Query 009195
Match_columns 540
No_of_seqs 280 out of 2428
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:58:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 1.7E-27 5.8E-32 254.6 13.4 361 105-535 55-485 (491)
2 4aps_A DI-OR tripeptide H+ sym 99.9 2.3E-24 7.8E-29 230.5 32.2 185 64-281 8-198 (491)
3 2xut_A Proton/peptide symporte 99.9 8.9E-25 3E-29 235.8 27.6 183 68-284 11-203 (524)
4 1pw4_A Glycerol-3-phosphate tr 99.9 6.2E-23 2.1E-27 216.2 19.2 177 66-279 25-206 (451)
5 3o7q_A L-fucose-proton symport 99.9 7.4E-20 2.5E-24 192.0 31.2 180 65-277 22-227 (438)
6 2gfp_A EMRD, multidrug resista 99.8 2.1E-18 7.1E-23 177.6 16.2 167 72-274 3-169 (375)
7 2cfq_A Lactose permease; trans 99.7 7.4E-17 2.5E-21 169.3 11.1 169 70-269 8-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 5.9E-13 2E-17 139.7 16.8 178 69-278 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.3 3.4E-11 1.2E-15 125.8 20.1 167 70-274 259-427 (438)
10 2cfq_A Lactose permease; trans 99.3 1.9E-11 6.5E-16 127.9 15.1 174 71-279 222-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.6E-10 5.4E-15 122.9 11.0 186 70-282 284-474 (491)
12 4gc0_A D-xylose-proton symport 99.1 9.4E-09 3.2E-13 109.0 23.2 183 72-286 280-469 (491)
13 2gfp_A EMRD, multidrug resista 98.8 1.6E-09 5.6E-14 110.8 4.4 164 69-266 199-363 (375)
14 2xut_A Proton/peptide symporte 98.1 2.7E-06 9.1E-11 90.9 6.0 88 186-279 404-502 (524)
15 2knc_B Integrin beta-3; transm 28.8 9.7 0.00033 29.1 -0.5 26 514-539 42-67 (79)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=1.7e-27 Score=254.65 Aligned_cols=361 Identities=14% Similarity=0.119 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccc
Q 009195 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (540)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (540)
...+++.+.+.+|..+|++++|+++||+ |||++++++.++++++.++++++......... .. .-.....
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~--------~~~~~~a 123 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DN--------TVPVYLA 123 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SS--------SCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hh--------HHHHHHh
Confidence 4567888999999999999999999998 99999999999999999998864211000000 00 0000011
Q ss_pred hhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhc--------c
Q 009195 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------H 256 (540)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~--------~ 256 (540)
.+...++++|++.|+|.|+..+..+.+++|..|++. |++..++++.+..+|..+++.++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 578899999999999999999999999999999998 99999999999999999988887766432 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccc
Q 009195 257 GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIA 336 (540)
Q Consensus 257 gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 336 (540)
+||+.+.+..+..++.++..+ ..||+|+| +..+++.+++.+..+|..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~--------------------------------~~peSp~~-L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 198 GWRYMFASECIPALLFLMLLY--------------------------------TVPESPRW-LMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHTTHHHHHHHHHHGG--------------------------------GSCCCHHH-HHHTTCHHHHHHHHHHHH
T ss_pred hhHHHhhhhhhhhhhhhhhhh--------------------------------cCCCChHH-HHHcCchhHHHHhHHHhc
Confidence 366666555554444333322 25888888 777766665555444432
Q ss_pred cCCCchh--hHHHhhhhccccCCCCCCcccchhhHHHHHHHHhhhhhhhhhHHHH-HHhhhhhhHHHHHHhhhccc----
Q 009195 337 HTDDFRC--LDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN-VILTEFLTLSVQQAYTMNTH---- 409 (540)
Q Consensus 337 ~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~---- 409 (540)
..+.... .+......... ..... ......+++.........+.... .....+.+.+ .+....+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 316 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDHGR--KTGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV-FKTLGASTDIALL 316 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSSCCHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhh--hhhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH-HHhcCCCccchhh
Confidence 2111000 00000000000 00000 00000011111111111111110 0111111110 000000000
Q ss_pred ------c--------------CCCCCCChhH---HHHHHHHHHHHH-------------HHHh-----------------
Q 009195 410 ------M--------------GHPRGASQLQ---RVGIGLAVSILS-------------VIWA----------------- 436 (540)
Q Consensus 410 ------~--------------~~~~~~~~~~---~~~~g~~~~~~~-------------~~~~----------------- 436 (540)
. |.+++..... .+.++++..... +...
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 396 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0 1111111100 001111100000 0000
Q ss_pred --ccchhHHHHHHHHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHHhhhh
Q 009195 437 --APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 514 (540)
Q Consensus 437 --~P~~~rg~~~g~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~~~~~ 514 (540)
+|.+.|++++|+...++++++++++.+.+.+.+.. |... ..+..+.|++++++++++.++.+++.|
T Consensus 397 E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~---------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 397 EIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS---------WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH---------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHh---hhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 89999999999999999999999999988875421 1000 001235688899999999999999999
Q ss_pred cccccccccCCCchhhhhhcc
Q 009195 515 RYKYRSEQKHGNDYEVMENKL 535 (540)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~ 535 (540)
|||+|++||+++.+|..+.+.
T Consensus 465 ETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 465 ETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp CCTTCCHHHHGGGTC------
T ss_pred CCCCCCHHHHHHHhCCCCccc
Confidence 999999999988887655443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=2.3e-24 Score=230.53 Aligned_cols=185 Identities=23% Similarity=0.392 Sum_probs=162.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchHH
Q 009195 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYW 137 (540)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~-~~GR~~ 137 (540)
.+++++..+.+.+..++..+++|++.++++.|+++. +|++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 345667888999999999999999999999999998 99999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 009195 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (540)
Q Consensus 138 ~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~ 217 (540)
++.++.++..++.++++++ .+...++++|++.|++.+...+...++++|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 138 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYD 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence 9999999999998888765 356788899999999999999999999999999
Q ss_pred CCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 218 ~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
+++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++++++++..+
T Consensus 139 ~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 139 EHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp SCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 87732 6778888999999999999999999999999999999987777666666554433
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=8.9e-25 Score=235.83 Aligned_cols=183 Identities=26% Similarity=0.479 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg------~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i 141 (540)
++.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3456678888899999999999999999999999 9999999999999999999999999999995599999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 009195 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (540)
Q Consensus 142 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~ 220 (540)
+.++..++.++++++ . +...++++|++.|++.+...+...++++|++|+++
T Consensus 91 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 999999998888775 3 57788899999999999999999999999999888
Q ss_pred chhhhhhhh---HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccccc
Q 009195 221 KDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (540)
Q Consensus 221 ~~~~~~R~~---~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~ 284 (540)
|++ .+++++...++|..++|.+++++.+..||++.|++.++..+++.++++...++.+
T Consensus 143 ------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 203 (524)
T 2xut_A 143 ------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYI 203 (524)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCC
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 754 4555888999999999999999998899999999888877666665554444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.90 E-value=6.2e-23 Score=216.19 Aligned_cols=177 Identities=13% Similarity=0.060 Sum_probs=150.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l 145 (540)
.+|+.++.+.+..++..+..+.+...++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 3456667777777777777655555554 455567 9999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHH----hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 009195 146 YLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (540)
Q Consensus 146 ~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~ 221 (540)
..++.+++++ + .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~- 152 (451)
T 1pw4_A 102 AAAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE- 152 (451)
T ss_dssp HHHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-
T ss_pred HHHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-
Confidence 9999998887 4 356788899999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHh
Q 009195 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 222 ~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~~ 279 (540)
|++.+++++...++|..++|.+++++.+..| ||+.|++.+++.++..++.++.
T Consensus 153 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 153 -----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888888 9999998887766655554443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.87 E-value=7.4e-20 Score=192.04 Aligned_cols=180 Identities=12% Similarity=-0.009 Sum_probs=149.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+++++.++.+.+..++..+..+.+... .+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 455666777777777777776544444 5567889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++...... .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999999888332110 467889999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhh-hccc-------------------------hHHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~-~~~g-------------------------w~~~f~i~~i~~~~~~~~~~ 277 (540)
|++.+++++...++|..++|.+++++. +..+ ||+.|++.++..++..++++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5544 99999776665554444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.78 E-value=2.1e-18 Score=177.60 Aligned_cols=167 Identities=13% Similarity=0.106 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
+.+.+..++..+......+.++ .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 3445556666666655555544 45678999999999999999999999999999999998 999999999999999998
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
++.++ .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88876 567889999999999999999999999999999988 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~ 274 (540)
++++....+|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999887766554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.68 E-value=7.4e-17 Score=169.27 Aligned_cols=169 Identities=11% Similarity=-0.121 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+......++..+++..+.++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||++++++.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 455566666666667666778899999999999999999999999999999999999999998 9999999888776553
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
...+...... ... ..++.++++.+++.+...+...+...+..++.. ..|+
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 2222111000 000 012234444444443333333333333332211 1155
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~ 269 (540)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 55666667788999999999999876 57999888765553
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=5.9e-13 Score=139.66 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYL 147 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~~i~i~~~l~~ 147 (540)
+.++...+..++..+.++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++||++ |||+.+.++.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46777888888888888899999999999889999999999999999999999999999999942 88888887776655
Q ss_pred -HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 148 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
++.+++.+. ++ .+...+.+..++.|++.+...+....++.|.+|++.
T Consensus 332 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 379 (451)
T 1pw4_A 332 TIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 379 (451)
T ss_dssp HHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------
Confidence 444443322 11 245566677788999988888888999999999988
Q ss_pred hhhHHHHHHHHHhH-HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 227 R~~~~~~~~~~~~l-g~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999998888777666665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.35 E-value=3.4e-11 Score=125.80 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
.++...+..++.....+.+..+++.| +++.+|++..+++...+...++..++.+++|+++||+ |||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 56666677777777788888999999 8888899999999999999999999999999999997 999999999988888
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
+.+++... .+... .+..++.|++.+...+...++..|.+|++ |+
T Consensus 338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 77766653 22332 33447888999999999999999999843 44
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~ 274 (540)
.+.++.. ...+|+.++|.+.+++.+..| ++..|++.+++.++.++
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 5555544 556999999999999999988 99888876655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.30 E-value=1.9e-11 Score=127.91 Aligned_cols=174 Identities=10% Similarity=0.051 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~---~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~ 147 (540)
.+...+..++....++....+++.|+.+.++.. ....+...++..++..++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 333333333334444444456788887766532 33445666666677788899999999998 99999988887777
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++.+++.+. .+...+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 765554432 234455556666777766666677889999999887 9
Q ss_pred hhHHHH-HHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 228 ~~~~~~-~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
+++.++ ++....+|+.++|.+++++.+..|+...|.+.+++.+++.++.+..
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 999888 5777889999999999999988888888888777766666554443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.12 E-value=1.6e-10 Score=122.91 Aligned_cols=186 Identities=12% Similarity=0.019 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-----HHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~-----i~~~ 144 (540)
..+.+.+..++....++....+++.|+.+.++.+..+.+...+...++..++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 345555555666666666777888899988888866677777888888888899999999998 9886554 5666
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++........ .+...+...+.+..++.|++.+...+....++.|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 66666555544321000 0000245566677788999999989999999999999999
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~ 282 (540)
|+++.++++...++|..+++.+.+++.+. ++.+.|.+.+++.+++.++.+...++
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764 56667777666666655555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.09 E-value=9.4e-09 Score=109.00 Aligned_cols=183 Identities=9% Similarity=0.012 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
.......+....+.+.+ .+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 280 IGVMLSIFQQFVGINVV-LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHTCHHHH-HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHH-HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence 33333333333333333 3445566677888888777777777888889999999999998 999999999888887776
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHH-HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY-TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
.+...... .. .....+. ...+..+++ .+..+....+.+|.+|++. |+++
T Consensus 358 ~l~~~~~~----~~-------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~ 407 (491)
T 4gc0_A 358 SLGTAFYT----QA-------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKA 407 (491)
T ss_dssp HHHHHHHT----TC-------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHH
T ss_pred HHHHHHhc----cc-------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHH
Confidence 66554220 00 1122222 222222222 3344667789999999999 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhh------ccchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~------~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~ 286 (540)
.++.+....+++.+++.+.+.+.+ ..++.+.|++.+++.+++.+..++..|+.+.+
T Consensus 408 ~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 408 LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 999888888888888887766543 23456677777777777777666666666544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.82 E-value=1.6e-09 Score=110.79 Aligned_cols=164 Identities=12% Similarity=-0.097 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH-HH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l-~~ 147 (540)
+..+...+..++.....+.+..+.+.|+++.+|.+..+.+...+...++..++.++.++++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566677777777888888888889999988999999999999999999999999999999997 872 2233222 22
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++......... +. .+...+++..++.|++.+...+....+..|.+| +. |
T Consensus 276 ~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----GV-------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----HH-------------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----cc-------------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 00 245556677788899999999999999999998 56 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHH
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~ 266 (540)
++..++++...++|..++|.+.+++.+..+|...+.+..
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999988777877766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.08 E-value=2.7e-06 Score=90.89 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhcc--ch-----
Q 009195 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (540)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~--gw----- 258 (540)
+...+++..++.|++.+...+....+..|.+|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 34566677889999999999999999999999998 999999999999999999999999987643 23
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHh
Q 009195 259 ----GSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 259 ----~~~f~i~~i~~~~~~~~~~~~ 279 (540)
+..|++.+++.+++.+++++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH
Confidence 223555555555555444443
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.83 E-value=9.7 Score=29.14 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=10.9
Q ss_pred hcccccccccCCCchhhhhhcccCCC
Q 009195 514 YRYKYRSEQKHGNDYEVMENKLYDSP 539 (540)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (540)
+++++-.+|......++.+|..|.++
T Consensus 42 rE~~kFEkE~~~~~w~~~~NPlyk~~ 67 (79)
T 2knc_B 42 KEFAKFEEERARAKWDTANNPLYKEA 67 (79)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHC
T ss_pred HHHHHHHHHHHhcccccCCCCCccCC
Confidence 44444333333333344455554443
Done!