Query 009193
Match_columns 540
No_of_seqs 162 out of 1189
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 20:56:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009193.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009193hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5a_ f.41.1.1 (A:) Preprote 100.0 6.7E-86 4.9E-90 701.6 28.3 371 123-522 18-421 (422)
2 d1p9ya_ d.241.2.1 (A:) Trigger 58.5 3.7 0.00027 33.5 3.7 37 432-468 18-60 (117)
3 d1t11a2 d.241.2.1 (A:1-129) Tr 37.2 12 0.00087 30.6 3.7 24 445-468 37-60 (129)
4 d1zl8a1 a.194.1.1 (A:4-53) Lin 11.5 60 0.0044 22.4 2.1 23 207-230 12-34 (50)
5 d1y74a1 a.194.1.1 (A:17-73) Li 9.0 64 0.0047 22.8 1.6 24 207-231 13-36 (57)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 8.0 3E+02 0.022 26.1 7.0 19 432-450 23-41 (472)
7 d1rh5a_ f.41.1.1 (A:) Preprote 7.6 1.4E+02 0.01 28.7 4.1 36 267-304 379-417 (422)
8 d2f2ga1 a.132.1.3 (A:5-219) Se 5.4 2E+02 0.014 24.0 3.4 49 436-484 86-134 (215)
9 d1nkua_ a.96.1.4 (A:) 3-Methyl 5.0 2.1E+02 0.015 24.6 3.2 28 423-450 112-157 (187)
10 d2edua1 a.60.2.7 (A:8-98) KIF2 4.8 3.3E+02 0.024 20.3 4.0 50 187-237 40-90 (91)
No 1
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=6.7e-86 Score=701.64 Aligned_cols=371 Identities=19% Similarity=0.198 Sum_probs=294.5
Q ss_pred hcCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHh
Q 009193 123 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 202 (540)
Q Consensus 123 ~k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~ 202 (540)
.|.++|||++||++++++||+|+|||+||+|.++. +++.+++.++|++ +.|||+|||+||||||||||||+
T Consensus 18 ~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~-------~~~~~~~~~~a~~--~~Sif~LGI~PyItASIImQLL~ 88 (422)
T d1rh5a_ 18 KEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-------AIFEFWQTITASR--IGTLITLGIGPIVTAGIIMQLLV 88 (422)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-------SCCTTHHHHHTCC--TTBTTTTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCcc-------cHHHHHHHHhccc--cccHHHhChHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999987642 5667788888885 67999999999999999999997
Q ss_pred hhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 009193 203 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDL 282 (540)
Q Consensus 203 ~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~It~~ 282 (540)
. |+++++++ |||+||+|+|++|||+|+++|++||.+++..... .+.+..+.++++++|++|++++|||||+||||
T Consensus 89 ~--~~l~~~~~-~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~--~~~~~~~~~~iv~~L~aGt~~lmwL~E~It~~ 163 (422)
T d1rh5a_ 89 G--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAF--GILTPLLAFLVIIQIAFGSIILIYLDEIVSKY 163 (422)
T ss_dssp H--HTTSCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--hhHHHhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5 89999986 9999999999999999999999999998865432 23444556778899999999999999999999
Q ss_pred cCcCcchHHHHHHHhhhhhHHHHH-------HHHHHhhcCchhHHHHHHHHHHHHHHHhheeeccEEeeeeeeccccccc
Q 009193 283 KLGNGTSLLIFTSIISYLPASFGR-------TVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSR 355 (540)
Q Consensus 283 GIGnGiSLiI~~gIis~lP~~i~~-------~~~~~~~~~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI~y~~r~~g~ 355 (540)
|+|||+|++|++||++++|..... ..............+..++.++++++++||+|++|||||++|+++.
T Consensus 164 GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~i~~~vv~~~~~~~~IPv~~~~~~--- 240 (422)
T d1rh5a_ 164 GIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK--- 240 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGGTHHHHHHHHHHHHHHHHTTCEEEEECCCSSST---
T ss_pred CcccchHHHHHHHHHHHHHHhccchhHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc---
Confidence 999999999999999999754321 1111111111222233445566677889999999999999997542
Q ss_pred cCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhCh---h---------HHHHHHHhcC-C-----------CCc
Q 009193 356 SGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---A---------ALKKAAVALN-P-----------GGS 411 (540)
Q Consensus 356 ~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~---~---------~l~~~~~~~~-~-----------~g~ 411 (540)
++++|+|+|+|++|+||+|||++++++|+++++++.. + +.+.+..++. + +.+
T Consensus 241 ----~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~ 316 (422)
T d1rh5a_ 241 ----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAI 316 (422)
T ss_dssp ----TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCSCHHHHH
T ss_pred ----ccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhcccccccccCCCchHHHHHHHhCCcchhhccccCccchH
Confidence 3578999999999999999999999999999887521 0 1111112221 1 123
Q ss_pred chHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHcCCccccccCCchhHH-HHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 009193 412 FYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKSTAA-FLKTVLSRISVLGSVFLAILAAGPAVIEQ 489 (540)
Q Consensus 412 ~y~~iy~~lii~Fs~fys~i-~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~-yL~kvl~rit~iGaifL~lia~lP~ll~~ 489 (540)
+|.++|++++++|+|||+.+ ++||||+||||||||++|||+|||++|.+ ||+|+++|+|++||+|++++|++|++++
T Consensus 317 ~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~Ga~~l~~ia~~p~~l~- 395 (422)
T d1rh5a_ 317 VYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIG- 395 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 57788889999999999887 69999999999999999999999999965 6999999999999999999999999974
Q ss_pred hcccccccccccchhHHHHHHHHHHHHHHHHHH
Q 009193 490 TTHLTAFRGFAGTSVLILVGCATDTARKVQAEI 522 (540)
Q Consensus 490 ~~~~~~~~~~gGTslLI~Vgv~ldt~~qI~a~l 522 (540)
.+ +||||+||+|||++|++||+++|+
T Consensus 396 -----~~--~gGTslLI~V~v~l~~~~qi~~e~ 421 (422)
T d1rh5a_ 396 -----AL--GGGTGVLLTVSIVYRMYEQLLRER 421 (422)
T ss_dssp -----CT--TCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred -----Hh--cchHHHHHHHHHHHHHHHHHHHhh
Confidence 33 589999999999999999999864
No 2
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=58.48 E-value=3.7 Score=33.48 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHH------cCCccccccCCchhHHHHHHHHHH
Q 009193 432 QLDPDDVSEQLKR------QGASIPLVRPGKSTAAFLKTVLSR 468 (540)
Q Consensus 432 ~~nPkdiAe~Lkk------~G~~IpGiRPG~~T~~yL~kvl~r 468 (540)
.++++|+.+.+.+ ....|||+|||+.-...+++....
T Consensus 18 ~v~~~~v~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~yg~ 60 (117)
T d1p9ya_ 18 TIAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYGA 60 (117)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHhcCCCCCcCCCCccHHHHHHHHhH
Confidence 3455555554432 577999999999888887776653
No 3
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}
Probab=37.22 E-value=12 Score=30.64 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=18.9
Q ss_pred cCCccccccCCchhHHHHHHHHHH
Q 009193 445 QGASIPLVRPGKSTAAFLKTVLSR 468 (540)
Q Consensus 445 ~G~~IpGiRPG~~T~~yL~kvl~r 468 (540)
....|||+|||+.-..-+++....
T Consensus 37 k~~~ipGFRkGKvP~~ii~k~~~~ 60 (129)
T d1t11a2 37 KNRRFDGFRKGKVPMKMVAKMYGK 60 (129)
T ss_dssp TTCCCTTSCSSCCCHHHHHHHHHH
T ss_pred HhCCCCCCCCCCCcHHHHHHHhhh
Confidence 478999999999777777776543
No 4
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=11.48 E-value=60 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=18.8
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHH
Q 009193 207 KLQDLQKREGEAGRKKVLQYTRYA 230 (540)
Q Consensus 207 ~L~~l~k~ege~Grkki~~~tR~L 230 (540)
-|+++|+ .||.--.|++..||+|
T Consensus 12 Lle~Lq~-sgevp~~KL~aLqkVL 34 (50)
T d1zl8a1 12 LMEHVQK-TGEVNNAKLASLQQVL 34 (50)
T ss_dssp HHHHHGG-GSSSTHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCChHHHHHHHHHH
Confidence 4567886 8999899999998876
No 5
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.98 E-value=64 Score=22.76 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=19.2
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHH
Q 009193 207 KLQDLQKREGEAGRKKVLQYTRYAS 231 (540)
Q Consensus 207 ~L~~l~k~ege~Grkki~~~tR~Lt 231 (540)
-|+++|+ .||.--.|++..||+|-
T Consensus 13 Lle~LQ~-~gevp~~KL~aLqkVLq 36 (57)
T d1y74a1 13 LLERLQR-SGELPPQKLQALQRVLQ 36 (57)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCChHHHHHHHHHHH
Confidence 4567886 89988999999998763
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=8.04 E-value=3e+02 Score=26.08 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.9
Q ss_pred cCCHHHHHHHHHHcCCccc
Q 009193 432 QLDPDDVSEQLKRQGASIP 450 (540)
Q Consensus 432 ~~nPkdiAe~Lkk~G~~Ip 450 (540)
|++.+|++|.+++.|.=..
T Consensus 23 GLs~~ea~~r~~~~G~N~l 41 (472)
T d1wpga4 23 GLTPDQVKRHLEKYGHNEL 41 (472)
T ss_dssp CBCHHHHHHHHHHSCCSSC
T ss_pred CcCHHHHHHHHHhcCCCCC
Confidence 7899999999999995443
No 7
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.60 E-value=1.4e+02 Score=28.68 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=23.6
Q ss_pred HHHHHHHHH---hHhhhcccCcCcchHHHHHHHhhhhhHHH
Q 009193 267 LGSAFTTYI---GERISDLKLGNGTSLLIFTSIISYLPASF 304 (540)
Q Consensus 267 aGs~~l~WL---~E~It~~GIGnGiSLiI~~gIis~lP~~i 304 (540)
.|++++-.+ .|.+. .+|+|+|++|.++++-..-+++
T Consensus 379 ~Ga~~l~~ia~~p~~l~--~~~gGTslLI~V~v~l~~~~qi 417 (422)
T d1rh5a_ 379 MSSAFVGFLATIANFIG--ALGGGTGVLLTVSIVYRMYEQL 417 (422)
T ss_dssp HHHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHH
Confidence 455554444 44453 3457999999999987665554
No 8
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.35 E-value=2e+02 Score=24.00 Aligned_cols=49 Identities=8% Similarity=-0.009 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 009193 436 DDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGP 484 (540)
Q Consensus 436 kdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP 484 (540)
+.-.+.+++.|..+.+++|.+.|..|.+.......-=|.+.-++.|..|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~p~~~~y~~~l~~~~~~~~~~~~~l~al~p 134 (215)
T d2f2ga1 86 EWFKREGSKWDVDFSTVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWA 134 (215)
T ss_dssp HHHHHHHHHTTCCGGGCCCCHHHHHHHHHHHHTTSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCccHHhcccchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3444677888999999999999999998876543322444334444444
No 9
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=5.00 E-value=2.1e+02 Score=24.55 Aligned_cols=28 Identities=29% Similarity=0.679 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCH------------------HHHHHHHHHcCCccc
Q 009193 423 FFNYYYTFLQLDP------------------DDVSEQLKRQGASIP 450 (540)
Q Consensus 423 ~Fs~fys~i~~nP------------------kdiAe~Lkk~G~~Ip 450 (540)
|-.|+|.++.-.| +++|+.|||.|...-
T Consensus 112 f~~~lw~f~~~~p~~~~~~~~~~ip~~t~~s~~lsk~LKk~GfkFv 157 (187)
T d1nkua_ 112 FADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFV 157 (187)
T ss_dssp HHHHHHHHTTTCCEECCCSSGGGSCSCCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhcCCCCCcCCCccCHHHhhcCCHHHHHHHHHHHhcCCeec
Confidence 5678888885443 579999999986653
No 10
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.78 E-value=3.3e+02 Score=20.25 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHH-HhhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 009193 187 GIVPFINAQIVFQL-LAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIV 237 (540)
Q Consensus 187 GI~PyItASII~QL-L~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAii 237 (540)
||+|-....||-.= ..+-+..+++|.+ --..|.++++++.+...+-++..
T Consensus 40 gig~~~A~~II~yR~~~G~f~sledL~~-V~Gi~~k~~eki~k~~~l~~~~~ 90 (91)
T d2edua1 40 RIGPKKAQLIVGWRELHGPFSQVEDLER-VEGITGKQMESFLKANILGLAAG 90 (91)
T ss_dssp TCCHHHHHHHHHHHHHHCCCSSGGGGGG-STTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHhc-CCCCCHHHHHHHHHcCchhhccC
Confidence 67777766666333 2223667888875 43467889999998877776643
Done!