Query 009193
Match_columns 540
No_of_seqs 162 out of 1189
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 20:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjs_Y Preprotein translocase 100.0 4E-103 1E-107 836.2 40.7 410 119-530 5-427 (434)
2 3dl8_G Preprotein translocase 100.0 4E-104 1E-108 844.1 20.5 410 119-530 5-426 (429)
3 3din_C Preprotein translocase 100.0 1E-102 4E-107 832.1 21.0 403 119-530 5-421 (431)
4 3j01_A Preprotein translocase 100.0 8E-103 3E-107 834.4 19.4 403 125-530 10-425 (435)
5 1rh5_A Preprotein translocase 100.0 1.8E-92 6E-97 755.0 26.2 381 124-534 20-435 (436)
6 3mp7_A Preprotein translocase 100.0 1.9E-91 6.6E-96 754.5 12.5 384 124-535 23-468 (482)
7 2ww9_A SEC sixty-one protein h 100.0 5.1E-87 1.7E-91 721.4 23.7 376 124-527 26-476 (490)
8 2wwb_A Protein transport prote 100.0 1.7E-83 5.9E-88 692.2 29.5 370 123-523 24-466 (476)
9 2nsc_A Trigger factor, TF; cha 55.9 8.1 0.00028 32.9 3.4 23 445-467 37-59 (109)
10 1p9y_A Trigger factor, TF; alp 48.5 12 0.00042 32.4 3.4 23 446-468 41-63 (121)
11 2d3o_1 Trigger factor, TF; rib 39.9 11 0.00036 32.4 1.6 27 440-467 32-58 (112)
12 1t11_A Trigger factor, TF; hel 22.2 56 0.0019 33.9 3.7 23 445-467 40-62 (392)
No 1
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=3.8e-103 Score=836.17 Aligned_cols=410 Identities=32% Similarity=0.539 Sum_probs=352.9
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccc--cchHHHHHhhcCCCCcccceeecCchHHHHHH
Q 009193 119 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ--NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 195 (540)
Q Consensus 119 ~~~~~k-~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~--~~~l~~l~~~sGG~~~~~SLfsLGI~PyItAS 195 (540)
+.++|| +++|+|++||++++++||+|+|||+||+|.+++++.+++ +++++++|+|+||+++|+|+|+|||+||||||
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItAS 84 (434)
T 2zjs_Y 5 FWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAA 84 (434)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHH
T ss_pred HHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHH
Confidence 446676 699999999999999999999999999999887653222 46889999999999999999999999999999
Q ss_pred HHHHHHhhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-----cccc--cchhHHHHHHHHHHH
Q 009193 196 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-P-----YVND--FSTDWVLTSVTLLTL 267 (540)
Q Consensus 196 II~QLL~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~-~-----~~~~--~~~~~~~~ivl~Lva 267 (540)
||||||+.++|.++|++| |||+||||+|++|||+|+++|++||++++..+. . ...+ .+..++++++++|++
T Consensus 85 II~QLL~~vip~l~~l~k-eGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a 163 (434)
T 2zjs_Y 85 IIMQILVTVVPALEKLSK-EGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA 163 (434)
T ss_dssp HHHHHHHHHSHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence 999999999999999985 999999999999999999999999999998763 2 1123 344456788899999
Q ss_pred HHHHHHHHhHhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHhheeeccEEeeee
Q 009193 268 GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDG-NYIGLATIIISFILLVLGIVYVQEAERKIPI 346 (540)
Q Consensus 268 Gs~~l~WL~E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~~~~-~~~~~l~~l~~~liiv~~iV~l~~aerrIPI 346 (540)
|++++|||||+|||||+|||+|++|++||++++|..+.+.++....+. ++..+++.+++++++++++||+|++||||||
T Consensus 164 Gt~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~vV~~~~~~rrIPv 243 (434)
T 2zjs_Y 164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPV 243 (434)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHheeeEEEEee
Confidence 999999999999999999999999999999999999888765332211 4444455566677888899999999999999
Q ss_pred eeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhC-hhHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 009193 347 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG-IAALKKAAVALNPGGSFYLPTNILLIAFFN 425 (540)
Q Consensus 347 ~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~-~~~l~~~~~~~~~~g~~y~~iy~~lii~Fs 425 (540)
||++|.+||+.+.++++|+|+|+|++||||+|||++++++|+++++++. +.|.+....++++++++|.++|++++++|+
T Consensus 244 qyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs 323 (434)
T 2zjs_Y 244 QYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVILFT 323 (434)
T ss_dssp EECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred hhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 9999988888888899999999999999999999999999999999764 345555566678888999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhH
Q 009193 426 YYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVL 505 (540)
Q Consensus 426 ~fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslL 505 (540)
|||+++++||||+||||||||+||||+|||++|++||+|+++|+|++||+|++++|++|+++..+.+.+.+ ++||||+|
T Consensus 324 ~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~~~~~~-~~gGTslL 402 (434)
T 2zjs_Y 324 YVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSI-AFSGIGLL 402 (434)
T ss_dssp HHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCG-GGSSHHHH
T ss_pred HHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccc-cccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998544354222 47999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCc
Q 009193 506 ILVGCATDTARKVQAEIISQKYKNI 530 (540)
Q Consensus 506 I~Vgv~ldt~~qI~a~l~~~~Y~~~ 530 (540)
|+|||++||+||+|+++.++||+++
T Consensus 403 I~VgV~ldt~~qi~s~~~~~~Y~~~ 427 (434)
T 2zjs_Y 403 IVVGVALDTLRQVESQLMLRSYEGF 427 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999998
No 2
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=3.6e-104 Score=844.05 Aligned_cols=410 Identities=38% Similarity=0.660 Sum_probs=352.4
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhccc--ccchHHHHHhhcCCCCcccceeecCchHHHHHH
Q 009193 119 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 195 (540)
Q Consensus 119 ~~~~~k-~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~--~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItAS 195 (540)
+.++|| +++|+|++||++++++||+|+|||+||+|.++.++.++ ++++++++|+|+||+++++|+|+|||+||||||
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyItAs 84 (429)
T 3dl8_G 5 LKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISAS 84 (429)
T ss_dssp ---CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHHH
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHHHHH
Confidence 567786 69999999999999999999999999999987754332 357899999999999999999999999999999
Q ss_pred HHHHHHhhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cccccchhHHHHHHHHHHH
Q 009193 196 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRP--------YVNDFSTDWVLTSVTLLTL 267 (540)
Q Consensus 196 II~QLL~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~--------~~~~~~~~~~~~ivl~Lva 267 (540)
||||||+.++|+++|++|||||+||+|+|++|||+|+++|++||.+++..+.. ...+.+..++++++++|++
T Consensus 85 II~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~a 164 (429)
T 3dl8_G 85 IMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVA 164 (429)
T ss_dssp HHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHHH
Confidence 99999999999999999779999999999999999999999999999876643 1223445567788899999
Q ss_pred HHHHHHHHhHhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHhheeeccEEeeee
Q 009193 268 GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGNYIGLATIIISFILLVLGIVYVQEAERKIPI 346 (540)
Q Consensus 268 Gs~~l~WL~E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~-~~~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI 346 (540)
|++++|||||+|||||+|||+|++|++||++++|..+.+.+.... .+.++..+++.+++++++++++||+|++||||||
T Consensus 165 Gt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~g~~~~~~~l~~l~~~l~vi~~vV~~~~~~rrIPv 244 (429)
T 3dl8_G 165 GTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTLLLIIALIIAIIVGIVYVQEAERRIPI 244 (429)
T ss_dssp HHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSCSSSCTHHHHHHHHHHHHHHHHHTCSCCCCCCCCC
T ss_pred HHHHHHHHHHHHhhcCcCcchHHHHHHHHHHHHHHHHHhHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHheeeEEEEEE
Confidence 999999999999999999999999999999999987544321110 0112444556666777888999999999999999
Q ss_pred eeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhChhHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 009193 347 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNY 426 (540)
Q Consensus 347 ~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~~~l~~~~~~~~~~g~~y~~iy~~lii~Fs~ 426 (540)
||+||..||+.+.++++|+|+|+|++||||+|||++++++|++++++++++|.+....++++++++|.++|++++++|+|
T Consensus 245 qyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs~ 324 (429)
T 3dl8_G 245 QYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPGAIFYNFLYVTFIVFFTY 324 (429)
T ss_dssp BCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCSSCCCCTTTTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred EEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 99999989988888999999999999999999999999999999998754444444455677788999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHH
Q 009193 427 YYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLI 506 (540)
Q Consensus 427 fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI 506 (540)
||+++++||||+||||||||+||||+|||++|+|||+|+++|+|++||+|++++|++|++++..++.+ + .+||||+||
T Consensus 325 fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~-~-~~gGTslLI 402 (429)
T 3dl8_G 325 FYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWFNIP-F-YFGGTTALI 402 (429)
T ss_dssp HHHTCTTHHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCS-C-CCSTHHHHH
T ss_pred HHHHHccCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCC-c-cccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999987655654 2 379999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCc
Q 009193 507 LVGCATDTARKVQAEIISQKYKNI 530 (540)
Q Consensus 507 ~Vgv~ldt~~qI~a~l~~~~Y~~~ 530 (540)
+|||++|++||+|+++++||||++
T Consensus 403 ~Vgv~l~~~~qi~s~l~~~~Y~g~ 426 (429)
T 3dl8_G 403 VVGVALDTFRQIETYLIQKKYKSY 426 (429)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997
No 3
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.3e-102 Score=832.13 Aligned_cols=403 Identities=34% Similarity=0.604 Sum_probs=348.4
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhccc-----c--cchHHHHHhhcCCCCcccceeecCchH
Q 009193 119 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLD-----Q--NSLLSTLDSFSGGGIGRLGICSLGIVP 190 (540)
Q Consensus 119 ~~~~~k-~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~-----~--~~~l~~l~~~sGG~~~~~SLfsLGI~P 190 (540)
+.++|| +++|+|++||++++++||+|+|||+||+|.+++++.++ + +++++++|+|+||+++++|+|+|||+|
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI~P 84 (431)
T 3din_C 5 FKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVTP 84 (431)
T ss_dssp ---CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHHH
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHhhHH
Confidence 567776 69999999999999999999999999999987654332 2 479999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----c-cccc-hhHHHHHHHH
Q 009193 191 FINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY----V-NDFS-TDWVLTSVTL 264 (540)
Q Consensus 191 yItASII~QLL~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~----~-~~~~-~~~~~~ivl~ 264 (540)
|||||||||||+.++|+++|++| |||+||+|+|++|||+|+++|++||.+++..+... . .+.+ ...+++++++
T Consensus 85 yItAsII~QLL~~~iP~l~~l~k-ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 163 (431)
T 3din_C 85 YITASIILQLLASVMPSLKEMLR-EGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMS 163 (431)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCSC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHHHH
Confidence 99999999999999999999997 99999999999999999999999999998765321 1 2333 4567788899
Q ss_pred HHHHHHHHHHHhHhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhheeeccEEee
Q 009193 265 LTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKI 344 (540)
Q Consensus 265 LvaGs~~l~WL~E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~~~~~~~~~l~~l~~~liiv~~iV~l~~aerrI 344 (540)
|++|++++|||||+|||||+|||+|++|++||++++|..+.+.+. .+.++..+++.+++++++++++||+|++||||
T Consensus 164 L~aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~---~~~~~~~~l~~l~~~l~vi~~vV~~~~~~rrI 240 (431)
T 3din_C 164 MLAGTMFLLWLGERITEKGIGNGISILIFAGIVARYPSYIRQAYL---GGLNLLEWIFLIAVALITIFGIILVQQAERRI 240 (431)
T ss_dssp HHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHSTTSSSCCSS---CCSCTHHHHHHHHHHHHHHHHHTTTCCBCCCC
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHhheeeEEEE
Confidence 999999999999999999999999999999999999987543221 12234455566667778889999999999999
Q ss_pred eeeeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhChhHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 009193 345 PINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFF 424 (540)
Q Consensus 345 PI~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~~~l~~~~~~~~~~g~~y~~iy~~lii~F 424 (540)
||||++|..||+.+.++++|+|+|+||+||||+|||++++++|+++++++++.| ...++++++++|.++|++++++|
T Consensus 241 Pvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~---~~~~~~~~~~~y~~~y~~lii~F 317 (431)
T 3din_C 241 TIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITNNET---LKNLFRAGGFLYLLIYGLLVFFF 317 (431)
T ss_dssp CCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSSTTCC---CCCCSSTTHHHHHHHHHHHHHHH
T ss_pred EEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHcchHH---HHHHcCCCcHHHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999998764322 12345677789999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchh
Q 009193 425 NYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSV 504 (540)
Q Consensus 425 s~fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTsl 504 (540)
+|||+++++||||+||||||||+||||+|||++|+|||+|+++|+|++||+|++++|++|++++..++.+ + .+||||+
T Consensus 318 s~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~-~-~~gGTsl 395 (431)
T 3din_C 318 TYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAIKVN-V-WIGGTSA 395 (431)
T ss_dssp HHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCS-C-CTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCC-c-cccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999987655654 2 4799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCc
Q 009193 505 LILVGCATDTARKVQAEIISQKYKNI 530 (540)
Q Consensus 505 LI~Vgv~ldt~~qI~a~l~~~~Y~~~ 530 (540)
||+|||++|++||+|++++++||+++
T Consensus 396 LI~Vgv~l~~~~qi~s~~~~~~Y~g~ 421 (431)
T 3din_C 396 LIAVGVALDIIQQMETHMVMRHYEGF 421 (431)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999998
No 4
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=8.1e-103 Score=834.42 Aligned_cols=403 Identities=33% Similarity=0.631 Sum_probs=354.7
Q ss_pred CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhccc--ccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHh
Q 009193 125 GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 202 (540)
Q Consensus 125 ~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~--~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~ 202 (540)
+++|+|++||++++++||+|+|||+||+|.+++.+..+ .+++++++|+|+||+++++|+|+|||+||||||||||||+
T Consensus 10 ~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QLL~ 89 (435)
T 3j01_A 10 GELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLT 89 (435)
T ss_dssp CSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSCSCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999987654332 2368999999999999999999999999999999999999
Q ss_pred hhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cccccchhHHHHHHHHHHHHHHHHHHHh
Q 009193 203 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRP------YVNDFSTDWVLTSVTLLTLGSAFTTYIG 276 (540)
Q Consensus 203 ~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~------~~~~~~~~~~~~ivl~LvaGs~~l~WL~ 276 (540)
.++|+++|++| |||+||+|+|++|||+|+++|++||.+++..+.. ...+.+..++++++++|++|++++||||
T Consensus 90 ~~ip~l~~l~k-ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~ 168 (435)
T 3j01_A 90 VVHPTLAEIKK-EGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLG 168 (435)
T ss_dssp HHCSSSSSCSC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 9999999999999999999999999999877642 1223343455678899999999999999
Q ss_pred HhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHhheeeccEEeeeeeeccccccc
Q 009193 277 ERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSR 355 (540)
Q Consensus 277 E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~-~~~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI~y~~r~~g~ 355 (540)
|+|||||+|||+|++|++||++++|..+.+.++... .+.++..+++.+++++++++++||+|++||||||||+||..||
T Consensus 169 E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~ 248 (435)
T 3j01_A 169 EQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGR 248 (435)
T ss_dssp HHSTTSCCSSSHHHHHHHHHHHHSSTTSSSCCCSSSSTTSSSHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCCCCSSC
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhheeEEEEEEEehhhhccc
Confidence 999999999999999999999999987654332111 1123344455566777788899999999999999999999999
Q ss_pred cCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhChh----HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHh
Q 009193 356 SGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA----ALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFL 431 (540)
Q Consensus 356 ~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~~----~l~~~~~~~~~~g~~y~~iy~~lii~Fs~fys~i 431 (540)
+.+.++++|+|+|+|+|||||+|||++++++|++++++++++ |......++++++++|.++|++++++|+|||+++
T Consensus 249 ~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~lii~F~~fyt~i 328 (435)
T 3j01_A 249 RVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTAL 328 (435)
T ss_dssp CCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSCCCSSCCSSSSCCCCSSGGGGTHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999976422 3333334567788999999999999999999999
Q ss_pred cCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHHHHHHH
Q 009193 432 QLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCA 511 (540)
Q Consensus 432 ~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ 511 (540)
++||||+||||||||+||||+|||++|+|||+|+++|+|++||+|++++|++|++++..++.+ + .+||||+||+|||+
T Consensus 329 ~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~l~~~~~~~-~-~~gGTslLI~VgV~ 406 (435)
T 3j01_A 329 VFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVP-F-YFGGTSLLIVVVVI 406 (435)
T ss_dssp SSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHHHHHHHHTTSCCSSS-S-SSCCHHHHHTHHHH
T ss_pred ccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-e-ecccHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987555554 2 37999999999999
Q ss_pred HHHHHHHHHHHHHccCCCc
Q 009193 512 TDTARKVQAEIISQKYKNI 530 (540)
Q Consensus 512 ldt~~qI~a~l~~~~Y~~~ 530 (540)
+||+||||++++++|||++
T Consensus 407 ldt~~qi~s~l~~~~Y~g~ 425 (435)
T 3j01_A 407 MDFMAQVQTLMMSSQYESA 425 (435)
T ss_dssp HHHHHHHHHHTSCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998
No 5
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=1.8e-92 Score=755.00 Aligned_cols=381 Identities=19% Similarity=0.204 Sum_probs=302.5
Q ss_pred cCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh
Q 009193 124 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 203 (540)
Q Consensus 124 k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~~ 203 (540)
++++|+|++||++++++||+|+|||+||+|.++. ++++++|+|+|+ +++|+|+|||+||||||||||||+.
T Consensus 20 ~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~-------~~~~~~~~~~a~--~~~sifaLGI~PyItAsII~QLL~g 90 (436)
T 1rh5_A 20 EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-------AIFEFWQTITAS--RIGTLITLGIGPIVTAGIIMQLLVG 90 (436)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-------SCCTTHHHHHTC--CTTBTTTTTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-------HHHHHHHHhhcc--ccchHHHHccHHHHHHHHHHHHHhh
Confidence 5799999999999999999999999999998643 467788888844 6999999999999999999999964
Q ss_pred hchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHhHhhhccc
Q 009193 204 INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLK 283 (540)
Q Consensus 204 ~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~It~~G 283 (540)
-++.+++| |||+||+|+|++|||+|+++|++||++++... .+ .+.+..++++++++|++|++++|||||+|||||
T Consensus 91 --~~~i~l~k-ege~gr~ki~~~tR~lti~la~iQa~~~~~~g-~~-~~~~~~~~~~~vl~L~~Gt~~lmwL~E~It~~G 165 (436)
T 1rh5_A 91 --SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFVGAG-AF-GILTPLLAFLVIIQIAFGSIILIYLDEIVSKYG 165 (436)
T ss_dssp --HTTSCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred --Cceeeecc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 13337775 99999999999999999999999999998762 12 234445567888999999999999999999999
Q ss_pred CcCcchHHHHHHHhhhhhHHHHH-------HHHHHhhc-CchhHHHHHHHHHHHHHHHhheeeccEEeeeeeeccccccc
Q 009193 284 LGNGTSLLIFTSIISYLPASFGR-------TVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSR 355 (540)
Q Consensus 284 IGnGiSLiI~~gIis~lP~~i~~-------~~~~~~~~-~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI~y~~r~~g~ 355 (540)
+|||+|++|++||++++|..+.+ .++..... .+... +..+++++++++++||+|++||||||||++ .+
T Consensus 166 iGnGiSLiI~~gI~~~lp~~~~~~~G~i~~~~~~~~~~~~~~~~-l~~l~~~l~v~~~vV~~~~~~rrIPvqyak-~~-- 241 (436)
T 1rh5_A 166 IGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEY-IAPIIGTIIVFLMVVYAECMRVEIPLAHGR-IK-- 241 (436)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGG-THHHHHHHHHHHHHHHHTTCEEEEECCCSS-ST--
T ss_pred cccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHhhcceEEEEEEEecc-cC--
Confidence 99999999999999999987766 55432221 12333 444556677788999999999999999976 43
Q ss_pred cCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhCh---hHHHHH--------------------HHhcCCCC-c
Q 009193 356 SGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---AALKKA--------------------AVALNPGG-S 411 (540)
Q Consensus 356 ~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~---~~l~~~--------------------~~~~~~~g-~ 411 (540)
++++|+|+|+|++||||+|||++++++|+++++++++ .|++.+ ..++++.+ +
T Consensus 242 ----g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~g~~~~~~~~~gl~yyl~pp~~~~~~~~~p~~~~ 317 (436)
T 1rh5_A 242 ----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAI 317 (436)
T ss_dssp ----TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCSCHHHHH
T ss_pred ----CccceeeeecccccchHHHHHHHHHHHHHHHHHHhcccCcchhhhcccccccccchhhcCChhHHHHHHhCCccch
Confidence 4799999999999999999999999999999987631 132110 11122333 6
Q ss_pred chHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHcCCccccccCCch-hHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 009193 412 FYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKS-TAAFLKTVLSRISVLGSVFLAILAAGPAVIEQ 489 (540)
Q Consensus 412 ~y~~iy~~lii~Fs~fys~i-~~nPkdiAe~Lkk~G~~IpGiRPG~~-T~~yL~kvl~rit~iGaifL~lia~lP~ll~~ 489 (540)
+|..+|++++++|+|||+++ ++||||+||||||||++|||+|||++ |+|||+|+++|+|++||+|++++|++|+++.
T Consensus 318 ~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~- 396 (436)
T 1rh5_A 318 VYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIG- 396 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88899999999999999999 89999999999999999999999999 7999999999999999999999999999963
Q ss_pred hcccccccccccchhHHHHHHHHHHHHHHHHHHHHccCCCc-cccc
Q 009193 490 TTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNI-EFYD 534 (540)
Q Consensus 490 ~~~~~~~~~~gGTslLI~Vgv~ldt~~qI~a~l~~~~Y~~~-~~~~ 534 (540)
.. .||||+||+|||++|++||+|+++.+|+|+.+ +|+.
T Consensus 397 -----~~--~gGTslLI~VgV~~~~~~qi~~~~~~~~Y~~l~~~~g 435 (436)
T 1rh5_A 397 -----AL--GGGTGVLLTVSIVYRMYEQLLRERTSELHPAIAKLLN 435 (436)
T ss_dssp -----CT--TCSHHHHHHHHHHHHHHHHHHTTCC------------
T ss_pred -----Hh--cCchhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHcc
Confidence 12 28999999999999999999999999999976 5654
No 6
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=1.9e-91 Score=754.53 Aligned_cols=384 Identities=21% Similarity=0.294 Sum_probs=275.4
Q ss_pred cCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh
Q 009193 124 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 203 (540)
Q Consensus 124 k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~~ 203 (540)
|+++|+|++||++++++||+|++||+||+|.+. .++++++|+++||+ ++|+|+|||+||||||||||||+.
T Consensus 23 ~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~-------~~~~~~l~~~~Gg~--~~SifaLGI~PyITASII~QLL~~ 93 (482)
T 3mp7_A 23 RVPLRERFMWTGVALILYYVLAEIPVYGIPERI-------QDYFQFLRVVLAGR--NGSILTLGIGPIVTAGIILQLLVG 93 (482)
T ss_dssp ---CTTTHHHHHHHHHHHHHHHHSBCTTCCSSC-------CCSCSSTTTTTCSC--TTBTTSSTTHHHHHHHHHTTC---
T ss_pred cccHHHHHHHHHHHHHHHHHHhhCCCCCcCccc-------ccHHHHHHHhcCCC--cccHHHHhhHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999752 36788999999995 899999999999999999999997
Q ss_pred hchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 009193 204 INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVN--DFSTDWVLTSVTLLTLGSAFTTYIGERISD 281 (540)
Q Consensus 204 ~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~--~~~~~~~~~ivl~LvaGs~~l~WL~E~It~ 281 (540)
.+++|++| |||+||+|+|++|||+|+++|++||.+++.++..... ..+...+++++++|++|++++|||||+|||
T Consensus 94 --~~l~~l~k-ege~gR~k~~~~tR~lti~la~iQa~~~v~~~~~~~~~~~~~~~~~~~ivl~L~aGt~~lmwL~E~It~ 170 (482)
T 3mp7_A 94 --SEIIKLDL-ANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK 170 (482)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHSSSSSCC------CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48999986 8999999999999999999999999999987542111 122345678889999999999999999999
Q ss_pred ccCcCcchHHHHHHHhhhhhHHHHHHHH----------------------HHhhcCch---h----H--HHHHHHHHHHH
Q 009193 282 LKLGNGTSLLIFTSIISYLPASFGRTVA----------------------EAFQDGNY---I----G--LATIIISFILL 330 (540)
Q Consensus 282 ~GIGnGiSLiI~~gIis~lP~~i~~~~~----------------------~~~~~~~~---~----~--~l~~l~~~lii 330 (540)
||+|||+|+||++||++++|..+.+.+. ....++.. . + .++.+++++++
T Consensus 171 ~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~l~~~~~~~lp~~~l~~l~~~l~v 250 (482)
T 3mp7_A 171 WGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAPDMLSVVATIVV 250 (482)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHHCCSCSSCCCSSSSCCHHHHHHHHHH
T ss_pred cCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhcchhhHHHhhccchhHHHHHHHHHHH
Confidence 9999999999999999999987543210 00001100 0 0 24445566777
Q ss_pred HHHhheeeccEEeeeeeeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhCh---hHHHH------
Q 009193 331 VLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---AALKK------ 401 (540)
Q Consensus 331 v~~iV~l~~aerrIPI~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~---~~l~~------ 401 (540)
++++||+|++||||||||++ .+ +++|+|+|+|||||||+|||+|++++|+++++++.+ +|++.
T Consensus 251 ~~~vV~~q~~~rrIPvqyak-~~-------~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~l~~~~~~~~ 322 (482)
T 3mp7_A 251 FFIVVYFESMRVEIPLGYRG-VT-------VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRLGHPWLGRFDPTTG 322 (482)
T ss_dssp HHHHHHHHHCCEEC--------------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTTSCCSSBCCCCTTS
T ss_pred HHHhheeEeeEEEEEEEecc-cc-------ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhccchhhhhhccccc
Confidence 88999999999999999975 22 689999999999999999999999999999987532 12211
Q ss_pred -----HHHhcCCC--------C----cchHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHcCCccccccCCch-hHHHH
Q 009193 402 -----AAVALNPG--------G----SFYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKS-TAAFL 462 (540)
Q Consensus 402 -----~~~~~~~~--------g----~~y~~iy~~lii~Fs~fys~i-~~nPkdiAe~Lkk~G~~IpGiRPG~~-T~~yL 462 (540)
...++++. . ++|..+|+++|++|+|||+++ ++||||+||||||||++|||+|||++ |+|||
T Consensus 323 ~~~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~diA~nlkk~G~~IpGiRpG~~tt~~yL 402 (482)
T 3mp7_A 323 SPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVL 402 (482)
T ss_dssp CCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGCCC--------CCTTTTTTSTTCC--
T ss_pred ccchhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCcCCCchhHHHHH
Confidence 01122221 1 258889999999999999999 99999999999999999999999997 79999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHccCCCc-ccccc
Q 009193 463 KTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNI-EFYDI 535 (540)
Q Consensus 463 ~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ldt~~qI~a~l~~~~Y~~~-~~~~~ 535 (540)
+|+++|+|++||+|++++|++|++++ .. .||||+||+|||++|++||+++++.+++|+++ +++..
T Consensus 403 ~~vi~rit~~Ga~~L~~iavlp~~l~------~~--ggGTslLI~VgV~~~~~~qi~s~~~~~~Y~~l~~~~g~ 468 (482)
T 3mp7_A 403 QRYIPYVTFWGSLTVALIAVLADFLG------AL--GTGTGILLTVGILYRFYEEIAREQITEMFPALRKLFGA 468 (482)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHT------CS--SCSHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHh------cc--CCceeeeeeHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 99999999999999999999999974 22 28999999999999999999999999999998 56544
No 7
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=5.1e-87 Score=721.38 Aligned_cols=376 Identities=16% Similarity=0.168 Sum_probs=313.9
Q ss_pred cCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh
Q 009193 124 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 203 (540)
Q Consensus 124 k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~~ 203 (540)
|+++|+|++||++++++||+ +|||+||+|.+++ .+.+++++++|+|+|+ +++|+|+|||+||||||||||||+.
T Consensus 26 ~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~---~~~~~~~~~~~~~~a~--~~~sifaLGI~PyItASII~QLL~g 99 (490)
T 2ww9_A 26 KLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATT---PNVNDPIYFLRGVFGC--EPRTLLEFGLFPNISSGLILQLLAG 99 (490)
T ss_dssp CCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTT---TCSSCCCTTTHHHHTC--CSSSTTSSTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHH---hcccCHHHHHHHHHcc--cccHHHHHhhHHHHHHHHHHHHHhh
Confidence 57999999999999999999 9999999999865 2235688899999854 5899999999999999999999964
Q ss_pred --hchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 009193 204 --INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISD 281 (540)
Q Consensus 204 --~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~It~ 281 (540)
++| ++| |||+||+|+|++|||+|+++|++||++++.++. +..+.+..++++++++|++|++++|||||+|||
T Consensus 100 ~~iip----l~k-ege~gR~k~~~~tR~lti~la~iQa~~~~~~~~-~~~~~~~~~~~~ivl~L~~Gt~~lmwLgE~It~ 173 (490)
T 2ww9_A 100 LKVIK----VNF-KIQSDRELFQSLTKVFAIVQYVILTNIFIFAGY-FGDDLSVVQIGLINFQLVGAGIFTTLLAEVIDK 173 (490)
T ss_dssp HTSSC----CCT-TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ccccc----ccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444 665 999999999999999999999999999988652 223444455678889999999999999999999
Q ss_pred -ccCcCcchHHHHHHHhhhhhHHHH--------------------HHHHHH-hhc----C---chhH-----HHHHHHHH
Q 009193 282 -LKLGNGTSLLIFTSIISYLPASFG--------------------RTVAEA-FQD----G---NYIG-----LATIIISF 327 (540)
Q Consensus 282 -~GIGnGiSLiI~~gIis~lP~~i~--------------------~~~~~~-~~~----~---~~~~-----~l~~l~~~ 327 (540)
||+|||+||||++||++++|..+. +.++.. .+. + +... .++.++++
T Consensus 174 G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~~~~r~~lp~l~~l~~~ 253 (490)
T 2ww9_A 174 GFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAFNRDYLPNLTTTIIV 253 (490)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCCCSSSSCCSHHHHHHH
T ss_pred ccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhhHHhhccccHHHHHHHH
Confidence 999999999999999999998754 333332 111 1 1111 24455566
Q ss_pred HHHHHHhheeeccEEeeeeeeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHH----hhC----h---
Q 009193 328 ILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR----FTG----I--- 396 (540)
Q Consensus 328 liiv~~iV~l~~aerrIPI~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~----~~~----~--- 396 (540)
+++++++||+|++||||||||+|| + ++++|+|+|+||+||||+|||++++++|+++++ +++ +
T Consensus 254 l~vi~~vV~~q~~~rrIPIqyak~-~------g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~~~~~~~~~~ 326 (490)
T 2ww9_A 254 LAIAIIVCYLQSVRVELPIRSTRA-R------GTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHII 326 (490)
T ss_dssp HHHHHHHHHHTTCCEECCCBCSSS-S------SBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCCCCSSS
T ss_pred HHHHHHHheeeeeEEEEEEEEccc-C------CcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Confidence 777889999999999999999865 2 478999999999999999999999999988887 432 1
Q ss_pred -h----HH---------HHHHHhcCC--------CC-cc----hHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHcCCc
Q 009193 397 -A----AL---------KKAAVALNP--------GG-SF----YLPTNILLIAFFNYYYTFLQ-LDPDDVSEQLKRQGAS 448 (540)
Q Consensus 397 -~----~l---------~~~~~~~~~--------~g-~~----y~~iy~~lii~Fs~fys~i~-~nPkdiAe~Lkk~G~~ 448 (540)
+ |. +....++++ +. ++ |.++|+++|++|+|||+++. +||||+||||||||++
T Consensus 327 ~~~lg~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~lii~Fs~fy~~i~g~np~dvA~nLkk~G~~ 406 (490)
T 2ww9_A 327 CKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGIT 406 (490)
T ss_dssp CTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHT
T ss_pred cccccchhccccccchhHHHHHHhCCccchhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCc
Confidence 1 11 111122333 33 55 88999999999999999996 9999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHccC
Q 009193 449 IPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKY 527 (540)
Q Consensus 449 IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ldt~~qI~a~l~~~~Y 527 (540)
|||+||| +|+|||+|+++|+|++||+|++++|++|+++. .. .||||+||+|||++|++||++++...+.+
T Consensus 407 IpGiRpG-~T~~yL~~vi~rit~~Ga~~L~~lavlp~~l~------~~--ggGTslLI~VgV~~~~~~qi~~e~~~~g~ 476 (490)
T 2ww9_A 407 LMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLG------LK--GKAAGIVVGIAGGFSLLEVITIEYQQSGG 476 (490)
T ss_dssp SSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CC--SSHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hc--CcHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999 99999999999999999999999999999963 22 28999999999999999999999877644
No 8
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=1.7e-83 Score=692.21 Aligned_cols=370 Identities=19% Similarity=0.178 Sum_probs=309.1
Q ss_pred hcCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHH-
Q 009193 123 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLL- 201 (540)
Q Consensus 123 ~k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL- 201 (540)
.|+++|+|++||++++++||+|+|||+||+|.++. .++++++.+.| +.+++|+|+|||+||||||||||||
T Consensus 24 ~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~-----~~~~~~~~~~f---a~~~~SifaLGI~PyItASII~QLL~ 95 (476)
T 2wwb_A 24 RKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDS-----ADPFYWMRVIL---ASNRGTLMELGISPIVTSGLIMQLLA 95 (476)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTC-----SCCCHHHHHHH---CSSCSSSCSSSSTHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhc-----cccHHHHHHHH---ccccccHHHHhhHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999998752 24578888877 4469999999999999999999999
Q ss_pred -hhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccchhHHHHHHHHHHHHHHHHHHHhHhh
Q 009193 202 -AQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVL-YLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERI 279 (540)
Q Consensus 202 -~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~-~l~~~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~I 279 (540)
+.++|.+++++ ||+|+|++|||+|+++|++||++++. .+.....+.+..++++++++|++|++++|||||+|
T Consensus 96 g~~iip~~~~l~------gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~I 169 (476)
T 2wwb_A 96 GAKIIEVGDTPK------DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELL 169 (476)
T ss_dssp HHCCCSCCSSSS------CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccccchhhc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788877663 79999999999999999999999887 43221233444456788899999999999999999
Q ss_pred hc-ccCcCcchHHHHHHHhhhh------hH------------HHHHHHHHHh-hc------------CchhHHHHHHHHH
Q 009193 280 SD-LKLGNGTSLLIFTSIISYL------PA------------SFGRTVAEAF-QD------------GNYIGLATIIISF 327 (540)
Q Consensus 280 t~-~GIGnGiSLiI~~gIis~l------P~------------~i~~~~~~~~-~~------------~~~~~~l~~l~~~ 327 (540)
|| ||+|||+|++|++||++++ |. .+.+.++... .. .+..+ +..++++
T Consensus 170 t~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~~-~~~ll~~ 248 (476)
T 2wwb_A 170 QKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPN-LMNLIAT 248 (476)
T ss_dssp HTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHHH-HHHHHHH
T ss_pred hccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccch-HHHHHHH
Confidence 99 9999999999999999999 76 4433333221 11 22222 3334455
Q ss_pred HHHHHHhheeeccEEeeeeeeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhh----C-hh-----
Q 009193 328 ILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT----G-IA----- 397 (540)
Q Consensus 328 liiv~~iV~l~~aerrIPI~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~----~-~~----- 397 (540)
+++++++||+|++||||||||++ .+ ++++|+|+|+||+||||+|||++++++|+++++++ + +.
T Consensus 249 ~~v~~~vV~~q~~~rrIPv~yak-~~------g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l 321 (476)
T 2wwb_A 249 IFVFAVVIYFQGFRVDLPIKSAR-YR------GQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLL 321 (476)
T ss_dssp HHHHHHHHHHHHCCBCCCCCBCS-SS------SBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH
T ss_pred HHHHhheeEEEEEEEEEEEEecc-cC------CccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhh
Confidence 77788899999999999999976 43 47899999999999999999999999999999876 2 11
Q ss_pred --HHHH-------------HHHhcCC--------CCcchHHHHHHHHHHHHHHHH----Hhc-CCHHHHHHHHHHcCCcc
Q 009193 398 --ALKK-------------AAVALNP--------GGSFYLPTNILLIAFFNYYYT----FLQ-LDPDDVSEQLKRQGASI 449 (540)
Q Consensus 398 --~l~~-------------~~~~~~~--------~g~~y~~iy~~lii~Fs~fys----~i~-~nPkdiAe~Lkk~G~~I 449 (540)
|.+. ...++++ +.++|.++|++++++|+|||+ ++. +||||+||||||||++|
T Consensus 322 g~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~I 401 (476)
T 2wwb_A 322 GTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVM 401 (476)
T ss_dssp CSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTT
T ss_pred hhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 2111 2334555 568899999999999999999 775 99999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 009193 450 PLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEII 523 (540)
Q Consensus 450 pGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ldt~~qI~a~l~ 523 (540)
||+|| ++|+|||+|+++|+|++||+|++++|++|+++. .. +||||+||+||++++++||++.+..
T Consensus 402 pGiRp-~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~------~~--~gGTslLI~Vgv~~~~~e~i~~e~~ 466 (476)
T 2wwb_A 402 RGHRE-TSMVHELNRYIPTAAAFGGLCIGALSVLADFLG------AI--GSGTGILLAVTIIYQYFEIFVKEQS 466 (476)
T ss_dssp CCCCT-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CS--SCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh--cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 899999999999999999999999999999963 22 6899999999999999999998765
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=55.91 E-value=8.1 Score=32.95 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=18.6
Q ss_pred cCCccccccCCchhHHHHHHHHH
Q 009193 445 QGASIPLVRPGKSTAAFLKTVLS 467 (540)
Q Consensus 445 ~G~~IpGiRPG~~T~~yL~kvl~ 467 (540)
....|||+||||.-...+++...
T Consensus 37 k~~~ipGFRkGKvP~~vi~k~yG 59 (109)
T 2nsc_A 37 QRVEIPGFRKGRIPKNVLKMKLG 59 (109)
T ss_dssp TTCCCTTSCTTCCCHHHHHHHHG
T ss_pred ccCCCCCcCCCCCCHHHHHHHHh
Confidence 35799999999977777777664
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=48.47 E-value=12 Score=32.42 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=19.0
Q ss_pred CCccccccCCchhHHHHHHHHHH
Q 009193 446 GASIPLVRPGKSTAAFLKTVLSR 468 (540)
Q Consensus 446 G~~IpGiRPG~~T~~yL~kvl~r 468 (540)
...|||+||||.-...+++....
T Consensus 41 ~v~ipGFRkGKvP~~vi~k~yG~ 63 (121)
T 1p9y_A 41 KVRIDGLRKGKVPMNIVAQRYGA 63 (121)
T ss_dssp TCCCTTSCTTCSCHHHHHHHHHH
T ss_pred hCccCCcCCCCCCHHHHHHHHHH
Confidence 57999999999888888877754
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=39.95 E-value=11 Score=32.36 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=19.5
Q ss_pred HHHHHcCCccccccCCchhHHHHHHHHH
Q 009193 440 EQLKRQGASIPLVRPGKSTAAFLKTVLS 467 (540)
Q Consensus 440 e~Lkk~G~~IpGiRPG~~T~~yL~kvl~ 467 (540)
++++| ...|||+|||+.-...+++...
T Consensus 32 ~~~~k-~~~ipGFRkGKvP~~vi~k~yG 58 (112)
T 2d3o_1 32 AGLAR-DVRVPGFRPGKAPRKVIENRVG 58 (112)
T ss_dssp HHHHT-TSCBTTBCTTCCCSTTHHHHTT
T ss_pred HHHHh-hCCCCCcCCCCCCHHHHHHHhC
Confidence 34433 4799999999977677776664
No 12
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=22.16 E-value=56 Score=33.86 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=19.3
Q ss_pred cCCccccccCCchhHHHHHHHHH
Q 009193 445 QGASIPLVRPGKSTAAFLKTVLS 467 (540)
Q Consensus 445 ~G~~IpGiRPG~~T~~yL~kvl~ 467 (540)
....|||+||||.-...+++...
T Consensus 40 k~~~ipGFRkGKvP~~~i~k~yG 62 (392)
T 1t11_A 40 KNRRFDGFRKGKVPMKMVAKMYG 62 (392)
T ss_dssp TTCCCTTSCSSCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHh
Confidence 36899999999988888887775
Done!