Query 009193
Match_columns 540
No_of_seqs 162 out of 1189
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 21:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12907 secY preprotein trans 100.0 9E-100 2E-104 811.8 42.7 413 119-533 5-433 (434)
2 COG0201 SecY Preprotein transl 100.0 1.8E-98 4E-103 797.3 38.7 405 119-530 10-430 (436)
3 PRK09204 secY preprotein trans 100.0 3.2E-97 7E-102 792.8 43.3 409 119-530 5-425 (426)
4 CHL00161 secY preprotein trans 100.0 2.7E-96 6E-101 784.1 41.6 409 121-530 4-415 (417)
5 TIGR00967 3a0501s007 preprotei 100.0 1.1E-91 2.4E-96 747.4 42.9 397 128-527 1-410 (410)
6 PRK12417 secY preprotein trans 100.0 5.7E-92 1.2E-96 746.7 39.1 389 120-530 5-401 (404)
7 TIGR02920 acc_sec_Y2 accessory 100.0 5E-87 1.1E-91 708.2 40.6 387 126-530 1-394 (395)
8 PRK08568 preprotein translocas 100.0 4.7E-85 1E-89 704.5 40.3 380 124-530 23-456 (462)
9 PTZ00219 Sec61 alpha subunit; 100.0 1.3E-77 2.9E-82 647.7 38.5 376 120-524 22-469 (474)
10 PF00344 SecY: SecY translocas 100.0 5.9E-74 1.3E-78 599.6 28.1 327 182-516 1-346 (346)
11 KOG1373 Transport protein Sec6 100.0 6E-52 1.3E-56 423.0 31.2 378 123-528 25-471 (476)
12 PF10559 Plug_translocon: Plug 94.4 0.016 3.4E-07 41.6 0.8 33 139-177 1-33 (35)
13 PF07330 DUF1467: Protein of u 45.2 42 0.00091 28.9 4.7 57 423-483 14-70 (85)
14 PF05697 Trigger_N: Bacterial 42.2 52 0.0011 30.2 5.3 31 445-476 37-67 (145)
15 PF04923 Ninjurin: Ninjurin ; 28.2 1.4E+02 0.0031 26.5 5.5 43 190-233 46-89 (104)
16 PF10777 YlaC: Inner membrane 26.0 1.2E+02 0.0025 29.0 4.7 26 196-224 3-28 (155)
17 PF12263 DUF3611: Protein of u 25.2 3.2E+02 0.007 26.8 7.8 45 413-463 60-105 (183)
18 PRK01100 putative accessory ge 23.4 3E+02 0.0066 27.2 7.4 33 503-535 173-207 (210)
19 PRK01490 tig trigger factor; P 22.2 85 0.0018 34.2 3.5 27 441-468 34-60 (435)
20 PF10066 DUF2304: Uncharacteri 22.2 5.6E+02 0.012 22.7 8.4 27 275-301 52-79 (115)
No 1
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=8.9e-100 Score=811.79 Aligned_cols=413 Identities=33% Similarity=0.593 Sum_probs=353.1
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHH
Q 009193 119 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIV 197 (540)
Q Consensus 119 ~~~~~k-~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII 197 (540)
+.++++ +++|+|++||++++++||+|++||+||+|.+++.. .++++++++++.|+||+++++|+|+|||+|||||||+
T Consensus 5 ~~~~~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~-~~~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII 83 (434)
T PRK12907 5 ISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV-QDQANVLGMLNVFGGGALQHFSIFAVGITPYITASII 83 (434)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhh-hhhhhHHHHHHHHhccccccChHHHHccHHHHHHHHH
Confidence 344554 79999999999999999999999999999987652 2234589999999999999999999999999999999
Q ss_pred HHHHhh-hchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccccchhHHHHHHHHHHHHHHH
Q 009193 198 FQLLAQ-INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY-----VNDFSTDWVLTSVTLLTLGSAF 271 (540)
Q Consensus 198 ~QLL~~-~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~-----~~~~~~~~~~~ivl~LvaGs~~ 271 (540)
||||+. .+|++++++| |||+||||+|+||||+|+++|++||+++++.+... ..+.+...+++++++|++|+++
T Consensus 84 ~QLL~~~~~p~l~~l~k-ege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~ 162 (434)
T PRK12907 84 VQLLQMDVIPKFSEWAK-QGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAF 162 (434)
T ss_pred HHHHHhccCccHHHHhh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHH
Confidence 999954 7999999997 89999999999999999999999999988765421 1112223356667899999999
Q ss_pred HHHHhHhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHh-hcCc-----hhHHHHHHHHHHHHHHHhheeeccEEeee
Q 009193 272 TTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGN-----YIGLATIIISFILLVLGIVYVQEAERKIP 345 (540)
Q Consensus 272 l~WL~E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~-~~~~-----~~~~l~~l~~~liiv~~iV~l~~aerrIP 345 (540)
++||||+|||||+|||+|++|++||++++|+.+.+.+.... ..+. ....++++++++++++++||+|++|||||
T Consensus 163 l~WL~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~v~~~~rrIP 242 (434)
T PRK12907 163 LLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIP 242 (434)
T ss_pred HHHHHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHHHHHHHHHhheeeeeEEEE
Confidence 99999999999999999999999999999988876443111 1121 11122333445566788999999999999
Q ss_pred eeeccccccccCCCC-CCcccceeecccCChhHHHHHHhHhhHHHHHHhhChh-HHHHHHHhcCCCCcchHHHHHHHHHH
Q 009193 346 INYASRYTSRSGGLQ-RSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA-ALKKAAVALNPGGSFYLPTNILLIAF 423 (540)
Q Consensus 346 I~y~~r~~g~~~~~~-~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~~-~l~~~~~~~~~~g~~y~~iy~~lii~ 423 (540)
+||++|..|++.+.+ +++|+|+|+|++||||+|||++++++|++++++++++ +..+...++++++++|..+|++++++
T Consensus 243 i~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~ 322 (434)
T PRK12907 243 IQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLIVA 322 (434)
T ss_pred EEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 999999888765554 6789999999999999999999999999999987432 23334455677778899999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccch
Q 009193 424 FNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTS 503 (540)
Q Consensus 424 Fs~fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTs 503 (540)
|+|||+++++||||+||||||+|+||||+||||+|++||+|+++|+|++||+|++++|++|++++.+.+++....+||||
T Consensus 323 Fs~fyt~i~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~~~~~~~~~~gGTs 402 (434)
T PRK12907 323 FTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGGTS 402 (434)
T ss_pred HHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCcccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998777765333489999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCc-ccc
Q 009193 504 VLILVGCATDTARKVQAEIISQKYKNI-EFY 533 (540)
Q Consensus 504 lLI~Vgv~ldt~~qI~a~l~~~~Y~~~-~~~ 533 (540)
+||+|||++||+||+|+++.++||+++ +.+
T Consensus 403 lLI~VgV~ldt~~qi~s~l~~~~Y~~~~~~~ 433 (434)
T PRK12907 403 LLIIVGVALETMKTLESQLVKRHYKGFIKKA 433 (434)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999998 543
No 2
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-98 Score=797.35 Aligned_cols=405 Identities=37% Similarity=0.668 Sum_probs=358.4
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHH
Q 009193 119 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIV 197 (540)
Q Consensus 119 ~~~~~k-~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII 197 (540)
+.+.+| +++|||++||++++++||+|++||+||+|.++..+..+++....++|+|+||+++++|+|+|||+||||||||
T Consensus 10 ~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~PyITASII 89 (436)
T COG0201 10 LSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPYITASII 89 (436)
T ss_pred hcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHHHHHHHH
Confidence 345555 6999999999999999999999999999999887655555555689999999999999999999999999999
Q ss_pred HHHHhhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccccchhHHHHHHHHHHHHHHHH
Q 009193 198 FQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY-----VNDFSTDWVLTSVTLLTLGSAFT 272 (540)
Q Consensus 198 ~QLL~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~-----~~~~~~~~~~~ivl~LvaGs~~l 272 (540)
||||+...|.++|++| |||+||+|+|++|||+|+++|++||.+++..+... ..+.+...+++++++|++|||++
T Consensus 90 ~QLL~~~~p~l~~l~k-~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~Gt~~l 168 (436)
T COG0201 90 MQLLTVGSPILKKLDK-EGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFL 168 (436)
T ss_pred HHHHHHHHHHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHHHHHH
Confidence 9999877999999997 88999999999999999999999999999887521 11223456778899999999999
Q ss_pred HHHhHhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHhhc---CchhHHHHHHHHHHHHHHHhheeeccEEeeeeeec
Q 009193 273 TYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD---GNYIGLATIIISFILLVLGIVYVQEAERKIPINYA 349 (540)
Q Consensus 273 ~WL~E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~~~---~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI~y~ 349 (540)
|||||+|||||+|||+||+|++||++++|..+.+........ .++...++.++.++++++++||+|++||||||||+
T Consensus 169 mwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ii~~vvyve~~~r~IPI~y~ 248 (436)
T COG0201 169 MWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYA 248 (436)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhheEEEeehhhh
Confidence 999999999999999999999999999999887755433221 12222345566677888999999999999999998
Q ss_pred cccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhCh-------hHHHHHHHhcCCCCcchHHHHHHHHH
Q 009193 350 SRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI-------AALKKAAVALNPGGSFYLPTNILLIA 422 (540)
Q Consensus 350 ~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~-------~~l~~~~~~~~~~g~~y~~iy~~lii 422 (540)
+|. .+.++++|+|+|+|||||||+||||+++++|.++++++++ .+......++.++.++|..+|+++++
T Consensus 249 ~~~----~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~~~~y~~~y~~lii 324 (436)
T COG0201 249 KRQ----SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPGSPVYIALYVVLII 324 (436)
T ss_pred hhh----hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCCcHHHHHHHHHHHH
Confidence 765 4456899999999999999999999999999999999862 24445667778999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccc
Q 009193 423 FFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGT 502 (540)
Q Consensus 423 ~Fs~fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGT 502 (540)
+|+|||++++.||||+||||||+|.||||+|||++|+|||+|+++|+|++||+|++++|++|++++...+.+ + .+|||
T Consensus 325 ~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp~l~~~~~~~~-~-~~gGT 402 (436)
T COG0201 325 FFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVP-F-YFGGT 402 (436)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c-cccCe
Confidence 999999999999999999999999999999999999999999999999999999999999999998887776 3 48999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCCc
Q 009193 503 SVLILVGCATDTARKVQAEIISQKYKNI 530 (540)
Q Consensus 503 slLI~Vgv~ldt~~qI~a~l~~~~Y~~~ 530 (540)
|+||+|||++|+++|+|+++++++|+++
T Consensus 403 slLI~V~V~l~~~~qi~~~l~~~~Y~~~ 430 (436)
T COG0201 403 SLLIVVGVALDTYEQIEAELLMEKYPGL 430 (436)
T ss_pred eeeeehHHHHHHHHHHHHHHHHhhchhH
Confidence 9999999999999999999999999998
No 3
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=3.2e-97 Score=792.78 Aligned_cols=409 Identities=39% Similarity=0.701 Sum_probs=359.4
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccc--cchHHHHHhhcCCCCcccceeecCchHHHHHH
Q 009193 119 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ--NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 195 (540)
Q Consensus 119 ~~~~~k-~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~--~~~l~~l~~~sGG~~~~~SLfsLGI~PyItAS 195 (540)
+.+.+| +++|+|++||++++++||+|++||+||+|.++..+..++ +++++++++++||+++++|+|+|||+||||||
T Consensus 5 ~~~~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAs 84 (426)
T PRK09204 5 LKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSGGALSRFSIFALGIMPYITAS 84 (426)
T ss_pred HHhHhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHhhccccHHHHHHHHcccchhcccHHHhCcHHHHHHH
Confidence 345565 799999999999999999999999999999887543332 37899999999999999999999999999999
Q ss_pred HHHHHHhhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------c-cccchhHHHHHHHHHHHH
Q 009193 196 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY------V-NDFSTDWVLTSVTLLTLG 268 (540)
Q Consensus 196 II~QLL~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~------~-~~~~~~~~~~ivl~LvaG 268 (540)
|+||||+.++|+++|++| |||+||||+|++|||+|+++|++||++++..+... . .+++...+++++++|++|
T Consensus 85 Ii~QLL~~~ip~l~~l~k-ege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~G 163 (426)
T PRK09204 85 IIMQLLTVVIPKLEELKK-EGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAG 163 (426)
T ss_pred HHHHHHHHHhhhHHHHhh-ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHH
Confidence 999999999999999997 89999999999999999999999999988665422 1 112334567788899999
Q ss_pred HHHHHHHhHhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHHHhheeeccEEeeeee
Q 009193 269 SAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPIN 347 (540)
Q Consensus 269 s~~l~WL~E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~~~-~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI~ 347 (540)
+++++||||+|||||+|||+|++|++||++++|.++.+.+.....+ .+...+++.+++++++++++||+|++|||||+|
T Consensus 164 s~i~~wL~e~It~~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~rIPi~ 243 (426)
T PRK09204 164 TMFLMWLGEQITERGIGNGISLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243 (426)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHheeeeeEEEEEEE
Confidence 9999999999999999999999999999999999987765432211 123334445556778889999999999999999
Q ss_pred eccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhChh-HHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 009193 348 YASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA-ALKKAAVALNPGGSFYLPTNILLIAFFNY 426 (540)
Q Consensus 348 y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~~-~l~~~~~~~~~~g~~y~~iy~~lii~Fs~ 426 (540)
|+++..|++.+.++++|+|+|+||+||||+|||++++++|++++++.+++ |.+....++++.+++|.++|++++++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~Fs~ 323 (426)
T PRK09204 244 YAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYLSPGSPLYILLYALLIIFFTF 323 (426)
T ss_pred ehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99887777666778999999999999999999999999999999985444 55555566788889999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHH
Q 009193 427 YYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLI 506 (540)
Q Consensus 427 fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI 506 (540)
||+++++||||+||||||||++|||+|||++|+|||+|+++|+|++||++++++|++|++++...+.+ + .+||||+||
T Consensus 324 fy~~i~~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~p~~~~~~~~~~-~-~~ggTslLI 401 (426)
T PRK09204 324 FYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEILQNALGVP-F-YFGGTSLLI 401 (426)
T ss_pred HHHHHhcCHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCcc-c-ccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988776653 3 379999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCc
Q 009193 507 LVGCATDTARKVQAEIISQKYKNI 530 (540)
Q Consensus 507 ~Vgv~ldt~~qI~a~l~~~~Y~~~ 530 (540)
+||+++||+||+|+++.++||+++
T Consensus 402 ~Vgv~l~~~~qi~~~~~~~~Y~~~ 425 (426)
T PRK09204 402 VVGVALDTMKQIESQLMSRQYEGF 425 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999986
No 4
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=2.7e-96 Score=784.05 Aligned_cols=409 Identities=41% Similarity=0.708 Sum_probs=353.9
Q ss_pred hhhcCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHH
Q 009193 121 DFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQL 200 (540)
Q Consensus 121 ~~~k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QL 200 (540)
+..|+++|+|++||++++++||+|++||+||+|.++.....+++++++++++++||+++++|+|+|||+|||||||+|||
T Consensus 4 ~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~~~~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsII~QL 83 (417)
T CHL00161 4 SKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSNNPLLNLLNTFSGGGFFVIGLFALGILPYINASIIIQL 83 (417)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhhccccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHHHHHH
Confidence 45568999999999999999999999999999998765434446799999999999999999999999999999999999
Q ss_pred HhhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHhHhhh
Q 009193 201 LAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERIS 280 (540)
Q Consensus 201 L~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~It 280 (540)
++.++|++++++|+|||+||||+|++||++|+++|++||++++.++.+...+++..++++++++|++|+++++||||+||
T Consensus 84 l~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gt~~~~wL~e~it 163 (417)
T CHL00161 84 LTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWLKPYLFNWNLLLALEIVLALTSGSMIVLWLSELIT 163 (417)
T ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99889999999986799999999999999999999999999987764333333434567888999999999999999999
Q ss_pred cccCcCcchHHHHHHHhhhhhHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhheeeccEEeeeeeeccccccccCCCC
Q 009193 281 DLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQ 360 (540)
Q Consensus 281 ~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~~~~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI~y~~r~~g~~~~~~ 360 (540)
|||+|||+|++|++||++++|+.+.+.+.....+......+.+++++++++++++++|++|||||+||++|. +++...+
T Consensus 164 ~~GiGnGiSliI~~~I~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~vv~~~~~~rrIPi~~~~~~-~~~~~~~ 242 (417)
T CHL00161 164 EKGLGNGSSLLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLISAKQL-GKSSRLA 242 (417)
T ss_pred hcCcCcchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcceEEEEEEEhhhh-ccccccC
Confidence 999999999999999999999988765432111111222233344567778899999999999999997654 3556667
Q ss_pred CCcccceeecccCChhHHHHHHhHhhHHHHHHhhChhHHHH---HHHhcCCCCcchHHHHHHHHHHHHHHHHHhcCCHHH
Q 009193 361 RSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKK---AAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDD 437 (540)
Q Consensus 361 ~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~~~l~~---~~~~~~~~g~~y~~iy~~lii~Fs~fys~i~~nPkd 437 (540)
+++|+|+|+||+|+||+|||++++++|+++++++.+.+... ....++++.++|.++|++++++|+|||+++++||||
T Consensus 243 ~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~~lii~Fs~f~~~i~~~p~~ 322 (417)
T CHL00161 243 SNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASFKILYLVLYFVLILFFSYFYSTIVLNPKD 322 (417)
T ss_pred ccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 88999999999999999999999999999999875432222 223356677889999999999999999999999999
Q ss_pred HHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Q 009193 438 VSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARK 517 (540)
Q Consensus 438 iAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ldt~~q 517 (540)
+||||||+|++|||+|||++|+|||+|+++|++++||++++++|++|++++.+++.+.+.++||||+||+|||++|++||
T Consensus 323 iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~~~~~~~~~~ggtslLI~Vgv~~~~~~q 402 (417)
T CHL00161 323 ISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESVLNLSVFKGLGTTSLLILVGVAIDTSRQ 402 (417)
T ss_pred HHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccccccchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877665434346899999999999999999
Q ss_pred HHHHHHHccCCCc
Q 009193 518 VQAEIISQKYKNI 530 (540)
Q Consensus 518 I~a~l~~~~Y~~~ 530 (540)
||+++.++||+++
T Consensus 403 i~a~~~~~~Y~~~ 415 (417)
T CHL00161 403 IQTYLISNNYENM 415 (417)
T ss_pred HHHHHHHHhhccc
Confidence 9999999999987
No 5
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=1.1e-91 Score=747.41 Aligned_cols=397 Identities=37% Similarity=0.634 Sum_probs=342.5
Q ss_pred hhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh-hch
Q 009193 128 PGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ-INP 206 (540)
Q Consensus 128 ~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~~-~~p 206 (540)
|+|++||++++++||+|++||+||+|.++..+..+++++++++++++||+++|+|+|+|||+|||||||+||||+. +.|
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~~~~ 80 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQNGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGDVPP 80 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhccccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhccCh
Confidence 5899999999999999999999999998765544456799999999999999999999999999999999999964 577
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccccchhHHHHHHHHHHHHHHHHHHHhHhhhcccCc
Q 009193 207 KLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQV-LYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLG 285 (540)
Q Consensus 207 ~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v-~~l~~~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~It~~GIG 285 (540)
.+++++| |||+||+|+|++||++|+++|++||.+++ ..+.....+++..++++++++|++|+++++||||+|||||+|
T Consensus 81 ~l~~~~~-~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~~GiG 159 (410)
T TIGR00967 81 LLQLQKK-EGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYGIG 159 (410)
T ss_pred HHHHHhh-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 7777765 89999999999999999999999999998 444333344455567788899999999999999999999999
Q ss_pred CcchHHHHHHHhhhhhHHHHHHHHHHh-hcCc------hhHHHHHHHHHHHHHHHhheeeccEEeeeeeeccccccccCC
Q 009193 286 NGTSLLIFTSIISYLPASFGRTVAEAF-QDGN------YIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGG 358 (540)
Q Consensus 286 nGiSLiI~~gIis~lP~~i~~~~~~~~-~~~~------~~~~l~~l~~~liiv~~iV~l~~aerrIPI~y~~r~~g~~~~ 358 (540)
||+|++|++||++++|.++.+.+.... +.+. ....++.+++++++++++||+|++|||||+||+++..+++
T Consensus 160 nG~SliI~~gI~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~~~~~-- 237 (410)
T TIGR00967 160 NGISLLIFAGIIATIPSGLLQPTEVRQSKVRDLISFLQNLPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGGRR-- 237 (410)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHheeeeeEEEEEEEEhhhhcCCC--
Confidence 999999999999999998876553111 1111 1223445556677788999999999999999987655443
Q ss_pred CCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhChh----HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHhcCC
Q 009193 359 LQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA----ALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLD 434 (540)
Q Consensus 359 ~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~~----~l~~~~~~~~~~g~~y~~iy~~lii~Fs~fys~i~~n 434 (540)
.++++|+|+|+||+|+||+|||++++++|+++++++.+. +.......+++..++|.++|++++++|+|||+++++|
T Consensus 238 ~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~y~~lii~Fs~f~~~~~~~ 317 (410)
T TIGR00967 238 GSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGGAWFLNPILSLSLSDPIGAILYLILIIFFSFFYVELQLN 317 (410)
T ss_pred CCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHccC
Confidence 457899999999999999999999999999999986432 3333334456667889999999999999999999999
Q ss_pred HHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHHHHHHHHHH
Q 009193 435 PDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDT 514 (540)
Q Consensus 435 PkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ldt 514 (540)
|||+||||||+|++|||+||||+|+|||+|+++|+|++||++++++|++|++++...+.+...++||||+||+||+++|+
T Consensus 318 p~~iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~~~~~~~~~~~~ggtsiLI~Vgv~~~~ 397 (410)
T TIGR00967 318 PEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIGGLPTSKGLGGTSLLIVVGVAIDT 397 (410)
T ss_pred HHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCchHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877666544458999999999999999
Q ss_pred HHHHHHHHHHccC
Q 009193 515 ARKVQAEIISQKY 527 (540)
Q Consensus 515 ~~qI~a~l~~~~Y 527 (540)
+||+++++.+++|
T Consensus 398 ~~qi~~~~~~~~y 410 (410)
T TIGR00967 398 YKQLESYLISRNY 410 (410)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999998
No 6
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=5.7e-92 Score=746.74 Aligned_cols=389 Identities=22% Similarity=0.373 Sum_probs=334.2
Q ss_pred hhhhcCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHH
Q 009193 120 GDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQ 199 (540)
Q Consensus 120 ~~~~k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~Q 199 (540)
.++.++++|+|++||++++++||+|++||+||+|.++..+ ..+++++++++++||+++|+|+|+|||+|||||||+||
T Consensus 5 ~~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~--~~~~~~~~~~~fsGG~~~~~slfsLGI~PyItAsII~Q 82 (404)
T PRK12417 5 KKFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLG--GHESFLKIAAANTGGDLRTLNIFSLGLGPWMTSMIILQ 82 (404)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcC--ccchHHHHHHHhcccccccCcHHHHccHHHHHHHHHHH
Confidence 3566789999999999999999999999999999988753 23579999999999999999999999999999999999
Q ss_pred HHhhh-chhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHhHh
Q 009193 200 LLAQI-NPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGER 278 (540)
Q Consensus 200 LL~~~-~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~ 278 (540)
||+.. .|++++++| | |.||+ |||+|+++|++||++++.++... .+....++++++++|++|++++|||||+
T Consensus 83 LL~~~~~~~l~~~~k-e-e~gr~-----~r~ltl~la~iQs~~~~~~~~~~-~~~~~~~~~~~~l~L~aGt~~~~WL~E~ 154 (404)
T PRK12417 83 LFSYRKRDGLMKQTI-E-EQHYR-----ERILTLIIAVIQSLAVILSLPSK-ERISQTNILLNTLILVTGTMFLVWLSDL 154 (404)
T ss_pred HHHhCCCcchhhcCh-H-HHHHH-----HHHHHHHHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 799999986 5 78886 49999999999999998776421 1111234667888999999999999999
Q ss_pred hhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhheeeccEEeeeeeeccccccccCC
Q 009193 279 ISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGG 358 (540)
Q Consensus 279 It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~~~~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI~y~~r~~g~~~~ 358 (540)
||+||+| |+|++|++||++++|.++.+.+... ......++.+++++++++||+|++|||||+||++|..+++
T Consensus 155 it~~GIG-G~SliI~~~Iv~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~~~~~~~-- 226 (404)
T PRK12417 155 NARYGIG-GPMPIVLVSMIKSIPQDVIEYIDAS-----HIVIILLILLVIITLFFLYFIELVEYRIPYNDIMNHNRFK-- 226 (404)
T ss_pred HhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhheEEEEEEEEhhhhccCC--
Confidence 9999999 9999999999999999887654321 1111222233445566799999999999999988876543
Q ss_pred CCCCcccceeecccCChhHHHHHHhHhhHHHHHHhh----Ch-hHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHhcC
Q 009193 359 LQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT----GI-AALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQL 433 (540)
Q Consensus 359 ~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~----~~-~~l~~~~~~~~~~g~~y~~iy~~lii~Fs~fys~i~~ 433 (540)
+++|+|+|+|+|||||+|||++++++|+++++++ ++ .+.+.....+++++++|.++|++++++|+|||+++++
T Consensus 227 --~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~fs~fys~i~~ 304 (404)
T PRK12417 227 --MYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFGSPLGVTVYLILQFLLSYFFSFVNI 304 (404)
T ss_pred --CCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999999999999999999999999999875 22 2444444556777888999999999999999999999
Q ss_pred CHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccc--cccccccchhHHHHHHH
Q 009193 434 DPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLT--AFRGFAGTSVLILVGCA 511 (540)
Q Consensus 434 nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~--~~~~~gGTslLI~Vgv~ 511 (540)
||||+||||||||+||||+||||+|++||+|+++|++++||+|++++|++|.+++.. +.+ .+ .+||||+||+|||+
T Consensus 305 nP~diAe~lkk~g~~IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~~~~~-~~~~~~~-~~ggtsllI~Vgv~ 382 (404)
T PRK12417 305 NTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLYFTLF-DPHLSTE-IYFSGQFMMFVGMS 382 (404)
T ss_pred CHHHHHHHHHHCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccc-eeccchheehhhhH
Confidence 999999999999999999999999999999999999999999999999999998654 332 12 26899999999999
Q ss_pred HHHHHHHHHHHHHccCCCc
Q 009193 512 TDTARKVQAEIISQKYKNI 530 (540)
Q Consensus 512 ldt~~qI~a~l~~~~Y~~~ 530 (540)
+||+||||+++.+++|+++
T Consensus 383 ldt~~qi~s~l~~~~Y~~~ 401 (404)
T PRK12417 383 FNIADEIRALLYFDKYKPL 401 (404)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999987
No 7
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=5e-87 Score=708.17 Aligned_cols=387 Identities=21% Similarity=0.355 Sum_probs=323.1
Q ss_pred chhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh-h
Q 009193 126 PLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ-I 204 (540)
Q Consensus 126 ~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~~-~ 204 (540)
.+|+|++||++++++||+|++||+||+|.+.......++++++++|+++||+++|+|+|+|||+|||||||+||||+. .
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~~~ 80 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQDMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSFTK 80 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhHHHhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHhCc
Confidence 378999999999999999999999999997632122245799999999999999999999999999999999999998 7
Q ss_pred chhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHhHhhhcccC
Q 009193 205 NPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKL 284 (540)
Q Consensus 205 ~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~It~~GI 284 (540)
.|++++++| | |.|| +|||+|+++|++||.++++.+... .+....+.++++++|++|+++++||||+|||||+
T Consensus 81 ~~~l~~~~~-~-~~~~-----~tr~ltl~~a~iQs~~~~~~~~~~-~~~~~~~~~~~vl~L~~Gt~iv~wL~E~it~~Gi 152 (395)
T TIGR02920 81 SDGFDAQSP-K-EQQY-----RERFLTLIIAIIQGLAIIHSFTNK-NGLSDFNMLLATLILVTGTCLLVWLADLNAKYGI 152 (395)
T ss_pred CcchhhhCH-H-HhhH-----HHHHHHHHHHHHHHHHHHHHhhcc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 899999987 4 4444 499999999999999998776432 1111124566788999999999999999999999
Q ss_pred cCcchHHHHHHHhhhhhHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhheeeccEEeeeeeeccccccccCCCCCCcc
Q 009193 285 GNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAY 364 (540)
Q Consensus 285 GnGiSLiI~~gIis~lP~~i~~~~~~~~~~~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI~y~~r~~g~~~~~~~~sy 364 (540)
| |+|++|++||++++|..+.+.+. ......+++.++.+++++++++++|++|||||++|++|.. + .++++|
T Consensus 153 G-G~sllI~~~I~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~v~~~~~~~rIpv~~~~~~~-~---~~~~~y 223 (395)
T TIGR02920 153 G-GSMPIVLVSMLKNIPSNVFELFQ----MSYIWLIALLILLTLVALFLLAFIERAEYRIPVNDISLHN-R---SNLMSY 223 (395)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHheecceEEEEEEEchhhc-c---CCCCcc
Confidence 9 99999999999999988766442 1111222333344555566799999999999999987653 2 246799
Q ss_pred cceeecccCChhHHHHHHhHhhHHHH----HHhhCh-hHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 009193 365 LPFKVNSSGVMPIIFSTSSLALPGTL----ARFTGI-AALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVS 439 (540)
Q Consensus 365 lPIKln~aGvMPIIFassll~lp~~i----~~~~~~-~~l~~~~~~~~~~g~~y~~iy~~lii~Fs~fys~i~~nPkdiA 439 (540)
+|+|+||+||||+|||++++++|+++ ++++++ ...+.+...+++..++|.++|++++++|+|||+.+++||||+|
T Consensus 224 iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~lii~fs~fys~i~~nP~diA 303 (395)
T TIGR02920 224 LPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINNWVFQFSFSSPVGILIYLILQMLLSYFFTFVNINPKEIS 303 (395)
T ss_pred cceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHheECHHHHH
Confidence 99999999999999999999999555 455432 2222233335566788999999999999999999999999999
Q ss_pred HHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcc-cccccccccchhHHHHHHHHHHHHHH
Q 009193 440 EQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTH-LTAFRGFAGTSVLILVGCATDTARKV 518 (540)
Q Consensus 440 e~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~-~~~~~~~gGTslLI~Vgv~ldt~~qI 518 (540)
|||||||++|||+||||+|+|||+|+++|+|++||++++++|++|++++...+ ...+ .++|||++|+|||++||+||+
T Consensus 304 ~~Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~lP~~~~~~~~~~~~~-~~ggtsllI~vgv~ldt~~qi 382 (395)
T TIGR02920 304 KSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIPLYFALFVPHLLTE-AYIPGQFMMITGMSFNIADEI 382 (395)
T ss_pred HHHHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccce-eehhhhhhhhhhhHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999876644 4233 278999999999999999999
Q ss_pred HHHHHHccCCCc
Q 009193 519 QAEIISQKYKNI 530 (540)
Q Consensus 519 ~a~l~~~~Y~~~ 530 (540)
|+++.++||+++
T Consensus 383 ~~~~~~~~Y~~~ 394 (395)
T TIGR02920 383 RTILYFDRYKPL 394 (395)
T ss_pred HHHHHHHhhCCC
Confidence 999999999985
No 8
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=4.7e-85 Score=704.53 Aligned_cols=380 Identities=22% Similarity=0.285 Sum_probs=319.4
Q ss_pred cCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh
Q 009193 124 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 203 (540)
Q Consensus 124 k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~~ 203 (540)
|.++|+|++||++++++||+|++||+||+|.++ .+++++++.++||+ ++|+|+|||+|||||||+||||+.
T Consensus 23 ~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-------~~~l~~l~~~~gg~--~~slf~LGI~PyItAsII~QLL~~ 93 (462)
T PRK08568 23 HVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-------QDLFELLRIIFAGS--FGTLLQLGIGPIVTAGIILQLLVG 93 (462)
T ss_pred CccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-------ccHHHHHHHHhCCc--ccchHHhCcHHHHHHHHHHHHHhh
Confidence 369999999999999999999999999999764 37999999999998 799999999999999999999974
Q ss_pred hchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHHHHHHHHHHHhHhhh
Q 009193 204 INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVN---DFSTDWVLTSVTLLTLGSAFTTYIGERIS 280 (540)
Q Consensus 204 ~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~---~~~~~~~~~ivl~LvaGs~~l~WL~E~It 280 (540)
.++.++++ +.|+||+|+|++||++|+++|++||.+++.++..... ..+..++++++++|++|+++++||||+||
T Consensus 94 --~~l~~l~~-~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~~Gt~i~~wL~E~It 170 (462)
T PRK08568 94 --SKLINLDL-SDPEDRALFQGLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGGILIILLDELVS 170 (462)
T ss_pred --Cchheecc-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445544 4589999999999999999999999999877531111 12344567788999999999999999999
Q ss_pred cccCcCcchHHHHHHHhhhhhHHHHHHH--------------HHHhhcCc----hh-----HHHHHHHHHHHHHHHhhee
Q 009193 281 DLKLGNGTSLLIFTSIISYLPASFGRTV--------------AEAFQDGN----YI-----GLATIIISFILLVLGIVYV 337 (540)
Q Consensus 281 ~~GIGnGiSLiI~~gIis~lP~~i~~~~--------------~~~~~~~~----~~-----~~l~~l~~~liiv~~iV~l 337 (540)
|||+|||+|++|++||++++|.++...+ .+...+++ .. ..++.+++++++++++||+
T Consensus 171 k~GiGnGiSliI~~gI~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~v~~ 250 (462)
T PRK08568 171 KWGIGSGISLFILAGVSQTIFVGLFNWLTGGQGLPVGFIPALFSAITSGNLTLALLLTTRGLLLLGLITTIVIFLIVVYL 250 (462)
T ss_pred hcCcCcchHHHHHHHHHHHHHHHHhhhhcccCccccchHHHHHHHHhcCccchhhhhcccccHHHHHHHHHHHHHHheeE
Confidence 9999999999999999999998876543 01111111 11 2345555677888999999
Q ss_pred eccEEeeeeeeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhCh---hHH-----------HHHH
Q 009193 338 QEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---AAL-----------KKAA 403 (540)
Q Consensus 338 ~~aerrIPI~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~---~~l-----------~~~~ 403 (540)
|++||||||+|++ .+| +++|+|+|+||+|+||+|||++++++|+++++++.+ +++ +...
T Consensus 251 q~~~~~IPI~~~k-~~g------~~s~iPiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 323 (462)
T PRK08568 251 ESMRVEIPLSHGR-VRG------ARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLGIPILGTYDSSGASPISGLA 323 (462)
T ss_pred EeeEEEEEEEecc-ccC------CCceeeEEecccCcHHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccccchhHHH
Confidence 9999999999965 333 678999999999999999999999999999887632 122 1222
Q ss_pred HhcCC--------CCcc----hHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHcCCccccccCCch-hHHHHHHHHHHH
Q 009193 404 VALNP--------GGSF----YLPTNILLIAFFNYYYTFLQ-LDPDDVSEQLKRQGASIPLVRPGKS-TAAFLKTVLSRI 469 (540)
Q Consensus 404 ~~~~~--------~g~~----y~~iy~~lii~Fs~fys~i~-~nPkdiAe~Lkk~G~~IpGiRPG~~-T~~yL~kvl~ri 469 (540)
.++++ ..++ |.++|++++++|+|||+++. +||||+||||||||++|||+|||++ |++||+|+++|+
T Consensus 324 ~~~~~p~~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lkk~g~~IpGiRpG~~~t~~yL~~~i~r~ 403 (462)
T PRK08568 324 YYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPPV 403 (462)
T ss_pred HHhCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccCcCCCchHHHHHHHHHHHHH
Confidence 23432 2333 78889999999999999995 9999999999999999999999997 999999999999
Q ss_pred HHHhHHHHHHHHHhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHccCCCc
Q 009193 470 SVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNI 530 (540)
Q Consensus 470 t~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ldt~~qI~a~l~~~~Y~~~ 530 (540)
|++||++++++|++|++++. . .+|||+||+||+++|++||+++++.+++|+++
T Consensus 404 t~~Ga~~l~~ia~lp~~~~~------~--g~gtslLI~Vgv~~~~~~qi~~~~~~~~Y~~~ 456 (462)
T PRK08568 404 TVIGGAIVGLLAVLADLLGA------L--GGGTGLLLTVSIVYQLYEEIAREQLMEMYPLL 456 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHh------c--CCchhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999862 2 37999999999999999999999999999998
No 9
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=1.3e-77 Score=647.66 Aligned_cols=376 Identities=19% Similarity=0.199 Sum_probs=302.7
Q ss_pred hhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHH
Q 009193 120 GDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVF 198 (540)
Q Consensus 120 ~~~~k-~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~ 198 (540)
.+.+| .++|+|++||++++++||+|++||+||+|.++.. ++++++.+.|+|+ ++|||+|||+|||||||||
T Consensus 22 ~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~-----~~~~~~~~ifag~---~~slf~LGI~PyItAsII~ 93 (474)
T PTZ00219 22 AEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSS-----DPFYWMRVILASN---RGTLMELGISPIVTSSMVM 93 (474)
T ss_pred cCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhcc-----chHHHHHHHHhcC---cchHHHhccHHHHHHHHHH
Confidence 34444 6999999999999999999999999999987532 3466677777665 7899999999999999999
Q ss_pred HHHhh--hchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccchhHHHHHHHHHHHHHHHHHHH
Q 009193 199 QLLAQ--INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-PYVNDFSTDWVLTSVTLLTLGSAFTTYI 275 (540)
Q Consensus 199 QLL~~--~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~-~~~~~~~~~~~~~ivl~LvaGs~~l~WL 275 (540)
|||++ ++|..+++ +++|||+|++||++|+++|++||++++.... ....+.+...++++++||++|+++++||
T Consensus 94 QLL~~~~l~~~~~~~-----~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g~~~v~wL 168 (474)
T PTZ00219 94 QLLAGSKIIDVDQNN-----KEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILL 168 (474)
T ss_pred HHHhhCCcccchhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99964 45554444 4459999999999999999999999984421 1122233334667788999999999999
Q ss_pred hHhhhc-ccCcCcchHHHHHHHhhhhh-HHH-----------------HHHHHHHhhc-C------------chhHHHHH
Q 009193 276 GERISD-LKLGNGTSLLIFTSIISYLP-ASF-----------------GRTVAEAFQD-G------------NYIGLATI 323 (540)
Q Consensus 276 ~E~It~-~GIGnGiSLiI~~gIis~lP-~~i-----------------~~~~~~~~~~-~------------~~~~~l~~ 323 (540)
||+||| ||+|||+||+|++||++++| +.+ .+.+...... + +..+ ++.
T Consensus 169 ~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l~~-~~~ 247 (474)
T PTZ00219 169 DELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHLPN-LTN 247 (474)
T ss_pred HHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhccccc-HHH
Confidence 999999 99999999999999999998 544 1111110010 0 1112 223
Q ss_pred HHHHHHHHHHhheeeccEEeeeeeeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhC----hh--
Q 009193 324 IISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG----IA-- 397 (540)
Q Consensus 324 l~~~liiv~~iV~l~~aerrIPI~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~----~~-- 397 (540)
+++++++++++||+|++|||||++|+++. | +++++|+|+||+|+||+|||++++++|++++++++ ++
T Consensus 248 ~~~~~~i~~~vv~~~~~~~~IPi~~~~~~-g------~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~ 320 (474)
T PTZ00219 248 LLATVLVFLVVIYFQGFRVDLPLKSQKVR-G------QQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFL 320 (474)
T ss_pred HHHHHHHHHhheeeeeeEEEEeeeccccc-C------cCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 35667778899999999999999997543 3 56777999999999999999999999999988862 11
Q ss_pred --HHHH---------------HHHhcCC--------CCcchHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHcCC
Q 009193 398 --ALKK---------------AAVALNP--------GGSFYLPTNILLIAFFNYYYTFLQ-----LDPDDVSEQLKRQGA 447 (540)
Q Consensus 398 --~l~~---------------~~~~~~~--------~g~~y~~iy~~lii~Fs~fys~i~-----~nPkdiAe~Lkk~G~ 447 (540)
+++. ...++++ ..++|.++|++++++|||||+.+. +||||+||||||+|+
T Consensus 321 ~~~l~~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~ 400 (474)
T PTZ00219 321 INLLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGM 400 (474)
T ss_pred cccccceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 1111 1112332 356788999999999999999976 899999999999999
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009193 448 SIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIIS 524 (540)
Q Consensus 448 ~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ldt~~qI~a~l~~ 524 (540)
+|||+|||++|+|||+|+++|+|++||+|++++|++|++++. . .||||+||+|||+.+.+|++..+..+
T Consensus 401 ~IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~~------~--~gGTslLI~VgV~~~~~e~~~~e~~~ 469 (474)
T PTZ00219 401 GMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTILADFLGA------I--GSGTGILLAVTIIYQYYETFAKEKEQ 469 (474)
T ss_pred CccCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------c--CCchhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999861 2 38999999999999999999888655
No 10
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=5.9e-74 Score=599.64 Aligned_cols=327 Identities=41% Similarity=0.641 Sum_probs=281.8
Q ss_pred ceeecCchHHHHHHHHHHHHhhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-c-------c
Q 009193 182 GICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVN-D-------F 253 (540)
Q Consensus 182 SLfsLGI~PyItASII~QLL~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~-~-------~ 253 (540)
|+|+|||+|||||||+||++. .|+++|+++ |||+||+|++++||++|+++|++||++++..++.+.. + .
T Consensus 1 SlfsLGI~PyitAsIi~Qll~--~~~l~~l~~-~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~ 77 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLLI--IPKLIKLQK-EGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGS 77 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHHH--SSSSSSHST-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTT
T ss_pred ChHhhccHHHHHHHHHHHHHh--cccHHHhhh-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccch
Confidence 689999999999999999994 699999997 7999999999999999999999999999977665432 1 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHhh----cCchhHHHHHHHHHHH
Q 009193 254 STDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQ----DGNYIGLATIIISFIL 329 (540)
Q Consensus 254 ~~~~~~~ivl~LvaGs~~l~WL~E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~~----~~~~~~~l~~l~~~li 329 (540)
+....++++++|++|+++++||||+|||||+|||+|++|++||++++|.++.+.++.... ..+....+..++++++
T Consensus 78 ~~~~~~~i~l~L~~G~~i~~wL~e~it~~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 157 (346)
T PF00344_consen 78 GFINYLLIVLQLVAGSMILIWLSELITKYGIGNGISLIIFAGIISNLPWSIINLFQLLSNKAGSLSNALFLLIILIITLV 157 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 233457888999999999999999999999999999999999999999998887765431 1234444566667788
Q ss_pred HHHHhheeeccEEeeeeeeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhChh----HH-HHHHH
Q 009193 330 LVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA----AL-KKAAV 404 (540)
Q Consensus 330 iv~~iV~l~~aerrIPI~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~~----~l-~~~~~ 404 (540)
+++++||+|++|||||++|+++. +...++++|+|+|+||+|+||+||+++++++|+++++++... +. +....
T Consensus 158 ~~~~~v~l~~~~~rIPi~~~~~~---~~~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~ 234 (346)
T PF00344_consen 158 VIALVVYLQEAERRIPIQYARIV---NSSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAY 234 (346)
T ss_dssp HHHHHHHHHHCEEEECEBBSSSB-----SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHH
T ss_pred HHHhheeeeeeEEEEEEEecccc---ccCcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCCccccHHHHHHH
Confidence 89999999999999999997653 233457999999999999999999999999999999887432 11 11233
Q ss_pred hc--CCCCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHH
Q 009193 405 AL--NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAA 482 (540)
Q Consensus 405 ~~--~~~g~~y~~iy~~lii~Fs~fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~ 482 (540)
++ +...++|..+|++++++|+|+|+++++||||+||||||+|+||||+|||++|+|||+|+++|++++||++++++++
T Consensus 235 ~~~~~~~~~~y~~~~~~li~~Fs~~~~~~~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~~~~~~G~~~l~~ia~ 314 (346)
T PF00344_consen 235 YFSQNLNSPLYIIFYLILIILFSYFFSFININPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIPRLSFLGALFLALIAV 314 (346)
T ss_dssp HTSSSHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcchHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45 5567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcccccccccccchhHHHHHHHHHHHH
Q 009193 483 GPAVIEQTTHLTAFRGFAGTSVLILVGCATDTAR 516 (540)
Q Consensus 483 lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ldt~~ 516 (540)
+|++++...+ ..+ .++|||++|+||+++|++|
T Consensus 315 ~p~~~~~~~~-~~~-~~~gtslli~V~v~~~~~~ 346 (346)
T PF00344_consen 315 LPLIFGLFGG-SSL-FFGGTSLLIIVGVIIDTYE 346 (346)
T ss_dssp HHHHHTTSSS-CSC-CCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-cch-hhHHHHHHHHHHHHHHhcC
Confidence 9999987766 233 3799999999999999986
No 11
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-52 Score=422.98 Aligned_cols=378 Identities=19% Similarity=0.185 Sum_probs=313.0
Q ss_pred hcCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHh
Q 009193 123 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 202 (540)
Q Consensus 123 ~k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~ 202 (540)
.|.|+++|++||...+++|.+.+|||++|+..++ ..|++.+++.+.|.+ |.++|+|||.|++|++.|||||+
T Consensus 25 rk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssd------t~DP~yw~Rvilasn--rgTLMelGisPivtSglimQlLa 96 (476)
T KOG1373|consen 25 RKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSD------TADPFYWMRVILASN--RGTLMELGISPIVTSGLIMQLLA 96 (476)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhhccccccccCC------CCCcHHHHHHHHhcC--CcchhhhccchhhHHHHHHHHHc
Confidence 4679999999999999999999999999997653 468999999999986 78999999999999999999999
Q ss_pred hhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccchhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 009193 203 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRP-YVNDFSTDWVLTSVTLLTLGSAFTTYIGERISD 281 (540)
Q Consensus 203 ~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~-~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~It~ 281 (540)
+ .++.+.+. +-+.||..+|..||++++++++.||..++.+..+ ...+.+...++++++||+..+.+++.|||+++|
T Consensus 97 g--~kiIeV~~-~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG~yG~p~dLg~~~clLii~QL~~Agiiv~lLdEllqK 173 (476)
T KOG1373|consen 97 G--SKIIEVNF-NIKEDRELFNGAQKLFAIIITVGQAVVYVMTGMYGSPSDLGVGICLLIILQLFFAGIIVILLDELLQK 173 (476)
T ss_pred c--CcEEEecC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhcchhHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 7 67777764 6677899999999999999999999999987533 235677777889999999999999999999999
Q ss_pred -ccCcCcchHHHHHHHhhhhh------H------------HHHHHHHHHh-------------hcCchhHHHHHHHHHHH
Q 009193 282 -LKLGNGTSLLIFTSIISYLP------A------------SFGRTVAEAF-------------QDGNYIGLATIIISFIL 329 (540)
Q Consensus 282 -~GIGnGiSLiI~~gIis~lP------~------------~i~~~~~~~~-------------~~~~~~~~l~~l~~~li 329 (540)
||+|||+|++|.+|||+++. . .+++.++.+. ...|+ +++.-++++++
T Consensus 174 GyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~RqnL-PNl~nl~at~l 252 (476)
T KOG1373|consen 174 GYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQNL-PNLTNLLATVL 252 (476)
T ss_pred ccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhcc-cHHHHHHHHHH
Confidence 99999999999999999873 1 2333332111 11123 33555667788
Q ss_pred HHHHhheeeccEEeeeeeeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhCh----h----HHHH
Q 009193 330 LVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI----A----ALKK 401 (540)
Q Consensus 330 iv~~iV~l~~aerrIPI~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~----~----~l~~ 401 (540)
++++++|+|..++++|+++ +|+|| +.+.+|||+.|++.||||+.+++..+...++|++.. + .++.
T Consensus 253 if~iViYlQgfRVeLPirS-~r~RG------~~~~yPIKL~YTsn~pIilqsalvsni~~isqll~~k~~~n~~v~llG~ 325 (476)
T KOG1373|consen 253 IFLIVIYLQGFRVELPIRS-TRARG------QYGSYPIKLFYTSNMPIILQSALVSNIFVISQLLYKKFPGNFLVRLLGV 325 (476)
T ss_pred HHHHHhhccceEEEeeecc-hhhcc------cCCccceEeeecCCcHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEee
Confidence 8899999999999999997 66775 778899999999999999999999988888877521 1 1111
Q ss_pred HH------HhcCCCCcchH-----------------HHH----HHHHHHHHHHHHHh-cCCHHHHHHHHHHcCCcccccc
Q 009193 402 AA------VALNPGGSFYL-----------------PTN----ILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVR 453 (540)
Q Consensus 402 ~~------~~~~~~g~~y~-----------------~iy----~~lii~Fs~fys~i-~~nPkdiAe~Lkk~G~~IpGiR 453 (540)
|. ...+.+|+.|+ ++| ..-|.+|+.-|-.+ +.+|||+|++||+|++.++|+|
T Consensus 326 w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ~mvm~G~R 405 (476)
T KOG1373|consen 326 WEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQQMVMRGHR 405 (476)
T ss_pred eecCCCCcccccccceeEecCChHHHHHHhhCcchhHHHHHHHHHHHHHHHhHHHHHcCCCHHHHHHHHHhccceecCcc
Confidence 11 11233333333 344 34588999999998 9999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHccCC
Q 009193 454 PGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYK 528 (540)
Q Consensus 454 PG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ldt~~qI~a~l~~~~Y~ 528 (540)
.+. +++.|+|+++..+++||.+++.++++.++++ +. ++||+++++|.++++.+|+++.+...+.+.
T Consensus 406 E~n-~~~eLnr~IPtAA~~Gg~~igaltV~~d~lg------ai--GsgtgIllavt~iyqy~E~~~kE~~~~~g~ 471 (476)
T KOG1373|consen 406 ETN-MAKELNRYIPTAAAFGGLCIGALTVLADLLG------AI--GSGTGILLAVTIIYQYFEIFAKEQAQEGGF 471 (476)
T ss_pred hhh-HHHHHHhhccHHHHhhhhHHHHHHHHHHHhh------cc--cCCceEEeehHHHHHHHHHHHHHHhhcCCc
Confidence 976 9999999999999999999999999999975 34 589999999999999999999988776553
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=94.45 E-value=0.016 Score=41.60 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=25.5
Q ss_pred HHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCC
Q 009193 139 ALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGG 177 (540)
Q Consensus 139 iIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~ 177 (540)
++|.+.++|||+|+... +.+|++.+++++.+|+
T Consensus 1 ilYl~ls~ipLyG~~~~------~~~D~f~~~R~i~As~ 33 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSA------SSSDPFYWLRAIFASN 33 (35)
T ss_dssp HHHHHHHHSB-STSTTT------TSSCCHTTTHHHHTSS
T ss_pred CEEEEeeCCccccccCC------CcCCHHHHHHHHHccc
Confidence 57899999999999332 2358899999998886
No 13
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=45.22 E-value=42 Score=28.93 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHh
Q 009193 423 FFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAG 483 (540)
Q Consensus 423 ~Fs~fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~l 483 (540)
.+.-+|.-+-+.-+...| .|..+||--||.|..-.+.|...+.|+++++.-++++.+
T Consensus 14 Ww~~lF~vLP~gvrtq~E----~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 14 WWIVLFAVLPFGVRTQDE----AGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred HHHHHHHHccCCccccCc----CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555444444444 488899999999999999999999999999888877664
No 14
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=42.18 E-value=52 Score=30.22 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=21.5
Q ss_pred cCCccccccCCchhHHHHHHHHHHHHHHhHHH
Q 009193 445 QGASIPLVRPGKSTAAFLKTVLSRISVLGSVF 476 (540)
Q Consensus 445 ~G~~IpGiRPG~~T~~yL~kvl~rit~iGaif 476 (540)
....|||+|||+.-.+-+.+....- +...+.
T Consensus 37 k~~~ipGFRkGK~P~~vi~~~~g~~-i~~~~~ 67 (145)
T PF05697_consen 37 KKVKIPGFRKGKAPRNVIEKRYGKE-IREEAI 67 (145)
T ss_dssp TTTTBTTS-TTSS-HHHHHHHHCHH-HHHHHH
T ss_pred hhCCCCCCCCCCCCHHHHHHHHHHH-HHHHHH
Confidence 4668999999998888888877765 554444
No 15
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=28.17 E-value=1.4e+02 Score=26.53 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhch-hhhhhhhhccHHHHHHHHHHHHHHHHH
Q 009193 190 PFINAQIVFQLLAQINP-KLQDLQKREGEAGRKKVLQYTRYASVG 233 (540)
Q Consensus 190 PyItASII~QLL~~~~p-~L~~l~k~ege~Grkki~~~tR~Ltli 233 (540)
=.++.||++|++.++.- ...+.+- +.++.+++.+..-.+.+.+
T Consensus 46 ~Li~iSlvLQv~vgilli~~~~~n~-~~~~~~~~~~~lnn~~~~~ 89 (104)
T PF04923_consen 46 TLISISLVLQVVVGILLIFISRYNI-NKPEKQRRANRLNNWATIL 89 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHH
Confidence 35789999999987432 2222332 2223344455544444433
No 16
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=26.03 E-value=1.2e+02 Score=28.97 Aligned_cols=26 Identities=8% Similarity=0.272 Sum_probs=19.0
Q ss_pred HHHHHHhhhchhhhhhhhhccHHHHHHHH
Q 009193 196 IVFQLLAQINPKLQDLQKREGEAGRKKVL 224 (540)
Q Consensus 196 II~QLL~~~~p~L~~l~k~ege~Grkki~ 224 (540)
+|=|+|. -.+++++++|.+.||-+++
T Consensus 3 ~Ik~IL~---~~id~iN~~E~RDnkprFs 28 (155)
T PF10777_consen 3 EIKRILI---EEIDRINREEKRDNKPRFS 28 (155)
T ss_pred HHHHHHH---HHHHHHHHHhccCCCcccc
Confidence 3456666 4778888888888887765
No 17
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=25.22 E-value=3.2e+02 Score=26.77 Aligned_cols=45 Identities=24% Similarity=0.531 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccccccCCc-hhHHHHH
Q 009193 413 YLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGK-STAAFLK 463 (540)
Q Consensus 413 y~~iy~~lii~Fs~fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~-~T~~yL~ 463 (540)
|+.++.+++.+|+.||++-- ..+||+|++. -|..||.| +|.+-|+
T Consensus 60 ~~a~~gl~~l~~si~~~fry---~Rlar~L~~~---~~~~~P~k~~~~~~l~ 105 (183)
T PF12263_consen 60 FLAICGLVALFFSIFWSFRY---TRLARRLRSP---NPAKRPSKADVVRLLR 105 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhccc---CCCCCCCHHHHHHHHH
Confidence 33344445555555555432 6789999944 68889977 3444443
No 18
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=23.36 E-value=3e+02 Score=27.23 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHH--HHHHHccCCCcccccc
Q 009193 503 SVLILVGCATDTARKVQ--AEIISQKYKNIEFYDI 535 (540)
Q Consensus 503 slLI~Vgv~ldt~~qI~--a~l~~~~Y~~~~~~~~ 535 (540)
..+|..|+.++.+...- -..+.|+|++-|.|..
T Consensus 173 ~~~I~lGi~~q~~tllPi~~k~~~~~~~~~~~~~~ 207 (210)
T PRK01100 173 KTLIMVGSLFQVISINPITYKLLNRRYKNYEKYER 207 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHh
Confidence 45678899988876554 4688999999998874
No 19
>PRK01490 tig trigger factor; Provisional
Probab=22.17 E-value=85 Score=34.24 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.9
Q ss_pred HHHHcCCccccccCCchhHHHHHHHHHH
Q 009193 441 QLKRQGASIPLVRPGKSTAAFLKTVLSR 468 (540)
Q Consensus 441 ~Lkk~G~~IpGiRPG~~T~~yL~kvl~r 468 (540)
+++| ...|||+|||+.-...+.+...+
T Consensus 34 ~~~k-~~~ipGFRkGkvP~~ii~k~~g~ 60 (435)
T PRK01490 34 KLAK-TVRIPGFRKGKVPRKIVEQRYGE 60 (435)
T ss_pred HHHh-hCcCCCccCCCCCHHHHHHHHhH
Confidence 3444 48999999999888888887754
No 20
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=22.17 E-value=5.6e+02 Score=22.75 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=19.7
Q ss_pred HhHhhhc-ccCcCcchHHHHHHHhhhhh
Q 009193 275 IGERISD-LKLGNGTSLLIFTSIISYLP 301 (540)
Q Consensus 275 L~E~It~-~GIGnGiSLiI~~gIis~lP 301 (540)
+.|.+.+ -|+|.|++++.+.+++.-+-
T Consensus 52 ~~~~vA~~lGi~~~~n~lf~~~i~~ll~ 79 (115)
T PF10066_consen 52 ILDWVAKLLGIGRPPNLLFYLGILFLLV 79 (115)
T ss_pred HHHHHHHHHCCCchhHHHHHHHHHHHHH
Confidence 3444444 79999999999888876543
Done!