Query 009192
Match_columns 540
No_of_seqs 352 out of 2285
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 21:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.6E-55 9.9E-60 441.6 53.9 434 39-480 12-451 (455)
2 PRK10189 MATE family multidrug 100.0 2.6E-52 5.5E-57 425.8 52.2 433 40-477 25-467 (478)
3 PRK00187 multidrug efflux prot 100.0 2.8E-51 6.1E-56 418.2 55.4 428 38-471 4-443 (464)
4 PRK01766 multidrug efflux prot 100.0 3.3E-49 7.1E-54 404.7 55.4 437 35-476 3-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 3.8E-48 8.3E-53 394.7 52.5 423 40-471 8-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 1E-47 2.2E-52 388.3 53.5 423 40-476 5-434 (441)
7 KOG1347 Uncharacterized membra 100.0 3.5E-40 7.7E-45 329.8 32.8 442 39-486 23-466 (473)
8 TIGR01695 mviN integral membra 100.0 3.4E-35 7.4E-40 305.8 51.1 413 46-472 2-428 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 8.7E-35 1.9E-39 301.8 47.7 415 47-472 2-434 (488)
10 TIGR00797 matE putative efflux 100.0 2.3E-34 5.1E-39 284.4 42.5 336 52-394 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 4E-32 8.7E-37 275.1 46.0 404 46-471 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.6E-27 3.4E-32 241.5 50.2 386 74-472 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 6.3E-26 1.4E-30 225.2 50.0 417 44-472 7-437 (518)
14 PRK10459 colanic acid exporter 100.0 1.5E-25 3.4E-30 232.3 45.4 397 43-471 4-404 (492)
15 COG2244 RfbX Membrane protein 99.9 4.5E-23 9.7E-28 213.4 41.9 390 41-454 3-394 (480)
16 COG0534 NorM Na+-driven multid 99.9 2.2E-20 4.9E-25 189.2 26.3 208 263-473 13-222 (455)
17 PRK10367 DNA-damage-inducible 99.9 2.7E-20 5.9E-25 188.6 26.0 207 263-471 5-211 (441)
18 PRK10189 MATE family multidrug 99.9 2.6E-20 5.6E-25 190.6 25.2 205 263-470 25-235 (478)
19 PRK00187 multidrug efflux prot 99.9 3.7E-20 8.1E-25 189.4 26.0 206 263-472 6-215 (464)
20 PRK09575 vmrA multidrug efflux 99.9 8.4E-20 1.8E-24 186.5 24.2 206 263-471 8-214 (453)
21 PRK01766 multidrug efflux prot 99.9 2.4E-19 5.2E-24 184.0 27.0 207 263-472 8-218 (456)
22 TIGR01695 mviN integral membra 99.8 5.1E-17 1.1E-21 169.4 33.2 232 39-282 218-454 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 6.6E-15 1.4E-19 140.5 34.4 271 46-336 1-273 (273)
24 TIGR00797 matE putative efflux 99.7 3.2E-16 7E-21 154.9 24.5 194 275-471 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.7 3.6E-18 7.8E-23 149.3 8.0 162 275-438 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 9.6E-15 2.1E-19 148.4 32.1 207 39-245 193-404 (451)
27 TIGR02900 spore_V_B stage V sp 99.7 3.5E-15 7.5E-20 155.1 27.0 202 37-243 218-433 (488)
28 COG0728 MviN Uncharacterized m 99.7 1.2E-13 2.7E-18 137.9 35.8 237 38-285 226-467 (518)
29 PF01554 MatE: MatE; InterPro 99.7 1.6E-17 3.5E-22 145.2 5.2 160 52-212 1-162 (162)
30 PRK15099 O-antigen translocase 99.7 2.6E-14 5.7E-19 144.9 27.4 201 37-242 208-410 (416)
31 PRK10459 colanic acid exporter 99.7 4.7E-13 1E-17 139.0 35.5 199 39-241 202-402 (492)
32 PF13440 Polysacc_synt_3: Poly 99.6 8.2E-12 1.8E-16 117.5 31.7 246 62-334 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 1.7E-12 3.7E-17 134.5 28.0 187 39-229 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.2 3.9E-08 8.4E-13 100.9 32.9 421 48-472 5-470 (549)
35 KOG1347 Uncharacterized membra 99.2 9.2E-10 2E-14 111.2 18.6 206 263-472 24-230 (473)
36 KOG2864 Nuclear division RFT1 99.1 1.2E-06 2.7E-11 84.0 32.8 420 42-471 6-448 (530)
37 PF07260 ANKH: Progressive ank 99.0 1.4E-06 3E-11 80.1 29.4 313 40-367 7-343 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 1.3E-05 2.9E-10 68.2 18.5 79 166-244 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.3 9.8E-05 2.1E-09 76.2 19.9 201 43-243 252-469 (549)
40 KOG2864 Nuclear division RFT1 98.0 0.004 8.6E-08 60.6 23.1 202 37-242 236-447 (530)
41 PF01943 Polysacc_synt: Polysa 97.9 0.0021 4.5E-08 60.9 21.2 186 272-471 4-190 (273)
42 PF07260 ANKH: Progressive ank 97.9 0.0037 8E-08 58.1 20.0 160 263-428 7-169 (345)
43 PF14667 Polysacc_synt_C: Poly 97.8 0.00015 3.2E-09 61.7 9.2 79 391-472 2-80 (146)
44 PF13440 Polysacc_synt_3: Poly 97.7 0.0095 2.1E-07 55.6 21.2 161 292-470 10-171 (251)
45 COG4267 Predicted membrane pro 97.3 0.16 3.6E-06 48.5 33.9 343 91-465 71-435 (467)
46 PF12794 MscS_TM: Mechanosensi 76.9 78 0.0017 31.0 23.0 23 420-442 194-216 (340)
47 COG4267 Predicted membrane pro 76.3 82 0.0018 30.9 20.4 135 320-471 76-210 (467)
48 PF03547 Mem_trans: Membrane t 74.1 21 0.00045 35.7 9.4 14 353-366 35-48 (385)
49 COG2211 MelB Na+/melibiose sym 72.1 1.2E+02 0.0027 31.1 28.2 51 42-92 10-63 (467)
50 PF04505 Dispanin: Interferon- 64.5 43 0.00094 24.9 6.9 41 325-365 37-77 (82)
51 PF05975 EcsB: Bacterial ABC t 60.8 1.9E+02 0.004 29.0 15.5 37 339-375 88-124 (386)
52 PF06963 FPN1: Ferroportin1 (F 55.4 2.4E+02 0.0053 28.7 17.0 70 292-371 28-97 (432)
53 PF04791 LMBR1: LMBR1-like mem 55.2 1.2E+02 0.0026 31.3 10.9 51 309-359 76-130 (471)
54 PF11286 DUF3087: Protein of u 52.3 97 0.0021 26.5 7.7 26 501-526 125-150 (165)
55 PF05684 DUF819: Protein of un 48.3 2.9E+02 0.0064 27.5 12.9 24 339-362 72-95 (378)
56 PRK03612 spermidine synthase; 42.5 4.3E+02 0.0093 27.8 22.3 44 198-241 153-197 (521)
57 TIGR00822 EII-Sor PTS system, 39.8 3.2E+02 0.007 25.6 16.6 36 316-351 108-143 (265)
58 PF10160 Tmemb_40: Predicted m 39.5 3.2E+02 0.0069 25.4 10.5 53 339-393 109-161 (261)
59 PF01102 Glycophorin_A: Glycop 39.3 43 0.00093 27.1 3.6 25 448-472 67-91 (122)
60 KOG1608 Protein transporter of 32.3 4.4E+02 0.0096 24.9 11.0 12 108-119 14-25 (374)
61 PF06027 DUF914: Eukaryotic pr 31.2 5.1E+02 0.011 25.3 18.8 45 194-238 77-121 (334)
62 TIGR00383 corA magnesium Mg(2+ 29.0 1.4E+02 0.0029 28.9 6.1 54 418-474 256-317 (318)
63 KOG1330 Sugar transporter/spin 27.5 5.1E+02 0.011 26.6 9.6 52 59-111 40-91 (493)
64 PRK09546 zntB zinc transporter 26.0 1.7E+02 0.0037 28.4 6.2 51 422-474 266-323 (324)
65 PRK01637 hypothetical protein; 25.9 5.7E+02 0.012 24.2 18.4 13 328-340 112-124 (286)
66 PF05977 MFS_3: Transmembrane 25.6 8E+02 0.017 25.8 36.2 45 47-91 13-59 (524)
67 KOG2082 K+/Cl- cotransporter K 24.5 5.6E+02 0.012 28.1 9.5 114 40-155 111-234 (1075)
68 TIGR00383 corA magnesium Mg(2+ 23.5 2.6E+02 0.0057 26.9 7.0 17 229-245 300-316 (318)
69 PRK10929 putative mechanosensi 22.7 1.3E+03 0.027 27.1 21.2 25 341-366 592-616 (1109)
70 PF03904 DUF334: Domain of unk 22.0 4.9E+02 0.011 23.6 7.4 62 115-176 141-211 (230)
71 PF15102 TMEM154: TMEM154 prot 21.7 23 0.0005 29.4 -0.7 19 509-527 119-137 (146)
72 TIGR00939 2a57 Equilibrative N 21.2 8.9E+02 0.019 24.7 16.3 24 454-477 180-203 (437)
73 COG0598 CorA Mg2+ and Co2+ tra 20.5 7.8E+02 0.017 23.8 10.0 23 452-474 299-321 (322)
74 PF01102 Glycophorin_A: Glycop 20.2 1.4E+02 0.0031 24.1 3.5 23 221-243 68-90 (122)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.6e-55 Score=441.60 Aligned_cols=434 Identities=24% Similarity=0.305 Sum_probs=410.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChh
Q 009192 39 TLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFR 118 (540)
Q Consensus 39 ~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~ 118 (540)
.++..|+++++++|++++++...+++++|+.++||+|++++|+.+++.++..++ ..+..|++.|..++++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 566899999999999999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 009192 119 LLHKTLLMAILLLLLATVPIT-FFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMF 197 (540)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (540)
++++..++++.+..+++++.. +.+.+.++++.+++.++|+.+.+.+|+++..++.|+..++.++.+++|+.|+++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 999999999999999997777 5589999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh---h-cCcchHHHHHHHHHHHHHHHHHHHHHhhccc-cCCCcccCCCCChhhHhhHHHhHHh
Q 009192 198 TSALSLAFHVPVNILLVK---A-RGIEGIAMAIWISDLLVVILLALYLLVTECY-GKEGKWKEGGWWEQGVSDWLRLLKL 272 (540)
Q Consensus 198 ~~~~~~~~~i~~~~~li~---~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (540)
.++++.++|+++|++|+. + +|+.|+++||++++.+..++..+++.++++. .. ... +..+++++.+|++++.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~i~~l 246 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSL--FKK--KLLKPDRKLLKEILRL 246 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhh--hhh--hccCCCHHHHHHHHHh
Confidence 999999999999999993 3 9999999999999999999999999776642 11 212 2334568999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 009192 273 CGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSL 352 (540)
Q Consensus 273 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~ 352 (540)
|+|..+++......+...+.+++++| ++++|+|+++.++.++.++++.|++++.++++++++|+||++++++..+.+.
T Consensus 247 G~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~ 324 (455)
T COG0534 247 GLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLAL 324 (455)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhh
Q 009192 353 GVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLA 432 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 432 (540)
.+++.+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+++||.||++.+++.++++.|.+.
T Consensus 325 ~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~ 404 (455)
T COG0534 325 KLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFR 404 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Q 009192 433 LPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGK 480 (540)
Q Consensus 433 l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (540)
+|+.+++.+.. +|..|+|+++..++.+..++..+++++.+|+++..+
T Consensus 405 lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (455)
T COG0534 405 LPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA 451 (455)
T ss_pred HhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999876 799999999999999999999999999999877543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.6e-52 Score=425.75 Aligned_cols=433 Identities=14% Similarity=0.152 Sum_probs=398.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChhH
Q 009192 40 LSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRL 119 (540)
Q Consensus 40 ~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 119 (540)
-+..|+++++++|.+++++...+...+|+.+++++|++++|+++++.++..+. ..+..|++.+.+++++|++|++|+++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 34599999999999999999999999999999999999999999999999886 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC--CChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 009192 120 LHKTLLMAILLLLLATVPITF-FWLNVDKILIHFG--QQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIM 196 (540)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (540)
+++..+.++.++..++++.++ .+.+.++++.+++ .|+|+.+.+.+|+++..++.|+..+...+.+++|+.|+++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 999999999999999998874 5778899999994 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCC-CChhhHhhHHHh
Q 009192 197 FTSALSLAFHVPVNILLV------KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGG-WWEQGVSDWLRL 269 (540)
Q Consensus 197 ~~~~~~~~~~i~~~~~li------~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 269 (540)
..+++..++|++++++++ +++|+.|+++|+.+++.+..++..+++.++++...+++++ + +.+.+++.+|++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i 261 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLK--SYFKPLNFAIIWEV 261 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeec--cccccCCHHHHHHH
Confidence 999999999999999998 3789999999999999999888766654332211111222 2 222357899999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 009192 270 LKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAY 349 (540)
Q Consensus 270 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~ 349 (540)
++.|+|..+............+.+++.+| ++++|+|+++.++.++.+++..|++++.+|.+++++|++|++++|+..+
T Consensus 262 l~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~ 339 (478)
T PRK10189 262 MGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLR 339 (478)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999998888888888899998 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHH
Q 009192 350 VSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFY 429 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 429 (540)
.+..++++.++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.++|.||++.++++++.+.|
T Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~ 419 (478)
T PRK10189 340 HVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMW 419 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHccHHHH
Q 009192 430 LLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDE 477 (540)
Q Consensus 430 ~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 477 (540)
++.+|+.+++....++|+.|+|++..+++.+..++.++++++.+|+++
T Consensus 420 ~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 420 GCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999999999988778999999999999999999999999999999884
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.8e-51 Score=418.23 Aligned_cols=428 Identities=22% Similarity=0.259 Sum_probs=391.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCh
Q 009192 38 TTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNF 117 (540)
Q Consensus 38 ~~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~ 117 (540)
.+++..|+++++++|.+++++...+.+.+|+.+++|+|++++++++++.++..+. ..+..|++++..++++|++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4567899999999999999999999999999999999999999999999999986 788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 009192 118 RLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMF 197 (540)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (540)
+++++.++.++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+....++++|+.|+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999988776655779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCc-ccCCCCChhhHhhHHHhH
Q 009192 198 TSALSLAFHVPVNILLV------KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGK-WKEGGWWEQGVSDWLRLL 270 (540)
Q Consensus 198 ~~~~~~~~~i~~~~~li------~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 270 (540)
.++++.++|++++++|+ +++|+.|+++|+.+++.+..+...++++++++.++ .+ ++ ++.+++++.+|+++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~k~il 239 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAA-YPLRK--GLSRPSRAALRELW 239 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhh-hhhhc--cccCCCHHHHHHHH
Confidence 99999999999999998 35899999999999998888777666654332211 01 11 22234578899999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 009192 271 KLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYV 350 (540)
Q Consensus 271 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~ 350 (540)
+.++|.+++++.+...+.+++.+++++| ++++|+++++.++..+.+++..+++++..+.++|++|++|++++++..+.
T Consensus 240 ~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~ 317 (464)
T PRK00187 240 RLGLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRV 317 (464)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccC--cH---hHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHH
Q 009192 351 SLGVALVSGCVGALTMVGARGVWGPLFSH--DK---GIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANV 425 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 425 (540)
++.++++.+++++++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||++.+++.++
T Consensus 318 ~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~ 397 (464)
T PRK00187 318 GIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGL 397 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHH
Confidence 99999999999999999999999999964 44 67889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 426 GGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 426 ~~~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
++.|++++|+.+++.+.+++|+.|+|+++.+++.+..+.....++.
T Consensus 398 ~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 398 ACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888999999999999999998777665533
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.3e-49 Score=404.71 Aligned_cols=437 Identities=25% Similarity=0.340 Sum_probs=399.5
Q ss_pred chhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC
Q 009192 35 IMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGA 114 (540)
Q Consensus 35 ~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~ 114 (540)
+.+..++.+|+++++++|.+++++...+...+|..+++++|++++++++++.++..+. ..+..|++.+..+.++|++|+
T Consensus 3 ~~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~ 81 (456)
T PRK01766 3 ETQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGA 81 (456)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 3455678899999999999999999999999999999999999999999999987775 778899999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 009192 115 KNFRLLHKTLLMAILLLLLATVPITF-FWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITL 193 (540)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (540)
+|+++.++.++.++.+.++++++.++ ++.+.++++.+++.|+++.+.+.+|+++.+++.++..+...+.+++|+.|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~ 161 (456)
T PRK01766 82 GRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTK 161 (456)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 99999999999999999999988774 47778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHH
Q 009192 194 PIMFTSALSLAFHVPVNILLV------KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWL 267 (540)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~li------~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (540)
.+++.++++.++|++++++++ +.+|+.|+++|+.+++++..++..++.+++++.+....++ ++.+++++.+|
T Consensus 162 ~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k 239 (456)
T PRK01766 162 PTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFK--GLYKPDWAVIK 239 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhc--cccCCCHHHHH
Confidence 999999999999999999988 3689999999999999999998887775543221100122 22234578899
Q ss_pred HhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 009192 268 RLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRS 347 (540)
Q Consensus 268 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~ 347 (540)
++++.++|..+++..+...+..++.+++++| ++++|+++++.++.++.+++..+++.+..+.+++++|++|++++++.
T Consensus 240 ~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~ 317 (456)
T PRK01766 240 RLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQY 317 (456)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999999999999999999999998 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHH
Q 009192 348 AYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGG 427 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 427 (540)
.+.++.+++.++++.+++++.+++++.++|++|+++.+.+..++++..+..++.+++....++++|.||++.+++.++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~ 397 (456)
T PRK01766 318 AYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIA 397 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHccHHH
Q 009192 428 FYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDD 476 (540)
Q Consensus 428 ~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 476 (540)
.|++.+|+.+++.+.+++|+.|+|+++.+++.+..++.++++++.+|+.
T Consensus 398 ~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 398 YWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9899999999998888899999999999999999998888887776554
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.8e-48 Score=394.69 Aligned_cols=423 Identities=17% Similarity=0.171 Sum_probs=386.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChh
Q 009192 40 LSELKEQQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFR 118 (540)
Q Consensus 40 ~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~ 118 (540)
++..|++++.++|.+++++...+.+.+|+.+++| +|++++++++++.++..+. ..+..+++.+..++++|++|++|++
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4578999999999999999999999999999999 5999999999999999886 7788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 009192 119 LLHKTLLMAILLLLLATVPIT-FFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMF 197 (540)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (540)
++++..+.++.+..+++++.. +++.+.++++.+++.|++..+.+.+|+++..++.++..+.....+++|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 999999999999999998887 4578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhh
Q 009192 198 TSALSLAFHVPVNILLV--KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGP 275 (540)
Q Consensus 198 ~~~~~~~~~i~~~~~li--~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 275 (540)
.++.+.++|++++++++ +++|+.|+++|+++++.+..++..+++++++. ..+++.+ .+ +++++.+|++++.|.|
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~-~~~~~~~--~~-~~~~~~~~~il~ig~P 242 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRA-NIRLTLK--EL-RFNWSLAPKIVLLGSS 242 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCc-eeEEeec--cC-CcCHHHHHHHHHhChh
Confidence 99999999999999998 57999999999999999999888777654332 2211222 22 3457889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 009192 276 CCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVA 355 (540)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 355 (540)
..+++..........+.+.+++|+ ++++|+++++.++..+.+++..|++++..|.+|+++|+||+|++++..+.++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~ 321 (453)
T PRK09575 243 SFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVT 321 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 999999998898899999999884 4689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccC-cHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhh
Q 009192 356 LVSGCVGALTMVGARGVWGPLFSH-DKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALP 434 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~ 434 (540)
+..+++.+++++.+++++.++|++ |+|+.+.+.+++++.+++.++++++.+..+++||.||++.++..++.. +++++|
T Consensus 322 ~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip 400 (453)
T PRK09575 322 VLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLP 400 (453)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHH
Confidence 999999999999999999999995 789999999999999999999999999999999999999999999876 478999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 435 VCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 435 ~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
+.+++... +|+.|+|+++.+++.+..++..+++++
T Consensus 401 ~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 401 FLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99988754 599999999999999988887766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1e-47 Score=388.34 Aligned_cols=423 Identities=20% Similarity=0.183 Sum_probs=370.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChh
Q 009192 40 LSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRL-GELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFR 118 (540)
Q Consensus 40 ~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~l-g~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~ 118 (540)
+++.|+++++++|.++++++..+.+++|+.+++|+ |++++++++++.++..+. ..+..+++.+..++++|++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999999999997 677999999999999986 8889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 009192 119 LLHKTLLMAILLLLLATVPITFF-WLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMF 197 (540)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (540)
++++..++++.++.+++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+..++.+++|+.|+++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888744 77788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhh
Q 009192 198 TSALSLAFHVPVNILLV--KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGP 275 (540)
Q Consensus 198 ~~~~~~~~~i~~~~~li--~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 275 (540)
.++++.++|++++++++ .++|+.|+++|+.+++.+..++..++++++++.+. .+++ .++...++.+|++++.|.|
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~il~ig~P 240 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRG-ISLE--MLKTAWRGNFRRLLALNRD 240 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccHH--HhhhhhHHHHHHHHHhCch
Confidence 99999999999999998 57899999999999999998887777755332221 0111 1211113478999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 009192 276 CCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVA 355 (540)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 355 (540)
..+++......+.+.+.+++++| ++++|+|+++.++.++.+++..|++++.+|.+++++|+||++++|+..+.+.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~ 318 (441)
T PRK10367 241 IMLRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQS 318 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 5799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCc---chhhHHHHHHHHHHhh
Q 009192 356 LVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTAR---PWLAMHANVGGFYLLA 432 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~ 432 (540)
.+.+.+++++++.+++++..+|++|+|+.+.+..++++.++..+..++..+..+++++.+| ++.++.+++++.|+..
T Consensus 319 ~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~ 398 (441)
T PRK10367 319 GIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTL 398 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764433345455555666655 9999999999876422
Q ss_pred hhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHccHHH
Q 009192 433 LPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDD 476 (540)
Q Consensus 433 l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 476 (540)
++. +.+|+.|+|++..+++.+..++..+++++. |++
T Consensus 399 ~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 399 LTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 221 236999999999999999999887766554 754
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=3.5e-40 Score=329.84 Aligned_cols=442 Identities=36% Similarity=0.564 Sum_probs=423.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChh
Q 009192 39 TLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFR 118 (540)
Q Consensus 39 ~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~ 118 (540)
.+.+.|++++++.|.++..+.+.....+++.++||+|+.++++.+++....+...+.+..|+..+..++++|++|.++++
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence 36889999999999999999999999999999999999999999999999998788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 009192 119 LLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFT 198 (540)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (540)
....+.+++..+....+++...++.+.++++..+++|+++...+..|.++..+..+..........++|++++..+..+.
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhh
Q 009192 199 SALSLAFHVPVNILLV--KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPC 276 (540)
Q Consensus 199 ~~~~~~~~i~~~~~li--~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 276 (540)
.....++++.++++++ +++|..|++++..+++.+.......|..... ... .|. .++.. ++.++++++.++|.
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~--~w~--~~s~~-~~~~~~~~~lai~s 256 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLA--AWS--GFSGE-FDSWGPFFALAIPS 256 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chh--hhh--hhhHh-hhhHHHHHHHhhcc
Confidence 9999999999999999 8999999999999999999999999986554 444 777 67666 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 009192 277 CLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVAL 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~ 356 (540)
.++.++++|.+.+..+..+.++++..++++.++..++....++.+.+++.+...++++.+|+++++++|.........++
T Consensus 257 ~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~ 336 (473)
T KOG1347|consen 257 AVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSV 336 (473)
T ss_pred hheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhhHH
Q 009192 357 VSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVC 436 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~ 436 (540)
..+...+..+...++.+..+|++|+|+.+...+..++++...++++.+.+..++.+|.|.+++..+.++.++++.++|.+
T Consensus 337 ~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g 416 (473)
T KOG1347|consen 337 AIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVG 416 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Q 009192 437 VVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGKAQILAC 486 (540)
Q Consensus 437 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (540)
..+.+..++|..|+|.++..+..+..........+.+|++...++.++..
T Consensus 417 ~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~ 466 (473)
T KOG1347|consen 417 LYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARII 466 (473)
T ss_pred eEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHH
Confidence 99998889999999999999988888888889999999999999887763
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=3.4e-35 Score=305.79 Aligned_cols=413 Identities=13% Similarity=0.084 Sum_probs=350.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHH-HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhhcCCChhHHHH
Q 009192 46 QQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHL-AGGALAFTFANVTGFSVL-NGLCGAMDPICGQAYGAKNFRLLHK 122 (540)
Q Consensus 46 l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~-a~~~~~~~i~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~ 122 (540)
+.|.+.-..++++++.+.+++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ ++.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688889999999999999999999999 999999 899999999876523333 468888777776654332 57777
Q ss_pred HHHHHHHHHHHHHHH-HH-HHHHhHHHHHHHc--CCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 009192 123 TLLMAILLLLLATVP-IT-FFWLNVDKILIHF--GQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFT 198 (540)
Q Consensus 123 ~~~~~~~~~~~~~~~-~~-~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (540)
.+..++......+.+ .. +.+.+++++..++ +.+++..+.+.+|++++.++.++..+..+..+++|+.+|++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777766666655543 34 4467788888877 4577778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcchHH--HHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhh
Q 009192 199 SALSLAFHVPVNILLVKARGIEGIA--MAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPC 276 (540)
Q Consensus 199 ~~~~~~~~i~~~~~li~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 276 (540)
+++..++++...+++..++|..|++ ++++++..+..++.+++.++++ .+.++++ ++ +++..|++++++.|.
T Consensus 160 ~i~~~i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~---~~---~~~~~k~~l~~~~p~ 232 (502)
T TIGR01695 160 PILFNIGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAG-FLLKPRF---NF---RDPGLKRFLKLFLPT 232 (502)
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCcC---CC---CChhHHHHHHHHHHH
Confidence 9999888887666666889999998 9999999999888777664433 2221111 12 267889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 009192 277 CLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYS-VMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVA 355 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~-~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 355 (540)
.+++....+...++..+.+.++ ..++++|+.+.++.+++.. +..+++++..|.+++++|++|++++++..++..++.
T Consensus 233 ~~~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~ 310 (502)
T TIGR01695 233 TLGSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLS 310 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999998877766 5689999999999998765 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccC----cHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHh
Q 009192 356 LVSGCVGALTMVGARGVWGPLFSH----DKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLL 431 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 431 (540)
..+++++++++..+++++..+|.+ |+|..+.+..++++++++.++.+++.+..+.+++.||++.+++.++.+. ++
T Consensus 311 ~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i 389 (502)
T TIGR01695 311 LLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VL 389 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HH
Confidence 999999999999999999999876 5577888999999999999999999999999999999999999999985 78
Q ss_pred hhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192 432 ALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARI 472 (540)
Q Consensus 432 ~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (540)
++++.+++... +|..|+|+++.+++.+...+..++.+|+
T Consensus 390 ~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 390 NALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88988888654 6999999999999999988887777665
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=8.7e-35 Score=301.78 Aligned_cols=415 Identities=16% Similarity=0.184 Sum_probs=347.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChhHHHHHHH
Q 009192 47 QRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLL 125 (540)
Q Consensus 47 ~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~ 125 (540)
.|.+.|.+++++...+.+++|..+++| +|++++|+++.+.++..+.......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999998886344457999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009192 126 MAILLLLLATVPITFF-WLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLA 204 (540)
Q Consensus 126 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (540)
.++.+..+.+++.+++ +.+.+++...++.+++. ..++++..+..++..+.....+++|+.+|++..+..+++..+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888744 66677777666666543 346788889999999999999999999999999999999998
Q ss_pred HHHHHHHHHH-------hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhhH
Q 009192 205 FHVPVNILLV-------KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCC 277 (540)
Q Consensus 205 ~~i~~~~~li-------~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (540)
+++.++..++ .+.|+.|+++++.++..+..++.+++.+++++.+.+..+. +..+.+++.+|+++++++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~l~~~~~p~~ 235 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFF--DYKSEGKALLFDLFSVSLPLT 235 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--ccCcchHHHHHHHHHHHHHHH
Confidence 8877655554 2456778889999999999888776664443322211221 222344678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-----hh---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 009192 278 LTTCLEWWCYEILVLLSGRLAN-----AK---QAVGVI-VIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSA 348 (540)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~a~~-~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~ 348 (540)
++++...+....|+.++++... .. ..++.| +++.++..++..+..+++++..|.+++++|++|.++.++..
T Consensus 236 l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~ 315 (488)
T TIGR02900 236 LSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRI 315 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999888765321 01 223333 46677888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHH
Q 009192 349 YVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGF 428 (540)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 428 (540)
++..+++...++++++.+..+++++..+|.++++ +..+++++++..++..++.+..+++++.||+|..++.++++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 391 (488)
T TIGR02900 316 NQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA 391 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 9999999999999999999999999999876543 578899999999999999999999999999999999999986
Q ss_pred HHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192 429 YLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARI 472 (540)
Q Consensus 429 ~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (540)
++++++.+++...+.+|+.|+|+++.+++.+..++..+..+|.
T Consensus 392 -i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 392 -IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred -HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888877644568999999999999999998888877653
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.3e-34 Score=284.43 Aligned_cols=336 Identities=29% Similarity=0.406 Sum_probs=305.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 009192 52 PLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLL 131 (540)
Q Consensus 52 p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 131 (540)
|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.++++.|++|+++.++..+.++.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999988876 78899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 009192 132 LLATVPIT-FFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVN 210 (540)
Q Consensus 132 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 210 (540)
.+++++.+ +++.+.+++..+++.|++..+.+..++++..+..++.++.....+++|+.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 99998888 45788999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-h---cCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhhHHHHHHHHHH
Q 009192 211 ILLVK-A---RGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWC 286 (540)
Q Consensus 211 ~~li~-~---~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 286 (540)
++++. . +|+.|+++++.+++++..++..++.+++++.+. +|+ +..+.+++.+|+++++++|.+++++..++.
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~ 235 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGL--KWE--GLLKPDWEVLKRLLKLGLPIAFRVILESLS 235 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--ccc--cccCCCHHHHHHHHHhCchHHHHHHHHHHH
Confidence 88875 4 559999999999999999888777755333332 332 222334788999999999999999999999
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009192 287 YEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTM 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
..+++.+++.++ +.++++|+++.++.++..+++.+++++..|.++++++++|.++.++..+++.++.+.+++++++++
T Consensus 236 ~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 313 (342)
T TIGR00797 236 FALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIIL 313 (342)
T ss_pred HHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccccCcHhHHHHHHHHHHHH
Q 009192 367 VGARGVWGPLFSHDKGIIRGVKKALLLM 394 (540)
Q Consensus 367 ~~~~~~i~~l~~~~~~~~~~~~~~l~i~ 394 (540)
.++++++.++|++|+++.+.+..++++.
T Consensus 314 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 314 ILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=4e-32 Score=275.06 Aligned_cols=404 Identities=14% Similarity=0.054 Sum_probs=340.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChhHHHHHH
Q 009192 46 QQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTL 124 (540)
Q Consensus 46 l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~ 124 (540)
++|.+.....+++...+.+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788888999999999999999999999 99999999999999888775555888989989999988 78889999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009192 125 LMAILLLLLATVPIT-FFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSL 203 (540)
Q Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (540)
+.++.+....+++.+ +++.+.+++...++.+++. ..++.+..+..++..+.....+.+|+.++++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887 4578888988877766652 24566666666677888899999999999999999999999
Q ss_pred HHHHHHHHHHH-hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhhHHHHHH
Q 009192 204 AFHVPVNILLV-KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCL 282 (540)
Q Consensus 204 ~~~i~~~~~li-~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 282 (540)
++|+.+ +++. ...|+.|+++|+++++.+..+...++++++++.+. +.. ++ +.+++.+|+++++|.|..+++..
T Consensus 157 ~~~i~l-~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~--~~~--~~-~~~~~~~k~ll~~g~p~~~~~~~ 230 (416)
T PRK15099 157 LIGVAA-YYLCYRLGGYEGALLGLALVPALVVLPAGIMLIRRGTIPL--SYL--KP-SWDNGLAGQLGKFTLMALITSVT 230 (416)
T ss_pred HHHHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHccceeh--Hhh--hc-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444 34499999999999999988777666654433211 111 11 22378899999999999999999
Q ss_pred HHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 009192 283 EWWCYEILVLLSG-RLANAKQAVGVIVIVLNFDCL-LYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGC 360 (540)
Q Consensus 283 ~~~~~~~~~~~~~-~~~~~~~~~a~~~v~~~i~~l-~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~ 360 (540)
..+....++.+++ .+| ++++|+|+++.++.+. ...+..+++++.+|.++++ +|.++.++..++...+....++
T Consensus 231 ~~i~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~ 305 (416)
T PRK15099 231 LPVAYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVA 305 (416)
T ss_pred HHHHHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 766 6799999999999874 5789999999999999995 6789999999999999999999
Q ss_pred HHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhhHHHHHH
Q 009192 361 VGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLA 440 (540)
Q Consensus 361 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~ 440 (540)
++++++.++++++..++.+|+ ++.+.+++++++++.++...+......+.+.++++......+.. .++.+|+.+++.
T Consensus 306 ~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li 382 (416)
T PRK15099 306 AASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI 382 (416)
T ss_pred HHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999999875 56678899999999999888888777777888888777777775 478889998887
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 441 FKAALGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 441 ~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
.. +|..|+++++.+++.+...+..+...+
T Consensus 383 ~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 383 PL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 699999999999999998877765554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.98 E-value=1.6e-27 Score=241.55 Aligned_cols=386 Identities=17% Similarity=0.152 Sum_probs=337.5
Q ss_pred hChh-HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHH
Q 009192 74 LGEL-HLAGGALAFTFANVTGFSVL-NGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPIT-FFWLNVDKILI 150 (540)
Q Consensus 74 lg~~-~~a~~~~~~~i~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~ 150 (540)
+|.. +..+|.++.++..++...+. .+++++..|..++.. ++++++.++..+..+.+..+++++++ +.+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7754 56689999999998744444 468999999999998 88999999999998888888887777 44888999998
Q ss_pred Hc--CCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhcC---cchHHHH
Q 009192 151 HF--GQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARG---IEGIAMA 225 (540)
Q Consensus 151 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~g---~~g~a~a 225 (540)
++ +.+++..+.+.+++++..+..++.++..++.+++|+++|+..+....++.++..++..+++....| +.+.+++
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~~~~~i~~la~g 163 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNSWGQENIYALAWG 163 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 88 557888999999999999999999999999999999999999999999998887776666667777 8899999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHH
Q 009192 226 IWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVG 305 (540)
Q Consensus 226 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 305 (540)
.+++.++..++.+...++.+ .+.+++++ ++ .+..|++++...|..+.....++...+++.+++.++. ..++
T Consensus 164 ~~~g~~~~~l~~l~~~~~~~-~~~~~~~~---~~---~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs 234 (451)
T PF03023_consen 164 VLIGAIIQFLIQLPYLRRFG-FRFRPKFD---WR---DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVS 234 (451)
T ss_pred HHHHHHHHHHHHHHHHHHCC-CcccccCC---CC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHH
Confidence 99999999988888875543 32211222 22 5678999999999999999999999999999999984 5899
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----Cc
Q 009192 306 VIVIVLNFDCLLY-SVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFS----HD 380 (540)
Q Consensus 306 ~~~v~~~i~~l~~-~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~ 380 (540)
+++.++++.+++. .+..+++++..|.+++...++|.++.++..++.++....+.+|+++.++.+++++++++. -|
T Consensus 235 ~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~ 314 (451)
T PF03023_consen 235 ALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFT 314 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCC
Confidence 9999999999987 567799999999999999999999999999999999999999999999999999988874 25
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHH
Q 009192 381 KGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVA 460 (540)
Q Consensus 381 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~ 460 (540)
.|..+....++.+++++.++.+++..+...+++.||+|.+++.++++. ++++.+.+++... +|..|+.+++.++..+
T Consensus 315 ~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i 391 (451)
T PF03023_consen 315 AEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAII 391 (451)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999999999999999999999985 8888888777654 6999999999999999
Q ss_pred HHHHHHHHHHHc
Q 009192 461 CLALLLTFIARI 472 (540)
Q Consensus 461 ~~~~~~~~~~~~ 472 (540)
..++.++.++|+
T Consensus 392 ~~~~l~~~l~r~ 403 (451)
T PF03023_consen 392 SALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHH
Confidence 999998888776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=6.3e-26 Score=225.18 Aligned_cols=417 Identities=14% Similarity=0.066 Sum_probs=349.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChh-HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhhcCCChhHH
Q 009192 44 KEQQRLALPLVVMNLTWFAKLTITTAFLGR-LGEL-HLAGGALAFTFANVTGFSVLNG-LCGAMDPICGQAYGAKNFRLL 120 (540)
Q Consensus 44 ~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~-~~a~~~~~~~i~~~~~~~~~~g-l~~a~~~~~s~~~g~~~~~~~ 120 (540)
+.++|.+.-....++++.+.+++...+++. +|.. ...++.++.++.+++-..+..| ++++..|...++..+++.++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 456666677777788888888999999999 9974 5669999999999875555544 799999999999988878888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 009192 121 HKTLLMAILLLLLATVPITFF-WLNVDKILIHF-GQ--QEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIM 196 (540)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (540)
++..+........+.+..+++ .++.+.+.... +. |++....+....+++.+..++..+.....+.+++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 887777776666666666644 66777777344 33 233333688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-hhcC-cchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhh
Q 009192 197 FTSALSLAFHVPVNILLV-KARG-IEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCG 274 (540)
Q Consensus 197 ~~~~~~~~~~i~~~~~li-~~~g-~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (540)
...++.++..+.....+. ...+ ..+.+|+++++.+.+.++.++.+++.+ ...+++| +++ .+..|++.+.-.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g-~~~~p~~---~~~---~~~lk~~~~~~~ 239 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAG-LLIKPRF---GFK---DPGLKRFLKLML 239 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccCCCC---CCC---chhHHHHHHHHH
Confidence 999999988886666555 2233 668899999999999999999996655 3221233 232 478999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 009192 275 PCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLY-SVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLG 353 (540)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~-~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~ 353 (540)
|..+.....++...+++.+++.+.+ -.++.++.+.++.+++. .+..+++++..|.+|++..++|.++.++..+++++
T Consensus 240 p~~l~~sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~ 317 (518)
T COG0728 240 PALLGVSISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLR 317 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 9999999999999999999999974 47899999999999998 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccC----cHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHH
Q 009192 354 VALVSGCVGALTMVGARGVWGPLFSH----DKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFY 429 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 429 (540)
++++..+|.++.+..+++++..++.. +++........+..+.++.++..+..++...+++.+|+|.++++.+++.
T Consensus 318 l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~- 396 (518)
T COG0728 318 LTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL- 396 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-
Confidence 99999999999999999999888632 3444678889999999999999999999999999999999999999985
Q ss_pred HhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192 430 LLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARI 472 (540)
Q Consensus 430 ~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (540)
++++.+++++... +|..|++.+..++..+...+.++.++|+
T Consensus 397 ~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 397 VVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8898888666644 6888999999999888888888877776
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=1.5e-25 Score=232.30 Aligned_cols=397 Identities=11% Similarity=0.084 Sum_probs=317.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChhHHH
Q 009192 43 LKEQQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLH 121 (540)
Q Consensus 43 ~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~ 121 (540)
.++..+.+.+..++++...+.+++...+++| +|++++|.++.+..+..+.......|++++... . +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~----~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQ----R---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHh----c---ccCC--H
Confidence 3668888999999999999999999999999 999999999999999998766667888776532 1 1111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 009192 122 KTLLMAILLLLLATVPITFF-WLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSA 200 (540)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (540)
+.....+.+....+++++++ +.+.+++...++ +++. ...+++..+..++..+.......++..++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455556666666666544 445555555444 4432 34677788888888888899999999999999999988
Q ss_pred HHHHHHHHHHHHHH-hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhhHHH
Q 009192 201 LSLAFHVPVNILLV-KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLT 279 (540)
Q Consensus 201 ~~~~~~i~~~~~li-~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 279 (540)
+..+...++..++. .++|..+.+++.+++..+..+...... +++ .+. .+ +++ ++..|++++++.|...+
T Consensus 150 ~~~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~-~~~--~~---~~~---~~~~k~ll~~~~~~~~~ 219 (492)
T PRK10459 150 SAVVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLLFGYFG-RKI-YRP--AL---HFS---LASVKPNLSFGAWQTAE 219 (492)
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHh-ccc-CCc--cc---eec---HHHHHHHHhhhHHHHHH
Confidence 88887777766655 788899999999999888776543332 222 222 11 222 56789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 009192 280 TCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYS-VMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVS 358 (540)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~-~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (540)
++...+....|..+++.+.+ ++++|.|+.+.++.+++.. +...+++...|.+++. ++|.++.++..++..++...+
T Consensus 220 ~~~~~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~ 296 (492)
T PRK10459 220 RIINYLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGII 296 (492)
T ss_pred HHHHHHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887754 6899999999999987654 5555788899999885 678899999999999999999
Q ss_pred HHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhhHHHH
Q 009192 359 GCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVV 438 (540)
Q Consensus 359 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~ 438 (540)
++|+++.+.+.++++..++.+++ +..+...++++++..++..+..+...++++.||+|..++.+++.. ++.+|..+.
T Consensus 297 ~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~ 373 (492)
T PRK10459 297 NFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVI 373 (492)
T ss_pred HHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHH
Confidence 99999999999999998887765 677899999999999999999999999999999999999998875 677777666
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 439 LAFKAALGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 439 l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
+... +|+.|+++++.+++.+...+..+..+|
T Consensus 374 ~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 374 GGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 699999999999999988888776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.94 E-value=4.5e-23 Score=213.40 Aligned_cols=390 Identities=19% Similarity=0.153 Sum_probs=310.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChhH
Q 009192 41 SELKEQQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRL 119 (540)
Q Consensus 41 ~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 119 (540)
...+++.|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|+..+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 356788999999999999999999999999999 9999999999999999998666679999999999998876655555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 009192 120 LHKT-LLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFT 198 (540)
Q Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (540)
.... ...........+++......+..+. ++ .....+++..+..++........+.+|+.++++.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5554 4444444444444433332222221 12 23345678889999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhhHH
Q 009192 199 SALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCL 278 (540)
Q Consensus 199 ~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 278 (540)
.+.. ..-+.....+ ......+..++..++..........+..+.++...+..++ ..++..|+.+++++|...
T Consensus 153 ~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~p~~~ 224 (480)
T COG2244 153 IVSS-IFLLAAVFAL-LFAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILR------FSLALLKELLRFGLPLLL 224 (480)
T ss_pred HHHH-HHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC------chhHHHHHHHHHhhHHHH
Confidence 4444 1112222222 2234556777777777776666666654222221100111 137899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 009192 279 TTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVS 358 (540)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (540)
......+....|.++++.+.+ ++++|.|+.+.++......+..+++.+..|.+++.+.++|.++.++..++..++...+
T Consensus 225 ~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (480)
T COG2244 225 SSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLI 303 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhhHHHH
Q 009192 359 GCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVV 438 (540)
Q Consensus 359 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~ 438 (540)
+++..+.+..+++++..++.+++ +..+...+.++++..++.++.......+++.|+++...+.+.++. +.++.+.++
T Consensus 304 ~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~ 380 (480)
T COG2244 304 SIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLL 380 (480)
T ss_pred HHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhH
Confidence 99999999999999999887765 444899999999999999999999999999999999999999986 778888877
Q ss_pred HHHHhCCCchhHHHHH
Q 009192 439 LAFKAALGLAGLLIGF 454 (540)
Q Consensus 439 l~~~~~~g~~g~~~a~ 454 (540)
+... +|..|+..+.
T Consensus 381 li~~--~g~~g~~~a~ 394 (480)
T COG2244 381 LIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHh--hhhhhHHHHH
Confidence 7644 5888888888
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.87 E-value=2.2e-20 Score=189.23 Aligned_cols=208 Identities=22% Similarity=0.216 Sum_probs=200.4
Q ss_pred HhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 009192 263 VSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPR 342 (540)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~ 342 (540)
++..|+++++++|.++.++.......+|+.++++++ ++++|+-+++.++..+.+.+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 668999999999999999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHH
Q 009192 343 LAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMH 422 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 422 (540)
++++..++++.++++++++..++...+++++..++..++|+.+.+.+|+++..++.++..+.....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHH-hC-CCchhHHHHHHHHHHHHHHHHHHHHHHcc
Q 009192 423 ANVGGFYLLALPVCVVLAFK-AA-LGLAGLLIGFFIGMVACLALLLTFIARIN 473 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 473 (540)
.++++. ++|+.+.+++.+. ++ +|+.|+++|+.+++.+..++..+++.+++
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999986 9999999999988 56 99999999999999999999988888765
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=2.7e-20 Score=188.59 Aligned_cols=207 Identities=16% Similarity=0.144 Sum_probs=193.7
Q ss_pred HhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 009192 263 VSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPR 342 (540)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~ 342 (540)
++..|+++++++|..++++.......+|+.+++++++ ++++|+.+++.++..+...+..+++.+..+.++|++|++|++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 5668999999999999999999999999999999853 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHH
Q 009192 343 LAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMH 422 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 422 (540)
++++..+.++.++++.+++..++...+.+++..+++.|+|+.+.+.+|+++..++.++..+.....+++++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 423 ANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
.++++. ++++++.+++.+.+++|+.|+++|+.+++.+..++..+++.+
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999985 889999999988888999999999999999988777666654
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=2.6e-20 Score=190.59 Aligned_cols=205 Identities=17% Similarity=0.147 Sum_probs=191.3
Q ss_pred HhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 009192 263 VSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPR 342 (540)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~ 342 (540)
.+..|+++++++|.+++++.......+|+.+++++| ++++|+++++.++..+.+.+..+++++..+.+++++|++|++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 566999999999999999999999999999999998 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc--CcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhh
Q 009192 343 LAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFS--HDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLA 420 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 420 (540)
++++..+.++.+++.++++.+++.+.+++++..+|. .|+|+.+.+..|+++..++.++..+.....+++++.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 009192 421 MHANVGGFYLLALPVCVVLAFK----AALGLAGLLIGFFIGMVACLALLLTFIA 470 (540)
Q Consensus 421 ~~~~~~~~~~~~l~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 470 (540)
++.++++ +++++++.+++.+. +++|+.|+|+|+.+++.+..++..+++.
T Consensus 183 ~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986 48899999988864 3789999999999999998877665554
No 19
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.87 E-value=3.7e-20 Score=189.36 Aligned_cols=206 Identities=18% Similarity=0.121 Sum_probs=189.0
Q ss_pred HhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 009192 263 VSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPR 342 (540)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~ 342 (540)
++..|++++.++|.++.++...+....|+.+++++| ++++|+++++.++..+..++..+++++..+.++|++|++|++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 778999999999999999999999999999999998 679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHH
Q 009192 343 LAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMH 422 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 422 (540)
++++..+.++.++++++++..+++. +.+++..+|+.|+|+.+.+.+|+++..++.++..+.....+++++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877766 568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192 423 ANVGGFYLLALPVCVVLAFK----AALGLAGLLIGFFIGMVACLALLLTFIARI 472 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (540)
.++++. ++++++.+++.+. +++|+.|+++|+.+++.+..+...++++++
T Consensus 163 ~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 163 ISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999986 7799999988754 258999999999999888776665555543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.86 E-value=8.4e-20 Score=186.50 Aligned_cols=206 Identities=13% Similarity=0.052 Sum_probs=194.2
Q ss_pred HhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 009192 263 VSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRL-ANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRP 341 (540)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~ 341 (540)
++..|++++.++|..++++...+...+|+.+++++ | ++++++++++.++..+...+..+++.+..+.+++++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 56789999999999999999999999999999996 6 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhH
Q 009192 342 RLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAM 421 (540)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 421 (540)
|++++..+.++.++++.++++++++..+++++..+++.|+++.+.+.+++++..++.++..+.....+++++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 422 HANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
+.++.+. ++++++.+++.+.+++|+.|+++++.+++.+..++..+++.+
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999985 899999999988888999999999999999998887666554
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.85 E-value=2.4e-19 Score=184.00 Aligned_cols=207 Identities=15% Similarity=0.096 Sum_probs=193.0
Q ss_pred HhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 009192 263 VSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPR 342 (540)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~ 342 (540)
++.+|+++++++|..++++...+...+|..+++++| ++++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 678999999999999999999999999999999997 578999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHH
Q 009192 343 LAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMH 422 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 422 (540)
++++..+.++.+++++++++++++..+++++..+++.|+++.+.+..++++.+++.++..+.....+++++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192 423 ANVGGFYLLALPVCVVLAFK----AALGLAGLLIGFFIGMVACLALLLTFIARI 472 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (540)
.++++. ++++++.+++.+. +++|+.|+++++.+++.+..++..++++++
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999986 7899998888753 357999999999999999998887777654
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=5.1e-17 Score=169.36 Aligned_cols=232 Identities=20% Similarity=0.106 Sum_probs=198.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChh
Q 009192 39 TLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFR 118 (540)
Q Consensus 39 ~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~ 118 (540)
+++..|++++.+.|..++++...+...+|+.+.+++|++++++|+.+.++..+....+..+++++..|.++++.|++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45678999999999999999999999999988555999999999999999987634467899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC----ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 009192 119 LLHKTLLMAILLLLLATVPITF-FWLNVDKILIHFGQ----QEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITL 193 (540)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (540)
+.++.++++..+...++++.++ +..+++++..++.+ |++..+.+..++++++++.++..+.....+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 9999999999999999998884 57889999988854 567788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhh
Q 009192 194 PIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLC 273 (540)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (540)
.+++.++...++++++++++++.+|..|+++|+.+++.+..++..++.+++... . .. .+..+++.|..
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~-~-------~~----~~~~~~~~~~~ 445 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLKG-I-------LP----FGVLKVLAKLV 445 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc-C-------Cc----hHHHHHHHHHH
Confidence 999999999999999999999889999999999999999998887777443211 1 11 34556666666
Q ss_pred hhhHHHHHH
Q 009192 274 GPCCLTTCL 282 (540)
Q Consensus 274 ~p~~~~~~~ 282 (540)
.+..++...
T Consensus 446 ~as~~m~~~ 454 (502)
T TIGR01695 446 IASAIIGGV 454 (502)
T ss_pred HHHHHHHHH
Confidence 655555444
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.76 E-value=6.6e-15 Score=140.52 Aligned_cols=271 Identities=20% Similarity=0.211 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChhHHHHHH
Q 009192 46 QQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTL 124 (540)
Q Consensus 46 l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~ 124 (540)
++|.+.....+++...+.+++...+++| +|++++|.++....+..++......|++++..+.+++...+ .++.+.+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3577888899999999999999999999 99999999999999999875666899999999999887432 34444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009192 125 LMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLA 204 (540)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (540)
........+.+++..+..... ..++.++. . ..+........++.........++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIA----SFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444443333322221 13333321 1 122222222225778888899999999999999999999988
Q ss_pred HHHHHHHHHH-hhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhhHHHHHHH
Q 009192 205 FHVPVNILLV-KARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLE 283 (540)
Q Consensus 205 ~~i~~~~~li-~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 283 (540)
...++..++. ...+..+..++..++.++..++...+.+++.+ . +++ . .+++..|++++.+.|.++..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~--~---~~~~~~~~~~~~~~~~~~~~~~~ 221 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKLR--P--RFS--F---FSKKFFKEILRFGLPLFLSSLLS 221 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c--ccc--c---cchHHHHHHHHHHHHHHHHHHHH
Confidence 8887776666 44458899999999999988888777754432 2 222 2 22788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009192 284 WWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNEL 336 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~ 336 (540)
.+....|..+++.+.+ .+++|.|+++.++......+..++.++..|.+++.+
T Consensus 222 ~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 222 WLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999998865 689999999999999999999999999999998753
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.75 E-value=3.2e-16 Score=154.88 Aligned_cols=194 Identities=21% Similarity=0.212 Sum_probs=178.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 009192 275 PCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGV 354 (540)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~ 354 (540)
|.++.++...+...+++.++++++ ++++++++++.++..+...+..+++++..|.+++++|++|++++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678888999999999999999998 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhh
Q 009192 355 ALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALP 434 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~ 434 (540)
..+.+++.+++++++++++..+++.|++..+.+..++++++++.++.++.....+++++.||.+...+.++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999986 77888
Q ss_pred HHHHHHH-HhC-CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 435 VCVVLAF-KAA-LGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 435 ~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
+.+++.. .++ +|+.|+++++.++..+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887776 556 789999999999999998887776665
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.74 E-value=3.6e-18 Score=149.32 Aligned_cols=162 Identities=23% Similarity=0.332 Sum_probs=157.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 009192 275 PCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGV 354 (540)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~ 354 (540)
|..++++...+.+.+++.+++++| ++++++++++.++.++..++..+++++..+.+++++|++|++++++..+.+..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999996 689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhh
Q 009192 355 ALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALP 434 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~ 434 (540)
+.+++++.++++..+++++..+|++|+|+.+.+.+++++..++.++.++.....+++++.||++..++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 009192 435 VCVV 438 (540)
Q Consensus 435 ~~~~ 438 (540)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.73 E-value=9.6e-15 Score=148.37 Aligned_cols=207 Identities=20% Similarity=0.187 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChh
Q 009192 39 TLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFR 118 (540)
Q Consensus 39 ~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~ 118 (540)
..+..|++++...|..++.....+..++|+.+.+++++.++++++.+.++..++...+..++++...|..++...++|.+
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~ 272 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE 272 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34568999999999999999999999999999999999999999999999999866778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcC----CChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 009192 119 LLHKTLLMAILLLLLATVPIT-FFWLNVDKILIHFG----QQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITL 193 (540)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (540)
+.++.+++++.....+.++++ .++.+++++++++. .+.+..+.....+++++++.|+..+..++...+.+.+|+|
T Consensus 273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~ 352 (451)
T PF03023_consen 273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK 352 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence 999999999999999999998 45888999997763 3677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 009192 194 PIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTE 245 (540)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~ 245 (540)
.++..++++.++|++++.++.+.+|..|.++|+.++..+..++.+++.+|+.
T Consensus 353 ~~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 353 TPVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998888875543
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.71 E-value=3.5e-15 Score=155.06 Aligned_cols=202 Identities=19% Similarity=0.185 Sum_probs=174.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCh------h---HHHHH-HHHHHHHHHHHHHHHHHHHhhHH
Q 009192 37 HTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGR-LGE------L---HLAGG-ALAFTFANVTGFSVLNGLCGAMD 105 (540)
Q Consensus 37 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~------~---~~a~~-~~~~~i~~~~~~~~~~gl~~a~~ 105 (540)
+.+++.+|++++++.|..++++...+...+|+.++++ +++ + .+|.+ +.+.++..+. ..+..+++.+..
T Consensus 218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~ 296 (488)
T TIGR02900 218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALV 296 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHH
Confidence 3456789999999999999999999999999999988 532 1 22322 3455666665 667889999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 009192 106 PICGQAYGAKNFRLLHKTLLMAILLLLLATVPITF-FWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKS 184 (540)
Q Consensus 106 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (540)
|.++++.|++|.++.++..++.+.+...++++.++ +..++++++.++..++ .+..+++++++..++..+.....+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988874 5778899998886543 356789999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHH--hhcCcchHHHHHHHHHHHHHHHHHHHHHh
Q 009192 185 YLSSQGITLPIMFTSALSLAFHVPVNILLV--KARGIEGIAMAIWISDLLVVILLALYLLV 243 (540)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~li--~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 243 (540)
.+++.||++..++.+++..+++++++++++ +.+|+.|+++++++++++..++..++.++
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 89999999999999999999888777744
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.71 E-value=1.2e-13 Score=137.93 Aligned_cols=237 Identities=19% Similarity=0.112 Sum_probs=203.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCh
Q 009192 38 TTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNF 117 (540)
Q Consensus 38 ~~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~ 117 (540)
.+.+..|++.+...|..++...+++..++|+.+-+.+.+.+.+.+..+.++..++.-.+..++++...|..|++..++|.
T Consensus 226 ~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~ 305 (518)
T COG0728 226 FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW 305 (518)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 33468999999999999999999999999999999999999999999999999986688999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcC----CChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCh
Q 009192 118 RLLHKTLLMAILLLLLATVPIT-FFWLNVDKILIHFG----QQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGIT 192 (540)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (540)
++.++..+.++.+++++.++.+ .+..+++|+...+. .+++....+.+.+..++++.++..+..++...+++.+++
T Consensus 306 ~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ 385 (518)
T COG0728 306 PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDT 385 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999 55888999997762 255667788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHh
Q 009192 193 LPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKL 272 (540)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (540)
|.++.+.++..++|+.+++.+.+.+|..|.++++.++.++...++++..+++..... . ..+..+. ..|.
T Consensus 386 ktP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~---~-------~~~~~~~-~~k~ 454 (518)
T COG0728 386 KTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP---G-------RGWGLFL-ILKL 454 (518)
T ss_pred CcChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---c-------chhhHHH-HHHH
Confidence 999999999999999999888899999999999999999998888887755443221 1 1144444 5566
Q ss_pred hhhhHHHHHHHHH
Q 009192 273 CGPCCLTTCLEWW 285 (540)
Q Consensus 273 ~~p~~~~~~~~~~ 285 (540)
.+-..++....+.
T Consensus 455 ~l~~~i~~~~~~~ 467 (518)
T COG0728 455 LLASAIMAAALLA 467 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 6555555554433
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.69 E-value=1.6e-17 Score=145.18 Aligned_cols=160 Identities=26% Similarity=0.412 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 009192 52 PLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLL 131 (540)
Q Consensus 52 p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 131 (540)
|..+++++..+...+++.+++++|++++++++++.++..+. ..+..|+++|..+.++|++|++|++++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHH
Q 009192 132 LLATVPITFF-WLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSL-AFHVPV 209 (540)
Q Consensus 132 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 209 (540)
.+++++.+++ +.+.+++..+++.|+++.+.+.+|+++..++.++..+.....+++++.||++..++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999855 88899999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred HHH
Q 009192 210 NIL 212 (540)
Q Consensus 210 ~~~ 212 (540)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 875
No 30
>PRK15099 O-antigen translocase; Provisional
Probab=99.68 E-value=2.6e-14 Score=144.94 Aligned_cols=201 Identities=10% Similarity=0.047 Sum_probs=175.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC
Q 009192 37 HTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAK 115 (540)
Q Consensus 37 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~ 115 (540)
+.+++..|++++++.|..++++...+...+|+.++++ +|++++|.|+.+.++...+...+..+++++..|.++++ +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 4567889999999999999999999999999999985 99999999999999977443678999999999999995 5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH
Q 009192 116 NFRLLHKTLLMAILLLLLATVPITF-FWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLP 194 (540)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (540)
|.++.++..+........++++.++ +++++++++.++.+++ ++.+.+++++++++.++...+..+...+.+.++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999988888888774 4688999999987654 445677899999999888888877777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHH
Q 009192 195 IMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLL 242 (540)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 242 (540)
.....+...++++++++++++.+|..|+++++.+++.+......+...
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999999987776554
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.66 E-value=4.7e-13 Score=139.02 Aligned_cols=199 Identities=17% Similarity=0.211 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCh
Q 009192 39 TLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNF 117 (540)
Q Consensus 39 ~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~ 117 (540)
+++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++..++...+...++....|..++. ++|.
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 45678999999999999999999999999999999 89999999999999988764455556777888988886 6788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 009192 118 RLLHKTLLMAILLLLLATVPITF-FWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIM 196 (540)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (540)
++.++.+.+.......+++++++ +..++++++.++.+++ +..+...++++++...+..+.......+++.||++...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 89999999999999999998874 5778899987775544 56788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHH
Q 009192 197 FTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYL 241 (540)
Q Consensus 197 ~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~ 241 (540)
..+++..++.++..+.+...+|+.|+++++.+++.+......++.
T Consensus 358 ~~~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888777888999999999999999888777766
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.58 E-value=8.2e-12 Score=117.53 Aligned_cols=246 Identities=20% Similarity=0.224 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 62 AKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITF 140 (540)
Q Consensus 62 ~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (540)
..+++...+++| +|++++|.|+....+..+.......|+.+.... ..++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 999999999999999998755456777766554 23456667777776666555554444433
Q ss_pred HHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH-hhcCc
Q 009192 141 FWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLV-KARGI 219 (540)
Q Consensus 141 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li-~~~g~ 219 (540)
+. ..+...+ .+++ ...++....+..++..+.....+.+++.+|.+.....+....++...+..++. ...+.
T Consensus 77 ~~---~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (251)
T PF13440_consen 77 LA---ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNL 148 (251)
T ss_pred HH---HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 21 1111233 3332 22355667777888899999999999999999999999999887754444444 44578
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCc
Q 009192 220 EGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLAN 299 (540)
Q Consensus 220 ~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 299 (540)
.+..++..++.++..++.+...+ ++.+. + . +.+..| .++.+.|..+.++..+.....+..+++.+-+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~---~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~ 215 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLR--RKLRL----S---F---KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG 215 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cccCC----C---c---hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888887766555332 11111 1 1 123334 7999999999999999999999999998333
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 009192 300 AKQAVGVIVIVLNFDCLLY-SVMLSLATCTSTRVSN 334 (540)
Q Consensus 300 ~~~~~a~~~v~~~i~~l~~-~~~~~i~~a~~~~vs~ 334 (540)
.+++|.|+++.++..... .+..++++...|.+++
T Consensus 216 -~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 216 -PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 789999999999999888 9999999999999886
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=1.7e-12 Score=134.52 Aligned_cols=187 Identities=28% Similarity=0.328 Sum_probs=172.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCh
Q 009192 39 TLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNF 117 (540)
Q Consensus 39 ~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~ 117 (540)
.++..|++++.+.|..++++...+.+.+|+.++++ +|++++|.|+.+.++.... ..+...++....|.+++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46789999999999999999999999999999999 9999999999888888886 888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 009192 118 RLLHKTLLMAILLLLLATVPITF-FWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIM 196 (540)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (540)
++.++..++.+.+...++++..+ +..++++++..+.+++ +..+...+.++++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999885 4788889988775554 23377889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHH
Q 009192 197 FTSALSLAFHVPVNILLVKARGIEGIAMAIWIS 229 (540)
Q Consensus 197 ~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~ 229 (540)
..+.++.++++++++++++.+|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhHHHHH-HH
Confidence 999999999999999999999999999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.24 E-value=3.9e-08 Score=100.92 Aligned_cols=421 Identities=16% Similarity=0.061 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhcCCChhHHHHHHH
Q 009192 48 RLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVT-GFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLL 125 (540)
Q Consensus 48 ~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~-~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~ 125 (540)
+.+.-.++.+++..+.+++-+.++-| ++++.+|..++-..+..-. .+..=.++..|+.+.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45666788888888888888888877 9999988886544444321 133457777776654443322223333333333
Q ss_pred HHHHHHHHHHHHHHHHHH--hH--HHH--HHHc-CCChh---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----cCC
Q 009192 126 MAILLLLLATVPITFFWL--NV--DKI--LIHF-GQQED---ISAVSKRYLFYLLPSLLVTSLLSPLKSYLSS----QGI 191 (540)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~--~~--~~i--~~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~----~~~ 191 (540)
....+..++++++..+.+ .. ..+ ..+. ...++ ..+.....+.+...+...-.+...+....|. .-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333333333332221111 00 111 1111 11111 1122223334444444444444444333344 344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-hhcC--c-----ch-HHHHHHHHHHHHHHHHHHHHHhhcccc-CC--CcccCCCCC
Q 009192 192 TLPIMFTSALSLAFHVPVNILLV-KARG--I-----EG-IAMAIWISDLLVVILLALYLLVTECYG-KE--GKWKEGGWW 259 (540)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~li-~~~g--~-----~g-~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~ 259 (540)
.+.-........+.+..+..... .++| . .+ +.++..++++...+............. .. ...+ +..
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp--~i~ 242 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLP--KIS 242 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccc--ccc
Confidence 44444444554555544444332 2211 1 11 234455565555443332221111111 10 0111 111
Q ss_pred h---hhHhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 009192 260 E---QGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGR--LANAKQAVGVIVIVLNFDCLLY-SVMLSLATCTSTRVS 333 (540)
Q Consensus 260 ~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~v~~~i~~l~~-~~~~~i~~a~~~~vs 333 (540)
. .....-++.++.....+...+.-.+..+-+.+++.. +.+ .++.|.|++++++.+++- .+.+.+..+.....+
T Consensus 243 ~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fs 321 (549)
T PF04506_consen 243 SGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFS 321 (549)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHH
Confidence 1 011124678888888888888888888888888887 655 678999999999998764 678889999999999
Q ss_pred HhhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHH
Q 009192 334 NELGANRP---------RLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPL 404 (540)
Q Consensus 334 ~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 404 (540)
+....++. +++.+.....+++...+++.+..+....++.+.+++.+++-....+...++.+++..++.+++
T Consensus 322 k~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~N 401 (549)
T PF04506_consen 322 KLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAIN 401 (549)
T ss_pred HHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHc
Confidence 88876543 334455666666666666666665556666666776554333334688999999999999999
Q ss_pred HHHhHHhhccCcchhhHHHHHHH--HHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192 405 TVCGGIVRGTARPWLAMHANVGG--FYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARI 472 (540)
Q Consensus 405 ~~~~~~l~~~g~~~~~~~~~~~~--~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (540)
.+...+.++...++.....+-.- ..++.+..++++... ++|..|+.+|.++.+.++.+....++++.
T Consensus 402 Gi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 402 GITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987776554443221 124556677777765 68999999999999999999988877664
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.20 E-value=9.2e-10 Score=111.21 Aligned_cols=206 Identities=16% Similarity=0.113 Sum_probs=188.2
Q ss_pred HhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 009192 263 VSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCL-LYSVMLSLATCTSTRVSNELGANRP 341 (540)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l-~~~~~~~i~~a~~~~vs~~~g~~~~ 341 (540)
+.+.|++++++.|..+....+.....+...+++++| +.++++.+++++..+. -+.+..++..+..+..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 678899999999999999999999999999999999 4699999999998887 4668889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhH
Q 009192 342 RLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAM 421 (540)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 421 (540)
+.......++.......+++...+.. +.+++...+..|+++...+..+.++.....+.+.....+...+|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999998888888888776664 55889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192 422 HANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARI 472 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (540)
++..... ++.+++.+++.+.+++|..|+..+..+++.+.......+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999985 8999999999999999999999999999999888777666553
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.2e-06 Score=83.96 Aligned_cols=420 Identities=16% Similarity=0.055 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhcCCChhH
Q 009192 42 ELKEQQRLALPLVVMNLTWFAKLTITTAFLGR-LGELHLAGGALAFTFANVT-GFSVLNGLCGAMDPICGQAYGAKNFRL 119 (540)
Q Consensus 42 ~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~a~~~~~~~i~~~~-~~~~~~gl~~a~~~~~s~~~g~~~~~~ 119 (540)
....-.+.+.-.+..++...+.+++-+.++-| ++++.+|..++-..+..-. .+..-.++.-|..+.-++. +++..+
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 34455555666667777777776666666666 9999999887766554421 0222344544433332221 122335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChh-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 009192 120 LHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQED-ISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFT 198 (540)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (540)
..+..+.+.-+..++++++.-+++ .+... .|+. ..+.-...+.+...+...-.+...+.-..|...+.+.-.+.
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl---~~~~s--~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWL---GFLSS--SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHH---HHhhc--cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 444445454555554444432211 11110 1111 11222233444444555555555555666666666777777
Q ss_pred HHHHHHHHHHHHHHHH----hhcCcchHHHHHHHHHHHHHHHHHHHHHhhcc-ccC-CC------cccCCCCChhhHhhH
Q 009192 199 SALSLAFHVPVNILLV----KARGIEGIAMAIWISDLLVVILLALYLLVTEC-YGK-EG------KWKEGGWWEQGVSDW 266 (540)
Q Consensus 199 ~~~~~~~~i~~~~~li----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~-~~------~~~~~~~~~~~~~~~ 266 (540)
..+..++.....+... ..+++..-|+|.........++.++++.+.++ .+. ++ -++...........=
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 7776666533332222 55666677777777766666645555544443 000 00 000000000000011
Q ss_pred HHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHH
Q 009192 267 LRLLKLCGPCCLTTCLEWWCYEILVLLSGRLAN-AKQAVGVIVIVLNFDCLLY-SVMLSLATCTSTRVSNELGANRPRLA 344 (540)
Q Consensus 267 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~v~~~i~~l~~-~~~~~i~~a~~~~vs~~~g~~~~~~~ 344 (540)
++..+.-.......+.-.+...-+..++..... .-.+.|.|.++++.-++.. ++...+........++....++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 233333333333344433344434444332211 0236789999999887664 67788888888888888888777777
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhH
Q 009192 345 YRSAY---VSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAM 421 (540)
Q Consensus 345 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 421 (540)
|+... ..++....+++.++......++.+..++++++-....+...++++++..++.+++.+..+++++.+..+-..
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 76554 444444455555554445555566677765432223356899999999999999999999999877655443
Q ss_pred HH---HHHHHHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 422 HA---NVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 422 ~~---~~~~~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
.- .++. -++.+.+++++... +|..|...|-++.+.++.+....++++
T Consensus 399 ~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2222 25667788998877 488999999999998888777666554
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.03 E-value=1.4e-06 Score=80.13 Aligned_cols=313 Identities=15% Similarity=0.106 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCh---hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCC
Q 009192 40 LSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGE---LHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKN 116 (540)
Q Consensus 40 ~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~---~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~ 116 (540)
...+++++++-.|+.+++++..+...+.+.-++|-.+ +.+|+|+++..+.-++ ..+...+-+....++ .++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cch
Confidence 3568899999999999999999999999999987322 4589999999999887 666666655544444 333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HH-hHHHHH-HHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 009192 117 FRLLHKTLLMAILLLLLATVPITFF-WL-NVDKIL-IHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITL 193 (540)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (540)
+++.+... .......+..++..++ +. +...++ ..++.++++.+.+...+.++.+..++.++...+++++.-.+++.
T Consensus 81 rsrr~~vl-~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRRKAVL-CMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 22222222 1122222222221222 22 233333 56688999999999999999999999999999999999777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hh----cCcchHHHHHHHHHHHHHHH-HHHHHHhhccccCCCcccCCCCChhhHhhHH
Q 009192 194 PIMFTSALSLAFHVPVNILLV-KA----RGIEGIAMAIWISDLLVVIL-LALYLLVTECYGKEGKWKEGGWWEQGVSDWL 267 (540)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~li-~~----~g~~g~a~a~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (540)
.....++...+..+++..+++ .. -+..--.++...+..+.+-+ ...|+..-..... ... +.++.+...++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p--~~~--~~~~~~~~tl~ 235 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIP--QLS--GLEKGDSATLQ 235 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccC--CcccCCChhHH
Confidence 777777766666666555555 11 11111112333333222222 1222211111111 222 34444567899
Q ss_pred HhHHhhhhhHHHHHHHHHHHHHHHHHHhc-CCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 009192 268 RLLKLCGPCCLTTCLEWWCYEILVLLSGR-LANA---KQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRL 343 (540)
Q Consensus 268 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~ 343 (540)
+++++.+|.+.....+...-.+.+.++++ +++. ++++|+..+.+.+.-..+....-+ .+..|..-.. ++.++
T Consensus 236 ~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~---~~~~~ 311 (345)
T PF07260_consen 236 RMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKN---NPQNK 311 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhcc---Ccccc
Confidence 99999999999999999999999999998 4432 356666666555554444333222 2233332211 22222
Q ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHH
Q 009192 344 A--------YRSAYVSLGVALVSGCVGALTMV 367 (540)
Q Consensus 344 ~--------~~~~~~~~~~~~~~~~~~~~~~~ 367 (540)
. +...++....++++++..+..++
T Consensus 312 ~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 312 LRNCGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 22455666666666666665543
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.54 E-value=1.3e-05 Score=68.18 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=73.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 009192 166 LFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVT 244 (540)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 244 (540)
+++++++.++.++.....+.+++.||++.....++++.++|+++++++++.+|..|+++|+.+++.+...+..++.+|+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999999999999999999999999988888777543
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.26 E-value=9.8e-05 Score=76.22 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCh--
Q 009192 43 LKEQQRLALPLVVMNLTWFAKLTITTAFLGR---LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNF-- 117 (540)
Q Consensus 43 ~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~---lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~-- 117 (540)
-+++++........++.-.+.+--|..++.. .+.++-|.|+++..+-++++-.+...+-.+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3677888888899999999999999999988 46789999999999999998999999999999999988765533
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 009192 118 -------RLLHKTLLMAILLLLLATVPITFF-WLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQ 189 (540)
Q Consensus 118 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 189 (540)
++..+.+...+.+...+++++..+ ...++.++.+++++.-....+...+++.+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 345666777777777788776644 666777777775543333445778999999999999999999999998
Q ss_pred CChhHHHHHH---HHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHHHHHHHHHHHHHh
Q 009192 190 GITLPIMFTS---ALSLAFHVPVNILLVK-ARGIEGIAMAIWISDLLVVILLALYLLV 243 (540)
Q Consensus 190 ~~~~~~~~~~---~~~~~~~i~~~~~li~-~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 243 (540)
...+-....+ .+..++.+..++++.. .+|..|..+|.++.+.+..+..+.++++
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776655444 4446666777888887 5999999999999999999998888854
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.004 Score=60.59 Aligned_cols=202 Identities=10% Similarity=0.008 Sum_probs=146.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-hChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 009192 37 HTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLG--R-LGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYG 113 (540)
Q Consensus 37 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~--~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g 113 (540)
..+++..|-..++ ....+.-.+.+=-|..++. . +.-.+-|.|.+...+-++.+-.+...+-...-...+|...
T Consensus 236 ffd~d~~~~~~s~----~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls 311 (530)
T KOG2864|consen 236 FFDNDLLKLTKSF----TFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLS 311 (530)
T ss_pred cccHHHHHHHHHH----HHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhh
Confidence 3445555544444 4445555555555666665 2 4556778899998888888888889999999999999888
Q ss_pred CCChhHHHHHH---HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 009192 114 AKNFRLLHKTL---LMAILLLLLATVPITFF-WLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQ 189 (540)
Q Consensus 114 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 189 (540)
+++.|+.++.. ...+.....+++.++.+ ...++.++.+++++.-....+...+++.+..+|+.+++.+..+++.+.
T Consensus 312 ~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~ 391 (530)
T KOG2864|consen 312 RDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAV 391 (530)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 77777666554 44555555556555533 555677777776644334445678999999999999999999999988
Q ss_pred CChhHHH---HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHH
Q 009192 190 GITLPIM---FTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLL 242 (540)
Q Consensus 190 ~~~~~~~---~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 242 (540)
...+-.- ..+.+..+..++.+++++..+|..|..+|.++.+.+..+....+++
T Consensus 392 ~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 392 ATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred ccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554 3455557777889999999999999999999998888877766664
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.95 E-value=0.0021 Score=60.92 Aligned_cols=186 Identities=20% Similarity=0.200 Sum_probs=111.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 009192 272 LCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSV-MLSLATCTSTRVSNELGANRPRLAYRSAYV 350 (540)
Q Consensus 272 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~-~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~ 350 (540)
-+......+............++.+.-+ +++.|.|+.+..+.++...+ ..|+.++..-.+++...+ .+..++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~ 80 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSS 80 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHH
Confidence 3344444455544444444555554433 68999999999999888765 778888888777776443 2333333333
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHH
Q 009192 351 SLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYL 430 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 430 (540)
......+.++.+........ .+. +++. ...+........++.........++++.++.+.....++... +
T Consensus 81 ~~~~~~~~~~i~~~~~~~~~-----~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 150 (273)
T PF01943_consen 81 VLFLLLIFSLIFLLILLIAS-----FFG-NPSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-L 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HcC-CchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 33333333333333332222 333 3321 122222222222577888888999999999999999888875 4
Q ss_pred hhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 431 LALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 431 ~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
..+.+...+... +.+..+..++..++..+...+..++.+|
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333 2357888888888888887777776664
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.87 E-value=0.0037 Score=58.14 Aligned_cols=160 Identities=11% Similarity=0.139 Sum_probs=113.0
Q ss_pred HhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 009192 263 VSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRL-ANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRP 341 (540)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~ 341 (540)
....+++.++-+|..++.....+.-.+.|.-+++- .+..+.+|+|+++..+.-++..+...+.+.....+.. +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 56788999999999999999999999999888774 3434569999999999999998888888877766542 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-ccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchh
Q 009192 342 RLAYRSAYVSLGVALVSGCVGALTM-VGARGV-WGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWL 419 (540)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 419 (540)
++ ++........+.+......++- -.+... +..++.-|+++.+.+...+.++.+..+++++.....+++.=.+++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 2222222211111111111111 112222 44666778999999999999999999999999999998886677776
Q ss_pred hHHHHHHHH
Q 009192 420 AMHANVGGF 428 (540)
Q Consensus 420 ~~~~~~~~~ 428 (540)
....++...
T Consensus 161 V~~aSI~~v 169 (345)
T PF07260_consen 161 VGSASIADV 169 (345)
T ss_pred eehHHHHHH
Confidence 666666653
No 43
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.79 E-value=0.00015 Score=61.72 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 009192 391 LLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIA 470 (540)
Q Consensus 391 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 470 (540)
+++++++.++.++......++++.||+|..++.++.+. ++++++.+.+. +++|..|+++++.+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999985 89999999886 4479999999999999999998888887
Q ss_pred Hc
Q 009192 471 RI 472 (540)
Q Consensus 471 ~~ 472 (540)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.71 E-value=0.0095 Score=55.63 Aligned_cols=161 Identities=21% Similarity=0.224 Sum_probs=104.9
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009192 292 LLSGRLANAKQAVGVIVIVLNFDCLLYSV-MLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGAR 370 (540)
Q Consensus 292 ~~~~~~~~~~~~~a~~~v~~~i~~l~~~~-~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
.+...++ +++.|.|+....+..+...+ ..++.+...- ..++|.++.++..+.......+..+++.++.....
T Consensus 10 ~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF13440_consen 10 LLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILIA 82 (251)
T ss_pred HHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455 68899999999999888876 3444444322 23466667777777666655555555444332222
Q ss_pred ccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhhHHHHHHHHhCCCchhH
Q 009192 371 GVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGL 450 (540)
Q Consensus 371 ~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~g~ 450 (540)
. .+ ++++ ...++.+..+..++..+.......+++.+|.+......+... +..+.+...+... +.+..+.
T Consensus 83 ~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 151 (251)
T PF13440_consen 83 Y----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLNLWSI 151 (251)
T ss_pred H----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhHHHH
Confidence 2 33 3332 344666777777888899999999999999999999988875 3333333333332 2377888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009192 451 LIGFFIGMVACLALLLTFIA 470 (540)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~ 470 (540)
.++..++..+..+......+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 152 LLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88888888877766655443
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.32 E-value=0.16 Score=48.47 Aligned_cols=343 Identities=13% Similarity=0.071 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 009192 91 VTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLL 170 (540)
Q Consensus 91 ~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 170 (540)
+++..+..|+....++.+|...=+++.+++...+--...+....+.++..+. -....+.. ..|=....
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v-------f~~~~~~s-----i~yk~l~~ 138 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV-------FFVNNQYS-----IVYKILAC 138 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh-------hhhcCchh-----HHHHHHHH
Confidence 3345567788888889999888777777776666555554444444433211 11112221 11223444
Q ss_pred hhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 009192 171 PSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKE 250 (540)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~ 250 (540)
......+...+...++.+.++.+.....-.++.++.+.+..++. +.++.|..++..++..+.......++.+.-+-+++
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~-~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~ 217 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL-KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Confidence 45566677778888999999999999999999999988887664 66888999999999999888777776543322221
Q ss_pred CcccCCCCChhhHhhHHHhHHhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHH------HHHHHHHHHHHHHHHHH--
Q 009192 251 GKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVG------VIVIVLNFDCLLYSVML-- 322 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------~~~v~~~i~~l~~~~~~-- 322 (540)
. .++ .-...+--....+-....++...+++++.-..+++++..+ -|.+..-...+...|..
T Consensus 218 ---i--~Fd------FL~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vv 286 (467)
T COG4267 218 ---I--GFD------FLLYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVV 286 (467)
T ss_pred ---c--cee------hhhhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhhe
Confidence 1 222 1111122223344445556667777777555443322111 23333333333333322
Q ss_pred ---HHHHHHHHHHHHhhcC-----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHH
Q 009192 323 ---SLATCTSTRVSNELGA-----------NRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVK 388 (540)
Q Consensus 323 ---~i~~a~~~~vs~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 388 (540)
.+.+..++.--+.+.+ ++.++.....++.+.-..-+-..+++.++++++.+...+.-++ ...
T Consensus 287 F~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l 362 (467)
T COG4267 287 FLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYL 362 (467)
T ss_pred eeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHH
Confidence 2334444433332221 2233344445555555666667777888888888888776543 245
Q ss_pred HHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 009192 389 KALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALL 465 (540)
Q Consensus 389 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~ 465 (540)
+.+++-.++..++..-..+..+.--..+-+.....+..- ...+-.+.++.. ++|...-..+...+..+...+.
T Consensus 363 ~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l---~lgp~~~g~gff~a~fl~vlv~ 435 (467)
T COG4267 363 DLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFL---ELGPGYYGVGFFLASFLYVLVA 435 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHH---HhCccceehHHHHHHHHHHHHH
Confidence 555665666555555555444444454555554444332 233434444333 2343333344445555444443
No 46
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=76.94 E-value=78 Score=31.03 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHH
Q 009192 420 AMHANVGGFYLLALPVCVVLAFK 442 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~l~~~ 442 (540)
...-.+....++..|+..+..-.
T Consensus 194 ~~~~~l~~~~li~~Pl~li~la~ 216 (340)
T PF12794_consen 194 HRLRYLWWPLLILAPLALIVLAL 216 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445566666555433
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=76.27 E-value=82 Score=30.94 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHH
Q 009192 320 VMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEA 399 (540)
Q Consensus 320 ~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~ 399 (540)
++.+++....-.+|.-+=++|.+++.....-...+....+..++.++ .+.+++ . +..+-...+...+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v---------f~~~~~--~--si~yk~l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV---------FFVNNQ--Y--SIVYKILACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh---------hhhcCc--h--hHHHHHHHHHHHH
Confidence 44455555555666666666666666665555554444444444211 112222 1 2222233444455
Q ss_pred hhhHHHHHhHHhhccCcchhhHHHHHHHHHHhhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009192 400 LNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIAR 471 (540)
Q Consensus 400 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (540)
..+..-+....+.+++|.+.....-.++. ++.+.++.++-.. +..|..++.-+|..+...+...+..|
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~~---~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLKS---PIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh---HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55666667788889999998888888874 6777777666544 88999999999998877766655544
No 48
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=74.06 E-value=21 Score=35.73 Aligned_cols=14 Identities=0% Similarity=-0.244 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 009192 353 GVALVSGCVGALTM 366 (540)
Q Consensus 353 ~~~~~~~~~~~~~~ 366 (540)
++.+-+.+|+.++-
T Consensus 35 ~lv~~~~lP~liF~ 48 (385)
T PF03547_consen 35 KLVFNVFLPALIFS 48 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455544443
No 49
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=72.09 E-value=1.2e+02 Score=31.05 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hC--hhHHHHHHHHHHHHHHH
Q 009192 42 ELKEQQRLALPLVVMNLTWFAKLTITTAFLGR-LG--ELHLAGGALAFTFANVT 92 (540)
Q Consensus 42 ~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg--~~~~a~~~~~~~i~~~~ 92 (540)
..|+-+.++.+-+..++...+....-..+-.. .| +...|..=...++...+
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi 63 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI 63 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 47888889999888888888777777777766 55 33344444444555544
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=64.48 E-value=43 Score=24.87 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 009192 325 ATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALT 365 (540)
Q Consensus 325 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
+...+..+-..+.+||++++++..+++..++.+..+...+.
T Consensus 37 Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~ 77 (82)
T PF04505_consen 37 AIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGIVI 77 (82)
T ss_pred HheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445667888899999999999999888776555544333
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=60.84 E-value=1.9e+02 Score=29.01 Aligned_cols=37 Identities=8% Similarity=-0.235 Sum_probs=30.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 009192 339 NRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGP 375 (540)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 375 (540)
.+.++.+++.+++...+.+......+++....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999988888888777666655
No 52
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=55.42 E-value=2.4e+02 Score=28.69 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009192 292 LLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARG 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
+++..++++-.-++.|+....+..+ ...|.+++...++++.++-+.....-+.++..+..+...+....+
T Consensus 28 ~L~~i~p~sLl~~siygl~~~~~~~----------~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~ 97 (432)
T PF06963_consen 28 FLISIFPGSLLPVSIYGLVRSLSAI----------LFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPS 97 (432)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH----------HhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3344444334456677766665544 456788899988887777777766666666666655555444333
No 53
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=55.21 E-value=1.2e+02 Score=31.27 Aligned_cols=51 Identities=10% Similarity=-0.090 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHH----HHHHHHHHHHHHHHH
Q 009192 309 IVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLA----YRSAYVSLGVALVSG 359 (540)
Q Consensus 309 v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~----~~~~~~~~~~~~~~~ 359 (540)
....++.+.+.....+.-...|..-.++.++|.+.. ++..+....+..+.+
T Consensus 76 ~~~~~W~~iyw~~~il~w~ilPf~~~y~es~~~~~~~k~l~~~l~~n~~~~~~~~ 130 (471)
T PF04791_consen 76 LMEVLWYIIYWLTFILTWLILPFAQFYYESGDFTPKGKGLKSSLKENLIYYLIFA 130 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHH
Confidence 444567777877777888889999999988887643 444444444444333
No 54
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=52.30 E-value=97 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=15.5
Q ss_pred cccCCCCCCCCcchhhhhhhhhcccc
Q 009192 501 AVVDESVSVPSPTQKELTNIASVVNA 526 (540)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (540)
-..|+++..-++..++.++..+..++
T Consensus 125 ~~LD~NTltl~~l~~e~~~l~~~~~~ 150 (165)
T PF11286_consen 125 YQLDDNTLTLSDLEKEQEQLDEKIAE 150 (165)
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHH
Confidence 34556665556666776666655544
No 55
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=48.26 E-value=2.9e+02 Score=27.52 Aligned_cols=24 Identities=17% Similarity=-0.069 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 009192 339 NRPRLAYRSAYVSLGVALVSGCVG 362 (540)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
-|.++..|..++.+...++-++..
T Consensus 72 ~Dlr~i~~~g~~~l~~F~~~~~g~ 95 (378)
T PF05684_consen 72 ADLRRILRLGGRLLLAFLIGAVGT 95 (378)
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHH
Confidence 366666666666555444443333
No 56
>PRK03612 spermidine synthase; Provisional
Probab=42.46 E-value=4.3e+02 Score=27.75 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHHHH-HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHH
Q 009192 198 TSALS-LAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYL 241 (540)
Q Consensus 198 ~~~~~-~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~~~~ 241 (540)
.+.++ .+-.++..+++++.+|..+..+....-++...+...+..
T Consensus 153 ~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 153 ADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred HHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 455555667777999998877766665655554444443
No 57
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=39.81 E-value=3.2e+02 Score=25.61 Aligned_cols=36 Identities=6% Similarity=-0.010 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 009192 316 LLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVS 351 (540)
Q Consensus 316 l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~ 351 (540)
....+...++.......=++..++|+++.++.....
T Consensus 108 ~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~ 143 (265)
T TIGR00822 108 VLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTA 143 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHH
Confidence 344556666777777777888889999987665443
No 58
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=39.49 E-value=3.2e+02 Score=25.41 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHH
Q 009192 339 NRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLL 393 (540)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i 393 (540)
+..+..++....+..++...++.=++..+.+++ ..++.++.+....+...++.
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~ 161 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWF 161 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHH
Confidence 345556666666666666667777777777776 56666655555444433333
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.26 E-value=43 Score=27.06 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192 448 AGLLIGFFIGMVACLALLLTFIARI 472 (540)
Q Consensus 448 ~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (540)
.|+.+|..++.+...++..++++|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444444444443
No 60
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.29 E-value=4.4e+02 Score=24.92 Aligned_cols=12 Identities=8% Similarity=0.050 Sum_probs=4.7
Q ss_pred HHHhhcCCChhH
Q 009192 108 CGQAYGAKNFRL 119 (540)
Q Consensus 108 ~s~~~g~~~~~~ 119 (540)
.|+.+--.|..+
T Consensus 14 lShEFviqNHaD 25 (374)
T KOG1608|consen 14 LSHEFVIQNHAD 25 (374)
T ss_pred cchhhhhcccch
Confidence 344333334333
No 61
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=31.23 E-value=5.1e+02 Score=25.33 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHH
Q 009192 194 PIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLA 238 (540)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~li~~~g~~g~a~a~~i~~~~~~~~~~ 238 (540)
......++-.++.+..|++.+..+...-..-++.+........+.
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~ 121 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMI 121 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHH
Confidence 334445555788888888888777777777777776555444433
No 62
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=29.01 E-value=1.4e+02 Score=28.91 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHhCCCch--------hHHHHHHHHHHHHHHHHHHHHHHccH
Q 009192 418 WLAMHANVGGFYLLALPVCVVLAFKAALGLA--------GLLIGFFIGMVACLALLLTFIARINW 474 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~--------g~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (540)
+..-..++++ ++.+|+..+-+.+ +++.. ..++......++.++..+++++|++|
T Consensus 256 ~~mk~LTvvt--~IflP~t~IaGiy-GMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 256 EIMKILTVVS--TIFIPLTFIAGIY-GMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHH-hCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444445554 3455655554432 22211 22333444444555667788888887
No 63
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=27.53 E-value=5.1e+02 Score=26.65 Aligned_cols=52 Identities=6% Similarity=-0.200 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 009192 59 TWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQA 111 (540)
Q Consensus 59 ~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~ 111 (540)
...+.+..|...+...+.+.-.++++...-..+++. ...-.-....|+++..
T Consensus 40 ~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~-vf~v~~~i~sPl~gyL 91 (493)
T KOG1330|consen 40 LVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQT-VFIVVFMIASPLFGYL 91 (493)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhH-HHHHHHHHHHHHHHHH
Confidence 344556677777765444444444444444333322 1222222344555554
No 64
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.05 E-value=1.7e+02 Score=28.38 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHH-------hCCCchhHHHHHHHHHHHHHHHHHHHHHHccH
Q 009192 422 HANVGGFYLLALPVCVVLAFK-------AALGLAGLLIGFFIGMVACLALLLTFIARINW 474 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~l~~~-------~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (540)
..++++ .+.+|+.++-+++ |..+-...|+..++..++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
No 65
>PRK01637 hypothetical protein; Reviewed
Probab=25.89 E-value=5.7e+02 Score=24.20 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=5.8
Q ss_pred HHHHHHHhhcCCC
Q 009192 328 TSTRVSNELGANR 340 (540)
Q Consensus 328 ~~~~vs~~~g~~~ 340 (540)
..-.+.+.++.++
T Consensus 112 l~~a~N~i~~~~~ 124 (286)
T PRK01637 112 IDKALNTIWRSKR 124 (286)
T ss_pred HHHHHHHHhCCCC
Confidence 3333444555443
No 66
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=25.60 E-value=8e+02 Score=25.77 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC--hhHHHHHHHHHHHHHH
Q 009192 47 QRLALPLVVMNLTWFAKLTITTAFLGRLG--ELHLAGGALAFTFANV 91 (540)
Q Consensus 47 ~~~~~p~~~~~~~~~~~~~v~~~~l~~lg--~~~~a~~~~~~~i~~~ 91 (540)
..+-.-..++++...+..+....++..++ +..+|....+..+..+
T Consensus 13 r~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~ 59 (524)
T PF05977_consen 13 RRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPIL 59 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888887742 4455666666555544
No 67
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=24.51 E-value=5.6e+02 Score=28.06 Aligned_cols=114 Identities=10% Similarity=0.041 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCh-hHHHHHHHHHHHHHHHHHHHHHHHH-hhH------HHHHHHh
Q 009192 40 LSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGE-LHLAGGALAFTFANVTGFSVLNGLC-GAM------DPICGQA 111 (540)
Q Consensus 40 ~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~-~~~a~~~~~~~i~~~~~~~~~~gl~-~a~------~~~~s~~ 111 (540)
...+..++..-+| .+.+++..+..+=.++++|.-|. ..+...-++-....+. .....+++ +|. .-++|++
T Consensus 111 a~~mGt~mGVyLP-clQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLT-aISmSAIATNGVVpaGGsYfmISRs 188 (1075)
T KOG2082|consen 111 AARMGTLMGVYLP-CLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLT-AISMSAIATNGVVPAGGSYFMISRS 188 (1075)
T ss_pred ccccceeeeeeHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcccCCCeeEEEecc
Confidence 3445566777777 67888888887777777776442 2233222222222221 11111111 111 1245666
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHcCCC
Q 009192 112 YGAKNFRLLHKTLLMAILLLLLATVPIT--FFWLNVDKILIHFGQQ 155 (540)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~ 155 (540)
+|..-...++-.+..+..++...-++.. +++...-|-..+|+.+
T Consensus 189 LGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~ 234 (1075)
T KOG2082|consen 189 LGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAE 234 (1075)
T ss_pred cCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCcc
Confidence 6655555555555555555555544443 3344455666777643
No 68
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.48 E-value=2.6e+02 Score=26.88 Aligned_cols=17 Identities=6% Similarity=0.049 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 009192 229 SDLLVVILLALYLLVTE 245 (540)
Q Consensus 229 ~~~~~~~~~~~~~~~~~ 245 (540)
..++.++..++++++++
T Consensus 300 ~m~~i~~~~~~~fkrk~ 316 (318)
T TIGR00383 300 VMAVIALGPLIYFRRKG 316 (318)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33344444555664443
No 69
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.74 E-value=1.3e+03 Score=27.06 Aligned_cols=25 Identities=4% Similarity=-0.168 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009192 341 PRLAYRSAYVSLGVALVSGCVGALTM 366 (540)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
.+.+++..+ -+.....+.+|+..+.
T Consensus 592 ~~~v~~~~~-~~~~~~~~~~pl~~~~ 616 (1109)
T PRK10929 592 RERVARAMR-YYLLSIGLIVPLIMAL 616 (1109)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344444433 3444444444444433
No 70
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.00 E-value=4.9e+02 Score=23.61 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=31.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChh---------HHHHHHHHHHHHHhhHHHH
Q 009192 115 KNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQED---------ISAVSKRYLFYLLPSLLVT 176 (540)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~ 176 (540)
.+++...+.+..++...+++-++.+++..+..++..+++.+-- ..+....|+++++.++|-.
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~ 211 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYI 211 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHH
Confidence 3455555555555554444444444455566677776653311 1122345555555555543
No 71
>PF15102 TMEM154: TMEM154 protein family
Probab=21.71 E-value=23 Score=29.36 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=12.3
Q ss_pred CCCcchhhhhhhhhccccc
Q 009192 509 VPSPTQKELTNIASVVNAS 527 (540)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~ 527 (540)
+||-..-+.+++-.-.|..
T Consensus 119 tpsvmeiEmeeldkwm~s~ 137 (146)
T PF15102_consen 119 TPSVMEIEMEELDKWMNSM 137 (146)
T ss_pred CcchhhhhHHHHHhHHHhh
Confidence 4777777777766555554
No 72
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=21.24 E-value=8.9e+02 Score=24.71 Aligned_cols=24 Identities=0% Similarity=-0.079 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHccHHHH
Q 009192 454 FFIGMVACLALLLTFIARINWDDE 477 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~ 477 (540)
+.+...+.++..+..+.|..+.+.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~~~~ 203 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPFARY 203 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHH
Confidence 333334444455555666655544
No 73
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=20.47 E-value=7.8e+02 Score=23.79 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHccH
Q 009192 452 IGFFIGMVACLALLLTFIARINW 474 (540)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~ 474 (540)
+..++..++.+++.+++++|++|
T Consensus 299 ~~~l~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 299 PIALILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 34445555666677788888887
No 74
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.21 E-value=1.4e+02 Score=24.09 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 009192 221 GIAMAIWISDLLVVILLALYLLV 243 (540)
Q Consensus 221 g~a~a~~i~~~~~~~~~~~~~~~ 243 (540)
|..++.+++-+...++..++++|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 44455444444433333444433
Done!