHHHHHHHH
Q 009190 451 AVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQ-QK-----QEYDEDRVREQVIDILEGAK 524 (540)
Q Consensus 451 ~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~~-~~-----~~~~~~~~~~~i~~~l~~~K 524 (540)
|.++|...++....+.+-.+||++++..+ +|.||+++|++++.++.+++.. +. +.++.+.++++++..++.++
T Consensus 36 T~~e~~~~~k~~~~~~~L~~~I~~~l~~~-~i~vs~~evd~~i~~i~~~~~~~f~~~L~~~g~s~~~~r~~lr~~l~~~k 114 (287)
T PRK03095 36 TKDEFYEQMKTQAGKQVLNNMVMEKVLIK-NYKVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEK 114 (287)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44566666666777788889999888754 8999999999999998876531 11 12456778888888888877
Q ss_pred HHH
Q 009190 525 VLE 527 (540)
Q Consensus 525 vld 527 (540)
+++
T Consensus 115 l~~ 117 (287)
T PRK03095 115 AIE 117 (287)
T ss_pred Hhc
Confidence 765
No 23
>PRK12450 foldase protein PrsA; Reviewed
Probab=91.89 E-value=1.2 Score=46.36 Aligned_cols=74 Identities=7% Similarity=-0.023 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-Hhh-----hhccHHHHHHHHHHHHHHHHHHHHHHHhCeeee
Q 009190 464 TNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELK-QQK-----QEYDEDRVREQVIDILEGAKVLEWLREHAEIQY 537 (540)
Q Consensus 464 ~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~-~~~-----~~~~~~~~~~~i~~~l~~~Kvld~L~e~aki~e 537 (540)
++.+...||-+.|..++++.|+++||++.+.+...++. .+. +.++.+.++++++..++.++++.-+...++|++
T Consensus 56 ~~~~l~~li~~~L~~q~~~kvsd~eVd~~i~~~~~q~g~~f~~~L~~~G~T~~~~ke~Ir~~ll~~~~~~~~~~~~~Vtd 135 (309)
T PRK12450 56 QKAMLSLVISRVFETQYANKVSDKEVEKAYKQTADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 56677788888888999999999999999998877653 111 124566678888877777777766666666654
No 24
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=91.56 E-value=4.2 Score=42.03 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHH-hcCcCCChhHHHHHHHHHHHHHHH----HHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q 009190 395 ATDNAILDQLYK-MVEIDIPQSLFEEQGRQLYGAQLL----QMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQ 469 (540)
Q Consensus 395 ~~~~~il~~L~e-~~~~~lPe~lv~~e~~~~~~~~~~----~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~ 469 (540)
.+.+.|.+.++. ...+.+++.-|+++++++..++-. .| .++|++.+ .|+ +++|.
T Consensus 57 ~L~~li~~k~l~~~~~~~v~~~evd~~i~~i~~~~g~~f~~~L-~~~G~t~~------------~~r--------~~ir~ 115 (298)
T PRK04405 57 VLANMIIYRALEKQYGKKVSTKKVDKQYNSYKKQYGSSFDSVL-SQNGMTTS------------SFK--------QNLRT 115 (298)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHH-HHcCCCHH------------HHH--------HHHHH
Confidence 444555554443 456678888888777665543211 12 23444432 232 33555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009190 470 NLAVGDIFKRENLQFSTEDLVKEVENS 496 (540)
Q Consensus 470 ~Lil~~Ia~~enI~VseeEi~~ei~~~ 496 (540)
.++++.+.. ..+.||++||+++++..
T Consensus 116 ~~l~~~~v~-~~i~Vtd~ei~~~y~~~ 141 (298)
T PRK04405 116 NLLSEAALK-KLKKVTNSQLKKAWKSY 141 (298)
T ss_pred HHHHHHHHh-ccCCCCHHHHHHHHHHh
Confidence 666665544 46999999999988753
No 25
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=24 Score=37.69 Aligned_cols=85 Identities=13% Similarity=0.197 Sum_probs=61.4
Q ss_pred ccccEEEEEEEEEeeccCCCCCcccCCCCcCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEecCCCCcccc--c----
Q 009190 262 QVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQE--H---- 335 (540)
Q Consensus 262 ~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v~fPedy~~~--~---- 335 (540)
-.|-+|.++|.|.. .+| .|.. ..-+|.|.+|.+..++.|++-+|-.|++||...|.+..-=.|+.. .
T Consensus 102 ~~g~~V~v~~~G~~-----~~~-~f~~-~~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~I 174 (397)
T KOG0543|consen 102 NKGAVVKVHLEGEL-----EDG-VFDQ-RELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLI 174 (397)
T ss_pred CCCcEEEEEEEEEE-----CCc-ceec-cccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCC
Confidence 45788999999983 233 5554 334589988865568889999999999999999988732233311 0
Q ss_pred CCCceeEEEEEEEEeeec
Q 009190 336 LRGVQAQFTVECRELFYR 353 (540)
Q Consensus 336 laGk~v~F~VtVk~Ik~~ 353 (540)
=-+-++.|+|++++...+
T Consensus 175 PPnA~l~yEVeL~~f~~~ 192 (397)
T KOG0543|consen 175 PPNATLLYEVELLDFELK 192 (397)
T ss_pred CCCceEEEEEEEEeeecC
Confidence 123579999999999743
No 26
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=90.83 E-value=2 Score=44.61 Aligned_cols=65 Identities=6% Similarity=-0.026 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-Hhhh-----hccHHHHHHHHHHHHHHHHHHH
Q 009190 463 ITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELK-QQKQ-----EYDEDRVREQVIDILEGAKVLE 527 (540)
Q Consensus 463 a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~-~~~~-----~~~~~~~~~~i~~~l~~~Kvld 527 (540)
..+.+...++...+.++.+|.|+++||++++.++.+++. .+.. .++.+.++++++..++.+++++
T Consensus 53 ~~~~l~~~~i~~~l~~q~~i~Vsd~EVd~~i~~i~~q~g~~f~~~L~~~G~t~~~~k~~ir~~ll~~~~~~ 123 (310)
T PRK01326 53 AQQAMLNLTISRVFEKQYGDKVSDKEVEKAYAKTAKQYGASFSRALAQAGLTPETYKAQIRTSKLVEYAVK 123 (310)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 345666677777788999999999999999999887653 1111 1455667777777666666554
No 27
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=90.57 E-value=5.1 Score=41.60 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=41.6
Q ss_pred HHHHHH-HHHhcCcCCChhHHHHHHHHHHHHHH----HHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009190 398 NAILDQ-LYKMVEIDIPQSLFEEQGRQLYGAQL----LQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLA 472 (540)
Q Consensus 398 ~~il~~-L~e~~~~~lPe~lv~~e~~~~~~~~~----~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~Li 472 (540)
+.++.. |.+...+.+.+.-|+.+++.+..++. ..+ ..+|++. +.|++.+ +..+.+..+
T Consensus 59 ~~~i~~~l~~q~~i~Vsd~EVd~~i~~i~~q~g~~f~~~L-~~~G~t~------------~~~k~~i----r~~ll~~~~ 121 (310)
T PRK01326 59 NLTISRVFEKQYGDKVSDKEVEKAYAKTAKQYGASFSRAL-AQAGLTP------------ETYKAQI----RTSKLVEYA 121 (310)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhHHHHHHH-HHcCCCH------------HHHHHHH----HHHHHHHHH
Confidence 334444 44566778888888887776654322 122 2334433 3333222 223333333
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH
Q 009190 473 VGDIFKRENLQFSTEDLVKEVEN 495 (540)
Q Consensus 473 l~~Ia~~enI~VseeEi~~ei~~ 495 (540)
+... -++.||++|++++++.
T Consensus 122 ~~~~---~~~~Vtd~ei~~~y~~ 141 (310)
T PRK01326 122 VKEA---AKKELTDEAYKKAYEE 141 (310)
T ss_pred HHHh---hcCCCCHHHHHHHHHH
Confidence 3332 3368999999887765
No 28
>PRK04980 hypothetical protein; Provisional
Probab=90.38 E-value=1.3 Score=38.29 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=38.1
Q ss_pred CCceeEEEEEEEEeeecCCCCCChHHHhhhCCCCCCHHHHHHHHHHH
Q 009190 337 RGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQK 383 (540)
Q Consensus 337 aGk~v~F~VtVk~Ik~~~lPELdDEfak~l~~~~~tleelk~~Ire~ 383 (540)
.+-.....++|.+|....+-+|||+.|+.= |+ |+++||+.|++-
T Consensus 44 e~g~~~c~ieI~sV~~i~f~eLte~hA~qE--g~-sL~elk~~i~~i 87 (102)
T PRK04980 44 EDDRYFCTIEVLSVSPVTFDELNEKHAEQE--NM-TLPELKQVIAEI 87 (102)
T ss_pred CCCcEEEEEEEEEEEEEehhhCCHHHHHHh--CC-CHHHHHHHHHHH
Confidence 345677899999999999999999999975 56 899999999874
No 29
>PRK12450 foldase protein PrsA; Reviewed
Probab=90.14 E-value=5.4 Score=41.39 Aligned_cols=86 Identities=12% Similarity=0.081 Sum_probs=45.1
Q ss_pred HHHHHHHHHH-HhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009190 396 TDNAILDQLY-KMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVG 474 (540)
Q Consensus 396 ~~~~il~~L~-e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~Lil~ 474 (540)
+.+.++++++ ...-..++..-|+++++.+..++ |.+.+.++...+. +.+.|+ ++.+..+.+..++.
T Consensus 59 ~l~~li~~~L~~q~~~kvsd~eVd~~i~~~~~q~--------g~~f~~~L~~~G~-T~~~~k----e~Ir~~ll~~~~~~ 125 (309)
T PRK12450 59 MLSLVISRVFETQYANKVSDKEVEKAYKQTADQY--------GTSFKTVLAQSGL-TPETYK----KQIRLTKLVEYAVK 125 (309)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------hHHHHHHHHHcCC-CHHHHH----HHHHHHHHHHHHHH
Confidence 4455555444 55555788888887776654432 2222332222211 223332 22233344444444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHH
Q 009190 475 DIFKRENLQFSTEDLVKEVENS 496 (540)
Q Consensus 475 ~Ia~~enI~VseeEi~~ei~~~ 496 (540)
+++ ..+.||++|+.++++..
T Consensus 126 ~~~--~~~~Vtd~evk~~y~~~ 145 (309)
T PRK12450 126 EQA--KNETISKKDYRQAYDAY 145 (309)
T ss_pred HHh--ccCCCCHHHHHHHHHHh
Confidence 432 56789999999988764
No 30
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=89.97 E-value=1.8 Score=44.32 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-hhh-----hc-cHHHHHHHHHHHHHHH
Q 009190 451 AVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQ-QKQ-----EY-DEDRVREQVIDILEGA 523 (540)
Q Consensus 451 ~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~~-~~~-----~~-~~~~~~~~i~~~l~~~ 523 (540)
+.++|..+++...-..+-..||+.++.. .+|.||++||+++++++.+++.. +.. .+ +.+.++++++..++.+
T Consensus 37 t~~e~~~~~~~~~g~~~l~~li~~k~~~-~~i~vsd~ev~~~i~~~~~~~~~~f~~~L~~~G~~~~~~~r~~i~~~l~~~ 115 (283)
T PRK02998 37 TEKELSKELRQKYGESTLYQMVLSKALL-DKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAFE 115 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4566777777777777888888888876 47999999999999998766531 111 13 3456777777776666
Q ss_pred HHH
Q 009190 524 KVL 526 (540)
Q Consensus 524 Kvl 526 (540)
+++
T Consensus 116 ~~~ 118 (283)
T PRK02998 116 KAI 118 (283)
T ss_pred HHh
Confidence 554
No 31
>PRK10788 periplasmic folding chaperone; Provisional
Probab=89.27 E-value=5.3 Score=45.51 Aligned_cols=77 Identities=10% Similarity=0.147 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----------HHHHh--hhhccHHHHHHHHHHHHHHH
Q 009190 456 LENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIA----------ELKQQ--KQEYDEDRVREQVIDILEGA 523 (540)
Q Consensus 456 ~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~----------~~~~~--~~~~~~~~~~~~i~~~l~~~ 523 (540)
...++.++-+++-...++..-|++.||.||+++|...|..... .|..+ ...++.+.++++++..++.+
T Consensus 84 ~~~l~~qvl~~LI~~~Ll~q~A~~lgi~vsd~ev~~~I~~~p~Fq~~G~Fd~~~y~~~L~~~g~t~~~f~~~ir~~l~~~ 163 (623)
T PRK10788 84 MKQLRQQVLNRLIDEALLDQYARELGLGISDEQVKQAIFATPAFQTDGKFDNNKYLAILNQMGMTADQYAQALRQQLTTQ 163 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhCcccccCCCcCHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4456788888888888999999999999999999999977421 12211 01245667788888889989
Q ss_pred HHHHHHHHh
Q 009190 524 KVLEWLREH 532 (540)
Q Consensus 524 Kvld~L~e~ 532 (540)
+....|...
T Consensus 164 ~l~~~i~~~ 172 (623)
T PRK10788 164 QLINGVAGT 172 (623)
T ss_pred HHHHHHhhc
Confidence 988877643
No 32
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=88.07 E-value=2.2 Score=36.31 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=37.5
Q ss_pred eeEEEEEEEEeeecCCCCCChHHHhhhCCCCCCHHHHHHHHHHH
Q 009190 340 QAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQK 383 (540)
Q Consensus 340 ~v~F~VtVk~Ik~~~lPELdDEfak~l~~~~~tleelk~~Ire~ 383 (540)
+....++|.+|....+.+|++++|+.- |+.|+++|++.+++.
T Consensus 42 ~~~~~~~v~~V~~~~~~~l~~~~A~~e--G~~s~~~~~~~l~~~ 83 (100)
T cd06552 42 RIFGEAEITSVEEKTLGELTDEDARQE--GFPSLEELKEALKEI 83 (100)
T ss_pred EEEEEEEEEEEEEEEhhhCCHHHHHhc--CCccHHHHHHHHHHH
Confidence 788999999999999999999999886 788999999998853
No 33
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=87.23 E-value=10 Score=38.95 Aligned_cols=91 Identities=9% Similarity=0.162 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHHHHHHH----HHHHhcCCCCHHHHHhcC
Q 009190 372 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQL----LQMQAGMKLNEQQLAALS 447 (540)
Q Consensus 372 tleelk~~Ire~l~~~~~~~~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~~~~~----~~l~~~~~~~~e~~~~~~ 447 (540)
|.++|.+.++.... .+.+.+-|++.|+.. .+.+++.-|+++++++.+++- ..+ ..+|++.
T Consensus 36 T~~e~~~~~k~~~~-------~~~L~~~I~~~l~~~-~i~vs~~evd~~i~~i~~~~~~~f~~~L-~~~g~s~------- 99 (287)
T PRK03095 36 TKDEFYEQMKTQAG-------KQVLNNMVMEKVLIK-NYKVEDKEVDKKYDEMKKQYGDQFDTLL-KQQGIKE------- 99 (287)
T ss_pred cHHHHHHHHHHHHH-------HHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHhhHHHHHHH-HHcCCCH-------
Confidence 77888777766443 234555556666544 578888888887776654321 112 2334433
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 009190 448 SPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVE 494 (540)
Q Consensus 448 ~~~~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~ 494 (540)
++|+ ..++..|+.+++.. ..||++|+++++.
T Consensus 100 -----~~~r--------~~lr~~l~~~kl~~---~~vtd~ei~~~y~ 130 (287)
T PRK03095 100 -----ETLK--------TGVRAQLAQEKAIE---KTITDKELKDNYK 130 (287)
T ss_pred -----HHHH--------HHHHHHHHHHHHhc---ccCCHHHHHhhhc
Confidence 2232 33444555555554 3789999987653
No 34
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=86.89 E-value=6 Score=40.52 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-hhh-----hc-cHHHHHHHHHHHHHHH
Q 009190 451 AVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQ-QKQ-----EY-DEDRVREQVIDILEGA 523 (540)
Q Consensus 451 ~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~~-~~~-----~~-~~~~~~~~i~~~l~~~ 523 (540)
+..+|..+++.+....+-..||..++.+ .+|.||+++|++++.+++.+|.. +.. .+ +.+.++++++..++.+
T Consensus 39 t~~~~~~~l~~~~g~~~l~~li~~~~~~-~~i~vsd~evd~~i~~i~~~~g~~f~~~L~~~G~~~~~~~r~~ir~~l~~~ 117 (285)
T PRK03002 39 TKSDFEKQLKDRYGKDMLYEMMAQDVIT-KKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLAMN 117 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3455666666666667788888888876 57999999999999998876531 111 13 3566777777766555
Q ss_pred HHH
Q 009190 524 KVL 526 (540)
Q Consensus 524 Kvl 526 (540)
+++
T Consensus 118 ~~~ 120 (285)
T PRK03002 118 EAI 120 (285)
T ss_pred HHH
Confidence 443
No 35
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=86.81 E-value=5.7 Score=40.02 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=47.3
Q ss_pred HHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHh
Q 009190 466 VIKQNLAV----GDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDRVREQVIDILEGAKVLEWLREH 532 (540)
Q Consensus 466 ~vK~~Lil----~~Ia~~enI~VseeEi~~ei~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Kvld~L~e~ 532 (540)
++...||+ -..|++.||.|++++|++..+.+...+.+.|. +.+.++++++..++.+++++.+...
T Consensus 30 ~~~~~lI~e~l~lq~A~~~gi~v~~~ev~~~~e~~~~~L~~~G~--~~~~~r~~ir~~i~~~~~~~~~~~~ 98 (256)
T TIGR02933 30 AWQRQRHIEQAVVRAADEIGVVIPPSLLEEAPQALAQALDEQAL--DAAERRAMLAHHLRLEAQLACVCAQ 98 (256)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33345554 55688899999999999887766655555554 5567888888888888888776643
No 36
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=86.58 E-value=15 Score=39.38 Aligned_cols=91 Identities=8% Similarity=0.147 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhc--CChhHHHHHHHHHHHHHHHHHHH
Q 009190 392 KDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAAL--SSPKAVKEFLENQRENITNVIKQ 469 (540)
Q Consensus 392 ~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~--~~~~~~ee~~e~~~~~a~~~vK~ 469 (540)
.++.+.+.++.+..+...+.+++.-|++++..+- .++|++.++|... ..+.+.+.| +..++.
T Consensus 53 l~~Li~~~Ll~q~A~~~gi~vsd~ev~~~i~~~~--------~~~~~~~~~~~~~L~~~g~~~~~~--------~~~ir~ 116 (413)
T PRK10770 53 LERLIMDNIILQMAQKMGVKISDEQLDQAIANIA--------AQNNMTLDQMRSRLAYDGLNYNTY--------RNQIRK 116 (413)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHcCCCHHHH--------HHHHHH
Confidence 4556677888889999999999999998776542 2357777766422 111122333 334555
Q ss_pred HHHHHHHHHh---cCCCCCHHHHHHHHHHHHH
Q 009190 470 NLAVGDIFKR---ENLQFSTEDLVKEVENSIA 498 (540)
Q Consensus 470 ~Lil~~Ia~~---enI~VseeEi~~ei~~~~~ 498 (540)
.++++.+... ..|.||+.|++.++.....
T Consensus 117 ~l~~~~l~~~~~~~~i~vs~~ei~~~~~~~~~ 148 (413)
T PRK10770 117 EMIISEVRNNEVRRRITILPQEVDSLAKQIGN 148 (413)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 5555555433 4799999999988776543
No 37
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=86.56 E-value=5.4 Score=41.23 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=44.2
Q ss_pred HHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHH--------HhhhhccHHHHHHHHHHHHHHHHHHHHHHHhCe
Q 009190 464 TNVIKQNLAVG-DIFKRENLQFSTEDLVKEVENSIAELK--------QQKQEYDEDRVREQVIDILEGAKVLEWLREHAE 534 (540)
Q Consensus 464 ~~~vK~~Lil~-~Ia~~enI~VseeEi~~ei~~~~~~~~--------~~~~~~~~~~~~~~i~~~l~~~Kvld~L~e~ak 534 (540)
.+.+-..||++ .++++.+++|++++|+++++++.+++. +.| ++.+.++++++..++.++.+ ...++
T Consensus 54 ~~~~L~~li~~k~l~~~~~~~v~~~evd~~i~~i~~~~g~~f~~~L~~~G--~t~~~~r~~ir~~~l~~~~v---~~~i~ 128 (298)
T PRK04405 54 GKTVLANMIIYRALEKQYGKKVSTKKVDKQYNSYKKQYGSSFDSVLSQNG--MTTSSFKQNLRTNLLSEAAL---KKLKK 128 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHH---hccCC
Confidence 34455555554 456678999999999999988876532 122 34566777777766665543 34444
Q ss_pred eee
Q 009190 535 IQY 537 (540)
Q Consensus 535 i~e 537 (540)
|++
T Consensus 129 Vtd 131 (298)
T PRK04405 129 VTN 131 (298)
T ss_pred CCH
Confidence 443
No 38
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=84.11 E-value=20 Score=36.66 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHhcCC
Q 009190 372 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQ---AGMKLNEQQLAALSS 448 (540)
Q Consensus 372 tleelk~~Ire~l~~~~~~~~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~~~~~~~l~---~~~~~~~e~~~~~~~ 448 (540)
|.++|.+.++.+... +.+.+.|+.+++.. .+.+.+.-|+++++.+.+++-.++. .++|++
T Consensus 37 t~~e~~~~~~~~~g~-------~~l~~li~~k~~~~-~i~vsd~ev~~~i~~~~~~~~~~f~~~L~~~G~~--------- 99 (283)
T PRK02998 37 TEKELSKELRQKYGE-------STLYQMVLSKALLD-KYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLK--------- 99 (283)
T ss_pred cHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------
Confidence 677777777664222 23444455555543 5788888888877766543221110 122331
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 009190 449 PKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEV 493 (540)
Q Consensus 449 ~~~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei 493 (540)
+.+.| ++.++..++++++. .+.||++|+..++
T Consensus 100 --~~~~~--------r~~i~~~l~~~~~~---~~~Vtd~ei~~~y 131 (283)
T PRK02998 100 --NEDEL--------KEKMKPEIAFEKAI---KATVTEKDVKDNY 131 (283)
T ss_pred --cHHHH--------HHHHHHHHHHHHHh---cCCCCHHHHHHhc
Confidence 11223 34566677777776 3689999998764
No 39
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=83.13 E-value=3.5 Score=37.65 Aligned_cols=36 Identities=6% Similarity=0.107 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009190 461 ENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENS 496 (540)
Q Consensus 461 ~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~ 496 (540)
..+-+.+=..-++..-|++.||.||++++++.+.+.
T Consensus 77 ~~~l~~lI~~~ll~q~A~~~gi~vsd~ev~~~i~~~ 112 (154)
T PF13624_consen 77 QQVLDQLIDQKLLLQEAKKLGISVSDAEVDDAIKQI 112 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445555556666778899999999999999999884
No 40
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=82.85 E-value=22 Score=36.43 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChh
Q 009190 371 TTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPK 450 (540)
Q Consensus 371 ~tleelk~~Ire~l~~~~~~~~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~ 450 (540)
=|.++|.+.++.+... +.+.+-|...+++ -.+.+++.-|+++++++-.++-.+ ...++...+..
T Consensus 38 It~~~~~~~l~~~~g~-------~~l~~li~~~~~~-~~i~vsd~evd~~i~~i~~~~g~~--------f~~~L~~~G~~ 101 (285)
T PRK03002 38 ITKSDFEKQLKDRYGK-------DMLYEMMAQDVIT-KKYKVSDDDVDKEVQKAKSQYGDQ--------FKNVLKNNGLK 101 (285)
T ss_pred cCHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHHHhhHH--------HHHHHHHcCCC
Confidence 3677777766654332 2344555555554 367899999998877664432111 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 009190 451 AVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVE 494 (540)
Q Consensus 451 ~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~ 494 (540)
+.++| +..+|..+++..+.+. .||++||++++.
T Consensus 102 ~~~~~--------r~~ir~~l~~~~~~~~---~vtd~ei~~~Y~ 134 (285)
T PRK03002 102 DEADF--------KNQIKFKLAMNEAIKK---SVTEKDVKDHYK 134 (285)
T ss_pred CHHHH--------HHHHHHHHHHHHHHhC---CCCHHHHHHhhc
Confidence 12333 2345566666666654 689999988764
No 41
>PRK10788 periplasmic folding chaperone; Provisional
Probab=82.07 E-value=32 Score=39.24 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHH
Q 009190 390 TAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQL 424 (540)
Q Consensus 390 ~~~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~ 424 (540)
...++.+.+.++.+-.++..+.+++..|...+..+
T Consensus 90 qvl~~LI~~~Ll~q~A~~lgi~vsd~ev~~~I~~~ 124 (623)
T PRK10788 90 QVLNRLIDEALLDQYARELGLGISDEQVKQAIFAT 124 (623)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhC
Confidence 34456677788888888899999999999877653
No 42
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.79 E-value=2.5 Score=44.94 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=45.9
Q ss_pred CcccccEEEEEEEEEeeccCCCCCcccCCCC-cCCeEEEecCCCCCCcchHHhhcCCCCCceE
Q 009190 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE-TKGFHFDTEDGDKVLPGFLDSISGIQRGETK 321 (540)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~-~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~ 321 (540)
....||.|.++|+|+. .||..|++.. ..+|.+.+|. +.++.++..++.-|+.|+.-
T Consensus 8 ~p~~g~~v~~hytg~l-----~dgt~fdss~d~~~~~~~lg~-g~vi~~~~~gv~tm~~g~~~ 64 (397)
T KOG0543|consen 8 TPMTGDKVEVHYTGTL-----LDGTKFDSSRDGDPFKFDLGK-GSVIKGWDLGVATMKKGEAG 64 (397)
T ss_pred CCCCCceeEEEEeEEe-----cCCeecccccCCCceeeecCC-CccccccccccccccccccC
Confidence 3568999999999985 5788888764 3689999995 68999999999999876654
No 43
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=70.52 E-value=10 Score=30.75 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=23.1
Q ss_pred chHHhhcCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEee
Q 009190 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (540)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik 351 (540)
.+-.+|+|+++||++++.+. . | ..+++|.+|.
T Consensus 45 PLG~ALlG~~~Gd~v~~~~~--~--------g---~~~~~I~~I~ 76 (77)
T PF01272_consen 45 PLGKALLGKKVGDEVEVELP--G--------G---ERKYEILEIE 76 (77)
T ss_dssp HHHHHHTT-BTT-EEEEEET--T--------B---EEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEeC--C--------c---eEEEEEEEEE
Confidence 47899999999999998873 2 2 5667777775
No 44
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=69.77 E-value=32 Score=31.69 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.3
Q ss_pred cchHHhhcCCCCCceEEEEe
Q 009190 306 PGFLDSISGIQRGETKSFRL 325 (540)
Q Consensus 306 p~fe~~LiG~k~Ge~~~~~v 325 (540)
-.+-.+|+|+++||++++..
T Consensus 119 SPlG~ALlG~~~Gd~v~v~~ 138 (151)
T TIGR01462 119 SPLGKALIGKKVGDVVEVQT 138 (151)
T ss_pred CHHHHHHcCCCCCCEEEEEe
Confidence 35789999999999998865
No 45
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=69.56 E-value=29 Score=32.38 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=24.8
Q ss_pred chHHhhcCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEee
Q 009190 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (540)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik 351 (540)
.+-.+|+|+++||++++.+ |. | .+.++|.+|.
T Consensus 122 PlG~ALlGk~~GD~v~v~~--p~--------g---~~~~eI~~I~ 153 (156)
T TIGR01461 122 PLARALLKKEVGDEVVVNT--PA--------G---EASWYVNAIE 153 (156)
T ss_pred HHHHHHcCCCCCCEEEEEc--CC--------C---cEEEEEEEEE
Confidence 5789999999999999876 43 3 2567777776
No 46
>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life. ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.
Probab=69.31 E-value=19 Score=31.11 Aligned_cols=49 Identities=14% Similarity=0.003 Sum_probs=39.2
Q ss_pred CceeEEEEEEEEeeecCC-CCCChHHHhhhCCCCCCHHHHHHHHHHHHHH
Q 009190 338 GVQAQFTVECRELFYRDL-PKLDDSLAGKLLPGCTTIEQVKETLLQKCRE 386 (540)
Q Consensus 338 Gk~v~F~VtVk~Ik~~~l-PELdDEfak~l~~~~~tleelk~~Ire~l~~ 386 (540)
|.+..+.++|.+|..... -++++++|...+.|..|++..++....-...
T Consensus 42 ~~~~~~~i~v~~V~~~~~f~~~~~e~a~~eGegd~sl~~~~~~~~~~~~~ 91 (105)
T cd06541 42 GQQPLAIAEVVKVEIMPMVNELSEEQEQAEGEGDLTLLYELKEHAAFFKE 91 (105)
T ss_pred CCCcEEEEEEEEEEEEECHHHccHHHHHHcCCCchhHHHHHHHHHHHhhH
Confidence 336788999999999888 7999999998876777888888777655544
No 47
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=67.72 E-value=28 Score=32.48 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=24.2
Q ss_pred chHHhhcCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEee
Q 009190 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (540)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik 351 (540)
.+-.+|+|+++||++++.+ |. | .++++|.+|.
T Consensus 124 PlG~ALlGk~vGd~v~v~~--p~--------g---~~~~eI~~I~ 155 (157)
T PRK01885 124 PMARALLKKEVGDEVTVNT--PA--------G---EAEWYVNEIE 155 (157)
T ss_pred HHHHHHhCCCCCCEEEEEc--CC--------C---cEEEEEEEEE
Confidence 4789999999999998765 43 3 2567777775
No 48
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=67.17 E-value=20 Score=33.86 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=46.2
Q ss_pred hcCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEeeecCCCCCChHHHhhhCCCCCCHHHHHHHHHHH
Q 009190 312 ISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQK 383 (540)
Q Consensus 312 LiG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik~~~lPELdDEfak~l~~~~~tleelk~~Ire~ 383 (540)
.+..++|+.+-+... -.+.=+.+|+.|..+.+-||+||=|..= ||.|.+||-..++..
T Consensus 32 ~~~~k~g~eVyIh~~------------g~i~gkAkIk~V~~KrV~ELTdEDAr~D--GF~sreELi~~Lkri 89 (188)
T COG2411 32 KIVLKPGSEVYIHSG------------GYIIGKAKIKKVKTKRVSELTDEDARLD--GFRSREELIEELKRI 89 (188)
T ss_pred cccCCCCCEEEEEEC------------CEEEEEEEEEEEEEeeHhhhhHHHHHhc--ccccHHHHHHHHHHH
Confidence 346788888877653 3577788999999999999999999853 899999987776554
No 49
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=66.46 E-value=32 Score=40.91 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=28.0
Q ss_pred chHHhhcCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEeeecCC
Q 009190 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDL 355 (540)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik~~~l 355 (540)
.+..+|+|+++||++++.+ |. | ..+++|.+|....+
T Consensus 870 PLGkALLGkkvGD~V~v~~--P~--------g---~~~yeIl~I~~~~~ 905 (906)
T PRK14720 870 PLGKSLLGKKEGDSLEFVI--ND--------T---ETRYTVLKIERASL 905 (906)
T ss_pred HHHHHHcCCCCCCEEEEEE--CC--------c---eEEEEEEEEEeecC
Confidence 5889999999999999887 43 2 36778888876544
No 50
>PRK01490 tig trigger factor; Provisional
Probab=66.17 E-value=74 Score=34.50 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhh----------ccHHHH----HHHHHHHHHHHHHHHHHHH
Q 009190 466 VIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQE----------YDEDRV----REQVIDILEGAKVLEWLRE 531 (540)
Q Consensus 466 ~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~~~~~~----------~~~~~~----~~~i~~~l~~~Kvld~L~e 531 (540)
+....-|+++|.+...+.+.+.-|+++++.+..++.+.+.. .+.+.+ +..+...+...=+++.|.+
T Consensus 283 ~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~A~~~vk~~lil~~Ia~ 362 (435)
T PRK01490 283 AKVKEAVLDALVENAEIDLPEALVEQEIDRLLRQALQQGLDLEGQFLEDTGTTEEEPREEFREQAERRVKLGLLLDEIAK 362 (435)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566689999999999999999999988877665321111 122333 3344455666677777776
Q ss_pred hCeee
Q 009190 532 HAEIQ 536 (540)
Q Consensus 532 ~aki~ 536 (540)
.-+|+
T Consensus 363 ~e~i~ 367 (435)
T PRK01490 363 AEEIE 367 (435)
T ss_pred HhCCC
Confidence 66554
No 51
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This entry represents the C-terminal domain of bacterial trigger factor proteins, which has a multi-helical structure consisting of an irregular array of long and short helices. This domain is structurally similar to the peptide-binding domain of the bacterial porin chaperone SurA.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 1T11_A 3GU0_A 3GTY_X 2NSA_A 1ZXJ_A 1W26_A.
Probab=64.45 E-value=42 Score=30.52 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----Hhhhhcc-------------HHHHHHHHHHHHHHHHHHHH
Q 009190 466 VIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELK----QQKQEYD-------------EDRVREQVIDILEGAKVLEW 528 (540)
Q Consensus 466 ~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~----~~~~~~~-------------~~~~~~~i~~~l~~~Kvld~ 528 (540)
.-...-|+++|++...+.+.+.-|+.+++.+..++. .+|.... .+.++..+...+...-+++.
T Consensus 23 ~~~~~~v~~~L~~~~~~~lP~~lv~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~a~~~lk~~lil~~ 102 (162)
T PF05698_consen 23 QQKREAVLDALIENSEVELPESLVEEEIERLIEQMEQQLKQQGMSLEQYLQMSGKTEEEFREEFREEAEKRLKQQLILDA 102 (162)
T ss_dssp HHHHHHHHHHHGGGEEEEE-HHHHHHHHHHHHHHHHHTT---TSSCCCHHHHHCTCCCSHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566899999999999999999999998876653 2232211 13455667777778888888
Q ss_pred HHHhCeee
Q 009190 529 LREHAEIQ 536 (540)
Q Consensus 529 L~e~aki~ 536 (540)
|..+-+|+
T Consensus 103 Ia~~e~I~ 110 (162)
T PF05698_consen 103 IAKKEKIE 110 (162)
T ss_dssp HHHHTT--
T ss_pred HHHHcCCC
Confidence 88776664
No 52
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=62.96 E-value=35 Score=31.66 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=24.2
Q ss_pred chHHhhcCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEee
Q 009190 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (540)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik 351 (540)
.+-.+|+|+++||++++.+ |. | ..+++|.+|.
T Consensus 125 PlG~aLlGk~~Gd~v~~~~--p~--------g---~~~~~I~~I~ 156 (157)
T PRK00226 125 PIARALIGKKVGDTVEVTT--PG--------G---EYEYEILSVE 156 (157)
T ss_pred hHHHHHhCCCCCCEEEEEc--CC--------C---cEEEEEEEEE
Confidence 4789999999999999876 43 3 3566677764
No 53
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=60.05 E-value=54 Score=29.82 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=26.5
Q ss_pred cchHHhhcCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEeee
Q 009190 306 PGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFY 352 (540)
Q Consensus 306 p~fe~~LiG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik~ 352 (540)
-.+-.+|+|+++||++++.. |. |. .++++|.+|..
T Consensus 93 SPlG~ALlG~~~Gd~v~v~~--p~--------G~--~~~~~I~~I~y 127 (137)
T PRK05753 93 APVGAALLGLSVGQSIDWPL--PG--------GK--ETHLEVLEVEY 127 (137)
T ss_pred CHHHHHHcCCCCCCEEEEEC--CC--------CC--EEEEEEEEEEe
Confidence 35789999999999998765 43 43 36777888873
No 54
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=60.04 E-value=70 Score=28.03 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcC--ChhHHHHHHHHHH
Q 009190 394 QATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALS--SPKAVKEFLENQR 460 (540)
Q Consensus 394 ~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~--~~~~~ee~~e~~~ 460 (540)
..+.+.++.+-.+...+.+++.-|++.+.++. +++|++.+++...- .+-+.++|++.++
T Consensus 49 ~LI~e~L~~q~ak~~gI~vsd~evd~~i~~ia--------~~n~ls~~ql~~~L~~~G~s~~~~r~~ir 109 (118)
T PF09312_consen 49 QLIDEKLQLQEAKRLGIKVSDEEVDEAIANIA--------KQNNLSVEQLRQQLEQQGISYEEYREQIR 109 (118)
T ss_dssp HHHHHHHHHHHHHHCT----HHHHHHHHHHHH--------HHTT--HHHHHHHCHHCT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--------HHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34445555555678889999998888776543 34678888776431 2334555544333
No 55
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=57.23 E-value=1.5e+02 Score=31.70 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HHhhhh---c---cHHH----HHHHHHHHHHHHHHHHHHHH
Q 009190 466 VIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAEL----KQQKQE---Y---DEDR----VREQVIDILEGAKVLEWLRE 531 (540)
Q Consensus 466 ~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~----~~~~~~---~---~~~~----~~~~i~~~l~~~Kvld~L~e 531 (540)
.....-|+++|++...+.+.+.-|+.++..+..++ .++|.. | +.+. ++..++..+...-+++.|.+
T Consensus 273 ~~~~~~i~~~l~~~~~~~lPe~~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~~~~~~~~a~~~~k~~lil~~ia~ 352 (408)
T TIGR00115 273 NKLKEQLLDKLVENNEFELPESLVEQEIDRLLEQALQQLQQQGIDLEEYLKDTEEELREEFREEAERRVKLGLILEEIAK 352 (408)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556689999999999999999999888776543 223321 1 2222 33445566677777777777
Q ss_pred hCeee
Q 009190 532 HAEIQ 536 (540)
Q Consensus 532 ~aki~ 536 (540)
+-+|+
T Consensus 353 ~e~I~ 357 (408)
T TIGR00115 353 KEKIE 357 (408)
T ss_pred HhCCC
Confidence 76664
No 56
>cd06553 ASCH_Ef3133_like ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=56.24 E-value=54 Score=29.51 Aligned_cols=51 Identities=12% Similarity=0.028 Sum_probs=41.7
Q ss_pred CCceeEEEEEEEEeeecCCCCCChHHHhhhCCCCCCHHHHHHHHHHHHHHHH
Q 009190 337 RGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVE 388 (540)
Q Consensus 337 aGk~v~F~VtVk~Ik~~~lPELdDEfak~l~~~~~tleelk~~Ire~l~~~~ 388 (540)
.|+ ..+.+++.+|.....-++|++||..=+.|..|++.+|+..+.=.....
T Consensus 55 ~g~-p~cvi~~~~V~~~~f~~vt~~~A~~EGegd~sl~~Wr~~h~~ff~~~~ 105 (127)
T cd06553 55 QGK-PVCIIETTEVEVVPFNDVTEEFAYAEGEGDRSLEYWRKAHEAFFTREL 105 (127)
T ss_pred CCC-EEEEEEEEEEEEEEcccCCHHHHHHhCCCccCHHHHHHHHHHHHHHHH
Confidence 444 578899999999999999999999876567789999998877665543
No 57
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=53.98 E-value=60 Score=30.29 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=24.9
Q ss_pred chHHhhcCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEeee
Q 009190 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFY 352 (540)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik~ 352 (540)
.+-.+|+|+++||++++.+ |. |. .+++|.+|..
T Consensus 124 PlG~ALlGk~vGD~v~v~~--p~--------g~---~~~eI~~I~~ 156 (158)
T PRK05892 124 PLGQALAGHQAGDTVTYST--PQ--------GP---AQVELLAVKL 156 (158)
T ss_pred HHHHHHhCCCCCCEEEEEc--CC--------Cc---EEEEEEEEEc
Confidence 4789999999999998765 43 32 5677787753
No 58
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=53.69 E-value=78 Score=29.11 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 009190 458 NQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEV 493 (540)
Q Consensus 458 ~~~~~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei 493 (540)
.+++++=..+-...++++=+++.||+||++|+...+
T Consensus 80 q~~~qvW~~~V~~~ll~~e~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 80 QIRNQVWNQMVQNILLEQEFEKLGITVSDDELQDML 115 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHH
Confidence 356666677778889999999999999999998877
No 59
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=53.66 E-value=79 Score=29.63 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=15.2
Q ss_pred chHHhhcCCCCCceEEE
Q 009190 307 GFLDSISGIQRGETKSF 323 (540)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~ 323 (540)
.+-.+|+|+++||++++
T Consensus 133 PlG~ALlGk~vGD~V~v 149 (160)
T PRK06342 133 PVARALMGKAVGDVVSV 149 (160)
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 47899999999999976
No 60
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=47.19 E-value=2.9e+02 Score=30.97 Aligned_cols=137 Identities=13% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCChHHHhhhCCC-CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHHHHHHHHHHH
Q 009190 357 KLDDSLAGKLLPG-CTTIEQVKETLLQK--CREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQ 433 (540)
Q Consensus 357 ELdDEfak~l~~~-~~tleelk~~Ire~--l~~~~~~~~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~~~~~~~l~ 433 (540)
.+++++.++.... -...++..+.+.++ |.++...+.-....-++++.|+++ -++++++.+-+-+.+......-.
T Consensus 439 ~i~~~~l~~~~~~~Pe~~~ek~~r~~~eygLs~~LA~~~~~~~~~~~FEel~e~---~v~p~~~A~~L~~~~~~L~reg~ 515 (631)
T COG2511 439 RIDEELLEKIKENLPELPEEKVERYVKEYGLSKELAEQLASDPRVDLFEELVEK---GVDPTLIASTLVNTLPELRREGV 515 (631)
T ss_pred ccCHHHHHHHhhhCCCCHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcCC
Confidence 4677888755321 24566666666552 334444444444555666666665 78888887665555443221100
Q ss_pred hcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCC-CCCHHHHHHHHHHHHHH
Q 009190 434 AGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNL-----AVGDIFKRENL-QFSTEDLVKEVENSIAE 499 (540)
Q Consensus 434 ~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~L-----il~~Ia~~enI-~VseeEi~~ei~~~~~~ 499 (540)
.-.+++.+.+..+...-..-.+ .++.++..++.-. -.+.++++.+| ..+.+||+.-+++++.+
T Consensus 516 ~i~~l~~~~i~~~~~~~~~g~i---ake~iee~l~~l~~~p~~~~~e~~~~~gL~~ls~eEve~iI~eii~~ 584 (631)
T COG2511 516 EIDNLDDEHIEELLRLVSEGKI---AKEAIEEILKALAENPGKDAAEIAEKLGLKELSEEEVEKIIDEIIES 584 (631)
T ss_pred ccccCCHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhCCCCCHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence 0112444443221000000011 1222333333222 26788899985 77999999988887754
No 61
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=46.25 E-value=1.7e+02 Score=28.58 Aligned_cols=38 Identities=8% Similarity=-0.043 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 009190 462 NITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAEL 500 (540)
Q Consensus 462 ~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~ 500 (540)
.+++.+.....+....+. .+.||++|+++++++....|
T Consensus 96 ~~r~~ll~~~~~~~~v~~-~~~vse~ev~~~Y~~~~~~f 133 (232)
T TIGR02925 96 AAKREILARAYLRQLAGA-QSKPSPEEAKSYFQEHPQLF 133 (232)
T ss_pred HHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHhCHHhc
Confidence 344455555555554432 48999999999998765544
No 62
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=44.77 E-value=3.3e+02 Score=29.90 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----Hhhhhc------cHHHHHHHHH----HHHHHHHHHH
Q 009190 462 NITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELK----QQKQEY------DEDRVREQVI----DILEGAKVLE 527 (540)
Q Consensus 462 ~a~~~vK~~Lil~~Ia~~enI~VseeEi~~ei~~~~~~~~----~~~~~~------~~~~~~~~i~----~~l~~~Kvld 527 (540)
++....+..-+++++++...+.+.+.-|++++..+..++. ..|..+ +.+.++++++ ..+...-+++
T Consensus 279 ~~~~~~~~~~~~~~L~e~~~~dlP~sli~~E~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~A~krVk~~Lil~ 358 (441)
T COG0544 279 EATLEKRKEQLLDALVEANDFDLPESLVEAEIDNLLKQALQQLQQQGIDSLEASGESEEELREEFKEEAEKRVKLGLLLE 358 (441)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444677788899999999999999999999988876532 233321 2344444443 3444555555
Q ss_pred HHHHhCee
Q 009190 528 WLREHAEI 535 (540)
Q Consensus 528 ~L~e~aki 535 (540)
-|.+..++
T Consensus 359 ~ia~~~~i 366 (441)
T COG0544 359 EIAKEEKL 366 (441)
T ss_pred HHHHHcCC
Confidence 55554444
No 63
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=38.15 E-value=1.2e+02 Score=25.48 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=44.4
Q ss_pred cccCCCCcceEEEeecCCceeEEEEEEc-hhhHHHHHHHHHHHHHhhCCCCCCC
Q 009190 82 EKDRLPADIEVTESPEPNSTVRLSVEVP-EAVCKDSYKRVLNELMKQVKIPGFR 134 (540)
Q Consensus 82 ~~~~~~~~m~vt~~~~~~~~~~l~v~v~-~~~v~~~~~k~l~~~~k~~~IpGFR 134 (540)
++.-...++.|+++..++....+.++-+ ...+.+.+++.+.+.-++..|++-+
T Consensus 8 aGtleSsD~~V~v~p~~~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~i~~~~ 61 (87)
T PF06857_consen 8 AGTLESSDLEVTVEPAESGGIEIELESSVVKQFGDQIRAVIRETLEELGIEDAK 61 (87)
T ss_pred EcccccCcEEEEEEeCCCCcEEEEEEchHHhhhHHHHHHHHHHHHHhcCCCceE
Confidence 3444567899999999778888888888 8899999999999999999998744
No 64
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=37.53 E-value=23 Score=38.62 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=26.0
Q ss_pred EEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhC
Q 009190 106 VEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVG 148 (540)
Q Consensus 106 v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G 148 (540)
|.++++++.+.++|. ..-|||+||||.-...+++...
T Consensus 330 i~~nP~~iAenL~k~------G~~IPGiRPGk~T~~yL~~~i~ 366 (434)
T PRK12907 330 IQVNPEQMAENLKKQ------NGYVPGIRPGKSTEQYVTKILY 366 (434)
T ss_pred HccCHHHHHHHHHHC------CCcCCCcCCChhHHHHHHHHHH
Confidence 456666666555442 5689999999988888776543
No 65
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=33.43 E-value=2.7e+02 Score=32.43 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=16.4
Q ss_pred cchHHhhcCCCCCceEEEE
Q 009190 306 PGFLDSISGIQRGETKSFR 324 (540)
Q Consensus 306 p~fe~~LiG~k~Ge~~~~~ 324 (540)
-.+..+|+|+++||++++.
T Consensus 685 SPIGkALLGkkvGD~V~v~ 703 (718)
T PRK06330 685 SKLAQEMLGKKVGDSVQFQ 703 (718)
T ss_pred CHHHHHhcCCCCCCEEEEe
Confidence 3578999999999999884
No 66
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=32.70 E-value=5.9e+02 Score=26.54 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=48.4
Q ss_pred CCCCChHHHhhhCC-CCC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCc-CCChhHHHHHHHHHHHHHH
Q 009190 355 LPKLDDSLAGKLLP-GCT--TIEQVKETLLQKCREVEQTAK-DQATDNAILDQLYKMVEI-DIPQSLFEEQGRQLYGAQL 429 (540)
Q Consensus 355 lPELdDEfak~l~~-~~~--tleelk~~Ire~l~~~~~~~~-~~~~~~~il~~L~e~~~~-~lPe~lv~~e~~~~~~~~~ 429 (540)
+.=|||+|.+++.. +.. -++.|+..|+..|.......- ...-...-++.+++++.- -+-..-+-+++-.+.++..
T Consensus 153 isild~eFl~~v~~~~~k~~~~e~L~~~l~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~el~ 232 (335)
T PF11867_consen 153 ISILDDEFLEEVKKMKSKNLKAELLEKLLRDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEELIKLAKELR 232 (335)
T ss_pred hhhcCHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 34478999988742 222 367889889888887766544 333445556777775543 2322222222333333322
Q ss_pred HHHH--hcCCCCHHHH
Q 009190 430 LQMQ--AGMKLNEQQL 443 (540)
Q Consensus 430 ~~l~--~~~~~~~e~~ 443 (540)
..-+ ...|++.+++
T Consensus 233 ~~~~r~~~~gLseeE~ 248 (335)
T PF11867_consen 233 EEEERAEELGLSEEEL 248 (335)
T ss_pred HHHhcccccCCCHHHH
Confidence 2111 2457777664
No 67
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=30.84 E-value=35 Score=37.20 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=17.7
Q ss_pred hCCCCCCCCCCCcHHHHHHhhC
Q 009190 127 QVKIPGFRPGKIPESVLVGFVG 148 (540)
Q Consensus 127 ~~~IpGFRkGKvP~~vi~k~~G 148 (540)
-.-|||+||||.=...+.+...
T Consensus 348 G~~IPGiRpg~~te~yL~rvi~ 369 (436)
T COG0201 348 GGFIPGIRPGKDTEKYLNRVIP 369 (436)
T ss_pred CCcCCCcCCChhHHHHHHHHHH
Confidence 5689999999988888876543
No 68
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=30.13 E-value=45 Score=35.95 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=25.1
Q ss_pred EEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhCh
Q 009190 107 EVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGE 149 (540)
Q Consensus 107 ~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G~ 149 (540)
.++++++.+.++| ...-|||+||||.=...+++...+
T Consensus 296 ~~nP~diA~~Lkk------~g~~IpGiRpG~~T~~yL~~~i~~ 332 (395)
T TIGR02920 296 NINPKEISKSFRK------SGNYIPGIAPGKDTQRYLNRLARR 332 (395)
T ss_pred eECHHHHHHHHHH------CCCCccCcCCCchHHHHHHHHHHH
Confidence 3446666444432 367899999999888888766543
No 69
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=26.45 E-value=49 Score=35.84 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=25.2
Q ss_pred EEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhCh
Q 009190 106 VEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGE 149 (540)
Q Consensus 106 v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G~ 149 (540)
+.++++++.+.++| ...-|||+||||.=...+++..-+
T Consensus 314 ~~~~p~~iA~~lkk------~g~~IpGiRpG~~T~~yL~~~i~~ 351 (410)
T TIGR00967 314 LQLNPEDMAKNLKK------QGMFIPGIRPGKMTEKYLKRVIPR 351 (410)
T ss_pred HccCHHHHHHHHHH------CCCcCCCcCCChhHHHHHHHHHHH
Confidence 34455655444432 356899999998878888766543
No 70
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=24.80 E-value=49 Score=34.87 Aligned_cols=27 Identities=41% Similarity=0.554 Sum_probs=21.0
Q ss_pred HHHh-hCCCCCCCCCCCcHHHHHHhhCh
Q 009190 123 ELMK-QVKIPGFRPGKIPESVLVGFVGE 149 (540)
Q Consensus 123 ~~~k-~~~IpGFRkGKvP~~vi~k~~G~ 149 (540)
+++| ..-|||+||||.-...++++.-.
T Consensus 273 ~lkk~g~~I~GirpG~~T~~yL~~~i~~ 300 (346)
T PF00344_consen 273 NLKKSGDYIPGIRPGKPTEKYLNKVIPR 300 (346)
T ss_dssp HCHCTTSSSSTCTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCEeCCCCCChhHHHHHHHHHHH
Confidence 3334 56899999999999988877654
No 71
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=24.78 E-value=50 Score=35.83 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=25.2
Q ss_pred EEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhC
Q 009190 106 VEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVG 148 (540)
Q Consensus 106 v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G 148 (540)
+.++++++.+.+. ....-|||+||||--...+++..-
T Consensus 316 i~~~p~~iA~~Lk------k~g~~IpGvRpG~~T~~yL~~~i~ 352 (417)
T CHL00161 316 IVLNPKDISENLQ------KMAVSIPGIRPGKATTKYLKKTLN 352 (417)
T ss_pred HhcCHHHHHHHHH------HCCCcCCCcCCChhHHHHHHHHHH
Confidence 3456666654444 246789999999877888776553
No 72
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=24.49 E-value=72 Score=25.44 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=22.2
Q ss_pred HHHHHHhhcCcccccccCCcccccEEEEE
Q 009190 242 ELRRRHKSLGSLKIVTDRGLQVGDIAIVD 270 (540)
Q Consensus 242 ~L~~~~~~~~~~~~v~dr~~~~GD~V~id 270 (540)
.+.+.++..+-.......+++.||.|.|-
T Consensus 35 ~f~~~L~~~Gv~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 35 RFARKLKKLGVEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHHHCCHHHHHHHcCCCCCCEEEEc
Confidence 67788888775554456899999999874
No 73
>COG4086 Predicted secreted protein [Function unknown]
Probab=23.93 E-value=5e+02 Score=26.68 Aligned_cols=107 Identities=14% Similarity=0.286 Sum_probs=63.0
Q ss_pred HHhh--cCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEeeecCCCCCChHHH-----------hhhCCCCCC--H
Q 009190 309 LDSI--SGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLA-----------GKLLPGCTT--I 373 (540)
Q Consensus 309 e~~L--iG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik~~~lPELdDEfa-----------k~l~~~~~t--l 373 (540)
..+| .|+..++ +++..+||-. +...|+|-=--|++-+ --+.||=+-.++ .+. |.+- .
T Consensus 122 anAL~TaGi~~a~-V~VtaP~pvS-GeAALaGv~KayE~a~----g~~Ipe~~KqvaneEL~~~sel~~k~--G~d~~r~ 193 (299)
T COG4086 122 ANALVTAGIEDAK-VTVTAPFPVS-GEAALAGVYKAYEAAV----GVQIPEANKQVANEELVATSELGDKI--GDDPRRA 193 (299)
T ss_pred HHHHHhcCCCCce-EEEecCccCc-cHHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHHHHHhhhhc--CCCHHHH
Confidence 3445 4666554 4466667764 3344555321222211 123455444444 333 4555 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHHH
Q 009190 374 EQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLY 425 (540)
Q Consensus 374 eelk~~Ire~l~~~~~~~~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~~ 425 (540)
.+|-+.|++.+.++.. ....-.+.+++.+.+.+.+.+|+.-++.-++.++
T Consensus 194 a~l~~~VK~~~a~~~~--~~~~dirkvv~dv~~~ynvnltd~qvn~i~~~~~ 243 (299)
T COG4086 194 AALMAEVKEEVAKQKV--DDPADIRKVVDDVANNYNVNLTDTQVNQIVNLFL 243 (299)
T ss_pred HHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8899999999888765 1222346677889999999999988876554433
No 74
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=23.60 E-value=5e+02 Score=23.17 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHHH
Q 009190 391 AKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQL 424 (540)
Q Consensus 391 ~~~~~~~~~il~~L~e~~~~~lPe~lv~~e~~~~ 424 (540)
..++.+.+.++.+-.++..+.+++..|+..+..+
T Consensus 79 ~l~~lI~~~ll~q~A~~~gi~vsd~ev~~~i~~~ 112 (154)
T PF13624_consen 79 VLDQLIDQKLLLQEAKKLGISVSDAEVDDAIKQI 112 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTT----HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556677888888889999999999999887764
No 75
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=23.26 E-value=62 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHHhhcCcccccccCCcccccEEEE
Q 009190 242 ELRRRHKSLGSLKIVTDRGLQVGDIAIV 269 (540)
Q Consensus 242 ~L~~~~~~~~~~~~v~dr~~~~GD~V~i 269 (540)
.+.+.++..+-.......+++.||.|.|
T Consensus 35 rf~~~L~~~Gv~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 35 RFQRKLKKMGVEKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHHHHTTHHHHHHTTT--TT-EEEE
T ss_pred HHHHHHHHCCHHHHHHHcCCCCCCEEEE
Confidence 6778888887555545688999999986
No 76
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=21.52 E-value=1.3e+02 Score=27.74 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=23.9
Q ss_pred chHHhhcCCCCCceEEEEecCCCCcccccCCCceeEEEEEEEEee
Q 009190 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (540)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~v~fPedy~~~~laGk~v~F~VtVk~Ik 351 (540)
.+-.+|+|+++||++.+..+ . -..+++|.+|.
T Consensus 118 Pig~aLlGk~vGd~v~v~~p--~-----------g~~~~~I~~I~ 149 (151)
T COG0782 118 PLGRALLGKKVGDTVEVNTP--G-----------GEKEVEILSIE 149 (151)
T ss_pred HHHHHHhCCCCCCEEEEecC--C-----------ceEEEEEEEEe
Confidence 47789999999999988763 2 23566677765
No 77
>PF10884 DUF2683: Protein of unknown function (DUF2683); InterPro: IPR020271 This entry contains proteins with no known function.
Probab=20.97 E-value=71 Score=26.30 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=20.3
Q ss_pred CCCChHHHhhhC--------CCCCCHHHHHHHH
Q 009190 356 PKLDDSLAGKLL--------PGCTTIEQVKETL 380 (540)
Q Consensus 356 PELdDEfak~l~--------~~~~tleelk~~I 380 (540)
|||+.||++++. +.++|+++||+.+
T Consensus 46 pElkPEfVeki~~i~k~~~~i~i~svd~LRk~~ 78 (80)
T PF10884_consen 46 PELKPEFVEKIKKIMKGKKFIPIGSVDELRKRY 78 (80)
T ss_pred cccCHHHHHHHHHHHhcccCcCcCcHHHHHHHh
Confidence 899999998752 2478999999876
No 78
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=20.69 E-value=67 Score=35.00 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=23.9
Q ss_pred EEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhC
Q 009190 107 EVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVG 148 (540)
Q Consensus 107 ~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G 148 (540)
.++++++.+.++| ...-|||+||||-=...+.+..-
T Consensus 329 ~~~p~~iAe~l~k------~g~~IpGiRpG~~T~~yL~~~i~ 364 (426)
T PRK09204 329 QFNPEEIAENLKK------SGGFIPGIRPGEQTAEYLDKVLT 364 (426)
T ss_pred hcCHHHHHHHHHH------CCCcccCCCCChhHHHHHHHHHH
Confidence 3556655444432 35689999999987777766543
Done!