Query 009192
Match_columns 540
No_of_seqs 352 out of 2285
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 20:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.3E-47 8E-52 392.0 35.3 431 37-472 5-446 (460)
2 3mkt_A Multi antimicrobial ext 99.8 3.3E-19 1.1E-23 182.4 20.7 205 37-242 231-444 (460)
3 1pw4_A Glycerol-3-phosphate tr 79.0 48 0.0016 32.0 38.0 20 445-464 410-429 (451)
4 4aps_A DI-OR tripeptide H+ sym 47.9 2E+02 0.0069 27.8 28.7 10 330-339 340-349 (491)
5 4ev6_A Magnesium transport pro 34.3 49 0.0017 31.0 5.4 51 420-474 279-338 (339)
6 2knc_B Integrin beta-3; transm 24.2 1.9E+02 0.0065 20.3 5.6 15 447-461 10-24 (79)
7 2jwa_A Receptor tyrosine-prote 23.2 1.3E+02 0.0043 18.5 3.8 12 234-245 28-39 (44)
8 3iyz_A Aquaporin-4; water tran 23.0 69 0.0024 29.9 4.0 11 1-11 1-11 (340)
9 2ks1_B Epidermal growth factor 20.8 1.6E+02 0.0053 18.1 4.4 14 228-241 22-35 (44)
10 2k1k_A Ephrin type-A receptor 18.8 1.1E+02 0.0038 18.0 2.9 16 449-464 15-30 (38)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.3e-47 Score=391.97 Aligned_cols=431 Identities=22% Similarity=0.337 Sum_probs=396.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCC
Q 009192 37 HTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKN 116 (540)
Q Consensus 37 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~ 116 (540)
...++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.+++++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567899999999999999999999999999999999999999999999998875 77889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 009192 117 FRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIM 196 (540)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (540)
+++.++.++.++.+..+++++.++++.+.++++.+++.+++..+.+..|+++..++.++..+.....+++|+.|+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877667788999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh------hcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhH
Q 009192 197 FTSALSLAFHVPVNILLVK------ARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLL 270 (540)
Q Consensus 197 ~~~~~~~~~~i~~~~~li~------~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (540)
..+++..++|++++++++. ++|+.|+++|+++++++..++..++.+++++.+....++ ++.+++++.+|+++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 241 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE--TFHKPQPKELIRLF 241 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC--CCCSSTTSSTTTSH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh--cccccCHHHHHHHH
Confidence 9999999999999999993 699999999999999999998888876554332211122 33344578999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 009192 271 KLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYV 350 (540)
Q Consensus 271 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~ 350 (540)
++++|.+++++...+.+..++.+++.+| ++++|+|+++.++.++..++..+++++..|.+++++|++|.+++++..++
T Consensus 242 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~ 319 (460)
T 3mkt_A 242 RLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANV 319 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999999999999996 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHH
Q 009192 351 SLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYL 430 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 430 (540)
+..+++.+++++++++.++++++..+|++|++..+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 399 (460)
T 3mkt_A 320 GLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWV 399 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999889
Q ss_pred hhhhHHHHHHHH----hC-CCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192 431 LALPVCVVLAFK----AA-LGLAGLLIGFFIGMVACLALLLTFIARI 472 (540)
Q Consensus 431 ~~l~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (540)
+++|+.+++... ++ +|+.|+|+++.+++.+..++..+.++|.
T Consensus 400 ~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 400 LGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877 56 8999999999999999988876666554
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.82 E-value=3.3e-19 Score=182.37 Aligned_cols=205 Identities=14% Similarity=0.184 Sum_probs=190.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCC
Q 009192 37 HTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKN 116 (540)
Q Consensus 37 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~ 116 (540)
+.+++..|++++.+.|..++++...+...+|+.+++++|++++|+|+++.++..+. ..+..+++++..|.+++++|++|
T Consensus 231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~ 309 (460)
T 3mkt_A 231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQD 309 (460)
T ss_dssp SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34456789999999999999999999999999999999999999999999999997 78999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH
Q 009192 117 FRLLHKTLLMAILLLLLATVPIT-FFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPI 195 (540)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (540)
.++.++..+.+..+...++++.+ +++.+++++..++..|++..+.+..++++.+++.++.++..+..+++++.||++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 389 (460)
T 3mkt_A 310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389 (460)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 99999999999999999999888 45888999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhh-------cCcchHHHHHHHHHHHHHHHHHHHHH
Q 009192 196 MFTSALSL-AFHVPVNILLVKA-------RGIEGIAMAIWISDLLVVILLALYLL 242 (540)
Q Consensus 196 ~~~~~~~~-~~~i~~~~~li~~-------~g~~g~a~a~~i~~~~~~~~~~~~~~ 242 (540)
++.++++. ++++++++++.+. +|+.|+++|+.+++++..++..++++
T Consensus 390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~ 444 (460)
T 3mkt_A 390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY 444 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986 9999999999976 99999999999999999887766553
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=78.98 E-value=48 Score=31.96 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=9.7
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 009192 445 LGLAGLLIGFFIGMVACLAL 464 (540)
Q Consensus 445 ~g~~g~~~a~~~~~~~~~~~ 464 (540)
.|....++...+..++..++
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHH
Confidence 46555555544444444333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=47.94 E-value=2e+02 Score=27.84 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=4.6
Q ss_pred HHHHHhhcCC
Q 009192 330 TRVSNELGAN 339 (540)
Q Consensus 330 ~~vs~~~g~~ 339 (540)
..+...++++
T Consensus 340 ~~l~~r~~~r 349 (491)
T 4aps_A 340 AWLWTAWKKN 349 (491)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHhcc
Confidence 3344455544
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=34.26 E-value=49 Score=30.98 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHhCCCc---------hhHHHHHHHHHHHHHHHHHHHHHHccH
Q 009192 420 AMHANVGGFYLLALPVCVVLAFKAALGL---------AGLLIGFFIGMVACLALLLTFIARINW 474 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~l~~~~~~g~---------~g~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (540)
.-..++++ ++.+|+.++-+.+ +++. .|.| ......++.+++.+++++|++|
T Consensus 279 mk~LTiit--~IflP~T~IaGiy-GMNf~~mPel~~~~gy~-~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 279 MKILTMVT--TIFAVPMWITGIY-GMNFSYLPLANNPQGFW-LVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHH--HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHH-HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH--HHHHHHHHHHhhc-cCcCCCCCCccCchHHH-HHHHHHHHHHHHHHHHHHHcCC
Confidence 33445554 3556666655433 2222 2333 4444455566677788888888
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.18 E-value=1.9e+02 Score=20.31 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=6.3
Q ss_pred chhHHHHHHHHHHHH
Q 009192 447 LAGLLIGFFIGMVAC 461 (540)
Q Consensus 447 ~~g~~~a~~~~~~~~ 461 (540)
+.++..+...+.++.
T Consensus 10 ~~~Iv~gvi~gilli 24 (79)
T 2knc_B 10 ILVVLLSVMGAILLI 24 (79)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHH
Confidence 344444444443333
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=23.21 E-value=1.3e+02 Score=18.51 Aligned_cols=12 Identities=0% Similarity=0.199 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhc
Q 009192 234 VILLALYLLVTE 245 (540)
Q Consensus 234 ~~~~~~~~~~~~ 245 (540)
.+....|++|++
T Consensus 28 ~l~~~~~~RRR~ 39 (44)
T 2jwa_A 28 GVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHhheehhh
Confidence 334444554433
No 8
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=22.97 E-value=69 Score=29.87 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=6.4
Q ss_pred CCCCCcccccC
Q 009192 1 MPSATSSFEQN 11 (540)
Q Consensus 1 ~~~~~~~~~~~ 11 (540)
||.+.+-++-.
T Consensus 1 ~~~~~~~~~~~ 11 (340)
T 3iyz_A 1 MPRGSHHHHHH 11 (340)
T ss_pred CCCCccccccc
Confidence 67766655543
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.85 E-value=1.6e+02 Score=18.09 Aligned_cols=14 Identities=21% Similarity=0.467 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 009192 228 ISDLLVVILLALYL 241 (540)
Q Consensus 228 i~~~~~~~~~~~~~ 241 (540)
+...+..+..++++
T Consensus 22 ~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 22 LLLLVVALGIGLFM 35 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333444
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=18.78 E-value=1.1e+02 Score=18.00 Aligned_cols=16 Identities=19% Similarity=0.627 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 009192 449 GLLIGFFIGMVACLAL 464 (540)
Q Consensus 449 g~~~a~~~~~~~~~~~ 464 (540)
|+..+...+-.+...+
T Consensus 15 GiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 15 AVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHH
Confidence 3444444433333333
Done!