Query 009192
Match_columns 540
No_of_seqs 352 out of 2285
Neff 10.3
Searched_HMMs 13730
Date Mon Mar 25 20:54:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009192.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009192hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 63.0 50 0.0036 29.2 37.0 25 444-468 406-430 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 10.6 4.4E+02 0.032 22.1 21.9 29 215-243 405-433 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 7.6 5.3E+02 0.039 20.9 35.5 47 44-90 7-56 (417)
4 d1oeda_ f.36.1.1 (A:) Acetylch 7.3 4.7E+02 0.035 20.0 9.8 14 447-460 63-76 (227)
5 d1nkzb_ f.3.1.1 (B:) Light-har 6.2 2.3E+02 0.017 15.4 4.6 34 340-373 7-40 (41)
6 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.5 7.7E+02 0.056 19.4 9.3 38 330-367 183-220 (290)
7 d1co4a_ g.47.1.1 (A:) Zinc dom 4.3 93 0.0068 17.3 0.2 17 519-535 6-22 (42)
8 d3b60a2 f.37.1.1 (A:10-328) Mu 3.7 8.4E+02 0.062 18.7 21.1 19 303-321 271-289 (319)
9 d2oara1 f.16.1.1 (A:10-118) Ga 3.5 6.1E+02 0.044 17.1 4.1 15 449-463 61-75 (109)
10 d1ppjd2 f.23.11.1 (D:196-241) 3.2 4E+02 0.029 15.0 2.3 15 463-477 21-35 (46)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=63.00 E-value=50 Score=29.20 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q 009192 444 ALGLAGLLIGFFIGMVACLALLLTF 468 (540)
Q Consensus 444 ~~g~~g~~~a~~~~~~~~~~~~~~~ 468 (540)
..|..+.++......++..++.+..
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666555555555444444333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.58 E-value=4.4e+02 Score=22.14 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=16.2
Q ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHh
Q 009192 215 KARGIEGIAMAIWISDLLVVILLALYLLV 243 (540)
Q Consensus 215 ~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 243 (540)
...|..+..+......++..++.+....+
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56676666665555555555554444433
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.61 E-value=5.3e+02 Score=20.88 Aligned_cols=47 Identities=9% Similarity=-0.107 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hC--hhHHHHHHHHHHHHH
Q 009192 44 KEQQRLALPLVVMNLTWFAKLTITTAFLGR-LG--ELHLAGGALAFTFAN 90 (540)
Q Consensus 44 ~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg--~~~~a~~~~~~~i~~ 90 (540)
|+.+.++.-.++..+...........++.+ +| +.++|.......+..
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~ 56 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFS 56 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 455666666666666655554444444544 44 555555544444433
No 4
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.28 E-value=4.7e+02 Score=20.02 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=6.6
Q ss_pred chhHHHHHHHHHHH
Q 009192 447 LAGLLIGFFIGMVA 460 (540)
Q Consensus 447 ~~g~~~a~~~~~~~ 460 (540)
+.|.+++..+....
T Consensus 63 li~~y~~~~~~~v~ 76 (227)
T d1oeda_ 63 LIGKYMLFTMIFVI 76 (227)
T ss_dssp CCTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 44555555544433
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=6.25 E-value=2.3e+02 Score=15.35 Aligned_cols=34 Identities=12% Similarity=-0.084 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009192 340 RPRLAYRSAYVSLGVALVSGCVGALTMVGARGVW 373 (540)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 373 (540)
+.++..+....+.+....+.++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3467788888888888888888777777666654
No 6
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.48 E-value=7.7e+02 Score=19.42 Aligned_cols=38 Identities=8% Similarity=-0.194 Sum_probs=28.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009192 330 TRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMV 367 (540)
Q Consensus 330 ~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (540)
-..++..|+++.+..++...-.++=+.+.+.....+..
T Consensus 183 ~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~ 220 (290)
T d2r6gg1 183 EEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAA 220 (290)
T ss_dssp HHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhh
Confidence 34677888899888888888887777777666555543
No 7
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=4.33 E-value=93 Score=17.30 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=12.1
Q ss_pred hhhhccccccccccccc
Q 009192 519 NIASVVNASINGHRSTA 535 (540)
Q Consensus 519 ~~~~~~~~~~~~~~~~~ 535 (540)
..+-.++.+..+||++-
T Consensus 6 g~KyAC~~CIRGHRsS~ 22 (42)
T d1co4a_ 6 GVKYACDSCIKSHKAAQ 22 (42)
T ss_dssp TEEEEETTTTTTSGGGG
T ss_pred CeeEeHhhhhCcccccc
Confidence 34456788889999874
No 8
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=3.71 E-value=8.4e+02 Score=18.72 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009192 303 AVGVIVIVLNFDCLLYSVM 321 (540)
Q Consensus 303 ~~a~~~v~~~i~~l~~~~~ 321 (540)
.+|..............+.
T Consensus 271 t~g~l~~~~~~~~~~~~pl 289 (319)
T d3b60a2 271 TAGTITVVFSSMIALMRPL 289 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3443333333333333333
No 9
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.46 E-value=6.1e+02 Score=17.12 Aligned_cols=15 Identities=13% Similarity=0.115 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHH
Q 009192 449 GLLIGFFIGMVACLA 463 (540)
Q Consensus 449 g~~~a~~~~~~~~~~ 463 (540)
|.++...+..++.+.
T Consensus 61 G~fi~a~InFlIiA~ 75 (109)
T d2oara1 61 NVLLSAAINFFLIAF 75 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.19 E-value=4e+02 Score=14.95 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=9.0
Q ss_pred HHHHHHHHHccHHHH
Q 009192 463 ALLLTFIARINWDDE 477 (540)
Q Consensus 463 ~~~~~~~~~~~~~~~ 477 (540)
..+.++.+|..|...
T Consensus 21 ~~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 21 LPLVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhc
Confidence 344566667677654
Done!