Query 009194
Match_columns 540
No_of_seqs 220 out of 2644
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 20:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 5.2E-32 1.8E-36 287.6 32.9 165 23-191 19-194 (606)
2 3t6q_A CD180 antigen; protein- 100.0 6.5E-31 2.2E-35 279.2 32.8 433 23-478 20-510 (606)
3 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-30 4.7E-35 276.7 31.5 444 39-527 13-555 (606)
4 2z63_A TOLL-like receptor 4, v 100.0 1.7E-30 5.7E-35 274.1 28.7 446 23-516 15-534 (570)
5 1ziw_A TOLL-like receptor 3; i 100.0 5E-29 1.7E-33 268.3 36.8 426 25-478 14-514 (680)
6 3t6q_A CD180 antigen; protein- 100.0 1.9E-29 6.5E-34 267.9 32.9 435 39-510 14-510 (606)
7 2z63_A TOLL-like receptor 4, v 100.0 7.2E-29 2.5E-33 261.6 29.1 444 39-528 9-529 (570)
8 3rgz_A Protein brassinosteroid 100.0 5.7E-29 1.9E-33 270.5 28.5 452 36-528 150-715 (768)
9 3rgz_A Protein brassinosteroid 100.0 8.6E-29 2.9E-33 269.1 29.4 424 36-479 99-549 (768)
10 2z81_A CD282 antigen, TOLL-lik 100.0 9.2E-29 3.2E-33 259.5 27.5 421 26-478 16-461 (549)
11 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-28 1.7E-32 253.9 30.4 442 35-514 48-511 (549)
12 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-27 5.8E-32 256.3 34.4 177 40-228 7-189 (680)
13 4ecn_A Leucine-rich repeat pro 100.0 7.4E-29 2.5E-33 268.2 22.5 397 37-479 323-838 (876)
14 4eco_A Uncharacterized protein 100.0 4E-29 1.4E-33 265.6 19.3 218 37-266 81-411 (636)
15 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-27 8.7E-32 260.2 33.1 166 22-191 11-187 (844)
16 1o6v_A Internalin A; bacterial 100.0 5.1E-27 1.8E-31 240.6 27.8 342 36-479 45-386 (466)
17 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-26 6E-31 253.5 30.2 171 40-222 7-186 (844)
18 1o6v_A Internalin A; bacterial 100.0 3.5E-26 1.2E-30 234.4 28.2 343 57-511 44-386 (466)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.5E-26 1.5E-30 237.3 29.3 431 40-512 3-480 (520)
20 4eco_A Uncharacterized protein 99.9 1.1E-26 3.7E-31 246.9 24.2 354 52-479 198-598 (636)
21 4ecn_A Leucine-rich repeat pro 99.9 2.9E-26 1E-30 247.9 25.9 352 47-454 435-839 (876)
22 4g8a_A TOLL-like receptor 4; l 99.9 3.8E-25 1.3E-29 236.2 30.8 454 23-511 39-578 (635)
23 2z7x_B TOLL-like receptor 1, v 99.9 3.2E-26 1.1E-30 238.4 21.8 419 28-480 13-480 (520)
24 3v47_A TOLL-like receptor 5B a 99.9 1.4E-25 4.8E-30 229.6 25.7 134 310-480 274-407 (455)
25 4fmz_A Internalin; leucine ric 99.9 2.4E-25 8.1E-30 219.4 24.0 303 35-405 42-344 (347)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-24 3.8E-29 228.8 26.1 431 39-512 33-509 (562)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-24 6.1E-29 227.2 24.4 419 26-480 42-509 (562)
28 4fmz_A Internalin; leucine ric 99.9 4.7E-24 1.6E-28 210.1 25.2 283 31-379 60-344 (347)
29 3o6n_A APL1; leucine-rich repe 99.9 2.3E-24 7.8E-29 215.8 21.9 303 57-404 43-349 (390)
30 3v47_A TOLL-like receptor 5B a 99.9 3.9E-24 1.3E-28 218.8 23.8 389 40-517 13-412 (455)
31 4g8a_A TOLL-like receptor 4; l 99.9 4.6E-23 1.6E-27 220.0 32.6 456 40-526 34-576 (635)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1E-23 3.5E-28 214.5 24.4 309 36-478 41-349 (457)
33 2id5_A Lingo-1, leucine rich r 99.9 6.4E-23 2.2E-27 211.0 25.2 312 40-405 14-331 (477)
34 3ogk_B Coronatine-insensitive 99.9 4.6E-25 1.6E-29 233.6 9.3 43 439-483 485-527 (592)
35 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-22 5.6E-27 205.6 27.2 291 34-409 61-353 (457)
36 3oja_B Anopheles plasmodium-re 99.9 2.6E-23 8.8E-28 219.6 21.9 304 57-405 49-356 (597)
37 3ogk_B Coronatine-insensitive 99.9 6.2E-25 2.1E-29 232.5 9.3 404 57-514 71-526 (592)
38 2id5_A Lingo-1, leucine rich r 99.9 1.3E-22 4.3E-27 208.9 25.5 304 24-379 20-331 (477)
39 1jl5_A Outer protein YOPM; leu 99.9 7.2E-23 2.5E-27 208.1 20.4 391 36-528 10-427 (454)
40 3o6n_A APL1; leucine-rich repe 99.9 1.5E-22 5E-27 202.7 22.2 304 36-383 44-353 (390)
41 2p1m_B Transport inhibitor res 99.9 1.4E-24 4.9E-29 229.9 0.9 407 36-480 65-518 (594)
42 3oja_B Anopheles plasmodium-re 99.9 9.6E-22 3.3E-26 207.6 22.3 301 36-379 50-356 (597)
43 2p1m_B Transport inhibitor res 99.9 5E-24 1.7E-28 225.7 2.8 420 39-512 45-518 (594)
44 1jl5_A Outer protein YOPM; leu 99.9 1.5E-20 5E-25 191.1 27.6 300 37-409 71-371 (454)
45 2ft3_A Biglycan; proteoglycan, 99.9 6.1E-21 2.1E-25 186.4 19.7 291 60-405 34-331 (332)
46 4fcg_A Uncharacterized protein 99.9 4.7E-21 1.6E-25 186.5 17.2 231 83-403 79-310 (328)
47 1xku_A Decorin; proteoglycan, 99.9 4.1E-20 1.4E-24 180.4 23.2 155 60-228 32-189 (330)
48 1xku_A Decorin; proteoglycan, 99.8 1.6E-19 5.5E-24 176.2 22.7 173 38-226 32-208 (330)
49 1z7x_W Ribonuclease inhibitor; 99.8 2.1E-22 7.1E-27 206.4 0.7 147 309-479 254-409 (461)
50 4fcg_A Uncharacterized protein 99.8 4.4E-20 1.5E-24 179.6 15.4 191 36-239 80-284 (328)
51 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-19 4E-24 173.3 17.3 181 35-226 30-217 (285)
52 1ogq_A PGIP-2, polygalacturona 99.8 5.6E-20 1.9E-24 177.8 14.8 246 37-355 50-306 (313)
53 2z80_A TOLL-like receptor 2, v 99.8 1.4E-19 4.8E-24 178.3 17.6 176 41-227 35-215 (353)
54 2ft3_A Biglycan; proteoglycan, 99.8 4E-19 1.4E-23 173.5 19.0 290 38-379 34-331 (332)
55 1ogq_A PGIP-2, polygalacturona 99.8 2E-19 6.7E-24 173.9 14.9 249 59-385 50-308 (313)
56 3zyj_A Leucine-rich repeat-con 99.8 1.6E-18 5.5E-23 176.1 22.0 172 39-223 45-220 (440)
57 2z66_A Variable lymphocyte rec 99.8 8.7E-19 3E-23 169.1 17.7 232 25-268 17-259 (306)
58 1z7x_W Ribonuclease inhibitor; 99.8 3.2E-21 1.1E-25 197.6 -0.0 362 37-409 3-412 (461)
59 2z80_A TOLL-like receptor 2, v 99.8 4.6E-19 1.6E-23 174.6 14.7 191 24-226 40-238 (353)
60 2z66_A Variable lymphocyte rec 99.8 1.3E-18 4.5E-23 167.8 16.9 176 40-226 10-191 (306)
61 3zyj_A Leucine-rich repeat-con 99.8 4.6E-18 1.6E-22 172.7 18.6 231 23-268 51-290 (440)
62 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-17 7.8E-22 172.8 24.2 261 35-384 38-299 (622)
63 3zyi_A Leucine-rich repeat-con 99.8 4.4E-18 1.5E-22 173.5 18.1 176 39-227 56-235 (452)
64 3zyi_A Leucine-rich repeat-con 99.8 5.4E-18 1.8E-22 172.8 18.6 231 23-268 62-301 (452)
65 1ozn_A Reticulon 4 receptor; N 99.8 6.6E-18 2.3E-22 161.1 17.8 193 39-243 13-212 (285)
66 1p9a_G Platelet glycoprotein I 99.8 2.2E-17 7.4E-22 157.5 18.0 191 36-239 9-202 (290)
67 1h6u_A Internalin H; cell adhe 99.8 3.6E-17 1.2E-21 157.6 19.6 187 36-242 40-227 (308)
68 2o6q_A Variable lymphocyte rec 99.8 2.9E-17 1E-21 155.2 18.6 180 37-228 16-199 (270)
69 3g06_A SSPH2 (leucine-rich rep 99.7 4.5E-17 1.5E-21 170.6 20.9 257 60-408 41-298 (622)
70 2z62_A TOLL-like receptor 4, v 99.7 2.1E-17 7.3E-22 156.8 15.4 182 35-228 26-218 (276)
71 3o53_A Protein LRIM1, AGAP0063 99.7 5.7E-19 2E-23 171.1 3.8 269 57-383 32-301 (317)
72 2o6q_A Variable lymphocyte rec 99.7 7.6E-17 2.6E-21 152.3 17.8 186 26-223 27-218 (270)
73 1h6u_A Internalin H; cell adhe 99.7 9.1E-17 3.1E-21 154.8 17.1 202 43-266 25-226 (308)
74 3o53_A Protein LRIM1, AGAP0063 99.7 5.8E-18 2E-22 164.0 8.3 288 62-409 13-301 (317)
75 2z62_A TOLL-like receptor 4, v 99.7 2.7E-16 9.2E-21 149.2 19.6 215 41-266 11-233 (276)
76 3rfs_A Internalin B, repeat mo 99.7 3.1E-16 1E-20 148.3 19.1 175 35-222 39-217 (272)
77 1h6t_A Internalin B; cell adhe 99.7 1.5E-16 5.3E-21 151.8 16.5 171 36-225 45-215 (291)
78 2xwt_C Thyrotropin receptor; s 99.7 5.2E-17 1.8E-21 150.5 12.6 199 27-239 23-233 (239)
79 1p9a_G Platelet glycoprotein I 99.7 2.7E-16 9.4E-21 149.9 16.2 183 26-223 21-208 (290)
80 3m19_A Variable lymphocyte rec 99.7 3.9E-16 1.3E-20 145.7 16.9 176 38-225 15-194 (251)
81 1wwl_A Monocyte differentiatio 99.7 6.8E-17 2.3E-21 156.1 11.7 81 84-164 94-184 (312)
82 3rfs_A Internalin B, repeat mo 99.7 1.3E-16 4.4E-21 150.9 12.5 180 31-228 57-241 (272)
83 2ast_B S-phase kinase-associat 99.7 2.4E-16 8.1E-21 154.2 10.7 89 309-411 220-309 (336)
84 3oja_A Leucine-rich immune mol 99.7 3.9E-16 1.3E-20 160.1 12.4 209 36-266 33-246 (487)
85 2xwt_C Thyrotropin receptor; s 99.7 5E-16 1.7E-20 143.9 11.9 166 49-228 23-198 (239)
86 1h6t_A Internalin B; cell adhe 99.6 2.4E-15 8.1E-20 143.5 16.5 184 39-242 26-210 (291)
87 1m9s_A Internalin B; cell inva 99.6 1.6E-15 5.6E-20 158.5 16.5 174 35-227 41-214 (605)
88 3m19_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 138.8 16.0 163 25-191 24-192 (251)
89 3oja_A Leucine-rich immune mol 99.6 6.9E-16 2.3E-20 158.2 11.3 240 57-350 32-272 (487)
90 1xeu_A Internalin C; cellular 99.6 6.7E-16 2.3E-20 144.9 9.8 172 35-226 17-188 (263)
91 1wwl_A Monocyte differentiatio 99.6 1.4E-15 4.7E-20 146.9 12.0 218 36-266 62-305 (312)
92 2ast_B S-phase kinase-associat 99.6 7.5E-16 2.6E-20 150.6 10.1 173 37-221 47-233 (336)
93 4glp_A Monocyte differentiatio 99.6 5.5E-16 1.9E-20 149.6 7.9 222 57-294 62-304 (310)
94 4ezg_A Putative uncharacterize 99.6 4E-15 1.4E-19 133.3 12.8 150 57-223 42-194 (197)
95 2o6s_A Variable lymphocyte rec 99.6 4.5E-15 1.5E-19 134.3 12.3 170 40-228 10-184 (208)
96 3e6j_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 132.4 15.1 149 39-191 21-172 (229)
97 4ezg_A Putative uncharacterize 99.6 1.5E-14 5.3E-19 129.5 13.9 146 82-240 41-189 (197)
98 4glp_A Monocyte differentiatio 99.6 4.8E-15 1.7E-19 142.9 11.1 220 36-266 63-303 (310)
99 1m9s_A Internalin B; cell inva 99.6 3.2E-15 1.1E-19 156.4 10.1 185 38-242 22-207 (605)
100 2v9t_B SLIT homolog 2 protein 99.6 2.1E-14 7.2E-19 130.9 13.5 148 40-191 14-165 (220)
101 2v70_A SLIT-2, SLIT homolog 2 99.6 2.4E-14 8.3E-19 130.5 13.7 149 40-191 14-166 (220)
102 4ay9_X Follicle-stimulating ho 99.5 1.2E-13 4.2E-18 135.4 17.5 238 88-403 12-255 (350)
103 1xeu_A Internalin C; cellular 99.5 5.4E-14 1.8E-18 131.9 14.2 147 35-191 39-185 (263)
104 3cvr_A Invasion plasmid antige 99.5 1.3E-13 4.4E-18 142.7 17.9 174 36-240 58-238 (571)
105 4ay9_X Follicle-stimulating ho 99.5 5.8E-14 2E-18 137.8 14.4 148 41-191 13-167 (350)
106 2ca6_A RAN GTPase-activating p 99.5 6E-15 2E-19 147.1 6.7 182 36-222 31-256 (386)
107 2xot_A Amphoterin-induced prot 99.5 6.3E-14 2.2E-18 138.1 11.8 172 40-223 21-202 (361)
108 2ell_A Acidic leucine-rich nuc 99.5 8.3E-14 2.8E-18 121.2 11.0 138 84-227 23-164 (168)
109 3goz_A Leucine-rich repeat-con 99.5 4.2E-14 1.4E-18 139.5 10.1 103 60-164 23-149 (362)
110 2xot_A Amphoterin-induced prot 99.5 8.8E-14 3E-18 137.1 12.3 155 62-227 21-180 (361)
111 3goz_A Leucine-rich repeat-con 99.5 3.9E-14 1.3E-18 139.7 9.6 186 35-227 20-242 (362)
112 2v9t_B SLIT homolog 2 protein 99.5 1.4E-13 4.7E-18 125.5 12.4 147 62-222 14-164 (220)
113 2o6s_A Variable lymphocyte rec 99.5 9.5E-14 3.2E-18 125.5 11.0 154 27-191 19-178 (208)
114 2ca6_A RAN GTPase-activating p 99.5 3.3E-14 1.1E-18 141.6 7.8 183 36-224 59-288 (386)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 5.5E-13 1.9E-17 121.4 14.2 148 62-223 14-166 (220)
116 3cvr_A Invasion plasmid antige 99.5 7.4E-13 2.5E-17 137.0 15.8 164 28-223 72-243 (571)
117 2ell_A Acidic leucine-rich nuc 99.4 2.2E-13 7.5E-18 118.5 9.1 107 82-190 46-159 (168)
118 3e6j_A Variable lymphocyte rec 99.4 1.6E-12 5.3E-17 119.2 14.9 147 62-223 22-172 (229)
119 2je0_A Acidic leucine-rich nuc 99.4 4.3E-13 1.5E-17 114.1 9.0 106 85-191 17-126 (149)
120 4b8c_D Glucose-repressible alc 99.4 4.1E-13 1.4E-17 144.0 10.6 155 35-191 171-329 (727)
121 1dce_A Protein (RAB geranylger 99.4 1.8E-15 6.3E-20 157.2 -7.9 109 109-227 442-550 (567)
122 2je0_A Acidic leucine-rich nuc 99.4 4.3E-13 1.5E-17 114.1 7.9 120 37-160 17-147 (149)
123 1a9n_A U2A', U2A'; complex (nu 99.4 6.9E-13 2.4E-17 116.3 9.4 132 54-190 14-152 (176)
124 1a9n_A U2A', U2A'; complex (nu 99.4 1.5E-12 5E-17 114.2 9.3 125 36-164 18-151 (176)
125 2wfh_A SLIT homolog 2 protein 99.3 9.2E-12 3.1E-16 110.7 13.3 121 40-164 13-137 (193)
126 1w8a_A SLIT protein; signaling 99.3 4.9E-12 1.7E-16 112.5 10.9 123 40-165 11-138 (192)
127 1w8a_A SLIT protein; signaling 99.3 8.9E-12 3E-16 110.8 12.6 124 62-191 11-139 (192)
128 4b8c_D Glucose-repressible alc 99.3 1.2E-12 4E-17 140.4 6.5 131 57-191 222-354 (727)
129 2wfh_A SLIT homolog 2 protein 99.3 2E-11 7E-16 108.4 13.4 124 62-191 13-139 (193)
130 2o6r_A Variable lymphocyte rec 99.3 3.4E-11 1.2E-15 105.5 12.8 124 39-165 9-136 (177)
131 1ds9_A Outer arm dynein; leuci 99.2 4.9E-13 1.7E-17 119.7 -1.2 108 81-191 44-153 (198)
132 1dce_A Protein (RAB geranylger 99.2 4.3E-11 1.5E-15 124.3 12.9 123 86-217 442-567 (567)
133 2o6r_A Variable lymphocyte rec 99.2 1.2E-10 4.1E-15 102.0 13.7 124 62-191 10-137 (177)
134 1ds9_A Outer arm dynein; leuci 99.1 1.4E-12 4.9E-17 116.6 -3.6 142 39-184 25-180 (198)
135 2r9u_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 98.7 11.4 100 88-190 15-117 (174)
136 3g39_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 98.0 11.5 101 87-190 11-114 (170)
137 3sb4_A Hypothetical leucine ri 99.1 2.2E-10 7.6E-15 111.1 9.1 179 36-228 48-315 (329)
138 2r9u_A Variable lymphocyte rec 99.0 1.8E-09 6.2E-14 93.9 11.3 98 62-164 15-116 (174)
139 3sb4_A Hypothetical leucine ri 99.0 1.9E-09 6.4E-14 104.5 11.5 92 309-414 224-316 (329)
140 3g39_A Variable lymphocyte rec 99.0 2.9E-09 1E-13 92.3 11.1 98 62-164 12-113 (170)
141 3un9_A NLR family member X1; l 98.9 4.2E-10 1.4E-14 110.6 3.6 159 59-223 72-252 (372)
142 3un9_A NLR family member X1; l 98.8 6.3E-10 2.1E-14 109.4 1.6 156 34-191 69-252 (372)
143 4fdw_A Leucine rich hypothetic 98.8 3.7E-07 1.3E-11 90.5 21.5 264 58-403 112-379 (401)
144 3e4g_A ATP synthase subunit S, 98.8 2E-09 7E-14 92.0 4.4 66 341-410 62-130 (176)
145 3e4g_A ATP synthase subunit S, 98.8 3.3E-09 1.1E-13 90.8 4.2 92 394-516 61-155 (176)
146 2ifg_A High affinity nerve gro 98.7 3.8E-08 1.3E-12 96.1 10.4 97 64-164 13-114 (347)
147 4fs7_A Uncharacterized protein 98.7 6.4E-07 2.2E-11 88.9 18.2 309 50-402 60-374 (394)
148 4fdw_A Leucine rich hypothetic 98.7 4.1E-07 1.4E-11 90.2 15.6 212 37-266 157-379 (401)
149 2ra8_A Uncharacterized protein 98.6 6.8E-08 2.3E-12 94.0 8.5 182 36-223 106-320 (362)
150 4fs7_A Uncharacterized protein 98.6 1.3E-06 4.6E-11 86.6 17.5 133 73-220 59-195 (394)
151 2ifg_A High affinity nerve gro 98.6 1E-07 3.5E-12 93.0 8.3 99 90-191 13-116 (347)
152 4gt6_A Cell surface protein; l 98.3 9.1E-05 3.1E-09 73.3 22.7 297 57-403 61-366 (394)
153 4gt6_A Cell surface protein; l 98.2 0.0003 1E-08 69.5 22.9 111 74-188 52-170 (394)
154 1io0_A Tropomodulin; LRR prote 98.1 3.2E-06 1.1E-10 74.0 5.2 111 79-190 30-163 (185)
155 2ra8_A Uncharacterized protein 98.0 5E-06 1.7E-10 80.8 6.6 170 35-221 137-341 (362)
156 1io0_A Tropomodulin; LRR prote 97.9 6.5E-06 2.2E-10 72.0 4.5 116 102-223 30-164 (185)
157 3rw6_A Nuclear RNA export fact 97.7 3.4E-05 1.1E-09 71.1 6.1 79 105-184 167-257 (267)
158 3rw6_A Nuclear RNA export fact 97.6 7.6E-05 2.6E-09 68.7 6.7 87 127-217 167-258 (267)
159 4h09_A Hypothetical leucine ri 97.4 0.016 5.6E-07 56.5 21.1 83 307-402 236-318 (379)
160 4h09_A Hypothetical leucine ri 96.3 0.021 7.3E-07 55.7 11.1 103 81-187 213-319 (379)
161 1pgv_A TMD-1, tropomodulin TMD 95.1 0.026 8.9E-07 48.9 5.4 86 78-163 34-136 (197)
162 3rfe_A Platelet glycoprotein I 94.3 0.074 2.5E-06 42.8 6.0 35 154-189 32-66 (130)
163 3rfe_A Platelet glycoprotein I 94.1 0.099 3.4E-06 42.0 6.3 52 89-142 12-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 93.7 0.054 1.8E-06 46.9 4.2 114 105-221 38-168 (197)
165 2a5y_B CED-4; apoptosis; HET: 62.0 1.4 4.9E-05 45.0 -0.4 17 1-17 456-472 (549)
166 2lz0_A Uncharacterized protein 27.4 44 0.0015 24.8 3.0 35 57-94 18-52 (100)
167 2lz0_A Uncharacterized protein 23.6 69 0.0024 23.7 3.5 42 75-117 10-52 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.2e-32 Score=287.65 Aligned_cols=165 Identities=26% Similarity=0.264 Sum_probs=135.4
Q ss_pred CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (540)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 100 (540)
.+.+++.+|. .++++++++++++|.+..++. +.++++|++|++++|.+ ..++...|.++++|++|++++|.+..+
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 19 MDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp TTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred cCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCccccc
Confidence 3445666665 467899999999999977765 44999999999999986 556555678999999999999999876
Q ss_pred -CcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCc--ccchhcCCCCCCCEEECCCCccccccchhhhh
Q 009194 101 -PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (540)
Q Consensus 101 -~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 175 (540)
|..++++++|++|++++|.++. + ..++++++|++|++++|.+. .+|..++++++|++|++++|. +..++...++
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 174 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQ 174 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTH
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhh
Confidence 7889999999999999999887 4 78999999999999999887 578999999999999999988 5555444355
Q ss_pred cCCccc----eEEccCCCcc
Q 009194 176 KLSQLE----ELYMGNGFSG 191 (540)
Q Consensus 176 ~l~~L~----~L~l~~~~~~ 191 (540)
.+++|+ .|++++|.+.
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCC
T ss_pred hhhccccccceeeccCCCcc
Confidence 555444 5777666554
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.5e-31 Score=279.23 Aligned_cols=433 Identities=14% Similarity=0.104 Sum_probs=265.1
Q ss_pred CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (540)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 100 (540)
.+.+++.+|. .+++.++++++++|.+..++. +.++++|++|++++|.+ ..+....|.++++|++|++++|.+..+
T Consensus 20 ~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 20 ENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCccccc
Confidence 3445556664 568899999999999977743 44999999999999987 445555578999999999999999864
Q ss_pred -CcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhc
Q 009194 101 -PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISK 176 (540)
Q Consensus 101 -~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 176 (540)
|..++++++|++|++++|.++. +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...++.
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 175 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSS 175 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHT
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhh
Confidence 7789999999999999999987 588999999999999999998753 334559999999999998 66666666899
Q ss_pred CCccc--eEEccCCCcccccccCCCcc-----------------------------------------chhhccCCC--C
Q 009194 177 LSQLE--ELYMGNGFSGWEKVEGGSNA-----------------------------------------SLVELERLT--E 211 (540)
Q Consensus 177 l~~L~--~L~l~~~~~~~~~~~~~~~~-----------------------------------------~~~~l~~l~--~ 211 (540)
+++|+ .|++++|.+........... ....+..+. +
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 99999 88888887653322111000 000011111 4
Q ss_pred ccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhccccee
Q 009194 212 LTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDL 289 (540)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 289 (540)
|+.|++.+|.+..++..... ++|+.|.++.+.....+. ....+++|++|+++++.- ..+ .......+++|+.|
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~l-~~~--~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKF-ENL--CQISASNFPSLTHL 330 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS--SCCSCTTCCEEECTTCCC-SBG--GGGCGGGCTTCSEE
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh--hhcccccCCEEECccCCc-CcC--chhhhhccCcCCEE
Confidence 66666666666655554322 667777665544332211 134566777777766321 111 11122235666666
Q ss_pred eeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCC
Q 009194 290 WLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSN 369 (540)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 369 (540)
.+.++......... .+..+++|++|+++++. ++.+.. .......+++|+.|+++++. +..+.... ++.+++
T Consensus 331 ~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~ 401 (606)
T 3t6q_A 331 SIKGNTKRLELGTG--CLENLENLRELDLSHDD-IETSDC--CNLQLRNLSHLQSLNLSYNE-PLSLKTEA---FKECPQ 401 (606)
T ss_dssp ECCSCSSCCBCCSS--TTTTCTTCCEEECCSSC-CCEEEE--STTTTTTCTTCCEEECCSCS-CEEECTTT---TTTCTT
T ss_pred ECCCCCcccccchh--hhhccCcCCEEECCCCc-cccccC--cchhcccCCCCCEEECCCCc-CCcCCHHH---hcCCcc
Confidence 66655432221111 14456677777776663 333210 01134556667777776642 33333222 455666
Q ss_pred CCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCC-----CCCCccCCCCc
Q 009194 370 LRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP-----VHQGIYCCQNL 444 (540)
Q Consensus 370 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~-----~~~~~~~~~~L 444 (540)
|++|++++| .++...+...+..+++|+.|++++|. ++.......+.++.|..+ .+.++.-. ....+..+++|
T Consensus 402 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 402 LELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHL-NLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEE-ECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CCeEECCCC-cCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEE-ECCCCCCCccccccchhhccCCCc
Confidence 777777665 34433232334556667777776643 333333344444555554 34333211 11234456677
Q ss_pred cEEEEccCCCcccccchhhhhhcCCCcEEEEecc
Q 009194 445 TKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 478 (540)
Q Consensus 445 ~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C 478 (540)
+.|++++| +++.+++ ..+.++++|++|+++++
T Consensus 479 ~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 479 EILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS
T ss_pred cEEECCCC-ccCccCh-hhhccccCCCEEECCCC
Confidence 77777766 3444422 23456667777777665
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=1.4e-30 Score=276.72 Aligned_cols=444 Identities=15% Similarity=0.119 Sum_probs=289.5
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~ 117 (540)
-++++.+++.+..+|... .+++++|++++|.+ ..++...|.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 457899999998888743 37999999999997 566665679999999999999999876 56789999999999999
Q ss_pred CccCC--cccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCcccc
Q 009194 118 CELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE 193 (540)
Q Consensus 118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (540)
|.++. |..++++++|++|++++|.+..++ ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 99887 689999999999999999998777 569999999999999998433 46766 89999999999999977632
Q ss_pred cccCCCccchhhccCCCC-ccEEEeecCCCCCCCccccc-cCccEEEEE-------------------------------
Q 009194 194 KVEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS-VELQRYKIR------------------------------- 240 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~------------------------------- 240 (540)
.. ..+..+.+++. +++|++++|.+..++..... .+|+.|.++
T Consensus 169 ~~-----~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 169 TV-----NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CT-----TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred Ch-----hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 21 11122222222 33455554444433333222 233333333
Q ss_pred --------------------------------------------------ecCCCCCCCCccccccccccEEEEeccccc
Q 009194 241 --------------------------------------------------IGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270 (540)
Q Consensus 241 --------------------------------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (540)
........ ....+++|++|++.++.-
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-
Confidence 22221111 123344555555555332
Q ss_pred cccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccccc
Q 009194 271 SILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL 350 (540)
Q Consensus 271 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 350 (540)
..++ .. .+++|+.|.+.++...... . ...+++|++|+++++ .++.+.. .......+++|+.|+++++
T Consensus 320 ~~lp---~~--~l~~L~~L~l~~n~~~~~~----~-~~~l~~L~~L~ls~n-~l~~~~~--~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 320 KQFP---TL--DLPFLKSLTLTMNKGSISF----K-KVALPSLSYLDLSRN-ALSFSGC--CSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp SSCC---CC--CCSSCCEEEEESCSSCEEC----C-CCCCTTCCEEECCSS-CEEEEEE--CCHHHHCCSCCCEEECCSC
T ss_pred cccc---cC--CCCccceeeccCCcCccch----h-hccCCCCCEEECcCC-ccCCCcc--hhhhhccCCcccEeECCCC
Confidence 2222 11 3455555555554333221 1 446667777777666 3333310 0114456777888888775
Q ss_pred ccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeeccc
Q 009194 351 TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAE 430 (540)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~ 430 (540)
. ++.++.. ...+++|++|++++| .+...++...+..+++|+.|++++|. +........+.+++|..+ .+.++
T Consensus 387 ~-l~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L-~l~~n 458 (606)
T 3vq2_A 387 G-AIIMSAN----FMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTL-KMAGN 458 (606)
T ss_dssp S-EEEECCC----CTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEE-ECTTC
T ss_pred c-cccchhh----ccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccchhhhcCCCCCCEE-ECCCC
Confidence 4 5555422 667888888888886 45555443446678888888888865 444444455566666666 45444
Q ss_pred CCC---CCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeec
Q 009194 431 DDP---VHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSL 507 (540)
Q Consensus 431 ~~~---~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l 507 (540)
.-. .+..+..+++|+.|++++| +++.+++ ..+.++++|++|++++|. ++.... +. +..+++|++|++
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-~~------~~~l~~L~~L~l 528 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDS-SH------YNQLYSLSTLDC 528 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEG-GG------TTTCTTCCEEEC
T ss_pred cCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCH-HH------ccCCCcCCEEEC
Confidence 311 2344567888999999888 4555533 346778899999998874 444321 22 336788999999
Q ss_pred ccCCCCC-------CCC-CCCceEeecC
Q 009194 508 HWLPKLS-------SFA-SPEDVIHTEM 527 (540)
Q Consensus 508 ~~~p~L~-------~~~-~l~~l~i~~c 527 (540)
++++ ++ .++ +|+.+++.++
T Consensus 529 ~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 529 SFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred CCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 8775 44 334 4788888764
No 4
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=274.08 Aligned_cols=446 Identities=18% Similarity=0.167 Sum_probs=288.6
Q ss_pred CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (540)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 100 (540)
.+.+++++|. .+++.+++|++++|.+..++. +.++++|++|++++|.+ ..++.+.|.++++|++|++++|.+..+
T Consensus 15 ~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp CSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCcc
Confidence 3455666665 567899999999999977764 45899999999999986 566666679999999999999999876
Q ss_pred C-cccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcc--cchhcCCCCCCCEEECCCCccccccchhhhh
Q 009194 101 P-SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (540)
Q Consensus 101 ~-~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 175 (540)
+ ..++++++|++|++++|.++. + ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 170 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 170 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHcc
Confidence 5 688999999999999999887 4 469999999999999998875 78899999999999999998 5566555577
Q ss_pred cCCcc----ceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCC------------------------------
Q 009194 176 KLSQL----EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD------------------------------ 221 (540)
Q Consensus 176 ~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------------------------ 221 (540)
.+++| +.+++++|.+...... .+... +|+.|++.+|.
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~~~~~--------~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNFIQPG--------AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTT--------TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred chhccchhhhhcccCCCCceecCHH--------HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 78777 7888888876532211 11111 23333333221
Q ss_pred -----------------------------CCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEecccccc
Q 009194 222 -----------------------------AEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS 271 (540)
Q Consensus 222 -----------------------------~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (540)
.+..+..+.. ++|+.+.+..+....... ..... +|++|++.++.- .
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~-~L~~L~l~~n~~-~ 317 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNF-GWQHLELVNCKF-G 317 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB--CCSCC-CCSEEEEESCBC-S
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh--hhccC-CccEEeeccCcc-c
Confidence 1112222222 677777775543222110 13334 777777777432 2
Q ss_pred ccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccc
Q 009194 272 ILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT 351 (540)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 351 (540)
.++ . ..+++|+.|.+.+...... .. ...+++|++|+++++ .++.+.. .......+++|+.|+++++.
T Consensus 318 ~l~--~---~~l~~L~~L~l~~n~~~~~----~~-~~~~~~L~~L~l~~n-~l~~~~~--~~~~~~~~~~L~~L~l~~n~ 384 (570)
T 2z63_A 318 QFP--T---LKLKSLKRLTFTSNKGGNA----FS-EVDLPSLEFLDLSRN-GLSFKGC--CSQSDFGTTSLKYLDLSFNG 384 (570)
T ss_dssp SCC--B---CBCSSCCEEEEESCBSCCB----CC-CCBCTTCCEEECCSS-CCBEEEE--EEHHHHTCSCCCEEECCSCS
T ss_pred ccC--c---ccccccCEEeCcCCccccc----cc-cccCCCCCEEeCcCC-ccCcccc--ccccccccCccCEEECCCCc
Confidence 222 1 2456777777776543221 11 256777777777776 3333310 00134566777777777643
Q ss_pred cccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccC
Q 009194 352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAED 431 (540)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~ 431 (540)
+..++.. ...+++|++|++++| .++..++...+..+++|++|++++|. +.......+..++.|..+ .+.++.
T Consensus 385 -l~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L-~l~~n~ 456 (570)
T 2z63_A 385 -VITMSSN----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVL-KMAGNS 456 (570)
T ss_dssp -EEEEEEE----EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEE-ECTTCE
T ss_pred -ccccccc----ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEE-ECcCCc
Confidence 4444332 445677777777775 34444333335667777777777753 333333444445555555 444432
Q ss_pred C---CCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecc
Q 009194 432 D---PVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLH 508 (540)
Q Consensus 432 ~---~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~ 508 (540)
. ..+..+..+++|+.|++++|. ++.+.+ ..+.++++|++|++++| .++.++. +. +..+++|++|+++
T Consensus 457 l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~------~~~l~~L~~L~l~ 526 (570)
T 2z63_A 457 FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMASN-QLKSVPD-GI------FDRLTSLQKIWLH 526 (570)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCSCCCT-TT------TTTCTTCCEEECC
T ss_pred CccccchhhhhcccCCCEEECCCCc-cccCCh-hhhhcccCCCEEeCCCC-cCCCCCH-HH------hhcccCCcEEEec
Confidence 1 133455678889999998884 555532 34567888999999887 4555432 11 3367888888888
Q ss_pred cCCCCCCC
Q 009194 509 WLPKLSSF 516 (540)
Q Consensus 509 ~~p~L~~~ 516 (540)
++|--...
T Consensus 527 ~N~~~~~~ 534 (570)
T 2z63_A 527 TNPWDCSC 534 (570)
T ss_dssp SSCBCCCT
T ss_pred CCcccCCC
Confidence 76644333
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=5e-29 Score=268.27 Aligned_cols=426 Identities=15% Similarity=0.092 Sum_probs=258.7
Q ss_pred chhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc
Q 009194 25 ADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102 (540)
Q Consensus 25 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 102 (540)
..++.+|. .+++++++|++++|.+..++. +.++++|++|++++|.+ ..++.+.|.++++|++|++++|.+..+|.
T Consensus 14 ~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 14 LKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp SCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccCh
Confidence 34455564 457899999999999988775 44899999999999987 55555667999999999999999999886
Q ss_pred -ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhh--c
Q 009194 103 -SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS--K 176 (540)
Q Consensus 103 -~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~ 176 (540)
.++++++|++|++++|.++. + ..++++++|++|++++|.+... |..++++++|++|++++|. +..++...++ .
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccc
Confidence 58999999999999999887 4 7899999999999999988755 4558899999999999988 5566554344 5
Q ss_pred CCccceEEccCCCcccccccCCCccchhhcc------------------------CCCCccEEEeecCCCCCCCcc-ccc
Q 009194 177 LSQLEELYMGNGFSGWEKVEGGSNASLVELE------------------------RLTELTTLEIEVPDAEILPPD-FVS 231 (540)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~------------------------~l~~L~~L~l~~~~~~~~~~~-~~~ 231 (540)
+++|+.|++++|.+...... ....+. ..++|+.|++++|.....+.. +..
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPG-----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp TCEESEEECTTCCCCCBCTT-----GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred cccccEEECCCCcccccChh-----hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 68999999999876532211 000000 125667777777665443322 222
Q ss_pred ---cCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCccc-----cc--
Q 009194 232 ---VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS-----VV-- 301 (540)
Q Consensus 232 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~-- 301 (540)
++|+.|.++.+...... ......+++|+.|+++++.- ..+ .......+++|+.|++.+...... +.
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNI-QHL--FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp GGGSCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSCCB-SEE--CTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred cCcCCCCEEECCCCCcCccC-cccccCcccccEeeCCCCcc-Ccc--ChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 34777777544432111 01134566777777766321 111 111112345555555543211000 00
Q ss_pred ccCccCCCCccccEEeeccccCceeeeccccccccccCcc----------------------------cceecccccccc
Q 009194 302 HELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPL----------------------------LEALSLMFLTNL 353 (540)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~----------------------------L~~L~l~~c~~l 353 (540)
... .+..+++|++|+++++ .++.+... ....+++ |+.|+++++ .+
T Consensus 321 ~~~-~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l 393 (680)
T 1ziw_A 321 DDF-SFQWLKCLEHLNMEDN-DIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KI 393 (680)
T ss_dssp CTT-TTTTCTTCCEEECCSC-CBCCCCTT----TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CC
T ss_pred Chh-hcccCCCCCEEECCCC-ccCCCChh----HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CC
Confidence 000 1334555555555544 22222110 1233344 444444442 23
Q ss_pred cccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCC-
Q 009194 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDD- 432 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~- 432 (540)
+.+.... ...+++|++|+++++.--..++ ...+..+++|++|++++|. +..+....+...+.|..+ .+..+..
T Consensus 394 ~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L-~l~~n~l~ 467 (680)
T 1ziw_A 394 SKIESDA---FSWLGHLEVLDLGLNEIGQELT-GQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRL-MLRRVALK 467 (680)
T ss_dssp CEECTTT---TTTCTTCCEEECCSSCCEEECC-SGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEE-ECTTSCCB
T ss_pred CeEChhh---hhCCCCCCEEeCCCCcCccccC-cccccCcccccEEecCCCC-cceeChhhhhcCcccccc-hhcccccc
Confidence 3332222 5567788888888764322333 2345677788888888754 455554555555666555 4443321
Q ss_pred ---CCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecc
Q 009194 433 ---PVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 478 (540)
Q Consensus 433 ---~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C 478 (540)
..+.....+++|+.|+++++ +++.++. ..+.++++|++|+++++
T Consensus 468 ~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 468 NVDSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHN 514 (680)
T ss_dssp CTTCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred ccccCCcccccCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCC
Confidence 12334456677777777775 3555533 23456666777776665
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.9e-29 Score=267.94 Aligned_cols=435 Identities=15% Similarity=0.097 Sum_probs=256.4
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~ 117 (540)
-++++.++..+..+|... .+.+++|++++|.+ ..++...|.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCC--SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCC-CCcCcEEEccCCcc--CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 457888888888888743 34799999999997 556555579999999999999999864 77899999999999999
Q ss_pred CccCC--cccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194 118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (540)
Q Consensus 118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (540)
|.+.. |..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-- 167 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY-- 167 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE--
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc--
Confidence 99886 58899999999999999999987 5669999999999999998 555422115569999999999998761
Q ss_pred ccCCCccchhhccCCCCcc--EEEeecCCCCCCCccccc-cCccEEEEE-------------------------------
Q 009194 195 VEGGSNASLVELERLTELT--TLEIEVPDAEILPPDFVS-VELQRYKIR------------------------------- 240 (540)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~-~~L~~L~l~------------------------------- 240 (540)
.....++.+++|+ .|++++|....++..... .+|+.+.+.
T Consensus 168 ------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 168 ------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp ------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred ------cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccc
Confidence 2245677888888 888998886665544332 444444332
Q ss_pred ---------------------ecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCccc
Q 009194 241 ---------------------IGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS 299 (540)
Q Consensus 241 ---------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 299 (540)
.+...... ......+++|+.|+++++. ...+ +.++ ..+++|+.|++.++.-...
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~l--p~~l-~~l~~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATH-LSEL--PSGL-VGLSTLKKLVLSANKFENL 316 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSC-CSCC--CSSC-CSCTTCCEEECTTCCCSBG
T ss_pred ccChhHhchhhcCceeEEEeecCccCccC-HHHhccccCCCEEeccCCc-cCCC--Chhh-cccccCCEEECccCCcCcC
Confidence 11111110 0012334455555555421 1111 1111 1234555555544322111
Q ss_pred ccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194 300 VVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR 379 (540)
Q Consensus 300 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 379 (540)
... .+..+++|++|+++++.....++.. ....+++|+.|+++++. ++........ .+.+++|++|++++|
T Consensus 317 ~~~---~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~l~~L~~L~l~~n- 386 (606)
T 3t6q_A 317 CQI---SASNFPSLTHLSIKGNTKRLELGTG----CLENLENLRELDLSHDD-IETSDCCNLQ-LRNLSHLQSLNLSYN- 386 (606)
T ss_dssp GGG---CGGGCTTCSEEECCSCSSCCBCCSS----TTTTCTTCCEEECCSSC-CCEEEESTTT-TTTCTTCCEEECCSC-
T ss_pred chh---hhhccCcCCEEECCCCCcccccchh----hhhccCcCCEEECCCCc-cccccCcchh-cccCCCCCEEECCCC-
Confidence 111 1334555555555555321112110 23455666666665532 3332210111 455666666666665
Q ss_pred CCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCC--CCCCccCCCCccEEEEccCCCccc
Q 009194 380 KLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP--VHQGIYCCQNLTKVTVWSCHRLKY 457 (540)
Q Consensus 380 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~~L~~L~l~~C~~l~~ 457 (540)
.++.+++ ..+..+++|++|+++++......+......++.|..+ .+..+.-. .+..+..+++|+.|++++++--..
T Consensus 387 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 387 EPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp SCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE-ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred cCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE-ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence 3444422 2245566677777766533222222224444555554 44443211 122344567777777777642221
Q ss_pred -ccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccC
Q 009194 458 -LFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWL 510 (540)
Q Consensus 458 -l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 510 (540)
++....+..+++|++|++++|. ++.+.. .. +..+++|++|+++++
T Consensus 465 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~------~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 465 NIQKTNSLQTLGRLEILVLSFCD-LSSIDQ-HA------FTSLKMMNHVDLSHN 510 (606)
T ss_dssp EECSSCGGGGCTTCCEEECTTSC-CCEECT-TT------TTTCTTCCEEECCSS
T ss_pred ccccchhhccCCCccEEECCCCc-cCccCh-hh------hccccCCCEEECCCC
Confidence 1222345666777777777763 333321 11 234667777777655
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=7.2e-29 Score=261.58 Aligned_cols=444 Identities=16% Similarity=0.136 Sum_probs=274.6
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~ 117 (540)
.+.++.++..+..+|... .+++++|++++|.+ ..++...|.++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCC--CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCcc--CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 456777777778888733 35799999999987 5555555789999999999999998764 5789999999999999
Q ss_pred CccCC--cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCcccc
Q 009194 118 CELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE 193 (540)
Q Consensus 118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (540)
|.++. +..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 99887 4789999999999999999998876 58999999999999998333 35666 89999999999999987621
Q ss_pred cccCCCccchhhccCCCCc----cEEEeecCCCCCCCccccc-cCccEEEEEecCCCC----------------------
Q 009194 194 KVEGGSNASLVELERLTEL----TTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPE---------------------- 246 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~---------------------- 246 (540)
....++.+++| +.+++++|....++..... .+|+.+.+.......
T Consensus 165 --------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 165 --------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp --------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred --------cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecccc
Confidence 12344555555 7999999997766655443 567777665431000
Q ss_pred ------------CC-----------------------CCccccccccccEEEEeccccccccccchhhhhhhcccceeee
Q 009194 247 ------------DE-----------------------FDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWL 291 (540)
Q Consensus 247 ------------~~-----------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 291 (540)
.. .......+++|+.|++.++.- ..+ +.+.. .+ +|+.|.+
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l--~~~~~-~~-~L~~L~l 311 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERV--KDFSY-NF-GWQHLEL 311 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSC--CBCCS-CC-CCSEEEE
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhh--hhhhc-cC-CccEEee
Confidence 00 000022234444444444211 111 11111 11 4444444
Q ss_pred ccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCC
Q 009194 292 ETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLR 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~ 371 (540)
.++... .++ ...+++|+.|.+.++...... ....+++|+.|+++++. ++........ ...+++|+
T Consensus 312 ~~n~~~-----~l~-~~~l~~L~~L~l~~n~~~~~~-------~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~~~~~~L~ 376 (570)
T 2z63_A 312 VNCKFG-----QFP-TLKLKSLKRLTFTSNKGGNAF-------SEVDLPSLEFLDLSRNG-LSFKGCCSQS-DFGTTSLK 376 (570)
T ss_dssp ESCBCS-----SCC-BCBCSSCCEEEEESCBSCCBC-------CCCBCTTCCEEECCSSC-CBEEEEEEHH-HHTCSCCC
T ss_pred ccCccc-----ccC-cccccccCEEeCcCCcccccc-------ccccCCCCCEEeCcCCc-cCcccccccc-ccccCccC
Confidence 443221 122 234556666666555321111 22556667777776543 3322100000 34567777
Q ss_pred eEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCC--CCCCccCCCCccEEEE
Q 009194 372 IINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP--VHQGIYCCQNLTKVTV 449 (540)
Q Consensus 372 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~~L~~L~l 449 (540)
+|++++| .++.+++. +..+++|++|++++|.-....+...+..++.|..+ .+..+... .+.....+++|+.|++
T Consensus 377 ~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 377 YLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp EEECCSC-SEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE-ECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred EEECCCC-cccccccc--ccccCCCCEEEccCCccccccchhhhhcCCCCCEE-eCcCCcccccchhhhhcCCcCcEEEC
Confidence 7777775 35544332 45667777777777543222222334455555555 44444321 2233456778888888
Q ss_pred ccCCCc-ccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCC-------CCCCCCCCc
Q 009194 450 WSCHRL-KYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK-------LSSFASPED 521 (540)
Q Consensus 450 ~~C~~l-~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~-------L~~~~~l~~ 521 (540)
.+|.-. ..++ ..+..+++|++|++++|. ++.+.. +. +..+++|++|+++++.- +..+++|+.
T Consensus 453 ~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~~-~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 453 AGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQLSP-TA------FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEECT-TT------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCccccch--hhhhcccCCCEEECCCCc-cccCCh-hh------hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 877532 1232 345677888888888774 333311 11 33578888888887632 344567788
Q ss_pred eEeecCC
Q 009194 522 VIHTEMQ 528 (540)
Q Consensus 522 l~i~~c~ 528 (540)
+++.+++
T Consensus 523 L~l~~N~ 529 (570)
T 2z63_A 523 IWLHTNP 529 (570)
T ss_dssp EECCSSC
T ss_pred EEecCCc
Confidence 8887753
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5.7e-29 Score=270.49 Aligned_cols=452 Identities=13% Similarity=0.041 Sum_probs=206.4
Q ss_pred cCCCeEEEccCCCCCCCCC-----cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCC
Q 009194 36 QKDPIAISLPHRDIQELPE-----RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L 110 (540)
.+++++|++++|.+..... ..++++|++|++++|.+ ....+ +.++++|++|++++|.+...+..++++++|
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 225 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE-ESCCB---CTTCTTCCEEECCSSCCCSCCCBCTTCCSC
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc-cccCC---cccCCcCCEEECcCCcCCCCCcccccCCCC
Confidence 3455666666555532221 12444555555554443 22111 134444444444444444322224444444
Q ss_pred cEEEcCCCccCC--cccccCCCCCCEEEecCCCC----------------------c-ccchhcCCC-CCCCEEECCCCc
Q 009194 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNI----------------------N-QLPVEIGQL-TRLQLLDLSNCW 164 (540)
Q Consensus 111 ~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~----------------------~-~lp~~~~~l-~~L~~L~l~~~~ 164 (540)
++|++++|.++. |..++++++|++|++++|.+ . .+|..+... ++|++|++++|.
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 444444444442 34444444444444444433 3 444444332 555555555555
Q ss_pred cccccchhhhhcCCccceEEccCCCcccccccCCCccch-hhccCCCCccEEEeecCCCC-CCCccccc-c-CccEEEEE
Q 009194 165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASL-VELERLTELTTLEIEVPDAE-ILPPDFVS-V-ELQRYKIR 240 (540)
Q Consensus 165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~-~L~~L~l~ 240 (540)
..+.+|.. ++++++|++|++++|.+.. ..+ ..+.++++|+.|++++|.+. .+|..+.. . +|+.|.++
T Consensus 306 l~~~~p~~-~~~l~~L~~L~L~~n~l~~--------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 306 FYGAVPPF-FGSCSLLESLALSSNNFSG--------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp EEECCCGG-GGGCTTCCEEECCSSEEEE--------ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CCCccchH-HhcCCCccEEECCCCcccC--------cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 33344433 5555555555555554430 111 22566666777777666643 45554444 3 66666664
Q ss_pred ecCC----CCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccC------------
Q 009194 241 IGDG----PEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHEL------------ 304 (540)
Q Consensus 241 ~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------ 304 (540)
.+.. +.+.. ...+++|+.|+++++.-...+ +.. ...+++|+.|++.++.-.......+
T Consensus 377 ~N~l~~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~--p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 377 SNNFSGPILPNLC---QNPKNTLQELYLQNNGFTGKI--PPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp SSEEEEECCTTTT---CSTTCCCCEEECCSSEEEEEC--CGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCCcCCCcChhhh---hcccCCccEEECCCCcccccc--CHH-HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence 3321 11100 011344555555442210010 111 1123444444444432111111110
Q ss_pred ---------ccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEE
Q 009194 305 ---------DDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINV 375 (540)
Q Consensus 305 ---------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l 375 (540)
..+..+++|+.|+++++.-...++. ....+++|+.|+++++.--..++.. .+.+++|++|++
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-----~l~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L 521 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-----GLSNCTNLNWISLSNNRLTGEIPKW----IGRLENLAILKL 521 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-----GGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEEC
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-----HHhcCCCCCEEEccCCccCCcCChH----HhcCCCCCEEEC
Confidence 0123444555555555421111111 3445566666666654422233222 445666777777
Q ss_pred eeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccce--------eeecc------------------
Q 009194 376 DSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGF--------IEINA------------------ 429 (540)
Q Consensus 376 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l--------~~i~~------------------ 429 (540)
++|.-...+| ..+..+++|+.|++++|+-...++..... ...+..+ ..+.+
T Consensus 522 ~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 522 SNNSFSGNIP--AELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp CSSCCEEECC--GGGGGCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred CCCcccCcCC--HHHcCCCCCCEEECCCCccCCcCChHHhc-ccchhhhhcccccccccccccccccccccccccccccc
Confidence 6653322332 22456677777777765544333321111 0000000 00000
Q ss_pred --------------cC---C----CCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceecccc
Q 009194 430 --------------ED---D----PVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTT 488 (540)
Q Consensus 430 --------------~~---~----~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~ 488 (540)
++ + ..+.....+++|+.|+++++.--..+| ..++++++|+.|+++++.--..++ +
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g~ip--~ 674 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--KEIGSMPYLFILNLGHNDISGSIP--D 674 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC--GGGGGCTTCCEEECCSSCCCSCCC--G
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC--HHHhccccCCEEeCcCCccCCCCC--h
Confidence 00 0 011223456778888888875333443 346778888888888864322322 1
Q ss_pred ccCCCCccccccccceeecccCCC-------CCCCCCCCceEeecCC
Q 009194 489 TLGGRDEFKVFPKLHYLSLHWLPK-------LSSFASPEDVIHTEMQ 528 (540)
Q Consensus 489 ~~~~~~~~~~~~~L~~L~l~~~p~-------L~~~~~l~~l~i~~c~ 528 (540)
. +..++.|++|+++++.- +..+++|+.+++++++
T Consensus 675 ~------l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 675 E------VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp G------GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred H------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 1 34678888888886643 3455667888887774
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=8.6e-29 Score=269.09 Aligned_cols=424 Identities=14% Similarity=0.042 Sum_probs=215.4
Q ss_pred cCCCeEEEccCCCCC-CCCC---cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-Ccc---cccC
Q 009194 36 QKDPIAISLPHRDIQ-ELPE---RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS---LGRL 107 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~-~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~---l~~l 107 (540)
.+++++|++++|.+. .+|. +.++++|++|++++|.. ....+..++.++++|++|++++|.+... |.. +.++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE-ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc-CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 456777777777663 3443 33667777777777655 3333333334666666666666666542 222 4556
Q ss_pred CCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccC
Q 009194 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (540)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (540)
++|++|++++|.+.....+.++++|++|++++|.+...+..++.+++|++|++++|...+.+|.. ++.+++|++|++++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISS 256 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCS
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCC
Confidence 66666666666655432335566666666666655543223666666666666666533334433 56666666666666
Q ss_pred CCcccccccCC--------------CccchhhccC-CCCccEEEeecCCCC-CCCccccc-cCccEEEEEecCCCCCCCC
Q 009194 188 GFSGWEKVEGG--------------SNASLVELER-LTELTTLEIEVPDAE-ILPPDFVS-VELQRYKIRIGDGPEDEFD 250 (540)
Q Consensus 188 ~~~~~~~~~~~--------------~~~~~~~l~~-l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~ 250 (540)
|.+........ ....+..+.. +++|++|++++|.+. .+|..+.. ++|+.|.++.+........
T Consensus 257 n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp SCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred CcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 55431100000 0011112222 245555555555433 33333333 4555555533221100000
Q ss_pred ccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeecc
Q 009194 251 PLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGS 330 (540)
Q Consensus 251 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 330 (540)
.....+++|++|+++++.-.. ..+..+....++|+.|++.++.-.......+. ...+++|++|++++|. ++....
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~p- 411 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSNNFSGPILPNLC-QNPKNTLQELYLQNNG-FTGKIP- 411 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEE--CCCTTHHHHTTTCSEEECCSSEEEEECCTTTT-CSTTCCCCEEECCSSE-EEEECC-
T ss_pred HHHhcCCCCCEEeCcCCccCc--cccHHHHhhhcCCcEEEccCCCcCCCcChhhh-hcccCCccEEECCCCc-cccccC-
Confidence 012344555555555522100 11222222223566666655432222111111 1225677777777773 332211
Q ss_pred ccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccc
Q 009194 331 VRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI 410 (540)
Q Consensus 331 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 410 (540)
.....+++|+.|+++++. ++...... .+.+++|++|++++|.-...+ +. .+..+++|++|++++|. ++..
T Consensus 412 ---~~l~~l~~L~~L~Ls~N~-l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~-p~-~~~~l~~L~~L~L~~N~-l~~~ 481 (768)
T 3rgz_A 412 ---PTLSNCSELVSLHLSFNY-LSGTIPSS---LGSLSKLRDLKLWLNMLEGEI-PQ-ELMYVKTLETLILDFND-LTGE 481 (768)
T ss_dssp ---GGGGGCTTCCEEECCSSE-EESCCCGG---GGGCTTCCEEECCSSCCCSCC-CG-GGGGCTTCCEEECCSSC-CCSC
T ss_pred ---HHHhcCCCCCEEECcCCc-ccCcccHH---HhcCCCCCEEECCCCcccCcC-CH-HHcCCCCceEEEecCCc-ccCc
Confidence 145567778888887753 33222221 556777888888776433233 22 34567778888887754 3333
Q ss_pred cccCCCCCCCccceeeecccCCC--CCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccc
Q 009194 411 IGPDMEKPPTTQGFIEINAEDDP--VHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 479 (540)
Q Consensus 411 ~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~ 479 (540)
.....+.++.|..+ .+.++.-. .+..+..+++|+.|++++|.-...+| ..+.++++|+.|++++|+
T Consensus 482 ~p~~l~~l~~L~~L-~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 482 IPSGLSNCTNLNWI-SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCGGGGGCTTCCEE-ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC--GGGGGCTTCCEEECCSSE
T ss_pred CCHHHhcCCCCCEE-EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCCCEEECCCCc
Confidence 33444555666655 55554322 33445577788888888875444443 345677788888877764
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=9.2e-29 Score=259.50 Aligned_cols=421 Identities=16% Similarity=0.147 Sum_probs=247.0
Q ss_pred hhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc
Q 009194 26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103 (540)
Q Consensus 26 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 103 (540)
.++++|. .+.+.++++++++|.+..++. +.++++|++|++++|.+ ..++.+.|.++++|++|++++|.+..++..
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHH
Confidence 4445554 346789999999998876643 44889999999999986 455555568899999999999999887654
Q ss_pred -cccCCCCcEEEcCCCccCC---cccccCCCCCCEEEecCCC-Ccccc-hhcCCCCCCCEEECCCCccccccchhhhhcC
Q 009194 104 -LGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSN-INQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKL 177 (540)
Q Consensus 104 -l~~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~-~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 177 (540)
++++++|++|++++|.++. +..++++++|++|++++|. +..+| ..+.++++|++|++++|......|.. ++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTC
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcc
Confidence 8899999999999998774 4778899999999999986 66776 46888999999999988844445554 8889
Q ss_pred CccceEEccCCCcccccccCCCccchh-hccCCCCccEEEeecCCCCCCC---cccc--ccCccEEEEEecCCCCCCC--
Q 009194 178 SQLEELYMGNGFSGWEKVEGGSNASLV-ELERLTELTTLEIEVPDAEILP---PDFV--SVELQRYKIRIGDGPEDEF-- 249 (540)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~---~~~~--~~~L~~L~l~~~~~~~~~~-- 249 (540)
++|++|+++++.... ... .++.+++|+.|++++|.+..++ ..+. .++|+.|.+..........
T Consensus 172 ~~L~~L~l~~n~~~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 172 RDIHHLTLHLSESAF---------LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp SEEEEEEEECSBSTT---------HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred ccCceEecccCcccc---------cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 999999998876541 122 2356889999999998866542 2222 2778888886543211000
Q ss_pred -CccccccccccEEEEeccccccccccc----hhhhhhhcccceeeeccccCccccc-ccCc-cCCCCccccEEeecccc
Q 009194 250 -DPLLVKSEASRLMMLKGIKKVSILQEN----DGTKMLLQRTEDLWLETLEGVQSVV-HELD-DGEGFPRLKRLLVTDCS 322 (540)
Q Consensus 250 -~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~-~~~~~~~L~~L~l~~~~ 322 (540)
......+++|+.+++.+|.- ..+... ......+++++.|.+.++..-.... ..+. .....++|+.|.++++
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n- 320 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS- 320 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-
T ss_pred HHHHhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-
Confidence 00124567888888887442 111000 0011224566666665543211100 0000 0112345666666665
Q ss_pred CceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccC-hHHHhhcccccEEEE
Q 009194 323 EILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNLLRLQKVKV 401 (540)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l 401 (540)
+++.++.. ....+++|+.|+++++.--..++..... .+.+++|++|++++| .++.++. ...+..+++|++|++
T Consensus 321 ~l~~ip~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 321 KVFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNSAC-KGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp CCCCCCHH----HHHHCTTCCEEECCSSCCCHHHHHHHTC-TTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEEC
T ss_pred ccccCCHH----HHhcCccccEEEccCCccccccccchhh-hhccccCcEEEccCC-cccccccchhhhhcCCCCCEEEC
Confidence 34433211 1134666667766664422222111000 445666677766665 4555432 123455666666666
Q ss_pred ccccccccccccCCCCCCCccceeeecccCCCCCCC-ccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecc
Q 009194 402 EDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQG-IYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 478 (540)
Q Consensus 402 ~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~-~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C 478 (540)
++| +++.++ ...+..+.|..+ .+..+. .... ...+++|+.|++++| +++.++ .++++|++|+++++
T Consensus 395 s~N-~l~~lp-~~~~~~~~L~~L-~Ls~N~--l~~l~~~~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 395 SRN-TFHPMP-DSCQWPEKMRFL-NLSSTG--IRVVKTCIPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRN 461 (549)
T ss_dssp TTC-CCCCCC-SCCCCCTTCCEE-ECTTSC--CSCCCTTSCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS
T ss_pred CCC-CCccCC-hhhcccccccEE-ECCCCC--cccccchhcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCC
Confidence 664 444443 222333444444 333332 1110 111245555555555 233321 34455555555554
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5.1e-28 Score=253.87 Aligned_cols=442 Identities=14% Similarity=0.107 Sum_probs=273.2
Q ss_pred hcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC--CCcccccCCCC
Q 009194 35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLGRLINL 110 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L 110 (540)
..+++++|++++|.+..++. +.++++|++|++++|.+ ...+...+.++++|++|++++|.+.. .|..++++++|
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc--CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 36789999999999977653 44899999999999987 66777777999999999999999985 46788999999
Q ss_pred cEEEcCCCc-cCC-c-ccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEcc
Q 009194 111 QTLCLDWCE-LAD-I-AAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (540)
Q Consensus 111 ~~L~l~~~~-~~~-~-~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (540)
++|++++|. +.. + ..+.++++|++|++++|.++. .|..++.+++|++|+++.+. ...++...++.+++|+.|+++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEE
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEcc
Confidence 999999998 555 4 689999999999999998884 77889999999999999987 667777656789999999999
Q ss_pred CCCcccccccCCCccchhhccCCCCccEEEeecCCCCC-----CCccccc-cCccEEEEEecCCCC---CC--CCccccc
Q 009194 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI-----LPPDFVS-VELQRYKIRIGDGPE---DE--FDPLLVK 255 (540)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~-~~L~~L~l~~~~~~~---~~--~~~~~~~ 255 (540)
+|.+..... ........+++|+.|++.++.... ++..... .+|+.+.+..+.... +. .......
T Consensus 205 ~n~l~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 205 DTNLARFQF-----SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp SCBCTTCCC-----CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred CCccccccc-----cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 998762210 011122345667777777665321 1111111 556666665433111 10 0111334
Q ss_pred cccccEEEEeccccccccc---cchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeecccc
Q 009194 256 SEASRLMMLKGIKKVSILQ---ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR 332 (540)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 332 (540)
.++++.|.+.+..- .... .........++|+.|.+.+.. ++.+...+ +..+++|++|+++++. ++..... .
T Consensus 280 l~~L~~L~l~~~~i-~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~--~~~l~~L~~L~Ls~N~-l~~~~~~-~ 353 (549)
T 2z81_A 280 LGKVETVTIRRLHI-PQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF--SQHLKSLEFLDLSENL-MVEEYLK-N 353 (549)
T ss_dssp CTTCCEEEEESCBC-SCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH--HHHCTTCCEEECCSSC-CCHHHHH-H
T ss_pred hccccccccccccc-chhhhcccchhhhhhcccceEEEeccCc-cccCCHHH--HhcCccccEEEccCCc-ccccccc-c
Confidence 55666666655211 0000 001112233556666665543 22211110 1245666666666653 2211000 0
Q ss_pred ccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccc
Q 009194 333 RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412 (540)
Q Consensus 333 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 412 (540)
....+.+++|+.|+++++ .++.++..+.. .+.+++|++|++++| +++.+|. .+..+++|++|++++|. ++.++.
T Consensus 354 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~~L~~L~Ls~N~-l~~l~~ 427 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQN-HLRSMQKTGEI-LLTLKNLTSLDISRN-TFHPMPD--SCQWPEKMRFLNLSSTG-IRVVKT 427 (549)
T ss_dssp HTCTTSSTTCCEEECTTS-CCCCHHHHHHH-GGGCTTCCEEECTTC-CCCCCCS--CCCCCTTCCEEECTTSC-CSCCCT
T ss_pred hhhhhccccCcEEEccCC-cccccccchhh-hhcCCCCCEEECCCC-CCccCCh--hhcccccccEEECCCCC-cccccc
Confidence 002345566666666653 34433310000 344666666666665 4555543 13445666666666643 443321
Q ss_pred cCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCC
Q 009194 413 PDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGG 492 (540)
Q Consensus 413 ~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~ 492 (540)
.. .++|..+ .++.+. .......+++|+.|+++++ +++.++. ...+++|++|+++++ .++.++. +.
T Consensus 428 ~~---~~~L~~L-~Ls~N~--l~~~~~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~~-~~--- 492 (549)
T 2z81_A 428 CI---PQTLEVL-DVSNNN--LDSFSLFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN-QLKSVPD-GI--- 492 (549)
T ss_dssp TS---CTTCSEE-ECCSSC--CSCCCCCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS-CCCCCCT-TG---
T ss_pred hh---cCCceEE-ECCCCC--hhhhcccCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC-ccCCcCH-HH---
Confidence 11 1233333 333332 3333456889999999998 6777765 246899999999987 4555432 21
Q ss_pred CCccccccccceeecccCCCCC
Q 009194 493 RDEFKVFPKLHYLSLHWLPKLS 514 (540)
Q Consensus 493 ~~~~~~~~~L~~L~l~~~p~L~ 514 (540)
+..+++|++|++.++|-..
T Consensus 493 ---~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 493 ---FDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp ---GGGCTTCCEEECCSSCBCC
T ss_pred ---HhcCcccCEEEecCCCccC
Confidence 3468899999998887533
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.7e-27 Score=256.34 Aligned_cols=177 Identities=21% Similarity=0.207 Sum_probs=145.5
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~ 118 (540)
+.++.+++.+..+|.... +++++|++++|.+ ..++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 568888888888887443 7999999999986 566666679999999999999999875 677899999999999999
Q ss_pred ccCC-c-ccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (540)
Q Consensus 119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (540)
.++. + ..++++++|++|++++|.+..+| ..++++++|++|++++|. +...+...++++++|++|++++|.+....
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 161 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALK- 161 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBC-
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccC-
Confidence 9988 5 47999999999999999998877 468999999999999998 44444444789999999999998775211
Q ss_pred cCCCccchhh--ccCCCCccEEEeecCCCCCCCcc
Q 009194 196 EGGSNASLVE--LERLTELTTLEIEVPDAEILPPD 228 (540)
Q Consensus 196 ~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~ 228 (540)
... ...+++|+.|++++|.+..++..
T Consensus 162 -------~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 162 -------SEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp -------HHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred -------HHHhhccccccccEEECCCCcccccChh
Confidence 122 23568899999999987665543
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=7.4e-29 Score=268.15 Aligned_cols=397 Identities=15% Similarity=0.106 Sum_probs=235.8
Q ss_pred CCCeEEEccCCCC-CCCCCcC-CCCCccEEEc-ccCCC------C-----------------------------------
Q 009194 37 KDPIAISLPHRDI-QELPERL-QCPNLQLFLL-YTEGN------G----------------------------------- 72 (540)
Q Consensus 37 ~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l-~~~~~------~----------------------------------- 72 (540)
.++..|+++++.+ ..+|+.. ++++|++|++ ++|.. .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 6799999999999 4566644 9999999999 55521 0
Q ss_pred ----------------------------------CccccHHHHhcCccCcEEEcCCCCCCC------------------C
Q 009194 73 ----------------------------------PMQVSDHFFEGMEGLKVLQFPGIGSSS------------------L 100 (540)
Q Consensus 73 ----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------l 100 (540)
...+|.. +.++++|++|++++|.+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0004444 5788888899988888877 8
Q ss_pred Ccccc--cCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCC-Ccc--cchhcCCCC-------CCCEEECCCCccc
Q 009194 101 PSSLG--RLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSN-INQ--LPVEIGQLT-------RLQLLDLSNCWWL 166 (540)
Q Consensus 101 ~~~l~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~-~~~--lp~~~~~l~-------~L~~L~l~~~~~~ 166 (540)
|..++ ++++|++|++++|.+.. |..++++++|++|++++|. ++. +|..++.++ +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 88877 88889999998888654 6888888889999988886 763 777666554 88889888888 5
Q ss_pred cccch--hhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cC-ccEEEEEec
Q 009194 167 EVIAP--NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VE-LQRYKIRIG 242 (540)
Q Consensus 167 ~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~ 242 (540)
..+|. . ++++++|+.|++++|.+. ..+ .++.+++|+.|++++|.+..+|..+.. ++ |+.|.++.+
T Consensus 561 ~~ip~~~~-l~~L~~L~~L~Ls~N~l~---------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 561 EEFPASAS-LQKMVKLGLLDCVHNKVR---------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CBCCCHHH-HTTCTTCCEEECTTSCCC---------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred CccCChhh-hhcCCCCCEEECCCCCcc---------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence 57776 4 788888888888888765 222 677888888888888888777777655 66 888888766
Q ss_pred CCCCCCCCccccccccccEEEEeccccccccccch-hhh-hhhcccceeeeccccCcccccccCccCCCCccccEEeecc
Q 009194 243 DGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEND-GTK-MLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD 320 (540)
Q Consensus 243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (540)
.+...+........++|+.|+++++.-...++... ... ...++|+.|++.++.-. .+...+ +..+++|+.|++++
T Consensus 630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~--~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTEL--FATGSPISTIILSN 706 (876)
T ss_dssp CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH--HHTTCCCSEEECCS
T ss_pred CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHH--HccCCCCCEEECCC
Confidence 54433211111222347777777632111111000 000 01235555555544321 111110 22456666666666
Q ss_pred ccCceeeeccccccc---cccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhccccc
Q 009194 321 CSEILHIVGSVRRVR---CEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQ 397 (540)
Q Consensus 321 ~~~l~~~~~~~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 397 (540)
+ +++.++....... ...+++|+.|+++++ .++.++.... ...+++|+.|++++| .++.+|.. +..+++|+
T Consensus 707 N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~--~~~l~~L~~L~Ls~N-~L~~lp~~--l~~L~~L~ 779 (876)
T 4ecn_A 707 N-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR--ATTLPYLSNMDVSYN-CFSSFPTQ--PLNSSQLK 779 (876)
T ss_dssp C-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS--TTTCTTCCEEECCSS-CCSSCCCG--GGGCTTCC
T ss_pred C-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhh--hccCCCcCEEEeCCC-CCCccchh--hhcCCCCC
Confidence 5 3443322110000 112236666666653 4444443210 125566666666664 44444322 34566666
Q ss_pred EEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEec
Q 009194 398 KVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 477 (540)
Q Consensus 398 ~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~ 477 (540)
.|++++++.+..-. + ....+..+..+++|+.|++++|.- +.+|.. + .++|+.|++++
T Consensus 780 ~L~Ls~N~~ls~N~---------l---------~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l---~~~L~~LdLs~ 836 (876)
T 4ecn_A 780 AFGIRHQRDAEGNR---------I---------LRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-L---TPQLYILDIAD 836 (876)
T ss_dssp EEECCCCBCTTCCB---------C---------CCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-C---CSSSCEEECCS
T ss_pred EEECCCCCCccccc---------c---------cccChHHHhcCCCCCEEECCCCCC-CccCHh-h---cCCCCEEECCC
Confidence 66665543221100 0 000223344566677777776643 555432 1 15677777766
Q ss_pred cc
Q 009194 478 CR 479 (540)
Q Consensus 478 C~ 479 (540)
|+
T Consensus 837 N~ 838 (876)
T 4ecn_A 837 NP 838 (876)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4e-29 Score=265.57 Aligned_cols=218 Identities=14% Similarity=0.138 Sum_probs=146.1
Q ss_pred CCCeEEEccCCCC-CCCCCcC-CCCCccEEEcccCCC-------------------------------------------
Q 009194 37 KDPIAISLPHRDI-QELPERL-QCPNLQLFLLYTEGN------------------------------------------- 71 (540)
Q Consensus 37 ~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~~------------------------------------------- 71 (540)
.++++|+++++.+ ..+|... ++++|++|++++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5799999999998 4566544 999999999998842
Q ss_pred ---------------------------------CCccccHHHHhcCccCcEEEcCCCCCCC------------------C
Q 009194 72 ---------------------------------GPMQVSDHFFEGMEGLKVLQFPGIGSSS------------------L 100 (540)
Q Consensus 72 ---------------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------l 100 (540)
....+|.. ++++++|++|++++|.++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 00123333 4677777777777777776 7
Q ss_pred Ccccc--cCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCC-Cc--ccchhcCCC------CCCCEEECCCCcccc
Q 009194 101 PSSLG--RLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSN-IN--QLPVEIGQL------TRLQLLDLSNCWWLE 167 (540)
Q Consensus 101 ~~~l~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~-~~--~lp~~~~~l------~~L~~L~l~~~~~~~ 167 (540)
|..++ ++++|++|++++|.+.. |..++++++|++|++++|. ++ .+|..++.+ ++|++|++++|. +.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence 77777 77777777777777554 6777777777777777776 66 377766665 777777777777 44
Q ss_pred ccch--hhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cC-ccEEEEEecC
Q 009194 168 VIAP--NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VE-LQRYKIRIGD 243 (540)
Q Consensus 168 ~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~~ 243 (540)
.+|. . ++++++|+.|++++|.+. ..++.++.+++|+.|++++|.+..+|..+.. ++ |+.|.++.+.
T Consensus 319 ~ip~~~~-l~~l~~L~~L~L~~N~l~---------g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 319 TFPVETS-LQKMKKLGMLECLYNQLE---------GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp SCCCHHH-HTTCTTCCEEECCSCCCE---------EECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred ccCchhh-hccCCCCCEEeCcCCcCc---------cchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence 6765 4 677777777777777654 1112566677777777777776666666555 55 7777776555
Q ss_pred CCCCCCCccccccccccEEEEec
Q 009194 244 GPEDEFDPLLVKSEASRLMMLKG 266 (540)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~ 266 (540)
+...+.......+++|+.|++++
T Consensus 389 l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 389 LKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp CSSCCSCCCTTCSSCEEEEECCS
T ss_pred CcccchhhhhcccCccCEEECcC
Confidence 43221111111233566666665
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.5e-27 Score=260.16 Aligned_cols=166 Identities=21% Similarity=0.280 Sum_probs=136.0
Q ss_pred cCcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC
Q 009194 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS 99 (540)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 99 (540)
.....++.+|. .++++++|++++|.+..+.. +.++++|++|++++|.. ...++.+.|.++++|++|++++|.+..
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 34455667776 78999999999999976643 44999999999999976 566655667999999999999999986
Q ss_pred C-CcccccCCCCcEEEcCCCccCC--ccc--ccCCCCCCEEEecCCCCcccc--hhcCCCCCCCEEECCCCccccccchh
Q 009194 100 L-PSSLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAPN 172 (540)
Q Consensus 100 l-~~~l~~l~~L~~L~l~~~~~~~--~~~--i~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~ 172 (540)
+ |..++++++|++|++++|.+++ +.. ++++++|++|++++|.+..++ ..++++++|++|++++|......+..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 5 8889999999999999999875 444 999999999999999888653 56899999999999998843334443
Q ss_pred hhhcC--CccceEEccCCCcc
Q 009194 173 VISKL--SQLEELYMGNGFSG 191 (540)
Q Consensus 173 ~l~~l--~~L~~L~l~~~~~~ 191 (540)
++.+ ++|+.|++++|.+.
T Consensus 168 -l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 168 -LEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp -GHHHHHCSSCCCEECCSBSC
T ss_pred -cccccCCccceEECCCCccc
Confidence 6666 78888888887665
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=5.1e-27 Score=240.63 Aligned_cols=342 Identities=18% Similarity=0.195 Sum_probs=238.5
Q ss_pred cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 115 (540)
.++++++++.++.+..++....+++|++|++++|.+ ..++. +.++++|++|++++|.+..++. +.++++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCcc--CCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 567999999999888888877899999999999986 44554 6889999999999999888776 889999999999
Q ss_pred CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (540)
Q Consensus 116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (540)
++|.++....+.++++|++|++++|.+..++. ++.+++|++|++++ . ....+. ++++++|+.|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVS---- 190 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCC----
Confidence 99988884448899999999999998887764 88899999999864 3 344444 788999999999988765
Q ss_pred cCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccccccccc
Q 009194 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (540)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (540)
.+..+..+++|+.|++++|....++.....++|+.|.++.+..... +...
T Consensus 191 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~--------------------- 240 (466)
T 1o6v_A 191 ------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLA--------------------- 240 (466)
T ss_dssp ------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGG---------------------
T ss_pred ------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---hhhh---------------------
Confidence 1245778889999999988866554311114555555543322211 1122
Q ss_pred chhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccc
Q 009194 276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355 (540)
Q Consensus 276 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 355 (540)
.+++|+.|++.++.- ... .++..+++|+.|+++++ .++.+. ....+++|+.|+++++ .++.
T Consensus 241 ------~l~~L~~L~l~~n~l-~~~----~~~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~L~~n-~l~~ 301 (466)
T 1o6v_A 241 ------SLTNLTDLDLANNQI-SNL----APLSGLTKLTELKLGAN-QISNIS------PLAGLTALTNLELNEN-QLED 301 (466)
T ss_dssp ------GCTTCSEEECCSSCC-CCC----GGGTTCTTCSEEECCSS-CCCCCG------GGTTCTTCSEEECCSS-CCSC
T ss_pred ------cCCCCCEEECCCCcc-ccc----hhhhcCCCCCEEECCCC-ccCccc------cccCCCccCeEEcCCC-cccC
Confidence 245555555554432 111 11456777888888777 343332 3556778888888774 3444
Q ss_pred cccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCC
Q 009194 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVH 435 (540)
Q Consensus 356 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~ 435 (540)
++. .+.+++|++|++++| .++..++ ...+++|++|++++| .+++++
T Consensus 302 ~~~-----~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~------------------------ 347 (466)
T 1o6v_A 302 ISP-----ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS------------------------ 347 (466)
T ss_dssp CGG-----GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG------------------------
T ss_pred chh-----hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch------------------------
Confidence 432 456788888888886 4666543 457788888888876 444331
Q ss_pred CCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccc
Q 009194 436 QGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 479 (540)
Q Consensus 436 ~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~ 479 (540)
.+..+++|+.|++.+|+ ++.+++ ...+++|++|++++|+
T Consensus 348 -~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 348 -SLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp -GGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred -hhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc
Confidence 23346788888888874 444432 5777888888888874
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=253.49 Aligned_cols=171 Identities=19% Similarity=0.155 Sum_probs=136.3
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCC-CCC-CcccccCCCCcEEEcCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSL-PSSLGRLINLQTLCLDW 117 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l-~~~l~~l~~L~~L~l~~ 117 (540)
+.++.+++.+..+|. -.+++++|++++|.+ ..+....|.++++|++|++++|.. ..+ |..++++++|++|++++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 577888888999998 668999999999987 444444468999999999999954 455 67899999999999999
Q ss_pred CccCC--cccccCCCCCCEEEecCCCCcc-cchh--cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccc
Q 009194 118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (540)
Q Consensus 118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (540)
|.+.. |..++++++|++|++++|.+.. +|.. ++++++|++|++++|......+...++++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99886 6899999999999999998874 5555 89999999999999984443343348999999999999997752
Q ss_pred ccccCCCccchhhccCC--CCccEEEeecCCC
Q 009194 193 EKVEGGSNASLVELERL--TELTTLEIEVPDA 222 (540)
Q Consensus 193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~ 222 (540)
. ....+..+ ++|+.|+++.|..
T Consensus 163 ~--------~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 163 V--------CEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp C--------CSGGGHHHHHCSSCCCEECCSBS
T ss_pred e--------CHHHcccccCCccceEECCCCcc
Confidence 2 11233333 5677777776663
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.5e-26 Score=234.41 Aligned_cols=343 Identities=18% Similarity=0.223 Sum_probs=252.6
Q ss_pred CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEE
Q 009194 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~ 136 (540)
.++++++|.+.++.. ..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+.....++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i--~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI--KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred HhccccEEecCCCCC--ccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 467899999999886 45554 5789999999999999988877 889999999999999988833399999999999
Q ss_pred ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (540)
Q Consensus 137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (540)
+++|.++.++. +..+++|++|++++|. +..++. ++.+++|+.|++.++.. ....++++++|+.|+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~~-----------~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQVT-----------DLKPLANLTTLERLD 183 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESCC-----------CCGGGTTCTTCCEEE
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCccc-----------CchhhccCCCCCEEE
Confidence 99999988876 8999999999999987 666664 78999999999864321 123478899999999
Q ss_pred eecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccC
Q 009194 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (540)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (540)
+++|.+..++. ...+++|+.|+++++.- ..+. . ...+++|+.|.+.++.-
T Consensus 184 l~~n~l~~~~~-------------------------l~~l~~L~~L~l~~n~l-~~~~---~-~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 184 ISSNKVSDISV-------------------------LAKLTNLESLIATNNQI-SDIT---P-LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CCSSCCCCCGG-------------------------GGGCTTCSEEECCSSCC-CCCG---G-GGGCTTCCEEECCSSCC
T ss_pred CcCCcCCCChh-------------------------hccCCCCCEEEecCCcc-cccc---c-ccccCCCCEEECCCCCc
Confidence 99988765543 22334455555544211 1111 1 22356666666665432
Q ss_pred cccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEe
Q 009194 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD 376 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~ 376 (540)
+.. ..+..+++|+.|+++++. ++.+. ....+++|+.|+++++ .++.++. ...+++|++|+++
T Consensus 234 -~~~----~~l~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 234 -KDI----GTLASLTNLTDLDLANNQ-ISNLA------PLSGLTKLTELKLGAN-QISNISP-----LAGLTALTNLELN 295 (466)
T ss_dssp -CCC----GGGGGCTTCSEEECCSSC-CCCCG------GGTTCTTCSEEECCSS-CCCCCGG-----GTTCTTCSEEECC
T ss_pred -ccc----hhhhcCCCCCEEECCCCc-cccch------hhhcCCCCCEEECCCC-ccCcccc-----ccCCCccCeEEcC
Confidence 221 225678999999999984 44332 4677899999999885 4554443 5568999999999
Q ss_pred eCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcc
Q 009194 377 SCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLK 456 (540)
Q Consensus 377 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~ 456 (540)
+| +++.+++ +..+++|+.|++++| .++++. ....+++|+.|++++| +++
T Consensus 296 ~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~-------------------------~~~~l~~L~~L~l~~n-~l~ 344 (466)
T 1o6v_A 296 EN-QLEDISP---ISNLKNLTYLTLYFN-NISDIS-------------------------PVSSLTKLQRLFFYNN-KVS 344 (466)
T ss_dssp SS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCG-------------------------GGGGCTTCCEEECCSS-CCC
T ss_pred CC-cccCchh---hcCCCCCCEEECcCC-cCCCch-------------------------hhccCccCCEeECCCC-ccC
Confidence 97 5777654 578899999999997 454432 1345799999999998 566
Q ss_pred cccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCC
Q 009194 457 YLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLP 511 (540)
Q Consensus 457 ~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p 511 (540)
.+ ..+.++++|++|++++|. +++... ...+++|+.|.+.+++
T Consensus 345 ~~---~~l~~l~~L~~L~l~~n~-l~~~~~---------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 345 DV---SSLANLTNINWLSAGHNQ-ISDLTP---------LANLTRITQLGLNDQA 386 (466)
T ss_dssp CC---GGGTTCTTCCEEECCSSC-CCBCGG---------GTTCTTCCEEECCCEE
T ss_pred Cc---hhhccCCCCCEEeCCCCc-cCccch---------hhcCCCCCEEeccCCc
Confidence 66 346789999999999985 444321 3468999999998774
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.5e-26 Score=237.31 Aligned_cols=431 Identities=13% Similarity=0.110 Sum_probs=261.7
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~ 118 (540)
++++++++.+..+|.... ++|++|++++|.+ ..++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 678999999988887544 8999999999986 556656678999999999999999876 678899999999999999
Q ss_pred ccCC-cccccCCCCCCEEEecCCCCcc--cchhcCCCCCCCEEECCCCccccccchhhhhcCCcc--ceEEccCCCcccc
Q 009194 119 ELAD-IAAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFSGWE 193 (540)
Q Consensus 119 ~~~~-~~~i~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~~ 193 (540)
.++. |.. .+++|++|++++|.++. +|..++++++|++|++++|. +... .++.+++| +.|++++|.+..
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTTTT-
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccccc-
Confidence 9887 544 89999999999998875 56789999999999999887 3332 26777777 999999887620
Q ss_pred cccCCCccchhhccCCCC-ccEEEeecCCCC-CCCccccc--cCccEEEEEecCC-CCC----CCCccccccccccEEEE
Q 009194 194 KVEGGSNASLVELERLTE-LTTLEIEVPDAE-ILPPDFVS--VELQRYKIRIGDG-PED----EFDPLLVKSEASRLMML 264 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~-~~~~~~~~--~~L~~L~l~~~~~-~~~----~~~~~~~~~~~L~~L~l 264 (540)
....+..+..+.. .-.+++.+|... .++..... ++|+.+.++.+.. ..+ ...+....+++|+.|++
T Consensus 153 -----~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l 227 (520)
T 2z7x_B 153 -----EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227 (520)
T ss_dssp -----SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE
T ss_pred -----cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc
Confidence 0011223333321 112333444322 22221111 4555555544320 000 00011334455566655
Q ss_pred eccccccccccchhhh--hhhcccceeeeccccCcccccccCc--cCCCCcc--------------------------cc
Q 009194 265 KGIKKVSILQENDGTK--MLLQRTEDLWLETLEGVQSVVHELD--DGEGFPR--------------------------LK 314 (540)
Q Consensus 265 ~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~--------------------------L~ 314 (540)
.++.- .... ..+.. ...++|+.|.+.++.-.......+. ....+++ |+
T Consensus 228 ~~~~l-~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 228 NNIET-TWNS-FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEE-EHHH-HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCS
T ss_pred ccccc-CHHH-HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCcee
Confidence 54211 0000 00000 0123555555554432111111110 0023334 55
Q ss_pred EEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccC-hHHHhhc
Q 009194 315 RLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNL 393 (540)
Q Consensus 315 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l 393 (540)
.|.++++. +..+. ....+++|+.|+++++. ++...... .+.+++|++|++++| +++.++. ...+..+
T Consensus 306 ~L~l~~n~-l~~~~------~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l 373 (520)
T 2z7x_B 306 NFTVSGTR-MVHML------CPSKISPFLHLDFSNNL-LTDTVFEN---CGHLTELETLILQMN-QLKELSKIAEMTTQM 373 (520)
T ss_dssp EEEEESSC-CCCCC------CCSSCCCCCEEECCSSC-CCTTTTTT---CCCCSSCCEEECCSS-CCCBHHHHHHHHTTC
T ss_pred EEEcCCCc-ccccc------chhhCCcccEEEeECCc-cChhhhhh---hccCCCCCEEEccCC-ccCccccchHHHhhC
Confidence 55555542 21110 12678899999998854 44422222 677899999999987 5665422 2346788
Q ss_pred ccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCC-CCccEEEEccCCCcccccchhhhhhcCCCcE
Q 009194 394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCC-QNLTKVTVWSCHRLKYLFSYSMVNSLGQLQH 472 (540)
Q Consensus 394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~-~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~ 472 (540)
++|++|+++++.-...++......++.|..+ .+..+.-.. .....+ ++|+.|++++| +++.++.. +..+++|++
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L-~Ls~N~l~~-~~~~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~ 448 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSL-NMSSNILTD-TIFRCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQE 448 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEE-ECCSSCCCG-GGGGSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCE
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEE-ECcCCCCCc-chhhhhcccCCEEECCCC-cccccchh--hhcCCCCCE
Confidence 9999999998654333655445555666666 555543211 111223 68999999987 57776542 348899999
Q ss_pred EEEecccccceeccccccCCCCccccccccceeecccCCC
Q 009194 473 LEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK 512 (540)
Q Consensus 473 L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~ 512 (540)
|++++| .++.++. . .+..+++|++|++.+.|-
T Consensus 449 L~L~~N-~l~~l~~-~------~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 449 LNVASN-QLKSVPD-G------IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EECCSS-CCCCCCT-T------TTTTCTTCCEEECCSSCB
T ss_pred EECCCC-cCCccCH-H------HhccCCcccEEECcCCCC
Confidence 999887 4555432 1 133578888888887764
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.1e-26 Score=246.89 Aligned_cols=354 Identities=14% Similarity=0.140 Sum_probs=232.4
Q ss_pred CCCcC-CCCCccEEEcccCCCCCcc-----------------ccHHHHh--cCccCcEEEcCCCCCC-CCCcccccCCCC
Q 009194 52 LPERL-QCPNLQLFLLYTEGNGPMQ-----------------VSDHFFE--GMEGLKVLQFPGIGSS-SLPSSLGRLINL 110 (540)
Q Consensus 52 l~~~~-~~~~L~~L~l~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~-~l~~~l~~l~~L 110 (540)
+|... ++++|++|++++|.+ ... +|..+ . ++++|++|++++|.+. .+|..++++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCcc-ccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 55534 899999999999997 443 66654 5 8999999999999865 689999999999
Q ss_pred cEEEcCCCc-cCC---cccccCC------CCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchhhhhcCC
Q 009194 111 QTLCLDWCE-LAD---IAAIGQL------KKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178 (540)
Q Consensus 111 ~~L~l~~~~-~~~---~~~i~~l------~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 178 (540)
++|++++|. ++. |..++++ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| . ++.++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCC
Confidence 999999998 873 6777776 999999999999999999 89999999999999999555888 4 89999
Q ss_pred ccceEEccCCCcccccccCCCccchhhccCCCC-ccEEEeecCCCCCCCccccc---cCccEEEEEecCCCCCCCCcccc
Q 009194 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS---VELQRYKIRIGDGPEDEFDPLLV 254 (540)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~ 254 (540)
+|+.|++++|.+. ..+..+..+++ |+.|++++|.+..+|..+.. ++|+.|.++.+.+....... ..
T Consensus 354 ~L~~L~L~~N~l~---------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~ 423 (636)
T 4eco_A 354 KLASLNLAYNQIT---------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FD 423 (636)
T ss_dssp EESEEECCSSEEE---------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SC
T ss_pred CCCEEECCCCccc---------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh-hc
Confidence 9999999999876 34556888888 99999999998888877655 37999999776643321100 11
Q ss_pred -------ccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceee
Q 009194 255 -------KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHI 327 (540)
Q Consensus 255 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 327 (540)
..++|+.|+++++.- ..+ +... +..+++|++|+++++ +++.+
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l-~~l--p~~~---------------------------~~~l~~L~~L~Ls~N-~l~~i 472 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQI-SKF--PKEL---------------------------FSTGSPLSSINLMGN-MLTEI 472 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCC-CSC--CTHH---------------------------HHTTCCCSEEECCSS-CCSBC
T ss_pred ccccccccCCCCCEEECcCCcc-CcC--CHHH---------------------------HccCCCCCEEECCCC-CCCCc
Confidence 345677777766221 111 1121 223455555555555 33333
Q ss_pred ecccccc---ccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccc
Q 009194 328 VGSVRRV---RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC 404 (540)
Q Consensus 328 ~~~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 404 (540)
+...... ....+++|+.|+++++ .++.++.... ...+++|++|+++++ +++.+|.. +..+++|+.|+++++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~--~~~l~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFR--ATTLPYLVGIDLSYN-SFSKFPTQ--PLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGS--TTTCTTCCEEECCSS-CCSSCCCG--GGGCSSCCEEECCSC
T ss_pred CHHHhccccccccccCCccEEECcCC-cCCccChhhh--hccCCCcCEEECCCC-CCCCcChh--hhcCCCCCEEECCCC
Confidence 2110000 0112236666666653 3444443210 125667777777764 45555332 345677777777654
Q ss_pred cccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccc
Q 009194 405 DDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 479 (540)
Q Consensus 405 ~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~ 479 (540)
..+..-. +. ...+..+..+++|+.|+++++.- +.+|.. +. ++|++|++++++
T Consensus 547 ~~ls~N~---------l~---------~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~---~~L~~L~Ls~N~ 598 (636)
T 4eco_A 547 RDAQGNR---------TL---------REWPEGITLCPSLTQLQIGSNDI-RKVNEK-IT---PNISVLDIKDNP 598 (636)
T ss_dssp BCTTCCB---------CC---------CCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC---TTCCEEECCSCT
T ss_pred cccccCc---------cc---------ccChHHHhcCCCCCEEECCCCcC-CccCHh-Hh---CcCCEEECcCCC
Confidence 3221100 00 00223344566777777776643 555432 11 667777777764
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.9e-26 Score=247.89 Aligned_cols=352 Identities=12% Similarity=0.112 Sum_probs=259.9
Q ss_pred CCCCCCCCcC-CCCCccEEEcccCCCCCc-----------------cccHHH-HhcCccCcEEEcCCCCCC-CCCccccc
Q 009194 47 RDIQELPERL-QCPNLQLFLLYTEGNGPM-----------------QVSDHF-FEGMEGLKVLQFPGIGSS-SLPSSLGR 106 (540)
Q Consensus 47 ~~~~~l~~~~-~~~~L~~L~l~~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~-~l~~~l~~ 106 (540)
|.+..+|... ++++|+.|++++|.+ .. .+|..+ |.++++|++|++++|.+. .+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~L-sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPF-TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcC-CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 3444477644 899999999999997 44 266665 348999999999999864 68999999
Q ss_pred CCCCcEEEcCCCc-cCC---cccccCC-------CCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchhh
Q 009194 107 LINLQTLCLDWCE-LAD---IAAIGQL-------KKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNV 173 (540)
Q Consensus 107 l~~L~~L~l~~~~-~~~---~~~i~~l-------~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~ 173 (540)
+++|++|++++|. ++. |..++++ ++|++|++++|.+..+|. .++++++|++|++++|. +..+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~- 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A- 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-
Confidence 9999999999998 763 5555554 499999999999999998 89999999999999998 55888 3
Q ss_pred hhcCCccceEEccCCCcccccccCCCccchhhccCCCC-ccEEEeecCCCCCCCccccc---cCccEEEEEecCCCC---
Q 009194 174 ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS---VELQRYKIRIGDGPE--- 246 (540)
Q Consensus 174 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~--- 246 (540)
++.+++|+.|++++|.+. ..+..+.++++ |+.|++++|.+..+|..+.. ++|+.|.++.+.+..
T Consensus 591 ~~~L~~L~~L~Ls~N~l~---------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE---------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCTTSEESEEECCSSCCS---------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred hcCCCcceEEECcCCccc---------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 899999999999999876 34456788888 99999999998888876555 459999998766532
Q ss_pred -CCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCcc-----CCCCccccEEeecc
Q 009194 247 -DEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD-----GEGFPRLKRLLVTD 320 (540)
Q Consensus 247 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~ 320 (540)
+.........++|+.|+++++.- . ..+.+....+++|+.|.+.+..- ..+...... ..++++|+.|++++
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L-~--~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEI-Q--KFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCC-C--SCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred cchhhhccccCCCcCEEEccCCcC-C--ccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCC
Confidence 21111112445899999998432 2 22444444578999999987643 333222110 22455999999999
Q ss_pred ccCceeeecccccccc--ccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCC-----CCccccChHHHhhc
Q 009194 321 CSEILHIVGSVRRVRC--EVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR-----KLKYLFSFSMAKNL 393 (540)
Q Consensus 321 ~~~l~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~l 393 (540)
+ +++.++. .. ..+++|+.|+++++ .++.++.. ...+++|+.|++++++ ++....+ ..+.++
T Consensus 738 N-~L~~lp~-----~l~~~~l~~L~~L~Ls~N-~L~~lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L 805 (876)
T 4ecn_A 738 N-KLTSLSD-----DFRATTLPYLSNMDVSYN-CFSSFPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTC 805 (876)
T ss_dssp S-CCCCCCG-----GGSTTTCTTCCEEECCSS-CCSSCCCG----GGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGC
T ss_pred C-CCccchH-----HhhhccCCCcCEEEeCCC-CCCccchh----hhcCCCCCEEECCCCCCcccccccccCh-HHHhcC
Confidence 8 6665543 33 37899999999984 56666543 6689999999998733 3332223 235789
Q ss_pred ccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCC
Q 009194 394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHR 454 (540)
Q Consensus 394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~ 454 (540)
++|+.|++++|.- ..++ .. -+++|+.|++++++-
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip------------------------~~--l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVD------------------------EK--LTPQLYILDIADNPN 839 (876)
T ss_dssp SSCCEEECCSSCC-CBCC------------------------SC--CCSSSCEEECCSCTT
T ss_pred CCCCEEECCCCCC-CccC------------------------Hh--hcCCCCEEECCCCCC
Confidence 9999999999754 6553 11 136999999999874
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=3.8e-25 Score=236.17 Aligned_cols=454 Identities=17% Similarity=0.122 Sum_probs=257.0
Q ss_pred CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (540)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 100 (540)
.+.+++++|. .++..+++|++++|.+..++. +.++++|++|++++|.+ ..++.+.|.++++|++|++++|.+..+
T Consensus 39 ~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 3455667665 578899999999999988875 44899999999999986 677777789999999999999999988
Q ss_pred Cc-ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCc--ccchhcCCCCCCCEEECCCCccccccchhhhh
Q 009194 101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (540)
Q Consensus 101 ~~-~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 175 (540)
|. .+.++++|++|++++|.++. + ..++++++|++|++++|.++ .+|..++.+++|++|++++|. +..++...++
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc
Confidence 75 67999999999999999987 4 57999999999999999887 457778999999999999988 5555544455
Q ss_pred cCCccc----eEEccCCCcccccccCCC----------------ccchhhccCCCCccEEEeecCC------CCCC----
Q 009194 176 KLSQLE----ELYMGNGFSGWEKVEGGS----------------NASLVELERLTELTTLEIEVPD------AEIL---- 225 (540)
Q Consensus 176 ~l~~L~----~L~l~~~~~~~~~~~~~~----------------~~~~~~l~~l~~L~~L~l~~~~------~~~~---- 225 (540)
.+.+++ .++++.+.+.....+... ......+..+..++...+.... ....
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 554433 455665554422111100 0011223344444444332211 0000
Q ss_pred ------------------------Cccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhh
Q 009194 226 ------------------------PPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTK 280 (540)
Q Consensus 226 ------------------------~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 280 (540)
...... .+++.+.+........ ........++.|++.++.. ..+. .
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~-~~~~-----~ 345 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKF-GQFP-----T 345 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC---GGGGSCCCCSEEEEESCEE-SSCC-----C
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc---cccccchhhhhhhcccccc-cCcC-----c
Confidence 000000 3344444422211111 1123345666777665321 1111 0
Q ss_pred hhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeecc---------------------ccccccccC
Q 009194 281 MLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGS---------------------VRRVRCEVF 339 (540)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---------------------~~~~~~~~~ 339 (540)
..++.|+.+.+....... . .....+++|+.+.+++.. +...... ........+
T Consensus 346 ~~l~~L~~l~l~~n~~~~-~----~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l 419 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGN-A----FSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL 419 (635)
T ss_dssp CBCTTCCEEEEESCCSCC-B----CCCCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTC
T ss_pred ccchhhhhcccccccCCC-C----cccccccccccchhhccc-cccccccccchhhhhhhhhhhcccccccccccccccc
Confidence 123444444444332211 0 012234555555554432 1111000 000023344
Q ss_pred cccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCC
Q 009194 340 PLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPP 419 (540)
Q Consensus 340 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 419 (540)
++|+.+.+..+......+... ...+++++.++++.+ .+...++ .....+++|+.|+++++.....+....+..++
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~---~~~l~~l~~l~ls~n-~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCT---TTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccchhhhhccccccccccc---ccccccccccccccc-ccccccc-cccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 555555555443332222221 445566666666654 3444322 23455667777777776655555544555555
Q ss_pred CccceeeecccCCC--CCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccc
Q 009194 420 TTQGFIEINAEDDP--VHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFK 497 (540)
Q Consensus 420 ~l~~l~~i~~~~~~--~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~ 497 (540)
+|..| .++.+.-. .+.....+++|+.|+++++ +++.++. ..+.++++|++|+++++. ++.+.. +. +.
T Consensus 495 ~L~~L-~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-~~------l~ 563 (635)
T 4g8a_A 495 NLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQVLDYSLNH-IMTSKK-QE------LQ 563 (635)
T ss_dssp TCCEE-ECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCC-GGGTTCTTCCEEECTTSC-CCBCCS-SC------TT
T ss_pred ccCEE-ECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCCh-hHHhCCCCCCEEECCCCc-CCCCCH-HH------HH
Confidence 55555 44444322 1233456677777777775 5666643 335667777777777653 333321 11 12
Q ss_pred cc-cccceeecccCC
Q 009194 498 VF-PKLHYLSLHWLP 511 (540)
Q Consensus 498 ~~-~~L~~L~l~~~p 511 (540)
.+ ++|++|++++.|
T Consensus 564 ~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 564 HFPSSLAFLNLTQND 578 (635)
T ss_dssp CCCTTCCEEECTTCC
T ss_pred hhhCcCCEEEeeCCC
Confidence 34 467777776443
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=238.41 Aligned_cols=419 Identities=12% Similarity=0.090 Sum_probs=277.5
Q ss_pred hhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccc
Q 009194 28 EKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG 105 (540)
Q Consensus 28 ~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~ 105 (540)
+.+|. .++++++++++++|.+..++. +.++++|++|++++|.+ ..+..+.|.++++|++|++++|.+..+|..
T Consensus 13 ~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-- 87 (520)
T 2z7x_B 13 IHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH-- 87 (520)
T ss_dssp SSCCC-SCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--
T ss_pred ccccc-cccccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--
Confidence 34453 345899999999999987763 45899999999999987 555555579999999999999999988876
Q ss_pred cCCCCcEEEcCCCccCC---cccccCCCCCCEEEecCCCCcccchhcCCCCCC--CEEECCCCcc--ccccchhhhh---
Q 009194 106 RLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPNVIS--- 175 (540)
Q Consensus 106 ~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~~l~--- 175 (540)
.+++|++|++++|.++. |..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|.. ++
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccc
Confidence 89999999999999875 5899999999999999998875 346777888 9999998874 2333333 33
Q ss_pred -----------------------cCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCC-----CCc
Q 009194 176 -----------------------KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI-----LPP 227 (540)
Q Consensus 176 -----------------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~ 227 (540)
.+++|+.+++++|...... ......+..++.+++|+.|++..+.... ++.
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC--SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT--HHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc--ceeecchhhhccccchhhccccccccCHHHHHHHHH
Confidence 3556666666655310000 0001233467778888888887765331 111
Q ss_pred cccccCccEEEEEecC----CCCCCCCccccccccccEEEEeccccccccccc-hhhhhhh--cccceeeeccccCcccc
Q 009194 228 DFVSVELQRYKIRIGD----GPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN-DGTKMLL--QRTEDLWLETLEGVQSV 300 (540)
Q Consensus 228 ~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~~~~ 300 (540)
....++|+.|.++.+. .+.+........++.|+.+++.+. .+..+ .++...+ .+|+.|.+.++.-.. .
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n----~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~ 317 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD----VFGFPQSYIYEIFSNMNIKNFTVSGTRMVH-M 317 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC----CCCSCTHHHHHHHHTCCCSEEEEESSCCCC-C
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc----ceecchhhhhcccccCceeEEEcCCCcccc-c
Confidence 1112588888886543 333311111156788888888772 22323 3333333 458888888765321 1
Q ss_pred cccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCC
Q 009194 301 VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRK 380 (540)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 380 (540)
.....+++|++|+++++. ++... ......+++|+.|+++++. ++.++..... .+.+++|++|+++++ .
T Consensus 318 ----~~~~~l~~L~~L~Ls~n~-l~~~~----~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~~~l~~L~~L~Ls~N-~ 385 (520)
T 2z7x_B 318 ----LCPSKISPFLHLDFSNNL-LTDTV----FENCGHLTELETLILQMNQ-LKELSKIAEM-TTQMKSLQQLDISQN-S 385 (520)
T ss_dssp ----CCCSSCCCCCEEECCSSC-CCTTT----TTTCCCCSSCCEEECCSSC-CCBHHHHHHH-HTTCTTCCEEECCSS-C
T ss_pred ----cchhhCCcccEEEeECCc-cChhh----hhhhccCCCCCEEEccCCc-cCccccchHH-HhhCCCCCEEECCCC-c
Confidence 112578889999998884 33311 1145678889999988743 4432210000 556888999999886 4
Q ss_pred Ccc-ccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCC-CCCCccCCCCccEEEEccCCCcccc
Q 009194 381 LKY-LFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP-VHQGIYCCQNLTKVTVWSCHRLKYL 458 (540)
Q Consensus 381 l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~-~~~~~~~~~~L~~L~l~~C~~l~~l 458 (540)
++. +|. ..+..+++|++|++++|.-...++ .... +.|..+ .+..+.-. ++..+..+++|+.|+++++ +++.+
T Consensus 386 l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~--~~L~~L-~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 386 VSYDEKK-GDCSWTKSLLSLNMSSNILTDTIF-RCLP--PRIKVL-DLHSNKIKSIPKQVVKLEALQELNVASN-QLKSV 459 (520)
T ss_dssp CBCCGGG-CSCCCCTTCCEEECCSSCCCGGGG-GSCC--TTCCEE-ECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred CCccccc-chhccCccCCEEECcCCCCCcchh-hhhc--ccCCEE-ECCCCcccccchhhhcCCCCCEEECCCC-cCCcc
Confidence 555 532 334567889999998865333332 1111 455555 45444322 3344558999999999998 68887
Q ss_pred cchhhhhhcCCCcEEEEecccc
Q 009194 459 FSYSMVNSLGQLQHLEIRNCRS 480 (540)
Q Consensus 459 ~~~~~~~~l~~L~~L~i~~C~~ 480 (540)
+.. .+..+++|++|++++++-
T Consensus 460 ~~~-~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 460 PDG-IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CTT-TTTTCTTCCEEECCSSCB
T ss_pred CHH-HhccCCcccEEECcCCCC
Confidence 653 567899999999998763
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.4e-25 Score=229.61 Aligned_cols=134 Identities=19% Similarity=0.174 Sum_probs=88.8
Q ss_pred CccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHH
Q 009194 310 FPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSM 389 (540)
Q Consensus 310 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 389 (540)
.++|+.|+++++. ++.+... ....+++|+.|+++++ .++.+.... ++.+++|++|++++| .++.+++ ..
T Consensus 274 ~~~L~~L~l~~n~-l~~~~~~----~~~~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-~~ 342 (455)
T 3v47_A 274 ASGVKTCDLSKSK-IFALLKS----VFSHFTDLEQLTLAQN-EINKIDDNA---FWGLTHLLKLNLSQN-FLGSIDS-RM 342 (455)
T ss_dssp TSCCCEEECCSSC-CCEECTT----TTTTCTTCCEEECTTS-CCCEECTTT---TTTCTTCCEEECCSS-CCCEECG-GG
T ss_pred ccCceEEEecCcc-ccccchh----hcccCCCCCEEECCCC-cccccChhH---hcCcccCCEEECCCC-ccCCcCh-hH
Confidence 4678888888873 4433211 4566788888888874 455544333 566788888888886 5666643 34
Q ss_pred HhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCC
Q 009194 390 AKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQ 469 (540)
Q Consensus 390 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~ 469 (540)
+..+++|++|+++++ +++.++ +..+..+++|+.|++.++ +++.++. ..+..+++
T Consensus 343 ~~~l~~L~~L~Ls~N-~l~~~~-----------------------~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~ 396 (455)
T 3v47_A 343 FENLDKLEVLDLSYN-HIRALG-----------------------DQSFLGLPNLKELALDTN-QLKSVPD-GIFDRLTS 396 (455)
T ss_dssp GTTCTTCCEEECCSS-CCCEEC-----------------------TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTT
T ss_pred hcCcccCCEEECCCC-cccccC-----------------------hhhccccccccEEECCCC-ccccCCH-hHhccCCc
Confidence 567888888888885 444442 223345688888888885 5666643 34567788
Q ss_pred CcEEEEecccc
Q 009194 470 LQHLEIRNCRS 480 (540)
Q Consensus 470 L~~L~i~~C~~ 480 (540)
|++|++++++-
T Consensus 397 L~~L~l~~N~l 407 (455)
T 3v47_A 397 LQKIWLHTNPW 407 (455)
T ss_dssp CCEEECCSSCB
T ss_pred ccEEEccCCCc
Confidence 88888887653
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.4e-25 Score=219.41 Aligned_cols=303 Identities=17% Similarity=0.159 Sum_probs=193.7
Q ss_pred hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~ 114 (540)
..+++++++++++.+..++.+..+++|++|++++|.+ ..++. +.++++|++|++++|.+..++ .+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i--~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI--TDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCcc--ccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 3667888888888877777766788888888888775 44444 577888888888888777765 477888888888
Q ss_pred cCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (540)
Q Consensus 115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (540)
+++|.+.....+..+++|++|++++|.....+..+..+++|++|++++|. +..++. ++.+++|+.|++++|.+.
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE--- 190 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC---
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc---
Confidence 88888777434778888888888887444333447788888888888776 555554 677888888888877654
Q ss_pred ccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccc
Q 009194 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ 274 (540)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (540)
....+..+++|+.|++.+|....++. ...+++|++|+++++.- ..++
T Consensus 191 -------~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~~L~~L~l~~n~l-~~~~ 237 (347)
T 4fmz_A 191 -------DISPLASLTSLHYFTAYVNQITDITP-------------------------VANMTRLNSLKIGNNKI-TDLS 237 (347)
T ss_dssp -------CCGGGGGCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCSSCC-CCCG
T ss_pred -------ccccccCCCccceeecccCCCCCCch-------------------------hhcCCcCCEEEccCCcc-CCCc
Confidence 12226677778888887777654443 22334444444444211 1111
Q ss_pred cchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccccccccc
Q 009194 275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE 354 (540)
Q Consensus 275 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 354 (540)
. ...+++|+.|++.++. ++.. +.+..+++|++|+++++ .++.+. ....+++|+.|++++|. ++
T Consensus 238 ---~-~~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 238 ---P-LANLSQLTWLEIGTNQ-ISDI----NAVKDLTKLKMLNVGSN-QISDIS------VLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp ---G-GTTCTTCCEEECCSSC-CCCC----GGGTTCTTCCEEECCSS-CCCCCG------GGGGCTTCSEEECCSSC-CC
T ss_pred ---c-hhcCCCCCEEECCCCc-cCCC----hhHhcCCCcCEEEccCC-ccCCCh------hhcCCCCCCEEECcCCc-CC
Confidence 0 1233555555555432 1221 12456777888888777 444431 45667778888887753 44
Q ss_pred ccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccc
Q 009194 355 TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 405 (540)
...... .+.+++|++|++++|+ ++.+++ ...+++|++|++++|+
T Consensus 301 ~~~~~~---l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 301 NEDMEV---IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGHHH---HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CcChhH---hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 333222 4457778888888764 666544 4567778888877754
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.1e-24 Score=228.81 Aligned_cols=431 Identities=16% Similarity=0.159 Sum_probs=252.7
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~ 117 (540)
.++++++++.+..+|.... +++++|++++|.+ ..++...|.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4788888888877776432 7888888888886 455555567888888888888888765 56678888888888888
Q ss_pred CccCC-cccccCCCCCCEEEecCCCCcccc--hhcCCCCCCCEEECCCCccccccchhhhhcCCcc--ceEEccCCCccc
Q 009194 118 CELAD-IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFSGW 192 (540)
Q Consensus 118 ~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~ 192 (540)
|.++. |.. .+++|++|++++|.+..+| ..++++++|++|++++|. +.... ++.+++| +.|++++|.+..
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCC
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccccc
Confidence 88877 444 7888888888888877654 578888888888888876 33322 4555555 888888776610
Q ss_pred ccccCCCccchhhccCCC--CccEEEeecCCCCC-CCccccc--cCccEEEEEecCCC--CC-CCCccccccccccEEEE
Q 009194 193 EKVEGGSNASLVELERLT--ELTTLEIEVPDAEI-LPPDFVS--VELQRYKIRIGDGP--ED-EFDPLLVKSEASRLMML 264 (540)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~--~~-~~~~~~~~~~~L~~L~l 264 (540)
. ...+..+..+. .+ .+++..|.... ++..... ++|+.+.++..... .. .........+.++.+++
T Consensus 184 ~------~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 184 K------GGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp C------SSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred c------ccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 0 01122333332 12 34555555332 2222111 56667766543200 00 00011234566777777
Q ss_pred eccccccccccchhhh--hhhcccceeeeccccCcccccccCcc--CCCCc--------------------------ccc
Q 009194 265 KGIKKVSILQENDGTK--MLLQRTEDLWLETLEGVQSVVHELDD--GEGFP--------------------------RLK 314 (540)
Q Consensus 265 ~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~--------------------------~L~ 314 (540)
..+.- ..-. ..+.. ...++|+.|++.++.-.......+.. ...++ +|+
T Consensus 257 ~~~~l-~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 257 QHIET-TWKC-SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEE-CHHH-HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred cCCcC-cHHH-HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 65211 0000 01111 11258888888876532222111100 01222 244
Q ss_pred EEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccC-hHHHhhc
Q 009194 315 RLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNL 393 (540)
Q Consensus 315 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l 393 (540)
.|+++++. +..+. ....+++|+.|+++++ .++...... .+.+++|++|+++++ +++.++. ...+..+
T Consensus 335 ~L~l~~n~-~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l 402 (562)
T 3a79_B 335 MLSISDTP-FIHMV------CPPSPSSFTFLNFTQN-VFTDSVFQG---CSTLKRLQTLILQRN-GLKNFFKVALMTKNM 402 (562)
T ss_dssp EEEEESSC-CCCCC------CCSSCCCCCEEECCSS-CCCTTTTTT---CCSCSSCCEEECCSS-CCCBTTHHHHTTTTC
T ss_pred EEEccCCC-ccccc------CccCCCCceEEECCCC-ccccchhhh---hcccCCCCEEECCCC-CcCCcccchhhhcCC
Confidence 44444442 11110 1256788888888875 344422222 667889999999886 6776542 1235678
Q ss_pred ccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCC-CCccEEEEccCCCcccccchhhhhhcCCCcE
Q 009194 394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCC-QNLTKVTVWSCHRLKYLFSYSMVNSLGQLQH 472 (540)
Q Consensus 394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~-~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~ 472 (540)
++|+.|+++++.-...++......++.|..+ .+..+.-. ......+ ++|+.|+++++ +++.++... .++++|++
T Consensus 403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L-~l~~n~l~-~~~~~~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~ 477 (562)
T 3a79_B 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVL-NLSSNMLT-GSVFRCLPPKVKVLDLHNN-RIMSIPKDV--THLQALQE 477 (562)
T ss_dssp TTCCEEECTTSCCBSCCSSCCCCCCTTCCEE-ECCSSCCC-GGGGSSCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSE
T ss_pred CCCCEEECCCCcCCCccChhhhcCcccCCEE-ECCCCCCC-cchhhhhcCcCCEEECCCC-cCcccChhh--cCCCCCCE
Confidence 8999999998653332554445555666655 44444311 1122233 68888888887 677775432 37888888
Q ss_pred EEEecccccceeccccccCCCCccccccccceeecccCCC
Q 009194 473 LEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK 512 (540)
Q Consensus 473 L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~ 512 (540)
|+++++ .++.++. .. +..+++|+.|++++.|-
T Consensus 478 L~L~~N-~l~~l~~-~~------~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 478 LNVASN-QLKSVPD-GV------FDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSS-CCCCCCT-TS------TTTCTTCCCEECCSCCB
T ss_pred EECCCC-CCCCCCH-HH------HhcCCCCCEEEecCCCc
Confidence 888886 3554432 11 33578888888887653
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.8e-24 Score=227.19 Aligned_cols=419 Identities=15% Similarity=0.113 Sum_probs=259.4
Q ss_pred hhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc
Q 009194 26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103 (540)
Q Consensus 26 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 103 (540)
.++.+|. .++++++++++++|.+..++. +.++++|++|++++|.+ ..++.+.|.++++|++|++++|.+..+|..
T Consensus 42 ~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 118 (562)
T 3a79_B 42 NLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC 118 (562)
T ss_dssp CCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred CCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence 4555564 456899999999999988764 45999999999999987 556555678999999999999999999876
Q ss_pred cccCCCCcEEEcCCCccCC---cccccCCCCCCEEEecCCCCcccchhcCCCCCC--CEEECCCCcc--ccccchhhhhc
Q 009194 104 LGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPNVISK 176 (540)
Q Consensus 104 l~~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~~l~~ 176 (540)
.+++|++|++++|.++. |..++++++|++|++++|.+... .+..+++| ++|++++|.. ....|.. +..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~ 193 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQI 193 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEE
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-ccc
Confidence 89999999999999876 37899999999999999988752 35555666 9999999874 3333433 444
Q ss_pred C--------------------------CccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC-----CC
Q 009194 177 L--------------------------SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-----IL 225 (540)
Q Consensus 177 l--------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~ 225 (540)
+ ++|+.++++++..... .....+..+..+++|+.+++..+... .+
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 269 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ----RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH----HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc----hHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence 3 3444444444321000 00112334455566666655544321 11
Q ss_pred CccccccCccEEEEEecC----CCCCCCCccccccccccEEEEeccccccccccc-hhhhhhh--cccceeeeccccCcc
Q 009194 226 PPDFVSVELQRYKIRIGD----GPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN-DGTKMLL--QRTEDLWLETLEGVQ 298 (540)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~~ 298 (540)
+......+|+.|.++.+. .+.+........++.|+.+++.. ..+..+ .+....+ .+++.|.+.++.-..
T Consensus 270 ~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~----~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN----QVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE----CCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccc----ceeecChhhhhhhhccCcceEEEccCCCccc
Confidence 111112478888886543 22221000013344444444443 222222 2222222 457778777654311
Q ss_pred cccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeC
Q 009194 299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSC 378 (540)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c 378 (540)
......+++|++|+++++. ++... ......+++|+.|+++++ .++.++..... .+.+++|++|+++++
T Consensus 346 -----~~~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 346 -----MVCPPSPSSFTFLNFTQNV-FTDSV----FQGCSTLKRLQTLILQRN-GLKNFFKVALM-TKNMSSLETLDVSLN 413 (562)
T ss_dssp -----CCCCSSCCCCCEEECCSSC-CCTTT----TTTCCSCSSCCEEECCSS-CCCBTTHHHHT-TTTCTTCCEEECTTS
T ss_pred -----ccCccCCCCceEEECCCCc-cccch----hhhhcccCCCCEEECCCC-CcCCcccchhh-hcCCCCCCEEECCCC
Confidence 1112567788888888773 33211 114466778888888773 45544321111 566788888888876
Q ss_pred CCCcc-ccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCC-CCCCCccCCCCccEEEEccCCCcc
Q 009194 379 RKLKY-LFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDD-PVHQGIYCCQNLTKVTVWSCHRLK 456 (540)
Q Consensus 379 ~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~-~~~~~~~~~~~L~~L~l~~C~~l~ 456 (540)
.++. ++. ..+..+++|++|+++++.--..++ .... +.|..+ .++.+.- .++..+..+++|+.|++.++ +++
T Consensus 414 -~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~l~--~~L~~L-~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~ 486 (562)
T 3a79_B 414 -SLNSHAYD-RTCAWAESILVLNLSSNMLTGSVF-RCLP--PKVKVL-DLHNNRIMSIPKDVTHLQALQELNVASN-QLK 486 (562)
T ss_dssp -CCBSCCSS-CCCCCCTTCCEEECCSSCCCGGGG-SSCC--TTCSEE-ECCSSCCCCCCTTTTSSCCCSEEECCSS-CCC
T ss_pred -cCCCccCh-hhhcCcccCCEEECCCCCCCcchh-hhhc--CcCCEE-ECCCCcCcccChhhcCCCCCCEEECCCC-CCC
Confidence 4554 432 334567788888888764322222 1111 345555 4444321 13344557899999999997 577
Q ss_pred cccchhhhhhcCCCcEEEEecccc
Q 009194 457 YLFSYSMVNSLGQLQHLEIRNCRS 480 (540)
Q Consensus 457 ~l~~~~~~~~l~~L~~L~i~~C~~ 480 (540)
.++.. .+..+++|++|++++++-
T Consensus 487 ~l~~~-~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 487 SVPDG-VFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCTT-STTTCTTCCCEECCSCCB
T ss_pred CCCHH-HHhcCCCCCEEEecCCCc
Confidence 77653 467899999999998763
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=4.7e-24 Score=210.07 Aligned_cols=283 Identities=16% Similarity=0.150 Sum_probs=208.7
Q ss_pred hhhhhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCC
Q 009194 31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (540)
Q Consensus 31 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L 110 (540)
+.-...++++++++++|.+..++.+..+++|++|++++|.+ ..++. +.++++|++|++++|.+..++. +..+++|
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 33345789999999999998888877999999999999986 44543 6899999999999999998877 8899999
Q ss_pred cEEEcCCCcc-CCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194 111 QTLCLDWCEL-ADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (540)
Q Consensus 111 ~~L~l~~~~~-~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (540)
++|++++|.. ..+..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.+++++|.
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSC
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccCC
Confidence 9999999974 447779999999999999999988776 8899999999999998 667766 7899999999999987
Q ss_pred cccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEeccc
Q 009194 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK 268 (540)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (540)
+.. ...+..+++|++|++++|....++. +.. ++|+.|.++.+..... +....+
T Consensus 211 l~~----------~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l------------ 264 (347)
T 4fmz_A 211 ITD----------ITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDL------------ 264 (347)
T ss_dssp CCC----------CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTC------------
T ss_pred CCC----------CchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcC------------
Confidence 751 1227889999999999999876665 222 6666666654433222 112333
Q ss_pred cccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccc
Q 009194 269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (540)
Q Consensus 269 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (540)
++|+.|.+.++. ++.+ +.+..+++|+.|++++|. ++.... .....+++|+.|+++
T Consensus 265 ---------------~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~L~~n~-l~~~~~----~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 265 ---------------TKLKMLNVGSNQ-ISDI----SVLNNLSQLNSLFLNNNQ-LGNEDM----EVIGGLTNLTTLFLS 319 (347)
T ss_dssp ---------------TTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCGGGH----HHHHTCTTCSEEECC
T ss_pred ---------------CCcCEEEccCCc-cCCC----hhhcCCCCCCEEECcCCc-CCCcCh----hHhhccccCCEEEcc
Confidence 445555554432 2221 124567778888888773 332211 134567788888888
Q ss_pred ccccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194 349 FLTNLETICYSQLREDQSFSNLRIINVDSCR 379 (540)
Q Consensus 349 ~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 379 (540)
+++ ++.++. ...+++|++|++++|+
T Consensus 320 ~n~-l~~~~~-----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 320 QNH-ITDIRP-----LASLSKMDSADFANQV 344 (347)
T ss_dssp SSS-CCCCGG-----GGGCTTCSEESSSCC-
T ss_pred CCc-cccccC-----hhhhhccceeehhhhc
Confidence 764 444433 4557888888887763
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-24 Score=215.82 Aligned_cols=303 Identities=14% Similarity=0.150 Sum_probs=184.5
Q ss_pred CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCC
Q 009194 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~ 133 (540)
.+++++.+.+.++.+ ..++..+|.++++|++|++++|.+..++ ..+..+++|++|++++|.++. +..++++++|+
T Consensus 43 ~l~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 567888888888875 6777777788888888888888887655 477888888888888888776 36678888888
Q ss_pred EEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCc
Q 009194 134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (540)
Q Consensus 134 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (540)
+|++++|.++.+|.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+.. ..++.+++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~l~~L 188 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIPSL 188 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-----------CCGGGCTTC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-----------ccccccccc
Confidence 888888888888876 4788888888888887 556655557888888888888887651 135567788
Q ss_pred cEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeec
Q 009194 213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE 292 (540)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 292 (540)
+.|++++|....++. ..+|+.|.++.+.+.... ....++|+.|+++++ .+.... ....+++|+.|++.
T Consensus 189 ~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n----~l~~~~-~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 189 FHANVSYNLLSTLAI---PIAVEELDASHNSINVVR----GPVNVELTILKLQHN----NLTDTA-WLLNYPGLVEVDLS 256 (390)
T ss_dssp SEEECCSSCCSEEEC---CSSCSEEECCSSCCCEEE----CCCCSSCCEEECCSS----CCCCCG-GGGGCTTCSEEECC
T ss_pred ceeecccccccccCC---CCcceEEECCCCeeeecc----ccccccccEEECCCC----CCcccH-HHcCCCCccEEECC
Confidence 888888877654321 145666666444332221 122345666666552 222111 11223455555554
Q ss_pred cccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCe
Q 009194 293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI 372 (540)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~ 372 (540)
+..-...... .+..+++|+.|+++++ +++.++. ....+++|+.|+++++ .++.++.. .+.+++|++
T Consensus 257 ~n~l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~ 322 (390)
T 3o6n_A 257 YNELEKIMYH---PFVKMQRLERLYISNN-RLVALNL-----YGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLEN 322 (390)
T ss_dssp SSCCCEEESG---GGTTCSSCCEEECCSS-CCCEEEC-----SSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSE
T ss_pred CCcCCCcChh---HccccccCCEEECCCC-cCcccCc-----ccCCCCCCCEEECCCC-cceecCcc----ccccCcCCE
Confidence 4322111111 1334555555555554 3333321 2234555555555553 34433322 334555555
Q ss_pred EEEeeCCCCccccChHHHhhcccccEEEEccc
Q 009194 373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC 404 (540)
Q Consensus 373 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 404 (540)
|+++++ .++.++ ...+++|+.|+++++
T Consensus 323 L~L~~N-~i~~~~----~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 323 LYLDHN-SIVTLK----LSTHHTLKNLTLSHN 349 (390)
T ss_dssp EECCSS-CCCCCC----CCTTCCCSEEECCSS
T ss_pred EECCCC-ccceeC----chhhccCCEEEcCCC
Confidence 555554 344442 234455555555553
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=3.9e-24 Score=218.83 Aligned_cols=389 Identities=15% Similarity=0.105 Sum_probs=241.9
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCC-CC-CcccccCCCCcEEEcCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SL-PSSLGRLINLQTLCLDW 117 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~l~~l~~L~~L~l~~ 117 (540)
+.++..++.+..+|. -.++|++|++++|.+ ..++...|.++++|++|++++|.+. .+ +..+.++++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 456667777777777 336788888888876 4443444578888888888888775 34 45677888888888888
Q ss_pred CccCC--cccccCCCCCCEEEecCCCCcc-cchh--cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccc
Q 009194 118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (540)
Q Consensus 118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (540)
|.++. |..++++++|++|++++|.++. .|.. +..+++|++|++++|......|...++++++|++|++++|.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 88775 5778888888888888887764 3444 77888888888888873333354446788888888888877652
Q ss_pred ccccCCCccchhhccCC--CCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccc
Q 009194 193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270 (540)
Q Consensus 193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (540)
.. ...+..+ .+|+.|+++++....++..... +.........++|++|+++++.-.
T Consensus 169 ~~--------~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 169 IC--------EEDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------------WEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp CC--------TTTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------------HHHHCCTTTTCEEEEEECTTSCCC
T ss_pred cC--------hhhhhccccccccccccccCcccccchhhcc---------------ccccccccccceeeeEecCCCccc
Confidence 11 1223222 5677888887776555432111 000000223456777777763211
Q ss_pred cccccchhhhh--hhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccc
Q 009194 271 SILQENDGTKM--LLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (540)
Q Consensus 271 ~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (540)
... +..... ..++++.|.+.++........ ...++.+.. ..+.....++|+.|+++
T Consensus 226 ~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 226 ESM--AKRFFDAIAGTKIQSLILSNSYNMGSSFG----HTNFKDPDN----------------FTFKGLEASGVKTCDLS 283 (455)
T ss_dssp HHH--HHHHHHHTTTCCEEEEECTTCTTTSCCTT----CCSSCCCCT----------------TTTGGGTTSCCCEEECC
T ss_pred ccc--hhhhhccccccceeeEeeccccccccccc----hhhhccCcc----------------cccccccccCceEEEec
Confidence 111 111111 125556666555432211100 011111100 00122235789999998
Q ss_pred ccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeec
Q 009194 349 FLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEIN 428 (540)
Q Consensus 349 ~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~ 428 (540)
++. +....... .+.+++|++|++++| .++.+++. .+..+++|++|++++| .++.+.
T Consensus 284 ~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~----------------- 339 (455)
T 3v47_A 284 KSK-IFALLKSV---FSHFTDLEQLTLAQN-EINKIDDN-AFWGLTHLLKLNLSQN-FLGSID----------------- 339 (455)
T ss_dssp SSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEEC-----------------
T ss_pred Ccc-ccccchhh---cccCCCCCEEECCCC-cccccChh-HhcCcccCCEEECCCC-ccCCcC-----------------
Confidence 854 44443333 677899999999987 57766443 3567899999999986 445442
Q ss_pred ccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecc
Q 009194 429 AEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLH 508 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~ 508 (540)
......+++|+.|+++++ +++.+++ ..+.++++|++|+++++ .++.++. +. +..+++|++|+++
T Consensus 340 ------~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~------~~~l~~L~~L~l~ 403 (455)
T 3v47_A 340 ------SRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QLKSVPD-GI------FDRLTSLQKIWLH 403 (455)
T ss_dssp ------GGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCCT-TT------TTTCTTCCEEECC
T ss_pred ------hhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-ccccCCH-hH------hccCCcccEEEcc
Confidence 223446799999999998 4666633 45678999999999996 4555432 11 2468999999999
Q ss_pred cCCCCCCCC
Q 009194 509 WLPKLSSFA 517 (540)
Q Consensus 509 ~~p~L~~~~ 517 (540)
+.|--...+
T Consensus 404 ~N~l~~~~~ 412 (455)
T 3v47_A 404 TNPWDCSCP 412 (455)
T ss_dssp SSCBCCCTT
T ss_pred CCCcccCCC
Confidence 776544443
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=4.6e-23 Score=220.00 Aligned_cols=456 Identities=16% Similarity=0.116 Sum_probs=253.5
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~ 118 (540)
++++-++..+..+|... -+++++|++++|.+ ..++...|.++++|++|++++|.++.++. .|.++++|++|++++|
T Consensus 34 ~~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCSSCCSSS-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcCccCCCC-CcCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 34566666677777632 24799999999997 67777778999999999999999998764 6899999999999999
Q ss_pred ccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCccccc
Q 009194 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWEK 194 (540)
Q Consensus 119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (540)
.++. + ..+.++++|++|++++|.++.+|.. ++++++|++|++++|.... ..|.. ++.+++|++|++++|.+....
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccc
Confidence 9987 4 6789999999999999999988875 8999999999999998332 23444 789999999999999876322
Q ss_pred ccCCCccchhhccCCC-CccEEEeecCCCCCCCccccc--------------------------cCccEEEEEecCCCC-
Q 009194 195 VEGGSNASLVELERLT-ELTTLEIEVPDAEILPPDFVS--------------------------VELQRYKIRIGDGPE- 246 (540)
Q Consensus 195 ~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~--------------------------~~L~~L~l~~~~~~~- 246 (540)
. ..+..+.+++ .+..++++.+....++..... ..++...+.......
T Consensus 190 ~-----~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 190 C-----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp G-----GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred c-----ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence 1 1222333332 233556665554444332211 222222222211110
Q ss_pred ----CCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccc-----------------cccCc
Q 009194 247 ----DEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSV-----------------VHELD 305 (540)
Q Consensus 247 ----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~ 305 (540)
............+....+....................+++.+...+....... ...+.
T Consensus 265 ~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 265 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC
T ss_pred cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcC
Confidence 000011222233333333221100000001111112234444444332211000 00011
Q ss_pred cCCCCccccEEeeccccCceeeeccccccccccCcccceeccccccccccccccc----------------------CCC
Q 009194 306 DGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQ----------------------LRE 363 (540)
Q Consensus 306 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----------------------~~~ 363 (540)
...++.|+.+.+.....-. . .....+++|+.+++++.. +....... ...
T Consensus 345 -~~~l~~L~~l~l~~n~~~~-~------~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 415 (635)
T 4g8a_A 345 -TLKLKSLKRLTFTSNKGGN-A------FSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415 (635)
T ss_dssp -CCBCTTCCEEEEESCCSCC-B------CCCCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred -cccchhhhhcccccccCCC-C------cccccccccccchhhccc-cccccccccchhhhhhhhhhhcccccccccccc
Confidence 2234444444444332110 0 133346667777665422 11110000 000
Q ss_pred CCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCC---CCCCCccC
Q 009194 364 DQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDD---PVHQGIYC 440 (540)
Q Consensus 364 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~---~~~~~~~~ 440 (540)
...+++|+.+.+.++...... +......+++++.++++++ .+...........+.+..+ .+..+.. ..+.....
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L-~Ls~N~~~~~~~~~~~~~ 492 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTE 492 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTT
T ss_pred ccccccccchhhhhccccccc-ccccccccccccccccccc-ccccccccccccchhhhhh-hhhhcccccccCchhhhh
Confidence 334555555555554333222 2223455666666666653 3444433444444455444 3333211 12334556
Q ss_pred CCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCC-------C
Q 009194 441 CQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK-------L 513 (540)
Q Consensus 441 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~-------L 513 (540)
+++|+.|++++| +++.+++ ..+.++++|++|+++++ +++.+.. .. +..+++|++|++++..- +
T Consensus 493 l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~~-~~------~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 493 LRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHN-NFFSLDT-FP------YKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp CTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCBCCC-GG------GTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred ccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCC-cCCCCCh-hH------HhCCCCCCEEECCCCcCCCCCHHHH
Confidence 778888888887 5666643 34667888888888876 3444421 11 33578888888886532 3
Q ss_pred CCC-CCCCceEeec
Q 009194 514 SSF-ASPEDVIHTE 526 (540)
Q Consensus 514 ~~~-~~l~~l~i~~ 526 (540)
..+ ++|+.|++.+
T Consensus 563 ~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQ 576 (635)
T ss_dssp TCCCTTCCEEECTT
T ss_pred HhhhCcCCEEEeeC
Confidence 333 4677787753
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1e-23 Score=214.48 Aligned_cols=309 Identities=14% Similarity=0.136 Sum_probs=177.2
Q ss_pred cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 115 (540)
.+++++++++++.+..+|.+..+++|++|++++|.+ ..++ +..+++|++|++++|.++.++ ++.+++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l--~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI--TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC--SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC--CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 345566666665555555444555566666655554 2232 345555555555555555543 455555555555
Q ss_pred CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (540)
Q Consensus 116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (540)
++|.++..+ ++++++|++|++++|.++.++ ++.+++|++|++++|..++.++ ++.+++|+.|++++|.+..
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--- 184 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--- 184 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---
Confidence 555555421 555555555555555555543 4555555555555554344442 4455555555555554431
Q ss_pred cCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccccccccc
Q 009194 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (540)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (540)
+ .++.+++|+.|++++|.+..++ ...+++|+.|++++
T Consensus 185 -------l-~l~~l~~L~~L~l~~N~l~~~~--------------------------l~~l~~L~~L~Ls~--------- 221 (457)
T 3bz5_A 185 -------L-DVSQNKLLNRLNCDTNNITKLD--------------------------LNQNIQLTFLDCSS--------- 221 (457)
T ss_dssp -------C-CCTTCTTCCEEECCSSCCSCCC--------------------------CTTCTTCSEEECCS---------
T ss_pred -------e-ccccCCCCCEEECcCCcCCeec--------------------------cccCCCCCEEECcC---------
Confidence 1 1444555555555555443221 22334455555444
Q ss_pred chhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccc
Q 009194 276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355 (540)
Q Consensus 276 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 355 (540)
.. ++. ++ +..+++|+.|+++++ .++.+ +...+++|+.|.+.+
T Consensus 222 ------------------N~-l~~----ip-~~~l~~L~~L~l~~N-~l~~~-------~~~~l~~L~~L~l~~------ 263 (457)
T 3bz5_A 222 ------------------NK-LTE----ID-VTPLTQLTYFDCSVN-PLTEL-------DVSTLSKLTTLHCIQ------ 263 (457)
T ss_dssp ------------------SC-CSC----CC-CTTCTTCSEEECCSS-CCSCC-------CCTTCTTCCEEECTT------
T ss_pred ------------------Cc-ccc----cC-ccccCCCCEEEeeCC-cCCCc-------CHHHCCCCCEEeccC------
Confidence 21 111 12 456788899999887 44433 455677777776643
Q ss_pred cccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCC
Q 009194 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVH 435 (540)
Q Consensus 356 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~ 435 (540)
.+|+.|++++|..+..+|. ..+++|+.|++++|+.+..++. ..+.+..+
T Consensus 264 ------------n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L----------- 312 (457)
T 3bz5_A 264 ------------TDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDC----QAAGITEL----------- 312 (457)
T ss_dssp ------------CCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEEC----TTCCCSCC-----------
T ss_pred ------------CCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceecc----CCCcceEe-----------
Confidence 3567777777776666642 4678999999999988887762 11333333
Q ss_pred CCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecc
Q 009194 436 QGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 478 (540)
Q Consensus 436 ~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C 478 (540)
.+..+++|+.|++.++ +++.++ +.++++|+.|++++.
T Consensus 313 -~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 313 -DLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVNA 349 (457)
T ss_dssp -CCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCSS
T ss_pred -chhhcccCCEEECCCC-cccccc----cccCCcCcEEECCCC
Confidence 2345688999998886 466652 567889999998874
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.4e-23 Score=211.03 Aligned_cols=312 Identities=18% Similarity=0.130 Sum_probs=164.3
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~ 118 (540)
+.++.+++.+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 34555555555555432 24566666666664 334333456666666666666666543 455666666666666666
Q ss_pred ccCC-c-ccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194 119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (540)
Q Consensus 119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (540)
.++. + ..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++...++.+++|+.|++++|.+..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 166 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS--- 166 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc---
Confidence 6655 3 3456666666666666666543 3346666666666666665 344433335666666666666665541
Q ss_pred cCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCccccccccccEEEEecccccccc
Q 009194 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL 273 (540)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (540)
.....+.++++|+.|++.+|.+..++..... ++|+.|.++.+........ ......+|+.|++++
T Consensus 167 -----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~------- 233 (477)
T 2id5_A 167 -----IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNLTSLSITH------- 233 (477)
T ss_dssp -----CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTTCCCSEEEEES-------
T ss_pred -----cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc-ccccCccccEEECcC-------
Confidence 1123355666666666666665444332111 3344443332211100000 011112444444444
Q ss_pred ccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccc
Q 009194 274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353 (540)
Q Consensus 274 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 353 (540)
+. ++..... .+..+++|+.|+++++ .++.+... ....+++|+.|++.++ .+
T Consensus 234 --------------------n~-l~~~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l~~L~~L~L~~n-~l 284 (477)
T 2id5_A 234 --------------------CN-LTAVPYL--AVRHLVYLRFLNLSYN-PISTIEGS----MLHELLRLQEIQLVGG-QL 284 (477)
T ss_dssp --------------------SC-CCSCCHH--HHTTCTTCCEEECCSS-CCCEECTT----SCTTCTTCCEEECCSS-CC
T ss_pred --------------------Cc-ccccCHH--HhcCccccCeeECCCC-cCCccChh----hccccccCCEEECCCC-cc
Confidence 32 1111100 1345666777777666 34444221 3455667777777663 34
Q ss_pred cccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccc
Q 009194 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 405 (540)
+.+.... +..+++|++|+++++ .++.+++ ..+..+++|+.|++++++
T Consensus 285 ~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 285 AVVEPYA---FRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SEECTTT---BTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred ceECHHH---hcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 4443332 456677777777775 5666643 334566777777776644
No 34
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=4.6e-25 Score=233.56 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=29.5
Q ss_pred cCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccce
Q 009194 439 YCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEG 483 (540)
Q Consensus 439 ~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~ 483 (540)
..+++|+.|++++|+ +++.....+...+++|++|++++|. +++
T Consensus 485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 356778888888887 6554344555677888888888876 443
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.6e-22 Score=205.61 Aligned_cols=291 Identities=15% Similarity=0.110 Sum_probs=216.4
Q ss_pred hhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEE
Q 009194 34 TIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113 (540)
Q Consensus 34 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 113 (540)
...++++++++++|.+..++ +..+++|++|++++|.+ ..++ +.++++|++|++++|.+..+| ++.+++|++|
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l--~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL--TNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC--SCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred cccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC--ceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 34688999999999998886 56899999999999997 4443 589999999999999999886 8899999999
Q ss_pred EcCCCccCCcccccCCCCCCEEEecCC-CCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccc
Q 009194 114 CLDWCELADIAAIGQLKKLEILSLAYS-NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (540)
Q Consensus 114 ~l~~~~~~~~~~i~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (540)
++++|.++.. .++++++|++|++++| .+..+ .++.+++|++|++++|. +..++ ++.+++|+.|++++|.+..
T Consensus 133 ~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 133 NCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---cccCCCCCEEECcCCcCCe
Confidence 9999998884 3889999999999999 56566 47899999999999998 66676 6889999999999998761
Q ss_pred ccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEecccccc
Q 009194 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS 271 (540)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (540)
. .++.+++|+.|++++|.+..+| +.. ++|+.|.++.+.+.... ...+++|+.|+++.
T Consensus 206 ---------~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~----- 263 (457)
T 3bz5_A 206 ---------L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQ----- 263 (457)
T ss_dssp ---------C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTT-----
T ss_pred ---------e--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccC-----
Confidence 1 4788999999999999988877 333 78888888665544331 34566677766554
Q ss_pred ccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccc
Q 009194 272 ILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT 351 (540)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 351 (540)
.+|+.+++.++.....+ + .+.+++|+.|++++|..+..++. ..++|+.|++++
T Consensus 264 ------------n~L~~L~l~~n~~~~~~----~-~~~l~~L~~L~Ls~n~~l~~l~~--------~~~~L~~L~l~~-- 316 (457)
T 3bz5_A 264 ------------TDLLEIDLTHNTQLIYF----Q-AEGCRKIKELDVTHNTQLYLLDC--------QAAGITELDLSQ-- 316 (457)
T ss_dssp ------------CCCSCCCCTTCTTCCEE----E-CTTCTTCCCCCCTTCTTCCEEEC--------TTCCCSCCCCTT--
T ss_pred ------------CCCCEEECCCCccCCcc----c-ccccccCCEEECCCCcccceecc--------CCCcceEechhh--
Confidence 34556666655533322 2 45677788888877765555431 234444444433
Q ss_pred cccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccccccc
Q 009194 352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM 409 (540)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 409 (540)
+++|++|+++++ +++.++ +..+++|+.|++++ +++++
T Consensus 317 ---------------~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~-N~l~~ 353 (457)
T 3bz5_A 317 ---------------NPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVN-AHIQD 353 (457)
T ss_dssp ---------------CTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCS-SCCCB
T ss_pred ---------------cccCCEEECCCC-cccccc----cccCCcCcEEECCC-CCCCC
Confidence 356667776664 455542 45677777777776 44544
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.6e-23 Score=219.64 Aligned_cols=304 Identities=14% Similarity=0.158 Sum_probs=209.7
Q ss_pred CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC-c-ccccCCCCCC
Q 009194 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLE 133 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~ 133 (540)
.+.+++.+.+.++.+ ..++..+|.++++|++|++++|.+..++ ..++.+++|++|++++|.++. + ..++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 667888999988875 7788888888999999999999888755 478889999999999998887 3 6678899999
Q ss_pred EEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCc
Q 009194 134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (540)
Q Consensus 134 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (540)
+|++++|.+..+|.. ++.+++|++|++++|. +..++...++.+++|+.|++++|.+.. ..++.+++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~l~~L 194 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIPSL 194 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-----------CCGGGCTTC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-----------cChhhhhhh
Confidence 999999988888877 4889999999999887 555655557889999999998887751 125567888
Q ss_pred cEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeec
Q 009194 213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE 292 (540)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 292 (540)
+.|++++|.+..++. ..+|+.|.++.+.+.... ....++|+.|++++ ..+..+.+ ...+++|+.|++.
T Consensus 195 ~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~~~----~~~~~~L~~L~L~~----n~l~~~~~-l~~l~~L~~L~Ls 262 (597)
T 3oja_B 195 FHANVSYNLLSTLAI---PIAVEELDASHNSINVVR----GPVNVELTILKLQH----NNLTDTAW-LLNYPGLVEVDLS 262 (597)
T ss_dssp SEEECCSSCCSEEEC---CTTCSEEECCSSCCCEEE----CSCCSCCCEEECCS----SCCCCCGG-GGGCTTCSEEECC
T ss_pred hhhhcccCccccccC---CchhheeeccCCcccccc----cccCCCCCEEECCC----CCCCCChh-hccCCCCCEEECC
Confidence 899988887654321 156777777655433221 12235777777776 23332222 2345677777776
Q ss_pred cccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCe
Q 009194 293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI 372 (540)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~ 372 (540)
++.-...... .+..+++|+.|+++++ .++.++. ....+|+|+.|+++++ .++.++.. .+.+++|++
T Consensus 263 ~N~l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~-----~~~~l~~L~~L~Ls~N-~l~~i~~~----~~~l~~L~~ 328 (597)
T 3oja_B 263 YNELEKIMYH---PFVKMQRLERLYISNN-RLVALNL-----YGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLEN 328 (597)
T ss_dssp SSCCCEEESG---GGTTCSSCCEEECTTS-CCCEEEC-----SSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSE
T ss_pred CCccCCCCHH---HhcCccCCCEEECCCC-CCCCCCc-----ccccCCCCcEEECCCC-CCCccCcc----cccCCCCCE
Confidence 6542221111 1456777777777776 4554432 3355777777777764 44454433 455777777
Q ss_pred EEEeeCCCCccccChHHHhhcccccEEEEcccc
Q 009194 373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (540)
Q Consensus 373 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 405 (540)
|++++| .++.++ ...+++|+.|++++++
T Consensus 329 L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 329 LYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred EECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 777775 455553 3456777777777754
No 37
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=6.2e-25 Score=232.54 Aligned_cols=404 Identities=15% Similarity=0.079 Sum_probs=235.8
Q ss_pred CCCCccEEEcccCCCC-------------CccccHHHHhcCccCcEEEcCCCCCCC-CCccccc-CCC-CcEEEcCCCc-
Q 009194 57 QCPNLQLFLLYTEGNG-------------PMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGR-LIN-LQTLCLDWCE- 119 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~-------------~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~-l~~-L~~L~l~~~~- 119 (540)
.+++|++|.+.++... .......++.++++|++|+++++.+.. .+..+.. +++ |++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 6778888888765320 011223444578888888888887653 2333433 344 8888888876
Q ss_pred cCC--c-ccccCCCCCCEEEecCCCCcc-----cchhcCCCCCCCEEECCCCccc----cccchhhhhcCCccceEEccC
Q 009194 120 LAD--I-AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWL----EVIAPNVISKLSQLEELYMGN 187 (540)
Q Consensus 120 ~~~--~-~~i~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~ 187 (540)
+.. . ....++++|++|++++|.+.. ++.....+++|++|+++++... ..++. ++.++++|+.|++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGD 229 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccC
Confidence 332 2 334478888888888886542 3344566788888888877632 22332 256788888888888
Q ss_pred CCcccccccCCCccchhhccCCCCccEEEeecCCCC----CCCccccc-cCccEEEEEecCCCCCCCCccccccccccEE
Q 009194 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE----ILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLM 262 (540)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (540)
|.+. .....+.++++|+.|++..+... .....+.. ++|+.+.+.... ..........+++|++|
T Consensus 230 ~~~~---------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 230 FEIL---------ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKL 298 (592)
T ss_dssp CBGG---------GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEE
T ss_pred ccHH---------HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEE
Confidence 7654 24455677788888888754321 12222222 677777664321 11111124456778888
Q ss_pred EEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeecc----------ccCceeeecccc
Q 009194 263 MLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD----------CSEILHIVGSVR 332 (540)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~~ 332 (540)
+++++. .+... .......+++|+.|++.+. +.+..... ....+++|++|++.+ |..++....
T Consensus 299 ~Ls~~~-l~~~~-~~~~~~~~~~L~~L~L~~~--~~~~~l~~-~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~--- 370 (592)
T 3ogk_B 299 DLLYAL-LETED-HCTLIQKCPNLEVLETRNV--IGDRGLEV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL--- 370 (592)
T ss_dssp EETTCC-CCHHH-HHHHHTTCTTCCEEEEEGG--GHHHHHHH-HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH---
T ss_pred ecCCCc-CCHHH-HHHHHHhCcCCCEEeccCc--cCHHHHHH-HHHhCCCCCEEEeecCccccccccccCccCHHHH---
Confidence 887733 11111 1111234577777777622 21110000 023567788888874 554442211
Q ss_pred ccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEee---CCCCccccCh----HHHhhcccccEEEEcccc
Q 009194 333 RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS---CRKLKYLFSF----SMAKNLLRLQKVKVEDCD 405 (540)
Q Consensus 333 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~---c~~l~~~~~~----~~~~~l~~L~~L~l~~c~ 405 (540)
......+++|++|.+ .|..+++.....+ ...+++|++|.+.+ |+.+++.|.. ..+..+++|++|++++|.
T Consensus 371 ~~l~~~~~~L~~L~l-~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 371 IALAQGCQELEYMAV-YVSDITNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHCTTCSEEEE-EESCCCHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHhhCccCeEEEe-ecCCccHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 002345677888877 4555555433321 22367788888874 5566665322 234567778888887765
Q ss_pred c-cccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccccccee
Q 009194 406 D-LKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGV 484 (540)
Q Consensus 406 ~-l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~ 484 (540)
. +++.. .......+++|+.|++.+|. +++.....+..++++|++|++++|+ +++.
T Consensus 448 ~~l~~~~----------------------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ 503 (592)
T 3ogk_B 448 GGLTDLG----------------------LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSER 503 (592)
T ss_dssp GGCCHHH----------------------HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHH
T ss_pred CCccHHH----------------------HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHH
Confidence 4 33221 00111247899999999885 6654445567888999999999998 5442
Q ss_pred ccccccCCCCccccccccceeecccCCCCC
Q 009194 485 VNTTTLGGRDEFKVFPKLHYLSLHWLPKLS 514 (540)
Q Consensus 485 ~~~~~~~~~~~~~~~~~L~~L~l~~~p~L~ 514 (540)
..... ...+++|++|++++|+ ++
T Consensus 504 ~~~~~------~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 504 AIAAA------VTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HHHHH------HHHCSSCCEEEEESCB-CC
T ss_pred HHHHH------HHhcCccCeeECcCCc-CC
Confidence 21111 2368999999999997 55
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.3e-22 Score=208.87 Aligned_cols=304 Identities=18% Similarity=0.144 Sum_probs=227.6
Q ss_pred cchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC
Q 009194 24 VADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101 (540)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 101 (540)
+..++.+|. .+++++++|++++|.+..++. +.++++|++|++++|.+ ..+....|.++++|++|++++|.+..+|
T Consensus 20 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 20 RKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp SCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccC
Confidence 445555564 467899999999999977753 44899999999999986 5554455789999999999999999887
Q ss_pred c-ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhcC
Q 009194 102 S-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKL 177 (540)
Q Consensus 102 ~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 177 (540)
. .+.++++|++|++++|.+.. +..+.++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...+..+
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l 175 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHL 175 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTC
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhccc
Confidence 6 46899999999999999886 578999999999999999988654 468999999999999998 778887778999
Q ss_pred CccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCC-CCCCCccccc-cCccEEEEEecCCCCCCCCccccc
Q 009194 178 SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVK 255 (540)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 255 (540)
++|+.|++++|.+... ....+..+++|+.|++++|. .+.++..... .+|+.|.++.+.+..... .....
T Consensus 176 ~~L~~L~l~~n~i~~~--------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~ 246 (477)
T 2id5_A 176 HGLIVLRLRHLNINAI--------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRH 246 (477)
T ss_dssp TTCCEEEEESCCCCEE--------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH-HHHTT
T ss_pred CCCcEEeCCCCcCcEe--------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH-HHhcC
Confidence 9999999999877621 23457889999999999987 4556655444 799999998776543310 11234
Q ss_pred cccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccc
Q 009194 256 SEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVR 335 (540)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 335 (540)
+++|+.|++++ .. +..... ..+..+++|+.|+++++ +++.+... .
T Consensus 247 l~~L~~L~Ls~---------------------------n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~----~ 291 (477)
T 2id5_A 247 LVYLRFLNLSY---------------------------NP-ISTIEG--SMLHELLRLQEIQLVGG-QLAVVEPY----A 291 (477)
T ss_dssp CTTCCEEECCS---------------------------SC-CCEECT--TSCTTCTTCCEEECCSS-CCSEECTT----T
T ss_pred ccccCeeECCC---------------------------Cc-CCccCh--hhccccccCCEEECCCC-ccceECHH----H
Confidence 55566666554 22 111111 11456788888888877 45544221 4
Q ss_pred cccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194 336 CEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR 379 (540)
Q Consensus 336 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 379 (540)
...+++|+.|+++++ .++.++... +..+++|++|++.+++
T Consensus 292 ~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 292 FRGLNYLRVLNVSGN-QLTTLEESV---FHSVGNLETLILDSNP 331 (477)
T ss_dssp BTTCTTCCEEECCSS-CCSCCCGGG---BSCGGGCCEEECCSSC
T ss_pred hcCcccCCEEECCCC-cCceeCHhH---cCCCcccCEEEccCCC
Confidence 567788888888874 566665543 4567888888888764
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=7.2e-23 Score=208.08 Aligned_cols=391 Identities=15% Similarity=0.042 Sum_probs=195.0
Q ss_pred cCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCcc-------------CcEEEcCCCCCCCCC
Q 009194 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEG-------------LKVLQFPGIGSSSLP 101 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~l~ 101 (540)
...+++++++++.+..+|..+ ++++|++|++++|.. ...+|..+ +++++ +++|+++++.++.+|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~-~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW-ERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHH-HHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcc-cccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 567899999999888888755 889999999998876 44555443 45554 588999999888887
Q ss_pred cccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCcc
Q 009194 102 SSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180 (540)
Q Consensus 102 ~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 180 (540)
.. .++|++|++++|.++. |.. +.+|++|++++|.++.+|.. .++|++|++++|. +..+|. ++++++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp~--~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE--LQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC--CTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCcc--cCCCCCC
Confidence 63 4689999999998887 432 47899999999888876642 2689999999887 566773 8889999
Q ss_pred ceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccc
Q 009194 181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEAS 259 (540)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L 259 (540)
++|++++|.+... +. ...+|++|++++|.+..++. +.. ++|+.|.++.+..... ....++|
T Consensus 156 ~~L~l~~N~l~~l---------p~---~~~~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l-----~~~~~~L 217 (454)
T 1jl5_A 156 KIIDVDNNSLKKL---------PD---LPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKL-----PDLPLSL 217 (454)
T ss_dssp CEEECCSSCCSCC---------CC---CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSC-----CCCCTTC
T ss_pred CEEECCCCcCccc---------CC---CcccccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCCcC-----CCCcCcc
Confidence 9999998876521 11 12488999999888777763 333 7777777765544332 1122466
Q ss_pred cEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccC
Q 009194 260 RLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVF 339 (540)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 339 (540)
+.|+++++.- ..++ . ...+++|+.|++.+..- +. ++ ..+++|+.|+++++ .++.++ ..+
T Consensus 218 ~~L~l~~n~l-~~lp---~-~~~l~~L~~L~l~~N~l-~~----l~--~~~~~L~~L~l~~N-~l~~l~--------~~~ 276 (454)
T 1jl5_A 218 ESIVAGNNIL-EELP---E-LQNLPFLTTIYADNNLL-KT----LP--DLPPSLEALNVRDN-YLTDLP--------ELP 276 (454)
T ss_dssp CEEECCSSCC-SSCC---C-CTTCTTCCEEECCSSCC-SS----CC--SCCTTCCEEECCSS-CCSCCC--------CCC
T ss_pred cEEECcCCcC-Cccc---c-cCCCCCCCEEECCCCcC-Cc----cc--ccccccCEEECCCC-cccccC--------ccc
Confidence 6666665321 2221 1 12345555555554321 11 11 12355566666555 233221 112
Q ss_pred cccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCC
Q 009194 340 PLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPP 419 (540)
Q Consensus 340 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 419 (540)
++|+.|+++++ .++.++. ..++|++|+++++ .++.++. ..++|++|+++++ +++.++
T Consensus 277 ~~L~~L~ls~N-~l~~l~~-------~~~~L~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N-~l~~lp-------- 333 (454)
T 1jl5_A 277 QSLTFLDVSEN-IFSGLSE-------LPPNLYYLNASSN-EIRSLCD-----LPPSLEELNVSNN-KLIELP-------- 333 (454)
T ss_dssp TTCCEEECCSS-CCSEESC-------CCTTCCEEECCSS-CCSEECC-----CCTTCCEEECCSS-CCSCCC--------
T ss_pred CcCCEEECcCC-ccCcccC-------cCCcCCEEECcCC-cCCcccC-----CcCcCCEEECCCC-cccccc--------
Confidence 45566655553 2333221 1145556665554 3443321 1135556665553 333221
Q ss_pred CccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceec-cccccCC------
Q 009194 420 TTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVV-NTTTLGG------ 492 (540)
Q Consensus 420 ~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~-~~~~~~~------ 492 (540)
..+++|+.|+++++ +++.++. .+++|++|+++++.- +.++ ...+...
T Consensus 334 -------------------~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l-~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 334 -------------------ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPL-REFPDIPESVEDLRMNSH 387 (454)
T ss_dssp -------------------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCC-SSCCCCCTTCCEEECCC-
T ss_pred -------------------ccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCC-CcCCCChHHHHhhhhccc
Confidence 12578888888887 5666654 358888888887642 2211 0111110
Q ss_pred -CCccccccccceeecccCCCCC--CCC-CCCceEeecCC
Q 009194 493 -RDEFKVFPKLHYLSLHWLPKLS--SFA-SPEDVIHTEMQ 528 (540)
Q Consensus 493 -~~~~~~~~~L~~L~l~~~p~L~--~~~-~l~~l~i~~c~ 528 (540)
..-...+++|++|++++.+--. .+| +++.+.+.+|.
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSER 427 (454)
T ss_dssp ----------------------------------------
T ss_pred ccccccccCcCCEEECCCCcCCccccchhhHhheeCcCcc
Confidence 0000112788999988765322 343 46777777764
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-22 Score=202.69 Aligned_cols=304 Identities=17% Similarity=0.179 Sum_probs=238.2
Q ss_pred cCCCeEEEccCCCCCCCCCc--CCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcE
Q 009194 36 QKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQT 112 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~ 112 (540)
.++++++++.++.+..+|.. ..+++|++|++++|.+ ..++...|.++++|++|++++|.+..++ ..++++++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 57899999999999888874 3899999999999986 5566555789999999999999998765 56899999999
Q ss_pred EEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194 113 LCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (540)
Q Consensus 113 L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (540)
|++++|.++. | ..+.++++|++|++++|.+..++. .+..+++|++|++++|. +..++ ++.+++|+.|+++++.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccccc
Confidence 9999999988 5 446899999999999999987754 48999999999999988 55554 6789999999999987
Q ss_pred cccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccc
Q 009194 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK 269 (540)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (540)
+. .+...++|+.|++++|.+..++.. ..++|+.|.+..+..... .....+++|++|+++++.-
T Consensus 198 l~-------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 198 LS-------------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp CS-------------EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC
T ss_pred cc-------------ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcC
Confidence 65 234456899999999998777543 237899999987765543 3467889999999998432
Q ss_pred ccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccc
Q 009194 270 VSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMF 349 (540)
Q Consensus 270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 349 (540)
..+ .......+++|+.|.+.+.. ++.+... ...+++|+.|+++++ .++.++. ....+++|+.|++++
T Consensus 261 -~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 261 -EKI--MYHPFVKMQRLERLYISNNR-LVALNLY---GQPIPTLKVLDLSHN-HLLHVER-----NQPQFDRLENLYLDH 327 (390)
T ss_dssp -CEE--ESGGGTTCSSCCEEECCSSC-CCEEECS---SSCCTTCCEEECCSS-CCCCCGG-----GHHHHTTCSEEECCS
T ss_pred -CCc--ChhHccccccCCEEECCCCc-CcccCcc---cCCCCCCCEEECCCC-cceecCc-----cccccCcCCEEECCC
Confidence 222 12222346899999998764 3333221 457899999999998 5665532 446789999999998
Q ss_pred cccccccccccCCCCCCCCCCCeEEEeeCCCCcc
Q 009194 350 LTNLETICYSQLREDQSFSNLRIINVDSCRKLKY 383 (540)
Q Consensus 350 c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 383 (540)
+. ++.++ ...+++|++|++++++ +..
T Consensus 328 N~-i~~~~------~~~~~~L~~L~l~~N~-~~~ 353 (390)
T 3o6n_A 328 NS-IVTLK------LSTHHTLKNLTLSHND-WDC 353 (390)
T ss_dssp SC-CCCCC------CCTTCCCSEEECCSSC-EEH
T ss_pred Cc-cceeC------chhhccCCEEEcCCCC-ccc
Confidence 54 55553 5668999999999964 443
No 41
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=1.4e-24 Score=229.85 Aligned_cols=407 Identities=15% Similarity=0.100 Sum_probs=205.5
Q ss_pred cCCCeEEEccCCCC-CCCC---------------CcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCC-CC
Q 009194 36 QKDPIAISLPHRDI-QELP---------------ERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI-GS 97 (540)
Q Consensus 36 ~~~l~~l~l~~~~~-~~l~---------------~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~ 97 (540)
.++++++++.++.. ..+. ... .+++|++|+++++.. ....+..+...+++|++|++.+| .+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 45678888877542 1111 111 567788888887765 44444444446788888888877 44
Q ss_pred CC--CCcccccCCCCcEEEcCCCccCC--cccc----cCCCCCCEEEecCCC--Cc--ccchhcCCCCCCCEEECCCCcc
Q 009194 98 SS--LPSSLGRLINLQTLCLDWCELAD--IAAI----GQLKKLEILSLAYSN--IN--QLPVEIGQLTRLQLLDLSNCWW 165 (540)
Q Consensus 98 ~~--l~~~l~~l~~L~~L~l~~~~~~~--~~~i----~~l~~L~~L~l~~~~--~~--~lp~~~~~l~~L~~L~l~~~~~ 165 (540)
.. ++....++++|++|++++|.+++ +..+ ..+++|+.|++++|. +. .++..+..+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 33 44444577888888888877554 2222 256688888887775 22 2333345567888888887754
Q ss_pred ccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEE-EeecCCCCCCCccccc-cCccEEEEEecC
Q 009194 166 LEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL-EIEVPDAEILPPDFVS-VELQRYKIRIGD 243 (540)
Q Consensus 166 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~-~~L~~L~l~~~~ 243 (540)
...++.. +.++++|++|++..+....... ........+.++++|+.| .+.......++..... ++|+.|.++.+.
T Consensus 224 ~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 224 LEKLATL-LQRAPQLEELGTGGYTAEVRPD--VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp HHHHHHH-HHHCTTCSEEECSBCCCCCCHH--HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred HHHHHHH-HhcCCcceEcccccccCccchh--hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence 5555544 6777888888766543210000 001223456677777777 3333333333322222 666666665444
Q ss_pred CCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeecc--------ccCcccccccCccCCCCccccE
Q 009194 244 GPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET--------LEGVQSVVHELDDGEGFPRLKR 315 (540)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~~~~~~~~~~~~~~~~~L~~ 315 (540)
............+++|++|++.++. .. .....+...+++|+.|++.+ +..+++.... .....+++|+.
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~~--~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~-~l~~~~~~L~~ 376 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDYI--ED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV-SVSMGCPKLES 376 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGGG--HH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH-HHHHHCTTCCE
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCcc--CH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH-HHHHhchhHHH
Confidence 2111000112355666666666531 10 00111222345666666632 2222211000 00123566666
Q ss_pred EeeccccCceeeeccccccccccCcccceeccc-----ccccccccccc-cCC-CCCCCCCCCeEEEeeCCCCccccChH
Q 009194 316 LLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM-----FLTNLETICYS-QLR-EDQSFSNLRIINVDSCRKLKYLFSFS 388 (540)
Q Consensus 316 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~~~~~-~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~ 388 (540)
|.+ +|..++..... .....+|+|+.|++. +|..+++.+.. .+. ....+++|++|++++ .+++.....
T Consensus 377 L~~-~~~~l~~~~~~---~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~ 450 (594)
T 2p1m_B 377 VLY-FCRQMTNAALI---TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEY 450 (594)
T ss_dssp EEE-EESCCCHHHHH---HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHH
T ss_pred HHH-hcCCcCHHHHH---HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHH
Confidence 643 33333321100 011235666666666 44555432211 000 023455666666644 444432222
Q ss_pred HHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcC
Q 009194 389 MAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLG 468 (540)
Q Consensus 389 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~ 468 (540)
....+++|+.|++++|. +++.. .......+++|+.|++++|+- ++.+...+...++
T Consensus 451 l~~~~~~L~~L~L~~~~-i~~~~----------------------~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAG-DSDLG----------------------MHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLE 506 (594)
T ss_dssp HHHHCTTCCEEEEESCC-SSHHH----------------------HHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGG
T ss_pred HHHhchhccEeeccCCC-CcHHH----------------------HHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCC
Confidence 23335666666666554 32221 000112467788888888764 4443334456677
Q ss_pred CCcEEEEecccc
Q 009194 469 QLQHLEIRNCRS 480 (540)
Q Consensus 469 ~L~~L~i~~C~~ 480 (540)
+|++|++++|+.
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 888888888764
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=9.6e-22 Score=207.58 Aligned_cols=301 Identities=18% Similarity=0.188 Sum_probs=236.7
Q ss_pred cCCCeEEEccCCCCCCCCCcC--CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcE
Q 009194 36 QKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQT 112 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~ 112 (540)
..+++.+++.++.+..+|... .+++|++|++++|.+ ..++...|.++++|++|++++|.+..+|. .++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 578899999999998888743 899999999999987 55555557899999999999999988764 5699999999
Q ss_pred EEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194 113 LCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (540)
Q Consensus 113 L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (540)
|++++|.++. | ..++++++|++|++++|.+..++. .++.+++|++|++++|. +..++ ++.+++|+.|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCc
Confidence 9999999988 5 456999999999999999987665 58999999999999998 56665 5779999999999987
Q ss_pred cccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccc
Q 009194 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK 269 (540)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (540)
+. .+...++|+.|++++|.+..++... .++|+.|.++.+.+... .....+++|+.|+++++.-
T Consensus 204 l~-------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 204 LS-------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp CS-------------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC
T ss_pred cc-------------cccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCcc
Confidence 65 2445568999999999987666542 37899999987765543 3367889999999998432
Q ss_pred ccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccc
Q 009194 270 VSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMF 349 (540)
Q Consensus 270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 349 (540)
..+ .......+++|+.|.+.++. +..+... ...+|+|+.|+++++ .++.++. ....+++|+.|++++
T Consensus 267 -~~~--~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---~~~l~~L~~L~Ls~N-~l~~i~~-----~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 267 -EKI--MYHPFVKMQRLERLYISNNR-LVALNLY---GQPIPTLKVLDLSHN-HLLHVER-----NQPQFDRLENLYLDH 333 (597)
T ss_dssp -CEE--ESGGGTTCSSCCEEECTTSC-CCEEECS---SSCCTTCCEEECCSS-CCCCCGG-----GHHHHTTCSEEECCS
T ss_pred -CCC--CHHHhcCccCCCEEECCCCC-CCCCCcc---cccCCCCcEEECCCC-CCCccCc-----ccccCCCCCEEECCC
Confidence 222 12222346899999998754 3333221 456999999999998 4555532 456789999999998
Q ss_pred cccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194 350 LTNLETICYSQLREDQSFSNLRIINVDSCR 379 (540)
Q Consensus 350 c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 379 (540)
+. +..++ .+.+++|++|++++++
T Consensus 334 N~-l~~~~------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 334 NS-IVTLK------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SC-CCCCC------CCTTCCCSEEECCSSC
T ss_pred CC-CCCcC------hhhcCCCCEEEeeCCC
Confidence 54 55443 5678999999999975
No 43
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=5e-24 Score=225.69 Aligned_cols=420 Identities=13% Similarity=0.070 Sum_probs=234.1
Q ss_pred CeEEEccCCCCCCCCC-cCCCCCccEEEcccCCCCCccc--------------cHHHHhcCccCcEEEcCCCCCCC-CCc
Q 009194 39 PIAISLPHRDIQELPE-RLQCPNLQLFLLYTEGNGPMQV--------------SDHFFEGMEGLKVLQFPGIGSSS-LPS 102 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~l~~L~~L~l~~~~~~~-l~~ 102 (540)
.+++++..+....... ...+++|++|.+.++.. ..++ ...++..+++|++|+++++.+.. .+.
T Consensus 45 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~ 123 (594)
T 2p1m_B 45 RRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPH-FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123 (594)
T ss_dssp CCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCG-GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred ceEEeeccccccCHHHHHhhCCCceEEeccCCCc-hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence 4566666543221111 22778899999998763 1111 23445678999999999988763 233
Q ss_pred ccc-cCCCCcEEEcCCCc-cCC--c-ccccCCCCCCEEEecCCCCcc-----cchhcCCCCCCCEEECCCCc--cccccc
Q 009194 103 SLG-RLINLQTLCLDWCE-LAD--I-AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCW--WLEVIA 170 (540)
Q Consensus 103 ~l~-~l~~L~~L~l~~~~-~~~--~-~~i~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~--~~~~~~ 170 (540)
.+. .+++|++|++++|. ++. + ..+.++++|++|++++|.++. ++.....+++|++|++++|. ......
T Consensus 124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL 203 (594)
T ss_dssp HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence 343 68899999999984 554 3 444578999999999987552 33444578899999998875 111112
Q ss_pred hhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC-------CCCccccc-cCccEEEEEec
Q 009194 171 PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-------ILPPDFVS-VELQRYKIRIG 242 (540)
Q Consensus 171 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-------~~~~~~~~-~~L~~L~l~~~ 242 (540)
..++.++++|++|++++|... ......+..+++|+.|++..+... .++..+.. ++|+.+.-. .
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~--------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~-~ 274 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPL--------EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF-W 274 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCH--------HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECC-B
T ss_pred HHHHHhCCCCcEEecCCCCcH--------HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCC-c
Confidence 222456799999999887322 124455677889999987765421 11112212 555555210 0
Q ss_pred CCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccc-cccCccCCCCccccEEeeccc
Q 009194 243 DGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSV-VHELDDGEGFPRLKRLLVTDC 321 (540)
Q Consensus 243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 321 (540)
.............+++|++|+++++. .+... ...+...+++|+.|.+.++ +.+. ...+ ...+++|+.|++.+|
T Consensus 275 ~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~-l~~~~~~~~~L~~L~l~~~--~~~~~l~~l--~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 275 DAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYD-LVKLLCQCPKLQRLWVLDY--IEDAGLEVL--ASTCKDLRELRVFPS 348 (594)
T ss_dssp TCCGGGGGGGHHHHTTCCEEECTTCC-CCHHH-HHHHHTTCTTCCEEEEEGG--GHHHHHHHH--HHHCTTCCEEEEECS
T ss_pred ccchhhHHHHHHhhCCCCEEEccCCC-CCHHH-HHHHHhcCCCcCEEeCcCc--cCHHHHHHH--HHhCCCCCEEEEecC
Confidence 00000000012245677777776633 11110 1111223466666666655 1111 0000 223666777766332
Q ss_pred --------cCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEe-----eCCCCccccChH
Q 009194 322 --------SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD-----SCRKLKYLFSFS 388 (540)
Q Consensus 322 --------~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~~~~~~ 388 (540)
..++.. ........+++|+.|.+ +|..+++.....+ ...+++|++|.+. +|..+++.+...
T Consensus 349 ~~~g~~~~~~l~~~---~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 349 EPFVMEPNVALTEQ---GLVSVSMGCPKLESVLY-FCRQMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp CTTCSSCSSCCCHH---HHHHHHHHCTTCCEEEE-EESCCCHHHHHHH--HHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred cccccccCCCCCHH---HHHHHHHhchhHHHHHH-hcCCcCHHHHHHH--HhhCCCcceeEeecccCCCcccccCCchhh
Confidence 222211 00001123566666633 4455544332221 2235667777776 556666443221
Q ss_pred ----HHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhh
Q 009194 389 ----MAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMV 464 (540)
Q Consensus 389 ----~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~ 464 (540)
.+..+++|++|++++ .+++... ......+++|+.|++.+|. +++.....+.
T Consensus 423 ~~~~l~~~~~~L~~L~L~~--~l~~~~~----------------------~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~ 477 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG--LLTDKVF----------------------EYIGTYAKKMEMLSVAFAG-DSDLGMHHVL 477 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS--SCCHHHH----------------------HHHHHHCTTCCEEEEESCC-SSHHHHHHHH
T ss_pred HHHHHHhhCCCccEEeecC--cccHHHH----------------------HHHHHhchhccEeeccCCC-CcHHHHHHHH
Confidence 234566677776654 3333210 0011137899999999986 6555444455
Q ss_pred hhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCC
Q 009194 465 NSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK 512 (540)
Q Consensus 465 ~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~ 512 (540)
.++++|++|++++|+. ++...... ...+++|++|++++|+.
T Consensus 478 ~~~~~L~~L~L~~n~~-~~~~~~~~------~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPF-GDKALLAN------ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCSC-CHHHHHHT------GGGGGGSSEEEEESSCC
T ss_pred hcCCCcCEEECcCCCC-cHHHHHHH------HHhCCCCCEEeeeCCCC
Confidence 7899999999999985 33221111 23589999999999987
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1.5e-20 Score=191.08 Aligned_cols=300 Identities=17% Similarity=0.104 Sum_probs=198.5
Q ss_pred CCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcC
Q 009194 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116 (540)
Q Consensus 37 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~ 116 (540)
.++++++++++.+..+|.. .++|++|++++|.+ ..++. .+++|++|++++|.+..+|.. .++|++|+++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l--~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSL--TELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVS 139 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCC--SSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred cCCCEEEecCCccccCCCC--cCCCCEEEccCCcC--Ccccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECc
Confidence 3568888888888777763 46888888888876 33543 357888888888887776642 2578888888
Q ss_pred CCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccccc
Q 009194 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE 196 (540)
Q Consensus 117 ~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (540)
+|.++..+.++++++|++|++++|.++.+|..+ .+|++|++++|. +..+|. ++.+++|+.|++++|.+...
T Consensus 140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~~l--- 210 (454)
T 1jl5_A 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKKL--- 210 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSC---
T ss_pred CCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCCcC---
Confidence 888777336888888888888888887777543 588888888887 556663 78888888888888876511
Q ss_pred CCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEecccccccccc
Q 009194 197 GGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (540)
Q Consensus 197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (540)
+. ..++|+.|++++|....+|. +.. ++|+.|.++.+..... ....++|+.|+++++.- ..++
T Consensus 211 -------~~--~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l-----~~~~~~L~~L~l~~N~l-~~l~- 273 (454)
T 1jl5_A 211 -------PD--LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTL-----PDLPPSLEALNVRDNYL-TDLP- 273 (454)
T ss_dssp -------CC--CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSC-----CSCCTTCCEEECCSSCC-SCCC-
T ss_pred -------CC--CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcc-----cccccccCEEECCCCcc-cccC-
Confidence 11 12478888888888777774 333 7788888866554433 12346788888876321 2221
Q ss_pred chhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccc
Q 009194 276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355 (540)
Q Consensus 276 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 355 (540)
..+++|+.|++.++. ++.+ + ...++|++|+++++ .++.+. ...++|+.|++++ ..++.
T Consensus 274 -----~~~~~L~~L~ls~N~-l~~l----~--~~~~~L~~L~l~~N-~l~~i~--------~~~~~L~~L~Ls~-N~l~~ 331 (454)
T 1jl5_A 274 -----ELPQSLTFLDVSENI-FSGL----S--ELPPNLYYLNASSN-EIRSLC--------DLPPSLEELNVSN-NKLIE 331 (454)
T ss_dssp -----CCCTTCCEEECCSSC-CSEE----S--CCCTTCCEEECCSS-CCSEEC--------CCCTTCCEEECCS-SCCSC
T ss_pred -----cccCcCCEEECcCCc-cCcc----c--CcCCcCCEEECcCC-cCCccc--------CCcCcCCEEECCC-Ccccc
Confidence 124677777776643 2221 1 12357888888777 344331 1124788888877 34554
Q ss_pred cccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccccccc
Q 009194 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM 409 (540)
Q Consensus 356 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 409 (540)
++. .+++|++|++++| .++.+|. .+++|+.|+++++ .++.
T Consensus 332 lp~-------~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N-~l~~ 371 (454)
T 1jl5_A 332 LPA-------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYN-PLRE 371 (454)
T ss_dssp CCC-------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSS
T ss_pred ccc-------cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCC-CCCc
Confidence 332 2578888888876 5776654 3678888888874 4443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6.1e-21 Score=186.45 Aligned_cols=291 Identities=14% Similarity=0.137 Sum_probs=171.4
Q ss_pred CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEE
Q 009194 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (540)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~ 136 (540)
+++.++++++.. ..+|..+ .++|++|++++|.+..+ |..+.++++|++|++++|.++. +..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL--KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC--SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCc--cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 567777777765 4555433 36777788877777765 3467777888888888877765 46777788888888
Q ss_pred ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (540)
Q Consensus 137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (540)
+++|.++.+|..+. ++|++|++++|. +..++...++.+++|+.|++++|.+.... ..+..++.+ +|+.|+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSG------FEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGG------SCTTSSCSC-CCSCCB
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCC------CCcccccCC-ccCEEE
Confidence 88877777776654 678888887777 56666655677788888888777664111 122344555 777777
Q ss_pred eecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccC
Q 009194 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (540)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (540)
+++|.+..+|..+. ++|+.|.++.+.+..... .....+ ++|+.|++.+..-
T Consensus 179 l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~-~~l~~l---------------------------~~L~~L~L~~N~l 229 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP-ETLNELHLDHNKIQAIEL-EDLLRY---------------------------SKLYRLGLGHNQI 229 (332)
T ss_dssp CCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCCT-TSSTTC---------------------------TTCSCCBCCSSCC
T ss_pred CcCCCCCccCcccc-CCCCEEECCCCcCCccCH-HHhcCC---------------------------CCCCEEECCCCcC
Confidence 87777766665422 344444443322211100 001222 3444444443221
Q ss_pred cccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCC---CCCCCCCCeE
Q 009194 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE---DQSFSNLRII 373 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~~~L~~L 373 (540)
..... ..+..+++|++|+++++ +++.++. ....+++|+.|++++ +.++.++...+.. ...++.|+.|
T Consensus 230 -~~~~~--~~~~~l~~L~~L~L~~N-~l~~lp~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 230 -RMIEN--GSLSFLPTLRELHLDNN-KLSRVPA-----GLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp -CCCCT--TGGGGCTTCCEEECCSS-CCCBCCT-----TGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred -CcCCh--hHhhCCCCCCEEECCCC-cCeecCh-----hhhcCccCCEEECCC-CCCCccChhHccccccccccccccce
Confidence 11110 01446777888888777 4554432 345677788888876 3466655443311 1125677888
Q ss_pred EEeeCCCCc-cccChHHHhhcccccEEEEcccc
Q 009194 374 NVDSCRKLK-YLFSFSMAKNLLRLQKVKVEDCD 405 (540)
Q Consensus 374 ~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~ 405 (540)
.+.+++-.. .+ +...+..+++|+.++++++.
T Consensus 300 ~l~~N~~~~~~~-~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEV-QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGS-CGGGGTTBCCSTTEEC----
T ss_pred EeecCccccccc-Ccccccccchhhhhhccccc
Confidence 888765331 23 23345667788888887754
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=4.7e-21 Score=186.46 Aligned_cols=231 Identities=21% Similarity=0.269 Sum_probs=149.8
Q ss_pred cCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECC
Q 009194 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161 (540)
Q Consensus 83 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 161 (540)
...++++|+++++.+..+|..+.++++|++|++++|.++. |..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4588999999999999999888889999999999999887 788899999999999999888899889999999999998
Q ss_pred CCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEe
Q 009194 162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRI 241 (540)
Q Consensus 162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 241 (540)
+|...+.+|.. ++. .. ....++.+++|+.|++++|.+..+|..
T Consensus 159 ~n~~~~~~p~~-~~~------~~-----------------~~~~~~~l~~L~~L~L~~n~l~~lp~~------------- 201 (328)
T 4fcg_A 159 ACPELTELPEP-LAS------TD-----------------ASGEHQGLVNLQSLRLEWTGIRSLPAS------------- 201 (328)
T ss_dssp EETTCCCCCSC-SEE------EC------------------CCCEEESTTCCEEEEEEECCCCCCGG-------------
T ss_pred CCCCccccChh-Hhh------cc-----------------chhhhccCCCCCEEECcCCCcCcchHh-------------
Confidence 87767777664 332 00 012244556666666666655544443
Q ss_pred cCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccc
Q 009194 242 GDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC 321 (540)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 321 (540)
...+++|++|+++++ .+. ..... +..+++|++|++++|
T Consensus 202 -----------l~~l~~L~~L~L~~N----~l~------------------------~l~~~---l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 202 -----------IANLQNLKSLKIRNS----PLS------------------------ALGPA---IHHLPKLEELDLRGC 239 (328)
T ss_dssp -----------GGGCTTCCEEEEESS----CCC------------------------CCCGG---GGGCTTCCEEECTTC
T ss_pred -----------hcCCCCCCEEEccCC----CCC------------------------cCchh---hccCCCCCEEECcCC
Confidence 222333344444331 000 00000 234555666666655
Q ss_pred cCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEE
Q 009194 322 SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKV 401 (540)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 401 (540)
.....++. ....+++|+.|++++|.....++.. .+.+++|++|++++|+.+..+|. .+.++++|+.+.+
T Consensus 240 ~~~~~~p~-----~~~~l~~L~~L~L~~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l 308 (328)
T 4fcg_A 240 TALRNYPP-----IFGGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILV 308 (328)
T ss_dssp TTCCBCCC-----CTTCCCCCCEEECTTCTTCCBCCTT----GGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEEC
T ss_pred cchhhhHH-----HhcCCCCCCEEECCCCCchhhcchh----hhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeC
Confidence 43333322 3455666666666666655555543 55677777777777777776643 3566777777776
Q ss_pred cc
Q 009194 402 ED 403 (540)
Q Consensus 402 ~~ 403 (540)
..
T Consensus 309 ~~ 310 (328)
T 4fcg_A 309 PP 310 (328)
T ss_dssp CG
T ss_pred CH
Confidence 54
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=4.1e-20 Score=180.42 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=106.9
Q ss_pred CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEE
Q 009194 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (540)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~ 136 (540)
+++.++++++.. ..+|..+ .+.+++|++++|.++.++. .++++++|++|++++|.++. |..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l--~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGL--EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCC--CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCc--cccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 566777776664 4455422 3577777777777776654 57777888888888777765 46777788888888
Q ss_pred ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (540)
Q Consensus 137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (540)
+++|.++.+|..+. ++|++|++++|. +..++...++++++|+.|++++|.+.... .....++++++|+.|+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSG------IENGAFQGMKKLSYIR 177 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGG------BCTTGGGGCTTCCEEE
T ss_pred CCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccC------cChhhccCCCCcCEEE
Confidence 88877777776554 678888888776 55666655777888888888777654111 1234566777888888
Q ss_pred eecCCCCCCCcc
Q 009194 217 IEVPDAEILPPD 228 (540)
Q Consensus 217 l~~~~~~~~~~~ 228 (540)
+++|.+..+|..
T Consensus 178 l~~n~l~~l~~~ 189 (330)
T 1xku_A 178 IADTNITTIPQG 189 (330)
T ss_dssp CCSSCCCSCCSS
T ss_pred CCCCccccCCcc
Confidence 887777666543
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.6e-19 Score=176.22 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=139.1
Q ss_pred CCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcC
Q 009194 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD 116 (540)
Q Consensus 38 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~ 116 (540)
+++.++++++.+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|.+..+ |..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5789999999888887643 37899999999986 556665578999999999999999876 7789999999999999
Q ss_pred CCccCC-cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCcccc
Q 009194 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE 193 (540)
Q Consensus 117 ~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (540)
+|.++. |..+. ++|++|++++|.+..++.. +.++++|++|++++|.... ......++.+++|+.|++++|.+...
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 999887 55544 7999999999999877654 8999999999999987321 13333488999999999999887621
Q ss_pred cccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILP 226 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (540)
+..+ .++|+.|++++|.+..++
T Consensus 187 ---------~~~~--~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 187 ---------PQGL--PPSLTELHLDGNKITKVD 208 (330)
T ss_dssp ---------CSSC--CTTCSEEECTTSCCCEEC
T ss_pred ---------Cccc--cccCCEEECCCCcCCccC
Confidence 1122 278999999999876553
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=2.1e-22 Score=206.38 Aligned_cols=147 Identities=18% Similarity=0.071 Sum_probs=72.8
Q ss_pred CCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCC--CCCCCCCCeEEEeeCCCCccccC
Q 009194 309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE--DQSFSNLRIINVDSCRKLKYLFS 386 (540)
Q Consensus 309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~ 386 (540)
.+++|++|++++| .++.............+++|+.|+++++ .+++.....+.. ....++|++|++++|. ++....
T Consensus 254 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 330 (461)
T 1z7x_W 254 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC 330 (461)
T ss_dssp TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH
Confidence 4567777777766 3433211101112334667777777664 333322111100 1223577777777764 443311
Q ss_pred ---hHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCc-cCCCCccEEEEccCCCccccc---
Q 009194 387 ---FSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGI-YCCQNLTKVTVWSCHRLKYLF--- 459 (540)
Q Consensus 387 ---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~-~~~~~L~~L~l~~C~~l~~l~--- 459 (540)
...+..+++|++|+++++ .+++.+..... ..+ ...++|+.|++++| .+++.+
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~-------------------~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNN-RLEDAGVRELC-------------------QGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred HHHHHHHhhCCCccEEEccCC-ccccccHHHHH-------------------HHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 123445677888887776 45443211000 000 01467777777777 344311
Q ss_pred chhhhhhcCCCcEEEEeccc
Q 009194 460 SYSMVNSLGQLQHLEIRNCR 479 (540)
Q Consensus 460 ~~~~~~~l~~L~~L~i~~C~ 479 (540)
....+..+++|++|++++|+
T Consensus 390 l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHhCCCccEEECCCCC
Confidence 12334566777777777763
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4.4e-20 Score=179.60 Aligned_cols=191 Identities=24% Similarity=0.358 Sum_probs=157.5
Q ss_pred cCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~ 114 (540)
..+++.|+++++.+..+|... .+++|++|++++|.+ ..++..+ .++++|++|++++|.+..+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l--~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL--MELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC--CCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc--cchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 478999999999998888755 899999999999997 3677554 889999999999999999999999999999999
Q ss_pred cCCCccC-C-ccccc---------CCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceE
Q 009194 115 LDWCELA-D-IAAIG---------QLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183 (540)
Q Consensus 115 l~~~~~~-~-~~~i~---------~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 183 (540)
+++|.+. . |..++ ++++|++|++++|.++.+|..++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEE
Confidence 9998744 3 55554 4999999999999999999999999999999999998 6678776 8999999999
Q ss_pred EccCCCcccccccCCCccchhhccCCCCccEEEeecCC-CCCCCccccc-cCccEEEE
Q 009194 184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AEILPPDFVS-VELQRYKI 239 (540)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~-~~L~~L~l 239 (540)
++++|.+.. ..+..++.+++|+.|++++|. .+.+|..+.. ++|+.|.+
T Consensus 235 ~Ls~n~~~~--------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 235 DLRGCTALR--------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp ECTTCTTCC--------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred ECcCCcchh--------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 999987652 234567889999999999987 4555554333 44444444
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1.2e-19 Score=173.29 Aligned_cols=181 Identities=23% Similarity=0.306 Sum_probs=104.8
Q ss_pred hcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCC-CCCC-CcccccCCCC
Q 009194 35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSL-PSSLGRLINL 110 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-~~~l~~l~~L 110 (540)
+++++++++++++.+..++. +..+++|++|++++|.+ ..+....|.++++|++|++++|. +..+ |..+..+++|
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 45566666666666655443 23566666666666654 33333334566666666666665 5544 4455666666
Q ss_pred cEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccC
Q 009194 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (540)
Q Consensus 111 ~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (540)
++|++++|.++. +..+.++++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...+..+++|+.|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence 666666666554 35566666666666666666655543 5566666666666665 4455544456666666666666
Q ss_pred CCcccccccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILP 226 (540)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (540)
|.+.. ..+..+..+++|+.|++++|.+..++
T Consensus 187 n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 187 NRVAH--------VHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp SCCCE--------ECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred Ccccc--------cCHhHccCcccccEeeCCCCcCCcCC
Confidence 65541 11334555666666666666655444
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=5.6e-20 Score=177.77 Aligned_cols=246 Identities=13% Similarity=0.119 Sum_probs=151.1
Q ss_pred CCCeEEEccCCCCC---CCCCcC-CCCCccEEEccc-CCCCCccccHHHHhcCccCcEEEcCCCCCC-CCCcccccCCCC
Q 009194 37 KDPIAISLPHRDIQ---ELPERL-QCPNLQLFLLYT-EGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINL 110 (540)
Q Consensus 37 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L 110 (540)
.++++++++++.+. .+|... ++++|++|++++ |.+ ...++.. +.++++|++|++++|.+. .+|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46777777777774 355433 677777777774 554 3344444 367777777777777775 566667777777
Q ss_pred cEEEcCCCccCC--cccccCCCCCCEEEecCCCCc-ccchhcCCCC-CCCEEECCCCccccccchhhhhcCCccceEEcc
Q 009194 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLT-RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (540)
Q Consensus 111 ~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (540)
++|++++|.++. |..+.++++|++|++++|.++ .+|..+..++ +|++|++++|.....+|.. ++.+. |+.|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 777777777663 566777777777777777766 6676777776 7777777777644455554 56665 7777777
Q ss_pred CCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (540)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (540)
+|.+.. ..+..+.++++|+.|++++|.+...+.. ...+++|++|++++
T Consensus 206 ~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 206 RNMLEG--------DASVLFGSDKNTQKIHLAKNSLAFDLGK------------------------VGLSKNLNGLDLRN 253 (313)
T ss_dssp SSEEEE--------CCGGGCCTTSCCSEEECCSSEECCBGGG------------------------CCCCTTCCEEECCS
T ss_pred CCcccC--------cCCHHHhcCCCCCEEECCCCceeeecCc------------------------ccccCCCCEEECcC
Confidence 765541 1234456667777777776654322211 11234444444444
Q ss_pred cccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCce-eeeccccccccccCccccee
Q 009194 267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEIL-HIVGSVRRVRCEVFPLLEAL 345 (540)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~L~~L 345 (540)
..-....... +..+++|++|+++++. ++ .++ ....+++|+.+
T Consensus 254 ---------------------------N~l~~~~p~~---l~~l~~L~~L~Ls~N~-l~~~ip------~~~~l~~L~~l 296 (313)
T 1ogq_A 254 ---------------------------NRIYGTLPQG---LTQLKFLHSLNVSFNN-LCGEIP------QGGNLQRFDVS 296 (313)
T ss_dssp ---------------------------SCCEECCCGG---GGGCTTCCEEECCSSE-EEEECC------CSTTGGGSCGG
T ss_pred ---------------------------CcccCcCChH---HhcCcCCCEEECcCCc-ccccCC------CCccccccChH
Confidence 2211111111 4467788888888873 43 222 33677888888
Q ss_pred cccccccccc
Q 009194 346 SLMFLTNLET 355 (540)
Q Consensus 346 ~l~~c~~l~~ 355 (540)
++.+.+.+..
T Consensus 297 ~l~~N~~lc~ 306 (313)
T 1ogq_A 297 AYANNKCLCG 306 (313)
T ss_dssp GTCSSSEEES
T ss_pred HhcCCCCccC
Confidence 8888765544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=178.34 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=120.2
Q ss_pred EEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCc
Q 009194 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCE 119 (540)
Q Consensus 41 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~ 119 (540)
..+.+++.++.+|... .++|++|++++|.+ ..++...+.++++|++|++++|.+..+ |..+.++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTC-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcccccccc-cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3677777777777632 24778888888775 455554567778888888888777764 4457777788888888887
Q ss_pred cCC-c-ccccCCCCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194 120 LAD-I-AAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (540)
Q Consensus 120 ~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (540)
++. + ..++++++|++|++++|.++.+|. .+..+++|++|++++|..+..++...++.+++|++|++++|.+..
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 188 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--- 188 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---
Confidence 776 4 347777888888888877777776 467777888888777744556654446777777777777776541
Q ss_pred cCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194 196 EGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (540)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (540)
..+..++++++|++|++++|....++.
T Consensus 189 -----~~~~~l~~l~~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 189 -----YEPKSLKSIQNVSHLILHMKQHILLLE 215 (353)
T ss_dssp -----ECTTTTTTCSEEEEEEEECSCSTTHHH
T ss_pred -----cCHHHHhccccCCeecCCCCccccchh
Confidence 123456666777777777766554443
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=4e-19 Score=173.51 Aligned_cols=290 Identities=13% Similarity=0.108 Sum_probs=196.1
Q ss_pred CCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcC
Q 009194 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD 116 (540)
Q Consensus 38 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~ 116 (540)
.++.++++++.+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|.+..+ |..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5889999999888888754 47899999999986 555555568999999999999999875 6788999999999999
Q ss_pred CCccCC-cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCcccc
Q 009194 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE 193 (540)
Q Consensus 117 ~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (540)
+|.++. |..+. ++|++|++++|.+..+|.. +..+++|++|++++|.... ......++.+ +|+.|++++|.+..
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 999887 55554 7999999999999888765 8899999999999987321 1333335666 89999999987762
Q ss_pred cccCCCccchhhccCCCCccEEEeecCCCCCCCcc-ccc-cCccEEEEEecCCCCCCCCccccccccccEEEEecccccc
Q 009194 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPD-FVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS 271 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (540)
.+..+ .++|+.|++++|.+..++.. +.. ++|+.|.++.+.+..... .....+++|+.|++++
T Consensus 187 --------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~----- 250 (332)
T 2ft3_A 187 --------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDN----- 250 (332)
T ss_dssp --------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCS-----
T ss_pred --------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCC-----
Confidence 12222 26899999999998777643 333 788888886654433211 0133445555555554
Q ss_pred ccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeecccccc--ccccCcccceecccc
Q 009194 272 ILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRV--RCEVFPLLEALSLMF 349 (540)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~ 349 (540)
.. ++.+... +..+++|+.|+++++ .++.++...... ....++.|+.|++.+
T Consensus 251 ----------------------N~-l~~lp~~---l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 251 ----------------------NK-LSRVPAG---LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp ----------------------SC-CCBCCTT---GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred ----------------------Cc-CeecChh---hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeec
Confidence 21 1111111 446778888888877 455553221110 112357788888887
Q ss_pred cccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194 350 LTNLETICYSQLREDQSFSNLRIINVDSCR 379 (540)
Q Consensus 350 c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 379 (540)
.+ +..+...... +..+++|+.+.++++.
T Consensus 304 N~-~~~~~~~~~~-~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NP-VPYWEVQPAT-FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SS-SCGGGSCGGG-GTTBCCSTTEEC----
T ss_pred Cc-ccccccCccc-ccccchhhhhhccccc
Confidence 65 3322211111 5668888888888764
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=2e-19 Score=173.93 Aligned_cols=249 Identities=14% Similarity=0.141 Sum_probs=178.0
Q ss_pred CCccEEEcccCCCCCc--cccHHHHhcCccCcEEEcCC-CCCC-CCCcccccCCCCcEEEcCCCccCC--cccccCCCCC
Q 009194 59 PNLQLFLLYTEGNGPM--QVSDHFFEGMEGLKVLQFPG-IGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKL 132 (540)
Q Consensus 59 ~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L 132 (540)
.+++.|+++++.+ .. .++.. +.++++|++|++++ +.+. .+|..++++++|++|++++|.++. |..+.++++|
T Consensus 50 ~~l~~L~L~~~~l-~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNL-PKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCC-SSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCc-cCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 5788899998887 44 55554 47889999999985 7665 578888889999999999888874 6788889999
Q ss_pred CEEEecCCCCc-ccchhcCCCCCCCEEECCCCccccccchhhhhcCC-ccceEEccCCCcccccccCCCccchhhccCCC
Q 009194 133 EILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSGWEKVEGGSNASLVELERLT 210 (540)
Q Consensus 133 ~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 210 (540)
++|++++|.+. .+|..+..+++|++|++++|...+.+|.. ++.++ +|+.|++++|.+.. ..+..+..++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~--------~~~~~~~~l~ 198 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG--------KIPPTFANLN 198 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE--------ECCGGGGGCC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec--------cCChHHhCCc
Confidence 99999988887 67888888999999999888855577766 77777 88888888887651 2234555565
Q ss_pred CccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceee
Q 009194 211 ELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLW 290 (540)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 290 (540)
|+.|++++|.+....... ...+++|+.|++++ ..+.
T Consensus 199 -L~~L~Ls~N~l~~~~~~~-----------------------~~~l~~L~~L~L~~----N~l~---------------- 234 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVL-----------------------FGSDKNTQKIHLAK----NSLA---------------- 234 (313)
T ss_dssp -CSEEECCSSEEEECCGGG-----------------------CCTTSCCSEEECCS----SEEC----------------
T ss_pred -ccEEECcCCcccCcCCHH-----------------------HhcCCCCCEEECCC----Ccee----------------
Confidence 888888877654322210 23445566666555 1111
Q ss_pred eccccCcccccccCccCCCCccccEEeeccccCce-eeeccccccccccCcccceeccccccccc-ccccccCCCCCCCC
Q 009194 291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEIL-HIVGSVRRVRCEVFPLLEALSLMFLTNLE-TICYSQLREDQSFS 368 (540)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~ 368 (540)
.. .+.+..+++|++|+++++. ++ .++. ....+++|+.|+++++. ++ .++. .+.++
T Consensus 235 -------~~----~~~~~~l~~L~~L~Ls~N~-l~~~~p~-----~l~~l~~L~~L~Ls~N~-l~~~ip~-----~~~l~ 291 (313)
T 1ogq_A 235 -------FD----LGKVGLSKNLNGLDLRNNR-IYGTLPQ-----GLTQLKFLHSLNVSFNN-LCGEIPQ-----GGNLQ 291 (313)
T ss_dssp -------CB----GGGCCCCTTCCEEECCSSC-CEECCCG-----GGGGCTTCCEEECCSSE-EEEECCC-----STTGG
T ss_pred -------ee----cCcccccCCCCEEECcCCc-ccCcCCh-----HHhcCcCCCEEECcCCc-ccccCCC-----Ccccc
Confidence 01 1113467899999999984 44 2222 56788999999999864 44 3333 56789
Q ss_pred CCCeEEEeeCCCCcccc
Q 009194 369 NLRIINVDSCRKLKYLF 385 (540)
Q Consensus 369 ~L~~L~l~~c~~l~~~~ 385 (540)
+|+.+.+.+++.+...|
T Consensus 292 ~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 292 RFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GSCGGGTCSSSEEESTT
T ss_pred ccChHHhcCCCCccCCC
Confidence 99999999988776543
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.6e-18 Score=176.09 Aligned_cols=172 Identities=22% Similarity=0.253 Sum_probs=101.0
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~ 117 (540)
.++++..+..+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345666666666665532 24666666666664 3344344566666666666666666543 4556666666666666
Q ss_pred CccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (540)
Q Consensus 118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (540)
|.++. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|..+..++...+..+++|+.|++++|.+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 66665 3 456666666666666666665554 35666666666666655455555544566666666666666554
Q ss_pred ccCCCccchhhccCCCCccEEEeecCCCC
Q 009194 195 VEGGSNASLVELERLTELTTLEIEVPDAE 223 (540)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (540)
.++.+..+++|+.|++++|.+.
T Consensus 199 -------~~~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 199 -------EIPNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp -------SCCCCTTCSSCCEEECTTSCCC
T ss_pred -------cccccCCCcccCEEECCCCccC
Confidence 1123455556666666655544
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=8.7e-19 Score=169.11 Aligned_cols=232 Identities=17% Similarity=0.135 Sum_probs=177.6
Q ss_pred chhhhhhhhhhcCCCeEEEccCCCCCCCCCc--CCCCCccEEEcccCCCCCcc-ccHHHHhcCccCcEEEcCCCCCCCCC
Q 009194 25 ADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEGLKVLQFPGIGSSSLP 101 (540)
Q Consensus 25 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~l~ 101 (540)
.+++.+|. .+++++++|+++++.+..++.. .++++|++|++++|.+.... .+.. +..+++|++|++++|.+..+|
T Consensus 17 ~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 17 KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp SCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEE
T ss_pred CCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccCh
Confidence 34555554 4567899999999999888763 48999999999999861111 1344 467999999999999998888
Q ss_pred cccccCCCCcEEEcCCCccCC-c--ccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEECCCCcccc-ccchhhhhc
Q 009194 102 SSLGRLINLQTLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLE-VIAPNVISK 176 (540)
Q Consensus 102 ~~l~~l~~L~~L~l~~~~~~~-~--~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~ 176 (540)
..+..+++|++|++++|.++. + ..+..+++|++|++++|.+.. .|..+..+++|++|++++|...+ ..|.. ++.
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~ 173 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTE 173 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTT
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-Hhh
Confidence 889999999999999999876 3 578899999999999998874 44558899999999999998443 24544 889
Q ss_pred CCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCcccc
Q 009194 177 LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLV 254 (540)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~ 254 (540)
+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+..++..... ++|+.|.++.+.+....... ..
T Consensus 174 l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~ 244 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQ--------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQ 244 (306)
T ss_dssp CTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS-CC
T ss_pred CcCCCEEECCCCCcCC--------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH-HH
Confidence 9999999999998762 1245678889999999999998777664333 78888888766544332222 23
Q ss_pred cc-ccccEEEEeccc
Q 009194 255 KS-EASRLMMLKGIK 268 (540)
Q Consensus 255 ~~-~~L~~L~l~~~~ 268 (540)
.+ ++|+.|++++.+
T Consensus 245 ~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 245 HFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCTTCCEEECTTCC
T ss_pred hhhccCCEEEccCCC
Confidence 33 478888887743
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=3.2e-21 Score=197.56 Aligned_cols=362 Identities=17% Similarity=0.073 Sum_probs=177.1
Q ss_pred CCCeEEEccCCCCCCCC--C-cCCCCCccEEEcccCCCCCcc---ccHHHHhcCccCcEEEcCCCCCCC-CCcc-cccCC
Q 009194 37 KDPIAISLPHRDIQELP--E-RLQCPNLQLFLLYTEGNGPMQ---VSDHFFEGMEGLKVLQFPGIGSSS-LPSS-LGRLI 108 (540)
Q Consensus 37 ~~l~~l~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~-l~~~-l~~l~ 108 (540)
+++++++++++.+...+ . +..+++|++|++++|.+ ... .....+..+++|++|++++|.+.. .+.. ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCC-CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34566666666653221 1 22556666666666664 211 112334556666666666666543 1111 12233
Q ss_pred ----CCcEEEcCCCccCC------cccccCCCCCCEEEecCCCCcc-----cchh-cCCCCCCCEEECCCCccccc----
Q 009194 109 ----NLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNINQ-----LPVE-IGQLTRLQLLDLSNCWWLEV---- 168 (540)
Q Consensus 109 ----~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~~~~-----lp~~-~~~l~~L~~L~l~~~~~~~~---- 168 (540)
+|++|++++|.++. +..+.++++|++|++++|.+.. +... ....++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 46666666666552 3555666666666666665542 1111 12244566666666652221
Q ss_pred cchhhhhcCCccceEEccCCCcccccccCCCccchhhcc-CCCCccEEEeecCCCCCC-----Cccccc-cCccEEEEEe
Q 009194 169 IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTLEIEVPDAEIL-----PPDFVS-VELQRYKIRI 241 (540)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-----~~~~~~-~~L~~L~l~~ 241 (540)
++.. ++.+++|++|++++|.+..... ......+. ..++|++|++++|.+... +..+.. ++|+.|.++.
T Consensus 162 l~~~-l~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 162 LASV-LRAKPDFKELTVSNNDINEAGV----RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHH-HHHCTTCCEEECCSSBCHHHHH----HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHH-HhhCCCCCEEECcCCCcchHHH----HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 1222 4455666666666665431100 00111111 244666666666654432 222222 5666666654
Q ss_pred cCCCCCCC----CccccccccccEEEEecccccccccc--chhhhhhhcccceeeeccccCcccccccCc--cCCCCccc
Q 009194 242 GDGPEDEF----DPLLVKSEASRLMMLKGIKKVSILQE--NDGTKMLLQRTEDLWLETLEGVQSVVHELD--DGEGFPRL 313 (540)
Q Consensus 242 ~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~L 313 (540)
+.+..... .......++|++|+++++. .+.... .......+++|+.|++.+..-.......+. .....++|
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 315 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc
Confidence 33211100 0001135678888887732 111100 011112257788888876542111111110 01234688
Q ss_pred cEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCC--CCCCCCCCeEEEeeCCCCcccc---ChH
Q 009194 314 KRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE--DQSFSNLRIINVDSCRKLKYLF---SFS 388 (540)
Q Consensus 314 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~---~~~ 388 (540)
++|++++|. ++.............+++|+.|+++++ .+++.....+.. ....++|++|++++| .+++.. ...
T Consensus 316 ~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~ 392 (461)
T 1z7x_W 316 ESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAA 392 (461)
T ss_dssp CEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH
T ss_pred eeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHH
Confidence 888888884 332211111113345688888888876 455443221100 112578899999887 465310 122
Q ss_pred HHhhcccccEEEEcccccccc
Q 009194 389 MAKNLLRLQKVKVEDCDDLKM 409 (540)
Q Consensus 389 ~~~~l~~L~~L~l~~c~~l~~ 409 (540)
.+..+++|++|++++|+ +++
T Consensus 393 ~l~~~~~L~~L~l~~N~-i~~ 412 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNC-LGD 412 (461)
T ss_dssp HHHHCCCCCEEECCSSS-CCH
T ss_pred HHHhCCCccEEECCCCC-CCH
Confidence 35668889999998864 443
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=174.64 Aligned_cols=191 Identities=18% Similarity=0.219 Sum_probs=155.3
Q ss_pred cchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC
Q 009194 24 VADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101 (540)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 101 (540)
+..++++|. .+.+++++|++++|.+..++. +.++++|++|++++|.+ ..++...|.++++|++|++++|.+..+|
T Consensus 40 ~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 40 SGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp STTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 334556565 456799999999999987776 44899999999999986 5565555789999999999999999988
Q ss_pred cc-cccCCCCcEEEcCCCccCC-cc--cccCCCCCCEEEecCC-CCcccc-hhcCCCCCCCEEECCCCccccccchhhhh
Q 009194 102 SS-LGRLINLQTLCLDWCELAD-IA--AIGQLKKLEILSLAYS-NINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (540)
Q Consensus 102 ~~-l~~l~~L~~L~l~~~~~~~-~~--~i~~l~~L~~L~l~~~-~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 175 (540)
.. ++++++|++|++++|.++. +. .+.++++|++|++++| .+..++ ..+..+++|++|++++|. +...+...++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~ 195 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLK 195 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHh
Confidence 75 7899999999999999887 44 7899999999999999 577664 568999999999999998 4555434489
Q ss_pred cCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194 176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILP 226 (540)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (540)
.+++|++|++++|.+... ....+..+++|+.|++++|.+..++
T Consensus 196 ~l~~L~~L~l~~n~l~~~--------~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILL--------LEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TCSEEEEEEEECSCSTTH--------HHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ccccCCeecCCCCccccc--------hhhhhhhcccccEEECCCCcccccc
Confidence 999999999999876511 1122456889999999999876554
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.3e-18 Score=167.83 Aligned_cols=176 Identities=22% Similarity=0.186 Sum_probs=144.3
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC---CcccccCCCCcEEEcC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL---PSSLGRLINLQTLCLD 116 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~l~~l~~L~~L~l~ 116 (540)
++++.+++.+..+|... .+++++|++++|.+ ..++.++|.++++|++|++++|.+..+ +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46888888888888743 36899999999987 577777788999999999999998754 5667789999999999
Q ss_pred CCccCC-cccccCCCCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (540)
Q Consensus 117 ~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (540)
+|.+.. +..+..+++|++|++++|.++.++. .+..+++|++|++++|. +...+...++.+++|++|++++|.+..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~- 164 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE- 164 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc-
Confidence 999887 7779999999999999998887764 68899999999999988 444444448889999999999987651
Q ss_pred cccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILP 226 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (540)
...+..+..+++|+.|++++|.+..++
T Consensus 165 ------~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 165 ------NFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp ------GEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ------ccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 123456788899999999999876553
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=4.6e-18 Score=172.69 Aligned_cols=231 Identities=16% Similarity=0.179 Sum_probs=185.7
Q ss_pred CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (540)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 100 (540)
.+..++.+|. .++++++.+++++|.+..++. +.++++|++|++++|.+ ..++...|.++++|++|++++|.+..+
T Consensus 51 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 51 VRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCee
Confidence 3445556664 567899999999999977653 44899999999999987 566666689999999999999999988
Q ss_pred Cc-ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCC-CCcccch-hcCCCCCCCEEECCCCccccccchhhhh
Q 009194 101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (540)
Q Consensus 101 ~~-~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 175 (540)
|. .+..+++|++|++++|.++. + ..+.++++|++|++++| .+..++. .+.++++|++|++++|. +..+|. +.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~ 204 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LT 204 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cC
Confidence 75 68999999999999999987 4 68999999999999996 6777766 48899999999999998 778886 89
Q ss_pred cCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCccc
Q 009194 176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLL 253 (540)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~ 253 (540)
.+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+..++..... ++|+.|+++.+.+..... ...
T Consensus 205 ~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~ 275 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSA--------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH-DLF 275 (440)
T ss_dssp TCSSCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT-TTT
T ss_pred CCcccCEEECCCCccCc--------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh-hHh
Confidence 99999999999998762 2245688899999999999998777655433 788888886655443321 113
Q ss_pred cccccccEEEEeccc
Q 009194 254 VKSEASRLMMLKGIK 268 (540)
Q Consensus 254 ~~~~~L~~L~l~~~~ 268 (540)
..+++|+.|++++.+
T Consensus 276 ~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 276 TPLHHLERIHLHHNP 290 (440)
T ss_dssp SSCTTCCEEECCSSC
T ss_pred ccccCCCEEEcCCCC
Confidence 456778888887744
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=2.3e-17 Score=172.81 Aligned_cols=261 Identities=18% Similarity=0.113 Sum_probs=193.2
Q ss_pred hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~ 114 (540)
...+++.++++++.+..+|.... ++|+.|++++|.+ ..++. .+++|++|++++|.++.+|. .+++|++|+
T Consensus 38 ~~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l--~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 38 LNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELS 107 (622)
T ss_dssp HHHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC--SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred cCCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCC--CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence 34579999999999998887544 8999999999986 55664 68999999999999998887 789999999
Q ss_pred cCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (540)
Q Consensus 115 l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (540)
+++|.++. |. .+.+|+.|++++|.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+..
T Consensus 108 Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 108 IFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp ECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC-
T ss_pred CcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC-
Confidence 99999888 44 678999999999999988874 5899999999987 666664 35789999999987761
Q ss_pred cccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccccccc
Q 009194 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL 273 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (540)
. . ..+++|+.|++++|.+..++.. .++|+.|.+..+.+... ..
T Consensus 176 --------l-~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l-----~~------------------- 218 (622)
T 3g06_A 176 --------L-P--MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSL-----PA------------------- 218 (622)
T ss_dssp --------C-C--CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSC-----CC-------------------
T ss_pred --------C-c--ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCccccc-----CC-------------------
Confidence 1 1 4568899999999988776643 24555555543333222 11
Q ss_pred ccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccc
Q 009194 274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353 (540)
Q Consensus 274 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 353 (540)
.+++|+.|++.++. ++.+ ...+++|+.|+++++ +++.++ . .+++|+.|+++++ .+
T Consensus 219 --------~~~~L~~L~Ls~N~-L~~l------p~~l~~L~~L~Ls~N-~L~~lp-------~-~~~~L~~L~Ls~N-~L 273 (622)
T 3g06_A 219 --------LPSGLKELIVSGNR-LTSL------PVLPSELKELMVSGN-RLTSLP-------M-LPSGLLSLSVYRN-QL 273 (622)
T ss_dssp --------CCTTCCEEECCSSC-CSCC------CCCCTTCCEEECCSS-CCSCCC-------C-CCTTCCEEECCSS-CC
T ss_pred --------CCCCCCEEEccCCc-cCcC------CCCCCcCcEEECCCC-CCCcCC-------c-ccccCcEEeCCCC-CC
Confidence 12455555555432 2221 135678999999887 566552 2 5788999999885 67
Q ss_pred cccccccCCCCCCCCCCCeEEEeeCCCCccc
Q 009194 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYL 384 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 384 (540)
+.++.. +..+++|+.|++++++ ++..
T Consensus 274 ~~lp~~----l~~l~~L~~L~L~~N~-l~~~ 299 (622)
T 3g06_A 274 TRLPES----LIHLSSETTVNLEGNP-LSER 299 (622)
T ss_dssp CSCCGG----GGGSCTTCEEECCSCC-CCHH
T ss_pred CcCCHH----HhhccccCEEEecCCC-CCCc
Confidence 766543 6678999999999975 4443
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=4.4e-18 Score=173.48 Aligned_cols=176 Identities=23% Similarity=0.236 Sum_probs=115.9
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~ 117 (540)
.+.++..+..+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456666666666666532 25677777777765 4444444567777777777777776543 5566777777777777
Q ss_pred CccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (540)
Q Consensus 118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (540)
|.++. + ..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+..+++|+.|++++|.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 77665 3 456677777777777777776655 36677777777777765566666655677777777777777654
Q ss_pred ccCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (540)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (540)
.+..+..+++|+.|++++|.+..++.
T Consensus 210 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 210 -------DMPNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp -------SCCCCTTCTTCCEEECTTSCCSEECG
T ss_pred -------ccccccccccccEEECcCCcCcccCc
Confidence 12345666777777777777655533
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=5.4e-18 Score=172.82 Aligned_cols=231 Identities=17% Similarity=0.164 Sum_probs=185.0
Q ss_pred CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (540)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 100 (540)
.+..++.+|. .+++++++|++++|.+..++. +.++++|+.|++++|.+ ..++...|.++++|++|++++|.+..+
T Consensus 62 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 62 TRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp CSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCcc
Confidence 3445556564 467899999999999977643 44899999999999987 556656678999999999999999987
Q ss_pred Cc-ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCC-CCcccchh-cCCCCCCCEEECCCCccccccchhhhh
Q 009194 101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (540)
Q Consensus 101 ~~-~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~-~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~ 175 (540)
|. .+..+++|++|++++|.++. + ..+.++++|++|++++| .+..++.. +..+++|++|++++|. +..+|. +.
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~ 215 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LT 215 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CT
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--cc
Confidence 75 47899999999999999987 4 68999999999999995 77777764 8899999999999998 777775 88
Q ss_pred cCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCccc
Q 009194 176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLL 253 (540)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~ 253 (540)
.+++|+.|++++|.+.. ..+..+.++++|+.|++++|.+..++..... ++|+.|+++.+.+..... ...
T Consensus 216 ~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~ 286 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPE--------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-DLF 286 (452)
T ss_dssp TCTTCCEEECTTSCCSE--------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TSS
T ss_pred ccccccEEECcCCcCcc--------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-HHh
Confidence 99999999999998762 2245688999999999999998766554333 788888887665443321 113
Q ss_pred cccccccEEEEeccc
Q 009194 254 VKSEASRLMMLKGIK 268 (540)
Q Consensus 254 ~~~~~L~~L~l~~~~ 268 (540)
..+++|+.|++++.+
T Consensus 287 ~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 287 TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEccCCC
Confidence 456788888887754
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=6.6e-18 Score=161.10 Aligned_cols=193 Identities=19% Similarity=0.209 Sum_probs=155.4
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~ 117 (540)
-+.++.+++.+..+|.. ..+++++|++++|.+ ..++...|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVG-IPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSSCCTT-CCTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcccCCcC-CCCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 47888888888888763 357999999999997 566666678999999999999999875 67889999999999999
Q ss_pred Cc-cCC--cccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194 118 CE-LAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (540)
Q Consensus 118 ~~-~~~--~~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (540)
|. +.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++...++.+++|+.|++++|.+...
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc
Confidence 97 776 57899999999999999998876 4558899999999999998 6777766688999999999999977611
Q ss_pred cccCCCccchhhccCCCCccEEEeecCCCCCC-Cccccc-cCccEEEEEecC
Q 009194 194 KVEGGSNASLVELERLTELTTLEIEVPDAEIL-PPDFVS-VELQRYKIRIGD 243 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~-~~L~~L~l~~~~ 243 (540)
....+..+++|+.|++++|.+..+ +..+.. ++|+.|.++.+.
T Consensus 169 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 169 --------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred --------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 123477889999999999987655 333322 555555554433
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.2e-17 Score=157.52 Aligned_cols=191 Identities=21% Similarity=0.221 Sum_probs=157.7
Q ss_pred cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 115 (540)
.+++++++++++.+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|.+..++.. +.+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 456899999999998888644 37899999999997 556556678999999999999999887654 78999999999
Q ss_pred CCCccCC-cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (540)
Q Consensus 116 ~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (540)
++|.++. |..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +..++...+..+++|+.|++++|.+...
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 9999988 7888999999999999999998874 48999999999999998 7788877678999999999999987621
Q ss_pred cccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEE
Q 009194 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKI 239 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l 239 (540)
. ...+.++++|+.|++++|.+..+|..+.. .+|+.+.+
T Consensus 164 ~--------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 164 P--------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp C--------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred C--------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 1 13457889999999999998888876433 44444443
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=3.6e-17 Score=157.59 Aligned_cols=187 Identities=17% Similarity=0.247 Sum_probs=151.2
Q ss_pred cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 115 (540)
.+++++++++++.+..++....+++|+.|++++|.+ ..++. +.++++|++|++++|.+..++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 567999999999888888777899999999999986 45554 688999999999999988876 5788999999999
Q ss_pred CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (540)
Q Consensus 116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (540)
++|.++....+..+++|++|++++|.++.++. +..+++|++|++++|. +..++. +..+++|+.|++++|.+..
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~--- 187 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISD--- 187 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC---
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCc---
Confidence 99998885558899999999999998888776 8889999999999987 666665 7889999999999887751
Q ss_pred cCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEec
Q 009194 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG 242 (540)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~ 242 (540)
...+..+++|+.|++++|.+..++. +.. ++|+.|.++.+
T Consensus 188 -------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 188 -------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp -------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEE
T ss_pred -------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCC
Confidence 2237788899999999998776663 222 55666655443
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=2.9e-17 Score=155.20 Aligned_cols=180 Identities=22% Similarity=0.313 Sum_probs=147.5
Q ss_pred CCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc-cccCCCCcEEEc
Q 009194 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCL 115 (540)
Q Consensus 37 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l 115 (540)
...+.++++++.+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|.+..+|.. +.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35778999999988888643 26899999999986 556655578899999999999999888764 478999999999
Q ss_pred CCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccc
Q 009194 116 DWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (540)
Q Consensus 116 ~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (540)
++|.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE
Confidence 9999887 4 6778999999999999998877655 7899999999999988 777777767889999999999987762
Q ss_pred ccccCCCccchhhccCCCCccEEEeecCCCCCCCcc
Q 009194 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (540)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (540)
. ....+.++++|+.|++++|.+..++..
T Consensus 172 ~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 172 V--------PEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp C--------CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred e--------ChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 1 123477889999999999988777654
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=4.5e-17 Score=170.57 Aligned_cols=257 Identities=19% Similarity=0.104 Sum_probs=173.0
Q ss_pred CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEec
Q 009194 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLA 138 (540)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~ 138 (540)
+++.|+++++.+ ..+|..+ .++|++|++++|.+..+|. .+++|++|++++|.++. |. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L--~~lp~~l---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGL--TTLPDCL---PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCC--SCCCSCC---CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCc--CccChhh---CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 577788887776 4666543 2678888888888777776 56778888888887776 44 66778888888
Q ss_pred CCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEee
Q 009194 139 YSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIE 218 (540)
Q Consensus 139 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 218 (540)
+|.++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.+.. .+ ...++|+.|++.
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~---------l~---~~~~~L~~L~L~ 169 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS---------LP---ALPSELCKLWAY 169 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC---------CC---CCCTTCCEEECC
T ss_pred CCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCC---------cC---CccCCCCEEECC
Confidence 887777776 56778888887776 5566642 4777888887776541 11 123567777777
Q ss_pred cCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcc
Q 009194 219 VPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQ 298 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 298 (540)
+|.+..++. ..++|+.|.++.+.+.. ++ ..+++|+.|.+.++. ++
T Consensus 170 ~N~l~~l~~--~~~~L~~L~Ls~N~l~~--------------------------l~------~~~~~L~~L~L~~N~-l~ 214 (622)
T 3g06_A 170 NNQLTSLPM--LPSGLQELSVSDNQLAS--------------------------LP------TLPSELYKLWAYNNR-LT 214 (622)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSC--------------------------CC------CCCTTCCEEECCSSC-CS
T ss_pred CCCCCCCcc--cCCCCcEEECCCCCCCC--------------------------CC------CccchhhEEECcCCc-cc
Confidence 777666551 12444444443322221 11 123566666665542 22
Q ss_pred cccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeC
Q 009194 299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSC 378 (540)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c 378 (540)
.+ ...+++|+.|+++++ +++.+ + ..+++|+.|+++++ .++.++. .+++|+.|++++|
T Consensus 215 ~l------~~~~~~L~~L~Ls~N-~L~~l-------p-~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 215 SL------PALPSGLKELIVSGN-RLTSL-------P-VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN 271 (622)
T ss_dssp SC------CCCCTTCCEEECCSS-CCSCC-------C-CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS
T ss_pred cc------CCCCCCCCEEEccCC-ccCcC-------C-CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC
Confidence 21 124689999999988 55554 2 55689999999985 6766554 4689999999997
Q ss_pred CCCccccChHHHhhcccccEEEEccccccc
Q 009194 379 RKLKYLFSFSMAKNLLRLQKVKVEDCDDLK 408 (540)
Q Consensus 379 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 408 (540)
+++.+|. .+..+++|+.|++++++--.
T Consensus 272 -~L~~lp~--~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 272 -QLTRLPE--SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCCSCCG--GGGGSCTTCEEECCSCCCCH
T ss_pred -CCCcCCH--HHhhccccCEEEecCCCCCC
Confidence 7888854 36789999999999976443
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=2.1e-17 Score=156.78 Aligned_cols=182 Identities=23% Similarity=0.258 Sum_probs=104.6
Q ss_pred hcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCc
Q 009194 35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQ 111 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~ 111 (540)
++++++++++++|.+..++. +.++++|++|++++|.+ ..++...|.++++|++|++++|.+..++ ..+.++++|+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 44566666666666655543 33566666666666654 3444444566666666666666665543 4556666666
Q ss_pred EEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcc--cchhcCCCCCCCEEECCCCccccccchhhhhcCCccc----eE
Q 009194 112 TLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE----EL 183 (540)
Q Consensus 112 ~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L 183 (540)
+|++++|.+.. + ..++++++|++|++++|.+.. +|..+..+++|++|++++|. +..++...++.+++|+ .|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence 66666666655 2 356666666666666666654 45666666666666666665 4444433345444444 56
Q ss_pred EccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCcc
Q 009194 184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (540)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (540)
++++|.+.. .........+|+.|++++|.+..++..
T Consensus 183 ~ls~n~l~~---------~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 183 DLSLNPMNF---------IQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp ECCSSCCCE---------ECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred ecCCCcccc---------cCccccCCCcccEEECCCCceeecCHh
Confidence 666665541 111222223566666666665555443
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=5.7e-19 Score=171.12 Aligned_cols=269 Identities=13% Similarity=0.001 Sum_probs=159.8
Q ss_pred CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEE
Q 009194 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~ 136 (540)
.+++|++|++++|.+ ..++...|.++++|++|++++|.+...+. +..+++|++|++++|.++.. ...++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEE
T ss_pred cCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEE
Confidence 456777777777765 44554556777777777777777765544 67777777777777776541 1336777777
Q ss_pred ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhc-cCCCCccEE
Q 009194 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTL 215 (540)
Q Consensus 137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L 215 (540)
+++|.+..++. ..+++|++|++++|. +..++...++.+++|+.|++++|.+... .+..+ ..+++|+.|
T Consensus 106 l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 106 AANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL 174 (317)
T ss_dssp CCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred CCCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcc--------cHHHHhhccCcCCEE
Confidence 77777776654 236677777777776 4555443466777777777777766521 12223 356777777
Q ss_pred EeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeecccc
Q 009194 216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295 (540)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (540)
++++|.+..++... .+++|+.|+++++. ...++ .. ...+++|+.|++.+..
T Consensus 175 ~L~~N~l~~~~~~~-------------------------~l~~L~~L~Ls~N~-l~~l~--~~-~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 175 NLQYNFIYDVKGQV-------------------------VFAKLKTLDLSSNK-LAFMG--PE-FQSAAGVTWISLRNNK 225 (317)
T ss_dssp ECTTSCCCEEECCC-------------------------CCTTCCEEECCSSC-CCEEC--GG-GGGGTTCSEEECTTSC
T ss_pred ECCCCcCccccccc-------------------------ccccCCEEECCCCc-CCcch--hh-hcccCcccEEECcCCc
Confidence 77777765443321 23445555554421 11111 11 2234667777776653
Q ss_pred CcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEE
Q 009194 296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINV 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l 375 (540)
++.+... +..+++|+.|++++++-... ........+++|+.+++.+++.++...... ...+.+....-
T Consensus 226 -l~~l~~~---~~~l~~L~~L~l~~N~~~~~----~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~----~~~~~~~~~~~ 293 (317)
T 3o53_A 226 -LVLIEKA---LRFSQNLEHFDLRGNGFHCG----TLRDFFSKNQRVQTVAKQTVKKLTGQNEEE----CTVPTLGHYGA 293 (317)
T ss_dssp -CCEECTT---CCCCTTCCEEECTTCCCBHH----HHHHHHHTCHHHHHHHHHHHHHHHSSSSCC----CSSTTCEEETT
T ss_pred -ccchhhH---hhcCCCCCEEEccCCCccCc----CHHHHHhccccceEEECCCchhccCCchhc----cCCCceecccc
Confidence 2333222 45788999999998852201 111145678889999998877776654332 12233333333
Q ss_pred eeCCCCcc
Q 009194 376 DSCRKLKY 383 (540)
Q Consensus 376 ~~c~~l~~ 383 (540)
..|..+..
T Consensus 294 ~cc~~l~~ 301 (317)
T 3o53_A 294 YCCEDLPA 301 (317)
T ss_dssp EEEBCCTT
T ss_pred eeeccCCh
Confidence 45666654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=7.6e-17 Score=152.33 Aligned_cols=186 Identities=24% Similarity=0.332 Sum_probs=157.6
Q ss_pred hhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-
Q 009194 26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS- 102 (540)
Q Consensus 26 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~- 102 (540)
.++.+|. .+++.+++|+++++.+..++. +.++++|++|++++|.+ ..++..+|.++++|++|++++|.+..+|.
T Consensus 27 ~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 27 KLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 3444453 456789999999999988775 44899999999999986 67777778899999999999999998775
Q ss_pred ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCc
Q 009194 103 SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179 (540)
Q Consensus 103 ~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 179 (540)
.+..+++|++|++++|.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..+++
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCC
Confidence 56899999999999999887 36789999999999999999988876 7899999999999998 77777766889999
Q ss_pred cceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194 180 LEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE 223 (540)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (540)
|+.|++++|.+... ....+..+++|+.|++.+|+..
T Consensus 183 L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 183 LKTLKLDNNQLKRV--------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCcCCcC--------CHHHhccccCCCEEEecCCCee
Confidence 99999999977621 1234678899999999998754
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=9.1e-17 Score=154.76 Aligned_cols=202 Identities=19% Similarity=0.260 Sum_probs=158.5
Q ss_pred EccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC
Q 009194 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD 122 (540)
Q Consensus 43 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 122 (540)
.+..+.+..+.....+++|++|.++++.+ ..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HTTCSSTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred HhCCCCcCceecHHHcCCcCEEEeeCCCc--cCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence 34445554444444788999999999986 44543 5889999999999999998887 8999999999999999988
Q ss_pred cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccc
Q 009194 123 IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS 202 (540)
Q Consensus 123 ~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 202 (540)
+..+.++++|++|++++|.++.++. +..+++|++|++++|. +..++. ++.+++|+.|++++|.+. .
T Consensus 100 ~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~---------~- 165 (308)
T 1h6u_A 100 VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVS---------D- 165 (308)
T ss_dssp CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCC---------C-
T ss_pred chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCC---------C-
Confidence 6689999999999999999998875 8999999999999998 667766 789999999999999775 1
Q ss_pred hhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194 203 LVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (540)
Q Consensus 203 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (540)
...+..+++|+.|++++|.+..++.....++|+.|.++.+.+.... ....+++|+.|++++
T Consensus 166 ~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 166 LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTN 226 (308)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEE
T ss_pred ChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccC
Confidence 2238889999999999999877765222267777777655544332 245566666666665
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=5.8e-18 Score=164.01 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=199.0
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCC
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~ 140 (540)
+...++.+.. ...+..++..+++|++|++++|.+..++ ..+..+++|++|++++|.++....+..+++|++|++++|
T Consensus 13 ~i~~ls~~~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTH--HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred eEeeccccch--hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 3344454443 4556677788899999999999998876 578999999999999999887334999999999999999
Q ss_pred CCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecC
Q 009194 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP 220 (540)
Q Consensus 141 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 220 (540)
.++.+|. .++|++|++++|. +..++. ..+++|+.|++++|.+... ....++.+++|+.|++++|
T Consensus 91 ~l~~l~~----~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 91 YVQELLV----GPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp EEEEEEE----CTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCSG--------GGBCTGGGSSEEEEECTTS
T ss_pred ccccccC----CCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCCc--------cchhhhccCCCCEEECCCC
Confidence 9887764 4899999999988 666654 4578999999999987621 1235677899999999999
Q ss_pred CCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccc
Q 009194 221 DAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSV 300 (540)
Q Consensus 221 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (540)
.+..++.... ...+++|+.|+++++. ...++ +. ..+++|+.|++.+..- +..
T Consensus 155 ~l~~~~~~~~----------------------~~~l~~L~~L~L~~N~-l~~~~---~~-~~l~~L~~L~Ls~N~l-~~l 206 (317)
T 3o53_A 155 EIDTVNFAEL----------------------AASSDTLEHLNLQYNF-IYDVK---GQ-VVFAKLKTLDLSSNKL-AFM 206 (317)
T ss_dssp CCCEEEGGGG----------------------GGGTTTCCEEECTTSC-CCEEE---CC-CCCTTCCEEECCSSCC-CEE
T ss_pred CCCcccHHHH----------------------hhccCcCCEEECCCCc-Ccccc---cc-cccccCCEEECCCCcC-Ccc
Confidence 8765433211 1234566666666522 12221 11 1368999999987643 333
Q ss_pred cccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCC
Q 009194 301 VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRK 380 (540)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 380 (540)
... +..+++|+.|+++++ .++.++. ....+++|+.|++++++--....... .+.+++|+.+.+.+++.
T Consensus 207 ~~~---~~~l~~L~~L~L~~N-~l~~l~~-----~~~~l~~L~~L~l~~N~~~~~~~~~~---~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 207 GPE---FQSAAGVTWISLRNN-KLVLIEK-----ALRFSQNLEHFDLRGNGFHCGTLRDF---FSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp CGG---GGGGTTCSEEECTTS-CCCEECT-----TCCCCTTCCEEECTTCCCBHHHHHHH---HHTCHHHHHHHHHHHHH
T ss_pred hhh---hcccCcccEEECcCC-cccchhh-----HhhcCCCCCEEEccCCCccCcCHHHH---HhccccceEEECCCchh
Confidence 222 557899999999998 6776643 45678999999999865331222222 55688999999987777
Q ss_pred CccccChHHHhhcccccEEEEcccccccc
Q 009194 381 LKYLFSFSMAKNLLRLQKVKVEDCDDLKM 409 (540)
Q Consensus 381 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 409 (540)
++...+.. ...+.+....-..|..+..
T Consensus 275 l~~~~~~~--~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 275 LTGQNEEE--CTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp HHSSSSCC--CSSTTCEEETTEEEBCCTT
T ss_pred ccCCchhc--cCCCceecccceeeccCCh
Confidence 66553321 1122233333345666654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=2.7e-16 Score=149.15 Aligned_cols=215 Identities=16% Similarity=0.202 Sum_probs=164.4
Q ss_pred EEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCc
Q 009194 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCE 119 (540)
Q Consensus 41 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~ 119 (540)
.++..+..+..+|... .+++++|++++|.+ ..++...|.++++|++|++++|.+..++. .+.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4556666667777633 25799999999987 55655557899999999999999987654 78899999999999999
Q ss_pred cCC--cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccc--cchhhhhcCCccceEEccCCCccccc
Q 009194 120 LAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGWEK 194 (540)
Q Consensus 120 ~~~--~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (540)
++. +..+.++++|++|++++|.+..++. .++.+++|++|++++|. +.. +|.. ++.+++|++|++++|.+....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCC
Confidence 887 4789999999999999999987766 58999999999999998 544 4555 899999999999999876321
Q ss_pred ccCCCccchhhccCCCCcc-EEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194 195 VEGGSNASLVELERLTELT-TLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (540)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (540)
. .....+.+++.|. .|++++|.+..++..... .+|+.|.++.+.+..... .....+++|+.|++++
T Consensus 166 ~-----~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 166 C-----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHT 233 (276)
T ss_dssp G-----GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCS
T ss_pred H-----HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH-hHhcccccccEEEccC
Confidence 1 2334445555555 899999998877766554 678888887665443321 1134567777777776
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=3.1e-16 Score=148.31 Aligned_cols=175 Identities=25% Similarity=0.262 Sum_probs=135.8
Q ss_pred hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEE
Q 009194 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTL 113 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L 113 (540)
..++++.+++.++.+..++....+++|+.|++++|.+ ..++ .+.++++|++|++++|.+..++. .+.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3667888898888888887777888889999888886 3333 25788888899988888887654 46788888889
Q ss_pred EcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCc
Q 009194 114 CLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (540)
Q Consensus 114 ~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (540)
++++|.++. + ..++++++|++|++++|.++.+|.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcC
Confidence 888888877 3 5578888888888888888877665 5788888888888887 5666666567888888888888876
Q ss_pred ccccccCCCccchhhccCCCCccEEEeecCCC
Q 009194 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (540)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (540)
... ....++.+++|+.|++.+|..
T Consensus 194 ~~~--------~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 194 KSV--------PDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SCC--------CTTTTTTCTTCCEEECCSSCB
T ss_pred Ccc--------CHHHHhCCcCCCEEEccCCCc
Confidence 521 123467788888888888764
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1.5e-16 Score=151.76 Aligned_cols=171 Identities=23% Similarity=0.323 Sum_probs=125.2
Q ss_pred cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 115 (540)
.+++++++++++.+..++.+..+++|++|++++|.+ ..++. +.++++|++|++++|.+..++. +..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 556788888888777777666778888888888776 34443 5778888888888887777654 777888888888
Q ss_pred CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (540)
Q Consensus 116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (540)
++|.++.+..+..+++|++|++++|.++.+ ..+..+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~---- 191 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC----
Confidence 888777766677788888888888877776 457778888888888776 555554 677888888888877665
Q ss_pred cCCCccchhhccCCCCccEEEeecCCCCCC
Q 009194 196 EGGSNASLVELERLTELTTLEIEVPDAEIL 225 (540)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 225 (540)
.+..+..+++|+.|++++|.....
T Consensus 192 ------~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 192 ------DLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ------BCGGGTTCTTCSEEEEEEEEEECC
T ss_pred ------CChhhccCCCCCEEECcCCcccCC
Confidence 123467777888888877765443
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=5.2e-17 Score=150.54 Aligned_cols=199 Identities=13% Similarity=0.184 Sum_probs=153.1
Q ss_pred hhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCC-CCCCCCC-c
Q 009194 27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP-S 102 (540)
Q Consensus 27 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~ 102 (540)
++++|. +++.++++++++|.+..++. +.++++|++|++++|.. ...++...|.++++|++|++++ |.+..++ .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555565 67789999999999987766 33889999999999862 2566666678899999999998 8888766 4
Q ss_pred ccccCCCCcEEEcCCCccCCcccccCCCCCC---EEEecCC-CCcccchh-cCCCCCCC-EEECCCCccccccchhhhhc
Q 009194 103 SLGRLINLQTLCLDWCELADIAAIGQLKKLE---ILSLAYS-NINQLPVE-IGQLTRLQ-LLDLSNCWWLEVIAPNVISK 176 (540)
Q Consensus 103 ~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~---~L~l~~~-~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l~~ 176 (540)
.+.++++|++|++++|.++..+.+..+++|+ +|++++| .++.+|.. +..+++|+ +|++++|. +..+|...+..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence 6788999999999999888733378888887 9999999 88888765 78899999 99999887 66787764444
Q ss_pred CCccceEEccCCC-cccccccCCCccchhhccCC-CCccEEEeecCCCCCCCccccccCccEEEE
Q 009194 177 LSQLEELYMGNGF-SGWEKVEGGSNASLVELERL-TELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (540)
Q Consensus 177 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 239 (540)
++|+.|++++|. +... ....+..+ ++|+.|++++|.+..+|.. ..++|+.|.+
T Consensus 179 -~~L~~L~L~~n~~l~~i--------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVI--------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp -CEEEEEECTTCTTCCEE--------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred -CCCCEEEcCCCCCcccC--------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 889999999884 5411 12446777 8899999999888777765 2345555544
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=2.7e-16 Score=149.86 Aligned_cols=183 Identities=17% Similarity=0.123 Sum_probs=156.2
Q ss_pred hhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc
Q 009194 26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103 (540)
Q Consensus 26 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 103 (540)
.++.+|. .+++.+++|++++|.+..++. +..+++|+.|++++|.+ ..++.. ..+++|++|++++|.+..+|..
T Consensus 21 ~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~ 95 (290)
T 1p9a_G 21 NLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVD--GTLPVLGTLDLSHNQLQSLPLL 95 (290)
T ss_dssp CCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEECC--SCCTTCCEEECCSSCCSSCCCC
T ss_pred CCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc--CcccCC--CCCCcCCEEECCCCcCCcCchh
Confidence 3444453 456889999999999977643 44899999999999997 444442 6899999999999999999998
Q ss_pred cccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCcc
Q 009194 104 LGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180 (540)
Q Consensus 104 l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 180 (540)
+..+++|++|++++|.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+..+++|
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENL 174 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTC
T ss_pred hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCC
Confidence 9999999999999999988 4 7899999999999999999988876 6889999999999998 778888767899999
Q ss_pred ceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194 181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE 223 (540)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (540)
+.|++++|.+. ..+..+....+|+.+++.+|+..
T Consensus 175 ~~L~L~~N~l~---------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 175 DTLLLQENSLY---------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECCSSCCC---------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCC---------ccChhhcccccCCeEEeCCCCcc
Confidence 99999999887 34455666789999999999854
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=3.9e-16 Score=145.74 Aligned_cols=176 Identities=22% Similarity=0.278 Sum_probs=146.3
Q ss_pred CCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcC
Q 009194 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLD 116 (540)
Q Consensus 38 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~ 116 (540)
..++++++++.+..+|.... ++++.|++++|.+ ..++...|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 46789999999988887543 6899999999997 4555555789999999999999998765 457899999999999
Q ss_pred CCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194 117 WCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (540)
Q Consensus 117 ~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (540)
+|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...++.+++|++|++++|.+...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999887 4 6788999999999999999988876 6889999999999998 7778776688999999999999987621
Q ss_pred cccCCCccchhhccCCCCccEEEeecCCCCCC
Q 009194 194 KVEGGSNASLVELERLTELTTLEIEVPDAEIL 225 (540)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 225 (540)
....+..+++|+.|++.+|.+...
T Consensus 171 --------~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 --------PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --------CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred --------CHHHHhCCCCCCEEEeeCCceeCC
Confidence 123577889999999999986533
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=6.8e-17 Score=156.10 Aligned_cols=81 Identities=25% Similarity=0.305 Sum_probs=36.8
Q ss_pred CccCcEEEcCCCCCC-CCCccc--ccCCCCcEEEcCCCccCC-cccccCC-----CCCCEEEecCCCCcccc-hhcCCCC
Q 009194 84 MEGLKVLQFPGIGSS-SLPSSL--GRLINLQTLCLDWCELAD-IAAIGQL-----KKLEILSLAYSNINQLP-VEIGQLT 153 (540)
Q Consensus 84 l~~L~~L~l~~~~~~-~l~~~l--~~l~~L~~L~l~~~~~~~-~~~i~~l-----~~L~~L~l~~~~~~~lp-~~~~~l~ 153 (540)
+++|++|++++|.+. .+|..+ ..+++|++|++++|.++. |..++.+ ++|++|++++|.+..++ ..++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 444445554444443 234333 444445555554444443 3333333 44445555444444333 3344444
Q ss_pred CCCEEECCCCc
Q 009194 154 RLQLLDLSNCW 164 (540)
Q Consensus 154 ~L~~L~l~~~~ 164 (540)
+|++|++++|.
T Consensus 174 ~L~~L~Ls~N~ 184 (312)
T 1wwl_A 174 ALSTLDLSDNP 184 (312)
T ss_dssp SCCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 45555544444
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1.3e-16 Score=150.93 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=150.6
Q ss_pred hhhhhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCC
Q 009194 31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLIN 109 (540)
Q Consensus 31 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~ 109 (540)
+.-...++++++++++|.+..++.+..+++|++|++++|.+ ..++...|.++++|++|++++|.+..++. .+..+++
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc--CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 33345789999999999998888777999999999999987 56676667899999999999999988765 4789999
Q ss_pred CcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEcc
Q 009194 110 LQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (540)
Q Consensus 110 L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (540)
|++|++++|.++. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...++.+++|+.|+++
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEcc
Confidence 9999999999887 4 5678999999999999999987766 6899999999999998 667777668999999999999
Q ss_pred CCCcccccccCCCccchhhccCCCCccEEEeecCCC-CCCCcc
Q 009194 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA-EILPPD 228 (540)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~ 228 (540)
+|.+. +.+++|+.+++..|.. +.+|..
T Consensus 214 ~N~~~---------------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 214 DNPWD---------------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SSCBC---------------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCCcc---------------ccCcHHHHHHHHHHhCCCcccCc
Confidence 98765 2356777777776663 344443
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=2.4e-16 Score=154.15 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=48.9
Q ss_pred CCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChH
Q 009194 309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS 388 (540)
Q Consensus 309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 388 (540)
.+++|+.|++++|..++.... .....+++|+.|++++|..+....... .+.+++|++|++++| +++..
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~---l~~~~~L~~L~l~~~--i~~~~--- 287 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCF----QEFFQLNYLQHLSLSRCYDIIPETLLE---LGEIPTLKTLQVFGI--VPDGT--- 287 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTS--SCTTC---
T ss_pred hCCCCCEEeCCCCCcCCHHHH----HHHhCCCCCCEeeCCCCCCCCHHHHHH---HhcCCCCCEEeccCc--cCHHH---
Confidence 456666666666643332111 133455777777777776443332222 455788888888887 43321
Q ss_pred HHhhc-ccccEEEEcccccccccc
Q 009194 389 MAKNL-LRLQKVKVEDCDDLKMII 411 (540)
Q Consensus 389 ~~~~l-~~L~~L~l~~c~~l~~~~ 411 (540)
+..+ .+|+.|++. |++++.+.
T Consensus 288 -~~~l~~~l~~L~l~-~n~l~~~~ 309 (336)
T 2ast_B 288 -LQLLKEALPHLQIN-CSHFTTIA 309 (336)
T ss_dssp -HHHHHHHSTTSEES-CCCSCCTT
T ss_pred -HHHHHhhCcceEEe-cccCcccc
Confidence 2222 336666675 46666553
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=3.9e-16 Score=160.06 Aligned_cols=209 Identities=18% Similarity=0.152 Sum_probs=150.7
Q ss_pred cCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEE
Q 009194 36 QKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 113 (540)
.+++++|++++|.+..++. +..+++|++|++++|.+ ...+. +..+++|++|++++|.+..+|. .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC--EEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC--CCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 3478999999998877653 44889999999999886 33333 6889999999999998876553 3789999
Q ss_pred EcCCCccCC-cccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194 114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 114 ~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (540)
++++|.++. +. ..+++|++|++++|.++.+ |..++.+++|++|++++|......|..+.+.+++|+.|++++|.+.
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999999887 33 2467899999999988866 4457889999999999988444455553347899999999998876
Q ss_pred cccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194 192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (540)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (540)
. ......+++|+.|++++|.+..++..+.. ++|+.|+++.+.+...+ .....+++|+.|++++
T Consensus 183 ~----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 183 D----------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRG 246 (487)
T ss_dssp E----------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTT
T ss_pred c----------ccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccc--hhhccCCCCCEEEcCC
Confidence 2 13344688899999999988877776544 67777777554432211 0133445566666655
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=5e-16 Score=143.91 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=135.9
Q ss_pred CCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCC-CCCCCc-ccccCCCCcEEEcCC-CccCC-c-
Q 009194 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPS-SLGRLINLQTLCLDW-CELAD-I- 123 (540)
Q Consensus 49 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~-~l~~l~~L~~L~l~~-~~~~~-~- 123 (540)
+..+|. -.++++.|++++|.+ ..++...|.++++|++|++++|. ++.++. .+.++++|++|++++ +.++. +
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 677777 345899999999986 66776667899999999999997 887765 788999999999998 88887 4
Q ss_pred ccccCCCCCCEEEecCCCCcccchhcCCCCCCC---EEECCCCccccccchhhhhcCCccc-eEEccCCCcccccccCCC
Q 009194 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ---LLDLSNCWWLEVIAPNVISKLSQLE-ELYMGNGFSGWEKVEGGS 199 (540)
Q Consensus 124 ~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~ 199 (540)
..+.++++|++|++++|.++.+|. +..+++|+ +|++++|..+..++...++.+++|+ .|++++|.+....
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~----- 172 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ----- 172 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-----
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-----
Confidence 688999999999999999999987 88888888 9999999337888877688999999 9999998776211
Q ss_pred ccchhhccCCCCccEEEeecCC-CCCCCcc
Q 009194 200 NASLVELERLTELTTLEIEVPD-AEILPPD 228 (540)
Q Consensus 200 ~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~ 228 (540)
...+.. ++|+.|++++|. +..++..
T Consensus 173 ---~~~~~~-~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 173 ---GYAFNG-TKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp ---TTTTTT-CEEEEEECTTCTTCCEECTT
T ss_pred ---HhhcCC-CCCCEEEcCCCCCcccCCHH
Confidence 122333 689999999994 7766554
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=2.4e-15 Score=143.49 Aligned_cols=184 Identities=21% Similarity=0.262 Sum_probs=146.7
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~ 118 (540)
+.++.+....+..+.....+++|+.|++++|.+ ..++. +..+++|++|++++|.+..++. +..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCc--ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 444456666665555555788999999999986 44543 5889999999999999988877 889999999999999
Q ss_pred ccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCC
Q 009194 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG 198 (540)
Q Consensus 119 ~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 198 (540)
.++.+..+..+++|++|++++|.+..++ .+..+++|++|++++|. +..++. ++.+++|+.|++++|.+.
T Consensus 101 ~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~------- 169 (291)
T 1h6t_A 101 KVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS------- 169 (291)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC-------
T ss_pred cCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc-------
Confidence 9988767999999999999999998874 58899999999999988 666643 899999999999999876
Q ss_pred CccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEec
Q 009194 199 SNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG 242 (540)
Q Consensus 199 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~ 242 (540)
.. ..+..+++|+.|++++|.+..++. +.. ++|+.|.++.+
T Consensus 170 --~~-~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 170 --DI-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp --CC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred --cc-hhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence 12 228889999999999999877654 222 56666666543
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.6e-15 Score=158.55 Aligned_cols=174 Identities=24% Similarity=0.320 Sum_probs=150.6
Q ss_pred hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~ 114 (540)
..+.++.|+++++.+..++.+..+++|+.|++++|.+ ..++. +.++++|++|++++|.+..+| .+..+++|++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 4678999999999998888877999999999999987 44554 689999999999999998877 588999999999
Q ss_pred cCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (540)
Q Consensus 115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (540)
+++|.+..+..+..+++|+.|++++|.+..+ ..+..+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~--- 188 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS--- 188 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC---
Confidence 9999998877799999999999999999888 568999999999999998 666655 789999999999999876
Q ss_pred ccCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (540)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (540)
.+..+..+++|+.|++++|.+...|.
T Consensus 189 -------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 -------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred -------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 23568889999999999988654443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=4e-15 Score=138.81 Aligned_cols=163 Identities=21% Similarity=0.277 Sum_probs=139.4
Q ss_pred chhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-
Q 009194 25 ADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP- 101 (540)
Q Consensus 25 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~- 101 (540)
..++.+|. .+++.+++|++++|.+..++. +.++++|++|++++|.+ ..++...|.++++|++|++++|.+..+|
T Consensus 24 ~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 24 KSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp CCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccCh
Confidence 34445454 456889999999999977665 44899999999999987 5566666789999999999999999876
Q ss_pred cccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCC
Q 009194 102 SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178 (540)
Q Consensus 102 ~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 178 (540)
..+..+++|++|++++|.++. + ..+.++++|++|++++|.++.+|. .+..+++|++|++++|. +..++...+..++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCC
Confidence 457899999999999999988 4 567899999999999999998887 48999999999999998 6777776689999
Q ss_pred ccceEEccCCCcc
Q 009194 179 QLEELYMGNGFSG 191 (540)
Q Consensus 179 ~L~~L~l~~~~~~ 191 (540)
+|+.|++++|.+.
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999999999875
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=6.9e-16 Score=158.22 Aligned_cols=240 Identities=13% Similarity=-0.022 Sum_probs=163.4
Q ss_pred CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEE
Q 009194 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~ 136 (540)
.+++|++|++++|.+ ..++...|.++++|++|++++|.+...+. ++.+++|++|++++|.++.. ...++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---~~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE---EECTTCCEEE
T ss_pred cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC---CCCCCcCEEE
Confidence 455899999999986 44555556899999999999999876554 88899999999999987762 1238899999
Q ss_pred ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhcc-CCCCccEE
Q 009194 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTL 215 (540)
Q Consensus 137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L 215 (540)
+++|.+..++. ..+++|++|++++|. +..++...++.+++|+.|++++|.+... .+..+. .+++|+.|
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL 174 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCc--------ChHHHhhhCCcccEE
Confidence 99998887765 357889999999988 5555444478899999999999877621 234443 68899999
Q ss_pred EeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeecccc
Q 009194 216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295 (540)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (540)
++++|.+..++... .+++|+.|+++++. .+.++ .. ...+++|+.|++.+..
T Consensus 175 ~Ls~N~l~~~~~~~-------------------------~l~~L~~L~Ls~N~-l~~~~--~~-~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 175 NLQYNFIYDVKGQV-------------------------VFAKLKTLDLSSNK-LAFMG--PE-FQSAAGVTWISLRNNK 225 (487)
T ss_dssp ECTTSCCCEEECCC-------------------------CCTTCCEEECCSSC-CCEEC--GG-GGGGTTCSEEECTTSC
T ss_pred ecCCCccccccccc-------------------------cCCCCCEEECCCCC-CCCCC--Hh-HcCCCCccEEEecCCc
Confidence 99998876554332 24455555555522 12221 11 2245777777777643
Q ss_pred CcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccccc
Q 009194 296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL 350 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 350 (540)
- ..+... +..+++|+.|++++++-... ........++.|+.+.+..+
T Consensus 226 l-~~lp~~---l~~l~~L~~L~l~~N~l~c~----~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 226 L-VLIEKA---LRFSQNLEHFDLRGNGFHCG----TLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp C-CEECTT---CCCCTTCCEEECTTCCBCHH----HHHHHHTTCHHHHHHHHHHH
T ss_pred C-cccchh---hccCCCCCEEEcCCCCCcCc----chHHHHHhCCCCcEEecccc
Confidence 2 232222 45788999999998852200 11113456777777777543
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=6.7e-16 Score=144.92 Aligned_cols=172 Identities=19% Similarity=0.203 Sum_probs=136.4
Q ss_pred hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~ 114 (540)
...++.++++..+.+..++....+++|+.|++++|.+ ..++ . +..+++|++|++++|.+..++. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 3455667778888887777666888999999999876 4555 2 5788999999999999888877 88899999999
Q ss_pred cCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (540)
Q Consensus 115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (540)
+++|.++....+.. ++|++|++++|.++.++ .+..+++|++|++++|. +..++. ++.+++|+.|++++|.+.
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~--- 163 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT--- 163 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC---
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc---
Confidence 99998887333444 88999999999888876 58889999999999988 666663 788999999999988776
Q ss_pred ccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194 195 VEGGSNASLVELERLTELTTLEIEVPDAEILP 226 (540)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (540)
. ...+..+++|+.|++++|.....+
T Consensus 164 ------~-~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 ------N-TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ------B-CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ------c-hHHhccCCCCCEEeCCCCcccCCc
Confidence 1 156778889999999988765444
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=146.91 Aligned_cols=218 Identities=15% Similarity=0.150 Sum_probs=173.1
Q ss_pred cCCCeEEEccCCCCCC--CCCcC--------CCCCccEEEcccCCCCCccccHHHH-hcCccCcEEEcCCCCCCCCCccc
Q 009194 36 QKDPIAISLPHRDIQE--LPERL--------QCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSLPSSL 104 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~l~~~l 104 (540)
...+++++++++.+.. ++... ++++|++|++++|.+ ....+..+| ..+++|++|++++|.+...|..+
T Consensus 62 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 140 (312)
T 1wwl_A 62 TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWL 140 (312)
T ss_dssp HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHH
T ss_pred HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHH
Confidence 3348888888888743 44322 589999999999987 445665543 78999999999999998888878
Q ss_pred ccC-----CCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcc---cchhc--CCCCCCCEEECCCCcccc---cc
Q 009194 105 GRL-----INLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ---LPVEI--GQLTRLQLLDLSNCWWLE---VI 169 (540)
Q Consensus 105 ~~l-----~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~---lp~~~--~~l~~L~~L~l~~~~~~~---~~ 169 (540)
+.+ ++|++|++++|.+.. + ..++++++|++|++++|.+.. +|..+ ..+++|++|++++|. +. .+
T Consensus 141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 219 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGV 219 (312)
T ss_dssp HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHH
T ss_pred HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHH
Confidence 777 899999999999887 4 889999999999999998653 45555 889999999999998 55 44
Q ss_pred chhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCC
Q 009194 170 APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEF 249 (540)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 249 (540)
+...+..+++|+.|++++|.+.... ....+..+++|+.|++++|.+..+|..+. ++|+.|+++.+.+....
T Consensus 220 ~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p- 290 (312)
T 1wwl_A 220 CSALAAARVQLQGLDLSHNSLRDAA-------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNP- 290 (312)
T ss_dssp HHHHHHTTCCCSEEECTTSCCCSSC-------CCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCC-
T ss_pred HHHHHhcCCCCCEEECCCCcCCccc-------chhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCCh-
Confidence 4444568899999999999876211 12345667899999999999988888766 89999999887765552
Q ss_pred CccccccccccEEEEec
Q 009194 250 DPLLVKSEASRLMMLKG 266 (540)
Q Consensus 250 ~~~~~~~~~L~~L~l~~ 266 (540)
....+++|+.|++++
T Consensus 291 --~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 291 --SPDELPQVGNLSLKG 305 (312)
T ss_dssp --CTTTSCEEEEEECTT
T ss_pred --hHhhCCCCCEEeccC
Confidence 256788999999987
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=7.5e-16 Score=150.57 Aligned_cols=173 Identities=15% Similarity=0.154 Sum_probs=109.3
Q ss_pred CCCeEEEccCCCCCCCCCc-CCC--CCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC--CCcccccCCCCc
Q 009194 37 KDPIAISLPHRDIQELPER-LQC--PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLGRLINLQ 111 (540)
Q Consensus 37 ~~l~~l~l~~~~~~~l~~~-~~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~ 111 (540)
...++++++++.+. +.. ..+ ++++.|.+.+|.+ ....+ .+ .++++|++|++++|.+.. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-~~~~~-~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-DQPLA-EH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-CSCCC-SC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccc-cccch-hh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34677777766553 111 133 6777777777765 22222 22 467777777777777653 566667777777
Q ss_pred EEEcCCCccCC--cccccCCCCCCEEEecCC-CCc--ccchhcCCCCCCCEEECCCC-ccccc--cchhhhhcCC-ccce
Q 009194 112 TLCLDWCELAD--IAAIGQLKKLEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNC-WWLEV--IAPNVISKLS-QLEE 182 (540)
Q Consensus 112 ~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~-~~~~~--~~~~~l~~l~-~L~~ 182 (540)
+|++++|.+.+ +..++++++|++|++++| .++ .++..+..+++|++|++++| . +.. ++. .++.++ +|++
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~-~~~~l~~~L~~ 199 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQV-AVAHVSETITQ 199 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHH-HHHHSCTTCCE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHH-HHHhcccCCCE
Confidence 77777777664 566777777777777777 565 36666777777777777777 4 332 333 366777 7777
Q ss_pred EEccCCCcccccccCCCccchhhccCCCCccEEEeecCC
Q 009194 183 LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (540)
Q Consensus 183 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (540)
|++++|.... .+...+..+..+++|+.|++++|.
T Consensus 200 L~l~~~~~~~-----~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 200 LNLSGYRKNL-----QKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp EECCSCGGGS-----CHHHHHHHHHHCTTCSEEECTTCT
T ss_pred EEeCCCcccC-----CHHHHHHHHhhCCCCCEEeCCCCC
Confidence 7777763210 011234445667777777777776
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=5.5e-16 Score=149.60 Aligned_cols=222 Identities=14% Similarity=0.075 Sum_probs=115.4
Q ss_pred CCCCccEEEcccCCCCCccccHHH--HhcCccCcEEEcCCCCCCC-CCccc--ccCCCCcEEEcCCCccCC--c----cc
Q 009194 57 QCPNLQLFLLYTEGNGPMQVSDHF--FEGMEGLKVLQFPGIGSSS-LPSSL--GRLINLQTLCLDWCELAD--I----AA 125 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~~l--~~l~~L~~L~l~~~~~~~--~----~~ 125 (540)
....++.+.+.++.. .......+ +..+++|++|++++|.+.. .|..+ ..+++|++|++++|.+.. + ..
T Consensus 62 ~~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 334456666665554 21111111 1134557777777766653 44444 666667777777766553 1 23
Q ss_pred ccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccc--cch-hhhhcCCccceEEccCCCcccccccCCCcc
Q 009194 126 IGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEV--IAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNA 201 (540)
Q Consensus 126 i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 201 (540)
+..+++|++|++++|.+..++ ..++.+++|++|++++|...+. ++. ..++.+++|++|++++|.+.... .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~------~ 214 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT------G 214 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH------H
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH------H
Confidence 345667777777777666544 3466667777777776653221 111 11245666777777666554110 1
Q ss_pred chh-hccCCCCccEEEeecCCCCCC-Cccccc----cCccEEEEEecCCCCCCCCccccccccccEEEEecccccccccc
Q 009194 202 SLV-ELERLTELTTLEIEVPDAEIL-PPDFVS----VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (540)
Q Consensus 202 ~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (540)
... -++.+++|++|++++|.+... |..+.. ++|+.|.++.+.+...+. ...++|+.|+++++. .+.++
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~L~~L~Ls~N~-l~~~~- 288 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK----GLPAKLRVLDLSSNR-LNRAP- 288 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS----CCCSCCSCEECCSCC-CCSCC-
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh----hhcCCCCEEECCCCc-CCCCc-
Confidence 111 135566677777777665544 333322 466666665555443211 112577777776622 12211
Q ss_pred chhhhhhhcccceeeeccc
Q 009194 276 NDGTKMLLQRTEDLWLETL 294 (540)
Q Consensus 276 ~~~~~~~~~~L~~L~l~~~ 294 (540)
. ...+++|+.|++.+.
T Consensus 289 -~--~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 289 -Q--PDELPEVDNLTLDGN 304 (310)
T ss_dssp -C--TTSCCCCSCEECSST
T ss_pred -h--hhhCCCccEEECcCC
Confidence 1 233567777766653
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=4e-15 Score=133.31 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=104.7
Q ss_pred CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCE
Q 009194 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI 134 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~ 134 (540)
.+++|+.|++++|.+ ..++ . +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++++++|++
T Consensus 42 ~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINV--TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCC--SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCc--cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 566777777777775 3444 2 467777777777777665554 56777788888888877765 577777888888
Q ss_pred EEecCCCCcc-cchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCcc
Q 009194 135 LSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT 213 (540)
Q Consensus 135 L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 213 (540)
|++++|.++. .|..++.+++|++|++++|..+..++. ++.+++|+.|++++|.+. .+..+..+++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~----------~~~~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH----------DYRGIEDFPKLN 184 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC----------CCTTGGGCSSCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc----------ChHHhccCCCCC
Confidence 8888877763 566677788888888887765666663 677788888888777665 122566777888
Q ss_pred EEEeecCCCC
Q 009194 214 TLEIEVPDAE 223 (540)
Q Consensus 214 ~L~l~~~~~~ 223 (540)
.|++++|.++
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 8888877754
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=4.5e-15 Score=134.30 Aligned_cols=170 Identities=18% Similarity=0.250 Sum_probs=127.5
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~ 118 (540)
+.++..++.+..+|... .++++.|++++|.+ ..++..+|.++++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46677777776666532 45788888888886 45666667788889999998888887765 4578888999999888
Q ss_pred ccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (540)
Q Consensus 119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (540)
.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee----
Confidence 8877 4 5578888899999988888877765 6788889999988887 66677665788888888888887654
Q ss_pred cCCCccchhhccCCCCccEEEeecCCCC-CCCcc
Q 009194 196 EGGSNASLVELERLTELTTLEIEVPDAE-ILPPD 228 (540)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~ 228 (540)
..+++|+.|+++.|.+. .+|..
T Consensus 162 -----------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 -----------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -----------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred -----------cCCCCHHHHHHHHHhCCceeecc
Confidence 24566777777766533 44443
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.7e-14 Score=132.41 Aligned_cols=149 Identities=22% Similarity=0.273 Sum_probs=120.9
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW 117 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~ 117 (540)
.+.++.+++.+..+|... .++|+.|++++|.+ ..+....|.++++|++|++++|.+..+|. .+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456888888888887643 37899999999887 44544556888999999999999888774 458889999999999
Q ss_pred CccCC-c-ccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (540)
|.++. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..++...+..+++|+.|++.+|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 98887 4 55788999999999999888888888889999999999887 66777666788888888888888765
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.5e-14 Score=129.46 Aligned_cols=146 Identities=19% Similarity=0.260 Sum_probs=121.4
Q ss_pred hcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEEC
Q 009194 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDL 160 (540)
Q Consensus 82 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l 160 (540)
..+++|++|+++++.+..+| .+..+++|++|++++|.++.+..+..+++|++|++++|.++. .|..++.+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 57889999999999999888 689999999999999988877789999999999999999885 6778999999999999
Q ss_pred CCCccccccchhhhhcCCccceEEccCCC-cccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEE
Q 009194 161 SNCWWLEVIAPNVISKLSQLEELYMGNGF-SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYK 238 (540)
Q Consensus 161 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~ 238 (540)
++|......+.. ++.+++|++|++++|. +. .+..+..+++|+.|++++|.+..++ .+.. ++|+.|.
T Consensus 120 s~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~----------~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 120 SHSAHDDSILTK-INTLPKVNSIDLSYNGAIT----------DIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp CSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC----------CCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE
T ss_pred cCCccCcHhHHH-HhhCCCCCEEEccCCCCcc----------ccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE
Confidence 999844445554 8999999999999997 43 2246888999999999999987765 2222 5555555
Q ss_pred EE
Q 009194 239 IR 240 (540)
Q Consensus 239 l~ 240 (540)
+.
T Consensus 188 l~ 189 (197)
T 4ezg_A 188 AF 189 (197)
T ss_dssp EC
T ss_pred ee
Confidence 53
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=142.94 Aligned_cols=220 Identities=12% Similarity=0.022 Sum_probs=157.9
Q ss_pred cCCCeEEEccCCCCCC--C---CCcCCCCCccEEEcccCCCCCccccHHHH-hcCccCcEEEcCCCCCCCC-C----ccc
Q 009194 36 QKDPIAISLPHRDIQE--L---PERLQCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSL-P----SSL 104 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~--l---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~l-~----~~l 104 (540)
...++++.+.+..+.. + .....+++|++|++++|.+ ....+..++ .++++|++|++++|.+... + ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3457888888777622 2 2233556799999999887 444444333 6789999999999988752 2 233
Q ss_pred ccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcc---cchh--cCCCCCCCEEECCCCccccccchh---hh
Q 009194 105 GRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQ---LPVE--IGQLTRLQLLDLSNCWWLEVIAPN---VI 174 (540)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~---lp~~--~~~l~~L~~L~l~~~~~~~~~~~~---~l 174 (540)
..+++|++|++++|.+.. +..++.+++|++|++++|.+.. ++.. ++.+++|++|++++|. +..++.. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence 468899999999999876 4788899999999999997653 3333 4688899999999987 5544432 35
Q ss_pred hcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCcccc
Q 009194 175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLV 254 (540)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 254 (540)
+.+++|++|++++|.+....+ .....+..+++|++|++++|.+..+|..+. ++|+.|+++.+.+..+.. ..
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p-----~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~---~~ 291 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVN-----PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQ---PD 291 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCC-----SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCC---TT
T ss_pred hcCCCCCEEECCCCCCCccch-----hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCch---hh
Confidence 778999999999988762110 112223334789999999999888887654 789999998777655422 45
Q ss_pred ccccccEEEEec
Q 009194 255 KSEASRLMMLKG 266 (540)
Q Consensus 255 ~~~~L~~L~l~~ 266 (540)
.+++|+.|++++
T Consensus 292 ~l~~L~~L~L~~ 303 (310)
T 4glp_A 292 ELPEVDNLTLDG 303 (310)
T ss_dssp SCCCCSCEECSS
T ss_pred hCCCccEEECcC
Confidence 678999999987
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=3.2e-15 Score=156.41 Aligned_cols=185 Identities=21% Similarity=0.259 Sum_probs=150.4
Q ss_pred CCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCC
Q 009194 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (540)
Q Consensus 38 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~ 117 (540)
.+.++.+..+.+..+.....+++|+.|.+++|.+ ..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCC--CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCC--CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 3555666666666666666888999999999986 44543 5899999999999999988876 88999999999999
Q ss_pred CccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccC
Q 009194 118 CELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG 197 (540)
Q Consensus 118 ~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 197 (540)
|.+..++.+..+++|+.|++++|.+..++ .+..+++|+.|++++|. +..++. ++.+++|+.|++++|.+.
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~------ 166 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS------ 166 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC------
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC------
Confidence 99988778999999999999999998875 58899999999999998 666643 899999999999999876
Q ss_pred CCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEec
Q 009194 198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG 242 (540)
Q Consensus 198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~ 242 (540)
.... +..+++|+.|++++|.+..++. +.. ++|+.|.+..+
T Consensus 167 ---~~~~-l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 167 ---DIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp ---CCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCSE
T ss_pred ---Cchh-hccCCCCCEEECcCCCCCCChH-HccCCCCCEEEccCC
Confidence 1222 8889999999999999877643 233 77777777543
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=2.1e-14 Score=130.87 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=100.7
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~ 118 (540)
+.++.+++.+..+|.... ++++.|++++|.+ ..++...|.++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456777777777766332 5777777777775 445554556777777777777777654 566777777777777777
Q ss_pred ccCC-c-ccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (540)
.++. + ..+.++++|++|++++|.++.++ ..+..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7766 4 44567777777777777777553 346777777777777776 55555554666777777777766553
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=130.46 Aligned_cols=149 Identities=15% Similarity=0.211 Sum_probs=109.3
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~ 118 (540)
++++++++.+..+|... .+.++.|++++|.+ ....+.++|.++++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 47888888887777633 34567888888876 322234456788888888888888876654 6788888888888888
Q ss_pred ccCC-c-ccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194 119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (540)
.++. + ..+.++++|++|++++|.++.+ |..+..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8776 3 5678888888888888888766 4557788888888888877 55554444777888888888777654
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.2e-13 Score=135.43 Aligned_cols=238 Identities=17% Similarity=0.163 Sum_probs=130.4
Q ss_pred cEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCc-ccchh-cCCCCCCCEEECC-C
Q 009194 88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN-QLPVE-IGQLTRLQLLDLS-N 162 (540)
Q Consensus 88 ~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~-~lp~~-~~~l~~L~~L~l~-~ 162 (540)
++++.+++.++.+|..+ .+++++|++++|.++. + ..+.++++|++|++++|.+. .+|.. +.++++++++... .
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777777777777655 3567888888888776 4 46777888888888887653 45543 5677776654433 3
Q ss_pred CccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecC-CCCCCCccccccCccEEEEEe
Q 009194 163 CWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP-DAEILPPDFVSVELQRYKIRI 241 (540)
Q Consensus 163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~ 241 (540)
+. +..++...++.+++|+.|++++|.+..... ..+....++..+++..+ .+..++....
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~~f----------- 149 (350)
T 4ay9_X 90 NN-LLYINPEAFQNLPNLQYLLISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERNSF----------- 149 (350)
T ss_dssp TT-CCEECTTSBCCCTTCCEEEEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTTSS-----------
T ss_pred Cc-ccccCchhhhhccccccccccccccccCCc--------hhhcccchhhhhhhccccccccccccch-----------
Confidence 33 556655556667777777766665541110 11122234445555432 2332222110
Q ss_pred cCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccc
Q 009194 242 GDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC 321 (540)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 321 (540)
......++.|++++ . .++.+... ....++|+.+.+.++
T Consensus 150 -----------~~~~~~l~~L~L~~---------------------------N-~i~~i~~~---~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 150 -----------VGLSFESVILWLNK---------------------------N-GIQEIHNS---AFNGTQLDELNLSDN 187 (350)
T ss_dssp -----------TTSBSSCEEEECCS---------------------------S-CCCEECTT---SSTTEEEEEEECTTC
T ss_pred -----------hhcchhhhhhcccc---------------------------c-cccCCChh---hccccchhHHhhccC
Confidence 01112233344333 1 11111111 112345666666666
Q ss_pred cCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEE
Q 009194 322 SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKV 401 (540)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 401 (540)
..++.++.. ....+++|+.|++++ +.++.++. +.+.+|+.|.+.++..++.+|+ +..+++|+.+++
T Consensus 188 n~l~~i~~~----~f~~l~~L~~LdLs~-N~l~~lp~------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l 253 (350)
T 4ay9_X 188 NNLEELPND----VFHGASGPVILDISR-TRIHSLPS------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASL 253 (350)
T ss_dssp TTCCCCCTT----TTTTEECCSEEECTT-SCCCCCCS------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEEC
T ss_pred CcccCCCHH----HhccCcccchhhcCC-CCcCccCh------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcC
Confidence 566655432 335566677777766 34555543 2356677777777777777754 456677777777
Q ss_pred cc
Q 009194 402 ED 403 (540)
Q Consensus 402 ~~ 403 (540)
.+
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=5.4e-14 Score=131.91 Aligned_cols=147 Identities=21% Similarity=0.214 Sum_probs=130.1
Q ss_pred hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~ 114 (540)
..+++++++++++.+..++....+++|+.|++++|.+ ..++. +.++++|++|++++|.+..+|.... ++|++|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 4678999999999999888777999999999999987 55555 6899999999999999998876433 9999999
Q ss_pred cCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (540)
+++|.++.+..+.++++|++|++++|.++.++ .+..+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 99999998667999999999999999999887 68999999999999998 556633 899999999999998765
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=1.3e-13 Score=142.68 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=136.2
Q ss_pred cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 115 (540)
..+++.|+++++.+..+|... .++|++|++++|.+ ..++ ..+++|++|++++|.++.+|. +.+ +|++|++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l--~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL--ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC--SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC--cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 458999999999998888754 48899999999987 4666 457999999999999988888 655 8999999
Q ss_pred CCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (540)
Q Consensus 116 ~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (540)
++|.++. |. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|+.|++++|.+...
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~l- 195 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESL- 195 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSC-
T ss_pred CCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCch-
Confidence 9999888 45 78999999999999998887 67899999999988 666776 44 8999999999987621
Q ss_pred ccCCCccchhhccC-----CCCccEEEeecCCCCCCCccccc-cCccEEEEE
Q 009194 195 VEGGSNASLVELER-----LTELTTLEIEVPDAEILPPDFVS-VELQRYKIR 240 (540)
Q Consensus 195 ~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~ 240 (540)
+. +.. .+.|+.|++++|.+..+|..+.. ++|+.|.++
T Consensus 196 --------p~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 196 --------PA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp --------CC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred --------hh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 11 222 22339999999998888876444 455555543
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=5.8e-14 Score=137.76 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=70.4
Q ss_pred EEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-CC-cccccCCCCcE-EEcCC
Q 009194 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LP-SSLGRLINLQT-LCLDW 117 (540)
Q Consensus 41 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~l~~l~~L~~-L~l~~ 117 (540)
.++.+++.+..+|..+ .+++++|++++|.+ ..++.+.|.++++|++|++++|.+.+ +| ..+.+++++++ +.+..
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3444555555555422 23555555555554 44554445555555555555555432 33 23445555443 23333
Q ss_pred CccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCC-ccceEEccCCCcc
Q 009194 118 CELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSG 191 (540)
Q Consensus 118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 191 (540)
+.++. +..+..+++|++|++++|.+..+|.. +....++..+++.++..+..++...+..+. .++.|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 44444 24455555555555555555544432 333444555555443334444433333332 3455555555443
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=6e-15 Score=147.05 Aligned_cols=182 Identities=13% Similarity=0.079 Sum_probs=90.9
Q ss_pred cCCCeEEEccCCCCCC-----CCC-cCCCCCccEEEcccCCC--CCccccHHH------HhcCccCcEEEcCCCCCCC--
Q 009194 36 QKDPIAISLPHRDIQE-----LPE-RLQCPNLQLFLLYTEGN--GPMQVSDHF------FEGMEGLKVLQFPGIGSSS-- 99 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~--~~~~~~~~~------~~~l~~L~~L~l~~~~~~~-- 99 (540)
.+++++|++++|.+.. +.. +..+++|++|++++|.. ....+|..+ +.++++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4456666666665532 111 22556666666666532 011222222 2456666666666666543
Q ss_pred ---CCcccccCCCCcEEEcCCCccCC--ccc----ccCC---------CCCCEEEecCCCCc--ccc---hhcCCCCCCC
Q 009194 100 ---LPSSLGRLINLQTLCLDWCELAD--IAA----IGQL---------KKLEILSLAYSNIN--QLP---VEIGQLTRLQ 156 (540)
Q Consensus 100 ---l~~~l~~l~~L~~L~l~~~~~~~--~~~----i~~l---------~~L~~L~l~~~~~~--~lp---~~~~~l~~L~ 156 (540)
+|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 44455566666666666666542 222 2222 56666666666554 333 3345556666
Q ss_pred EEECCCCccccc-----cchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCC
Q 009194 157 LLDLSNCWWLEV-----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (540)
Q Consensus 157 ~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (540)
+|++++|. +.. +....+..+++|+.|++++|.+.... ....+..+..+++|+.|++++|.+
T Consensus 191 ~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 191 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCC
T ss_pred EEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----HHHHHHHHccCCCcCEEECCCCCC
Confidence 66666655 221 11112455666666666665542100 012234455556666666665554
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=6.3e-14 Score=138.07 Aligned_cols=172 Identities=19% Similarity=0.179 Sum_probs=127.3
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHh-cCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFE-GMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~ 117 (540)
+.++++++.+..+|... .+.++.|++++|.+ ..++...|. ++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57788888887777633 34588888888876 556555566 7888888888888888765 4678888888888888
Q ss_pred CccCC-c-ccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhh---hcCCccceEEccCCCcc
Q 009194 118 CELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVI---SKLSQLEELYMGNGFSG 191 (540)
Q Consensus 118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~ 191 (540)
|.++. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 88876 3 5678888888888888888866 4558888888888888887 677777644 56888888888888776
Q ss_pred cccccCCCccchhhccCCCC--ccEEEeecCCCC
Q 009194 192 WEKVEGGSNASLVELERLTE--LTTLEIEVPDAE 223 (540)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 223 (540)
... ...+..++. ++.|++.+|+..
T Consensus 177 ~l~--------~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLP--------LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCC--------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccC--------HHHhhhccHhhcceEEecCCCcc
Confidence 211 234555555 477888887754
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=8.3e-14 Score=121.23 Aligned_cols=138 Identities=22% Similarity=0.193 Sum_probs=79.8
Q ss_pred CccCcEEEcCCCCCC--CCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEEC
Q 009194 84 MEGLKVLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDL 160 (540)
Q Consensus 84 l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l 160 (540)
.++|++|++++|.+. .+|..+..+++|++|++++|.++....+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 355666666666665 5665556666666666666665555555666666666666666655 5555555666666666
Q ss_pred CCCccccccch-hhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194 161 SNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (540)
Q Consensus 161 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (540)
++|. +..++. ..++.+++|+.|++++|.+.... ......+..+++|+.|++..|....+|.
T Consensus 103 s~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN-----DYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST-----THHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH-----HHHHHHHHhCccCcEecCCCCChhhccc
Confidence 6665 444431 22566666666666666554110 0011245666667777776666555554
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=4.2e-14 Score=139.51 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=47.9
Q ss_pred CccEEEcccCCCCCccccH----HHHhcCc-cCcEEEcCCCCCCCC-CcccccC-----CCCcEEEcCCCccCC--ccc-
Q 009194 60 NLQLFLLYTEGNGPMQVSD----HFFEGME-GLKVLQFPGIGSSSL-PSSLGRL-----INLQTLCLDWCELAD--IAA- 125 (540)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-~~~l~~l-----~~L~~L~l~~~~~~~--~~~- 125 (540)
+|++|++++|.+ ..... +.+.+++ +|++|++++|.+... +..+..+ ++|++|++++|.++. +..
T Consensus 23 ~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 355566655554 22222 3344555 555555555555432 2233332 555555555555543 221
Q ss_pred ---ccCC-CCCCEEEecCCCCcccchh-----cCC-CCCCCEEECCCCc
Q 009194 126 ---IGQL-KKLEILSLAYSNINQLPVE-----IGQ-LTRLQLLDLSNCW 164 (540)
Q Consensus 126 ---i~~l-~~L~~L~l~~~~~~~lp~~-----~~~-l~~L~~L~l~~~~ 164 (540)
+..+ ++|++|++++|.++..+.. +.. .++|++|++++|.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 2233 5555555555555433221 222 2355555555554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=8.8e-14 Score=137.07 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=79.0
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccc-cCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEe
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLG-RLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~-~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l 137 (540)
++++++++.. ..+|..+ .+.+++|++++|.+..++. .+. ++++|++|++++|.++. + ..+.++++|++|++
T Consensus 21 ~~l~c~~~~l--~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQL--PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCC--SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCc--CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3455555543 4444322 2345566666666555433 233 55666666666666554 2 45556666666666
Q ss_pred cCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (540)
Q Consensus 138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (540)
++|.++.++.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+..... .....+..+++|+.|+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-----~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPV-----ELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCG-----GGTC----CTTCCEEE
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCH-----HHhcCcccCCcCCEEE
Confidence 66665555443 5556666666666655 444433335556666666666655541110 0111114455666666
Q ss_pred eecCCCCCCCc
Q 009194 217 IEVPDAEILPP 227 (540)
Q Consensus 217 l~~~~~~~~~~ 227 (540)
+++|.+..++.
T Consensus 170 L~~N~l~~l~~ 180 (361)
T 2xot_A 170 LSSNKLKKLPL 180 (361)
T ss_dssp CCSSCCCCCCH
T ss_pred CCCCCCCccCH
Confidence 66666555553
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=3.9e-14 Score=139.74 Aligned_cols=186 Identities=11% Similarity=0.138 Sum_probs=135.7
Q ss_pred hcCCCeEEEccCCCCCCCCC------cCCCC-CccEEEcccCCCCCccccHHHHhcC-----ccCcEEEcCCCCCCCCCc
Q 009194 35 IQKDPIAISLPHRDIQELPE------RLQCP-NLQLFLLYTEGNGPMQVSDHFFEGM-----EGLKVLQFPGIGSSSLPS 102 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~l~~ 102 (540)
..+++++|++++|.+...+. +..++ +|++|++++|.+ .......+..+ ++|++|++++|.+...+.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 45669999999999976652 23677 899999999987 33322223443 999999999999875443
Q ss_pred -c----cccC-CCCcEEEcCCCccCC--ccc----ccC-CCCCCEEEecCCCCc-----ccchhcCCCC-CCCEEECCCC
Q 009194 103 -S----LGRL-INLQTLCLDWCELAD--IAA----IGQ-LKKLEILSLAYSNIN-----QLPVEIGQLT-RLQLLDLSNC 163 (540)
Q Consensus 103 -~----l~~l-~~L~~L~l~~~~~~~--~~~----i~~-l~~L~~L~l~~~~~~-----~lp~~~~~l~-~L~~L~l~~~ 163 (540)
. +..+ ++|++|++++|.++. +.. +.. ..+|++|++++|.+. .++..+..++ +|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 2 4455 899999999999876 333 344 369999999999887 5566666776 9999999999
Q ss_pred ccccccchhh----hhcC-CccceEEccCCCcccccccCCCccchhhccC-CCCccEEEeecCCCCCCCc
Q 009194 164 WWLEVIAPNV----ISKL-SQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPDAEILPP 227 (540)
Q Consensus 164 ~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~ 227 (540)
. +...+... +..+ ++|++|++++|.+... ........+.. .++|++|++++|.+...+.
T Consensus 178 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 178 N-LASKNCAELAKFLASIPASVTSLDLSANLLGLK----SYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----CHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred C-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChh----HHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 8 54444322 3445 5999999999987621 11224455555 4599999999999776554
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.4e-13 Score=125.45 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=108.9
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEec
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 138 (540)
+.++.+++.. ..+|..+ .+++++|++++|.+..++. .+..+++|++|++++|.++. +..+.++++|++|+++
T Consensus 14 ~~v~c~~~~l--~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGL--TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCC--SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCc--CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 4677777764 5566533 3678888888888877654 67788888888888888776 5778888888888888
Q ss_pred CCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEe
Q 009194 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI 217 (540)
Q Consensus 139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 217 (540)
+|.++.+|.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+.... ...+..+++|+.|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA--------KGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC--------TTTTTTCTTCCEEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEEC--------HHHHhCCCCCCEEEe
Confidence 8888887766 5778888888888887 56665555778888888888888765211 234667778888888
Q ss_pred ecCCC
Q 009194 218 EVPDA 222 (540)
Q Consensus 218 ~~~~~ 222 (540)
.+|..
T Consensus 160 ~~N~~ 164 (220)
T 2v9t_B 160 AQNPF 164 (220)
T ss_dssp CSSCE
T ss_pred CCCCc
Confidence 87764
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=9.5e-14 Score=125.50 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=128.6
Q ss_pred hhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-c
Q 009194 27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-S 103 (540)
Q Consensus 27 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~ 103 (540)
.+.+|. .+.+++++++++++.+..++. +..+++|++|++++|.+ ..++...|.++++|++|++++|.+..+|. .
T Consensus 19 l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 19 RTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 334443 356789999999999987776 33899999999999987 56777777899999999999999998775 4
Q ss_pred cccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCcc
Q 009194 104 LGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180 (540)
Q Consensus 104 l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 180 (540)
+..+++|++|++++|.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++|
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l 167 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGI 167 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTT
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCH
Confidence 6899999999999999987 4 5689999999999999999988776 78899999999999862 2456678
Q ss_pred ceEEccCCCcc
Q 009194 181 EELYMGNGFSG 191 (540)
Q Consensus 181 ~~L~l~~~~~~ 191 (540)
+.|+++.+.+.
T Consensus 168 ~~L~~~~n~~~ 178 (208)
T 2o6s_A 168 RYLSEWINKHS 178 (208)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 88887776655
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=3.3e-14 Score=141.61 Aligned_cols=183 Identities=18% Similarity=0.211 Sum_probs=140.1
Q ss_pred cCCCeEEEccCCCCCCC----CC--------cCCCCCccEEEcccCCCCCcc---ccHHHHhcCccCcEEEcCCCCCCC-
Q 009194 36 QKDPIAISLPHRDIQEL----PE--------RLQCPNLQLFLLYTEGNGPMQ---VSDHFFEGMEGLKVLQFPGIGSSS- 99 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l----~~--------~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~- 99 (540)
.+++++|+++++.+..+ |. +..+++|++|++++|.+ ... .....+.++++|++|++++|.+..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC-CTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC-CHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 67899999999766433 22 13789999999999997 331 223345899999999999999853
Q ss_pred ----CCcccccC---------CCCcEEEcCCCccCC---c---ccccCCCCCCEEEecCCCCc------ccchhcCCCCC
Q 009194 100 ----LPSSLGRL---------INLQTLCLDWCELAD---I---AAIGQLKKLEILSLAYSNIN------QLPVEIGQLTR 154 (540)
Q Consensus 100 ----l~~~l~~l---------~~L~~L~l~~~~~~~---~---~~i~~l~~L~~L~l~~~~~~------~lp~~~~~l~~ 154 (540)
++..+..+ ++|++|++++|.+.. + ..+..+++|++|++++|.+. ..|..+..+++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 34444455 899999999999873 3 46778999999999999887 34447889999
Q ss_pred CCEEECCCCccc----cccchhhhhcCCccceEEccCCCcccccccCCCccchhhc--cCCCCccEEEeecCCCCC
Q 009194 155 LQLLDLSNCWWL----EVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL--ERLTELTTLEIEVPDAEI 224 (540)
Q Consensus 155 L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~ 224 (540)
|++|++++|... ..++.. +..+++|++|++++|.+..... ...+..+ +++++|+.|++++|.+..
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLSARGA----AAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHHHH----HHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred ccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCCCchhhH----HHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 999999999842 556664 7899999999999998762111 1233455 448999999999998765
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=5.5e-13 Score=121.41 Aligned_cols=148 Identities=13% Similarity=0.112 Sum_probs=115.8
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC--cccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEe
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l 137 (540)
++++++++.. ..+|..+ ...+++|++++|.+..++ ..+..+++|++|++++|.++. + ..+.++++|++|++
T Consensus 14 ~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 5788888876 5666533 456789999999988763 347889999999999999887 3 57889999999999
Q ss_pred cCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (540)
Q Consensus 138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (540)
++|.++.++.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+... .+..+..+++|+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV--------APGAFDTLHSLSTLN 159 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCB--------CTTTTTTCTTCCEEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEE--------CHHHhcCCCCCCEEE
Confidence 99988877665 8889999999999988 5566544478889999999998877621 235677888899999
Q ss_pred eecCCCC
Q 009194 217 IEVPDAE 223 (540)
Q Consensus 217 l~~~~~~ 223 (540)
+++|...
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 9888743
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=7.4e-13 Score=136.96 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=136.3
Q ss_pred hhhhhhhhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccC
Q 009194 28 EKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107 (540)
Q Consensus 28 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l 107 (540)
..+|. .+.++++.|++++|.+..+| ..+++|++|++++|.+ ..++. +.+ +|++|++++|.++.+|. .+
T Consensus 72 ~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l--~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l 139 (571)
T 3cvr_A 72 SSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRL--STLPE--LPA--SLKHLDVDNNQLTMLPE---LP 139 (571)
T ss_dssp SCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC--SCCCC--CCT--TCCEEECCSSCCSCCCC---CC
T ss_pred CccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCC--CCcch--hhc--CCCEEECCCCcCCCCCC---cC
Confidence 33444 24578999999999999888 4689999999999987 44665 333 99999999999999887 78
Q ss_pred CCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCcc------
Q 009194 108 INLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL------ 180 (540)
Q Consensus 108 ~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L------ 180 (540)
++|++|++++|.++. |. .+++|++|++++|.++.+|. +. ++|++|++++|. +..+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~ 208 (571)
T 3cvr_A 140 ALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEET 208 (571)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------C
T ss_pred ccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhccccc
Confidence 999999999999988 44 67899999999999999998 66 999999999998 668876 333 66
Q ss_pred -ceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194 181 -EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE 223 (540)
Q Consensus 181 -~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (540)
+.|++++|.+. ..+..+..+++|+.|++++|.+.
T Consensus 209 L~~L~Ls~N~l~---------~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 209 EIFFRCRENRIT---------HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CEEEECCSSCCC---------CCCGGGGGSCTTEEEECCSSSCC
T ss_pred ceEEecCCCcce---------ecCHHHhcCCCCCEEEeeCCcCC
Confidence 99999999887 34556777999999999999965
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.2e-13 Score=118.54 Aligned_cols=107 Identities=24% Similarity=0.256 Sum_probs=51.8
Q ss_pred hcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccc--hhcCCCCCCCE
Q 009194 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQL 157 (540)
Q Consensus 82 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~ 157 (540)
..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +..+.++++|++|++++|.++.+| ..+..+++|++
T Consensus 46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 3444555555555544444 334445555555555555443 233334555555555555555443 34555555555
Q ss_pred EECCCCccccccch---hhhhcCCccceEEccCCCc
Q 009194 158 LDLSNCWWLEVIAP---NVISKLSQLEELYMGNGFS 190 (540)
Q Consensus 158 L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~ 190 (540)
|++++|. +..++. ..+..+++|+.|++++|..
T Consensus 125 L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 125 LDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555554 333333 2245555555555555443
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=1.6e-12 Score=119.24 Aligned_cols=147 Identities=20% Similarity=0.221 Sum_probs=99.0
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEec
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA 138 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~ 138 (540)
+.++.+++.. ..+|..+ .++|++|++++|.+..+ |..+..+++|++|++++|.++. + ..+..+++|++|+++
T Consensus 22 ~~v~c~~~~l--~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDCRSKRH--ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeEccCCCc--CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4566666654 5555432 46777777777777765 5566777777777777777766 3 456777777777777
Q ss_pred CCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEe
Q 009194 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI 217 (540)
Q Consensus 139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 217 (540)
+|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++++|.+... ....+..+++|+.|++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSI--------PHGAFDRLSSLTHAYL 166 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEEC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCcc--------CHHHHhCCCCCCEEEe
Confidence 7777766655 5677777777777776 5567665 57777777777777766511 1134566677777777
Q ss_pred ecCCCC
Q 009194 218 EVPDAE 223 (540)
Q Consensus 218 ~~~~~~ 223 (540)
.+|...
T Consensus 167 ~~N~~~ 172 (229)
T 3e6j_A 167 FGNPWD 172 (229)
T ss_dssp TTSCBC
T ss_pred eCCCcc
Confidence 776643
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=4.3e-13 Score=114.11 Aligned_cols=106 Identities=24% Similarity=0.216 Sum_probs=56.1
Q ss_pred ccCcEEEcCCCCCC--CCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEECC
Q 009194 85 EGLKVLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLS 161 (540)
Q Consensus 85 ~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~ 161 (540)
++|++|++++|.+. .+|..+..+++|++|++++|.++....++++++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 45555555555554 4555555555555555555555444445555555555555555554 44444455555555555
Q ss_pred CCccccccc-hhhhhcCCccceEEccCCCcc
Q 009194 162 NCWWLEVIA-PNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 162 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 191 (540)
+|. +..++ ...++.+++|++|++++|.+.
T Consensus 97 ~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 97 GNK-IKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 555 33332 112455555555555555443
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=4.1e-13 Score=143.98 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=98.9
Q ss_pred hcCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCC--CccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCc
Q 009194 35 IQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNG--PMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ 111 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~ 111 (540)
..+.++++++..+.+...+... ....|+.+.+.+.... ....+.+.|..++.|++|++++|.+..+|..+.++++|+
T Consensus 171 s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 171 STPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred cCCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 3456889999888876654432 4444444443332210 112445567889999999999999999998888999999
Q ss_pred EEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCc
Q 009194 112 TLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (540)
Q Consensus 112 ~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (540)
+|++++|.++. |..++++++|++|++++|.++.+|..++.+++|++|++++|. +..+|.. ++.+++|+.|++++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCcc
Confidence 99999999888 788999999999999999999999999999999999999987 6788887 89999999999999987
Q ss_pred c
Q 009194 191 G 191 (540)
Q Consensus 191 ~ 191 (540)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 6
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.8e-15 Score=157.24 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=74.0
Q ss_pred CCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCC
Q 009194 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (540)
Q Consensus 109 ~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 188 (540)
.|++|++++|.++.++.++++++|++|++++|.++.+|..++.+++|++|++++|. +..+| . ++.+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-VANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-cCCCCCCcEEECCCC
Confidence 46777777777766223777777777777777777777777777777777777776 55566 3 677777777777777
Q ss_pred CcccccccCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194 189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (540)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (540)
.+.... .+..++.+++|+.|++++|.+...+.
T Consensus 519 ~l~~~~-------~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 519 RLQQSA-------AIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCCSSS-------TTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCC-------CcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 665110 04556677777777777777655544
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=4.3e-13 Score=114.13 Aligned_cols=120 Identities=20% Similarity=0.207 Sum_probs=58.6
Q ss_pred CCCeEEEccCCCCC--CCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-CCcccccCCCCcE
Q 009194 37 KDPIAISLPHRDIQ--ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQT 112 (540)
Q Consensus 37 ~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~L~~ 112 (540)
++++++++++|.+. .++... .+++|+.|++++|.+ ..+ ..+.++++|++|++++|.+.. +|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 45666666666654 444432 555555555555544 222 223445555555555555544 4444444555555
Q ss_pred EEcCCCccCC-c--ccccCCCCCCEEEecCCCCcccch----hcCCCCCCCEEEC
Q 009194 113 LCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLDL 160 (540)
Q Consensus 113 L~l~~~~~~~-~--~~i~~l~~L~~L~l~~~~~~~lp~----~~~~l~~L~~L~l 160 (540)
|++++|.++. + ..++.+++|++|++++|.++.+|. .+..+++|++|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555555444 2 444445555555555544444433 2444444444443
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=6.9e-13 Score=116.28 Aligned_cols=132 Identities=15% Similarity=0.066 Sum_probs=79.6
Q ss_pred CcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-c-ccccCCCC
Q 009194 54 ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKK 131 (540)
Q Consensus 54 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~ 131 (540)
....+.+|+.|++++|.+ ..++. +....++|++|++++|.+..+ ..+..+++|++|++++|.++. + ..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 344566677777777765 23332 222233677777777766655 446666677777777776665 3 33366667
Q ss_pred CCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchh---hhhcCCccceEEccCCCc
Q 009194 132 LEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPN---VISKLSQLEELYMGNGFS 190 (540)
Q Consensus 132 L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~ 190 (540)
|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. +++.+++|+.|+++.+..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777776666665 56666667777776666 4444443 355666666666665543
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.5e-12 Score=114.21 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=67.8
Q ss_pred cCCCeEEEccCCCCCCCCCcCCCC-CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCccc-ccCCCCcEE
Q 009194 36 QKDPIAISLPHRDIQELPERLQCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTL 113 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l-~~l~~L~~L 113 (540)
..+++++++++|.+..++....+. +|+.|++++|.+ ..+ ..+.++++|++|++++|.+..+|..+ ..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Ccc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 344566666666555554444333 566666666554 222 12355556666666666655554333 555666666
Q ss_pred EcCCCccCC-cc--cccCCCCCCEEEecCCCCcccchh----cCCCCCCCEEECCCCc
Q 009194 114 CLDWCELAD-IA--AIGQLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNCW 164 (540)
Q Consensus 114 ~l~~~~~~~-~~--~i~~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~l~~~~ 164 (540)
++++|.++. +. .+..+++|++|++++|.+..+|.. +..+++|++|+++++.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666665554 32 455566666666666655555543 5555666666655554
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=9.2e-12 Score=110.68 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=69.0
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC 118 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~ 118 (540)
+.++++++.+..+|... .+++++|++++|.+ ..++. .|.++++|++|++++|.++.++ ..+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35666666666665432 24566666666654 34442 3456666666666666665543 34556666666666666
Q ss_pred ccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCc
Q 009194 119 ELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (540)
Q Consensus 119 ~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 164 (540)
.++. +..+.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 6554 24555666666666666666555543 5556666666665554
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=4.9e-12 Score=112.46 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=75.3
Q ss_pred eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccH-HHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (540)
Q Consensus 40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~ 117 (540)
+.++++++.+..+|... ..++++|++++|.+ ..++. .+|.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777666666533 22666777777665 33332 2346666677777766666654 45566666666666666
Q ss_pred CccCC--cccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCcc
Q 009194 118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWW 165 (540)
Q Consensus 118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~ 165 (540)
|.++. +..+.++++|++|++++|.++.+ |..+..+++|++|++++|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 66665 24466666666666666666643 44466666666666666653
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=8.9e-12 Score=110.78 Aligned_cols=124 Identities=18% Similarity=0.196 Sum_probs=106.6
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc--cccCCCCcEEEcCCCccCC--cccccCCCCCCEEEe
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS--LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSL 137 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~--l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l 137 (540)
++++++++.+ ..+|..+ ..++++|++++|.+..++.. ++.+++|++|++++|.++. +..+.++++|++|++
T Consensus 11 ~~l~~s~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCc--CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 7899999886 6777644 34899999999999987753 8999999999999999987 588999999999999
Q ss_pred cCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (540)
++|.++.++.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999977665 8899999999999998 55554444899999999999999876
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=1.2e-12 Score=140.44 Aligned_cols=131 Identities=21% Similarity=0.221 Sum_probs=111.2
Q ss_pred CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEE
Q 009194 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL 135 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L 135 (540)
.+++|+.|++++|.+ ..++..++ ++++|++|++++|.+..+|..++++++|++|++++|.++. |..++++++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 789999999999997 57777765 8999999999999999999999999999999999999988 8899999999999
Q ss_pred EecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCC-ccceEEccCCCcc
Q 009194 136 SLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSG 191 (540)
Q Consensus 136 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 191 (540)
++++|.+..+|..++.+++|++|++++|.....+|.. +..+. .+..+++.+|.+.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCccc
Confidence 9999999999999999999999999999844444443 44432 2223556666554
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=2e-11 Score=108.43 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=85.6
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecC
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAY 139 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~ 139 (540)
++++++++.+ ..+|..+ .++|++|++++|.++.+|..+.++++|++|++++|.++. +..+.++++|++|++++
T Consensus 13 ~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGL--KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCC--CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4566776664 5555433 356777777777777777777777777777777777766 35677777777777777
Q ss_pred CCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194 140 SNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 140 ~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (540)
|.++.++. .+..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 77776654 36777777777777776 55666655666777777777766543
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=3.4e-11 Score=105.52 Aligned_cols=124 Identities=20% Similarity=0.272 Sum_probs=83.6
Q ss_pred CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCC
Q 009194 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW 117 (540)
Q Consensus 39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~ 117 (540)
.+.++++++.+..+|.. ..++|++|++++|.+ ..++...|.++++|++|++++|.+..+|. .+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35677777777666643 235777777777775 45555555677777777777777776654 346777777777777
Q ss_pred CccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCcc
Q 009194 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWW 165 (540)
Q Consensus 118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 165 (540)
|.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 77766 3 4466777777777777777766665 36677777777777663
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=4.9e-13 Score=119.72 Aligned_cols=108 Identities=22% Similarity=0.261 Sum_probs=65.5
Q ss_pred HhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEE
Q 009194 81 FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159 (540)
Q Consensus 81 ~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 159 (540)
+.++++|++|++++|.+..+| .+..+++|++|++++|.++. |..+..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 456666666666666666665 56666666666666666655 455555566666666666666655 456666666666
Q ss_pred CCCCccccccch-hhhhcCCccceEEccCCCcc
Q 009194 160 LSNCWWLEVIAP-NVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 160 l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 191 (540)
+++|. +..++. ..+..+++|+.|++++|.+.
T Consensus 122 l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 122 MSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 66655 444332 22566666666666666543
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=4.3e-11 Score=124.34 Aligned_cols=123 Identities=21% Similarity=0.201 Sum_probs=104.9
Q ss_pred cCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCc
Q 009194 86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164 (540)
Q Consensus 86 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 164 (540)
.|++|++++|.++.+|. ++.+++|++|++++|.++. |..++++++|++|++++|.++.+| .++.+++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58899999999999997 9999999999999999998 899999999999999999999998 89999999999999998
Q ss_pred ccccc--chhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEe
Q 009194 165 WLEVI--APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI 217 (540)
Q Consensus 165 ~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 217 (540)
+..+ |.. ++.+++|+.|++++|.+..... .....+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG-----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS-----CTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc-----HHHHHHHHCcccCccCC
Confidence 6666 555 8999999999999998762211 11122345788888864
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=1.2e-10 Score=102.00 Aligned_cols=124 Identities=21% Similarity=0.291 Sum_probs=76.6
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEec
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA 138 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~ 138 (540)
+.+.++++.. ..++.. ..++|++|++++|.+..++. .++.+++|++|++++|.++. + ..+..+++|++|+++
T Consensus 10 ~~l~~~~~~l--~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGL--TSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCC--SSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCC--ccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4566666654 444432 23566777777776666554 34666777777777776665 3 445667777777777
Q ss_pred CCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (540)
+|.++.+|.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 7766665554 4666677777776665 45565554556666666666666554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=1.4e-12 Score=116.65 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=113.7
Q ss_pred CeEEEccCC--CCCCCCC-cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194 39 PIAISLPHR--DIQELPE-RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (540)
Q Consensus 39 l~~l~l~~~--~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 115 (540)
++...+.+. .++.++. +..+++|++|++++|.+ ..++ .+.++++|++|++++|.+..+|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l--~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE--SCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC--cccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 455555543 3344544 33889999999999986 4466 358999999999999999999988888899999999
Q ss_pred CCCccCCcccccCCCCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccc---------hhhhhcCCccceEE
Q 009194 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIA---------PNVISKLSQLEELY 184 (540)
Q Consensus 116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~---------~~~l~~l~~L~~L~ 184 (540)
++|.++.++.+.++++|++|++++|.++.++. .+..+++|++|++++|......| ...+..+++|+.|+
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999985478899999999999999997765 68999999999999997433322 23367788888886
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=3.3e-10 Score=98.67 Aligned_cols=100 Identities=22% Similarity=0.357 Sum_probs=50.8
Q ss_pred cEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCc
Q 009194 88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (540)
Q Consensus 88 ~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 164 (540)
+.++++++.+..+|..+. ++|++|++++|.++. +..+.++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345555555555554332 455555555555544 24455555555555555555555444 3455555555555554
Q ss_pred cccccchhhhhcCCccceEEccCCCc
Q 009194 165 WLEVIAPNVISKLSQLEELYMGNGFS 190 (540)
Q Consensus 165 ~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (540)
+..++...++.+++|+.|++++|.+
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred -cceeCHHHhccccCCCEEEeCCCCc
Confidence 4444443344555555555555443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=3.7e-10 Score=98.05 Aligned_cols=101 Identities=22% Similarity=0.301 Sum_probs=56.6
Q ss_pred CcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCC
Q 009194 87 LKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNC 163 (540)
Q Consensus 87 L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 163 (540)
.++++++++.+..+|..+ .++|++|++++|.++. +..+.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 345556665555555543 2556666666666554 34555666666666666666555544 355666666666665
Q ss_pred ccccccchhhhhcCCccceEEccCCCc
Q 009194 164 WWLEVIAPNVISKLSQLEELYMGNGFS 190 (540)
Q Consensus 164 ~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (540)
. +..++...++.+++|+.|++++|.+
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 5 4455544455555556665555544
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=2.2e-10 Score=111.12 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=105.7
Q ss_pred cCCCeEEEccCCCCC--------------------CCCCcC--C--------CCCccEEEcccCCCCCccccHHHHhcCc
Q 009194 36 QKDPIAISLPHRDIQ--------------------ELPERL--Q--------CPNLQLFLLYTEGNGPMQVSDHFFEGME 85 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 85 (540)
.++++.|++++|.+. .++... + |++|+.+.+.+ . ...+....|.+|+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~--i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K--IKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T--CCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c--ccchhHHHhhcCc
Confidence 678999999988876 233322 5 77888888877 3 3566667777888
Q ss_pred cCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCcc----CC--ccccc-------------------------------
Q 009194 86 GLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCEL----AD--IAAIG------------------------------- 127 (540)
Q Consensus 86 ~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~----~~--~~~i~------------------------------- 127 (540)
+|+.+++.++.+..++ ..+..+.++.++....... .. ...+.
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 8888888877765543 3455666666665544110 00 00010
Q ss_pred -------------------CCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccc-eEEcc
Q 009194 128 -------------------QLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE-ELYMG 186 (540)
Q Consensus 128 -------------------~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~ 186 (540)
.+++|+.+++++|.++.+|.. +.++++|+.+++.++ +..++..++..+.+|+ .+.+.
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEEC
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEc
Confidence 155666666666666666554 566666666666654 4556665566666666 66665
Q ss_pred CCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCcc
Q 009194 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (540)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (540)
. .+.. -....|.++++|+.+++..+.+..++..
T Consensus 283 ~-~l~~--------I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 283 A-SVTA--------IEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp T-TCCE--------ECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred c-cceE--------EchhhhhCCccCCEEEeCCCccCccchh
Confidence 5 2221 1123456666666666666665555544
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.8e-09 Score=93.94 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=65.3
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEec
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA 138 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~ 138 (540)
+.++++++.. ..+|..+ .++|++|++++|.+..+ |..+.++++|++|++++|.++. + ..+.++++|++|+++
T Consensus 15 ~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 4555555554 4444432 26667777777777665 4456777777777777777766 4 345677777777777
Q ss_pred CCCCcccchh-cCCCCCCCEEECCCCc
Q 009194 139 YSNINQLPVE-IGQLTRLQLLDLSNCW 164 (540)
Q Consensus 139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~ 164 (540)
+|.++.+|.. +..+++|++|++++|.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCC
Confidence 7777777665 6777777777777776
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=1.9e-09 Score=104.54 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=65.8
Q ss_pred CCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCC-eEEEeeCCCCccccCh
Q 009194 309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLR-IINVDSCRKLKYLFSF 387 (540)
Q Consensus 309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~ 387 (540)
.+++|+.+++.++ +++.++.. ....+++|+.+.+.+ +++.++... +..+++|+ .+.+.+ +++.++.
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~----aF~~~~~L~~l~l~~--ni~~I~~~a---F~~~~~L~~~l~l~~--~l~~I~~- 290 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDF----TFAQKKYLLKIKLPH--NLKTIGQRV---FSNCGRLAGTLELPA--SVTAIEF- 290 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTT----TTTTCTTCCEEECCT--TCCEECTTT---TTTCTTCCEEEEECT--TCCEECT-
T ss_pred hcCCCeEEECCCC-CcceecHh----hhhCCCCCCEEECCc--ccceehHHH---hhCChhccEEEEEcc--cceEEch-
Confidence 3678888888876 46666443 556778888888876 377766554 66788888 888876 6777744
Q ss_pred HHHhhcccccEEEEccccccccccccC
Q 009194 388 SMAKNLLRLQKVKVEDCDDLKMIIGPD 414 (540)
Q Consensus 388 ~~~~~l~~L~~L~l~~c~~l~~~~~~~ 414 (540)
..+.++++|+.+++.+ ++++.++...
T Consensus 291 ~aF~~c~~L~~l~l~~-n~i~~I~~~a 316 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATG-DKITTLGDEL 316 (329)
T ss_dssp TTTTTCTTEEEEEECS-SCCCEECTTT
T ss_pred hhhhCCccCCEEEeCC-CccCccchhh
Confidence 4467888899998876 5676665333
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=2.9e-09 Score=92.30 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=63.9
Q ss_pred cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEec
Q 009194 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA 138 (540)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~ 138 (540)
+.++++++.. ..+|..+ .++|++|++++|.+..+ |..+..+++|++|++++|.++. + ..+.++++|++|+++
T Consensus 12 ~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4455555553 3444322 35666677777776665 4456677777777777777666 3 445677777777777
Q ss_pred CCCCcccchh-cCCCCCCCEEECCCCc
Q 009194 139 YSNINQLPVE-IGQLTRLQLLDLSNCW 164 (540)
Q Consensus 139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~ 164 (540)
+|.++.+|.. +..+++|++|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 7777766654 6777777777777776
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=4.2e-10 Score=110.60 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=84.5
Q ss_pred CCccEEEcccCCCCCccccHHH---Hh-cCccCcEEEcCCCCCCC--CCcccccCCCCcEEEcCCCccCC--cccc----
Q 009194 59 PNLQLFLLYTEGNGPMQVSDHF---FE-GMEGLKVLQFPGIGSSS--LPSSLGRLINLQTLCLDWCELAD--IAAI---- 126 (540)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~---~~-~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~--~~~i---- 126 (540)
+.|++|++++|.+ .......+ +. ..++|++|++++|.+.. +......+++|++|++++|.+++ ...+
T Consensus 72 ~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4566666666665 22111111 11 12566677777666642 11112334566777777776654 2322
Q ss_pred -cCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCccccccc----hhhhhcCCccceEEccCCCccccccc
Q 009194 127 -GQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIA----PNVISKLSQLEELYMGNGFSGWEKVE 196 (540)
Q Consensus 127 -~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (540)
...++|++|++++|.++ .++..+..+++|++|++++|. ++... ...+...++|+.|++++|.+.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-
Confidence 23566777777777665 244445666677777777766 33221 1124556677777777776541111
Q ss_pred CCCccchhhccCCCCccEEEeecCCCC
Q 009194 197 GGSNASLVELERLTELTTLEIEVPDAE 223 (540)
Q Consensus 197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (540)
......+...++|++|++++|.++
T Consensus 229 ---~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 ---LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ---HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ---HHHHHHHHhCCCCCEEeccCCCCC
Confidence 122334455667777777777654
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=6.3e-10 Score=109.37 Aligned_cols=156 Identities=14% Similarity=0.031 Sum_probs=117.6
Q ss_pred hhcCCCeEEEccCCCCCCC-----CCcC--CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-----CC
Q 009194 34 TIQKDPIAISLPHRDIQEL-----PERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-----LP 101 (540)
Q Consensus 34 ~~~~~l~~l~l~~~~~~~l-----~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----l~ 101 (540)
.+.+.++.+++++|.+... .... ..++|++|++++|.+ .......++..+++|++|++++|.++. +.
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 4567899999999998432 2211 347999999999987 444444455567899999999999864 22
Q ss_pred ccc-ccCCCCcEEEcCCCccCC--c----ccccCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCcccccc
Q 009194 102 SSL-GRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVI 169 (540)
Q Consensus 102 ~~l-~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~ 169 (540)
..+ ...++|++|++++|.+++ . ..+..+++|++|++++|.+. .++..+...++|++|++++|. ++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH
Confidence 223 356889999999999864 2 45578999999999999887 345667888999999999998 4432
Q ss_pred chh----hhhcCCccceEEccCCCcc
Q 009194 170 APN----VISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 170 ~~~----~l~~l~~L~~L~l~~~~~~ 191 (540)
... .+...++|++|++++|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 221 1456789999999999876
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=3.7e-07 Score=90.51 Aligned_cols=264 Identities=14% Similarity=0.127 Sum_probs=142.8
Q ss_pred CCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC--cccccCCCCCCE
Q 009194 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI 134 (540)
Q Consensus 58 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~ 134 (540)
+..++.+.+... ...+....|.++ +|+.+.+..+ +..++. ++.++ +|+.+.+.. .++. ...+.++.+|+.
T Consensus 112 ~~~l~~i~ip~~---i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS---VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT---CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc---cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 455666666554 245555556664 5777777655 444432 34443 577777765 4443 366777777888
Q ss_pred EEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccE
Q 009194 135 LSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTT 214 (540)
Q Consensus 135 L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 214 (540)
+++..+.++.+|...-...+|+.+.+..+ +..++..++..+++|+.+.+..+... -....+.+ .+|+.
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~---------I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVST---------IGQEAFRE-SGITT 252 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCE---------ECTTTTTT-CCCSE
T ss_pred eecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccC---------cccccccc-CCccE
Confidence 88777777777766444677777777643 56666666777777777776653211 01122333 45666
Q ss_pred EEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccc
Q 009194 215 LEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETL 294 (540)
Q Consensus 215 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (540)
+.+. +....++... ...+++|+.+.+.+ .... .
T Consensus 253 i~lp-~~i~~I~~~a-----------------------F~~c~~L~~l~l~~----~~~~-------------------~ 285 (401)
T 4fdw_A 253 VKLP-NGVTNIASRA-----------------------FYYCPELAEVTTYG----STFN-------------------D 285 (401)
T ss_dssp EEEE-TTCCEECTTT-----------------------TTTCTTCCEEEEES----SCCC-------------------C
T ss_pred EEeC-CCccEEChhH-----------------------hhCCCCCCEEEeCC----cccc-------------------C
Confidence 6552 2222222211 22445555555543 1100 0
Q ss_pred cCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEE
Q 009194 295 EGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIIN 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~ 374 (540)
.....+ ... .+.++++|+.+.+.+ +++.+... ....+++|+.+.|.+ +++.+.... +..+ +|+.+.
T Consensus 286 ~~~~~I-~~~-aF~~c~~L~~l~l~~--~i~~I~~~----aF~~c~~L~~l~lp~--~l~~I~~~a---F~~~-~L~~l~ 351 (401)
T 4fdw_A 286 DPEAMI-HPY-CLEGCPKLARFEIPE--SIRILGQG----LLGGNRKVTQLTIPA--NVTQINFSA---FNNT-GIKEVK 351 (401)
T ss_dssp CTTCEE-CTT-TTTTCTTCCEECCCT--TCCEECTT----TTTTCCSCCEEEECT--TCCEECTTS---SSSS-CCCEEE
T ss_pred CcccEE-CHH-HhhCCccCCeEEeCC--ceEEEhhh----hhcCCCCccEEEECc--cccEEcHHh---CCCC-CCCEEE
Confidence 000001 001 155677777777763 45655332 445567777777743 466655444 4456 788888
Q ss_pred EeeCCCCccccChHHHhhc-ccccEEEEcc
Q 009194 375 VDSCRKLKYLFSFSMAKNL-LRLQKVKVED 403 (540)
Q Consensus 375 l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~ 403 (540)
+.+. .+..++.. ....+ .+++.|.+-.
T Consensus 352 l~~n-~~~~l~~~-~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 352 VEGT-TPPQVFEK-VWYGFPDDITVIRVPA 379 (401)
T ss_dssp ECCS-SCCBCCCS-SCCCSCTTCCEEEECG
T ss_pred EcCC-CCcccccc-cccCCCCCccEEEeCH
Confidence 8764 44444332 22334 3567776654
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.82 E-value=2e-09 Score=92.03 Aligned_cols=66 Identities=8% Similarity=0.145 Sum_probs=35.6
Q ss_pred ccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHh---hcccccEEEEccccccccc
Q 009194 341 LLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK---NLLRLQKVKVEDCDDLKMI 410 (540)
Q Consensus 341 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~l~~c~~l~~~ 410 (540)
.|+.|++++|. +++..... ...+++|++|.+++|..+++........ ..++|++|++++|+++++.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~---L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH---MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG---GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCC-ccHHHHHH---hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 45666666654 44443332 3456666666666666666542222111 1245666666666666654
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.78 E-value=3.3e-09 Score=90.76 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=70.2
Q ss_pred ccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhh---hcCCC
Q 009194 394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVN---SLGQL 470 (540)
Q Consensus 394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~---~l~~L 470 (540)
..|++|++++|. +++.+. ..+..+++|++|++++|..+++.+...+.+ .+++|
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-----------------------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L 116 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-----------------------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-----------------------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC
T ss_pred ceEeEEeCcCCC-ccHHHH-----------------------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC
Confidence 379999999997 776531 123457999999999999999975544433 24689
Q ss_pred cEEEEecccccceeccccccCCCCccccccccceeecccCCCCCCC
Q 009194 471 QHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSF 516 (540)
Q Consensus 471 ~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~L~~~ 516 (540)
++|++++|+++++.. +.. +..+++|++|.+++||.++..
T Consensus 117 ~~L~Ls~C~~ITD~G----l~~---L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 117 LEMEIISCGNVTDKG----IIA---LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CEEEEESCTTCCHHH----HHH---GGGCTTCCEEEEESCTTCCCH
T ss_pred CEEEcCCCCcCCHHH----HHH---HhcCCCCCEEECCCCCCCCch
Confidence 999999999998843 222 346899999999999998853
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=3.8e-08 Score=96.10 Aligned_cols=97 Identities=22% Similarity=0.128 Sum_probs=55.8
Q ss_pred EEcccC-CCCCccccHHHHhcCccCcEEEcCC-CCCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEec
Q 009194 64 FLLYTE-GNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (540)
Q Consensus 64 L~l~~~-~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 138 (540)
++.+++ .. ..+|. +..+.+|++|++++ |.+..+| ..++.+++|++|+|++|.++. +..|.++++|++|+++
T Consensus 13 v~~~~~n~l--~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGAL--DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCC--TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCC--CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 445544 32 44554 45666666666664 6666554 345666666666666666655 2455666666666666
Q ss_pred CCCCcccchhcCCCCCCCEEECCCCc
Q 009194 139 YSNINQLPVEIGQLTRLQLLDLSNCW 164 (540)
Q Consensus 139 ~~~~~~lp~~~~~l~~L~~L~l~~~~ 164 (540)
+|.++.+|..+.....|++|++.+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 66666665543332236666666655
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=6.4e-07 Score=88.94 Aligned_cols=309 Identities=12% Similarity=0.095 Sum_probs=161.3
Q ss_pred CCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC--cc
Q 009194 50 QELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IA 124 (540)
Q Consensus 50 ~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~ 124 (540)
..+.. +.+|.+|+++.+..+ ...+....|.+|.+|+.+++..+ +..++ ..+.++.+|+.+.+..+- .. ..
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~---i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~ 134 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST---VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVE 134 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC---ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecce
Confidence 34444 348899999999754 36677777899999999999754 44443 356778888877665432 22 24
Q ss_pred cccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccch
Q 009194 125 AIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASL 203 (540)
Q Consensus 125 ~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 203 (540)
.+.++..+...... ....+. ..+..+++|+.+.+..+ ...++...+..+.+|+.+.+..+... -..
T Consensus 135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~---------I~~ 201 (394)
T 4fs7_A 135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKI---------IRD 201 (394)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCE---------ECT
T ss_pred eeecccccccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceE---------eCc
Confidence 45555433332222 122222 34677888888888653 34566666777888887777554211 112
Q ss_pred hhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhh
Q 009194 204 VELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLL 283 (540)
Q Consensus 204 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 283 (540)
..+.++..|+.+.+..+....-.......+|+.+.+.... ..-.......+..++.+.+... ...+ ........
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~--~~~i--~~~~F~~~ 275 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNN--KLRI--GGSLFYNC 275 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCT--TCEE--CSCTTTTC
T ss_pred hhhccccccceeecCCCceEeehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCC--ccee--eccccccc
Confidence 3345566666555543321111111112566666552111 0000001234555666665431 1111 11111122
Q ss_pred cccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCC
Q 009194 284 QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE 363 (540)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 363 (540)
..++........ . ... .+..+.+|+.+.+.. +++.+... ....+.+|+.+.|.+ .++.+....
T Consensus 276 ~~l~~~~~~~~~----i-~~~-~F~~~~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~a--- 338 (394)
T 4fs7_A 276 SGLKKVIYGSVI----V-PEK-TFYGCSSLTEVKLLD--SVKFIGEE----AFESCTSLVSIDLPY--LVEEIGKRS--- 338 (394)
T ss_dssp TTCCEEEECSSE----E-CTT-TTTTCTTCCEEEECT--TCCEECTT----TTTTCTTCCEECCCT--TCCEECTTT---
T ss_pred cccceeccCcee----e-ccc-ccccccccccccccc--ccceechh----hhcCCCCCCEEEeCC--cccEEhHHh---
Confidence 334443332211 0 111 144566777777743 35555322 345566777777743 355554433
Q ss_pred CCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEc
Q 009194 364 DQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVE 402 (540)
Q Consensus 364 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 402 (540)
+..+.+|+.+.+.. +++.+.. ..+.++++|+++.+.
T Consensus 339 F~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 339 FRGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEE
T ss_pred ccCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEEC
Confidence 45567777777753 3665533 334667777777764
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.65 E-value=4.1e-07 Score=90.19 Aligned_cols=212 Identities=12% Similarity=0.107 Sum_probs=130.5
Q ss_pred CCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEE
Q 009194 37 KDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTL 113 (540)
Q Consensus 37 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L 113 (540)
.+++.+.+.. .+..++. +.+|++|+.+.+..+.. ..++...|. +..|+.+.+..+ +..++ ..+.++++|+.+
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI--TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC--SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc--eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 3577888875 5666654 33889999999988775 667776676 578888888744 55544 456788888888
Q ss_pred EcCCCccCC--cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCcc----ccccchhhhhcCCccceEEcc
Q 009194 114 CLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWW----LEVIAPNVISKLSQLEELYMG 186 (540)
Q Consensus 114 ~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~----~~~~~~~~l~~l~~L~~L~l~ 186 (540)
.+..+ ++. ...+.+ .+|+.+.+.. .++.++. .+.++++|+.+.+.++.. ...++...+..|++|+.+.+.
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 88764 333 245555 6788887743 4555544 377788888888766541 124666667778888888776
Q ss_pred CCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEe
Q 009194 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK 265 (540)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (540)
.+ +.. -....+.++.+|+.+.+..+ ...+...... .+|+.+.+.....+.............++.+.+-
T Consensus 309 ~~-i~~--------I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 309 ES-IRI--------LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TT-CCE--------ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred Cc-eEE--------EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 43 221 11245667777888777433 4444443322 4677777755443332221112222366777765
Q ss_pred c
Q 009194 266 G 266 (540)
Q Consensus 266 ~ 266 (540)
.
T Consensus 379 ~ 379 (401)
T 4fdw_A 379 A 379 (401)
T ss_dssp G
T ss_pred H
Confidence 4
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=6.8e-08 Score=94.05 Aligned_cols=182 Identities=16% Similarity=0.149 Sum_probs=106.0
Q ss_pred cCCCeEEEccCCCCCC---------CCCcC-CCCCccEEEcccCCCCC-------ccccHHHHhcCccCcEEEcCCCCCC
Q 009194 36 QKDPIAISLPHRDIQE---------LPERL-QCPNLQLFLLYTEGNGP-------MQVSDHFFEGMEGLKVLQFPGIGSS 98 (540)
Q Consensus 36 ~~~l~~l~l~~~~~~~---------l~~~~-~~~~L~~L~l~~~~~~~-------~~~~~~~~~~l~~L~~L~l~~~~~~ 98 (540)
+..+++|.+....++. +.... .+++|+.|.+.+..... ......++..+++|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4457777776544431 11112 56788888876543210 1123456677888888888877322
Q ss_pred CCCcccccCCCCcEEEcCCCccCC--ccccc--CCCCCCEEEecCC--C------Ccccchhc--CCCCCCCEEECCCCc
Q 009194 99 SLPSSLGRLINLQTLCLDWCELAD--IAAIG--QLKKLEILSLAYS--N------INQLPVEI--GQLTRLQLLDLSNCW 164 (540)
Q Consensus 99 ~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~--~l~~L~~L~l~~~--~------~~~lp~~~--~~l~~L~~L~l~~~~ 164 (540)
.++. + .+++|++|++..|.+.. ...+. .+++|+.|+++.+ . +..+...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 3444 3 37888888888877664 34444 6888888887531 1 22222222 347888888888777
Q ss_pred cccccchhhh--hcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194 165 WLEVIAPNVI--SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE 223 (540)
Q Consensus 165 ~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (540)
..+..+..+. ..+++|++|+++.|.+..... ......+..+++|+.|+++.|.++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA----RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHH----HHHHhhcccCCcceEEECCCCcCC
Confidence 4333322211 246788888888776541110 122333456678888888777543
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=1.3e-06 Score=86.62 Aligned_cols=133 Identities=9% Similarity=0.107 Sum_probs=89.2
Q ss_pred CccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccch-h
Q 009194 73 PMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-E 148 (540)
Q Consensus 73 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~-~ 148 (540)
...+....|.+|.+|+.+.+..+ +..++ .++.++.+|+.+++..+ ++. ...+.++.+|+.+.+..+ +..+.. .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 35566777899999999999754 66654 46889999999999765 443 367888888888766543 333333 3
Q ss_pred cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecC
Q 009194 149 IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP 220 (540)
Q Consensus 149 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 220 (540)
+..+..++...... ...+...++..+.+|+.+.+..+... -....+..+.+|+.+.+..+
T Consensus 136 F~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~---------I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 136 FKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSMET---------LHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE---------ECTTTTTTCTTCCBCCCCTT
T ss_pred eecccccccccCcc---ccccchhhhcccCCCcEEecCCccce---------eccccccCCCCceEEEcCCC
Confidence 55555444443333 33455556889999999998765322 12245677888888777543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=1e-07 Score=93.03 Aligned_cols=99 Identities=24% Similarity=0.201 Sum_probs=54.9
Q ss_pred EEcCCC-CCCCCCcccccCCCCcEEEcCC-CccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCc
Q 009194 90 LQFPGI-GSSSLPSSLGRLINLQTLCLDW-CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCW 164 (540)
Q Consensus 90 L~l~~~-~~~~l~~~l~~l~~L~~L~l~~-~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 164 (540)
++++++ .+..+|. +..+.+|++|++++ |.++. + ..++++++|++|++++|.++.+|. .+.++++|++|++++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 5555665 55666666666654 55554 2 455666666666666666554443 34566666666666655
Q ss_pred cccccchhhhhcCCccceEEccCCCcc
Q 009194 165 WLEVIAPNVISKLSQLEELYMGNGFSG 191 (540)
Q Consensus 165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (540)
+..+|...+..+. |+.|++.+|.+.
T Consensus 92 -l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4455544333333 666666655443
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=9.1e-05 Score=73.29 Aligned_cols=297 Identities=10% Similarity=0.058 Sum_probs=149.8
Q ss_pred CCC-CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCC---CCCCC-cccccCCCCcEEEcCCCccCC--cccccCC
Q 009194 57 QCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG---SSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQL 129 (540)
Q Consensus 57 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l 129 (540)
+|+ .|+++.+... ...+....|.+|.+|+.+.+..+. +..+. .++.++.+|+.+.+..+ ++. ...+..+
T Consensus 61 ~~~~~L~sI~iP~s---vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT---VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TCCSCCCEEEECTT---CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred CCCCcCEEEEECCC---eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 453 4788777654 355666667888888888876553 33443 34566777776666543 232 2566777
Q ss_pred CCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccC
Q 009194 130 KKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER 208 (540)
Q Consensus 130 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 208 (540)
.+|+.+.+... +..++. .+..+.+|+.+.+..+ +..+...++. ..+|+.+.+...... .....+..
T Consensus 137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~~---------i~~~af~~ 203 (394)
T 4gt6_A 137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVTR---------IGTNAFSE 203 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCCE---------ECTTTTTT
T ss_pred cccccccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCcccc---------cccchhhh
Confidence 77888777543 333333 3667777888777653 3445544343 345777766543222 12234555
Q ss_pred CCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccc
Q 009194 209 LTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287 (540)
Q Consensus 209 l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 287 (540)
+.++................... .......+... .....+..+.+-. ....+. ......+..|+
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ip~--~v~~i~--~~aF~~c~~L~ 268 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-----------PSQREDPAFKIPN--GVARIE--THAFDSCAYLA 268 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-----------CTTCCCSEEECCT--TEEEEC--TTTTTTCSSCC
T ss_pred ccccceecccccccccccceeeccccccccccccc-----------ccccccceEEcCC--cceEcc--cceeeeccccc
Confidence 66666665554433222221111 11111111000 0001111111110 011110 11111234445
Q ss_pred eeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCC
Q 009194 288 DLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSF 367 (540)
Q Consensus 288 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 367 (540)
.+.+-+ .+... ... .+..++.|+.+.+.. .++.+... ....+.+|+.+.|.+ +++.+.... +..|
T Consensus 269 ~i~lp~--~~~~I-~~~-aF~~c~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~a---F~~C 333 (394)
T 4gt6_A 269 SVKMPD--SVVSI-GTG-AFMNCPALQDIEFSS--RITELPES----VFAGCISLKSIDIPE--GITQILDDA---FAGC 333 (394)
T ss_dssp EEECCT--TCCEE-CTT-TTTTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEECCT--TCCEECTTT---TTTC
T ss_pred EEeccc--cccee-cCc-ccccccccccccCCC--cccccCce----eecCCCCcCEEEeCC--cccEehHhH---hhCC
Confidence 444422 11111 111 145667777777742 45555332 445566777777753 455555443 5567
Q ss_pred CCCCeEEEeeCCCCccccChHHHhhcccccEEEEcc
Q 009194 368 SNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED 403 (540)
Q Consensus 368 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 403 (540)
.+|+.+.+-. +++.+. ...+.++++|+.+++.+
T Consensus 334 ~~L~~i~ip~--sv~~I~-~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 334 EQLERIAIPS--SVTKIP-ESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TTCCEEEECT--TCCBCC-GGGGTTCTTCCEEEESS
T ss_pred CCCCEEEECc--ccCEEh-HhHhhCCCCCCEEEECC
Confidence 7788887753 466663 33456777788877765
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=0.0003 Score=69.52 Aligned_cols=111 Identities=13% Similarity=0.193 Sum_probs=67.4
Q ss_pred ccccHHHHhcCc-cCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCc---cCC--cccccCCCCCCEEEecCCCCcccc
Q 009194 74 MQVSDHFFEGME-GLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCE---LAD--IAAIGQLKKLEILSLAYSNINQLP 146 (540)
Q Consensus 74 ~~~~~~~~~~l~-~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~---~~~--~~~i~~l~~L~~L~l~~~~~~~lp 146 (540)
..+....|.+++ .|+.+.+..+ ++.+. .++.++.+|+.+.+..+. ++. ...+..+.+|+.+.+..+ ++.++
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 345555567774 4888888654 44443 456778888888877653 333 256666777776655443 44443
Q ss_pred hh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCC
Q 009194 147 VE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (540)
Q Consensus 147 ~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 188 (540)
.. +..+.+|+.+.+... ...++...+..+.+|+.+.+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 33 566777777777643 34555555666777777766543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=3.2e-06 Score=74.02 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=58.0
Q ss_pred HHHhcCccCcEEEcCCC-CCCC-----CCcccccCCCCcEEEcCCCccCC--c----ccccCCCCCCEEEecCCCCc---
Q 009194 79 HFFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN--- 143 (540)
Q Consensus 79 ~~~~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~~~--- 143 (540)
.++...+.|++|++++| .+.. +...+...++|++|++++|.+.+ . ..+...++|++|++++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455666666666666 5532 33344455666666666666553 1 33344456666666666555
Q ss_pred --ccchhcCCCCCCCEEEC--CCCccccccch----hhhhcCCccceEEccCCCc
Q 009194 144 --QLPVEIGQLTRLQLLDL--SNCWWLEVIAP----NVISKLSQLEELYMGNGFS 190 (540)
Q Consensus 144 --~lp~~~~~l~~L~~L~l--~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~ 190 (540)
.+...+...++|++|++ ++|. ++.... ..+...+.|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 23444555556666666 4454 222111 1133445566666655544
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.05 E-value=5e-06 Score=80.85 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=109.6
Q ss_pred hcCCCeEEEccCCCCC----------CCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-CCc
Q 009194 35 IQKDPIAISLPHRDIQ----------ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPS 102 (540)
Q Consensus 35 ~~~~l~~l~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~ 102 (540)
..++++.|.+.+...+ .+.... .+|+|+.|.+.++.. ..++. + .+++|+.|++..+.+.. ...
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~-~--~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK-K--PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--CBCCS-C--BCTTCSEEEEECSBCCHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--ceecc-c--cCCCCcEEEEecCCCChHHHH
Confidence 3679999999765432 122322 789999999998742 23332 2 48899999999887642 112
Q ss_pred cc--ccCCCCcEEEcCCC--c------cCCc-ccc--cCCCCCCEEEecCCCCcc-cchh---cCCCCCCCEEECCCCcc
Q 009194 103 SL--GRLINLQTLCLDWC--E------LADI-AAI--GQLKKLEILSLAYSNINQ-LPVE---IGQLTRLQLLDLSNCWW 165 (540)
Q Consensus 103 ~l--~~l~~L~~L~l~~~--~------~~~~-~~i--~~l~~L~~L~l~~~~~~~-lp~~---~~~l~~L~~L~l~~~~~ 165 (540)
.+ ..+++|++|+++.+ . +... ..+ ..+++|++|++.+|.+.. .+.. ...+++|++|+++.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~- 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV- 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence 23 37899999998632 1 1111 122 357999999999998762 2222 2468899999999887
Q ss_pred cccc-----chhhhhcCCccceEEccCCCcccccccCCCccchhhccC-CCCccEEEeecCC
Q 009194 166 LEVI-----APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPD 221 (540)
Q Consensus 166 ~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 221 (540)
++.. +.. +..+++|+.|+++.|.+. +.....+.. + ...++++.+.
T Consensus 291 L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~--------d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDH-VDKIKHLKFINMKYNYLS--------DEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC--------HHHHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhh-cccCCcceEEECCCCcCC--------HHHHHHHHHHc--CCEEEecCCc
Confidence 4432 222 356899999999998765 123333332 2 3456777655
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=6.5e-06 Score=72.02 Aligned_cols=116 Identities=14% Similarity=0.091 Sum_probs=84.1
Q ss_pred cccccCCCCcEEEcCCC-ccCC--c----ccccCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCcccccc
Q 009194 102 SSLGRLINLQTLCLDWC-ELAD--I----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVI 169 (540)
Q Consensus 102 ~~l~~l~~L~~L~l~~~-~~~~--~----~~i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~ 169 (540)
..+...++|++|++++| .+.+ . ..+...++|++|++++|.+. .+...+...++|++|++++|. ++..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 34567889999999999 7764 1 56667889999999999886 345556677889999999987 4432
Q ss_pred -----chhhhhcCCccceEEc--cCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194 170 -----APNVISKLSQLEELYM--GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE 223 (540)
Q Consensus 170 -----~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (540)
... +...+.|++|++ ++|.+.... .......+...+.|++|++++|.++
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g----~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNNV----EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH----HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHHH----HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 222 566778999999 777765211 1133455667788999999988753
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=3.4e-05 Score=71.11 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=47.3
Q ss_pred ccCCCCcEEEcCCCccCCc----ccccCCCCCCEEEecCCCCcccchhcCCCC--CCCEEECCCCccccccc------hh
Q 009194 105 GRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEIGQLT--RLQLLDLSNCWWLEVIA------PN 172 (540)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~~----~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~~------~~ 172 (540)
.++++|++|++++|.++.+ ..+..+++|+.|++++|.+..+. .+..+. +|++|++.+|.....+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4566677777777766552 33446677777777777666542 233333 67777777776444333 22
Q ss_pred hhhcCCccceEE
Q 009194 173 VISKLSQLEELY 184 (540)
Q Consensus 173 ~l~~l~~L~~L~ 184 (540)
++..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 366777787776
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.63 E-value=7.6e-05 Score=68.74 Aligned_cols=87 Identities=22% Similarity=0.219 Sum_probs=54.4
Q ss_pred cCCCCCCEEEecCCCCcccc---hhcCCCCCCCEEECCCCccccccchhhhhcCC--ccceEEccCCCcccccccCCCcc
Q 009194 127 GQLKKLEILSLAYSNINQLP---VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS--QLEELYMGNGFSGWEKVEGGSNA 201 (540)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~ 201 (540)
.++++|+.|++++|.++.++ ..+..+++|++|++++|. +..+.. +..+. +|++|++.+|.+..... .....
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~-~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--LDKIKGLKLEELWLDGNSLCDTFR-DQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG--GGGGTTSCCSEEECTTSTTGGGCS-SHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh--hhhcccCCcceEEccCCcCccccC-cchhH
Confidence 46788888888888777544 445678888888888877 444422 44444 78888888887652100 00011
Q ss_pred chhhccCCCCccEEEe
Q 009194 202 SLVELERLTELTTLEI 217 (540)
Q Consensus 202 ~~~~l~~l~~L~~L~l 217 (540)
....+..+++|+.|+-
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 2234566778877653
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.43 E-value=0.016 Score=56.54 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=44.3
Q ss_pred CCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccC
Q 009194 307 GEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS 386 (540)
Q Consensus 307 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 386 (540)
+..+..|+.+.+.. .++.+... ....+.+|+.+.+.+ .++.+.... +..+++|+.+.+.+. .++.++.
T Consensus 236 f~~~~~L~~i~lp~--~v~~I~~~----aF~~~~~l~~i~l~~--~i~~i~~~a---F~~c~~L~~i~l~~~-~i~~I~~ 303 (379)
T 4h09_A 236 FYGMKALDEIAIPK--NVTSIGSF----LLQNCTALKTLNFYA--KVKTVPYLL---CSGCSNLTKVVMDNS-AIETLEP 303 (379)
T ss_dssp TTTCSSCCEEEECT--TCCEECTT----TTTTCTTCCEEEECC--CCSEECTTT---TTTCTTCCEEEECCT-TCCEECT
T ss_pred ccCCccceEEEcCC--CccEeCcc----ccceeehhccccccc--cceeccccc---ccccccccccccccc-ccceehh
Confidence 34556666666643 24444221 334455666666642 344444332 455677777777542 4555533
Q ss_pred hHHHhhcccccEEEEc
Q 009194 387 FSMAKNLLRLQKVKVE 402 (540)
Q Consensus 387 ~~~~~~l~~L~~L~l~ 402 (540)
..+.++.+|+.+.+-
T Consensus 304 -~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 304 -RVFMDCVKLSSVTLP 318 (379)
T ss_dssp -TTTTTCTTCCEEECC
T ss_pred -hhhcCCCCCCEEEcC
Confidence 334566677777664
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.32 E-value=0.021 Score=55.71 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=51.5
Q ss_pred HhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCC
Q 009194 81 FEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQ 156 (540)
Q Consensus 81 ~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~ 156 (540)
+..+..|+.+.+..+ +..+ ...+.++.+|+.+.+..+ ++. ...+.++.+|+.+.+..+ +..++.. +..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 445555666555433 1211 223445555666655443 222 244555556666655432 3333332 45566666
Q ss_pred EEECCCCccccccchhhhhcCCccceEEccC
Q 009194 157 LLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (540)
Q Consensus 157 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (540)
.+.+.++. +..++...+..+.+|+.+.+..
T Consensus 290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccc-cceehhhhhcCCCCCCEEEcCc
Confidence 66665443 4455555555666666666543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.12 E-value=0.026 Score=48.92 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHhcCccCcEEEcCCC-CCCC-----CCcccccCCCCcEEEcCCCccCC--c----ccccCCCCCCEEEecCCCCc--
Q 009194 78 DHFFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-- 143 (540)
Q Consensus 78 ~~~~~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~~~-- 143 (540)
..+..+-+.|+.|+++++ .+.. +-..+..-..|+.|++++|.+.+ . +.+..-+.|+.|+++.|.+.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 334445566666666654 5432 33334444556667776666653 1 33344566666666666655
Q ss_pred ---ccchhcCCCCCCCEEECCCC
Q 009194 144 ---QLPVEIGQLTRLQLLDLSNC 163 (540)
Q Consensus 144 ---~lp~~~~~l~~L~~L~l~~~ 163 (540)
.+-..+..-+.|++|+++++
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCC
Confidence 33334444455666666543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.32 E-value=0.074 Score=42.78 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=16.5
Q ss_pred CCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (540)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (540)
+|++|++++|. +..++...+..+++|+.|++.+|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 34455554444 444444444444445555544443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.14 E-value=0.099 Score=42.04 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=24.6
Q ss_pred EEEcCCCCCC--CCCcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCC
Q 009194 89 VLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNI 142 (540)
Q Consensus 89 ~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~ 142 (540)
+++.+++.++ .+|..+ -.+|++|+|++|.++. + ..+..+++|++|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555554 455322 1235555555555544 2 3444455555555555433
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.70 E-value=0.054 Score=46.94 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=62.9
Q ss_pred ccCCCCcEEEcCCC-ccCC-----c-ccccCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCccccccchh
Q 009194 105 GRLINLQTLCLDWC-ELAD-----I-AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIAPN 172 (540)
Q Consensus 105 ~~l~~L~~L~l~~~-~~~~-----~-~~i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 172 (540)
.+-+.|++|+++++ .+.+ + +.+..-..|+.|++++|.+. .+...+..-+.|++|+++.|. ++.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH
Confidence 34566888888875 5653 1 45556677888888887776 344445556677777777776 3322211
Q ss_pred h----hhcCCccceEEccCCCc-ccccccCCCccchhhccCCCCccEEEeecCC
Q 009194 173 V----ISKLSQLEELYMGNGFS-GWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (540)
Q Consensus 173 ~----l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (540)
. +..-+.|++|+++++.. ..... ........+..-+.|+.|++..+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~--g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQ--VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHH--HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHH--HHHHHHHHHHhCCCcCeEeccCCC
Confidence 1 23334577777765432 10000 011233344555667777766554
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=62.04 E-value=1.4 Score=45.04 Aligned_cols=17 Identities=12% Similarity=0.387 Sum_probs=15.4
Q ss_pred CcchhhhHHHhhhcCCC
Q 009194 1 MHDVIHVVAVSIATEER 17 (540)
Q Consensus 1 mHdli~d~a~~~~~e~~ 17 (540)
|||+|||+|+.++++++
T Consensus 456 mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCHHHHHHHHTTSCTHH
T ss_pred eChHHHHHHHHHHHHHH
Confidence 89999999999998764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.42 E-value=44 Score=24.80 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=14.8
Q ss_pred CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCC
Q 009194 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG 94 (540)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 94 (540)
+|.+|+++.+-.+. ..+-...|.+|.+|+.+.+..
T Consensus 18 ~c~~L~~i~iP~~v---~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPNI---GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTTS---SCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCch---heEcHHHHhccCCccEEEEcC
Confidence 44444444444432 233333344444444444433
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.62 E-value=69 Score=23.68 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=19.5
Q ss_pred cccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194 75 QVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (540)
Q Consensus 75 ~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~ 117 (540)
.+..+.|.+|..|+.+.+..+ ++.+ ...|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 333444555555555555543 2222 12344555555555543
Done!