Your job contains 1 sequence.
>009196
MASRLRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGL
LGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDR
PLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREK
KLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSS
EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMK
GIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLAD
WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE
QRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIP
QRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009196
(540 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-1260 - symbol:dus3l "dihydrouridine ... 1242 6.8e-132 2
UNIPROTKB|Q96G46 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 1200 4.3e-128 2
UNIPROTKB|F1PS34 - symbol:LOC100856098 "Uncharacterized p... 1201 1.5e-127 2
UNIPROTKB|F1NGP4 - symbol:DUS3L "Uncharacterized protein"... 1200 2.4e-127 2
UNIPROTKB|E1BGZ1 - symbol:DUS3L "Uncharacterized protein"... 1196 2.4e-127 2
UNIPROTKB|F1SBU5 - symbol:LOC100513458 "Uncharacterized p... 1197 3.0e-127 2
MGI|MGI:2147092 - symbol:Dus3l "dihydrouridine synthase 3... 1195 2.7e-126 2
RGD|1563228 - symbol:Dus3l "dihydrouridine synthase 3-lik... 1192 1.9e-125 2
FB|FBgn0032819 - symbol:CG10463 species:7227 "Drosophila ... 1064 2.1e-111 2
DICTYBASE|DDB_G0292686 - symbol:dus3l "tRNA-dihydrouridin... 1086 6.1e-110 1
WB|WBGene00021377 - symbol:Y37E11B.5 species:6239 "Caenor... 941 1.4e-94 1
SGD|S000004393 - symbol:DUS3 "Dihydrouridine synthase" sp... 451 4.0e-86 3
ASPGD|ASPL0000051905 - symbol:AN0818 species:162425 "Emer... 471 1.4e-83 4
CGD|CAL0005565 - symbol:orf19.1565 species:5476 "Candida ... 679 5.3e-69 2
UNIPROTKB|Q5ALL3 - symbol:DUS3 "tRNA-dihydrouridine(47) s... 679 5.3e-69 2
UNIPROTKB|A4RLF4 - symbol:DUS3 "tRNA-dihydrouridine(47) s... 480 9.7e-66 2
POMBASE|SPAC16.04 - symbol:dus3 "tRNA dihydrouridine synt... 627 3.3e-65 2
UNIPROTKB|K7EQU9 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 451 1.2e-42 1
UNIPROTKB|K7EM42 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 383 1.9e-35 1
TIGR_CMR|GSU_1005 - symbol:GSU_1005 "dihydrouridine synth... 335 6.0e-30 1
TIGR_CMR|CJE_0118 - symbol:CJE_0118 "tRNA-dihydrouridine ... 333 1.0e-29 1
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy... 324 1.0e-28 1
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu... 324 1.0e-28 1
TIGR_CMR|NSE_0373 - symbol:NSE_0373 "putative tRNA-dihydr... 316 8.0e-28 1
UNIPROTKB|Q8EJR8 - symbol:dusB "tRNA-dihydrouridine synth... 311 2.9e-27 1
TIGR_CMR|SO_0394 - symbol:SO_0394 "conserved hypothetical... 311 2.9e-27 1
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s... 307 8.0e-27 1
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ... 307 8.0e-27 1
UNIPROTKB|Q87VS1 - symbol:dusB "tRNA-dihydrouridine synth... 304 1.7e-26 1
UNIPROTKB|Q489F6 - symbol:CPS_0550 "tRNA-dihydrouridine s... 302 2.9e-26 1
TIGR_CMR|CPS_0550 - symbol:CPS_0550 "NifR3/Smm1 family pr... 302 2.9e-26 1
UNIPROTKB|P0ABT5 - symbol:dusB "tRNA-dihydrouridine synth... 299 6.1e-26 1
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr... 278 1.3e-25 2
TIGR_CMR|ECH_0758 - symbol:ECH_0758 "putative tRNA-dihydr... 292 3.6e-25 1
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy... 287 1.3e-24 1
UNIPROTKB|Q9KV66 - symbol:dusB "tRNA-dihydrouridine synth... 285 2.1e-24 1
TIGR_CMR|VC_0291 - symbol:VC_0291 "NifR3/Smm1 family prot... 285 2.1e-24 1
TAIR|locus:2114713 - symbol:AT3G49640 species:3702 "Arabi... 258 1.9e-21 1
UNIPROTKB|O53835 - symbol:dus "Probable tRNA-dihydrouridi... 269 2.9e-21 1
TIGR_CMR|SPO_2089 - symbol:SPO_2089 "tRNA-dihydrouridine ... 254 5.2e-21 1
UNIPROTKB|K7ER20 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 233 1.0e-18 1
DICTYBASE|DDB_G0283877 - symbol:dus2l "tRNA-dihydrouridin... 224 9.4e-16 1
ZFIN|ZDB-GENE-100922-233 - symbol:dus2l "dihydrouridine s... 221 4.1e-15 1
CGD|CAL0003746 - symbol:orf19.966 species:5476 "Candida a... 214 5.6e-15 1
DICTYBASE|DDB_G0291360 - symbol:dus4l "tRNA-dihydrouridin... 214 6.1e-15 1
FB|FBgn0030554 - symbol:CG1434 species:7227 "Drosophila m... 212 3.5e-14 1
UNIPROTKB|Q487W0 - symbol:CPS_0906 "tRNA-dihydrouridine s... 202 8.3e-14 1
TIGR_CMR|CPS_0906 - symbol:CPS_0906 "NifR3/Smm1 family pr... 202 8.3e-14 1
POMBASE|SPCC777.15 - symbol:SPCC777.15 "tRNA dihydrouridi... 203 9.0e-14 1
UNIPROTKB|K7EMI3 - symbol:K7EMI3 "Uncharacterized protein... 187 9.7e-14 1
TAIR|locus:2155528 - symbol:AT5G67220 species:3702 "Arabi... 204 2.0e-13 1
UNIPROTKB|P33371 - symbol:dusC "tRNA-dihydrouridine synth... 199 2.2e-13 1
UNIPROTKB|E2RKU2 - symbol:DUS2L "Uncharacterized protein"... 205 2.4e-13 1
ZFIN|ZDB-GENE-040801-233 - symbol:dus4l "dihydrouridine s... 197 3.1e-13 1
DICTYBASE|DDB_G0278803 - symbol:dus1l "tRNA-dihydrouridin... 201 4.8e-13 1
WB|WBGene00013201 - symbol:Y54E5A.6 species:6239 "Caenorh... 200 6.2e-13 1
SGD|S000004397 - symbol:DUS4 "Dihydrouridine synthase" sp... 193 2.3e-12 1
UNIPROTKB|F1NHN2 - symbol:DUS4L "tRNA-dihydrouridine synt... 187 5.1e-12 1
POMBASE|SPBC36B7.04 - symbol:SPBC36B7.04 "tRNA dihydrouri... 190 6.5e-12 1
UNIPROTKB|Q607T6 - symbol:MCA1669 "tRNA-dihydrouridine sy... 188 7.9e-12 1
POMBASE|SPBC1709.06 - symbol:dus2 "tRNA dihydrouridine sy... 167 8.7e-12 2
UNIPROTKB|Q884C6 - symbol:dusC "tRNA-dihydrouridine synth... 185 1.1e-11 1
UNIPROTKB|Q0VC60 - symbol:DUS2L "Uncharacterized protein"... 188 1.8e-11 1
UNIPROTKB|I3LES5 - symbol:DUS2L "Uncharacterized protein"... 188 1.8e-11 1
UNIPROTKB|Q8EFG7 - symbol:dusC "tRNA-dihydrouridine synth... 181 3.0e-11 1
TIGR_CMR|SO_2006 - symbol:SO_2006 "NifR3/Smm1 family prot... 181 3.0e-11 1
MGI|MGI:1913619 - symbol:Dus2l "dihydrouridine synthase 2... 184 5.0e-11 1
RGD|1305612 - symbol:Dus2l "dihydrouridine synthase 2-lik... 184 5.0e-11 1
DICTYBASE|DDB_G0277081 - symbol:DDB_G0277081 "tRNA-dihydr... 180 8.2e-11 1
CGD|CAL0004455 - symbol:orf19.1404 species:5476 "Candida ... 178 2.0e-10 1
UNIPROTKB|Q9NX74 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 178 2.3e-10 1
FB|FBgn0032750 - symbol:CG10495 species:7227 "Drosophila ... 174 3.9e-10 1
UNIPROTKB|Q8EAJ0 - symbol:dusA "tRNA-dihydrouridine synth... 172 4.1e-10 1
TIGR_CMR|SO_3912 - symbol:SO_3912 "TIM-barrel protein, yj... 172 4.1e-10 1
WB|WBGene00009452 - symbol:F36A2.2 species:6239 "Caenorha... 176 4.3e-10 1
UNIPROTKB|E2RRJ8 - symbol:DUS4L "Uncharacterized protein"... 170 5.7e-10 1
UNIPROTKB|O95620 - symbol:DUS4L "tRNA-dihydrouridine(20a/... 168 9.7e-10 1
UNIPROTKB|E1C4F6 - symbol:DUS2L "Uncharacterized protein"... 172 1.0e-09 1
UNIPROTKB|Q9KT00 - symbol:dusC "tRNA-dihydrouridine synth... 167 1.3e-09 1
TIGR_CMR|VC_1105 - symbol:VC_1105 "conserved hypothetical... 167 1.3e-09 1
SGD|S000004545 - symbol:DUS1 "Dihydrouridine synthase" sp... 166 3.5e-09 1
UNIPROTKB|J3QLD5 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 150 3.8e-09 1
FB|FBgn0031238 - symbol:CG3645 species:7227 "Drosophila m... 167 3.9e-09 1
UNIPROTKB|D4A0T1 - symbol:Dus4l "Protein Dus4l" species:1... 162 4.9e-09 1
RGD|1311445 - symbol:Dus4l "dihydrouridine synthase 4-lik... 162 5.0e-09 1
UNIPROTKB|Q9KUX9 - symbol:dusA "tRNA-dihydrouridine synth... 161 6.7e-09 1
TIGR_CMR|VC_0379 - symbol:VC_0379 "TIM-barrel protein, yj... 161 6.7e-09 1
WB|WBGene00016674 - symbol:C45G9.2 species:6239 "Caenorha... 159 6.9e-09 1
MGI|MGI:1919166 - symbol:Dus4l "dihydrouridine synthase 4... 160 8.5e-09 1
GENEDB_PFALCIPARUM|PFI0920c - symbol:PFI0920c "Dihydrouri... 163 1.3e-08 1
UNIPROTKB|Q8I2W5 - symbol:PFI0920c "Dihydrouridine syntha... 163 1.3e-08 1
UNIPROTKB|J3QLE4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 157 1.6e-08 1
UNIPROTKB|I3LP14 - symbol:DUS4L "Uncharacterized protein"... 151 2.4e-08 1
UNIPROTKB|Q884G7 - symbol:dusA "tRNA-dihydrouridine synth... 156 2.6e-08 1
UNIPROTKB|Q6P1R4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 157 4.3e-08 1
UNIPROTKB|E2R9L8 - symbol:DUS1L "Uncharacterized protein"... 156 5.6e-08 1
UNIPROTKB|A6QPA8 - symbol:DUS4L "DUS4L protein" species:9... 147 7.6e-08 1
UNIPROTKB|J9NYR0 - symbol:DUS1L "Uncharacterized protein"... 156 7.9e-08 1
RGD|708389 - symbol:Pp3111 "PP3111 protein" species:10116... 153 1.0e-07 1
MGI|MGI:1915980 - symbol:Dus1l "dihydrouridine synthase 1... 153 1.2e-07 1
WARNING: Descriptions of 22 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-040426-1260 [details] [associations]
symbol:dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
ZFIN:ZDB-GENE-040426-1260 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOGENOM:HOG000240610
HOVERGEN:HBG062413 EMBL:BC058066 IPI:IPI00486931 RefSeq:NP_956968.1
UniGene:Dr.81366 ProteinModelPortal:Q6PEH0 STRING:Q6PEH0
GeneID:393647 KEGG:dre:393647 InParanoid:Q6PEH0 NextBio:20814655
ArrayExpress:Q6PEH0 Uniprot:Q6PEH0
Length = 660
Score = 1242 (442.3 bits), Expect = 6.8e-132, Sum P(2) = 6.8e-132
Identities = 241/429 (56%), Positives = 305/429 (71%)
Query: 112 EENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRN-----NTADTQPAAKIDDIL 166
E++ D+ + EN N S ++ +E+ ++N N +TQ I I
Sbjct: 236 EQSKNTEDQTQTNNQRENA-NIQSKNTEDQRQSVEDPSKNGSDSANRRETQ-VPPIKTIG 293
Query: 167 PETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL 225
P TD + K EKK +DFR+KLYLAPLTT GNLPFRRVCK GAD+TCGEMAMCTNLL
Sbjct: 294 PITDADIIKLRPCEKKQVDFRDKLYLAPLTTCGNLPFRRVCKRFGADITCGEMAMCTNLL 353
Query: 226 QGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN 285
QGQASEWALL+RH+SEDLFGVQ+ G +PDT+ R EL++Q VDF+DIN GCPID+V
Sbjct: 354 QGQASEWALLKRHASEDLFGVQLEGCFPDTMTRCAELLNQNIDVDFVDINSGCPIDLVYK 413
Query: 286 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 345
KG G L+T+ + + I+ + +D P+T+K+RTG + N LI ++ WG S +T
Sbjct: 414 KGGGCGLMTRTSKFEQIVRGMNSVLDVPLTVKIRTGVQQNSNIAHKLIPEMKKWGVSLIT 473
Query: 346 VHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405
+HGR+R+QRY+KLADWDYI CA+ A+ + + GNGDI SY D K + ++ M+A
Sbjct: 474 LHGRSREQRYTKLADWDYINTCAQLAAP-VPLFGNGDILSYEDAMKARET--GVSGIMVA 530
Query: 406 RGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLS 465
RGALIKPW+FTEIKE RHWDI+S ERL+I++DF FGLEHWGSD +GVE TR+FLLEWLS
Sbjct: 531 RGALIKPWLFTEIKESRHWDISSTERLDILRDFTHFGLEHWGSDTQGVEKTRNFLLEWLS 590
Query: 466 YTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTF 525
+ CRYIPVGLL+ +PQR+N RPP Y GRD LETLMAS DWI+ISEMLLG VP F+F
Sbjct: 591 FLCRYIPVGLLERVPQRINERPPFYMGRDYLETLMASQHVDDWIQISEMLLGPVPKNFSF 650
Query: 526 APKHKSNAY 534
PKHK+NAY
Sbjct: 651 LPKHKANAY 659
Score = 72 (30.4 bits), Expect = 6.8e-132, Sum P(2) = 6.8e-132
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 6 RFSGTHRDVVDVAGSTNT-LRKSSE-----VNGLNKDVQKLLWKNKMKFPKADAKLKSL 58
R++ H D+ NT L ++S N L+K++QK L K + +FP ADA LKS+
Sbjct: 146 RYAKAHTSA-DLKNMVNTELYRASAGRENTTNLLDKELQKRLRKKQQRFPGADAFLKSI 203
>UNIPROTKB|Q96G46 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AC011499 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
EMBL:AK023958 EMBL:BC004549 EMBL:BC008362 EMBL:BC009973
EMBL:AL365411 IPI:IPI00186125 IPI:IPI00640947 IPI:IPI00784107
RefSeq:NP_001155091.1 RefSeq:NP_064560.2 UniGene:Hs.284297
ProteinModelPortal:Q96G46 SMR:Q96G46 IntAct:Q96G46 STRING:Q96G46
PhosphoSite:Q96G46 DMDM:110808212 PaxDb:Q96G46 PRIDE:Q96G46
DNASU:56931 Ensembl:ENST00000309061 Ensembl:ENST00000320699
GeneID:56931 KEGG:hsa:56931 UCSC:uc002mdc.3 UCSC:uc002mdd.3
CTD:56931 GeneCards:GC19M005737 HGNC:HGNC:26920 HPA:HPA041854
HPA:HPA041944 neXtProt:NX_Q96G46 PharmGKB:PA142671938
HOGENOM:HOG000240610 HOVERGEN:HBG062413 InParanoid:Q96G46
OMA:MSEWALL OrthoDB:EOG4K6G43 GenomeRNAi:56931 NextBio:62471
ArrayExpress:Q96G46 Bgee:Q96G46 CleanEx:HS_DUS3L
Genevestigator:Q96G46 GermOnline:ENSG00000141994 Uniprot:Q96G46
Length = 650
Score = 1200 (427.5 bits), Expect = 4.3e-128, Sum P(2) = 4.3e-128
Identities = 222/380 (58%), Positives = 280/380 (73%)
Query: 156 TQPAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVT 214
T P++ + P TD + + EKK +D R KLYLAPLTT GNLPFRR+CK GADVT
Sbjct: 273 TPPSSPVRTCGPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVT 332
Query: 215 CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDI 274
CGEMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+ + VDF+DI
Sbjct: 333 CGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDI 392
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 334
N+GCPID+V KG G L+ + + + I+ + +D P+T+K+RTG E N L+
Sbjct: 393 NVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLP 452
Query: 335 DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 394
++ WG + VT+HGR+R+QRY+KLADW YI +C + AS + + GNGDI S+ D N+
Sbjct: 453 ELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAASP-MPLFGNGDILSFEDANRAMQ 511
Query: 395 DCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVE 454
+ MIARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE
Sbjct: 512 T--GVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVE 569
Query: 455 TTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEM 514
TR FLLEWLS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEM
Sbjct: 570 KTRRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEM 629
Query: 515 LLGKVPDGFTFAPKHKSNAY 534
LLG VP F F PKHK+NAY
Sbjct: 630 LLGPVPPSFAFLPKHKANAY 649
Score = 78 (32.5 bits), Expect = 4.3e-128, Sum P(2) = 4.3e-128
Identities = 34/127 (26%), Positives = 54/127 (42%)
Query: 6 RFSGTH-----RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGL 60
RF+G H +++V + + S NGL+K +Q+ L K +++F +A+ L+
Sbjct: 178 RFAGAHLRPEGQNLVQEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQ 237
Query: 61 LGPAKSKMKVMEDKEQEGVVDSNNSHATN-GNGCMKGTGDSVDESECSPCVPEENNIVND 119
GP + V E EG N A G T S C P E+ +V
Sbjct: 238 -GPTPAAA-VPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDED--VVRL 293
Query: 120 RPLKKAK 126
RP +K +
Sbjct: 294 RPCEKKR 300
>UNIPROTKB|F1PS34 [details] [associations]
symbol:LOC100856098 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270 GO:GO:0003676
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AAEX03012510
RefSeq:XP_003639789.1 Ensembl:ENSCAFT00000029778 GeneID:100856098
KEGG:cfa:100856098 Uniprot:F1PS34
Length = 645
Score = 1201 (427.8 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 224/369 (60%), Positives = 276/369 (74%)
Query: 167 PETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL 225
P TD + + EK+ +D KLYLAPLTT GNLPFRR+CK GADVTCGEMA+CTNLL
Sbjct: 279 PLTDEDIVRLRPCEKRKLDIGGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLL 338
Query: 226 QGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN 285
QGQ SEWALLRRH ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V
Sbjct: 339 QGQTSEWALLRRHPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVYK 398
Query: 286 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 345
KG G L+ + + + I+ + +D P+T+K+RTG E N L+ ++ WGA+ VT
Sbjct: 399 KGGGCALMNRSAKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELREWGAALVT 458
Query: 346 VHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405
+HGR+R+QRY+KLADW YI QC AS + + GNGDI SY D N+ +A MIA
Sbjct: 459 LHGRSREQRYTKLADWQYIEQCVTAASP-MPLFGNGDILSYEDANRAMQT--GVAGVMIA 515
Query: 406 RGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLS 465
RGAL+KPW+FTEIKEQRHWDI+S ERL I++DF R+GLEHWGSD +GVE TR FLLEWLS
Sbjct: 516 RGALLKPWLFTEIKEQRHWDISSSERLAILQDFTRYGLEHWGSDTQGVEKTRRFLLEWLS 575
Query: 466 YTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTF 525
+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEMLLG VP F F
Sbjct: 576 FLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPNFVF 635
Query: 526 APKHKSNAY 534
PKHK+NAY
Sbjct: 636 LPKHKANAY 644
Score = 72 (30.4 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 24/98 (24%), Positives = 42/98 (42%)
Query: 31 NGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNG 90
NGL++ +Q+ L K +++F +A+ L+ L GP E G + +
Sbjct: 199 NGLDRALQQQLRKRQVRFERAEQALRQLSR-GPGTGPSPAAATPEVSGTEGAPGQDGGDT 257
Query: 91 NGCMKGTG-DSVDESECSPCVP-EENNIVNDRPLKKAK 126
+ G ++ S C P + +IV RP +K K
Sbjct: 258 QQALLEPGAGALASSSVQTCGPLTDEDIVRLRPCEKRK 295
>UNIPROTKB|F1NGP4 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AADN02072212 IPI:IPI00581852
Ensembl:ENSGALT00000002780 Uniprot:F1NGP4
Length = 630
Score = 1200 (427.5 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 221/367 (60%), Positives = 281/367 (76%)
Query: 169 TDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG 227
TD + K S EKK ++ + KLYLAPLTT GNLPFRR+CK GADVTCGEMA+CTNLLQG
Sbjct: 266 TDEDIVKLRSCEKKKLEIQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQG 325
Query: 228 QASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 287
Q+SEWALL+RH +ED+FGVQ+ GA+PDT+ + EL++Q VDF+DIN+GCPID+V KG
Sbjct: 326 QSSEWALLKRHHTEDIFGVQLEGAFPDTMTKCAELLNQTIDVDFVDINVGCPIDLVYKKG 385
Query: 288 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347
G L+T+ + + I+ + +D P+T+K+RTG E N +I I WGAS VT+H
Sbjct: 386 GGCALMTRSNKFEQIVRGMNSVLDVPLTVKIRTGVQEKMNVAHKIIPKIREWGASMVTLH 445
Query: 348 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407
GR+R+QRY+++ADWDYI +CA+ AS + + GNGDI SY D N+ ++ MIARG
Sbjct: 446 GRSREQRYTRVADWDYIAECAKIASP-MPLFGNGDILSYEDANQAMQT--GVSGIMIARG 502
Query: 408 ALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYT 467
ALIKPW+FTEIKEQRHWDI+S ER +I++DF +GLEHWGSD +GVE TR FLLEWLS+
Sbjct: 503 ALIKPWLFTEIKEQRHWDISSSERFDILRDFTNYGLEHWGSDTQGVEKTRKFLLEWLSFL 562
Query: 468 CRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAP 527
CRYIPVGLL+ +PQ++N RPP Y GRD LETLMAS + DWI+ISE+LLG VP FTF P
Sbjct: 563 CRYIPVGLLEHLPQKINERPPYYIGRDYLETLMASQNVDDWIKISELLLGPVPTNFTFLP 622
Query: 528 KHKSNAY 534
KHK+N+Y
Sbjct: 623 KHKANSY 629
Score = 71 (30.1 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 11 HRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSL 58
H++VV+ + KS N L+KD+Q L K + F KAD L+SL
Sbjct: 185 HQNVVNTELAKQWEGKSLVRNSLSKDLQHQLRKKEFTFKKADEYLRSL 232
Score = 37 (18.1 bits), Expect = 9.2e-124, Sum P(2) = 9.2e-124
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 65 KSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPE 112
+ + K ED+E+E V CMK + ++S P V +
Sbjct: 81 EDREKEPEDREKEPVERKRARGQNKSRPCMKP--NHYEKSRLCPSVTQ 126
>UNIPROTKB|E1BGZ1 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 EMBL:DAAA02019576
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
OMA:MSEWALL GeneTree:ENSGT00550000075134 IPI:IPI00715519
RefSeq:NP_001193247.1 UniGene:Bt.15641 ProteinModelPortal:E1BGZ1
Ensembl:ENSBTAT00000015715 GeneID:508812 KEGG:bta:508812
NextBio:20868690 Uniprot:E1BGZ1
Length = 650
Score = 1196 (426.1 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 222/378 (58%), Positives = 279/378 (73%)
Query: 158 PAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCG 216
P+ + P TD + + EK+ +D KLYLAPLTT GNLPFRR+CK GADVTCG
Sbjct: 275 PSGPLRTCGPLTDEDVVRLRPHEKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCG 334
Query: 217 EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINM 276
EMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+
Sbjct: 335 EMAVCTNLLQGQTSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINV 394
Query: 277 GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 336
GCPID+V KG G L+ + + + I+ + +D P+T+K+RTG E N L+ D+
Sbjct: 395 GCPIDLVFKKGGGCALMNRLAKFQQIVRGMNQVLDVPLTVKLRTGVQERVNLAHRLLPDL 454
Query: 337 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 396
WGA+ VT+HGR+R+QRY+KLADW YI QC A+ + + GNGD+ SY D N+
Sbjct: 455 RDWGAALVTLHGRSREQRYTKLADWQYIEQCVA-AARPMPLFGNGDVLSYEDANRALQT- 512
Query: 397 PELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETT 456
+A MIARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE T
Sbjct: 513 -GVAGVMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVEKT 571
Query: 457 RHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLL 516
R FLLEWLS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEMLL
Sbjct: 572 RRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLL 631
Query: 517 GKVPDGFTFAPKHKSNAY 534
G VP F F PKHK+NAY
Sbjct: 632 GPVPPNFVFLPKHKANAY 649
Score = 75 (31.5 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 6 RFSGTHRDVVDVAGSTNTLRKSSEV-NGLNKDVQKLLWKNKMKFPKADAKLKSLG---LL 61
RF+G H L ++ V NGL+K +Q+ L K K+ F +A+ L+ L L
Sbjct: 178 RFAGAHLGPEGQNLVREGLVQAPPVRNGLDKALQQQLRKRKIHFKRAEQALRQLSRGPLP 237
Query: 62 GPAKSKMKVMEDKEQEGVVDSNN 84
GP + V E +E EG +N
Sbjct: 238 GPTP-EATVPEGREAEGAPGQDN 259
>UNIPROTKB|F1SBU5 [details] [associations]
symbol:LOC100513458 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:CU928983 EMBL:FP089464
RefSeq:XP_003123132.1 RefSeq:XP_003123140.1 UniGene:Ssc.48250
UniGene:Ssc.82799 Ensembl:ENSSSCT00000014768
Ensembl:ENSSSCT00000014775 GeneID:100512091 GeneID:100513458
KEGG:ssc:100512091 KEGG:ssc:100513458 Uniprot:F1SBU5
Length = 652
Score = 1197 (426.4 bits), Expect = 3.0e-127, Sum P(2) = 3.0e-127
Identities = 223/378 (58%), Positives = 279/378 (73%)
Query: 158 PAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCG 216
P+ + P TD + + EK+ +D KLYLAPLTT GNLPFRR+CK GADVTCG
Sbjct: 277 PSGPLRTCGPLTDEDVVRLRPCEKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCG 336
Query: 217 EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINM 276
EMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+
Sbjct: 337 EMAVCTNLLQGQTSEWALLKRHPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINV 396
Query: 277 GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 336
GCPID+V KG G L+ + + + I+ + +D P+T+K+RTG E N L+ ++
Sbjct: 397 GCPIDLVYKKGGGCALMNRSAKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPEL 456
Query: 337 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 396
WGA+ VT+HGR+R+QRY+KLADW YI QC AS + + GNGDI SY D N+
Sbjct: 457 RDWGAALVTLHGRSREQRYTKLADWQYIEQCVTAASP-MPLFGNGDILSYEDANRAMKT- 514
Query: 397 PELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETT 456
+A MIARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE T
Sbjct: 515 -GVAGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVEKT 573
Query: 457 RHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLL 516
R FLLEWLS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEMLL
Sbjct: 574 RRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYMGRDYLETLMASQKAADWIRISEMLL 633
Query: 517 GKVPDGFTFAPKHKSNAY 534
G VP F F PKHK+NAY
Sbjct: 634 GPVPPTFVFLPKHKANAY 651
Score = 73 (30.8 bits), Expect = 3.0e-127, Sum P(2) = 3.0e-127
Identities = 31/125 (24%), Positives = 54/125 (43%)
Query: 6 RFSGTHRDVVDVAGSTNTLRKSSEV-NGLNKDVQKLLWKNKMKFPKADAKLKSLG---LL 61
RF+G H L ++ + NGL+K +Q+ L K K+ F +++ L+ L L
Sbjct: 181 RFAGAHLGPEGQNLVQEGLVQAPNIRNGLDKALQQQLRKRKVCFERSEQALRQLSKGRLP 240
Query: 62 GPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRP 121
GP + + E E +G + + A + + S C P E+ +V RP
Sbjct: 241 GPTPTAAEP-EVTEADGAPEQDGCDAQQASHGPQQAPPSGPLRTCGPLTDED--VVRLRP 297
Query: 122 LKKAK 126
+K +
Sbjct: 298 CEKRR 302
>MGI|MGI:2147092 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
MGI:MGI:2147092 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
HOGENOM:HOG000240610 HOVERGEN:HBG062413 OrthoDB:EOG4K6G43
EMBL:AY040840 EMBL:AK157702 EMBL:BC052481 IPI:IPI00129184
IPI:IPI00776080 RefSeq:NP_659107.2 UniGene:Mm.293973
ProteinModelPortal:Q91XI1 SMR:Q91XI1 STRING:Q91XI1
PhosphoSite:Q91XI1 PaxDb:Q91XI1 PRIDE:Q91XI1
Ensembl:ENSMUST00000007747 GeneID:224907 KEGG:mmu:224907
UCSC:uc008ddd.2 GeneTree:ENSGT00550000075134 InParanoid:Q91XI1
NextBio:377458 Bgee:Q91XI1 CleanEx:MM_DUS3L Genevestigator:Q91XI1
GermOnline:ENSMUSG00000007603 Uniprot:Q91XI1
Length = 637
Score = 1195 (425.7 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 223/382 (58%), Positives = 282/382 (73%)
Query: 154 ADTQPAAKIDDILPETDGS-LKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGAD 212
A T ++ + P TD ++ EKK +D KLYLAPLTT GNLPFRR+CK GAD
Sbjct: 258 AGTPQSSPVPTCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGAD 317
Query: 213 VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFI 272
VTCGEMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+++ VDF+
Sbjct: 318 VTCGEMAVCTNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFV 377
Query: 273 DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 332
DIN+GCPID+V KG G L+ + + + I+ +G +D P+T+K+RTG E + L
Sbjct: 378 DINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGVNGVLDVPLTVKMRTGVQERVSLAHRL 437
Query: 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392
+ ++ WG + VT+HGR+R+QRY++LADW YI QCA+ AS + + GNGDI S+ D N
Sbjct: 438 LPELRDWGVALVTLHGRSREQRYTRLADWPYIEQCAKVASP-MPLFGNGDILSFEDANCA 496
Query: 393 KSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKG 452
+A M+ARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +G
Sbjct: 497 MQT--GVAGIMVARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQG 554
Query: 453 VETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRIS 512
VE TR FLLEWLS+ CRY+PVGLL+ PQR+N RPP Y GRD LETLMAS AADWIRIS
Sbjct: 555 VERTRRFLLEWLSFLCRYVPVGLLERPPQRINERPPYYLGRDYLETLMASQQAADWIRIS 614
Query: 513 EMLLGKVPDGFTFAPKHKSNAY 534
EMLLG VP GF F PKHK+NAY
Sbjct: 615 EMLLGPVPPGFVFLPKHKANAY 636
Score = 66 (28.3 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 30/126 (23%), Positives = 52/126 (41%)
Query: 6 RFSGTH-----RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGL 60
RF+G H +++V + S NGL++ +Q+ L K ++ F +A+ ++L
Sbjct: 167 RFAGAHLGPEGQNLVQEEVVARCAQLPSVRNGLDRALQQQLRKRQVCFERAE---QALNR 223
Query: 61 LGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDR 120
L + V E N+ HA GT S C P E+ ++ R
Sbjct: 224 LTQSPMPTVVPETTVAMATPKQNSCHAQLDTVGGAGTPQSSPVPTCGPLTDED--VIRLR 281
Query: 121 PLKKAK 126
P +K +
Sbjct: 282 PCEKKR 287
>RGD|1563228 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
RGD:1563228 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOVERGEN:HBG062413
EMBL:BC105780 IPI:IPI00373725 RefSeq:NP_001030095.1
UniGene:Rn.42187 ProteinModelPortal:Q3KRC5 PhosphoSite:Q3KRC5
PRIDE:Q3KRC5 GeneID:301122 KEGG:rno:301122 NextBio:648195
Genevestigator:Q3KRC5 Uniprot:Q3KRC5
Length = 640
Score = 1192 (424.7 bits), Expect = 1.9e-125, Sum P(2) = 1.9e-125
Identities = 221/369 (59%), Positives = 277/369 (75%)
Query: 167 PETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL 225
P TD + + EKK +D KLYLAPLTT GNLPFRR+CK GADVTCGEMAMCTNLL
Sbjct: 274 PLTDEDVVRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLL 333
Query: 226 QGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN 285
QGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V
Sbjct: 334 QGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYK 393
Query: 286 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 345
KG G L+ + + + I+ + +D P+T+K+RTG E + L+ ++ WG + VT
Sbjct: 394 KGGGCALMNRSAKFQQIVRGMNEVLDVPLTVKMRTGVQERVSLAHRLLPELRNWGVALVT 453
Query: 346 VHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405
+HGR+R+QRY++LADW YI QCA+ AS + + GNGDI S+ D N +A M+A
Sbjct: 454 LHGRSREQRYTRLADWPYIEQCAKVASP-MPLFGNGDILSFEDANCAMQT--GVAGIMVA 510
Query: 406 RGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLS 465
RGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE TR FLLEWLS
Sbjct: 511 RGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLS 570
Query: 466 YTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTF 525
+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEMLLG VP GF F
Sbjct: 571 FLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPGFVF 630
Query: 526 APKHKSNAY 534
PKHK+NAY
Sbjct: 631 LPKHKANAY 639
Score = 61 (26.5 bits), Expect = 1.9e-125, Sum P(2) = 1.9e-125
Identities = 32/131 (24%), Positives = 56/131 (42%)
Query: 6 RFSGTH-----RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGL 60
RF+G H +++V + S NGL++ +Q+ L K ++ F +A+ L L
Sbjct: 170 RFAGAHLGPEGQNLVQEEVVARCAQLPSVRNGLDRALQQQLRKRQVCFERAEQALSHL-T 228
Query: 61 LGPA-----KSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENN 115
GP +S + + K V +N G+G +G+ C P E+
Sbjct: 229 QGPMPTIAPESTVATLTPKHSSCHVQLDN---VGGDGARQGS----PVPTCGPLTDED-- 279
Query: 116 IVNDRPLKKAK 126
+V RP +K +
Sbjct: 280 VVRLRPCEKKR 290
>FB|FBgn0032819 [details] [associations]
symbol:CG10463 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270
GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 EMBL:AY119278 ProteinModelPortal:Q8MRT5
SMR:Q8MRT5 STRING:Q8MRT5 PaxDb:Q8MRT5 PRIDE:Q8MRT5
FlyBase:FBgn0032819 InParanoid:Q8MRT5 OrthoDB:EOG49CNPV
ArrayExpress:Q8MRT5 Bgee:Q8MRT5 Uniprot:Q8MRT5
Length = 604
Score = 1064 (379.6 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 199/390 (51%), Positives = 271/390 (69%)
Query: 146 EEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRV 205
E+ T + + T IDD D H K +DFREKL L+PLTT+GNLPFRR+
Sbjct: 222 EKQTDSKSKPTATGCAIDDSAIGRDAD---H---KPAVDFREKLVLSPLTTLGNLPFRRI 275
Query: 206 CKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQ 265
CK GAD+TCGEMA LL+G EWAL +RH SED+FGVQ+CG P+ L + ++I +
Sbjct: 276 CKEFGADITCGEMACAQPLLKGMGQEWALTKRHQSEDVFGVQLCGNNPNMLNQAAQVIHE 335
Query: 266 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFE 324
VDFID+N+GCPID++ +G GS L+ + ++ + + + D+ P T+K+RTG +
Sbjct: 336 TAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILELTVRSCAALSDRLPFTVKMRTGIYA 395
Query: 325 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY 384
K+ L+ + WGASAVT+HGR+R+QRY+K A+W YI +CA KA + V+GNGDI
Sbjct: 396 DKSVAHELLPLVEEWGASAVTLHGRSREQRYTKHANWAYIEECAAKAKR-MPVIGNGDIL 454
Query: 385 SYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLE 444
SY D+ + ++ P ++S MI RGALIKPWIF EIKE++ W +SG+R +++ F +GLE
Sbjct: 455 SYEDYMERRTLAPHVSSVMIGRGALIKPWIFQEIKEKQAWSPSSGQRYEMLQKFCNYGLE 514
Query: 445 HWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDS 504
HWGSD KGVETTR FLLEW S+ RYIP L PQ++N RP Y GRD++ETLM+S +
Sbjct: 515 HWGSDTKGVETTRRFLLEWQSFLYRYIPEALQTAPPQKINARPQKYRGRDEMETLMSSGN 574
Query: 505 AADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
AADW+++SE LLG+VP+GFTF PKHK+NA+
Sbjct: 575 AADWVKLSESLLGRVPEGFTFVPKHKANAF 604
Score = 56 (24.8 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 23/97 (23%), Positives = 42/97 (43%)
Query: 31 NGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQ--EGVVDSNNSHAT 88
NG++ ++Q L K++ F ++ +K L A+ M+ E ++ E + S T
Sbjct: 157 NGVSSELQVRLRKHEYDFSRSKELIKMAEKLRDARKLMEQQEKEKNLSEETGEKQPSETT 216
Query: 89 NGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKA 125
K T DS + + C +++ I D K A
Sbjct: 217 EILDAEKQT-DSKSKPTATGCAIDDSAIGRDADHKPA 252
>DICTYBASE|DDB_G0292686 [details] [associations]
symbol:dus3l "tRNA-dihydrouridine synthase 3-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
SMART:SM00356 dictyBase:DDB_G0292686 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:XP_629571.1
ProteinModelPortal:Q54CU9 STRING:Q54CU9 EnsemblProtists:DDB0238072
GeneID:8628832 KEGG:ddi:DDB_G0292686 KO:K05544 OMA:WGASAIT
ProtClustDB:CLSZ2495295 Uniprot:Q54CU9
Length = 671
Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
Identities = 225/506 (44%), Positives = 307/506 (60%)
Query: 30 VNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATN 89
+N ++ ++Q L N FPK++ G+ V + K + + NN+ +
Sbjct: 183 LNEVSNEIQIQLKTNNYPFPKSEIYFNENGI--------SVRQIKGRNNNNNKNNNKQND 234
Query: 90 GNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDT 149
D D+ + EN +E E E E
Sbjct: 235 NKRKENEKDDDDDKLNKKIKLENENTTTTTTTTTTTTTETTEKTEKTEKTEKTETTETK- 293
Query: 150 RNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVL 209
+ + +ID + P LK + EKK I+F +L LAPLTTVGNLPFRR+CK L
Sbjct: 294 KEEFKQSNENTEIDIMTP-----LKAN--EKKRINFENQLILAPLTTVGNLPFRRICKRL 346
Query: 210 GADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTV 269
GAD+T GEMA+ T LL+G SE ALL+RH ED FGVQICG+Y D + E I+ +
Sbjct: 347 GADITIGEMALTTKLLEGTKSELALLKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDA 406
Query: 270 DFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRI 329
DF+DIN GCPID+V N GAG+ L+ +P +++ ++ S ++ P TIK+R G E
Sbjct: 407 DFVDINSGCPIDLVCNMGAGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTA 466
Query: 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDW 389
LI +G WGA AVT+HGR+R QRYS+LA+WDY+ QC+ +S + ++GNGDIY+Y D
Sbjct: 467 HKLIPSLGEWGACAVTLHGRSRAQRYSRLANWDYVKQCSEVSS--IPLIGNGDIYNYQDV 524
Query: 390 NKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSD 449
+ D +++S MIARGALIKPWIFTEIKE+R WDI++ ERL+ ++DFA +GL+HWGSD
Sbjct: 525 -VNIYDSSKVSSIMIARGALIKPWIFTEIKEKREWDISASERLDFIRDFANYGLDHWGSD 583
Query: 450 KKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWI 509
+ GV+ TR FLL WLS++ RYIPVGLLD + +N RPPAY GR DLETL+AS DWI
Sbjct: 584 RIGVDNTRKFLLNWLSFSHRYIPVGLLDKV-HYMNERPPAYFGRSDLETLLASTQVKDWI 642
Query: 510 RISEMLLGKVPDGFTFAPKHKSNAYD 535
+I+EM LG V ++F PKH SN+Y+
Sbjct: 643 KITEMFLGPVTSDYSFVPKHNSNSYE 668
>WB|WBGene00021377 [details] [associations]
symbol:Y37E11B.5 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
HOGENOM:HOG000240610 OMA:MSEWALL GeneTree:ENSGT00550000075134
EMBL:FO080119 PIR:T33894 RefSeq:NP_500379.1
ProteinModelPortal:Q9TYN2 SMR:Q9TYN2 STRING:Q9TYN2 PaxDb:Q9TYN2
EnsemblMetazoa:Y37E11B.5.1 EnsemblMetazoa:Y37E11B.5.2 GeneID:177120
KEGG:cel:CELE_Y37E11B.5 UCSC:Y37E11B.5 CTD:177120
WormBase:Y37E11B.5 InParanoid:Q9TYN2 NextBio:895428 Uniprot:Q9TYN2
Length = 554
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 189/417 (45%), Positives = 272/417 (65%)
Query: 128 ENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKID--DILPETDGSLKTHSREKKLIDF 185
E NC S++ + E D T A K + ++L + ++ REKK ++
Sbjct: 141 EPTTNCHSMKIQVALRKREYDFEK-TEKALEAIKNENFEVLELSLSTVGAMCREKKPLNM 199
Query: 186 RE---KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 242
K YLAPLTTVGNLPFRR+C GAD+TCGEMA+ T++L G ASE++LL+RH E
Sbjct: 200 GSLDGKKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKRHPCEK 259
Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302
+FGVQ+ G + DT+A+ +++ + VDFIDINMGCPID+V KG G L ++P ++ +
Sbjct: 260 IFGVQLAGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALPSRPQKLFEV 319
Query: 303 IEATSGTVDK--PITIKVRTGYFEGKNRIDSLIADIG--TWGA-SAVTVHGRTRQQRYSK 357
+ AT + P+T+K+RTG EG + + + +W +T H R+++QRY++
Sbjct: 320 LAATKSVLGGCCPLTVKIRTGMKEGVLKAPEYVEHMKKHSWHTPDLITFHPRSKEQRYTR 379
Query: 358 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417
LA+WD+ + ++A+ + + GDI S+ D+ + P + MI RGALIKPWIFTE
Sbjct: 380 LANWDFTFP-VQEATKPVPLWVCGDILSWEDYYERLEQYP-VNGIMIGRGALIKPWIFTE 437
Query: 418 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 477
I E+R WDI+S ER +++K F +GL+HWGSD GVE TR FLLE+LS+ CRYIPVG+L+
Sbjct: 438 IDERRTWDISSTERFDLLKKFVDYGLDHWGSDDAGVERTRRFLLEFLSFQCRYIPVGILE 497
Query: 478 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
+PQR+N RPP + GR++LETL++S A DWI IS LLG P+GF F PKHK+++Y
Sbjct: 498 RLPQRINDRPPRFCGRNELETLLSSQKADDWIEISTRLLGPTPEGFQFIPKHKASSY 554
>SGD|S000004393 [details] [associations]
symbol:DUS3 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS;IMP] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002943 "tRNA dihydrouridine synthesis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 SGD:S000004393 GO:GO:0005634 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:BK006945 EMBL:U19729 EMBL:Z18944 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 KO:K05544 HOGENOM:HOG000240610
GeneTree:ENSGT00550000075134 OrthoDB:EOG4M950K OMA:PWIFEEV
PIR:S55957 RefSeq:NP_013505.4 RefSeq:NP_013508.3
ProteinModelPortal:Q06053 SMR:Q06053 DIP:DIP-4469N MINT:MINT-473573
STRING:Q06053 PaxDb:Q06053 PeptideAtlas:Q06053 EnsemblFungi:YLR401C
GeneID:851117 GeneID:851120 KEGG:sce:YLR401C KEGG:sce:YLR404W
BioCyc:MetaCyc:MONOMER-16678 NextBio:967836 Genevestigator:Q06053
GermOnline:YLR401C Uniprot:Q06053
Length = 668
Score = 451 (163.8 bits), Expect = 4.0e-86, Sum P(3) = 4.0e-86
Identities = 76/166 (45%), Positives = 118/166 (71%)
Query: 369 RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITS 428
R + + +Q +GNGD+ ++ DW ++ + + S M+ARGALIKPWIF E++ Q++ D TS
Sbjct: 498 RDSKNRIQFVGNGDVNNFEDWYRYLNGNENIDSVMVARGALIKPWIFEEVESQQYLDKTS 557
Query: 429 GERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPP 488
ERL+I++D+A+F +EHWG+D+ G+ R F E++S+ RY+P+G+ + P +LN RPP
Sbjct: 558 TERLDILRDYAQFSMEHWGTDEYGISQCRRFFCEFMSFFHRYVPMGICERYPVKLNERPP 617
Query: 489 AYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
+ GRD+LETLM S DWI++S++ GK + F F PKHKS++Y
Sbjct: 618 NWCGRDELETLMGSTDVNDWIKLSDLFFGKTDENFVFVPKHKSSSY 663
Score = 408 (148.7 bits), Expect = 4.0e-86, Sum P(3) = 4.0e-86
Identities = 88/196 (44%), Positives = 125/196 (63%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
++EKK +D K ++PLTTVGNLP+RR+ + LGADVT EMA+ L+QG SEWAL +
Sbjct: 283 AQEKKPLDLYHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTNSEWALPK 342
Query: 237 RHSSE-DLFGVQICGAYPDTLARTVE-LIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLT 294
H+SE FGVQ+ + A+ E L + + I++N GCPID++ +G+GS LL
Sbjct: 343 AHTSEFPGFGVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYRQGSGSALLD 402
Query: 295 KPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHGRTRQ 352
P RM + A + + D PIT+K+RTG EG + L+ + +A+T+HGR+RQ
Sbjct: 403 NPARMIRCLNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVKRLVNETDVAAITLHGRSRQ 462
Query: 353 QRYSKLADWDYIYQCA 368
QRY+K ADWDY+ Q A
Sbjct: 463 QRYTKSADWDYVSQVA 478
Score = 41 (19.5 bits), Expect = 4.0e-86, Sum P(3) = 4.0e-86
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 143 SVLEEDTRN-NTADTQPAAKIDDILPETDGSLKTHSREKKLI 183
S++ +D DT P+ I I PE LK + +K I
Sbjct: 9 SIVGDDNSTVKRQDTSPSKGIAHIKPEYIVPLKQNENQKVAI 50
>ASPGD|ASPL0000051905 [details] [associations]
symbol:AN0818 species:162425 "Emericella nidulans"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:BN001308 GO:GO:0050660 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:AACD01000013 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 HOGENOM:HOG000240610
RefSeq:XP_658422.1 ProteinModelPortal:Q5BF62 STRING:Q5BF62
EnsemblFungi:CADANIAT00001842 GeneID:2876594 KEGG:ani:AN0818.2
OMA:GTTRRFL OrthoDB:EOG4M950K Uniprot:Q5BF62
Length = 714
Score = 471 (170.9 bits), Expect = 1.4e-83, Sum P(4) = 1.4e-83
Identities = 84/158 (53%), Positives = 115/158 (72%)
Query: 378 LGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKD 437
LGNGD YS++D+ H + ++ S M+ RGALIKPW+F EI+ ++ D ++ ERL ++
Sbjct: 555 LGNGDCYSHVDYEDHIKNA-KVDSVMVGRGALIKPWLFEEIQAGQYLDKSASERLAYVEK 613
Query: 438 FARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLE 497
FAR+G+E WGSD+ G+ TR FLLEWLS+ CRY+P+GLL+ +P ++N RPP + GR+D+E
Sbjct: 614 FARYGMETWGSDEYGIGITRRFLLEWLSFACRYVPIGLLEYLPPKINDRPPYWRGRNDME 673
Query: 498 TLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
TLM S DWI+ISEM LG F F PKHKSN+YD
Sbjct: 674 TLMGSHDYRDWIKISEMFLGPAHKDFKFEPKHKSNSYD 711
Score = 210 (79.0 bits), Expect = 1.4e-83, Sum P(4) = 1.4e-83
Identities = 50/145 (34%), Positives = 84/145 (57%)
Query: 239 SSEDL-FGVQICG-AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP 296
+S+D+ FG QI G Y + T L + ID+N GCPID++ +G+GS LL P
Sbjct: 377 NSKDMKFGAQIAGNKYRWVMKATEVLSSLTPNLRVIDLNCGCPIDLLYREGSGSALLDAP 436
Query: 297 MRMKGIIEATSGTVDK-PITIKVRTGYFEG----KNRIDSLIA--------DIGTWGASA 343
+++ ++ + ++ PIT+K+RTG + + ++ LI + G G +A
Sbjct: 437 SKLEKMLRGMNAVSEQIPITVKIRTGTRDNTPNAQKLVERLILGGHEASMLNCGPSGVAA 496
Query: 344 VTVHGRTRQQRYSKLADWDYIYQCA 368
+T+HGR+RQQRY++ A+W+YI + A
Sbjct: 497 ITLHGRSRQQRYTREANWEYISETA 521
Score = 166 (63.5 bits), Expect = 1.4e-83, Sum P(4) = 1.4e-83
Identities = 36/66 (54%), Positives = 44/66 (66%)
Query: 179 EKKLIDFR-EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 237
EK+ + F E LAPLTT GNLPFRR+C LGA +T EMA+ L+QG EWAL+R
Sbjct: 296 EKRRLYFGPETPALAPLTTQGNLPFRRLCVELGAQLTYSEMALSMPLIQGHKPEWALMRA 355
Query: 238 HSSEDL 243
H +E L
Sbjct: 356 HETEAL 361
Score = 45 (20.9 bits), Expect = 1.4e-83, Sum P(4) = 1.4e-83
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 94 MKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSE 128
M+GT ++D +P + + PLKK + E
Sbjct: 1 MEGTAQNLDVEVPKQDLPNGTDSTGEPPLKKVRLE 35
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 313 PITIKVRTGYFEGKNRIDSLIA--DIGTW 339
P I R Y+ G+N +++L+ D W
Sbjct: 656 PPKINDRPPYWRGRNDMETLMGSHDYRDW 684
>CGD|CAL0005565 [details] [associations]
symbol:orf19.1565 species:5476 "Candida albicans" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 679 (244.1 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 136/286 (47%), Positives = 195/286 (68%)
Query: 269 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGYFEG 325
V +++N GCPID++ +G GS LL +P ++ I+ A+SG D P+T+K+RTG EG
Sbjct: 329 VSELNLNCGCPIDLLYKQGQGSALLDQPSKLLRILSGMNASSG--DIPVTVKIRTGIKEG 386
Query: 326 KNRIDSLIADIGTWG-ASAVTVHGRTRQQRYSKLADWDYIYQCAR--------------- 369
KN +L++ + G A+A+T+HGR+RQQRYSK ADW+YI +
Sbjct: 387 KNTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKEADWNYIAEVGTVVKNWNEQQKEDKEG 446
Query: 370 KASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSG 429
+ D + +GNGD+YS+ DW +H + + S M+ARGALIKPWIF E++ Q++ D +S
Sbjct: 447 RDRDPVYFVGNGDVYSHEDWYEHVNT-DGIDSVMVARGALIKPWIFEEVEAQQYLDKSSS 505
Query: 430 ERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPA 489
ERL+I+ FA++ +EHWGSD+ GV +R F+ E+LS+T RYIPVG+++ +P +LN RPP
Sbjct: 506 ERLDILGKFAKYAIEHWGSDEYGVGLSRRFMCEFLSFTHRYIPVGIMERLPPKLNERPPK 565
Query: 490 YSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
+ GR+DLETL+AS DWI+I+EM LGK D F F PKHKSNAY+
Sbjct: 566 WVGRNDLETLLASTDYKDWIKITEMFLGKATDDFQFTPKHKSNAYE 611
Score = 417 (151.9 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 92/192 (47%), Positives = 126/192 (65%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 238
EKK + R ++PLTTVGNLP+RR+ K LGADVT EMA+ L+QG EWAL + H
Sbjct: 237 EKKKLHLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQGHNPEWALPKAH 296
Query: 239 SSE-DLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKP 296
SE FGVQI + A+ E I + T V +++N GCPID++ +G GS LL +P
Sbjct: 297 VSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQGSALLDQP 356
Query: 297 MRMKGIIE---ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGRTRQ 352
++ I+ A+SG D P+T+K+RTG EGKN +L++ + G A+A+T+HGR+RQ
Sbjct: 357 SKLLRILSGMNASSG--DIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQ 414
Query: 353 QRYSKLADWDYI 364
QRYSK ADW+YI
Sbjct: 415 QRYSKEADWNYI 426
Score = 39 (18.8 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 13 DVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSL 58
D ++ A +TN EVN ++KD + + K K F + +K L
Sbjct: 164 DKMETAKTTNY-----EVNHIDKDQKMEMQKKKYFFKISQPVIKYL 204
>UNIPROTKB|Q5ALL3 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:237561 "Candida albicans SC5314" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 679 (244.1 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 136/286 (47%), Positives = 195/286 (68%)
Query: 269 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGYFEG 325
V +++N GCPID++ +G GS LL +P ++ I+ A+SG D P+T+K+RTG EG
Sbjct: 329 VSELNLNCGCPIDLLYKQGQGSALLDQPSKLLRILSGMNASSG--DIPVTVKIRTGIKEG 386
Query: 326 KNRIDSLIADIGTWG-ASAVTVHGRTRQQRYSKLADWDYIYQCAR--------------- 369
KN +L++ + G A+A+T+HGR+RQQRYSK ADW+YI +
Sbjct: 387 KNTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKEADWNYIAEVGTVVKNWNEQQKEDKEG 446
Query: 370 KASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSG 429
+ D + +GNGD+YS+ DW +H + + S M+ARGALIKPWIF E++ Q++ D +S
Sbjct: 447 RDRDPVYFVGNGDVYSHEDWYEHVNT-DGIDSVMVARGALIKPWIFEEVEAQQYLDKSSS 505
Query: 430 ERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPA 489
ERL+I+ FA++ +EHWGSD+ GV +R F+ E+LS+T RYIPVG+++ +P +LN RPP
Sbjct: 506 ERLDILGKFAKYAIEHWGSDEYGVGLSRRFMCEFLSFTHRYIPVGIMERLPPKLNERPPK 565
Query: 490 YSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
+ GR+DLETL+AS DWI+I+EM LGK D F F PKHKSNAY+
Sbjct: 566 WVGRNDLETLLASTDYKDWIKITEMFLGKATDDFQFTPKHKSNAYE 611
Score = 417 (151.9 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 92/192 (47%), Positives = 126/192 (65%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 238
EKK + R ++PLTTVGNLP+RR+ K LGADVT EMA+ L+QG EWAL + H
Sbjct: 237 EKKKLHLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQGHNPEWALPKAH 296
Query: 239 SSE-DLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKP 296
SE FGVQI + A+ E I + T V +++N GCPID++ +G GS LL +P
Sbjct: 297 VSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQGSALLDQP 356
Query: 297 MRMKGIIE---ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGRTRQ 352
++ I+ A+SG D P+T+K+RTG EGKN +L++ + G A+A+T+HGR+RQ
Sbjct: 357 SKLLRILSGMNASSG--DIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQ 414
Query: 353 QRYSKLADWDYI 364
QRYSK ADW+YI
Sbjct: 415 QRYSKEADWNYI 426
Score = 39 (18.8 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 13 DVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSL 58
D ++ A +TN EVN ++KD + + K K F + +K L
Sbjct: 164 DKMETAKTTNY-----EVNHIDKDQKMEMQKKKYFFKISQPVIKYL 204
>UNIPROTKB|A4RLF4 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 GO:GO:0005634
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:CM001232 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
OrthoDB:EOG4M950K RefSeq:XP_003714097.1 ProteinModelPortal:A4RLF4
STRING:A4RLF4 EnsemblFungi:MGG_01205T0 GeneID:2679761
KEGG:mgr:MGG_01205 Uniprot:A4RLF4
Length = 739
Score = 480 (174.0 bits), Expect = 9.7e-66, Sum P(2) = 9.7e-66
Identities = 91/169 (53%), Positives = 120/169 (71%)
Query: 372 SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGER 431
S ++ LGNGD YS+ D+ K D + + MI RGALIKPW+F EI ++ D +S ER
Sbjct: 572 SSEVFFLGNGDCYSHADYYK-AIDESHVDTVMIGRGALIKPWVFEEIAAGQYLDKSSTER 630
Query: 432 LNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYS 491
L ++ F R+G+E WG+D+ G+ TTR FLLE+LS+ RY+P+GLL+ +P +N RPPAY
Sbjct: 631 LGYIERFCRYGMEAWGADEMGIGTTRRFLLEYLSFAYRYVPIGLLERLPPAINDRPPAYR 690
Query: 492 GRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG 540
GRDDLETLMASD+ DWI+ISEM LG +GF F PKHKSN+Y+ G
Sbjct: 691 GRDDLETLMASDNYRDWIKISEMFLGPAHEGFKFQPKHKSNSYEMEAEG 739
Score = 215 (80.7 bits), Expect = 9.7e-66, Sum P(2) = 9.7e-66
Identities = 58/146 (39%), Positives = 78/146 (53%)
Query: 239 SSEDL-FGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKP 296
+S DL FG QI + + E + + ID+N GCPID++ GAGS LL +
Sbjct: 401 NSRDLRFGAQISASSHPLAIKAAECLTTFLPHLRLIDLNCGCPIDMIYKAGAGSALLEQH 460
Query: 297 MRMKGIIE---ATSGTVDKPITIKVRTGYFEG----KNRIDSLIA-------DIGTWGAS 342
+++ II A SG V PIT K+R G E K I+ + +G G +
Sbjct: 461 NKIERIIRGMNAVSGEV--PITCKLRIGVKENHPLAKKNIERAVFGSPDFRNQLGAPGCA 518
Query: 343 AVTVHGRTRQQRYSKLADWDYIYQCA 368
A+T+HGRTRQQRY K ADW YI +CA
Sbjct: 519 AITLHGRTRQQRYKKPADWGYIAECA 544
Score = 182 (69.1 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 56/160 (35%), Positives = 80/160 (50%)
Query: 179 EKKLIDF-REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 237
EK+ + F RE LAPLTT GNLPFRR+C LGA T EMAM ++QGQ SEWAL++
Sbjct: 315 EKRRLYFGRETPVLAPLTTQGNLPFRRLCVDLGAQGTYSEMAMAKPIVQGQQSEWALMKA 374
Query: 238 HSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNK---GAGSCLLT 294
H SE + P+TLA ++ + + D+ G I + A CL T
Sbjct: 375 HESE----TRPPTLSPETLASNSPIV--KVYDNSRDLRFGAQISASSHPLAIKAAECLTT 428
Query: 295 KPMRMKGIIEATSGT-VDKPITIKVRTGYFEGKNRIDSLI 333
++ +I+ G +D + E N+I+ +I
Sbjct: 429 FLPHLR-LIDLNCGCPIDMIYKAGAGSALLEQHNKIERII 467
>POMBASE|SPAC16.04 [details] [associations]
symbol:dus3 "tRNA dihydrouridine synthase Dus3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=ISO] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 PomBase:SPAC16.04 GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05544
HOGENOM:HOG000240610 OrthoDB:EOG4M950K PIR:T37732
RefSeq:NP_594572.1 ProteinModelPortal:Q9UTH9 STRING:Q9UTH9
EnsemblFungi:SPAC16.04.1 GeneID:2541573 KEGG:spo:SPAC16.04
OMA:PWIFEEV NextBio:20802667 Uniprot:Q9UTH9
Length = 617
Score = 627 (225.8 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 131/290 (45%), Positives = 186/290 (64%)
Query: 269 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRM-KGI--IEATSGTVDKPITIKVRTGYFEG 325
VDF+D+N GCPID+V +GAGS LL P R+ + + ++A SG + P+T+K+R G +
Sbjct: 331 VDFLDLNCGCPIDLVFRQGAGSSLLENPGRLLRNLQGMDAVSGQI--PVTVKLRMGNKDD 388
Query: 326 KNRIDSLIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS------DDL--- 375
+ +LI I SA T+HGR+RQQRYSK A+WDYI + A K D+L
Sbjct: 389 HPVVKNLIGRIFNETNTSAATLHGRSRQQRYSKNANWDYIGEIASKVKSMNERIDELPED 448
Query: 376 -------QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITS 428
++GNGD YS+ DW + + + MIARGAL+KPWIF EI+ ++ D +S
Sbjct: 449 SLRTQPLSLIGNGDCYSWQDW--YDGVNKGVDTVMIARGALVKPWIFEEIEARQFIDKSS 506
Query: 429 GERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPP 488
+RL +++ + GLE+WGSD +GV TTR F LE++S+ RY P+ L +V RLN RPP
Sbjct: 507 TQRLEMLEQYCNNGLEYWGSDSQGVNTTRRFFLEFMSFFHRYTPIALYEVQRPRLNDRPP 566
Query: 489 AYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAE 538
Y+ RD++ETL+AS+ DW+++SE LG P+ FTF PKHKSN+ + AE
Sbjct: 567 LYTARDEMETLLASNKVTDWVKLSEFFLGPTPERFTFTPKHKSNSVEEAE 616
Score = 427 (155.4 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 113/287 (39%), Positives = 158/287 (55%)
Query: 103 ESECSPCVPEENNIVNDRPLKKAKSENVENCCSV-EGDNGVSVLEEDT---RNNTADTQP 158
ES S + EE + + + EN + ++ EG SV E+T +N T
Sbjct: 151 ESIISAVLGEEKPDPSSK-VSNIPEENRDATSAISEGKETESVSLEETGVLKNQTVSVNV 209
Query: 159 AAKIDDILPETDGSLKT-HSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGE 217
K ++ +L T +EK LID+R++ LAPLTTVGN PFRR+C LGAD E
Sbjct: 210 DLKEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTTVGNPPFRRLCGSLGADTFYSE 269
Query: 218 MAMCTNLLQGQASEWALLR---------RHSSEDLFGVQICGAYPDTLARTVELIDQQCT 268
MAMC L+QG EWAL+R R + GVQ+ +T ++I +QC
Sbjct: 270 MAMCYPLMQGHQPEWALVRGLNYEREMMRGGRRGILGVQLATGKLWQATKTAQVIAEQCD 329
Query: 269 -VDFIDINMGCPIDIVVNKGAGSCLLTKPMRM-KGI--IEATSGTVDKPITIKVRTGYFE 324
VDF+D+N GCPID+V +GAGS LL P R+ + + ++A SG + P+T+K+R G +
Sbjct: 330 GVDFLDLNCGCPIDLVFRQGAGSSLLENPGRLLRNLQGMDAVSGQI--PVTVKLRMGNKD 387
Query: 325 GKNRIDSLIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARK 370
+ +LI I SA T+HGR+RQQRYSK A+WDYI + A K
Sbjct: 388 DHPVVKNLIGRIFNETNTSAATLHGRSRQQRYSKNANWDYIGEIASK 434
Score = 55 (24.4 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 163 DDILPETDGSLKTHSREKKLIDFREKLY------LAPLTTVGN-LPFRRVCK 207
++ L + DG+ K +E+ REK++ L P ++GN P++ CK
Sbjct: 13 EEFLVKQDGNKKRKRKERGQNKRREKIHVKENNALCPAISIGNECPYKENCK 64
Score = 41 (19.5 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 30 VNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAK 65
VN + K+VQ+ L ++ KA++ + ++ LG K
Sbjct: 129 VNTVGKEVQRKLRTKQLDLSKAESIISAV--LGEEK 162
>UNIPROTKB|K7EQU9 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AC011499 PANTHER:PTHR11082 HGNC:HGNC:26920
Ensembl:ENST00000591560 Uniprot:K7EQU9
Length = 171
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 80/151 (52%), Positives = 107/151 (70%)
Query: 198 GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLA 257
GNLPFRR+CK GADVTCGEMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+
Sbjct: 2 GNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMT 61
Query: 258 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIK 317
+ EL+ + VDF+DIN+GCPID+V KG G L+ + + + I+ + +D P+T+K
Sbjct: 62 KCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVK 121
Query: 318 VRTGYFEGKNRIDSLIADIGTWGASAVTVHG 348
+RTG E N L+ ++ WG + VT G
Sbjct: 122 IRTGVQERVNLAHRLLPELRDWGVALVTEMG 152
>UNIPROTKB|K7EM42 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
EMBL:AC011499 PANTHER:PTHR11082 HGNC:HGNC:26920
Ensembl:ENST00000590343 Uniprot:K7EM42
Length = 169
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 68/93 (73%), Positives = 79/93 (84%)
Query: 419 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 478
KEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE TR FLLEWLS+ CRY+PVGLL+
Sbjct: 2 KEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVGLLER 61
Query: 479 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRI 511
+PQR+N RPP Y GRD LETLMAS AADWIRI
Sbjct: 62 LPQRINERPPYYLGRDYLETLMASQKAADWIRI 94
>TIGR_CMR|GSU_1005 [details] [associations]
symbol:GSU_1005 "dihydrouridine synthase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
PATRIC:22024782 ProtClustDB:CLSK828131
BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
Length = 325
Score = 335 (123.0 bits), Expect = 6.0e-30, P = 6.0e-30
Identities = 95/284 (33%), Positives = 139/284 (48%)
Query: 189 LYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQI 248
L LAP+ + NLPFR + + GA + EM L++ + LLR + G+Q+
Sbjct: 16 LILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQL 75
Query: 249 CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG 308
G PD + R +D D IDINMGCP+ VV GAGS L+ +P +++ I+ A
Sbjct: 76 FGDDPDVMGRVAATVDGYG--DLIDINMGCPVKKVVGTGAGSALMREPDKVRAIVRAVRR 133
Query: 309 TVDKPITIKVRTGYF-EGKNRIDSLIADIGTW-GASAVTVHGRTRQQRYSKLADWDYIYQ 366
P+T+K+R+G+ E N I IA I G +AVT+H R+R Q + ADW + +
Sbjct: 134 ATRLPLTVKIRSGWSCEDANFIQ--IARIAEEEGCNAVTLHPRSRAQMFEGTADWTKLAE 191
Query: 367 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE---IKEQRH 423
+ + + V+G+GD++S D D MIARGAL PWIF + + R
Sbjct: 192 LKQAVA--IPVIGSGDLFSAADVAA-MLDRTGCDGVMIARGALGNPWIFRQALDLMAGRE 248
Query: 424 WDITS-GERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSY 466
S ERL + + E G E +H L W S+
Sbjct: 249 PAAASPAERLAVARRHLALFTEMAGERVAAREMRKH--LGWYSH 290
>TIGR_CMR|CJE_0118 [details] [associations]
symbol:CJE_0118 "tRNA-dihydrouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 Gene3D:1.10.1200.80 OMA:ECAKEHL
RefSeq:YP_178142.1 ProteinModelPortal:Q5HX43 STRING:Q5HX43
GeneID:3230881 KEGG:cjr:CJE0118 PATRIC:20041943
ProtClustDB:CLSK872423 BioCyc:CJEJ195099:GJC0-122-MONOMER
Uniprot:Q5HX43
Length = 308
Score = 333 (122.3 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 96/285 (33%), Positives = 147/285 (51%)
Query: 182 LIDFREK-LYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSS 240
+IDF +K L+LAP+ +LPFR V K GAD+T EM L+ + +L R
Sbjct: 1 MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAEL 60
Query: 241 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMK 300
E+ + VQI G + L + V+++++ VD ID N GCP++ VV + AGS LL K
Sbjct: 61 ENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFK 120
Query: 301 GIIEATSGTVDKPIT-IKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 359
++ K +T +K R G+ E + I + + G +++HGRTR+Q YS A
Sbjct: 121 NLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICE--SLGVDFISIHGRTRKQLYSGKA 178
Query: 360 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK-SDCPELASCMIARGALIKPWIFTEI 418
D+ I + KAS + V+ NGDI + +K + C L MI R ++ PWIF EI
Sbjct: 179 DYGSI--ASAKASVKIPVIANGDINAQNAKEVYKITKCDGL---MIGRASVGNPWIFYEI 233
Query: 419 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEW 463
K + D + + I+ F ++H+ D+ GV R L E+
Sbjct: 234 KSGKSVDEKLKKEI-ILTHFDEM-IKHY-KDQ-GVSIFRKHLHEY 274
>UNIPROTKB|Q81VW4 [details] [associations]
symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 324 (119.1 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 84/239 (35%), Positives = 119/239 (49%)
Query: 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 242
I+ + + LAP+ V N FR K GA + C EM +L +L E
Sbjct: 14 IEMKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREK 73
Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302
+QI G +TL + +DQ T D IDINMGCP+ +V AG+ L P ++ +
Sbjct: 74 PLSLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYEM 133
Query: 303 IEATSGTVDKPITIKVRTGYFEGKN-RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 361
+ A V+KP+T+K+R G+ E I++ A + G V VHGRTR Q Y ADW
Sbjct: 134 VAAVVDAVEKPVTVKMRIGWDEDHIFAIENAKA-VERAGGQVVAVHGRTRVQMYEGKADW 192
Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW-IFTEIK 419
D I Q K + ++ V+GNGD+ + D K D + MI R AL PW I+ +K
Sbjct: 193 DIIKQV--KQAVNIPVIGNGDVATPQD-AKRMLDEIGVDGVMIGRAALGDPWMIYRTVK 248
>TIGR_CMR|BA_0075 [details] [associations]
symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 324 (119.1 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 84/239 (35%), Positives = 119/239 (49%)
Query: 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 242
I+ + + LAP+ V N FR K GA + C EM +L +L E
Sbjct: 14 IEMKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREK 73
Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302
+QI G +TL + +DQ T D IDINMGCP+ +V AG+ L P ++ +
Sbjct: 74 PLSLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYEM 133
Query: 303 IEATSGTVDKPITIKVRTGYFEGKN-RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 361
+ A V+KP+T+K+R G+ E I++ A + G V VHGRTR Q Y ADW
Sbjct: 134 VAAVVDAVEKPVTVKMRIGWDEDHIFAIENAKA-VERAGGQVVAVHGRTRVQMYEGKADW 192
Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW-IFTEIK 419
D I Q K + ++ V+GNGD+ + D K D + MI R AL PW I+ +K
Sbjct: 193 DIIKQV--KQAVNIPVIGNGDVATPQD-AKRMLDEIGVDGVMIGRAALGDPWMIYRTVK 248
>TIGR_CMR|NSE_0373 [details] [associations]
symbol:NSE_0373 "putative tRNA-dihydrouridine synthase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_506262.1
ProteinModelPortal:Q2GE34 STRING:Q2GE34 GeneID:3932261
KEGG:nse:NSE_0373 PATRIC:22680819 OMA:ECAKEHL
ProtClustDB:CLSK2527833 BioCyc:NSEN222891:GHFU-398-MONOMER
Uniprot:Q2GE34
Length = 331
Score = 316 (116.3 bits), Expect = 8.0e-28, P = 8.0e-28
Identities = 86/289 (29%), Positives = 134/289 (46%)
Query: 187 EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGV 246
+ + LAP++ V ++P+R + K GA + EM ++ + ED+ +
Sbjct: 12 DNVILAPMSGVTDMPYRDLVKSFGAGLVVSEMIASRAMILKTKDTMKKVSLSPREDITAI 71
Query: 247 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 306
Q+ G PD +A + I++ IDIN GCP+ VVN AGS L+ I+EAT
Sbjct: 72 QLAGFEPDVMAEAAK-INEDMGAKIIDINFGCPVKKVVNGYAGSYLMKDECHAAKILEAT 130
Query: 307 SGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQ 366
V P+T+K+RTG+ E L G +T+HGRTR Q Y +DW +I
Sbjct: 131 VKAVKIPVTLKMRTGWDENHRNAPKLAKIAEDLGIKMITIHGRTRAQMYKGKSDWQFIRT 190
Query: 367 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE-----Q 421
K + + V+ NGDI +Y D + + MI RGA KPW + +
Sbjct: 191 V--KNTVKIPVIANGDIKTYEDAERALVESGA-DGIMIGRGAYGKPWSIRNMLHFLRTGK 247
Query: 422 RHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRY 470
+ + T E+L I+ H+G++ G+ R +L W Y+ Y
Sbjct: 248 KLQEPTPQEKLPIILQHISSIFSHYGTEM-GIGIARKHIL-W--YSANY 292
>UNIPROTKB|Q8EJR8 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 311 (114.5 bits), Expect = 2.9e-27, P = 2.9e-27
Identities = 89/249 (35%), Positives = 134/249 (53%)
Query: 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED-LF 244
+ +L +AP+ V + FR +C GA + EM + +N + HS E+ +
Sbjct: 9 KNQLIVAPMAGVTDQAFRNLCLRYGAALAVSEM-LSSNPEVWDTDKSRQRMTHSGEEGIR 67
Query: 245 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304
VQI GA P+ +A+ + +Q IDINMGCP V K AGS L+ P +K I++
Sbjct: 68 SVQIAGADPELMAQAAQFNVEQ-GAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQ 126
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDY 363
A VD P+T+K+RTG+ E ++R IA I G +++ VHGRTRQ Y A++D
Sbjct: 127 AVVAAVDVPVTLKIRTGW-EPEHRNGVQIAQIAEDCGIASLAVHGRTRQCMYKGNAEYDT 185
Query: 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH 423
I A K + + V+ NGDI S + + D + + MI RGA +PWIF EI+ H
Sbjct: 186 IK--AIKQNVSIPVVANGDIDSP-EKARFVLDYTGVDALMIGRGAQGRPWIFREIQ---H 239
Query: 424 WDITSGERL 432
+ + +G +L
Sbjct: 240 Y-LETGNKL 247
>TIGR_CMR|SO_0394 [details] [associations]
symbol:SO_0394 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 311 (114.5 bits), Expect = 2.9e-27, P = 2.9e-27
Identities = 89/249 (35%), Positives = 134/249 (53%)
Query: 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED-LF 244
+ +L +AP+ V + FR +C GA + EM + +N + HS E+ +
Sbjct: 9 KNQLIVAPMAGVTDQAFRNLCLRYGAALAVSEM-LSSNPEVWDTDKSRQRMTHSGEEGIR 67
Query: 245 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304
VQI GA P+ +A+ + +Q IDINMGCP V K AGS L+ P +K I++
Sbjct: 68 SVQIAGADPELMAQAAQFNVEQ-GAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQ 126
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDY 363
A VD P+T+K+RTG+ E ++R IA I G +++ VHGRTRQ Y A++D
Sbjct: 127 AVVAAVDVPVTLKIRTGW-EPEHRNGVQIAQIAEDCGIASLAVHGRTRQCMYKGNAEYDT 185
Query: 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH 423
I A K + + V+ NGDI S + + D + + MI RGA +PWIF EI+ H
Sbjct: 186 IK--AIKQNVSIPVVANGDIDSP-EKARFVLDYTGVDALMIGRGAQGRPWIFREIQ---H 239
Query: 424 WDITSGERL 432
+ + +G +L
Sbjct: 240 Y-LETGNKL 247
>UNIPROTKB|Q3A9L8 [details] [associations]
symbol:CHY_2369 "tRNA-dihydrouridine synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 307 (113.1 bits), Expect = 8.0e-27, P = 8.0e-27
Identities = 73/242 (30%), Positives = 118/242 (48%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S ++ I + + +AP+ V + FR +C+ GA +T EM LL G + ++
Sbjct: 2 SATRREIKLKNPVIVAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMID 61
Query: 237 RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP 296
VQI G+ P+ +A ++++ IDINMGCP +V G G+ L+ KP
Sbjct: 62 LQGEAMPVAVQIFGSSPEKMAEAARIVEE-AGASMIDINMGCPAPKIVKNGEGAALMLKP 120
Query: 297 MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYS 356
+ I+ A V P+++K+R G+ + + GA +TVHGRTR+Q YS
Sbjct: 121 ELAEKIVMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRTREQFYS 180
Query: 357 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 416
ADW+ I + K + ++V GNGD+ S K + + MI R + PW+
Sbjct: 181 GKADWEIIRRV--KQAVKVKVAGNGDVDSPQK-AKEMLELTGVDFVMIGRAVMGNPWLIQ 237
Query: 417 EI 418
+I
Sbjct: 238 QI 239
>TIGR_CMR|CHY_2369 [details] [associations]
symbol:CHY_2369 "putative TIM-barrel protein, NifR3
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 307 (113.1 bits), Expect = 8.0e-27, P = 8.0e-27
Identities = 73/242 (30%), Positives = 118/242 (48%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S ++ I + + +AP+ V + FR +C+ GA +T EM LL G + ++
Sbjct: 2 SATRREIKLKNPVIVAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMID 61
Query: 237 RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP 296
VQI G+ P+ +A ++++ IDINMGCP +V G G+ L+ KP
Sbjct: 62 LQGEAMPVAVQIFGSSPEKMAEAARIVEE-AGASMIDINMGCPAPKIVKNGEGAALMLKP 120
Query: 297 MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYS 356
+ I+ A V P+++K+R G+ + + GA +TVHGRTR+Q YS
Sbjct: 121 ELAEKIVMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRTREQFYS 180
Query: 357 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 416
ADW+ I + K + ++V GNGD+ S K + + MI R + PW+
Sbjct: 181 GKADWEIIRRV--KQAVKVKVAGNGDVDSPQK-AKEMLELTGVDFVMIGRAVMGNPWLIQ 237
Query: 417 EI 418
+I
Sbjct: 238 QI 239
>UNIPROTKB|Q87VS1 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
Uniprot:Q87VS1
Length = 337
Score = 304 (112.1 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 89/261 (34%), Positives = 128/261 (49%)
Query: 189 LYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCT-NLLQGQASEWALLRRHSSEDLFGVQ 247
L LAP+ V + PFR++C+ LGA + EM +L + S ++ E VQ
Sbjct: 15 LILAPMAGVTDQPFRQLCRQLGAGLVVSEMVTSDMSLWNSRKSRLRMIHAGDPEPR-SVQ 73
Query: 248 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 307
I G +A + + IDINMGCP V NK AGS LL + I++A
Sbjct: 74 IAGGDAQMMADAARA-NVELGAQIIDINMGCPAKKVCNKAAGSALLKDEQLVNDILQAVV 132
Query: 308 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTW-GASAVTVHGRTRQQRYSKLADWDYIYQ 366
VD P+T+K+RTG+ + NR +A I G A+ VHGRTR Y+ A++D I
Sbjct: 133 AAVDVPVTLKIRTGW-DRDNRNGLTVAKIAEQAGIQALAVHGRTRADLYTGEAEYDTIAM 191
Query: 367 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDI 426
+ S + V NGDI S + +H +I R A +PWIF EI+ H+ +
Sbjct: 192 IKQAVS--IPVFANGDIDSP-EKARHVLQATGADGLLIGRAAQGRPWIFREIE---HYLL 245
Query: 427 TSGERLNIMK--DFARFGLEH 445
T G+ L ++ + R LEH
Sbjct: 246 T-GKTLPALQSSEVERILLEH 265
>UNIPROTKB|Q489F6 [details] [associations]
symbol:CPS_0550 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_267308.1 ProteinModelPortal:Q489F6
STRING:Q489F6 GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 302 (111.4 bits), Expect = 2.9e-26, P = 2.9e-26
Identities = 84/234 (35%), Positives = 126/234 (53%)
Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHS-SEDLFGV 246
++ LAP+ + + PFR++C LGA + EM + +N + L H + + V
Sbjct: 11 QVMLAPMAGITDQPFRQLCCQLGAGLAVSEM-LSSNPKVWNTEKSKLRMLHGDAAGIRSV 69
Query: 247 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 306
QI G+ PD LA + ++ IDINMGCP V K AGS LL +P +++ I+++
Sbjct: 70 QIAGSCPDELAFAAK-VNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSV 128
Query: 307 SGTVDKPITIKVRTGYFEG-KNRIDSLIADIG-TWGASAVTVHGRTRQQRYSKLADWDYI 364
VD P+T+K+RTG+ E +N I+ IA I G +++ VHGRTR Y A++D I
Sbjct: 129 VNAVDIPVTLKIRTGWCEDTRNGIE--IAKIAENSGIASLAVHGRTRNDFYKGNAEYDTI 186
Query: 365 YQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418
A K + + V+ NGDI S + D + M+ RGA +PWIF EI
Sbjct: 187 K--AIKLAISIPVVANGDITSP-EKALQVLDHTGADAIMVGRGAQGRPWIFREI 237
>TIGR_CMR|CPS_0550 [details] [associations]
symbol:CPS_0550 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:YP_267308.1 ProteinModelPortal:Q489F6 STRING:Q489F6
GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 302 (111.4 bits), Expect = 2.9e-26, P = 2.9e-26
Identities = 84/234 (35%), Positives = 126/234 (53%)
Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHS-SEDLFGV 246
++ LAP+ + + PFR++C LGA + EM + +N + L H + + V
Sbjct: 11 QVMLAPMAGITDQPFRQLCCQLGAGLAVSEM-LSSNPKVWNTEKSKLRMLHGDAAGIRSV 69
Query: 247 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 306
QI G+ PD LA + ++ IDINMGCP V K AGS LL +P +++ I+++
Sbjct: 70 QIAGSCPDELAFAAK-VNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSV 128
Query: 307 SGTVDKPITIKVRTGYFEG-KNRIDSLIADIG-TWGASAVTVHGRTRQQRYSKLADWDYI 364
VD P+T+K+RTG+ E +N I+ IA I G +++ VHGRTR Y A++D I
Sbjct: 129 VNAVDIPVTLKIRTGWCEDTRNGIE--IAKIAENSGIASLAVHGRTRNDFYKGNAEYDTI 186
Query: 365 YQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418
A K + + V+ NGDI S + D + M+ RGA +PWIF EI
Sbjct: 187 K--AIKLAISIPVVANGDITSP-EKALQVLDHTGADAIMVGRGAQGRPWIFREI 237
>UNIPROTKB|P0ABT5 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 EMBL:X62399 EMBL:M95784 EMBL:S67010 EMBL:J03816
EMBL:J03245 PIR:B47043 RefSeq:NP_417726.1 RefSeq:YP_491442.1
ProteinModelPortal:P0ABT5 SMR:P0ABT5 DIP:DIP-48240N IntAct:P0ABT5
EnsemblBacteria:EBESCT00000004917 EnsemblBacteria:EBESCT00000016888
GeneID:12932871 GeneID:947707 KEGG:ecj:Y75_p3178 KEGG:eco:b3260
PATRIC:32121950 EchoBASE:EB1287 EcoGene:EG11311
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR ProtClustDB:PRK10415
BioCyc:EcoCyc:EG11311-MONOMER BioCyc:ECOL316407:JW3228-MONOMER
BioCyc:MetaCyc:EG11311-MONOMER Genevestigator:P0ABT5
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 Uniprot:P0ABT5
Length = 321
Score = 299 (110.3 bits), Expect = 6.1e-26, P = 6.1e-26
Identities = 85/248 (34%), Positives = 125/248 (50%)
Query: 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED-LF 244
R +L AP+ + + PFR +C +GA +T EM M +N ++ + L H E +
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGIR 67
Query: 245 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304
VQI G+ P +A I+ + IDINMGCP V K AGS LL P +K I+
Sbjct: 68 TVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 364
VD P+T+K+RTG+ + + G A+T+HGRTR ++ A++D I
Sbjct: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186
Query: 365 YQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHW 424
+K S + V+ NGDI L + D + MI R A +PWIF EI+ H+
Sbjct: 187 RAVKQKVS--IPVIANGDITDPLK-ARAVLDYTGADALMIGRAAQGRPWIFREIQ---HY 240
Query: 425 DITSGERL 432
+ +GE L
Sbjct: 241 -LDTGELL 247
>TIGR_CMR|APH_0575 [details] [associations]
symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
Uniprot:Q2GKD5
Length = 315
Score = 278 (102.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 87/285 (30%), Positives = 139/285 (48%)
Query: 191 LAPLTTVGNLPFRRVCKVLGADVTCGEM-AMCTNLLQGQASEWALLRRHSSEDLFGVQIC 249
LAP++ V +LPFR + LGA + EM A +L+ + S +++ VQ+
Sbjct: 12 LAPMSGVTDLPFRTTVRKLGAGLLISEMVASRAMILKTRQS----MQKSEVCPNTSVQLA 67
Query: 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT 309
G P+ +A + I++ ID+N GCP VV+ AGS L+ + I+E+
Sbjct: 68 GCTPEIMAEAAK-INEDLGAKSIDLNFGCPAKKVVDGYAGSALMKDEVIATKIMESVVKA 126
Query: 310 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR 369
V P+T+K+R G+ +L G +T+HGRTR Q +S ADW ++ +
Sbjct: 127 VKVPVTVKMRMGWDTTNLNAPTLAKVAEDVGIQMITIHGRTRSQMFSGSADWKFVKRV-- 184
Query: 370 KASDDLQVLGNGDIYSYLD----WNKHKSDCPELASCMIARGALIKPWIFTE-IKEQRHW 424
K + V+ NGDI + D N+ +D MI RGA KPW+ + + ++
Sbjct: 185 KECVKIPVIVNGDIRTLDDIVVALNESGAD-----GVMIGRGAYGKPWLIKQALSFMKNS 239
Query: 425 DI----TSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLS 465
+I T E+L I+ D + L+++G D GV+ R L W S
Sbjct: 240 EILPEPTKSEKLAIILDHYDYALDYYGKDL-GVKILRKHL-SWYS 282
Score = 40 (19.1 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 460 LLEWLSYTCRYIPVGL-LDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEML 515
+L+ Y Y L + ++ + L+W +YSG + ++ +D + + E L
Sbjct: 254 ILDHYDYALDYYGKDLGVKILRKHLSWYSSSYSGASYFRAQV--NTMSDPVEVREKL 308
>TIGR_CMR|ECH_0758 [details] [associations]
symbol:ECH_0758 "putative tRNA-dihydrouridine synthase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_507556.1
ProteinModelPortal:Q2GG77 STRING:Q2GG77 GeneID:3927061
KEGG:ech:ECH_0758 PATRIC:20576950 ProtClustDB:CLSK749467
BioCyc:ECHA205920:GJNR-761-MONOMER Uniprot:Q2GG77
Length = 317
Score = 292 (107.8 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 90/282 (31%), Positives = 138/282 (48%)
Query: 191 LAPLTTVGNLPFRRVCKVLGADVTCGEM-AMCTNLLQGQASEWALLRRHSSEDLFGVQIC 249
LAP++ V + PFR + K LGA + EM A ++Q + S L++ + VQ+
Sbjct: 14 LAPMSGVTDFPFRYLVKSLGAGLLVSEMIASRAMIIQTKQS----LQKSQIQINTAVQLA 69
Query: 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT 309
G P +A +L ++ IDIN GCP+ VVN AGS L+ I+E+
Sbjct: 70 GCDPTIMADAAKL-NEDMGAQIIDINFGCPVKKVVNSYAGSALMKDETTAAKILESVVKA 128
Query: 310 VDKPITIKVRTGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIYQCA 368
V P+T+K+RTG+ + N +A I G +T+HGRTR Q ++ ADW +I
Sbjct: 129 VKIPVTLKMRTGW-DNNNLNSPKLAKIAEETGIKMITIHGRTRTQMFTGKADWKFIRNI- 186
Query: 369 RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE----IKEQRHW 424
K + V+ NGDI + D K + + MI RGA KPW + IK
Sbjct: 187 -KKCVKIPVIVNGDIKNLNDI-KTSLEESQADGIMIGRGAYGKPWFINQALHFIKSGTIL 244
Query: 425 -DITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLS 465
D + E+L I+ + +E++G D GV+ ++ + W S
Sbjct: 245 PDPSPSEKLKIITNHYDHMIEYYGKDT-GVKISKKHI-GWYS 284
>UNIPROTKB|Q607L4 [details] [associations]
symbol:MCA1745 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
Length = 327
Score = 287 (106.1 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 88/236 (37%), Positives = 121/236 (51%)
Query: 191 LAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR-HSSED-LFGVQI 248
LAP+ V +LPFRR+C+ GA + EM + LQ A+ + LR+ H E VQI
Sbjct: 14 LAPMAGVTDLPFRRLCRQFGAGLAVSEMISASPALQ--ATRKSRLRQDHRGEPGPISVQI 71
Query: 249 CGAYPDTLA----RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304
GA P +A RTV+L D IDINMGCP V N AGS LL + I+E
Sbjct: 72 VGADPREMAEAARRTVDL-----GADIIDINMGCPAKKVCNVAAGSALLRDEKLVANILE 126
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 364
A V P+T+K+RTG+ S+ + G A+TVHGRTR ++ A++ I
Sbjct: 127 AVVQAVPVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVHGRTRACGFAGAAEYSTI 186
Query: 365 YQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS--CMIARGALIKPWIFTEI 418
+ +KA + V+ NGDI S K ++ + MI RGA +PW+ EI
Sbjct: 187 TE-VKKAIG-IPVIANGDIDSP---GKAEAVLRSTGADAVMIGRGAWGRPWLLREI 237
>UNIPROTKB|Q9KV66 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05540 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:B82341
RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66 DNASU:2615014
GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 285 (105.4 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 80/236 (33%), Positives = 117/236 (49%)
Query: 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 245
+ L +AP+ V + PFR +C GA + EM C L A + +
Sbjct: 9 KNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVHEGESGIRS 68
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
VQI G+ P +A + + IDINMGCP V K AGS LL P ++ I++A
Sbjct: 69 VQIAGSDPQLMAEAAQFSVEN-GAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKA 127
Query: 306 TSGTVDKPITIKVRTGY-FEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDY 363
V+ P+T+K RTG+ + KN + IA + G A+ +HGRTR Y A++D
Sbjct: 128 VVNAVNVPVTLKTRTGWDTDNKNCLS--IAQLAEDCGIQALALHGRTRACMYKGEAEYDS 185
Query: 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419
I A KA+ + V+ NGDI S + ++ + + MI R A +PWIF EI+
Sbjct: 186 IK--AVKAAVSIPVIANGDIDSP-EKARYVLEYTGADALMIGRPAQGRPWIFQEIQ 238
>TIGR_CMR|VC_0291 [details] [associations]
symbol:VC_0291 "NifR3/Smm1 family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
PIR:B82341 RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66
DNASU:2615014 GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 285 (105.4 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 80/236 (33%), Positives = 117/236 (49%)
Query: 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 245
+ L +AP+ V + PFR +C GA + EM C L A + +
Sbjct: 9 KNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVHEGESGIRS 68
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
VQI G+ P +A + + IDINMGCP V K AGS LL P ++ I++A
Sbjct: 69 VQIAGSDPQLMAEAAQFSVEN-GAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKA 127
Query: 306 TSGTVDKPITIKVRTGY-FEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDY 363
V+ P+T+K RTG+ + KN + IA + G A+ +HGRTR Y A++D
Sbjct: 128 VVNAVNVPVTLKTRTGWDTDNKNCLS--IAQLAEDCGIQALALHGRTRACMYKGEAEYDS 185
Query: 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419
I A KA+ + V+ NGDI S + ++ + + MI R A +PWIF EI+
Sbjct: 186 IK--AVKAAVSIPVIANGDIDSP-EKARYVLEYTGADALMIGRPAQGRPWIFQEIQ 238
>TAIR|locus:2114713 [details] [associations]
symbol:AT3G49640 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
EMBL:CP002686 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05543 OMA:KEMIMHY
IPI:IPI00548775 RefSeq:NP_190533.3 UniGene:At.74022
ProteinModelPortal:F4IY04 SMR:F4IY04 PRIDE:F4IY04
EnsemblPlants:AT3G49640.1 GeneID:824126 KEGG:ath:AT3G49640
Uniprot:F4IY04
Length = 329
Score = 258 (95.9 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 85/306 (27%), Positives = 134/306 (43%)
Query: 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGE------MAMCTNLLQGQASEWALLR 236
+D++ KL LAP+ VG L FR + GAD+T GE + C L + +
Sbjct: 1 MDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVE 60
Query: 237 RHSSEDLFGV-------QICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGA 288
+ + +F + R ++ + C V IDINMGCP + G
Sbjct: 61 KGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGM 120
Query: 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHG 348
G+ LL+KP + I+ +D P+T K+R + L I G A+ VHG
Sbjct: 121 GAALLSKPELIHDILATLKRNLDVPVTCKIRL--LKSPADTVELARRIEKLGVPALAVHG 178
Query: 349 RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408
R R A WD I S + V+ NGD+ Y D+++ K+ AS M+ARGA
Sbjct: 179 RKIADRPRDPAKWDEIADVVAALS--IPVIANGDVLEYDDFSRIKT-ATGAASVMVARGA 235
Query: 409 LIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTC 468
+ IF+ K + HW+ ++ K + R + W +D K + T ++ ++C
Sbjct: 236 MWNASIFSP-KGKSHWE-------DVKKKYLRKSIL-WNNDVKSTKYTIKEMIA--HHSC 284
Query: 469 RYIPVG 474
+P G
Sbjct: 285 LELPEG 290
>UNIPROTKB|O53835 [details] [associations]
symbol:dus "Probable tRNA-dihydrouridine synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
ProteinModelPortal:O53835 SMR:O53835
EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
ProtClustDB:CLSK871859 Uniprot:O53835
Length = 389
Score = 269 (99.8 bits), Expect = 2.9e-21, P = 2.9e-21
Identities = 90/300 (30%), Positives = 134/300 (44%)
Query: 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGAD---VTCG----EMAMCTNLLQGQASEWALL 235
I+ + LAP+ V N+ FR +C+ L G EM L++ +
Sbjct: 18 IELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMT 77
Query: 236 RRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTK 295
+ E +Q+ PDT +I + D ID+N GCP+ V +G G+ L K
Sbjct: 78 TFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFK 137
Query: 296 PMRMKG-----IIEATSGTVDKPITIKVRTGYFEGKN-RIDS-LIADIGTWGASAVTVHG 348
R+ G + AT GT D P+T+K R G + + +D+ IA+ GA+AV +H
Sbjct: 138 -RRLFGQIVAAAVRATEGT-DIPVTVKFRIGIDDAHHTHLDAGRIAEAE--GAAAVALHA 193
Query: 349 RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408
RT QRYS ADW+ I + + + VLGNGDIY D S +I RG
Sbjct: 194 RTAAQRYSGTADWEQIARLKQHVRT-IPVLGNGDIYDAGDALAMMSTTG-CDGVVIGRGC 251
Query: 409 LIKPWIFTEIK-----EQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEW 463
L +PW+F E+ T GE +I++ H+G DK + +H + W
Sbjct: 252 LGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKH--IAW 309
>TIGR_CMR|SPO_2089 [details] [associations]
symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
Length = 327
Score = 254 (94.5 bits), Expect = 5.2e-21, P = 5.2e-21
Identities = 71/229 (31%), Positives = 104/229 (45%)
Query: 191 LAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG 250
LAP+ + + PFR + GA + EM ++Q + + + VQ+ G
Sbjct: 16 LAPMAGITDRPFRDLVMEFGAGMVVSEMVASQEMVQAKPGVRERAELSADVENTAVQLAG 75
Query: 251 AYPDTLARTV-ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT 309
+A ++ D+ V IDINMGCP V N +GS LL P +IEA
Sbjct: 76 RDTHWIAEAARQVADRGARV--IDINMGCPAKKVTNGYSGSALLKTPDHALRLIEAVVAA 133
Query: 310 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR 369
VD P+T+K R G+ + + G VT+HGRTR Q Y ADW I R
Sbjct: 134 VDVPVTLKTRLGWDDTLMNAPDVARRAAEAGVRMVTIHGRTRCQFYKGRADWAAI-AAVR 192
Query: 370 KASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418
+A D + ++ NGDI + + D M+ RGA +PW+ +I
Sbjct: 193 EAVD-VPLIANGDI-TCAHTARQALDRSGADGVMVGRGAQGRPWLLAQI 239
>UNIPROTKB|K7ER20 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AC011499 PANTHER:PTHR11082 HGNC:HGNC:26920
Ensembl:ENST00000592468 Uniprot:K7ER20
Length = 139
Score = 233 (87.1 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 41/101 (40%), Positives = 64/101 (63%)
Query: 245 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304
GVQ+ GA+PDT+ + EL+ + VDF+DIN+GCPID+V KG G L+ + + + I+
Sbjct: 2 GVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVR 61
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 345
+ +D P+T+K+RTG E N L+ ++ WG + VT
Sbjct: 62 GMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVT 102
>DICTYBASE|DDB_G0283877 [details] [associations]
symbol:dus2l "tRNA-dihydrouridine synthase 2-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA;ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0283877 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000153_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000057 eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082
KO:K05543 RefSeq:XP_638879.1 ProteinModelPortal:Q54QJ2
EnsemblProtists:DDB0238070 GeneID:8624277 KEGG:ddi:DDB_G0283877
OMA:TMTKYVV ProtClustDB:CLSZ2430328 Uniprot:Q54QJ2
Length = 402
Score = 224 (83.9 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 76/256 (29%), Positives = 115/256 (44%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ-------- 228
S+ ++D+ K +AP+ VG P R + G D+ E + L++
Sbjct: 22 SKNGVVMDYYNKKIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLK 81
Query: 229 -----ASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDI 282
A + L R S +D+ V G A +E C + +DINMGCP
Sbjct: 82 TIDFIAKDQTLCYRTSEKDVRNVLQLGTASSMTA--LEAAKVVCNDICALDINMGCPKFF 139
Query: 283 VVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIADIGTWGA 341
V G GS LL+KP +K I+ ++ PIT K+R + ID L+ I + G
Sbjct: 140 SVQGGMGSALLSKPETIKDILTTLKRNLNGIPITCKIRL-LSTDQETID-LLRIIESTGV 197
Query: 342 SAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 401
SA+ VH R +R A WD + AS + ++ NGDI+ + D K K ++ S
Sbjct: 198 SAIGVHCRMIPERPRDPAHWDRLENILSNASFSVPIIANGDIFEHADIEKIKKQT-KVDS 256
Query: 402 CMIARGALIKPWIFTE 417
MIARG + IF++
Sbjct: 257 IMIARGVVKNVSIFSK 272
>ZFIN|ZDB-GENE-100922-233 [details] [associations]
symbol:dus2l "dihydrouridine synthase 2-like, SMM1
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
ZFIN:ZDB-GENE-100922-233 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543
GeneTree:ENSGT00550000075019 EMBL:CU855766 EMBL:CU855937
IPI:IPI00902127 RefSeq:XP_001342694.3 Ensembl:ENSDART00000110221
Ensembl:ENSDART00000139002 GeneID:100003049 KEGG:dre:100003049
NextBio:20785702 Uniprot:E7F220
Length = 504
Score = 221 (82.9 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 75/251 (29%), Positives = 118/251 (47%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMC----TNLLQG----QAS 230
FR+K LAP+ VG LP R + GAD+ C E MA C ++LQ
Sbjct: 15 FRQKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMAQCERVENDVLQTIDFVAPD 74
Query: 231 EWALLRRHSSEDLFGV-QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAG 289
E + R S E V Q+ A P+ +L++ V +D+NMGCP + G G
Sbjct: 75 ERVMFRTCSKESGRVVFQMGTADPERALAVAKLVEND--VAAVDVNMGCPKEYSTKGGMG 132
Query: 290 SCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR 349
S LL+ P +++ I+ + KP+T K+R ++ ++ L+ I G +A+ VHGR
Sbjct: 133 SALLSDPEKIEAILTTLVKGISKPVTCKIRI-LSTIEDTVN-LVKRIEKTGVAAIAVHGR 190
Query: 350 TRQQRYSKLADWDYIYQCARKASDDLQVLGNG---DIYSYLDWNKHKSDCPELASCMIAR 406
+ +R DYI A+ S + V+ NG DI + + + +S M+AR
Sbjct: 191 MKDERPRHPVHCDYIQAVAQSVS--VPVIANGGSSDIVKEFEDIETFRESTGASSVMLAR 248
Query: 407 GALIKPWIFTE 417
A+ P +F +
Sbjct: 249 AAMWNPSVFRQ 259
>CGD|CAL0003746 [details] [associations]
symbol:orf19.966 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
CGD:CAL0003746 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 RefSeq:XP_716804.1
RefSeq:XP_716864.1 ProteinModelPortal:Q5A4Y0 STRING:Q5A4Y0
GeneID:3641524 GeneID:3641580 KEGG:cal:CaO19.8581
KEGG:cal:CaO19.966 Uniprot:Q5A4Y0
Length = 339
Score = 214 (80.4 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 62/236 (26%), Positives = 104/236 (44%)
Query: 190 YLA-PLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQI 248
Y+A P+ LPFR +C+ D+ M + ++ + + + S+ VQ+
Sbjct: 28 YIAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDKCVIVQV 87
Query: 249 CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG 308
D + +E+I VD I IN GCPI V +G G+ L++ P + +I+
Sbjct: 88 GVNNVDDFMKFIEMIHP--FVDGIGINCGCPIKEQVREGIGAALMSDPDLVAELIKTAKD 145
Query: 309 TVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA 368
I I + N+ + + G +TVHGRT+ R S + D I +
Sbjct: 146 KYGDSICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTKNTRSSVPVNLDAI-KII 204
Query: 369 RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHW 424
R+ + V+ NGD ++ D+ K D + M ARG L P +FT + ++ W
Sbjct: 205 RENVTTIPVIANGDCFTLTDFQKIV-DYTGVDGVMSARGVLANPALFTGL-DKTPW 258
>DICTYBASE|DDB_G0291360 [details] [associations]
symbol:dus4l "tRNA-dihydrouridine synthase 4-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 dictyBase:DDB_G0291360
GO:GO:0005739 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY RefSeq:XP_635163.1
ProteinModelPortal:Q54ES7 STRING:Q54ES7 EnsemblProtists:DDB0238074
GeneID:8628109 KEGG:ddi:DDB_G0291360 ProtClustDB:CLSZ2429554
Uniprot:Q54ES7
Length = 344
Score = 214 (80.4 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 76/272 (27%), Positives = 123/272 (45%)
Query: 145 LEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYL-APLTTVGNLPFR 203
+EE NN ++ + I+ D K + ++ I+ E + + AP+ LPFR
Sbjct: 15 IEEFNNNNNSNNNNEEEDKPIVKIYDSD-KQNLMDR--INSGEFMKIQAPMVRFSRLPFR 71
Query: 204 RVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELI 263
+ K G D+T M M + +A+ + + ++ VQ + L E +
Sbjct: 72 MLVKKWGCDITYTPMIMAAEFNRSEAARDSDFTINKLDEPLIVQFGVNNAEELVSAAEKV 131
Query: 264 DQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF 323
C IDIN GCP V+ +G G+ LL P R+ +++ + V PI+IK+R
Sbjct: 132 KDYC--QGIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQINNRVPIPISIKIRV-QS 188
Query: 324 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDI 383
+ K+ I+ L G S +TVHGRT + S D+D I K + L V NGD+
Sbjct: 189 DLKDTIE-LAKRAERIGVSWITVHGRTSAMKSSHPVDYDAIKLV--KDNVTLPVFANGDV 245
Query: 384 YSYLDWNKHKSDCPELASCMIARGALIKPWIF 415
++ N+ + + M ARG L P +F
Sbjct: 246 FTLSQSNEIREKTG-VNGVMSARGLLTNPALF 276
>FB|FBgn0030554 [details] [associations]
symbol:CG1434 species:7227 "Drosophila melanogaster"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISS]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE014298 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05543 GeneTree:ENSGT00550000075019 OMA:KEMIMHY
FlyBase:FBgn0030554 EMBL:BT031195 RefSeq:NP_572950.2 UniGene:Dm.163
SMR:Q9VY45 STRING:Q9VY45 EnsemblMetazoa:FBtr0073903 GeneID:32377
KEGG:dme:Dmel_CG1434 UCSC:CG1434-RA InParanoid:Q9VY45
GenomeRNAi:32377 NextBio:778177 Uniprot:Q9VY45
Length = 473
Score = 212 (79.7 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 72/262 (27%), Positives = 122/262 (46%)
Query: 172 SLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG---- 227
S+KT R +D+R KL LAP+ VG LP R + +GAD+ E + L++
Sbjct: 13 SMKTRQR----LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRP 68
Query: 228 ----------QASEWALLRRHSSEDLFGVQI-CGAYPDTLARTVELIDQQCTVDFIDINM 276
S+ ++ R +++ + + G A V + Q+ + +DINM
Sbjct: 69 NPALGTVDFVDPSDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQR-DISGLDINM 127
Query: 277 GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 336
GCP + + G G+ LL P + I+ +D P+T K+R + + ID L+ +
Sbjct: 128 GCPKEFSIKGGMGAALLADPDKAAHILRTLCSGLDIPVTCKIRI-LPDVEGTID-LVQKL 185
Query: 337 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG---DIYSYLDWNKHK 393
G +A+ +H RTR +R A + + A+ D+ ++ NG +++ Y D K +
Sbjct: 186 AATGIAAIGIHARTRDERPQHPAHPEVLRAVAQAV--DIPIIANGGSKNMHCYDDLRKFQ 243
Query: 394 SDCPELASCMIARGALIKPWIF 415
+C S M+AR A I IF
Sbjct: 244 MECGA-DSVMVARAAQINVSIF 264
>UNIPROTKB|Q487W0 [details] [associations]
symbol:CPS_0906 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:YP_267655.1 ProteinModelPortal:Q487W0
STRING:Q487W0 DNASU:3523360 GeneID:3523360 KEGG:cps:CPS_0906
PATRIC:21465097 BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 202 (76.2 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 68/226 (30%), Positives = 110/226 (48%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
VQ+ G YP+ +A + + + ID+N GCP V GS LL P + II+A
Sbjct: 71 VQLLGQYPEYMAENAAKVIELGSSG-IDLNFGCPSKTVNKSRGGSILLKDPENLYQIIKA 129
Query: 306 TSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY 363
V D ++ K+R GY + I++ A + GA+ +T+H RT+ + Y A W +
Sbjct: 130 VKEAVPSDTIVSAKIRLGYEDKTLAIENGQA-VEAAGANELTIHARTKLEGYKPPAHWHW 188
Query: 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC---MIARGALIKPWIFTEIKE 420
I + K + ++ V+ NG+I++ D K C E++ C M+ RGAL P + IK+
Sbjct: 189 IAKV--KNAINIPVIANGEIWNLEDAIK----CREISGCTDLMVGRGALTIPNLGQVIKQ 242
Query: 421 QRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSY 466
+ ++ E I+ + F E G DK R + +WL Y
Sbjct: 243 ESD-NMPWLEVRAILSAYTEF--ETHG-DKSKYYCNR--IKQWLKY 282
>TIGR_CMR|CPS_0906 [details] [associations]
symbol:CPS_0906 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI RefSeq:YP_267655.1
ProteinModelPortal:Q487W0 STRING:Q487W0 DNASU:3523360
GeneID:3523360 KEGG:cps:CPS_0906 PATRIC:21465097
BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 202 (76.2 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 68/226 (30%), Positives = 110/226 (48%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
VQ+ G YP+ +A + + + ID+N GCP V GS LL P + II+A
Sbjct: 71 VQLLGQYPEYMAENAAKVIELGSSG-IDLNFGCPSKTVNKSRGGSILLKDPENLYQIIKA 129
Query: 306 TSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY 363
V D ++ K+R GY + I++ A + GA+ +T+H RT+ + Y A W +
Sbjct: 130 VKEAVPSDTIVSAKIRLGYEDKTLAIENGQA-VEAAGANELTIHARTKLEGYKPPAHWHW 188
Query: 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC---MIARGALIKPWIFTEIKE 420
I + K + ++ V+ NG+I++ D K C E++ C M+ RGAL P + IK+
Sbjct: 189 IAKV--KNAINIPVIANGEIWNLEDAIK----CREISGCTDLMVGRGALTIPNLGQVIKQ 242
Query: 421 QRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSY 466
+ ++ E I+ + F E G DK R + +WL Y
Sbjct: 243 ESD-NMPWLEVRAILSAYTEF--ETHG-DKSKYYCNR--IKQWLKY 282
>POMBASE|SPCC777.15 [details] [associations]
symbol:SPCC777.15 "tRNA dihydrouridine synthase Dus4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISO] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
PomBase:SPCC777.15 GO:GO:0005739 EMBL:CU329672
GenomeReviews:CU329672_GR Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 PANTHER:PTHR11082
KO:K05545 OMA:AGPMVRY PIR:T11721 RefSeq:NP_588262.1
ProteinModelPortal:O74553 STRING:O74553 EnsemblFungi:SPCC777.15.1
GeneID:2538996 KEGG:spo:SPCC777.15 OrthoDB:EOG4PZNGJ
NextBio:20800171 Uniprot:O74553
Length = 326
Score = 203 (76.5 bits), Expect = 9.0e-14, P = 9.0e-14
Identities = 63/229 (27%), Positives = 100/229 (43%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ LPFR++ + D+ M + L + + + L +Q
Sbjct: 25 APMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRYFDFSTNDADASLI-LQFGVD 83
Query: 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD 311
P L + +L+ VD I IN GCP + +G GS LL +P ++ ++ A T+
Sbjct: 84 DPVILEKAAQLVGPY--VDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKSTLG 141
Query: 312 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKA 371
+ +V+ + N+ L+ I GA +TVHGRTRQ R S + D I + +
Sbjct: 142 ESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDRSSFPVNLDAIREV--RP 199
Query: 372 SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 420
+ V+ NGD+ S L + E M ARG L P +F +E
Sbjct: 200 CVQIPVVANGDVKS-LRKGLEIAKYTETQGIMSARGLLENPALFAGYEE 247
>UNIPROTKB|K7EMI3 [details] [associations]
symbol:K7EMI3 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 EMBL:AC011499 PANTHER:PTHR11082
Ensembl:ENST00000586012 Uniprot:K7EMI3
Length = 77
Score = 187 (70.9 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 35/48 (72%), Positives = 40/48 (83%)
Query: 464 LSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRI 511
LS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRI
Sbjct: 1 LSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRI 48
>TAIR|locus:2155528 [details] [associations]
symbol:AT5G67220 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:CP002688 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AB020742
HOGENOM:HOG000203649 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 UniGene:At.66656 UniGene:At.9615 EMBL:AY049299
EMBL:AY102157 IPI:IPI00528780 RefSeq:NP_201523.1
ProteinModelPortal:Q9FH91 SMR:Q9FH91 STRING:Q9FH91 PRIDE:Q9FH91
EnsemblPlants:AT5G67220.1 GeneID:836857 KEGG:ath:AT5G67220
TAIR:At5g67220 InParanoid:Q9FH91 OMA:VERAWAH PhylomeDB:Q9FH91
ProtClustDB:CLSN2686916 Genevestigator:Q9FH91 Uniprot:Q9FH91
Length = 423
Score = 204 (76.9 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 68/239 (28%), Positives = 109/239 (45%)
Query: 153 TADTQPAA--KIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLG 210
T DT PA+ +L + + KKL R K +AP+ LPFR +C+ G
Sbjct: 54 TVDTAPASLGSPSRVLSIDTRVERAWAHWKKL--GRPKYIVAPMVDNSELPFRLLCQKYG 111
Query: 211 ADVTCGEMA---MCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQC 267
A M + T + + E+ + LF VQ C PDTL + ++ C
Sbjct: 112 AQAAYTPMLHSRIFTETEKYRNQEFTTCKE--DRPLF-VQFCANDPDTLLEAAKRVEPYC 168
Query: 268 TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT-GYFEGK 326
D++DIN+GCP I G+ L+ +K ++E + ++ P++ K+R E
Sbjct: 169 --DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDT 226
Query: 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGDI 383
+ ++ D G S + VHGRTR ++ K ADW I + K + + VL NG++
Sbjct: 227 LKYAKMLEDAG---CSLLAVHGRTRDEKDGKKFRADWSAIKEV--KNAMRIPVLANGNV 280
>UNIPROTKB|P33371 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U00007
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 PIR:C64982
RefSeq:NP_416645.1 RefSeq:YP_490379.1 ProteinModelPortal:P33371
SMR:P33371 DIP:DIP-12808N IntAct:P33371 PRIDE:P33371
EnsemblBacteria:EBESCT00000002162 EnsemblBacteria:EBESCT00000017846
GeneID:12931463 GeneID:945458 KEGG:ecj:Y75_p2102 KEGG:eco:b2140
PATRIC:32119623 EchoBASE:EB1957 EcoGene:EG12022
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI ProtClustDB:PRK10550
BioCyc:EcoCyc:EG12022-MONOMER BioCyc:ECOL316407:JW2128-MONOMER
BioCyc:MetaCyc:EG12022-MONOMER Genevestigator:P33371 Uniprot:P33371
Length = 315
Score = 199 (75.1 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 74/242 (30%), Positives = 117/242 (48%)
Query: 237 RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP 296
R S L VQ+ G +P LA + + +D+N GCP V G G+ LL P
Sbjct: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVELGSWG-VDLNCGCPSKTVNGSGGGATLLKDP 116
Query: 297 MRM----KGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHGRTR 351
+ K + EA + P+++KVR G+ G+ + + IAD + GA+ + VHGRT+
Sbjct: 117 ELIYQGAKAMREAVPAHL--PVSVKVRLGWDSGEKKFE--IADAVQQAGATELVVHGRTK 172
Query: 352 QQRY-SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC---MIARG 407
+Q Y ++ DW I ++ + + V+ NG+I+ DW + C ++ C MI RG
Sbjct: 173 EQGYRAEHIDWQAIGDIRQRLN--IPVIANGEIW---DWQSAQQ-CMAISGCDAVMIGRG 226
Query: 408 ALIKPWIFTEIK--EQRH-WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWL 464
AL P + +K E R W E + +++ + R LE G D R + +WL
Sbjct: 227 ALNIPNLSRVVKYNEPRMPWP----EVVALLQKYTR--LEKQG-DTGLYHVAR--IKQWL 277
Query: 465 SY 466
SY
Sbjct: 278 SY 279
>UNIPROTKB|E2RKU2 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AAEX03004122 RefSeq:XP_546866.3
ProteinModelPortal:E2RKU2 Ensembl:ENSCAFT00000032371 GeneID:489746
KEGG:cfa:489746 NextBio:20862882 Uniprot:E2RKU2
Length = 493
Score = 205 (77.2 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 77/257 (29%), Positives = 113/257 (43%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMCTNLLQGQAS-------- 230
+ KL LAP+ VG LP R + GAD+ C E M C ++ S
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69
Query: 231 EWALLR---RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 287
E + R R S +F + A D +L++ V ID+NMGCP + G
Sbjct: 70 ERVVFRTCEREQSRVVFQMGTSDA--DRALAVAKLVEND--VAGIDVNMGCPKEYSTKGG 125
Query: 288 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347
G+ LL+ P +++ I+ + +P+T K+R SL+ I G +AVTVH
Sbjct: 126 MGAALLSDPDKIEKILSTLVKGIRRPVTCKIRI--LPSLEDTLSLVKRIERTGIAAVTVH 183
Query: 348 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD----IYSYLDWNKHKSDCPELASCM 403
GR R++R + I A S + V+ NG I YLD + +S M
Sbjct: 184 GRKREERPQHPVSCEAIKAIAETVS--IPVIANGGSHDHIQKYLDIEDFRQ-ATAASSVM 240
Query: 404 IARGALIKPWIFTEIKE 420
+AR A+ P IF +KE
Sbjct: 241 VARAAMWNPSIF--LKE 255
>ZFIN|ZDB-GENE-040801-233 [details] [associations]
symbol:dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
ZFIN:ZDB-GENE-040801-233 Gene3D:3.20.20.70 GO:GO:0050660
HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
CTD:11062 HOVERGEN:HBG053313 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:BX072538 IPI:IPI00487005
RefSeq:NP_001003490.2 UniGene:Dr.89736 Ensembl:ENSDART00000130623
GeneID:445096 KEGG:dre:445096 InParanoid:Q5RIX6 NextBio:20831860
Uniprot:Q5RIX6
Length = 307
Score = 197 (74.4 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 67/244 (27%), Positives = 110/244 (45%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FR + + DV M + + ++ + + + ++ VQ
Sbjct: 21 APMVRYSKLAFRTLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTTNKNDRPLIVQFAAK 80
Query: 252 YPDTLARTVELIDQQCTV----DFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 307
TLA D C V D +D+N GCP +++G G+CL+ KP +K ++
Sbjct: 81 DAQTLA------DAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMVRHVR 134
Query: 308 GTVDKP---ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 364
+D P ++IK+R + + + +D L + G S +TVHGRT +R+ + +D I
Sbjct: 135 NQIDNPNYAVSIKIRI-HKDVRQTVD-LCQKVEAAGVSYITVHGRTAIERHQPV-HYDTI 191
Query: 365 YQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE---Q 421
K S + V+ NGDI S D + + M ARG L P +F+ +E Q
Sbjct: 192 KTI--KDSLSIPVIANGDIKSMQDVEA-VCELTGVDGVMSARGLLSNPAMFSGFEETPLQ 248
Query: 422 RHWD 425
WD
Sbjct: 249 CVWD 252
>DICTYBASE|DDB_G0278803 [details] [associations]
symbol:dus1l "tRNA-dihydrouridine synthase 1-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0278803 GO:GO:0005634 Gene3D:3.20.20.70
GenomeReviews:CM000152_GR GO:GO:0050660 EMBL:AAFI02000024
eggNOG:COG0042 KO:K05542 GO:GO:0017150 PANTHER:PTHR11082
RefSeq:XP_641974.1 ProteinModelPortal:Q54XQ6 STRING:Q54XQ6
EnsemblProtists:DDB0238071 GeneID:8621706 KEGG:ddi:DDB_G0278803
OMA:QIARRGN Uniprot:Q54XQ6
Length = 435
Score = 201 (75.8 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 63/234 (26%), Positives = 100/234 (42%)
Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQ 247
K +AP+ L FR +C+ GAD+ M N + + VQ
Sbjct: 53 KKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWSTCPEDRPLVVQ 112
Query: 248 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 307
CG P+ + + + I+ C D ID+N+GCP I GS LL KP + I++
Sbjct: 113 FCGNEPEWVVKAAKYIEDHC--DAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQELH 170
Query: 308 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWDYIY 365
+ PI K+R + L + G +T+HGRT++Q+ S +A+W I
Sbjct: 171 KHIKVPIFCKIRL--LPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKGHNSGIANWKAIR 228
Query: 366 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419
+ S + V+ NG + Y D ++ + M A G L P F+ +K
Sbjct: 229 TIREQLS--IPVIANGSVVQYEDIDRCLEETGA-DGVMSAEGILANPSFFSGLK 279
>WB|WBGene00013201 [details] [associations]
symbol:Y54E5A.6 species:6239 "Caenorhabditis elegans"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
EMBL:AL032643 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OMA:TMTKYVV PIR:T27160
RefSeq:NP_493554.1 UniGene:Cel.16372 ProteinModelPortal:Q9XWJ9
SMR:Q9XWJ9 PaxDb:Q9XWJ9 EnsemblMetazoa:Y54E5A.6 GeneID:173331
KEGG:cel:CELE_Y54E5A.6 UCSC:Y54E5A.6 CTD:173331 WormBase:Y54E5A.6
InParanoid:Q9XWJ9 NextBio:879203 Uniprot:Q9XWJ9
Length = 436
Score = 200 (75.5 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 71/248 (28%), Positives = 113/248 (45%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG-QASEWAL--LRRHSSE 241
+R K LAP+ G P R +C GAD+ E + L++ + AL + + +
Sbjct: 5 YRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDYRNGD 64
Query: 242 DLF--------G---VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGS 290
D+ G +QI + A+ +++ V ID+NMGCP ++ G G+
Sbjct: 65 DIILRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDD--VAGIDVNMGCPKPFSIHCGMGA 122
Query: 291 CLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRT 350
LLT+ ++ I+ + P+T K+R + L+ +I SA+ VHGR
Sbjct: 123 ALLTQTEKIVDILTSLKSAAKVPVTCKIRV--LDDPEDTLKLVQEIEKCRVSALGVHGRR 180
Query: 351 RQQRYSKLADWDYIYQCARKASDDLQVLGNG---DIYSYLDWNKHKSDCPELASCMIARG 407
R +R D I A+ A + V+ NG +I Y D+ K++ E +S MIAR
Sbjct: 181 RDERQPDKCRIDEIRDVAQ-AVQSIPVISNGLSDEIEQYSDFEKYQL-LTETSSTMIARK 238
Query: 408 ALIKPWIF 415
AL P IF
Sbjct: 239 ALSTPSIF 246
>SGD|S000004397 [details] [associations]
symbol:DUS4 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=ISS;IMP] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000004397 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006945
EMBL:U19729 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 OrthoDB:EOG4PZNGJ EMBL:AY558586
PIR:S55961 RefSeq:NP_013509.1 ProteinModelPortal:Q06063 SMR:Q06063
IntAct:Q06063 STRING:Q06063 PaxDb:Q06063 EnsemblFungi:YLR405W
GeneID:851121 KEGG:sce:YLR405W CYGD:YLR405w
BioCyc:MetaCyc:MONOMER-16679 NextBio:967845 Genevestigator:Q06063
GermOnline:YLR405W Uniprot:Q06063
Length = 367
Score = 193 (73.0 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 60/241 (24%), Positives = 104/241 (43%)
Query: 182 LIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALL 235
+I R+K + P+T G LPFR++C+ D+ M + ++ + + + L
Sbjct: 28 IIKTRQKTHGRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDL 87
Query: 236 RRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTK 295
++ + VQ+ L + VE++ C D I IN GCPI + +G G L+
Sbjct: 88 STNNEDTPLIVQVGVNNVADLLKFVEMVAPYC--DGIGINCGCPIKEQIREGIGCALIYN 145
Query: 296 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRY 355
+ ++ A + I+ + E + L + G +T+HGRTR+ R
Sbjct: 146 SDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRS 205
Query: 356 SKLADWDYIYQCARKASD-DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 414
S+ A+ D I SD ++ V+ NGD + D + + M RG L P +
Sbjct: 206 SQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERI-TKYTGAHGVMAVRGLLSNPAL 264
Query: 415 F 415
F
Sbjct: 265 F 265
>UNIPROTKB|F1NHN2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine synthase" species:9031
"Gallus gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 OMA:AGPMVRY GeneTree:ENSGT00550000074907
EMBL:AC147596 IPI:IPI00813011 Ensembl:ENSGALT00000039460
Uniprot:F1NHN2
Length = 307
Score = 187 (70.9 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 61/234 (26%), Positives = 105/234 (44%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FR + + G D+ M + + ++ + + + ++ VQ
Sbjct: 20 APMVRYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTTNRGDNPLIVQFAAK 79
Query: 252 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310
L L+ C D +D+N GCP + +G G+CL+ KP ++ ++ +
Sbjct: 80 EAQVLCDAALLV---CPFADGVDLNCGCPQRWAMAEGYGACLINKPELVRDMVRHVRNQI 136
Query: 311 DKP---ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 367
D P ++IK+R + + K +D L G S +TVHGR ++R+ + +D I
Sbjct: 137 DNPRFSVSIKIRI-HEDLKKTVD-LCKKAEATGVSWITVHGRNIEERHQPV-HYDAIKVI 193
Query: 368 ARKASDDLQVLGNGDIYSYLDW-NKHKSDCPELASCMIARGALIKPWIFTEIKE 420
K S + V+ NGDI + D N H + M+ARG L P +F +E
Sbjct: 194 --KESIHIPVVANGDIKTLKDAENVHHLTGAD--GVMVARGLLANPAMFAGYEE 243
>POMBASE|SPBC36B7.04 [details] [associations]
symbol:SPBC36B7.04 "tRNA dihydrouridine synthase Dus1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006400 "tRNA modification" evidence=ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PomBase:SPBC36B7.04 GO:GO:0005739
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:NP_595986.1
ProteinModelPortal:Q9HGN6 STRING:Q9HGN6 EnsemblFungi:SPBC36B7.04.1
GeneID:2541048 KEGG:spo:SPBC36B7.04 OMA:RCQPYFR OrthoDB:EOG480N5B
NextBio:20802162 Uniprot:Q9HGN6
Length = 399
Score = 190 (71.9 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 66/250 (26%), Positives = 112/250 (44%)
Query: 172 SLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE 231
S K H R+ R K LAP+ LP+R + + GAD+ C M + L G++ +
Sbjct: 3 SKKLHGRDFYNKIGRPKRILAPMVDQSELPWRILARRSGADL-CYS-PMFHSRLFGESED 60
Query: 232 WA----LLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 287
+ R E +Q CG P+ + + ++ C D +D+N+GCP I
Sbjct: 61 YRNKVFSTRTIPEERPLIIQFCGNDPEIMLKAAKIAAPYC--DAVDVNLGCPQGIAKKGK 118
Query: 288 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347
GS L ++ II + P+T K+R + + + +D + GAS + VH
Sbjct: 119 YGSFLQENWNLIESIITKLHTELSIPVTAKIRI-FPDPQKTLDYAKMILKA-GASILAVH 176
Query: 348 GRTRQQR--YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405
GR R+Q+ ++ +ADW+ I + + + NG+I D ++ + + A
Sbjct: 177 GRLREQKGHFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIK-YTGVDGVLSA 235
Query: 406 RGALIKPWIF 415
G+L P IF
Sbjct: 236 EGSLYNPRIF 245
>UNIPROTKB|Q607T6 [details] [associations]
symbol:MCA1669 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:YP_114112.1
ProteinModelPortal:Q607T6 GeneID:3102115 KEGG:mca:MCA1669
PATRIC:22607174 Uniprot:Q607T6
Length = 360
Score = 188 (71.2 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 67/289 (23%), Positives = 122/289 (42%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVTC-GEMAMCTNLLQGQASEWALLRRHSSEDL 243
FR +L +AP+ + R +++ EM +L G LL H +E
Sbjct: 26 FRHRLSVAPMMDWTDRHCRFFLRLISRHTLLYTEMVTTAAILHGDRER--LLGFHPAEHP 83
Query: 244 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGII 303
+Q+ G+ P+ LA ++ + + D +++N+GCP V G+CL+ +P R+ +
Sbjct: 84 LAIQLGGSDPEALAECAKIAEFR-GFDEVNLNVGCPSPRVQTGRFGACLMAEPERVADCV 142
Query: 304 EATSGTVDKPITIKVRTGYFEGKNRIDSL--IADIGTWGASAVTVHGRT--------RQQ 353
A V P+T+K R G + + D L + + G VH R ++
Sbjct: 143 RAMCEAVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAEAGCRTFIVHARKAWLQGLSPKEN 202
Query: 354 RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413
R + +D + + + +L ++ NG I + + +H S C + MI R A P+
Sbjct: 203 RQTPPLRYDVVRRL-KSELPELAIVLNGGIQTLDEAERHLSWCDGV---MIGRAAYHNPY 258
Query: 414 IFTEIKEQ--RHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFL 460
+ E + H D+ R +++DF + + TRH L
Sbjct: 259 LLAEADRRCYGHSDVRPRTREEVIEDFMPYVRNELSKGSRLHALTRHIL 307
>POMBASE|SPBC1709.06 [details] [associations]
symbol:dus2 "tRNA dihydrouridine synthase Dus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=ISO] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PomBase:SPBC1709.06 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CU329671 GenomeReviews:CU329671_GR
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05543 PIR:T39634
RefSeq:NP_595439.1 ProteinModelPortal:O74731 STRING:O74731
EnsemblFungi:SPBC1709.06.1 GeneID:2540200 KEGG:spo:SPBC1709.06
OMA:LVERICD OrthoDB:EOG4PG98M NextBio:20801332 Uniprot:O74731
Length = 479
Score = 167 (63.8 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 51/172 (29%), Positives = 81/172 (47%)
Query: 221 CTNLLQGQASEWALLRRHSSE-DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCP 279
C + ++ +++ L R H E + Q+ A P+ +L+ V ID+N GCP
Sbjct: 61 CIDFVKPPSNK-VLFRVHPLEANRLIFQLGSASPELAVEAAKLVAND--VAGIDLNCGCP 117
Query: 280 IDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP--ITIKVRTGYFEGKNRIDSLIADIG 337
V+ G G+ LL R+ I++A + KP I+I + E K L+ I
Sbjct: 118 KHFSVHAGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERIC 177
Query: 338 TWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD-DLQVLGNGDIYSYLD 388
G A+TVH RT R ++ AD Y+ + + D+ +L NGD+ SY D
Sbjct: 178 DTGVRAITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNGDVLSYND 229
Score = 69 (29.3 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 182 LIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE 231
L+++ K+ LAP+ +G LP R + GA++ G + LL G E
Sbjct: 3 LLNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVE 52
>UNIPROTKB|Q884C6 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016853
GenomeReviews:AE016853_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
RefSeq:NP_791991.1 ProteinModelPortal:Q884C6 GeneID:1183820
KEGG:pst:PSPTO_2169 PATRIC:19995624 OMA:EWIARIQ
ProtClustDB:CLSK867771 BioCyc:PSYR223283:GJIX-2214-MONOMER
Uniprot:Q884C6
Length = 317
Score = 185 (70.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 49/175 (28%), Positives = 80/175 (45%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
+Q+ G+ P LA + +D+N GCP V G+ LL +P + I+
Sbjct: 67 LQLLGSDPVCLAENAAFACE-LGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLHTIVSQ 125
Query: 306 TSGTVDK--PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY 363
V K P+T K+R GY +D A + GA+ + VH RT+ Y A W++
Sbjct: 126 VRRAVPKDIPVTAKMRLGYENTDGALDCARA-LADGGAAQIVVHARTKVDGYKPPAHWEW 184
Query: 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418
I + + V+ NG+I++ DW + + C MI RG + +P + +I
Sbjct: 185 IARIQEVVK--VPVVANGEIWTVEDWRRCREICGA-RDIMIGRGLVARPDLARQI 236
>UNIPROTKB|Q0VC60 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:DAAA02046690 EMBL:BC120342
IPI:IPI00715355 RefSeq:NP_001068887.1 UniGene:Bt.15762 SMR:Q0VC60
STRING:Q0VC60 Ensembl:ENSBTAT00000019500 GeneID:509795
KEGG:bta:509795 InParanoid:Q0VC60 NextBio:20869132 Uniprot:Q0VC60
Length = 493
Score = 188 (71.2 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 75/257 (29%), Positives = 112/257 (43%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMCTNLLQGQAS-------- 230
+ KL LAP+ VG LP R + GAD+ C E M C ++ S
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELVDLKMLQCKRVVNEALSTVDFVAPD 69
Query: 231 EWALLR---RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 287
+ + R R S+ +F + A LA L++ V ID+NMGCP + G
Sbjct: 70 DRVVFRTCEREQSKVVFQMGTSDA-ERALA-VARLVEND--VAGIDVNMGCPKEYSTKGG 125
Query: 288 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347
G+ LL+ P +++ I+ +P+T K+R SL+ I G +A+ VH
Sbjct: 126 MGAALLSDPDKIEKILSTLVKGTRRPVTCKIRI--LPSLEDTLSLVKRIERTGIAAIAVH 183
Query: 348 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD----IYSYLDWNKHKSDCPELASCM 403
GR R++R + I A S + V+ NG I YLD + +S M
Sbjct: 184 GRKREERPQHPVSCEAIKAIAETLS--IPVIANGGSHDHIQGYLDIEDFRR-ATAASSVM 240
Query: 404 IARGALIKPWIFTEIKE 420
+AR A+ P IF +KE
Sbjct: 241 VARAAMWNPSIF--LKE 255
>UNIPROTKB|I3LES5 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:FP565347 RefSeq:XP_003355825.1
Ensembl:ENSSSCT00000028203 GeneID:100621573 KEGG:ssc:100621573
Uniprot:I3LES5
Length = 493
Score = 188 (71.2 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 74/257 (28%), Positives = 112/257 (43%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMCTNLLQGQAS-------- 230
+ KL LAP+ VG LP R + GAD+ C E M C ++ S
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTVDFVAPD 69
Query: 231 EWALLR---RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 287
+ + R R S +F + A LA +L++ V ID+NMGCP + G
Sbjct: 70 DRVVFRTCEREQSRVVFQMGTSDA-ERALA-VAKLVEND--VAGIDVNMGCPKEYSTKGG 125
Query: 288 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347
G+ LL+ P +++ I+ +P+T K+R SL+ I G +A+ VH
Sbjct: 126 MGAALLSDPDKIEKILSTLVKGTRRPVTCKIRL--LPSLEDTLSLVKRIERTGIAAIAVH 183
Query: 348 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD----IYSYLDWNKHKSDCPELASCM 403
GR R++R + I A S + V+ NG I YLD + +S M
Sbjct: 184 GRKREERPQHPVSCEAIKAIAETLS--IPVIANGGSHDHIQKYLDIEDFRQ-ATAASSVM 240
Query: 404 IARGALIKPWIFTEIKE 420
+AR A+ P +F +KE
Sbjct: 241 VARAAMWNPSVF--LKE 255
>UNIPROTKB|Q8EFG7 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 181 (68.8 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 63/237 (26%), Positives = 105/237 (44%)
Query: 246 VQICGAYPDTLA----RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 301
VQ+ G P+ +A R +EL +D N GCP +V G+ LL P +
Sbjct: 67 VQLLGQEPNCMAENAMRAIELGSHG-----VDANFGCPAKMVNRSNGGAVLLQYPNTIHD 121
Query: 302 IIEATSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 359
I+ A V + P+T K+R GY + +++ +A + GA+ + +H R++ Y A
Sbjct: 122 IVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALA-VYEAGATELAIHARSKVDGYKPPA 180
Query: 360 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD-CPELASC---MIARGALIKPWIF 415
W+YI + + + V+ NG+I WN+ + C ++ C MI RGA+ P +
Sbjct: 181 YWEYITEVRERLP--IPVIANGEI-----WNRDDAKRCMQVTGCDSIMIGRGAISLPNLA 233
Query: 416 TEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIP 472
IK + + L +M + + L SD + +W SY R P
Sbjct: 234 DTIKTGAT-PYSWADTLQLMLSYTQRELSGRKSDYYPAR-----IKQWFSYLNRQYP 284
>TIGR_CMR|SO_2006 [details] [associations]
symbol:SO_2006 "NifR3/Smm1 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 181 (68.8 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 63/237 (26%), Positives = 105/237 (44%)
Query: 246 VQICGAYPDTLA----RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 301
VQ+ G P+ +A R +EL +D N GCP +V G+ LL P +
Sbjct: 67 VQLLGQEPNCMAENAMRAIELGSHG-----VDANFGCPAKMVNRSNGGAVLLQYPNTIHD 121
Query: 302 IIEATSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 359
I+ A V + P+T K+R GY + +++ +A + GA+ + +H R++ Y A
Sbjct: 122 IVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALA-VYEAGATELAIHARSKVDGYKPPA 180
Query: 360 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD-CPELASC---MIARGALIKPWIF 415
W+YI + + + V+ NG+I WN+ + C ++ C MI RGA+ P +
Sbjct: 181 YWEYITEVRERLP--IPVIANGEI-----WNRDDAKRCMQVTGCDSIMIGRGAISLPNLA 233
Query: 416 TEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIP 472
IK + + L +M + + L SD + +W SY R P
Sbjct: 234 DTIKTGAT-PYSWADTLQLMLSYTQRELSGRKSDYYPAR-----IKQWFSYLNRQYP 284
>MGI|MGI:1913619 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like (SMM1, S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 MGI:MGI:1913619 GO:GO:0005783
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580 HOVERGEN:HBG079551
KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W EMBL:AK009391 EMBL:BC058431
IPI:IPI00110119 RefSeq:NP_079794.1 UniGene:Mm.287500 PDB:1WHN
PDBsum:1WHN ProteinModelPortal:Q9D7B1 SMR:Q9D7B1 STRING:Q9D7B1
PhosphoSite:Q9D7B1 PaxDb:Q9D7B1 PRIDE:Q9D7B1
Ensembl:ENSMUST00000034375 GeneID:66369 KEGG:mmu:66369
GeneTree:ENSGT00550000075019 InParanoid:Q9D7B1
EvolutionaryTrace:Q9D7B1 NextBio:321469 Bgee:Q9D7B1
Genevestigator:Q9D7B1 GermOnline:ENSMUSG00000031901 Uniprot:Q9D7B1
Length = 493
Score = 184 (69.8 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 70/251 (27%), Positives = 108/251 (43%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMCTNLLQGQAS-------- 230
+ KL LAP+ VG LP R + GAD+ C E M C ++ S
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69
Query: 231 EWALLR---RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 287
+ + R R S +F + A LA L++ V ID+NMGCP + G
Sbjct: 70 DRVVFRTCEREQSRVVFQMGTSDA-ERALA-VARLVEND--VAGIDVNMGCPKEYSTKGG 125
Query: 288 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347
G+ LL+ P +++ I+ +P+T K+R +L+ I G SA+ VH
Sbjct: 126 MGAALLSDPDKIEKILSTLVKGTHRPVTCKIRI--LPSLEDTLNLVKRIERTGISAIAVH 183
Query: 348 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL---ASCMI 404
GR R +R + I A S + V+ NG + ++ + D + +S M+
Sbjct: 184 GRNRDERPQHPVSCEVIRAIAETLS--IPVIANGGSHDHIQQHVDIEDFRQATAASSVMV 241
Query: 405 ARGALIKPWIF 415
AR A+ P IF
Sbjct: 242 ARAAMWNPSIF 252
>RGD|1305612 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 RGD:1305612
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 EMBL:CH473972 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:BC158728 IPI:IPI00363521
RefSeq:NP_001099651.1 UniGene:Rn.18304 SMR:B0BN89 STRING:B0BN89
Ensembl:ENSRNOT00000026827 GeneID:291978 KEGG:rno:291978
UCSC:RGD:1305612 NextBio:633545 Genevestigator:B0BN89
Uniprot:B0BN89
Length = 493
Score = 184 (69.8 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 70/251 (27%), Positives = 108/251 (43%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMCTNLLQGQAS-------- 230
+ KL LAP+ VG LP R + GAD+ C E M C ++ S
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLSTVDFVAPD 69
Query: 231 EWALLR---RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 287
+ + R R S +F + A LA L++ V ID+NMGCP + G
Sbjct: 70 DRVVFRTCEREQSRVVFQMGTSDA-ERALA-VARLVEND--VAGIDVNMGCPKEYSTKGG 125
Query: 288 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347
G+ LL+ P +++ I+ +P+T K+R +L+ I G SA+ VH
Sbjct: 126 MGAALLSDPDKIEKILSTLVKGTHRPVTCKIRI--LPSLEDTLNLVKRIERTGISAIAVH 183
Query: 348 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL---ASCMI 404
GR R +R + I A S + V+ NG + ++ + D + +S M+
Sbjct: 184 GRNRDERPQHPVSCEVIRAIAETLS--IPVIANGGSHDHIQQHLDIEDFRQATAASSVMV 241
Query: 405 ARGALIKPWIF 415
AR A+ P IF
Sbjct: 242 ARAAMWNPSIF 252
>DICTYBASE|DDB_G0277081 [details] [associations]
symbol:DDB_G0277081 "tRNA-dihydrouridine synthase A"
species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
dictyBase:DDB_G0277081 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000019 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 RefSeq:XP_642936.1 ProteinModelPortal:Q86L21
EnsemblProtists:DDB0217898 GeneID:8620805 KEGG:ddi:DDB_G0277081
InParanoid:Q86L21 OMA:PIVAQFF Uniprot:Q86L21
Length = 392
Score = 180 (68.4 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 62/242 (25%), Positives = 114/242 (47%)
Query: 191 LAPLTTVGNLPFR-RVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQI 248
LAP+ V ++ FR + +G +V E L + + + L + E Q
Sbjct: 15 LAPMADVTDISFRFLLANCMGKPNVIFNEFVSADGLARNREALIDKLGYSTQEKPIVAQF 74
Query: 249 CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN--KGAGSCLLTKPMRMKGIIEAT 306
G P+ + ++ ++ D +DINMGCP V++ + +G+ L+T P K I++ T
Sbjct: 75 FGNKPEYFYESAKIANE-LGYDGVDINMGCPSRKVLSPKQASGAALITNPSLAKEIVKIT 133
Query: 307 SGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY- 363
+ +KP+++K R G+ K ID I I + +T+H RT+++ A W++
Sbjct: 134 KEALNFEKPVSVKTRIGF--DKIEIDEWIPLILESEPACLTLHLRTKKELSLVPAHWEHQ 191
Query: 364 ----IYQCARKASDDLQVLGNGDIYSY---LDW-NKHKSDCPELASCMIARGALIKPWIF 415
+ + + S + ++GNGD+ +Y +D+ N+ D MI R PW+F
Sbjct: 192 VLDRVVELRNQISPNTLLVGNGDVETYEQGIDYINQFGID-----GVMIGRAVYGNPWLF 246
Query: 416 TE 417
+
Sbjct: 247 NK 248
>CGD|CAL0004455 [details] [associations]
symbol:orf19.1404 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0004455 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_714575.1
RefSeq:XP_714669.1 ProteinModelPortal:Q59YC2 STRING:Q59YC2
GeneID:3643687 GeneID:3643817 KEGG:cal:CaO19.1404
KEGG:cal:CaO19.8982 Uniprot:Q59YC2
Length = 467
Score = 178 (67.7 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 75/295 (25%), Positives = 130/295 (44%)
Query: 169 TDGS-LKTHSREKKLIDF--REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL 225
TD + +KT ++L + + K +AP+ L +R + + GA + C L
Sbjct: 37 TDSAFVKTKLTGRQLYNAIGQPKTIVAPMVDQSELAWRILSRRYGAQL-CYTPMFHAKLF 95
Query: 226 QGQA----SEWALLRRHSSEDL---FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGC 278
Q S W ++DL VQ C PD L + +LI+ +C D ID+N+GC
Sbjct: 96 ATQEKYRNSMWTT-NLDGNKDLDRPLVVQFCANDPDYLLQAAKLIENEC--DAIDLNLGC 152
Query: 279 PIDIVVNKGA-GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY--FEGKNRIDSLIAD 335
P I KG G+ L+ + +I+ + P+T K+R Y +E + ++ D
Sbjct: 153 PQGIA-RKGKYGAFLMDDWDLVYKLIKNLHDNLSIPVTAKIRI-YDDYEKSLKYAKMVLD 210
Query: 336 IGTWGASAVTVHGRTRQQR--YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK 393
G A +TVHGRTR+ + + LA+W + D NG+I D + +
Sbjct: 211 AG---AQFITVHGRTREMKGQATGLANWKILKYLRDNLPQDQVFFSNGNILYPSDIQRCQ 267
Query: 394 SDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 448
S+ + M A G L P +F + + + ++ I++++ E++ S
Sbjct: 268 SETA-CDAVMSAEGNLYNPGVFWTLDDNKDKQFPRVDK--ILREYFEIVKENYDS 319
>UNIPROTKB|Q9NX74 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005783
GO:GO:0005739 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:CH471092 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AB101210
EMBL:AK000406 EMBL:AK290578 EMBL:BC006527 IPI:IPI00015804
RefSeq:NP_001258691.1 RefSeq:NP_060273.1 UniGene:Hs.534460
ProteinModelPortal:Q9NX74 SMR:Q9NX74 IntAct:Q9NX74 STRING:Q9NX74
PhosphoSite:Q9NX74 DMDM:73620832 PaxDb:Q9NX74 PRIDE:Q9NX74
DNASU:54920 Ensembl:ENST00000358896 Ensembl:ENST00000565263
GeneID:54920 KEGG:hsa:54920 UCSC:uc002evi.3 CTD:54920
GeneCards:GC16P068058 HGNC:HGNC:26014 HPA:HPA042560 HPA:HPA043528
MIM:609707 neXtProt:NX_Q9NX74 PharmGKB:PA142671937
HOGENOM:HOG000195580 HOVERGEN:HBG079551 InParanoid:Q9NX74 KO:K05543
OMA:YHNKLIL OrthoDB:EOG4MW85W PhylomeDB:Q9NX74 GenomeRNAi:54920
NextBio:57992 ArrayExpress:Q9NX74 Bgee:Q9NX74 CleanEx:HS_DUS2L
Genevestigator:Q9NX74 Uniprot:Q9NX74
Length = 493
Score = 178 (67.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 71/254 (27%), Positives = 107/254 (42%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMCTNLLQGQAS-------- 230
+ KL LAP+ VG LP R + GAD+ C E M C ++ S
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 231 EWALLRRHSSEDLFGVQICGAYPDTLARTV-ELIDQQCTVDFIDINMGCPIDIVVNKGAG 289
+ + R E V G A V L++ V ID+NMGCP G G
Sbjct: 70 DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVEND--VAGIDVNMGCPKQYSTKGGMG 127
Query: 290 SCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR 349
+ LL+ P +++ I+ +P+T K+R SL+ I G +A+ VHGR
Sbjct: 128 AALLSDPDKIEKILSTLVKGTRRPVTCKIRI--LPSLEDTLSLVKRIERTGIAAIAVHGR 185
Query: 350 TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL---ASCMIAR 406
R++R + I A S + V+ NG + ++ D + +S M+AR
Sbjct: 186 KREERPQHPVSCEVIKAIADTLS--IPVIANGGSHDHIQQYSDIEDFRQATAASSVMVAR 243
Query: 407 GALIKPWIFTEIKE 420
A+ P IF +KE
Sbjct: 244 AAMWNPSIF--LKE 255
>FB|FBgn0032750 [details] [associations]
symbol:CG10495 species:7227 "Drosophila melanogaster"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AY069347 RefSeq:NP_609939.1
UniGene:Dm.465 SMR:Q9VJ06 STRING:Q9VJ06 EnsemblMetazoa:FBtr0081150
GeneID:35179 KEGG:dme:Dmel_CG10495 UCSC:CG10495-RA
FlyBase:FBgn0032750 InParanoid:Q9VJ06 OrthoDB:EOG4X3FH5
GenomeRNAi:35179 NextBio:792243 Uniprot:Q9VJ06
Length = 396
Score = 174 (66.3 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 58/228 (25%), Positives = 101/228 (44%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FRR+ ++ G + M + ++ + + + + Q
Sbjct: 28 APMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAK 87
Query: 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV- 310
P + +LI VD ID+N GCP + KG G +L +P + +++ T+
Sbjct: 88 DPTEFVTSAQLIYPY--VDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLP 145
Query: 311 -DKPITIKVRT-GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA 368
D +++K+R G E R L + + G + +T+HGRT Q++SK D
Sbjct: 146 GDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSK-DTLDIPAMSQ 204
Query: 369 RKASDDLQVLGNGDIYSYLD-WNKHKSDCPELASCMIARGALIKPWIF 415
+ S + ++ NG++ SY D + H+ A M ARG L P +F
Sbjct: 205 VRQSLQIPLIVNGNVESYRDACDMHEQT--GAAGVMAARGLLANPALF 250
>UNIPROTKB|Q8EAJ0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004653 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 172 (65.6 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 63/259 (24%), Positives = 110/259 (42%)
Query: 173 LKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTC-GEMAMCTNLLQGQASE 231
LK + + K +D +AP+ + +R +++ A+ EM +L G+
Sbjct: 2 LKNNINDSKNLD--RTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD- 58
Query: 232 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 291
L + E +Q+ G+ P LAR +L ++ D +++N+GCP D V N G+C
Sbjct: 59 --YLTYNQEEHPLALQLGGSNPVELARCAKLAAER-GYDEVNLNVGCPSDRVQNGRFGAC 115
Query: 292 LLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNR--IDSLIADIGTWGASAVTVHGR 349
L+ +P + ++A VD P+T+K R G E + + I + G +H R
Sbjct: 116 LMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHAR 175
Query: 350 T--------RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 401
++ R D+D +YQ R L + NG I S H L
Sbjct: 176 KAWLQGLSPKENREIPPLDYDRVYQLKRDYPA-LNISINGGITSLEQAQTHLQ---HLDG 231
Query: 402 CMIARGALIKPWIFTEIKE 420
M+ R A P++ ++ +
Sbjct: 232 VMVGREAYQNPYMLAQVDQ 250
>TIGR_CMR|SO_3912 [details] [associations]
symbol:SO_3912 "TIM-barrel protein, yjbN family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 172 (65.6 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 63/259 (24%), Positives = 110/259 (42%)
Query: 173 LKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTC-GEMAMCTNLLQGQASE 231
LK + + K +D +AP+ + +R +++ A+ EM +L G+
Sbjct: 2 LKNNINDSKNLD--RTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD- 58
Query: 232 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 291
L + E +Q+ G+ P LAR +L ++ D +++N+GCP D V N G+C
Sbjct: 59 --YLTYNQEEHPLALQLGGSNPVELARCAKLAAER-GYDEVNLNVGCPSDRVQNGRFGAC 115
Query: 292 LLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNR--IDSLIADIGTWGASAVTVHGR 349
L+ +P + ++A VD P+T+K R G E + + I + G +H R
Sbjct: 116 LMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHAR 175
Query: 350 T--------RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 401
++ R D+D +YQ R L + NG I S H L
Sbjct: 176 KAWLQGLSPKENREIPPLDYDRVYQLKRDYPA-LNISINGGITSLEQAQTHLQ---HLDG 231
Query: 402 CMIARGALIKPWIFTEIKE 420
M+ R A P++ ++ +
Sbjct: 232 VMVGREAYQNPYMLAQVDQ 250
>WB|WBGene00009452 [details] [associations]
symbol:F36A2.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:Z81077 PIR:T21830
RefSeq:NP_492379.1 UniGene:Cel.26704 ProteinModelPortal:Q9XVN8
SMR:Q9XVN8 STRING:Q9XVN8 PaxDb:Q9XVN8 EnsemblMetazoa:F36A2.2
GeneID:185334 KEGG:cel:CELE_F36A2.2 UCSC:F36A2.2 CTD:185334
WormBase:F36A2.2 InParanoid:Q9XVN8 OMA:YLFASQP NextBio:927896
Uniprot:Q9XVN8
Length = 527
Score = 176 (67.0 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 67/252 (26%), Positives = 102/252 (40%)
Query: 191 LAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG 250
LAP+ L FR + GA +T M + L ++ VQ C
Sbjct: 77 LAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLVVQFCA 136
Query: 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIEATSGT 309
DT L++ C D +D+N+GCP +V +G GS L + + ++ A
Sbjct: 137 NKVDTFLAACRLVEDVC--DGVDLNLGCP-QMVAKRGRYGSWLQDEVDLICEMVSAVRDY 193
Query: 310 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSK--LADWDYIYQC 367
PI+ K+R + + + + GA+ +TVHGRTR + ++ LADW I
Sbjct: 194 CRLPISCKIRVR--DDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETGLADWSRIRDV 251
Query: 368 ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH-WDI 426
+ V+ NG+I D + +A M A G L P IF + W I
Sbjct: 252 VEAVGSRVPVMANGNIQFPGDVERCMQATGAVA-IMSAEGLLYNPLIFDDANAHVDTWKI 310
Query: 427 TSGERLNIMKDF 438
+ E L K F
Sbjct: 311 AA-EYLEYAKKF 321
>UNIPROTKB|E2RRJ8 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AAEX03011212 RefSeq:XP_540383.2
Ensembl:ENSCAFT00000006298 GeneID:483264 KEGG:cfa:483264
Uniprot:E2RRJ8
Length = 317
Score = 170 (64.9 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 59/245 (24%), Positives = 105/245 (42%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FR + + G D+ M + + ++ + + + + VQ
Sbjct: 32 APMVRYSKLAFRTLVRKYGCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFAAN 91
Query: 252 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310
L+ ++ C + IDIN GCP + +G G+CL+ KP ++ +++ V
Sbjct: 92 DARLLSDAARIV---CPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQV 148
Query: 311 DKP-ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR 369
+ P ++ ++ + R L G S +TVHGRT ++R+ + Y+ +
Sbjct: 149 ENPRFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRTVEERHQPVH-----YEAIK 203
Query: 370 --KASDDLQVLGNGDIYSYLD----WNKHKSDCPELASCMIARGALIKPWIFTEIKE--- 420
K + + V+ NGDI S + W+ +D M+ARG L P +F E
Sbjct: 204 IIKENMSIPVIANGDIRSLKEAENVWHITGTD-----GVMVARGLLANPAMFAGYNETPL 258
Query: 421 QRHWD 425
Q WD
Sbjct: 259 QCIWD 263
>UNIPROTKB|O95620 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CH471070 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:U62767 EMBL:AK297195
EMBL:BC111774 IPI:IPI00021410 IPI:IPI00783809 RefSeq:NP_001257348.1
RefSeq:NP_853559.1 UniGene:Hs.97627 ProteinModelPortal:O95620
SMR:O95620 STRING:O95620 PaxDb:O95620 PRIDE:O95620
Ensembl:ENST00000265720 Ensembl:ENST00000402620 GeneID:11062
KEGG:hsa:11062 UCSC:uc003veh.3 CTD:11062 GeneCards:GC07P107203
HGNC:HGNC:21517 HPA:HPA044301 neXtProt:NX_O95620
PharmGKB:PA142671939 HOVERGEN:HBG053313 InParanoid:O95620 KO:K05545
OMA:AGPMVRY OrthoDB:EOG4ZCT4T PhylomeDB:O95620 GenomeRNAi:11062
NextBio:42037 ArrayExpress:O95620 Bgee:O95620 CleanEx:HS_DUS4L
Genevestigator:O95620 GermOnline:ENSG00000105865 Uniprot:O95620
Length = 317
Score = 168 (64.2 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 60/237 (25%), Positives = 105/237 (44%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FR + + D+ M + + ++ + + + + VQ
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAAN 91
Query: 252 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310
L+ ++ C + IDIN GCP + +G G+CL+ KP ++ +++ V
Sbjct: 92 DARLLSDAARIV---CPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQV 148
Query: 311 DKP---ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 367
+ P ++IK+R + + K +D L G S +TVHGRT ++R+ + +D I
Sbjct: 149 ETPGFSVSIKIRI-HDDLKRTVD-LCQKAEATGVSWITVHGRTAEERHQPV-HYDSIKII 205
Query: 368 ARKASDDLQVLGNGDIYSYLD----WNKHKSDCPELASCMIARGALIKPWIFTEIKE 420
S + V+ NGDI S + W +D M+ARG L P +F +E
Sbjct: 206 KENMS--IPVIANGDIRSLKEAENVWRITGTD-----GVMVARGLLANPAMFAGYEE 255
>UNIPROTKB|E1C4F6 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AADN02038196 IPI:IPI00588517
ProteinModelPortal:E1C4F6 Ensembl:ENSGALT00000005388 Uniprot:E1C4F6
Length = 493
Score = 172 (65.6 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 70/254 (27%), Positives = 113/254 (44%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMCTNLLQG--------QAS 230
FR K LAP+ VG LP R + GAD+ C E M C ++ +
Sbjct: 9 FRGKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVVNEILETVDFVAPN 68
Query: 231 EWALLR---RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 287
E + R R +F Q+ A +L++ V IDINMGCP + G
Sbjct: 69 ERVVFRTCERERHRVIF--QMGSADAGRALAVAKLVESD--VAGIDINMGCPKEYSTKGG 124
Query: 288 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347
G+ LL+ P +++ I+ + KP+T K+R ++ +D L+ I G +A+ VH
Sbjct: 125 MGAALLSDPDKIESILTTLVKGICKPVTCKIRI-LPSVEDTVD-LVKRIEKTGIAAIAVH 182
Query: 348 GRT---RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL-DWNKHKS--DCPELAS 401
GR +++R D I + S + V+ NG + ++ ++ ++ +S
Sbjct: 183 GRLERKKEERPQHPVHCDVIKAISEAVS--IPVIANGGSHDFIKEYGDIETFQKATAASS 240
Query: 402 CMIARGALIKPWIF 415
MIAR A+ P IF
Sbjct: 241 VMIARAAMWNPSIF 254
>UNIPROTKB|Q9KT00 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05541 OMA:FYHVARI PIR:D82241 RefSeq:NP_230750.1
ProteinModelPortal:Q9KT00 DNASU:2614375 GeneID:2614375
KEGG:vch:VC1105 PATRIC:20081304 ProtClustDB:CLSK874217
Uniprot:Q9KT00
Length = 323
Score = 167 (63.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 56/225 (24%), Positives = 106/225 (47%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
VQ+ G P +A + + ID+N GCP +V G+ LL P + +++A
Sbjct: 67 VQLLGQDPHWMAENA-IRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQVVKA 125
Query: 306 TSGTVDK--PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLAD--W 361
V P++ K+R G+ + ++ + ++ + A +TVH RT+ Y K ++ W
Sbjct: 126 CRDAVPAHIPVSAKIRLGWEDPEDCFE-IVDAVAQAKADELTVHARTKAGGY-KASEIKW 183
Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421
YI Q +K S + ++ NG++++Y D + + S M+ RGAL P + +K
Sbjct: 184 HYIDQIRQKCS--IPLIANGEVWNYAD-GQACIQTTGVDSLMVCRGALNVPNLGNVVKHN 240
Query: 422 RHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSY 466
H + E ++++ + +F + DK R + +W +Y
Sbjct: 241 -HAAMPWHEVVDLLLRYTQFEVR---GDKGKYYPNR--IKQWFAY 279
>TIGR_CMR|VC_1105 [details] [associations]
symbol:VC_1105 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05541 OMA:FYHVARI
PIR:D82241 RefSeq:NP_230750.1 ProteinModelPortal:Q9KT00
DNASU:2614375 GeneID:2614375 KEGG:vch:VC1105 PATRIC:20081304
ProtClustDB:CLSK874217 Uniprot:Q9KT00
Length = 323
Score = 167 (63.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 56/225 (24%), Positives = 106/225 (47%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
VQ+ G P +A + + ID+N GCP +V G+ LL P + +++A
Sbjct: 67 VQLLGQDPHWMAENA-IRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQVVKA 125
Query: 306 TSGTVDK--PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLAD--W 361
V P++ K+R G+ + ++ + ++ + A +TVH RT+ Y K ++ W
Sbjct: 126 CRDAVPAHIPVSAKIRLGWEDPEDCFE-IVDAVAQAKADELTVHARTKAGGY-KASEIKW 183
Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421
YI Q +K S + ++ NG++++Y D + + S M+ RGAL P + +K
Sbjct: 184 HYIDQIRQKCS--IPLIANGEVWNYAD-GQACIQTTGVDSLMVCRGALNVPNLGNVVKHN 240
Query: 422 RHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSY 466
H + E ++++ + +F + DK R + +W +Y
Sbjct: 241 -HAAMPWHEVVDLLLRYTQFEVR---GDKGKYYPNR--IKQWFAY 279
>SGD|S000004545 [details] [associations]
symbol:DUS1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IMP;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 SGD:S000004545
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006946
EMBL:Z46373 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 PANTHER:PTHR11082 GeneTree:ENSGT00550000075089
OMA:RCQPYFR OrthoDB:EOG480N5B PIR:S48817 RefSeq:NP_013631.1
ProteinModelPortal:P53759 SMR:P53759 IntAct:P53759
MINT:MINT-4083769 STRING:P53759 PaxDb:P53759 PeptideAtlas:P53759
EnsemblFungi:YML080W GeneID:854895 KEGG:sce:YML080W CYGD:YML080w
BioCyc:MetaCyc:MONOMER-16676 NextBio:977861 Genevestigator:P53759
GermOnline:YML080W Uniprot:P53759
Length = 423
Score = 166 (63.5 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 59/233 (25%), Positives = 100/233 (42%)
Query: 191 LAPLTTVGNLPFRRVCKVLGADVTCGEMA---MCTNLLQGQASEWALLRRHSSEDLFGVQ 247
+AP+ L +R + + GA + M + + + W+ L S + VQ
Sbjct: 33 VAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSSVDRPLVVQ 92
Query: 248 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 307
C P+ L +L++ +C D +D+N+GCP I GS L+ + + +I
Sbjct: 93 FCANDPEYLLAAAKLVEDKC--DAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTLH 150
Query: 308 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSK--LADWDYIY 365
+ P+T K+R F+ + + + GA +TVHGR R+Q+ K LA+W+ I
Sbjct: 151 KNLKVPVTAKIRI--FDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWETIK 208
Query: 366 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE---LASCMIARGALIKPWIF 415
+ NG+I + + S C E + M A G L P +F
Sbjct: 209 YLRDNLPKETVFFANGNIL----YPEDISRCMEHIGADAVMSAEGNLYNPGVF 257
>UNIPROTKB|J3QLD5 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AC130462 EMBL:AC040162 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000562246 Uniprot:J3QLD5
Length = 208
Score = 150 (57.9 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 54/185 (29%), Positives = 79/185 (42%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMCTNLLQGQAS-------- 230
+ KL LAP+ VG LP R + GAD+ C E M C ++ S
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 231 EWALLRRHSSEDLFGVQICGAYPDTLARTV-ELIDQQCTVDFIDINMGCPIDIVVNKGAG 289
+ + R E V G A V L++ V ID+NMGCP G G
Sbjct: 70 DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVEND--VAGIDVNMGCPKQYSTKGGMG 127
Query: 290 SCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR 349
+ LL+ P +++ I+ +P+T K+R SL+ I G +A+ VHGR
Sbjct: 128 AALLSDPDKIEKILSTLVKGTRRPVTCKIRI--LPSLEDTLSLVKRIERTGIAAIAVHGR 185
Query: 350 TRQQR 354
R++R
Sbjct: 186 KREER 190
>FB|FBgn0031238 [details] [associations]
symbol:CG3645 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
KO:K05542 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AY051946 EMBL:BT124833
RefSeq:NP_608507.1 RefSeq:NP_722619.1 UniGene:Dm.4432 SMR:Q9VPM1
IntAct:Q9VPM1 MINT:MINT-325917 STRING:Q9VPM1
EnsemblMetazoa:FBtr0078140 EnsemblMetazoa:FBtr0078141 GeneID:33190
KEGG:dme:Dmel_CG3645 UCSC:CG3645-RA FlyBase:FBgn0031238
InParanoid:Q9VPM1 OrthoDB:EOG41VHJ8 GenomeRNAi:33190 NextBio:782335
Uniprot:Q9VPM1
Length = 505
Score = 167 (63.8 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 60/228 (26%), Positives = 97/228 (42%)
Query: 191 LAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDL-FGVQIC 249
+AP+ L +R +C+ GA++ C NL + ED +Q C
Sbjct: 32 VAPMVDQSELAWRMLCRRYGAEL-CYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFC 90
Query: 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT 309
G + L C D +DIN+GCP I GS L + + I+
Sbjct: 91 GNDAQQILDAALLAQDHC--DAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAK 148
Query: 310 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWDYIYQC 367
+ P+T K+R FE + + G +TVHGRTR+Q+ + +A+W+YI
Sbjct: 149 LAVPVTCKIRI--FEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYIKNV 206
Query: 368 ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 415
+ + +L NG+I + D ++ ++ + M A G L P IF
Sbjct: 207 RQHIK--IPMLANGNILALDDVHRCLTETG-VDGVMSAEGNLHNPAIF 251
>UNIPROTKB|D4A0T1 [details] [associations]
symbol:Dus4l "Protein Dus4l" species:10116 "Rattus
norvegicus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
RGD:1311445 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CH473947
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 IPI:IPI00951041
RefSeq:NP_001129275.1 UniGene:Rn.41975 Ensembl:ENSRNOT00000068419
GeneID:366593 KEGG:rno:366593 NextBio:689691 Uniprot:D4A0T1
Length = 321
Score = 162 (62.1 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 62/237 (26%), Positives = 101/237 (42%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FR + + D+ M + + ++ + + + + VQ A
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA-A 90
Query: 252 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310
L LI C IDIN GCP + G G+CL+ KP + ++ V
Sbjct: 91 NDARLLSDAALI--VCPYASGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRNRV 148
Query: 311 DKP---ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 367
+ P ++IK+R + + ID L + G S +TVHGRT ++R+ + +D I
Sbjct: 149 ENPRFSVSIKIRI-HDDLARTID-LCRKVEATGVSWITVHGRTVEERHQPV-HYDAIKMI 205
Query: 368 ARKASDDLQVLGNGDIYSYLD----WNKHKSDCPELASCMIARGALIKPWIFTEIKE 420
S + ++ NGDI S + W +D M+ARG L P +F +E
Sbjct: 206 KENVS--IPIVANGDIRSLKEAENVWQMTGTD-----GVMVARGLLANPAMFAGYEE 255
>RGD|1311445 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 RGD:1311445 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
IPI:IPI00914747 ProteinModelPortal:D4A3L7
Ensembl:ENSRNOT00000011068 UCSC:RGD:1311445 ArrayExpress:D4A3L7
Uniprot:D4A3L7
Length = 324
Score = 162 (62.1 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 62/237 (26%), Positives = 101/237 (42%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FR + + D+ M + + ++ + + + + VQ A
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA-A 90
Query: 252 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310
L LI C IDIN GCP + G G+CL+ KP + ++ V
Sbjct: 91 NDARLLSDAALI--VCPYASGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRNRV 148
Query: 311 DKP---ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 367
+ P ++IK+R + + ID L + G S +TVHGRT ++R+ + +D I
Sbjct: 149 ENPRFSVSIKIRI-HDDLARTID-LCRKVEATGVSWITVHGRTVEERHQPV-HYDAIKMI 205
Query: 368 ARKASDDLQVLGNGDIYSYLD----WNKHKSDCPELASCMIARGALIKPWIFTEIKE 420
S + ++ NGDI S + W +D M+ARG L P +F +E
Sbjct: 206 KENVS--IPIVANGDIRSLKEAENVWQMTGTD-----GVMVARGLLANPAMFAGYEE 255
>UNIPROTKB|Q9KUX9 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 161 (61.7 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 64/248 (25%), Positives = 104/248 (41%)
Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTC-GEMAMCTNLLQGQASEWALLRRHSSEDLFGV 246
+L +AP+ + R ++L A EM ++ G+ L + E +
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVAL 62
Query: 247 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 306
Q G+ P LA +L Q+ D I++N+GCP D V N G+CL+ +P + + A
Sbjct: 63 QFGGSNPKDLAHCAKLA-QERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAM 121
Query: 307 SGTVDKPITIKVRTGY-----FEGKNRIDSLIADIGTWGASAVTVHGRT--------RQQ 353
VD P+T+K R G +E + + +A+ G G T+H R ++
Sbjct: 122 RAVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKG--GCEQFTIHARKAWLSGLSPKEN 179
Query: 354 RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413
R D+ YQ R L + NG + S + H L MI R A P+
Sbjct: 180 REIPPLDYPRAYQIKRDFPH-LTIAVNGGVKSLEEAKLHLQ---HLDGVMIGREAYQNPY 235
Query: 414 IFTEIKEQ 421
+ E+ +Q
Sbjct: 236 LLAEVDQQ 243
>TIGR_CMR|VC_0379 [details] [associations]
symbol:VC_0379 "TIM-barrel protein, yjbN family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 161 (61.7 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 64/248 (25%), Positives = 104/248 (41%)
Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTC-GEMAMCTNLLQGQASEWALLRRHSSEDLFGV 246
+L +AP+ + R ++L A EM ++ G+ L + E +
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVAL 62
Query: 247 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 306
Q G+ P LA +L Q+ D I++N+GCP D V N G+CL+ +P + + A
Sbjct: 63 QFGGSNPKDLAHCAKLA-QERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAM 121
Query: 307 SGTVDKPITIKVRTGY-----FEGKNRIDSLIADIGTWGASAVTVHGRT--------RQQ 353
VD P+T+K R G +E + + +A+ G G T+H R ++
Sbjct: 122 RAVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKG--GCEQFTIHARKAWLSGLSPKEN 179
Query: 354 RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413
R D+ YQ R L + NG + S + H L MI R A P+
Sbjct: 180 REIPPLDYPRAYQIKRDFPH-LTIAVNGGVKSLEEAKLHLQ---HLDGVMIGREAYQNPY 235
Query: 414 IFTEIKEQ 421
+ E+ +Q
Sbjct: 236 LLAEVDQQ 243
>WB|WBGene00016674 [details] [associations]
symbol:C45G9.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:FO080873 PIR:A88449
RefSeq:NP_498078.2 ProteinModelPortal:Q09504 SMR:Q09504
STRING:Q09504 EnsemblMetazoa:C45G9.2 GeneID:183479
KEGG:cel:CELE_C45G9.2 UCSC:C45G9.2 CTD:183479 WormBase:C45G9.2
InParanoid:Q09504 NextBio:921288 Uniprot:Q09504
Length = 284
Score = 159 (61.0 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 58/221 (26%), Positives = 98/221 (44%)
Query: 200 LPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLART 259
L FR++ +V DV M N ++ + + L + VQ P L+
Sbjct: 7 LAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDPFVLSEA 66
Query: 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP---ITI 316
E++ +C+ +D+N GCP V +KG GS LL+KP + ++ T + P +++
Sbjct: 67 AEMV-YKCSTG-VDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDFSVSL 124
Query: 317 KVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ 376
K+R + + + +D L G + +TVHGRT QR + D Q R D +
Sbjct: 125 KIRINH-DIEKTVD-LCRKAEAAGVTHLTVHGRTPSQRAEPI---DI--QALRIVKDSVS 177
Query: 377 V--LGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 415
V + NG I + + ++ + M A G L P +F
Sbjct: 178 VPIIANGGITTREE-ALFLAEQTGVDGIMAANGLLDNPALF 217
>MGI|MGI:1919166 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 MGI:MGI:1919166 Gene3D:3.20.20.70
GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313
KO:K05545 OrthoDB:EOG4ZCT4T EMBL:AK010138 EMBL:BC109351
IPI:IPI00109359 RefSeq:NP_082278.1 UniGene:Mm.62979
ProteinModelPortal:Q32M08 SMR:Q32M08 STRING:Q32M08 PRIDE:Q32M08
Ensembl:ENSMUST00000020977 GeneID:71916 KEGG:mmu:71916
UCSC:uc007nhr.1 GeneTree:ENSGT00550000074907 InParanoid:Q32M08
NextBio:334944 Bgee:Q32M08 CleanEx:MM_DUS4L Genevestigator:Q32M08
GermOnline:ENSMUSG00000020648 Uniprot:Q32M08
Length = 324
Score = 160 (61.4 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 60/237 (25%), Positives = 101/237 (42%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FR + + D+ M + + ++ + + + + VQ
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFAAN 91
Query: 252 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310
L+ L+ C + IDIN GCP + G G+CL+ KP + ++ V
Sbjct: 92 DARLLSDAALLV---CPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRV 148
Query: 311 DKP---ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 367
+ P ++IK+R + + ID L G S +TVHGRT ++R+ + +D I
Sbjct: 149 ESPRFSVSIKIRI-HDDLARTID-LCRKAEATGVSWITVHGRTVEERHQPV-HYDAIKMI 205
Query: 368 ARKASDDLQVLGNGDIYSYLD----WNKHKSDCPELASCMIARGALIKPWIFTEIKE 420
S + ++ NGDI S + W +D M+ARG L P +F +E
Sbjct: 206 KENVS--IPIVANGDIRSLKEAENVWQMTGTD-----GVMVARGLLANPAMFAGYEE 255
>GENEDB_PFALCIPARUM|PFI0920c [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 163 (62.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 54/215 (25%), Positives = 100/215 (46%)
Query: 140 NGVSVLEEDTRNNT-ADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVG 198
+ +S+L E + N + + K++DI+ EK F + +AP+ V
Sbjct: 153 SNMSILSEKSIENVISPCEKKYKLEDIISNGINYDYRKINEKSTTPF---IQVAPMINVT 209
Query: 199 NLPFRRVCKVLGADVTCG-EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLA 257
N FR + +++ EM + LL + L ++E Q+ G ++++
Sbjct: 210 NRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIVCQLGGCDMNSMS 269
Query: 258 RTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIEATSGTVDKPITI 316
L++Q D I+IN+GCP V NKGA G+ L+ P +++ I+ V P+T+
Sbjct: 270 EAAILVEQ-AGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKKVQIPVTV 328
Query: 317 KVRTGY--FEGKNRIDSLIADIGTWGASAVTVHGR 349
K+RTG ++ + + + I + + G + VH R
Sbjct: 329 KIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHAR 363
>UNIPROTKB|Q8I2W5 [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 163 (62.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 54/215 (25%), Positives = 100/215 (46%)
Query: 140 NGVSVLEEDTRNNT-ADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVG 198
+ +S+L E + N + + K++DI+ EK F + +AP+ V
Sbjct: 153 SNMSILSEKSIENVISPCEKKYKLEDIISNGINYDYRKINEKSTTPF---IQVAPMINVT 209
Query: 199 NLPFRRVCKVLGADVTCG-EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLA 257
N FR + +++ EM + LL + L ++E Q+ G ++++
Sbjct: 210 NRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIVCQLGGCDMNSMS 269
Query: 258 RTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIEATSGTVDKPITI 316
L++Q D I+IN+GCP V NKGA G+ L+ P +++ I+ V P+T+
Sbjct: 270 EAAILVEQ-AGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKKVQIPVTV 328
Query: 317 KVRTGY--FEGKNRIDSLIADIGTWGASAVTVHGR 349
K+RTG ++ + + + I + + G + VH R
Sbjct: 329 KIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHAR 363
>UNIPROTKB|J3QLE4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000582529 Uniprot:J3QLE4
Length = 309
Score = 157 (60.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 54/195 (27%), Positives = 91/195 (46%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIE 304
VQ C P+ + L C D ID+N+GCP ++ +G G+ L + ++ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMIL 134
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ P+T K+R F ++ + G +TVHGRT++Q+ S A W+
Sbjct: 135 LAHEKLSVPVTCKIRV--FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 422
+I + RKA + V NG+I D + D + M A G L P +F E +
Sbjct: 193 HI-KAVRKAVA-IPVFANGNIQCLQDVERCLRDTG-VQGVMSAEGNLHNPALF-EGRSPA 248
Query: 423 HWDITSGERLNIMKD 437
W++ E L+I+++
Sbjct: 249 VWELAE-EYLDIVRE 262
>UNIPROTKB|I3LP14 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000074907 OMA:YLENEHK EMBL:FP565643
Ensembl:ENSSSCT00000023658 Uniprot:I3LP14
Length = 237
Score = 151 (58.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 50/200 (25%), Positives = 90/200 (45%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FR + + D+ M + + ++ + + + + VQ
Sbjct: 34 APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAAN 93
Query: 252 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310
L+ ++ C + IDIN GCP + +G G+CL+ KP +K +++ V
Sbjct: 94 DARLLSDAARIV---CPYANGIDINCGCPQRWALAEGYGACLINKPELVKDMVKQVRNQV 150
Query: 311 DKP---ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 367
+ P ++IK+R + + +D L G S +TVHGRT ++R+ + Y+
Sbjct: 151 ENPRFSVSIKIRI-HSDLTRTVD-LCRKAEATGVSWITVHGRTVEERHQPVH-----YEA 203
Query: 368 AR--KASDDLQVLGNGDIYS 385
+ K S + V+ NGDI S
Sbjct: 204 IKIIKESMSIPVIANGDIRS 223
>UNIPROTKB|Q884G7 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_791948.1 ProteinModelPortal:Q884G7 GeneID:1183773
KEGG:pst:PSPTO_2126 PATRIC:19995530
BioCyc:PSYR223283:GJIX-2167-MONOMER Uniprot:Q884G7
Length = 336
Score = 156 (60.0 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 61/256 (23%), Positives = 104/256 (40%)
Query: 217 EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINM 276
EM LL G + LR +E +Q+ G+ LA L + D +++N+
Sbjct: 49 EMVTTGALLHGDRERF--LRHDETEHPLALQLGGSTAAGLAACARLAEA-AGYDEVNLNV 105
Query: 277 GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 336
GCP D V N G+CL+ P + ++A V P+T+K R G G++ L +
Sbjct: 106 GCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTVKHRIG-INGRDSYAELCDFV 164
Query: 337 GTW---GASAVTVHGRT--------RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS 385
GT G + TVH R ++ R +D + Q + +L+++ NG I +
Sbjct: 165 GTVHDAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQL-KTDFPELEIVLNGGIKT 223
Query: 386 YLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSG-ERLNIMKDFARFGLE 444
++H M+ R A P++ ++ +Q + R ++ +
Sbjct: 224 LEQCSEHLQT---FDGVMLGREAYHNPYLLAQVDQQLFGSVAPVISRHAALESMRPYIAA 280
Query: 445 HWGSDKKGVETTRHFL 460
H S TRH L
Sbjct: 281 HIASGGNMHHVTRHML 296
>UNIPROTKB|Q6P1R4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 EMBL:BC017081
EMBL:BC062566 EMBL:BC064918 IPI:IPI00335251 RefSeq:NP_071439.3
UniGene:Hs.514599 UniGene:Hs.741994 ProteinModelPortal:Q6P1R4
SMR:Q6P1R4 STRING:Q6P1R4 DMDM:74749069 PaxDb:Q6P1R4 PRIDE:Q6P1R4
DNASU:64118 Ensembl:ENST00000306796 Ensembl:ENST00000354321
GeneID:64118 KEGG:hsa:64118 UCSC:uc002kdq.3 CTD:64118
GeneCards:GC17M080015 H-InvDB:HIX0039074 HGNC:HGNC:30086
HPA:HPA023384 neXtProt:NX_Q6P1R4 PharmGKB:PA142671936
eggNOG:COG0042 HOGENOM:HOG000203649 HOVERGEN:HBG061241
InParanoid:Q6P1R4 KO:K05542 OMA:WEMAEEY OrthoDB:EOG4SN1NJ
GenomeRNAi:64118 NextBio:65992 ArrayExpress:Q6P1R4 Bgee:Q6P1R4
CleanEx:HS_DUS1L Genevestigator:Q6P1R4 GermOnline:ENSG00000169718
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 Uniprot:Q6P1R4
Length = 473
Score = 157 (60.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 54/195 (27%), Positives = 91/195 (46%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIE 304
VQ C P+ + L C D ID+N+GCP ++ +G G+ L + ++ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMIL 134
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ P+T K+R F ++ + G +TVHGRT++Q+ S A W+
Sbjct: 135 LAHEKLSVPVTCKIRV--FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 422
+I + RKA + V NG+I D + D + M A G L P +F E +
Sbjct: 193 HI-KAVRKAVA-IPVFANGNIQCLQDVERCLRDTG-VQGVMSAEGNLHNPALF-EGRSPA 248
Query: 423 HWDITSGERLNIMKD 437
W++ E L+I+++
Sbjct: 249 VWELAE-EYLDIVRE 262
>UNIPROTKB|E2R9L8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 CTD:64118 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 RefSeq:XP_848227.1 ProteinModelPortal:E2R9L8
Ensembl:ENSCAFT00000009615 GeneID:475927 KEGG:cfa:475927
NextBio:20851671 Uniprot:E2R9L8
Length = 475
Score = 156 (60.0 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 54/194 (27%), Positives = 90/194 (46%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIE 304
VQ C P+ + L C D ID+N+GCP ++ +G G+ L + ++ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ P+T K+R F ++ + G +TVHGRT++Q+ S A W+
Sbjct: 135 LAHEKLSVPVTCKIRV--FPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 422
+I + RKA + V NG+I D + D + M A G L P +F E +
Sbjct: 193 HI-KAVRKAVA-IPVFANGNIQCLRDVERCIQDTG-VQGVMSAEGNLHNPALF-EGRSPA 248
Query: 423 HWDITSGERLNIMK 436
W++ E L+I++
Sbjct: 249 VWELAE-EYLDIVR 261
>UNIPROTKB|A6QPA8 [details] [associations]
symbol:DUS4L "DUS4L protein" species:9913 "Bos taurus"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 EMBL:DAAA02010587
EMBL:BC149229 IPI:IPI00866854 RefSeq:NP_001095407.1
UniGene:Bt.13512 STRING:A6QPA8 Ensembl:ENSBTAT00000029128
GeneID:511017 KEGG:bta:511017 InParanoid:A6QPA8 OMA:YLENEHK
NextBio:20869728 Uniprot:A6QPA8
Length = 238
Score = 147 (56.8 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 45/198 (22%), Positives = 86/198 (43%)
Query: 192 APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 251
AP+ L FR + + D+ M + + ++ + + + + VQ
Sbjct: 32 APMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQFAAN 91
Query: 252 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310
L+ ++ C + IDIN GCP + +G G+CL+ KP ++ +++ V
Sbjct: 92 DARLLSDAARIV---CPYANGIDINCGCPQRWALAEGYGACLINKPELVRDMVKQVRNQV 148
Query: 311 DKP-ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR 369
+ P ++ ++ + R L G S +TVHGRT ++R+ + Y+ +
Sbjct: 149 ENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPVH-----YEAIK 203
Query: 370 --KASDDLQVLGNGDIYS 385
K S + ++ NGDI S
Sbjct: 204 IIKESMSIPIVANGDIRS 221
>UNIPROTKB|J9NYR0 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 Ensembl:ENSCAFT00000045880 Uniprot:J9NYR0
Length = 584
Score = 156 (60.0 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 54/194 (27%), Positives = 90/194 (46%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIE 304
VQ C P+ + L C D ID+N+GCP ++ +G G+ L + ++ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ P+T K+R F ++ + G +TVHGRT++Q+ S A W+
Sbjct: 135 LAHEKLSVPVTCKIRV--FPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 422
+I + RKA + V NG+I D + D + M A G L P +F E +
Sbjct: 193 HI-KAVRKAVA-IPVFANGNIQCLRDVERCIQDTG-VQGVMSAEGNLHNPALF-EGRSPA 248
Query: 423 HWDITSGERLNIMK 436
W++ E L+I++
Sbjct: 249 VWELAE-EYLDIVR 261
>RGD|708389 [details] [associations]
symbol:Pp3111 "PP3111 protein" species:10116 "Rattus norvegicus"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 RGD:708389 Gene3D:3.20.20.70
GO:GO:0050660 HOVERGEN:HBG061241 KO:K05542 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:AF508021 EMBL:AY327509
EMBL:AY327510 IPI:IPI00203718 RefSeq:NP_742015.1 UniGene:Rn.179335
ProteinModelPortal:Q8K582 PRIDE:Q8K582 GeneID:246185
KEGG:rno:246185 CTD:246185 NextBio:623466 Genevestigator:Q8K582
Uniprot:Q8K582
Length = 438
Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 53/194 (27%), Positives = 90/194 (46%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIE 304
VQ C P+ + L C D ID+N+GCP ++ +G G+ L + ++ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGRYGAFLQEEWDLLQRMIL 134
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ P+T K+R F ++ + G +TVHGRT++Q+ + A W+
Sbjct: 135 LAHERLSVPVTCKIRV--FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 422
+I + RKA + V NG+I D + D + M A G L P +F E +
Sbjct: 193 HI-KAVRKAVG-IPVFANGNIRCLQDVERCIQDTG-VQGVMSAEGNLHNPALF-EGRSPA 248
Query: 423 HWDITSGERLNIMK 436
W++ E L+I++
Sbjct: 249 VWELAD-EYLDIVR 261
>MGI|MGI:1915980 [details] [associations]
symbol:Dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
MGI:MGI:1915980 Gene3D:3.20.20.70 GO:GO:0050660 CTD:64118
eggNOG:COG0042 HOVERGEN:HBG061241 KO:K05542 OrthoDB:EOG4SN1NJ
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AK004041
EMBL:AK088243 EMBL:BC019480 IPI:IPI00224714 RefSeq:NP_081100.2
UniGene:Mm.180622 ProteinModelPortal:Q8C2P3 SMR:Q8C2P3
STRING:Q8C2P3 PRIDE:Q8C2P3 Ensembl:ENSMUST00000167023 GeneID:68730
KEGG:mmu:68730 UCSC:uc007mur.1 GeneTree:ENSGT00550000075089
InParanoid:Q8C2P3 NextBio:327790 Bgee:Q8C2P3 CleanEx:MM_DUS1L
Genevestigator:Q8C2P3 GermOnline:ENSMUSG00000025155 Uniprot:Q8C2P3
Length = 475
Score = 153 (58.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 53/194 (27%), Positives = 90/194 (46%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIE 304
VQ C P+ + L C D ID+N+GCP ++ +G G+ L + ++ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ P+T K+R F ++ + G +TVHGRT++Q+ + A W+
Sbjct: 135 LAHERLSVPVTCKIRV--FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 422
+I + RKA + V NG+I D + D + M A G L P +F E +
Sbjct: 193 HI-KAVRKAVG-IPVFANGNIQCLQDVERCIQDTG-VQGVMSAEGNLHNPALF-EGRSPA 248
Query: 423 HWDITSGERLNIMK 436
W++ E L+I++
Sbjct: 249 VWELAE-EYLDIVR 261
>UNIPROTKB|E1C6D2 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AADN02029975 IPI:IPI00599742
ProteinModelPortal:E1C6D2 Ensembl:ENSGALT00000004402 Uniprot:E1C6D2
Length = 478
Score = 153 (58.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 55/198 (27%), Positives = 93/198 (46%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIE 304
VQ C P+ + L C D ID+N+GCP ++ +G G+ L + ++ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ + PIT K+R F ++ + G +TVHGRT++Q+ + +A W+
Sbjct: 135 LANEKLSVPITCKIRV--FPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNK--HKSDCPELASCMIARGALIKPWIFTEIKE 420
+I Q RKA + V NG+I D + K+ + M A G L P +F E +
Sbjct: 193 HI-QAVRKAVS-IPVFANGNIQCLSDVEECIRKTG---VHGVMSAEGNLHNPALF-EGRN 246
Query: 421 QRHWDITSGERLNIMKDF 438
W++ E L I++ +
Sbjct: 247 PLVWEMAE-EYLEIVQKY 263
>ASPGD|ASPL0000054271 [details] [associations]
symbol:AN0956 species:162425 "Emericella nidulans"
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 EMBL:BN001308
GO:GO:0050660 EMBL:AACD01000014 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
OrthoDB:EOG480N5B RefSeq:XP_658560.1 ProteinModelPortal:Q5BES4
STRING:Q5BES4 EnsemblFungi:CADANIAT00001695 GeneID:2876733
KEGG:ani:AN0956.2 OMA:GHNTGLA Uniprot:Q5BES4
Length = 563
Score = 154 (59.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 54/180 (30%), Positives = 77/180 (42%)
Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302
LF VQ C PD + C D +D+N+GCP I G+ L + +
Sbjct: 125 LF-VQFCANDPDDFFNAARHVAPYC--DAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKL 181
Query: 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLAD 360
I ++ P+T K R E K + I + GAS +T+HGRTR+Q+ + LAD
Sbjct: 182 INKLHMELEVPVTAKFRIQ--ESKEKTLEYAKMILSAGASIITLHGRTREQKGHNTGLAD 239
Query: 361 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC---MIARGALIKPWIFTE 417
W YI D + NG+ ++ D + C E M A G L P IF +
Sbjct: 240 WSYIRYLRDNLPPDTVIFANGNNLNHDDLAR----CLEATGADGVMSAEGNLSDPSIFAK 295
>UNIPROTKB|E1BWI8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AADN02029975
IPI:IPI00820914 ProteinModelPortal:E1BWI8
Ensembl:ENSGALT00000038896 NextBio:20820685 Uniprot:E1BWI8
Length = 486
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 55/198 (27%), Positives = 93/198 (46%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIE 304
VQ C P+ + L C D ID+N+GCP ++ +G G+ L + ++ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ + PIT K+R F ++ + G +TVHGRT++Q+ + +A W+
Sbjct: 135 LANEKLSVPITCKIRV--FPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNK--HKSDCPELASCMIARGALIKPWIFTEIKE 420
+I Q RKA + V NG+I D + K+ + M A G L P +F E +
Sbjct: 193 HI-QAVRKAVS-IPVFANGNIQCLSDVEECIRKTG---VHGVMSAEGNLHNPALF-EGRN 246
Query: 421 QRHWDITSGERLNIMKDF 438
W++ E L I++ +
Sbjct: 247 PLVWEMAE-EYLEIVQKY 263
>UNIPROTKB|Q81ZD5 [details] [associations]
symbol:BAS0319 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 67/253 (26%), Positives = 110/253 (43%)
Query: 191 LAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLL--QGQASEWALLRRHSSEDLFGVQ 247
LAP+ V ++ FR V G DV E + +G S L E
Sbjct: 16 LAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCHPEGMKSVRGRLIFTEDEQPMVAH 75
Query: 248 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 307
I G P+ R + + + IDINMGCP+ V ++G GS L+ +P +I+A
Sbjct: 76 IWGDNPEYF-RQMSIGMAELGFKGIDINMGCPVPNVASRGKGSGLILRPDVAAELIQAAK 134
Query: 308 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 367
P+++K R G+ E + + + I + +++H RTR++ A W+ I +
Sbjct: 135 AG-GLPVSVKTRLGFKE-LSEWEDWLTHIFKQDIANLSIHLRTREEMSQVDAHWELIPEI 192
Query: 368 A----RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH 423
R A + L + NGDI ++ + MI RG P+ F KE R
Sbjct: 193 KKLRDRIAPNTLLTI-NGDIPDRKT-GLELAEKYGIDGVMIGRGIFKNPFAFE--KEPR- 247
Query: 424 WDITSGERLNIMK 436
+ +S E L++++
Sbjct: 248 -EHSSKEHLDLLR 259
>TIGR_CMR|BA_0334 [details] [associations]
symbol:BA_0334 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 67/253 (26%), Positives = 110/253 (43%)
Query: 191 LAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLL--QGQASEWALLRRHSSEDLFGVQ 247
LAP+ V ++ FR V G DV E + +G S L E
Sbjct: 16 LAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCHPEGMKSVRGRLIFTEDEQPMVAH 75
Query: 248 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 307
I G P+ R + + + IDINMGCP+ V ++G GS L+ +P +I+A
Sbjct: 76 IWGDNPEYF-RQMSIGMAELGFKGIDINMGCPVPNVASRGKGSGLILRPDVAAELIQAAK 134
Query: 308 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 367
P+++K R G+ E + + + I + +++H RTR++ A W+ I +
Sbjct: 135 AG-GLPVSVKTRLGFKE-LSEWEDWLTHIFKQDIANLSIHLRTREEMSQVDAHWELIPEI 192
Query: 368 A----RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH 423
R A + L + NGDI ++ + MI RG P+ F KE R
Sbjct: 193 KKLRDRIAPNTLLTI-NGDIPDRKT-GLELAEKYGIDGVMIGRGIFKNPFAFE--KEPR- 247
Query: 424 WDITSGERLNIMK 436
+ +S E L++++
Sbjct: 248 -EHSSKEHLDLLR 259
>UNIPROTKB|G3N340 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
Ensembl:ENSBTAT00000063588 Uniprot:G3N340
Length = 475
Score = 151 (58.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 55/195 (28%), Positives = 88/195 (45%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
VQ C P+ + L C D ID+N+GCP ++ +G L + + +
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMR- 133
Query: 306 TSG--TVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADW 361
T G V P+T K+R F ++ + G +TVHGRT++Q+ S A W
Sbjct: 134 TWGHMVVGCPVTCKIRV--FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASW 191
Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421
++I + RKA + V NG+I D + D + M A G L P +F E +
Sbjct: 192 EHI-KAVRKAVT-IPVFANGNIQCLRDVERCIQDTG-VQGVMSAEGNLHNPALF-EGRSP 247
Query: 422 RHWDITSGERLNIMK 436
W++ E L+I++
Sbjct: 248 AVWELAE-EYLDIVR 261
>UNIPROTKB|Q83D40 [details] [associations]
symbol:CBU_0904 "tRNA-dihydrouridine synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 59/251 (23%), Positives = 106/251 (42%)
Query: 173 LKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTC-GEMAMCTNLLQGQASE 231
LK S + ++ +AP+ + FR + + V EM LL+G+ +
Sbjct: 15 LKIQSIIYNRLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGK--Q 72
Query: 232 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 291
W L E +Q+ G+ P +LA L +++ D I++N+GCP V+ G+C
Sbjct: 73 WRCLDYSPEEHPLALQVGGSDPQSLALCARLAEEK-GFDEINLNVGCPSGRVIAGRFGAC 131
Query: 292 LLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKN--RIDSLIADIGTWGASAVTVHGR 349
LL + + + A S V+ P+++K RTG + + + + + G +H R
Sbjct: 132 LLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHAR 191
Query: 350 TRQQRYSKLAD--------WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 401
+ A+ + +YQ ++ L+++ NG I + N H E+
Sbjct: 192 KAWLKGLSPAENRTVPPLAYPMVYQL-KQDFPGLEIIINGGIKTIEAINDHLR---EVDG 247
Query: 402 CMIARGALIKP 412
MI R A P
Sbjct: 248 VMIGREAYANP 258
>TIGR_CMR|CBU_0904 [details] [associations]
symbol:CBU_0904 "TIM-barrel protein, yjbN family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 59/251 (23%), Positives = 106/251 (42%)
Query: 173 LKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTC-GEMAMCTNLLQGQASE 231
LK S + ++ +AP+ + FR + + V EM LL+G+ +
Sbjct: 15 LKIQSIIYNRLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGK--Q 72
Query: 232 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 291
W L E +Q+ G+ P +LA L +++ D I++N+GCP V+ G+C
Sbjct: 73 WRCLDYSPEEHPLALQVGGSDPQSLALCARLAEEK-GFDEINLNVGCPSGRVIAGRFGAC 131
Query: 292 LLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKN--RIDSLIADIGTWGASAVTVHGR 349
LL + + + A S V+ P+++K RTG + + + + + G +H R
Sbjct: 132 LLKEAELVADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHAR 191
Query: 350 TRQQRYSKLAD--------WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 401
+ A+ + +YQ ++ L+++ NG I + N H E+
Sbjct: 192 KAWLKGLSPAENRTVPPLAYPMVYQL-KQDFPGLEIIINGGIKTIEAINDHLR---EVDG 247
Query: 402 CMIARGALIKP 412
MI R A P
Sbjct: 248 VMIGREAYANP 258
>ASPGD|ASPL0000038251 [details] [associations]
symbol:AN2967 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BN001306 EMBL:AACD01000051 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000195580
KO:K05543 OrthoDB:EOG4PG98M RefSeq:XP_660571.1
ProteinModelPortal:Q5B913 STRING:Q5B913
EnsemblFungi:CADANIAT00010113 GeneID:2873785 KEGG:ani:AN2967.2
OMA:KEMIMHY Uniprot:Q5B913
Length = 437
Score = 125 (49.1 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 39/142 (27%), Positives = 66/142 (46%)
Query: 247 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 306
Q+ A P+ + +L+ V+ ID+N GCP + G G+ LL P ++ I+EA
Sbjct: 105 QMGTANPELAVQAGKLV--AADVNGIDVNSGCPKPFSTSGGMGAALLRTPDKLVSILEAL 162
Query: 307 SGTVDKP--ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 364
V +P I I V+ E +SL++ + G + +T+H RT R + A D +
Sbjct: 163 VKEVGEPYQIGISVKIRLLETPELTESLVSRLVRTGITGLTIHCRTTPMRPRERAIRDQL 222
Query: 365 YQCARKASD-DLQVLGNGDIYS 385
+ + + NGD+ S
Sbjct: 223 RMIVSTCHNAGVACIMNGDVTS 244
Score = 68 (29.0 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCG 216
+D+R K+ LAP+ G LP R + GAD+ G
Sbjct: 15 VDYRGKVVLAPMVRSGELPSRLLALKYGADLCWG 48
>ZFIN|ZDB-GENE-030131-1435 [details] [associations]
symbol:dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
ZFIN:ZDB-GENE-030131-1435 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:BX897685 IPI:IPI00481340
ProteinModelPortal:F1QQD1 Ensembl:ENSDART00000127028
ArrayExpress:F1QQD1 Bgee:F1QQD1 Uniprot:F1QQD1
Length = 511
Score = 148 (57.2 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 63/255 (24%), Positives = 113/255 (44%)
Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS--EWALLRRHSSEDL-F 244
+ +AP+ L +R + + GA++ C + + A+ L + ED
Sbjct: 50 RFVVAPMVDQSELAWRLLSRRHGAEL-CYTPMLHAQVFVRDANYRRENLYSEVNQEDRPL 108
Query: 245 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGII 303
Q C P+ + L C D ID+N+GCP ++ +G G L + ++ +I
Sbjct: 109 ITQFCANDPEVFIQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGVFLQDEWDLLEKMI 165
Query: 304 EATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADW 361
+ + + PIT K+R F + + G +TVHGRT+ Q+ + +A W
Sbjct: 166 KLANEKLSVPITCKIRV--FPEIEKTVKYAKMLEKAGCQLLTVHGRTKDQKGALTGIASW 223
Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421
+I + R+A + + V NG+I D + H + + M A G L P +F E +
Sbjct: 224 KHI-KAVREAVN-IPVFANGNIQHLSDVH-HCMEETGVQGVMSAEGNLHNPALF-EGRSP 279
Query: 422 RHWDITSGERLNIMK 436
W++ E L+I++
Sbjct: 280 PVWEMAE-EYLDIVE 293
>UNIPROTKB|Q48A03 [details] [associations]
symbol:CPS_0353 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 52/212 (24%), Positives = 91/212 (42%)
Query: 217 EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLART-VELIDQQCTVDFIDIN 275
EM +L+G+ L + +E +Q+ G+ D A T I +Q D ++IN
Sbjct: 49 EMVTTGAILRGKGD---YLSYNDAEHPLVLQLGGS--DVKAMTECAKIAEQYGYDEVNIN 103
Query: 276 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY--FEGKNRIDSLI 333
+GCP D V N G+CL+ +P + + + P+T+K R G + + + I
Sbjct: 104 VGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFI 163
Query: 334 ADIGTWGASAVTVHGRT--------RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS 385
++ +H R +Q R D+D +YQ + DL+V NG I +
Sbjct: 164 EEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQI-KNDFKDLEVSINGGIKT 222
Query: 386 YLDWNKHKSDCPELASCMIARGALIKPWIFTE 417
+ + N+H + MI R P++ +
Sbjct: 223 FSEANEHLQ---HIDGVMIGREIYNSPYMLAD 251
>TIGR_CMR|CPS_0353 [details] [associations]
symbol:CPS_0353 "TIM-barrel protein, yjbN family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 52/212 (24%), Positives = 91/212 (42%)
Query: 217 EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLART-VELIDQQCTVDFIDIN 275
EM +L+G+ L + +E +Q+ G+ D A T I +Q D ++IN
Sbjct: 49 EMVTTGAILRGKGD---YLSYNDAEHPLVLQLGGS--DVKAMTECAKIAEQYGYDEVNIN 103
Query: 276 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY--FEGKNRIDSLI 333
+GCP D V N G+CL+ +P + + + P+T+K R G + + + I
Sbjct: 104 VGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFI 163
Query: 334 ADIGTWGASAVTVHGRT--------RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS 385
++ +H R +Q R D+D +YQ + DL+V NG I +
Sbjct: 164 EEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQI-KNDFKDLEVSINGGIKT 222
Query: 386 YLDWNKHKSDCPELASCMIARGALIKPWIFTE 417
+ + N+H + MI R P++ +
Sbjct: 223 FSEANEHLQ---HIDGVMIGREIYNSPYMLAD 251
>UNIPROTKB|E1BH75 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
IPI:IPI00906369 Ensembl:ENSBTAT00000057257 OMA:RMSILAW
Uniprot:E1BH75
Length = 270
Score = 136 (52.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 41/146 (28%), Positives = 66/146 (45%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
VQ C P+ + L C D ID+N+GCP ++ +G L + + +
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMSI 134
Query: 306 TSGTVDK-PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ T P+T K+R F ++ + G +TVHGRT++Q+ S A W+
Sbjct: 135 LAWTTSSXPVTCKIRV--FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLD 388
+I + RKA + V NG+I D
Sbjct: 193 HI-KAVRKAVT-IPVFANGNIQCLRD 216
>UNIPROTKB|E7EUN9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 Pfam:PF00035 Pfam:PF01207 SMART:SM00358
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 GeneID:54920
HGNC:HGNC:26014 IPI:IPI00909876 RefSeq:NP_001258692.1
ProteinModelPortal:E7EUN9 SMR:E7EUN9 Ensembl:ENST00000432752
UCSC:uc010vkk.2 ArrayExpress:E7EUN9 Bgee:E7EUN9 Uniprot:E7EUN9
Length = 458
Score = 114 (45.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 38/137 (27%), Positives = 63/137 (45%)
Query: 287 GAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV 346
G G+ LL+ P +++ I+ +P+T K+R SL+ I G +A+ V
Sbjct: 90 GMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRI--LPSLEDTLSLVKRIERTGIAAIAV 147
Query: 347 HGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL---ASCM 403
HGR R++R + I A S + V+ NG + ++ D + +S M
Sbjct: 148 HGRKREERPQHPVSCEVIKAIADTLS--IPVIANGGSHDHIQQYSDIEDFRQATAASSVM 205
Query: 404 IARGALIKPWIFTEIKE 420
+AR A+ P IF +KE
Sbjct: 206 VARAAMWNPSIF--LKE 220
Score = 70 (29.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGEM 218
+ KL LAP+ VG LP R + GAD+ C E+
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEEL 44
>UNIPROTKB|I3L4Y9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 GO:GO:0005739
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000575677 Bgee:I3L4Y9 Uniprot:I3L4Y9
Length = 158
Score = 116 (45.9 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 43/150 (28%), Positives = 63/150 (42%)
Query: 185 FREKLYLAPLTTVGNLPFRRVCKVLGADVT-CGE-----MAMCTNLLQGQAS-------- 230
+ KL LAP+ VG LP R + GAD+ C E M C ++ S
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 231 EWALLRRHSSEDLFGVQICGAYPDTLARTV-ELIDQQCTVDFIDINMGCPIDIVVNKGAG 289
+ + R E V G A V L++ V ID+NMGCP G G
Sbjct: 70 DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVEND--VAGIDVNMGCPKQYSTKGGMG 127
Query: 290 SCLLTKPMRMKGIIEATSGTVDKPITIKVR 319
+ LL+ P +++ I+ +P+T K+R
Sbjct: 128 AALLSDPDKIEKILSTLVKGTRRPVTCKIR 157
>UNIPROTKB|J3QQZ0 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578907 Uniprot:J3QQZ0
Length = 301
Score = 135 (52.6 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 42/146 (28%), Positives = 69/146 (47%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-GSCLLTKPMRMKGIIE 304
VQ C P+ + L C D ID+N+GCP ++ +G G+ L + ++ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMIL 134
Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWD 362
+ P+T K+R F ++ + G +TVHGRT++Q+ S A W+
Sbjct: 135 LAHEKLSVPVTCKIRV--FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWE 192
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLD 388
+I + RKA + V NG+I D
Sbjct: 193 HI-KAVRKAVA-IPVFANGNIQCLQD 216
>UNIPROTKB|G4MUR1 [details] [associations]
symbol:MGG_08825 "tRNA-dihydrouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CM001232 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_003713841.1
ProteinModelPortal:G4MUR1 EnsemblFungi:MGG_08825T0 GeneID:2679811
KEGG:mgr:MGG_08825 Uniprot:G4MUR1
Length = 614
Score = 138 (53.6 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 47/176 (26%), Positives = 74/176 (42%)
Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRM-KG 301
LF VQ C P L + + C D +D+N+GCP I KG L + +
Sbjct: 120 LF-VQFCANDPSALLEAAKHVAPYC--DAVDLNLGCPQGIA-RKGHYGAFLQEDQELIHK 175
Query: 302 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLA 359
+I + P+T K+R + + ++ GAS +TVHGR R+Q+ + +A
Sbjct: 176 LIRQLHDGLSIPVTAKIRI--LDTPEATLAYARNVLDAGASILTVHGRRREQKGHLTGVA 233
Query: 360 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 415
DW I + + NG+I D + + + M A G L P +F
Sbjct: 234 DWSAIRHLRENLPPETVIFANGNILQRGDLERCL-EATGADAVMSAEGNLSDPTLF 288
>SGD|S000005298 [details] [associations]
symbol:SMM1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IMP;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA;IGI] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000005298 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BK006947 EMBL:Z71631 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OrthoDB:EOG4PG98M EMBL:X91816
EMBL:Z71630 PIR:S63345 RefSeq:NP_014412.1 ProteinModelPortal:P53720
DIP:DIP-4102N MINT:MINT-551094 STRING:P53720 PaxDb:P53720
PeptideAtlas:P53720 EnsemblFungi:YNR015W GeneID:855749
KEGG:sce:YNR015W CYGD:YNR015w OMA:VEESMFY
BioCyc:MetaCyc:MONOMER-16677 NextBio:980160 Genevestigator:P53720
GermOnline:YNR015W Uniprot:P53720
Length = 384
Score = 116 (45.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 269 VDFIDINMGCPIDIVVNKGAGSCLLTKP----MRMKGIIEATSGTVDKPITIKVRTGYFE 324
V IDIN GCP ++ G GS LL P + +K +++ KPI++K+R +
Sbjct: 108 VSGIDINAGCPKHFSIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRL--LD 165
Query: 325 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKA-SDDLQVLGNGDI 383
K L+ + G + +TVH R + R + DYI + ++++ ++ NG I
Sbjct: 166 TKQDTLQLVKRLCATGITNLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAI 225
Score = 61 (26.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 182 LIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQ 226
++ + KL LAP+ G LP R + GAD+ + L+Q
Sbjct: 1 MVTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQ 45
>UNIPROTKB|J3QKP9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578176 Uniprot:J3QKP9
Length = 247
Score = 104 (41.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 37/127 (29%), Positives = 61/127 (48%)
Query: 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--YSKLADWDYIYQCARK 370
P+T K+R F ++ + G +TVHGRT++Q+ S A W++I + RK
Sbjct: 126 PVTCKIRV--FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHI-KAVRK 182
Query: 371 ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGE 430
A + V NG+I D + D + M A G L P +F E + W++ E
Sbjct: 183 AVA-IPVFANGNIQCLQDVERCLRDTG-VQGVMSAEGNLHNPALF-EGRSPAVWELAE-E 238
Query: 431 RLNIMKD 437
L+I+++
Sbjct: 239 YLDIVRE 245
Score = 66 (28.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCP 279
VQ C P+ + L C D ID+N+GCP
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP 109
>UNIPROTKB|Q0C5H0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISS] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000158 GenomeReviews:CP000158_GR eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_759023.1 ProteinModelPortal:Q0C5H0 STRING:Q0C5H0
GeneID:4288047 KEGG:hne:HNE_0293 PATRIC:32213376
BioCyc:HNEP228405:GI69-337-MONOMER Uniprot:Q0C5H0
Length = 328
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 50/228 (21%), Positives = 93/228 (40%)
Query: 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
+Q+ G+ P LA + + D +++N GCP + V + G+CL+ +P + + A
Sbjct: 65 LQLGGSEPGKLAEAARIAEGY-GYDEVNLNCGCPSERVQSGAFGACLMAEPDLVADCVAA 123
Query: 306 TSGTVDKPITIKVRTGYFE--GKNRIDSLIADIGTWGASAVTVHGRT--------RQQRY 355
V P+T+K R + + + + I + G S TVH R ++ R
Sbjct: 124 MRAAVSIPVTVKNRIAIDDLPARETLFTFIEKVSVAGCSVFTVHARKAWLKGLSPKENRE 183
Query: 356 SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 415
D+ + + + A DL ++ NG I + H M+ R A P +
Sbjct: 184 VPPLDYGLVAEL-KTARPDLTIILNGGIATIDQCRDHIG---VFDGVMLGRAAYQTPGLL 239
Query: 416 TEIKEQRHWD---ITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFL 460
++ + I +G+ + + + L GS+ + TRH L
Sbjct: 240 GQVDSDLFGEGAMIAAGDAVRAYEPYIAARLAE-GSNLHAM--TRHML 284
>CGD|CAL0003882 [details] [associations]
symbol:SMM1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0003882 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05543 RefSeq:XP_714536.1 RefSeq:XP_714632.1
ProteinModelPortal:Q59YG4 STRING:Q59YG4 GeneID:3643710
GeneID:3643778 KEGG:cal:CaO19.1362 KEGG:cal:CaO19.8942
Uniprot:Q59YG4
Length = 433
Score = 110 (43.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 269 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI----IEATSGTVDKPITIKVR--TGY 322
VD ID+N GCP + + G G+ LL P ++ I +E K I+ K+R Y
Sbjct: 107 VDGIDLNCGCPKNFSTHSGMGAELLKTPDKLCSILINLVEKIGIPNKKSISCKIRLFNNY 166
Query: 323 FEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA---RKASDDLQVLG 379
+ KN I+ ++ G S +T+H RT R + W+++ + + A +L +
Sbjct: 167 DQSKNLIEKILQT----GISNLTIHCRTPIMRNRQDPVWNFLPKLIPIIQTAGVNLVI-- 220
Query: 380 NGDIYSYLDWNKHKSDCPELA----SCMIARGALIKPWIFT 416
NG++ + D +S + S MIA A P +F+
Sbjct: 221 NGNMQNVADLKNLQSALNDNGGGKLSIMIAEAAEANPSVFS 261
Score = 58 (25.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 182 LIDFREKLYLAPLTTVGNLPFRRVCKVLGADV 213
+I++ KL LAP+ G LP R + G D+
Sbjct: 1 MIEYANKLCLAPMVRSGELPIRLLSLRYGCDL 32
>UNIPROTKB|P32695 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U00006 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 RefSeq:NP_418473.2 RefSeq:YP_492192.1
ProteinModelPortal:P32695 SMR:P32695 PRIDE:P32695
EnsemblBacteria:EBESCT00000004365 EnsemblBacteria:EBESCT00000018223
GeneID:12930614 GeneID:948558 KEGG:ecj:Y75_p3936 KEGG:eco:b4049
PATRIC:32123637 EchoBASE:EB1876 EcoGene:EG11932
HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815
BioCyc:EcoCyc:EG11932-MONOMER BioCyc:ECOL316407:JW5950-MONOMER
BioCyc:MetaCyc:EG11932-MONOMER Genevestigator:P32695
TIGRFAMs:TIGR00742 Uniprot:P32695
Length = 330
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 57/256 (22%), Positives = 102/256 (39%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTC-GEMAMCTNLLQGQASEWALLRR 237
EK + + + +AP+ + R ++L + EM ++ G+ L
Sbjct: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAY 59
Query: 238 HSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPM 297
E +Q+ G+ P LA+ +L + + D I++N+GCP D V N G+CL+
Sbjct: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118
Query: 298 RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASA----VTVHGRT--- 350
+ ++A V P+T+K R G + ++ + L I T +H R
Sbjct: 119 LVADCVKAMRDVVSIPVTVKTRIG-IDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177
Query: 351 -----RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405
++ R D+ +YQ R L + NG I S + K+ + M+
Sbjct: 178 SGLSPKENREIPPLDYPRVYQLKRDFPH-LTMSINGGIKSL---EEAKAHLQHMDGVMVG 233
Query: 406 RGALIKPWIFTEIKEQ 421
R A P I + +
Sbjct: 234 REAYQNPGILAAVDRE 249
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 540 540 0.00094 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 122
No. of states in DFA: 621 (66 KB)
Total size of DFA: 339 KB (2170 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.61u 0.11s 48.72t Elapsed: 00:00:02
Total cpu time: 48.63u 0.11s 48.74t Elapsed: 00:00:02
Start: Tue May 21 08:20:11 2013 End: Tue May 21 08:20:13 2013
WARNINGS ISSUED: 1