BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009196
(540 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T0J6|DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis
thaliana GN=At4g38890 PE=2 SV=2
Length = 691
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/550 (70%), Positives = 441/550 (80%), Gaps = 28/550 (5%)
Query: 6 RFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAK 65
RF G+HRD+ G+++ ++ SE+N NK+ Q+LLWKNKM F ADAKLKSLGLLG AK
Sbjct: 155 RFLGSHRDIT---GNSDD-KEKSEMNFFNKETQRLLWKNKMTFTNADAKLKSLGLLGHAK 210
Query: 66 SKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVND------ 119
+ E + + NG + DS SE + + ++ +I
Sbjct: 211 ------KSNAAEEITAEKTQNGMNGTQATEVAVDSAVSSEHTSEMIQDVDIPGPLETEEV 264
Query: 120 RPLKKAKSENVENCCSVEGD-----NGVSVLEEDTRNNTADTQPAAKIDD---ILPETDG 171
RP+KKAKSE+ +N S GD +GV LEE+T+ N T A D+ + ETD
Sbjct: 265 RPMKKAKSEDQKN--SKTGDVGGVYDGVK-LEEETKKNGYPTSKANVEDEDSIKIVETDS 321
Query: 172 SLKTHSREKK-LIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS 230
SLK H REKK LIDFR+KLYLAPLTTVGNLPFRR+CKVLGADVTCGEMAMCTNLLQGQAS
Sbjct: 322 SLKLHPREKKKLIDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQAS 381
Query: 231 EWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGS 290
EWALLRRHSSEDLFGVQICG+YPDT++R VELID++CTVDFIDINMGCPID+VVNK AGS
Sbjct: 382 EWALLRRHSSEDLFGVQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGS 441
Query: 291 CLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRT 350
LL KP+RMK I+E +S V+ PITIKVRT +FEGKNRIDSLIADIG WGA+AVT+HGR+
Sbjct: 442 ALLNKPLRMKNIVEVSSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRS 501
Query: 351 RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410
RQQRYSK ADWDYIYQC + A+ +LQV+GNGD+YSYLDWNKHKSDCPEL+SCMIARGALI
Sbjct: 502 RQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIARGALI 561
Query: 411 KPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRY 470
KPWIFTEIKEQRHWDITSGERLNIMKDF RFGL+HWGSD KGVETTRHFLLEWLSYT RY
Sbjct: 562 KPWIFTEIKEQRHWDITSGERLNIMKDFVRFGLQHWGSDTKGVETTRHFLLEWLSYTFRY 621
Query: 471 IPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHK 530
IPVGLLDVIPQ++NWRPP+Y GRDDLETLM S+SA DW+RISEMLLGKVP+GFTFAPKHK
Sbjct: 622 IPVGLLDVIPQQINWRPPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHK 681
Query: 531 SNAYDRAENG 540
SNAYDRAENG
Sbjct: 682 SNAYDRAENG 691
>sp|Q7XT07|DUS3L_ORYSJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Oryza sativa
subsp. japonica GN=Os04g0117600 PE=2 SV=2
Length = 685
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/544 (66%), Positives = 418/544 (76%), Gaps = 15/544 (2%)
Query: 6 RFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAK 65
RF GTH+D+ +G+ L + E+N LNKD+QKLLWKNK KFPKA A++K LGL K
Sbjct: 148 RFLGTHKDIHAASGN---LSEKHEINALNKDIQKLLWKNKYKFPKASAQIKLLGLKEVIK 204
Query: 66 SKMKVMEDKEQ------EGVVDSNNSHATN---GNGCMKGTGDSVDESECSPCVPEENNI 116
SK D ++ +G D N N C + +D SE P +
Sbjct: 205 SKPDAANDDKKVNHDNLDGNDDENKEPLCNPPVNAECDSTLCEELDRSEGEPLIDNSIPC 264
Query: 117 VNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTH 176
V RP KK+K E+ E G + ED N + +P+ TD H
Sbjct: 265 VEPRPTKKSKVESDEIDKHGAGTLNTNTESEDP-NLSNGLEPSNNSSSC--RTDLITTPH 321
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
REKK+IDFREKLYLAPLTTVGNLPFRR+CK LGAD+TCGEMAMCTNLLQGQASEWALLR
Sbjct: 322 LREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQASEWALLR 381
Query: 237 RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP 296
RHSSEDLFGVQICGAYPDT+ARTVEL+D +C+VDFIDINMGCPIDIVVNKGAGS LLTKP
Sbjct: 382 RHSSEDLFGVQICGAYPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKP 441
Query: 297 MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYS 356
MR+K I++A S +KP+T+KVRT +FEG+NR DS+++DI WGASA+TVHGR+RQQRYS
Sbjct: 442 MRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITVHGRSRQQRYS 501
Query: 357 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 416
KLADWDYIYQCA+KA D L V+GNGD++S+ DWNKH S C ++++ MIARGALIKPWIFT
Sbjct: 502 KLADWDYIYQCAQKAPDQLHVVGNGDVFSFTDWNKHVSGCSKISTSMIARGALIKPWIFT 561
Query: 417 EIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLL 476
E+KEQRHWDITSGER NI+KDF FGLEHWGSD KGVETTR+FLLEWLSYTCRYIPVGLL
Sbjct: 562 EVKEQRHWDITSGERFNILKDFVSFGLEHWGSDSKGVETTRYFLLEWLSYTCRYIPVGLL 621
Query: 477 DVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDR 536
DVIPQRLNWRPP+Y GRDDLETLM SDSAADWIRISEMLLGKVP+GFTF PKHKSNAYDR
Sbjct: 622 DVIPQRLNWRPPSYCGRDDLETLMISDSAADWIRISEMLLGKVPEGFTFTPKHKSNAYDR 681
Query: 537 AENG 540
AENG
Sbjct: 682 AENG 685
>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis
GN=dus3l PE=2 SV=1
Length = 640
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/413 (56%), Positives = 298/413 (72%), Gaps = 9/413 (2%)
Query: 126 KSENVENCCSVEGDNGV---SVLEEDTRNNTADTQPAAKIDDILPETDGS-LKTHSREKK 181
KS+ C GD+ V++ED+ TQ + I + TD +K EKK
Sbjct: 232 KSDKYLKLCFKSGDSSKMKNPVVKEDSAVQV--TQKDSPITTVGAVTDEDVIKLRPCEKK 289
Query: 182 LIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE 241
IDFR KLYLAPLTT GNLPFRR+CK LGAD+TCGEMAMCTNLLQGQ SEWALL+RH SE
Sbjct: 290 TIDFRNKLYLAPLTTCGNLPFRRICKRLGADITCGEMAMCTNLLQGQPSEWALLKRHHSE 349
Query: 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 301
D+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V KG G L+ + + +
Sbjct: 350 DIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQ 409
Query: 302 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 361
I++ + +D P+T+K+RTG E N LI ++ WG S VT+HGR+R+QRY+KLA+W
Sbjct: 410 IVKGMNSVLDVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQRYTKLANW 469
Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421
+YI QCA+ AS + + GNGDI SY D N+ +A M+ARGAL KPW+FTEIKEQ
Sbjct: 470 EYIDQCAKIAS-PVPLFGNGDIISYEDANRALQT--GVAGVMLARGALFKPWLFTEIKEQ 526
Query: 422 RHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQ 481
RHWDI+S ER +I+KDF +GLEHWGSD +GVE TR F+LEWLS+ CRYIPVGLL+ +PQ
Sbjct: 527 RHWDISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWLSFLCRYIPVGLLEHVPQ 586
Query: 482 RLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
++N RPP Y GRD LETLMAS + DWI+ISEMLLG VP FTF PKHK+N+Y
Sbjct: 587 KINERPPYYMGRDYLETLMASQNVTDWIKISEMLLGPVPPNFTFLPKHKANSY 639
>sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus
tropicalis GN=dus3l PE=2 SV=2
Length = 639
Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/399 (57%), Positives = 292/399 (73%), Gaps = 13/399 (3%)
Query: 136 VEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLT 195
V+ DN V+++D+ T A D+ L +K EKK IDFR KLYLAPLT
Sbjct: 253 VKEDNAAQVVQKDSPVTTV----GAVTDEDL------VKLRPCEKKTIDFRNKLYLAPLT 302
Query: 196 TVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDT 255
T GNLPFRR+CK GAD+TCGEMAMCTNLLQGQ SEWALL+RH SED+FGVQ+ GA+PDT
Sbjct: 303 TCGNLPFRRLCKRFGADITCGEMAMCTNLLQGQPSEWALLKRHHSEDIFGVQLEGAFPDT 362
Query: 256 LARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT 315
+ + EL+++ VDF+DIN+GCPID+V KG G L+ + + + I++ + +D P+T
Sbjct: 363 MTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQIVKGMNSVLDVPLT 422
Query: 316 IKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL 375
+K+RTG E N LI ++ WG S VT+HGR+R+QRY+KLADW+YI QCA AS L
Sbjct: 423 VKIRTGVQEKINIAHKLIPNLRDWGVSLVTLHGRSREQRYTKLADWEYIAQCADIAS-PL 481
Query: 376 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIM 435
+ GNGDI SY D N+ ++ M+ARGAL+KPW+FTEIKEQRHWDI+S ER +I+
Sbjct: 482 PLFGNGDIISYEDANRALQT--GVSGIMLARGALLKPWLFTEIKEQRHWDISSTERFDIL 539
Query: 436 KDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDD 495
KDF +GLEHWGSD +GVE TR F+LEWLS+ CRYIP+GLL+ +PQ++N RPP Y GRD
Sbjct: 540 KDFTNYGLEHWGSDCQGVEKTRRFMLEWLSFLCRYIPIGLLEHVPQKINERPPYYMGRDY 599
Query: 496 LETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
+ETLMAS + DWI+ISEMLLG VP F+F PKHK+N+Y
Sbjct: 600 METLMASQNVTDWIKISEMLLGPVPPNFSFLPKHKANSY 638
>sp|Q96G46|DUS3L_HUMAN tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens
GN=DUS3L PE=1 SV=2
Length = 650
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 222/380 (58%), Positives = 280/380 (73%), Gaps = 4/380 (1%)
Query: 156 TQPAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVT 214
T P++ + P TD + + EKK +D R KLYLAPLTT GNLPFRR+CK GADVT
Sbjct: 273 TPPSSPVRTCGPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVT 332
Query: 215 CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDI 274
CGEMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+ + VDF+DI
Sbjct: 333 CGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDI 392
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 334
N+GCPID+V KG G L+ + + + I+ + +D P+T+K+RTG E N L+
Sbjct: 393 NVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLP 452
Query: 335 DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 394
++ WG + VT+HGR+R+QRY+KLADW YI +C + AS + + GNGDI S+ D N+
Sbjct: 453 ELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAAS-PMPLFGNGDILSFEDANRAMQ 511
Query: 395 DCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVE 454
+ MIARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE
Sbjct: 512 T--GVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVE 569
Query: 455 TTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEM 514
TR FLLEWLS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEM
Sbjct: 570 KTRRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEM 629
Query: 515 LLGKVPDGFTFAPKHKSNAY 534
LLG VP F F PKHK+NAY
Sbjct: 630 LLGPVPPSFAFLPKHKANAY 649
>sp|Q3KRC5|DUS3L_RAT tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus3l PE=2 SV=1
Length = 640
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 218/356 (61%), Positives = 272/356 (76%), Gaps = 3/356 (0%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 238
EKK +D KLYLAPLTT GNLPFRR+CK GADVTCGEMAMCTNLLQGQ SEWALL+RH
Sbjct: 287 EKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLLQGQMSEWALLKRH 346
Query: 239 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMR 298
ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V KG G L+ + +
Sbjct: 347 PCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAK 406
Query: 299 MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL 358
+ I+ + +D P+T+K+RTG E + L+ ++ WG + VT+HGR+R+QRY++L
Sbjct: 407 FQQIVRGMNEVLDVPLTVKMRTGVQERVSLAHRLLPELRNWGVALVTLHGRSREQRYTRL 466
Query: 359 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418
ADW YI QCA+ AS + + GNGDI S+ D N +A M+ARGAL+KPW+FTEI
Sbjct: 467 ADWPYIEQCAKVAS-PMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEI 523
Query: 419 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 478
KEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE TR FLLEWLS+ CRY+PVGLL+
Sbjct: 524 KEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFLCRYVPVGLLER 583
Query: 479 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
+PQR+N RPP Y GRD LETLMAS AADWIRISEMLLG VP GF F PKHK+NAY
Sbjct: 584 LPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPGFVFLPKHKANAY 639
>sp|Q91XI1|DUS3L_MOUSE tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Mus musculus
GN=Dus3l PE=2 SV=1
Length = 637
Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/382 (58%), Positives = 282/382 (73%), Gaps = 4/382 (1%)
Query: 154 ADTQPAAKIDDILPETDGS-LKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGAD 212
A T ++ + P TD ++ EKK +D KLYLAPLTT GNLPFRR+CK GAD
Sbjct: 258 AGTPQSSPVPTCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGAD 317
Query: 213 VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFI 272
VTCGEMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+++ VDF+
Sbjct: 318 VTCGEMAVCTNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFV 377
Query: 273 DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 332
DIN+GCPID+V KG G L+ + + + I+ +G +D P+T+K+RTG E + L
Sbjct: 378 DINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGVNGVLDVPLTVKMRTGVQERVSLAHRL 437
Query: 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392
+ ++ WG + VT+HGR+R+QRY++LADW YI QCA+ AS + + GNGDI S+ D N
Sbjct: 438 LPELRDWGVALVTLHGRSREQRYTRLADWPYIEQCAKVAS-PMPLFGNGDILSFEDANCA 496
Query: 393 KSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKG 452
+A M+ARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +G
Sbjct: 497 MQT--GVAGIMVARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQG 554
Query: 453 VETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRIS 512
VE TR FLLEWLS+ CRY+PVGLL+ PQR+N RPP Y GRD LETLMAS AADWIRIS
Sbjct: 555 VERTRRFLLEWLSFLCRYVPVGLLERPPQRINERPPYYLGRDYLETLMASQQAADWIRIS 614
Query: 513 EMLLGKVPDGFTFAPKHKSNAY 534
EMLLG VP GF F PKHK+NAY
Sbjct: 615 EMLLGPVPPGFVFLPKHKANAY 636
>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
discoideum GN=dus3l PE=3 SV=1
Length = 671
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/368 (54%), Positives = 264/368 (71%), Gaps = 4/368 (1%)
Query: 168 ETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG 227
E D + EKK I+F +L LAPLTTVGNLPFRR+CK LGAD+T GEMA+ T LL+G
Sbjct: 305 EIDIMTPLKANEKKRINFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEG 364
Query: 228 QASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 287
SE ALL+RH ED FGVQICG+Y D + E I+ + DF+DIN GCPID+V N G
Sbjct: 365 TKSELALLKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMG 424
Query: 288 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347
AG+ L+ +P +++ ++ S ++ P TIK+R G E LI +G WGA AVT+H
Sbjct: 425 AGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLH 484
Query: 348 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407
GR+R QRYS+LA+WDY+ QC+ +S + ++GNGDIY+Y D + D +++S MIARG
Sbjct: 485 GRSRAQRYSRLANWDYVKQCSEVSS--IPLIGNGDIYNYQDV-VNIYDSSKVSSIMIARG 541
Query: 408 ALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYT 467
ALIKPWIFTEIKE+R WDI++ ERL+ ++DFA +GL+HWGSD+ GV+ TR FLL WLS++
Sbjct: 542 ALIKPWIFTEIKEKREWDISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLNWLSFS 601
Query: 468 CRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAP 527
RYIPVGLLD + +N RPPAY GR DLETL+AS DWI+I+EM LG V ++F P
Sbjct: 602 HRYIPVGLLDKV-HYMNERPPAYFGRSDLETLLASTQVKDWIKITEMFLGPVTSDYSFVP 660
Query: 528 KHKSNAYD 535
KH SN+Y+
Sbjct: 661 KHNSNSYE 668
>sp|A8NZY7|DUS3_COPC7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=DUS3 PE=3 SV=1
Length = 676
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/376 (51%), Positives = 257/376 (68%), Gaps = 21/376 (5%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 238
EK+ +D++ K YLAPLTTVGNLPFRR+C LGAD+TCGEM + T+ L G EW+L+RRH
Sbjct: 303 EKRRLDWKGKTYLAPLTTVGNLPFRRMCVKLGADITCGEMGLATSFLAGSKEEWSLVRRH 362
Query: 239 SSEDLFGVQICGAYPDTLARTVELIDQQ--CTVDFIDINMGCPIDIVVNKGAGSCLLTKP 296
SE +FG+Q+ G P TL T E+I ++ VDF+D+N GCPID+V G+GS LL
Sbjct: 363 PSEKIFGIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAGSGSALLDNA 422
Query: 297 MRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQR 354
++ II+ + + + P+T+K+RTG EG+N L+ I W ASA+T+HGRTRQQR
Sbjct: 423 GKLGKIIQGMNRALGEIPLTVKIRTGVKEGRNNAHKLMPRISAEWSASAITLHGRTRQQR 482
Query: 355 YSKLADWDYIYQC-----ARKASDDLQ---VLGNGDIYSYLDW----NKHKSDCPELASC 402
Y+KLADWDYI +C AR+A +DL + G GD +S D+ N + D
Sbjct: 483 YTKLADWDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINNYGVD-----GV 537
Query: 403 MIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLE 462
MI RGALIKPWIFTEIKE+R WDI++ ERL +++D+ +GL H+GSD GV TTR +L E
Sbjct: 538 MIGRGALIKPWIFTEIKERREWDISATERLQLIRDYVEYGLNHFGSDTAGVNTTRRYLCE 597
Query: 463 WLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDG 522
LS+ RY+P+GLL+ +P ++N R PA+ GR DLETL+AS + DW++ISEM LG P
Sbjct: 598 ALSFQYRYVPIGLLERLPAKINERAPAFVGRSDLETLLASPDSQDWVKISEMFLGPAPQS 657
Query: 523 FTFAPKHKSNAYDRAE 538
+ F PKHKSNAY E
Sbjct: 658 WVFTPKHKSNAYGSEE 673
>sp|P0CN29|DUS3_CRYNB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=DUS3 PE=3 SV=1
Length = 725
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/440 (47%), Positives = 275/440 (62%), Gaps = 22/440 (5%)
Query: 116 IVNDRPLKKAKSENVENCCSVE----GDNGVSVLEEDTRN--NTADTQPAAKIDDILPET 169
+ N +P K+ + N E G G+ +D N N + + + + ET
Sbjct: 280 LQNKKPTKQQPHKRKNNVLDEEEAANGPTGIPSAGDDEENAMNATENERNEEKGKVYGET 339
Query: 170 DG-SLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ 228
+ + EK+ +++ YLAPLTTVGNLPFRR+C GA +T EMA+ L+ G
Sbjct: 340 EAIDVPLRPEEKRRLNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLVYGA 399
Query: 229 ASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT----VDFIDINMGCPIDIVV 284
EWAL+RRH SE +FGVQ+ G +P+ + E+I VDF+D+NMGCPID+V
Sbjct: 400 KEEWALVRRHESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVF 459
Query: 285 NKGAGSCLLTKPMRM-KGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT-WGAS 342
N+GAGS L+ P R+ K ++ D P+T+K RTG GK LI T WGA
Sbjct: 460 NQGAGSALMDSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWGAG 519
Query: 343 AVTVHGRTRQQRYSKLADWDYIYQCA---RKASDD-----LQVLGNGDIYSYLDWNKHKS 394
A+T+HGR+RQQRYSK ADW+YI C R++ D + + GNGD +S + + +
Sbjct: 520 ALTIHGRSRQQRYSKPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYE-EM 578
Query: 395 DCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVE 454
D + M+ARGALIKPWIFTEIKE+R WDI++ ERL +K FA FGL HWGSD +GV
Sbjct: 579 DRSGVDGVMVARGALIKPWIFTEIKERREWDISAVERLEGIKKFAEFGLSHWGSDTQGVN 638
Query: 455 TTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEM 514
TTR FL E LS+ RYIP+GLL+ +P +LN RPPAY GR++LETL+AS A DW++ISEM
Sbjct: 639 TTRRFLCEALSFQHRYIPIGLLERLPAKLNERPPAYRGRNELETLLASPFAGDWVKISEM 698
Query: 515 LLGKVPDGFTFAPKHKSNAY 534
LGKV +GF+F PKHKSNAY
Sbjct: 699 FLGKVDEGFSFVPKHKSNAY 718
>sp|P0CN28|DUS3_CRYNJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=DUS3 PE=3 SV=1
Length = 725
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/440 (46%), Positives = 274/440 (62%), Gaps = 22/440 (5%)
Query: 116 IVNDRPLKKAKSENVENCCSVE----GDNGVSVLEEDTRN--NTADTQPAAKIDDILPET 169
+ N +P K+ + N E G G+ +D N N + + + + E
Sbjct: 280 LQNKKPTKQQPHKRKNNVLDEEEAANGPTGIPSAGDDEENAMNATENERNEEKGKVYGEP 339
Query: 170 DG-SLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ 228
+ + EK+ +++ YLAPLTTVGNLPFRR+C GA +T EMA+ L+ G
Sbjct: 340 EAIDVPLRPEEKRRLNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLVYGA 399
Query: 229 ASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT----VDFIDINMGCPIDIVV 284
EWAL+RRH SE +FGVQ+ G +P+ + E+I VDF+D+NMGCPID+V
Sbjct: 400 KEEWALVRRHESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVF 459
Query: 285 NKGAGSCLLTKPMRM-KGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT-WGAS 342
N+GAGS L+ P R+ K ++ D P+T+K RTG GK LI T WGA
Sbjct: 460 NQGAGSALMDSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWGAG 519
Query: 343 AVTVHGRTRQQRYSKLADWDYIYQCA---RKASDD-----LQVLGNGDIYSYLDWNKHKS 394
A+T+HGR+RQQRYSK ADW+YI C R++ D + + GNGD +S + + +
Sbjct: 520 ALTIHGRSRQQRYSKPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYE-EM 578
Query: 395 DCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVE 454
D + M+ARGALIKPWIFTEIKE+R WDI++ ERL +K FA FGL HWGSD +GV
Sbjct: 579 DRSGVDGVMVARGALIKPWIFTEIKERREWDISAVERLEGIKKFAEFGLSHWGSDTQGVN 638
Query: 455 TTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEM 514
TTR FL E LS+ RYIP+GLL+ +P +LN RPPAY GR++LETL+AS A DW++ISEM
Sbjct: 639 TTRRFLCEALSFQHRYIPIGLLERLPAKLNERPPAYRGRNELETLLASPFAGDWVKISEM 698
Query: 515 LLGKVPDGFTFAPKHKSNAY 534
LGKV +GF+F PKHKSNAY
Sbjct: 699 FLGKVDEGFSFVPKHKSNAY 718
>sp|Q4P1U2|DUS3_USTMA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=DUS3 PE=3 SV=1
Length = 867
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/391 (47%), Positives = 256/391 (65%), Gaps = 27/391 (6%)
Query: 169 TDGSL---KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL 225
T+GS+ + EK+ +++R +LYLAPLTT GNLPFRR+C G+D+ CGEM + + L
Sbjct: 469 TNGSIDLARIRPSEKRRLNWRGELYLAPLTTTGNLPFRRICTGYGSDIHCGEMGLAESFL 528
Query: 226 QGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT--VDFIDINMGCPIDIV 283
G A+EW+L+RRH SE +FG Q+CG PD L E + + +DF+DIN GCPID+V
Sbjct: 529 HGNAAEWSLVRRHESERIFGTQLCGGKPDLLVPVAEALKAEVGDGLDFVDINCGCPIDLV 588
Query: 284 VNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGT-WGA 341
NKGAGS LL P ++ I+ + + D P+TIK+RTG K + A T W
Sbjct: 589 FNKGAGSALLDHPTKLSKIVRGMNAVLGDTPLTIKLRTGT-GAKQTTHKIFAKAQTEWRV 647
Query: 342 SAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ------------------VLGNGDI 383
+A T+HGR+R+QRY ADW YI CA + + V GNGD+
Sbjct: 648 AAATLHGRSRKQRYKNDADWGYIATCANTLRESVSEWNESSRFADEPEMVPIPVYGNGDV 707
Query: 384 YSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGL 443
YS+ D+ + + + + MIARGALIKPW+FTEIKE+R WDI+S ERL++M+ FA +GL
Sbjct: 708 YSWQDYYE-RIERTHVDGEMIARGALIKPWLFTEIKERRDWDISSRERLDMMRKFAEYGL 766
Query: 444 EHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASD 503
HWGSD GV TTR F+ E +S+T RY+P GLL+ +P RLN RPP + GRD+LETL+AS
Sbjct: 767 THWGSDTHGVNTTRRFMCEMMSFTHRYVPTGLLEFLPSRLNDRPPLFRGRDELETLLASS 826
Query: 504 SAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
+A DW++++EM LGK P ++F PKHKS++Y
Sbjct: 827 NAQDWVKLTEMFLGKPPQEWSFTPKHKSSSY 857
>sp|A8PTG4|DUS3_MALGO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Malassezia globosa
(strain ATCC MYA-4612 / CBS 7966) GN=DUS3 PE=3 SV=1
Length = 766
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/380 (48%), Positives = 248/380 (65%), Gaps = 24/380 (6%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 238
EK+ + ++ LYLAPLTT GNLPFRR+C G+D+ CGEM M + LQG ASEW+L+RR
Sbjct: 387 EKRRLQWKGDLYLAPLTTTGNLPFRRLCASFGSDIHCGEMGMAESFLQGHASEWSLVRRW 446
Query: 239 SSEDLFGVQICGAYPDTLARTVELIDQQCT--VDFIDINMGCPIDIVVNKGAGSCLLTKP 296
E +FG Q+CGA P+ L T E++ ++ +DF+D+N GCPID+V NKGAGS LL
Sbjct: 447 EGERIFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCGCPIDLVYNKGAGSALLDHA 506
Query: 297 MRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQR 354
++ I+ S + + P+TIK+RTG K + A T WG +++HGR+R+QR
Sbjct: 507 NKLGRIVRGMSEALGEIPLTIKLRTGT-TSKPTTHKIFARAQTEWGVGGLSLHGRSRKQR 565
Query: 355 YSKLADWDYIYQCARKASDDLQ------------------VLGNGDIYSYLDWNKHKSDC 396
Y ADW YI C D ++ V GNGD+Y + D+ H
Sbjct: 566 YKNDADWAYIRTCVDTLHDAVRTWNEEPQHADEPDMVPVPVYGNGDVYGWRDYYDHLEHA 625
Query: 397 PELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETT 456
+ MIARGALIKPWIFTEIKE+R WDI+S ERL++++ +A +GL HWGSD +GV TT
Sbjct: 626 -HVDGTMIARGALIKPWIFTEIKERRDWDISSRERLDMIRQYASYGLTHWGSDTQGVNTT 684
Query: 457 RHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLL 516
R FL E LS+T RY+P+GLLD IP R+N RPP + GRD LE+L++S SA DW+RIS+M L
Sbjct: 685 RRFLCEMLSFTHRYVPLGLLDHIPVRMNDRPPPFHGRDPLESLLSSPSAHDWVRISDMFL 744
Query: 517 GKVPDGFTFAPKHKSNAYDR 536
G P + F PKH+SNAY++
Sbjct: 745 GPAPPDWHFTPKHRSNAYEQ 764
>sp|Q6FJ14|DUS3_CANGA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=DUS3 PE=3 SV=1
Length = 640
Score = 352 bits (903), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 177/384 (46%), Positives = 245/384 (63%), Gaps = 27/384 (7%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
++EKK +D R K ++PLTTVGNLP+RR+ + LGADVT EMA+ L+QG SEWAL +
Sbjct: 257 AQEKKPLDLRHKKIVSPLTTVGNLPYRRLMRTLGADVTYSEMALAVPLVQGTNSEWALPK 316
Query: 237 RHSSEDL-FGVQICGAYPDTLARTVELIDQQCT--VDFIDINMGCPIDIVVNKGAGSCLL 293
H SE FGVQ+ + ++ E + + I++N GCPID++ +G+GS LL
Sbjct: 317 AHESEYPGFGVQVACSKGWQASKAAEALATYIPNGISEINLNSGCPIDLLYRQGSGSALL 376
Query: 294 TKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHGRTR 351
P RM + A + D PIT+K+RTG EG D+L+ + +A+T+HGR+R
Sbjct: 377 DNPARMIRCLNAMNYVSGDIPITVKIRTGTKEGHPIADTLVRRLVFETDVAAITLHGRSR 436
Query: 352 QQRYSKLADWDYIYQCA---RKASDDL------------------QVLGNGDIYSYLDWN 390
QQRY+K+ADWDY+ Q A R+A D Q +GNGDI++Y DW
Sbjct: 437 QQRYTKVADWDYVSQVAKALRQAEADFMESPQGKESHHDEKTRHTQFVGNGDIFNYTDWY 496
Query: 391 KHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDK 450
+H D PE+ SCM+ARGALIKPWIF EI Q+H D TS ERL I+K +++F ++HWG+D+
Sbjct: 497 QHLED-PEVDSCMVARGALIKPWIFEEINAQQHLDKTSSERLEILKTYSKFAMDHWGTDE 555
Query: 451 KGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIR 510
G+ R F E++S+ RYIPVG+L+ +P +LN RPP + GRDD+ETL+ S DWI+
Sbjct: 556 YGIALGRRFFCEFMSFFHRYIPVGILERVPVQLNERPPLWKGRDDMETLLGSSDVKDWIK 615
Query: 511 ISEMLLGKVPDGFTFAPKHKSNAY 534
+SEM G D F F PKHKS++Y
Sbjct: 616 LSEMFFGPTEDSFVFTPKHKSSSY 639
>sp|Q5ALL3|DUS3_CANAL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=DUS3 PE=3 SV=1
Length = 613
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 180/378 (47%), Positives = 250/378 (66%), Gaps = 24/378 (6%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 238
EKK + R ++PLTTVGNLP+RR+ K LGADVT EMA+ L+QG EWAL + H
Sbjct: 237 EKKKLHLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQGHNPEWALPKAH 296
Query: 239 SSE-DLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKP 296
SE FGVQI + A+ E I + T V +++N GCPID++ +G GS LL +P
Sbjct: 297 VSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQGSALLDQP 356
Query: 297 MRMKGIIE---ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGRTRQ 352
++ I+ A+SG D P+T+K+RTG EGKN +L++ + G A+A+T+HGR+RQ
Sbjct: 357 SKLLRILSGMNASSG--DIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQ 414
Query: 353 QRYSKLADWDYIYQCAR---------------KASDDLQVLGNGDIYSYLDWNKHKSDCP 397
QRYSK ADW+YI + + D + +GNGD+YS+ DW +H +
Sbjct: 415 QRYSKEADWNYIAEVGTVVKNWNEQQKEDKEGRDRDPVYFVGNGDVYSHEDWYEH-VNTD 473
Query: 398 ELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTR 457
+ S M+ARGALIKPWIF E++ Q++ D +S ERL+I+ FA++ +EHWGSD+ GV +R
Sbjct: 474 GIDSVMVARGALIKPWIFEEVEAQQYLDKSSSERLDILGKFAKYAIEHWGSDEYGVGLSR 533
Query: 458 HFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLG 517
F+ E+LS+T RYIPVG+++ +P +LN RPP + GR+DLETL+AS DWI+I+EM LG
Sbjct: 534 RFMCEFLSFTHRYIPVGIMERLPPKLNERPPKWVGRNDLETLLASTDYKDWIKITEMFLG 593
Query: 518 KVPDGFTFAPKHKSNAYD 535
K D F F PKHKSNAY+
Sbjct: 594 KATDDFQFTPKHKSNAYE 611
>sp|A5DBS1|DUS3_PICGU tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=DUS3 PE=3 SV=2
Length = 607
Score = 342 bits (876), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 263/421 (62%), Gaps = 39/421 (9%)
Query: 136 VEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLT 195
V+ D ++ EE NN + + KI EKK +D R ++PLT
Sbjct: 203 VQSDENIAKREEAKENNASYVEAPFKI---------------AEKKKLDLRGAKIVSPLT 247
Query: 196 TVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DLFGVQICGAYPD 254
TVGNLP+RR+ K LGADVT EMA+ LLQ SEWAL + HSSE FGVQI +
Sbjct: 248 TVGNLPYRRLMKTLGADVTYSEMALSLPLLQATNSEWALPKAHSSEYPGFGVQIATSKHW 307
Query: 255 TLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTV 310
A+ E+I ++ T V +++N GCPID++ +G GS L+ +P R+ I++ A+SG
Sbjct: 308 AAAKAAEVIYKETTHVSELNLNCGCPIDLLYRQGQGSALMEQPARLLRILKGMNASSG-- 365
Query: 311 DKPITIKVRTGYFEGKNRIDSLIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCA- 368
D P+T+K+RTG + KN SL+ + +A+T+HGR+RQQRY+K ADW+YI +
Sbjct: 366 DIPVTVKIRTGTKDNKNTAKSLVERVLAENDVAAITLHGRSRQQRYTKDADWEYIKEVGA 425
Query: 369 ------RKASDDLQ--------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 414
K +D + +GNGD++++ DW + + + S M+ARGALIKPWI
Sbjct: 426 VVTEWNNKKEEDKESSETNRTNFVGNGDVFTHEDW-YNAVNTEGVDSVMVARGALIKPWI 484
Query: 415 FTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 474
F E++ Q++ D ++ ERL+I++ FA F LEHWGSD+ GV +R F+ E+LS+T RYIPVG
Sbjct: 485 FEEVEAQQYLDKSATERLDILRKFADFSLEHWGSDEYGVGLSRRFMCEFLSFTHRYIPVG 544
Query: 475 LLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
+L+ +P ++N RPP + GR++LETL+ S DWI+I+EM GK D FTF PKHKSNAY
Sbjct: 545 ILERLPPKINQRPPQWRGRNELETLLGSTDYKDWIKITEMFYGKTGDNFTFIPKHKSNAY 604
Query: 535 D 535
+
Sbjct: 605 E 605
>sp|A3LUK5|DUS3_PICST tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=DUS3 PE=3 SV=1
Length = 613
Score = 338 bits (868), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 179/423 (42%), Positives = 266/423 (62%), Gaps = 36/423 (8%)
Query: 135 SVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPL 194
+V+ D ++ +E +NN A D K EKK +DFR ++PL
Sbjct: 206 TVQNDENIANAKEQRKNNEATY------------VDAPYKIA--EKKRLDFRNAKIVSPL 251
Query: 195 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DLFGVQICGAYP 253
TTVGNLP+RR+ K LGAD+T EMA+ LLQ +EWAL + H +E +GVQI +
Sbjct: 252 TTVGNLPYRRLMKKLGADITYSEMALSVPLLQATNAEWALPKAHRTEYPGYGVQIATSKH 311
Query: 254 DTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-D 311
A+ E+I ++ V +++N GCPID++ +G GS LL +P R+ I++A + + D
Sbjct: 312 WAAAKVAEIISRETEHVSELNLNCGCPIDLLYRQGQGSALLEQPARLVRILKAMNASSGD 371
Query: 312 KPITIKVRTGYFEGKNRIDSLIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR- 369
P+T+K+RTG E KN +L+ + +A+T+HGR+RQQRY+K ADW+YI + +
Sbjct: 372 IPVTVKIRTGSKENKNTAKTLVERLLAENDVAAITLHGRSRQQRYTKEADWNYIAEVGQV 431
Query: 370 -----------KASDDLQ---VLGNGDIYSYLDW-NKHKSDCPELASCMIARGALIKPWI 414
K S D Q +GNGD++S++DW N +D + S M+ARGALIKPWI
Sbjct: 432 VQQWNDKKEENKDSRDTQRTCFVGNGDVFSHVDWYNAVNTDG--IDSVMVARGALIKPWI 489
Query: 415 FTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 474
F E++ Q++ D T+ ERL+I+K F+ + LEHWG+D+ GV R F+ E+LS+T RYIP+G
Sbjct: 490 FEEVEAQQYLDKTATERLDILKTFSDYALEHWGTDEYGVGLARRFMCEFLSFTHRYIPLG 549
Query: 475 LLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
+L+ +P ++N RPP + GR+++ETL+ S DWI+I+EM LGK D F F PKHKSN+Y
Sbjct: 550 ILERLPPKINERPPQWKGRNEMETLLGSTDYKDWIKITEMFLGKSGDDFVFTPKHKSNSY 609
Query: 535 DRA 537
+++
Sbjct: 610 EKS 612
>sp|Q6BS64|DUS3_DEBHA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=DUS3 PE=3 SV=1
Length = 622
Score = 334 bits (856), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 248/380 (65%), Gaps = 24/380 (6%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 238
EKK ++ R+ ++PLTTVGNLP+RR+ K LGADVT EMA+ LLQG +EWAL + H
Sbjct: 246 EKKKLNLRDAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLLQGTNAEWALPKAH 305
Query: 239 SSE-DLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKP 296
+E +GVQI + A+ E I ++ T V +++N GCPID++ +G GS L+ +P
Sbjct: 306 RTEYPGYGVQIATSKHWAAAKAAEAIYKEATHVSELNLNCGCPIDLLYRQGQGSALMEQP 365
Query: 297 MRMKGIIE---ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGRTRQ 352
R+ I++ A+SG D P+T+K+RTG E KN +L+ I + +A+T+HGR+RQ
Sbjct: 366 ARLLRILKGMNASSG--DIPVTVKIRTGTKENKNTAKALVERILSENEVAAITLHGRSRQ 423
Query: 353 QRYSKLADWDYIYQCARKASD------------DLQ---VLGNGDIYSYLDWNKHKSDCP 397
QRY+K ADW Y+ A D D Q +GNGD+Y++ DW + + P
Sbjct: 424 QRYTKEADWSYVQDVANIVQDWNNKKEDNKELRDTQPTCFVGNGDVYTHEDW-YNAVNIP 482
Query: 398 ELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTR 457
+ S M+ARGALIKPWIF E++ Q++ D +S ERL ++ +A+F +EHWGSD+ GV R
Sbjct: 483 GVDSVMVARGALIKPWIFEEVEAQQYLDKSSTERLEMIGQYAKFAIEHWGSDEYGVGLAR 542
Query: 458 HFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLG 517
F+ E+L +T RYIPVG+L+ +P +LN RPP + GRD+LETL+ S DWI+I+EM LG
Sbjct: 543 RFMCEFLGFTHRYIPVGILERLPPKLNQRPPQWKGRDELETLLGSTDYKDWIKITEMFLG 602
Query: 518 KVPDGFTFAPKHKSNAYDRA 537
K F F PKHKSNAY+++
Sbjct: 603 KAGPNFQFVPKHKSNAYEKS 622
>sp|A7TQ73|DUS3_VANPO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DUS3 PE=3
SV=1
Length = 664
Score = 333 bits (855), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/387 (43%), Positives = 243/387 (62%), Gaps = 23/387 (5%)
Query: 174 KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA 233
+ ++EKK +D R K ++PLTTVGNLP+RR+ + LGADVT EMA+ L+QG SEWA
Sbjct: 278 RYFAQEKKDLDLRRKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTNSEWA 337
Query: 234 LLRRHSSE-DLFGVQI-CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 291
L + HS+E FGVQI C L ++ I++N GCPID++ +G+GS
Sbjct: 338 LPKAHSTEIPGFGVQIACSKAWQAAKAAEALAKFTPDINEINLNSGCPIDLLYRQGSGSA 397
Query: 292 LLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHGR 349
LL P RM + A + D PIT+K+RTG + D+L+ + +A+T+HGR
Sbjct: 398 LLDNPARMIRCLNAMNYVSDSIPITVKIRTGTRDSHPVADTLVKRLVYETDVAAITLHGR 457
Query: 350 TRQQRYSKLADWDYIYQCA-------------------RKASDDLQVLGNGDIYSYLDWN 390
+RQQRY+++ADWDY+ A R++ +Q +GNGD+ ++ DW+
Sbjct: 458 SRQQRYTRVADWDYVSTVAKSLRESEASFLESAEGKESRESKRRIQFVGNGDVNNFEDWH 517
Query: 391 KHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDK 450
+ ++ + S M+ARGALIKPW+F E+ Q+H D +S ERL I++D+A+F +EHWG+D+
Sbjct: 518 RILNNDENIDSIMVARGALIKPWVFEEVDAQQHLDKSSTERLEILRDYAQFSMEHWGTDE 577
Query: 451 KGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIR 510
G+ R F E++S+ RYIP+G+ + P +LN RPP + GRDDLETLM S A DWI+
Sbjct: 578 YGIAQCRRFFCEFMSFFHRYIPIGICERYPVQLNERPPNWVGRDDLETLMGSTDARDWIK 637
Query: 511 ISEMLLGKVPDGFTFAPKHKSNAYDRA 537
+SEM GKV + F F PKHKS+++ A
Sbjct: 638 LSEMFFGKVEESFVFTPKHKSSSFPSA 664
>sp|Q9UTH9|DUS3_SCHPO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dus3 PE=3 SV=1
Length = 617
Score = 332 bits (850), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 176/392 (44%), Positives = 243/392 (61%), Gaps = 36/392 (9%)
Query: 178 REKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR- 236
+EK LID+R++ LAPLTTVGN PFRR+C LGAD EMAMC L+QG EWAL+R
Sbjct: 230 QEKNLIDWRDRKILAPLTTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRG 289
Query: 237 --------RHSSEDLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKG 287
R + GVQ+ +T ++I +QC VDF+D+N GCPID+V +G
Sbjct: 290 LNYEREMMRGGRRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFRQG 349
Query: 288 AGSCLLTKPMRM----KGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI-GTWGAS 342
AGS LL P R+ +G+ +A SG + P+T+K+R G + + +LI I S
Sbjct: 350 AGSSLLENPGRLLRNLQGM-DAVSGQI--PVTVKLRMGNKDDHPVVKNLIGRIFNETNTS 406
Query: 343 AVTVHGRTRQQRYSKLADWDYIYQCARKA----------------SDDLQVLGNGDIYSY 386
A T+HGR+RQQRYSK A+WDYI + A K + L ++GNGD YS+
Sbjct: 407 AATLHGRSRQQRYSKNANWDYIGEIASKVKSMNERIDELPEDSLRTQPLSLIGNGDCYSW 466
Query: 387 LDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHW 446
DW + + + MIARGAL+KPWIF EI+ ++ D +S +RL +++ + GLE+W
Sbjct: 467 QDW--YDGVNKGVDTVMIARGALVKPWIFEEIEARQFIDKSSTQRLEMLEQYCNNGLEYW 524
Query: 447 GSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAA 506
GSD +GV TTR F LE++S+ RY P+ L +V RLN RPP Y+ RD++ETL+AS+
Sbjct: 525 GSDSQGVNTTRRFFLEFMSFFHRYTPIALYEVQRPRLNDRPPLYTARDEMETLLASNKVT 584
Query: 507 DWIRISEMLLGKVPDGFTFAPKHKSNAYDRAE 538
DW+++SE LG P+ FTF PKHKSN+ + AE
Sbjct: 585 DWVKLSEFFLGPTPERFTFTPKHKSNSVEEAE 616
>sp|A6RMI1|DUS3_BOTFB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Botryotinia
fuckeliana (strain B05.10) GN=dus3 PE=3 SV=1
Length = 750
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 187/421 (44%), Positives = 246/421 (58%), Gaps = 67/421 (15%)
Query: 179 EKKLIDF-REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 237
EK+ I F E LAPLTT GNLPFRR+C LGA +T EMAM LLQGQ SEWAL++
Sbjct: 328 EKRRIYFGPETPVLAPLTTQGNLPFRRLCVELGAQLTYSEMAMSIPLLQGQKSEWALMKA 387
Query: 238 HSSE---------------------DL-FGVQICGAYPDTLARTVELIDQQCT-VDFIDI 274
H SE DL FG QI + P + E++ + + ID+
Sbjct: 388 HKSEVTPPRVNSDRTSIVRKYDNSKDLKFGTQISASKPFMAIKAAEVLSRFVPHLRVIDL 447
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGYFEGK----N 327
N GCPI++V +GAGS LL P +++ +I A SG V PIT K+R G GK
Sbjct: 448 NCGCPIELVYRQGAGSALLDAPSKLEKMIRGMNAVSGEV--PITAKIRMGTMTGKPTAFK 505
Query: 328 RIDSLI-------ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDD 374
I+ L +G G +A+T+HGR+RQQRY+K ADW YI +CA + DD
Sbjct: 506 TIERLAFGGVESRERLGAPGCAAITLHGRSRQQRYTKSADWSYIAECAALVKSYNQKKDD 565
Query: 375 L--------------------QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 414
L +GNGD YS++D+ H + + S M+ARGALIKPW+
Sbjct: 566 LTDTVMEPDARTLPNAPDGKIHFIGNGDCYSHIDYLDHIQNA-GVDSVMVARGALIKPWL 624
Query: 415 FTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 474
F EI++ + D ++ ERL ++ F R+GLE WGSD+ GV TR FLLEWLS+ RY+P G
Sbjct: 625 FEEIEKGQVLDKSASERLEYVEKFTRYGLEAWGSDEIGVGQTRRFLLEWLSFAHRYVPAG 684
Query: 475 LLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
+L+ +P L RPPAY GR+DLETL+ASD+ DW++ISEM LG +GF F PKHKSN+Y
Sbjct: 685 ILEHLPPSLQDRPPAYRGRNDLETLLASDNYMDWMKISEMFLGPAHEGFKFQPKHKSNSY 744
Query: 535 D 535
+
Sbjct: 745 E 745
>sp|Q2HDP2|DUS3_CHAGB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=DUS3 PE=3 SV=2
Length = 713
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/419 (43%), Positives = 242/419 (57%), Gaps = 63/419 (15%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S +++L RE LAPLTT GNLPFRR+C LGA VT EMA+ LLQG ++W L+R
Sbjct: 293 SEKRRLYFGRETPVLAPLTTQGNLPFRRLCVELGAQVTYSEMALGLPLLQGLKADWTLMR 352
Query: 237 RHSSEDL---------------------FGVQICGAYPDTLARTVELIDQQCT-VDFIDI 274
H SE + FG QI P + E + Q + +D+
Sbjct: 353 AHESEIVPPRFNPGGPIVQGYDNSKDVKFGAQIAANAPWVAVKATEALSQLLPHLRLVDL 412
Query: 275 NMGCPIDIVVNKGAGSCLL---TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDS 331
N GCP+D V G+GS LL +K RM + A SG V PIT K+R G +GK
Sbjct: 413 NCGCPVDAVFKSGSGSALLDSHSKLERMIRGMNAVSGEV--PITAKIRMGSRDGKLTAQK 470
Query: 332 LIAD-----------IGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------------ 368
L+ IG G +AVT+HGRTR QRY+K ADW YI +CA
Sbjct: 471 LVERLALGSEDLRDMIGAPGCAAVTLHGRTRLQRYTKAADWGYIAECAALIKQFNEKSND 530
Query: 369 -----RKASDD-------LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 416
R+A ++ + LGNGD YS++++ H D ++ S MI RGAL+KPW+F
Sbjct: 531 LADTIREADENTLPNGGKMYFLGNGDCYSHVEYFDH-VDNAKVDSVMIGRGALVKPWVFE 589
Query: 417 EIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLL 476
EI++ ++ D +S ERL ++ F R+G+E WGSD+ G+ TR FLLE+LS+ CRY+P+GLL
Sbjct: 590 EIEKGQYLDKSSSERLTYIEKFVRYGMEAWGSDELGLNYTRRFLLEFLSFFCRYVPIGLL 649
Query: 477 DVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
+ +P LN RPPAY GRDDLETL AS + DWI+ISEM LG P GF F PKHKSN+Y+
Sbjct: 650 ERLPPNLNERPPAYRGRDDLETLFASKNYKDWIKISEMFLGPAPPGFKFQPKHKSNSYE 708
>sp|Q06053|DUS3_YEAST tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS3 PE=1
SV=2
Length = 668
Score = 330 bits (845), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 163/384 (42%), Positives = 241/384 (62%), Gaps = 23/384 (5%)
Query: 174 KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA 233
+ ++EKK +D K ++PLTTVGNLP+RR+ + LGADVT EMA+ L+QG SEWA
Sbjct: 280 RYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTNSEWA 339
Query: 234 LLRRHSSE-DLFGVQI-CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 291
L + H+SE FGVQ+ C L + + I++N GCPID++ +G+GS
Sbjct: 340 LPKAHTSEFPGFGVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYRQGSGSA 399
Query: 292 LLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHGR 349
LL P RM + A + + D PIT+K+RTG EG + L+ + +A+T+HGR
Sbjct: 400 LLDNPARMIRCLNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVKRLVNETDVAAITLHGR 459
Query: 350 TRQQRYSKLADWDYIYQCA-------------------RKASDDLQVLGNGDIYSYLDWN 390
+RQQRY+K ADWDY+ Q A R + + +Q +GNGD+ ++ DW
Sbjct: 460 SRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGKEGRDSKNRIQFVGNGDVNNFEDWY 519
Query: 391 KHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDK 450
++ + + S M+ARGALIKPWIF E++ Q++ D TS ERL+I++D+A+F +EHWG+D+
Sbjct: 520 RYLNGNENIDSVMVARGALIKPWIFEEVESQQYLDKTSTERLDILRDYAQFSMEHWGTDE 579
Query: 451 KGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIR 510
G+ R F E++S+ RY+P+G+ + P +LN RPP + GRD+LETLM S DWI+
Sbjct: 580 YGISQCRRFFCEFMSFFHRYVPMGICERYPVKLNERPPNWCGRDELETLMGSTDVNDWIK 639
Query: 511 ISEMLLGKVPDGFTFAPKHKSNAY 534
+S++ GK + F F PKHKS++Y
Sbjct: 640 LSDLFFGKTDENFVFVPKHKSSSY 663
>sp|A7A1S5|DUS3_YEAS7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain YJM789) GN=DUS3 PE=3 SV=1
Length = 668
Score = 330 bits (845), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 163/384 (42%), Positives = 241/384 (62%), Gaps = 23/384 (5%)
Query: 174 KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA 233
+ ++EKK +D K ++PLTTVGNLP+RR+ + LGADVT EMA+ L+QG SEWA
Sbjct: 280 RYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTNSEWA 339
Query: 234 LLRRHSSE-DLFGVQI-CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 291
L + H+SE FGVQ+ C L + + I++N GCPID++ +G+GS
Sbjct: 340 LPKAHTSEFPGFGVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYRQGSGSA 399
Query: 292 LLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHGR 349
LL P RM + A + + D PIT+K+RTG EG + L+ + +A+T+HGR
Sbjct: 400 LLDNPARMIRCLNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVKRLVNETDVAAITLHGR 459
Query: 350 TRQQRYSKLADWDYIYQCA-------------------RKASDDLQVLGNGDIYSYLDWN 390
+RQQRY+K ADWDY+ Q A R + + +Q +GNGD+ ++ DW
Sbjct: 460 SRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGKEGRDSKNRIQFVGNGDVNNFEDWY 519
Query: 391 KHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDK 450
++ + + S M+ARGALIKPWIF E++ Q++ D TS ERL+I++D+A+F +EHWG+D+
Sbjct: 520 RYLNGNENIDSVMVARGALIKPWIFEEVESQQYLDKTSTERLDILRDYAQFSMEHWGTDE 579
Query: 451 KGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIR 510
G+ R F E++S+ RY+P+G+ + P +LN RPP + GRD+LETLM S DWI+
Sbjct: 580 YGISQCRRFFCEFMSFFHRYVPMGICERYPVKLNERPPNWCGRDELETLMGSTDVNDWIK 639
Query: 511 ISEMLLGKVPDGFTFAPKHKSNAY 534
+S++ GK + F F PKHKS++Y
Sbjct: 640 LSDLFFGKTDENFVFVPKHKSSSY 663
>sp|A7EKL8|DUS3_SCLS1 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dus3
PE=3 SV=1
Length = 750
Score = 329 bits (844), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 186/421 (44%), Positives = 244/421 (57%), Gaps = 67/421 (15%)
Query: 179 EKKLIDF-REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 237
EK+ I F E LAPLTT GNLPFRR+C LGA +T EMAM L QGQ SEWAL++
Sbjct: 328 EKRRIYFGPETPVLAPLTTQGNLPFRRLCVELGAQLTYSEMAMSIPLFQGQKSEWALMKA 387
Query: 238 HSSE---------------------DL-FGVQICGAYPDTLARTVELIDQQCT-VDFIDI 274
H SE DL FG QI P + E++ + + ID+
Sbjct: 388 HESEITPPRINPDRSSIVQNYNNSKDLKFGTQISANKPFQAIKAAEILSRFVPHLRVIDL 447
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGYFEGK----N 327
N GCPI++V +GAGS LL P +++ +I A SG V PIT K+R G GK
Sbjct: 448 NCGCPIELVYRQGAGSALLDAPSKLEKMIRGMNAVSGEV--PITAKIRMGTMTGKPTALK 505
Query: 328 RIDSLI-------ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDD 374
I+ L +G G +A+T+HGR+RQQRY+K ADW YI +CA + DD
Sbjct: 506 TIERLAFGGVESRERLGAPGCAAITLHGRSRQQRYTKNADWSYIAECAALVKSYNQKKDD 565
Query: 375 --------------------LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 414
L +GNGD YS++D+ H + + S M+ARGALIKPW+
Sbjct: 566 LTDTIMEPDARTLPNAPDGKLHFIGNGDCYSHVDYLDHIQNA-SVDSVMVARGALIKPWL 624
Query: 415 FTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 474
F EI++ + D ++ ERL ++ FAR+GLE WGSD+ GV TR FLLEWLS+ RY+P G
Sbjct: 625 FEEIEKGQTLDKSASERLQYIEKFARYGLEAWGSDEMGVGQTRRFLLEWLSFAHRYVPAG 684
Query: 475 LLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534
+L+ +P L RPPAY GR+DLETL+ASD+ DW++I EM LG +GF F PKHKSN+Y
Sbjct: 685 ILEHLPPSLQDRPPAYRGRNDLETLLASDNYMDWMKICEMFLGPAHEGFKFQPKHKSNSY 744
Query: 535 D 535
+
Sbjct: 745 E 745
>sp|A5DTS1|DUS3_LODEL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=DUS3 PE=3 SV=1
Length = 642
Score = 328 bits (841), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 171/381 (44%), Positives = 238/381 (62%), Gaps = 29/381 (7%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 238
EKK I+ R ++PLTTVGNLP+RR+ K LGADVT EMA+ L QG EWAL + H
Sbjct: 266 EKKKINLRGAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALAVPLSQGHRPEWALPKAH 325
Query: 239 SSE-DLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP 296
+E FGVQI + + L V I++N GCPID++ +G GS LL P
Sbjct: 326 VTEYPGFGVQIASSKHWAAAKAAEALYKTTLHVSEINLNCGCPIDLLFKQGQGSALLDSP 385
Query: 297 MRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADI-GTWGASAVTVHGRTRQQR 354
R+ I++A + + D P+TIK+RTG E KN L+ + +A+T+HGR+RQQR
Sbjct: 386 PRLIRIVKAMNASSGDIPVTIKIRTGVKENKNTAVHLVNRVLEETQVAAITLHGRSRQQR 445
Query: 355 YSKLADWDYIYQCAR----------------KASDDLQVLGNGDIYSYLDW----NKHKS 394
Y+K ADWDYI + + + ++ +GNGD+YS+ DW N+
Sbjct: 446 YTKEADWDYIEEVGKVVKTWNEKREDEDKEGRDTNPTWFVGNGDVYSHEDWYNGVNREGV 505
Query: 395 DCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVE 454
D S M+ARGALIKPWIF E++ Q++ D +S ERL +++ +A++ +EHWGSD+ GV
Sbjct: 506 D-----SVMVARGALIKPWIFEEVEAQQYLDKSSTERLAMLEKYAKYAVEHWGSDEYGVS 560
Query: 455 TTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEM 514
R F+ E+LS+T RY+PVG+L+ +P +LN RPP + GR+DLETL+ S DWI+I+EM
Sbjct: 561 NARRFMCEFLSFTHRYVPVGILERLPAKLNERPPKWIGRNDLETLLGSSDYKDWIKITEM 620
Query: 515 LLGKVPDGFTFAPKHKSNAYD 535
LGK D F F PKHKSN+Y+
Sbjct: 621 FLGKAGDDFLFIPKHKSNSYE 641
>sp|Q7SG01|DUS3_NEUCR tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=dus-3 PE=3 SV=1
Length = 737
Score = 325 bits (834), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 183/421 (43%), Positives = 245/421 (58%), Gaps = 64/421 (15%)
Query: 179 EKKLIDF-REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 237
EK+ I F RE LAPLTT GNLPFRR+C LGA++T EMA+ LLQGQ ++W L+R
Sbjct: 317 EKRRIYFGRETPVLAPLTTQGNLPFRRLCVELGAEITYSEMALGLPLLQGQKADWTLMRA 376
Query: 238 HSSE--------------------DL-FGVQICGAYPDTLARTVELIDQQCT-VDFIDIN 275
H SE DL FGVQI P ++ E + + + ID+N
Sbjct: 377 HESEITPPRYTPTGIVDPAYDNSKDLKFGVQITAHAPWIAIKSAETLARYLPHLRVIDLN 436
Query: 276 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEA---TSGTVDKPITIKVRTGYFEGKNRIDSL 332
GCPID+V GAGS LL P +++ +I SG V P+T K+R G + L
Sbjct: 437 CGCPIDMVYKSGAGSALLDAPSKLERMIRGMNTVSGEV--PVTAKIRMGVRDNHLTAQKL 494
Query: 333 IADI-----------GTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDL 375
+ + G G +AVT+HGRTRQQRY+K ADW YI +CA + +D L
Sbjct: 495 VERLALGAPDIRAVSGAPGCAAVTLHGRTRQQRYTKAADWSYIAECAALVKSFNEKADSL 554
Query: 376 Q------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417
Q +GNGD YS++D+ H D ++ S M+ RGA+IKPWIF E
Sbjct: 555 QDTIREADERSLPNGGRMYFVGNGDCYSHVDYFNH-VDNAKVDSVMVGRGAIIKPWIFEE 613
Query: 418 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 477
I ++ D ++ ERL ++ FA++G+E WGSD+ G+ TR FLLE+LS+ RY+P+GLL+
Sbjct: 614 ISAGQYLDKSATERLAYVEKFAKYGMEAWGSDELGLNYTRRFLLEFLSFFHRYVPIGLLE 673
Query: 478 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRA 537
+P +N RPPAY GR++LETL+AS + DWI+ISEM LG P F F PKHKSNAY+
Sbjct: 674 YLPPAMNDRPPAYKGRNELETLLASKNYLDWIKISEMFLGPAPPNFKFQPKHKSNAYENI 733
Query: 538 E 538
E
Sbjct: 734 E 734
>sp|Q6C4K3|DUS3_YARLI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=DUS3 PE=3 SV=1
Length = 622
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/383 (44%), Positives = 241/383 (62%), Gaps = 31/383 (8%)
Query: 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 238
EKK +D + K ++PLTTVGNLP+RR+ K LGADVT GEMA+ L+QG +EWAL R H
Sbjct: 239 EKKKLDLKGKYIVSPLTTVGNLPYRRLMKDLGADVTYGEMALTLPLIQGHKAEWALTRCH 298
Query: 239 SSE----DLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLL 293
SSE + FGVQ+ + + + + CT + I++N GCPID+V +GAGS L+
Sbjct: 299 SSEVTEGNHFGVQVTAPKHWQAIKAAQAVSELCTGISEINLNCGCPIDLVYRQGAGSALM 358
Query: 294 TKPMRMKGIIEATSGTV-DKPITIKVRTGYFE---GKNRIDSLIADIGTWGASAVTVHGR 349
+ + I+ S D PIT+K+RTG K L+A+ T +A T+HGR
Sbjct: 359 DQQGKTARIVRGMSMVSGDVPITVKMRTGTGSTPTAKKLTARLLAEGQT---AAFTLHGR 415
Query: 350 TRQQRYSKLADWDYIYQCARKA---SDDLQ---------------VLGNGDIYSYLDWNK 391
+R QRY+KLADW+YI + A DD++ V+GNGD Y++ DW++
Sbjct: 416 SRAQRYTKLADWNYIREVADSVVNTRDDVREKSELDDHVISHPTWVVGNGDCYTWSDWHR 475
Query: 392 HKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKK 451
D + S M+ARGALIKPWIF E++ ++H D ++ ERL + FA++GLEHWGSD+
Sbjct: 476 -AVDEAHVDSVMVARGALIKPWIFEEVESRQHIDKSATERLEYFQKFAQYGLEHWGSDQY 534
Query: 452 GVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRI 511
GV TR +L E++S+T RY+P G+L+ +P ++N RP + GRD++ETL+ S DWI++
Sbjct: 535 GVNQTRRYLCEFMSFTHRYVPSGILEYLPAKMNDRPDLWKGRDEMETLLGSSDYRDWIKV 594
Query: 512 SEMLLGKVPDGFTFAPKHKSNAY 534
+E LG V D F F PKHKSNAY
Sbjct: 595 TERFLGPVGDEFEFTPKHKSNAY 617
>sp|Q1E2F4|DUS3_COCIM tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coccidioides
immitis (strain RS) GN=DUS3 PE=3 SV=1
Length = 724
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 182/447 (40%), Positives = 250/447 (55%), Gaps = 69/447 (15%)
Query: 148 DTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCK 207
+ R+ D + K LP S +++L E LAPLTT GNLPFRR+C
Sbjct: 285 EARDEVEDRRAQFKEPPFLP---------SEKRRLYFGSETPVLAPLTTQGNLPFRRLCV 335
Query: 208 VLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDL---------------------FGV 246
LGA T EMAM ++QG EWAL++ H SE L FGV
Sbjct: 336 ELGAQFTYSEMAMSLPIVQGHKGEWALMKAHQSEVLPPTIKPNQGVVKDYDHSRDLKFGV 395
Query: 247 QICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305
QI P + E++ C + +D+N GCPID+V GAGS LL P +++ I+
Sbjct: 396 QISANKPWQALKATEVMTALCPHLRVVDLNCGCPIDLVYRDGAGSALLEHPSKLEKILRG 455
Query: 306 TSGTVDK-PITIKVRTGYFEGKNRIDSLIADI------------GTWGASAVTVHGRTRQ 352
+ ++ P++ K+R G + LI + G G +A+T+HGR+RQ
Sbjct: 456 MNAVSNEVPVSAKIRMGTKDNSPTALKLIERLVLGGPEFTEIGQGPAGVAAITLHGRSRQ 515
Query: 353 QRYSKLADWDYIYQCA-----------------RKASDDLQV-------LGNGDIYSYLD 388
QRY++ ADW YI +CA R+A D LQ LGNGD YS+ D
Sbjct: 516 QRYTREADWSYISECAALIRRLNERSDDLTDTIREADDRLQAPGRRVYFLGNGDCYSHED 575
Query: 389 WNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 448
+ + + + + MIARGAL+KPWIF EI+ ++ D ++ ERL+I++ FA++GL WGS
Sbjct: 576 YYRAIGES-GVDTVMIARGALMKPWIFEEIQAGQYLDKSASERLSIVEKFAKYGLNAWGS 634
Query: 449 DKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADW 508
D+ GV TTR FLLE LS+T RYIP+GLL+ +P R+ RPPAY GR++LETL+ASD+ DW
Sbjct: 635 DEHGVGTTRRFLLELLSFTHRYIPIGLLEHLPPRIQDRPPAYKGRNELETLLASDNYKDW 694
Query: 509 IRISEMLLGKVPDGFTFAPKHKSNAYD 535
I+ISEM LG F F PKHKSN+Y+
Sbjct: 695 IKISEMFLGPAHKDFKFEPKHKSNSYE 721
>sp|Q0U9D6|DUS3_PHANO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=DUS3 PE=3 SV=2
Length = 739
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 179/418 (42%), Positives = 243/418 (58%), Gaps = 60/418 (14%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S +++L E LAPLTT GN+P+RR+C LG VT EMAM L+QG+ EWAL++
Sbjct: 318 SEKRRLYYGPETPVLAPLTTQGNMPYRRLCVDLGCQVTWSEMAMGMPLIQGERGEWALMK 377
Query: 237 RHSSE--------------------DL-FGVQICGAYPDTLARTVELIDQQC-TVDFIDI 274
H SE D+ FG QI P +TVE++ C + ID+
Sbjct: 378 AHESEIAAPRFQSKGTVVQGYDNAADIRFGAQIAANKPWLANKTVEVLTDNCPKLRAIDL 437
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLI 333
N GCPI++V KG+GS LL +++ I+ + + PIT+KVR G + LI
Sbjct: 438 NCGCPINLVCEKGSGSALLDSEAKLENILRGMNYVSKEVPITVKVRMGTKDNHPTAQKLI 497
Query: 334 ------------ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR-----KASDDLQ 376
+D GT G +A+T+HGR++QQRYSK ADW YI +CA K D Q
Sbjct: 498 KRLVLGGYEALASDKGTSGVAAITLHGRSKQQRYSKSADWSYIAECASLINRLKKEKDAQ 557
Query: 377 V-------------------LGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417
+GNGD YS+ D+ H ++ + S MI RGALIKPWIF E
Sbjct: 558 TDTAAEADPRDQANGGHVYFVGNGDCYSHEDYYNHMNNA-NVDSVMIGRGALIKPWIFEE 616
Query: 418 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 477
I++ ++ D ++ ERL ++ FA++GL+ WGSD+ G+ TTR FLLEWLS+ RY+PVGLL+
Sbjct: 617 IEKGQYLDKSATERLAYIEKFAKYGLQTWGSDELGIGTTRRFLLEWLSFAHRYVPVGLLE 676
Query: 478 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
+P + RPP + GR+DLETLMAS+ DWI++SEM LGK P F F PKHKSNAY+
Sbjct: 677 HLPPNIQDRPPRFRGRNDLETLMASEHYLDWIKLSEMFLGKAPPTFKFEPKHKSNAYE 734
>sp|Q4WRX4|DUS3_ASPFU tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=dus3 PE=3 SV=1
Length = 726
Score = 322 bits (826), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 174/417 (41%), Positives = 243/417 (58%), Gaps = 61/417 (14%)
Query: 179 EKKLIDF-REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 237
EK+ I F E LAPLTT GNLPFRR+C G T EMAM +L+QGQ SEWAL++
Sbjct: 308 EKRRIYFGPETPTLAPLTTQGNLPFRRLCIDYGCQFTYSEMAMGMSLIQGQKSEWALMKA 367
Query: 238 HSSEDL---------------------FGVQICGAYPDTLARTVELIDQQC-TVDFIDIN 275
H SE L FG QI G P + EL+ + + ID+N
Sbjct: 368 HESEALPPTISSTADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLN 427
Query: 276 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIA 334
GCPID V +GAGS LL P +++ ++ + + PIT+K+RTG + LI
Sbjct: 428 CGCPIDQVFREGAGSALLDHPSKLEKMLRGMNAVSEMIPITVKIRTGTRDNSPNATKLIE 487
Query: 335 ------------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDLQ 376
+IG G +AVT+HGR+RQQRY+K+ADW YI +CA + DD+
Sbjct: 488 RLVLGGHESGILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVT 547
Query: 377 ------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418
LGNGD YS+ D++ H ++ + + M+ RGA+IKPW+F EI
Sbjct: 548 DTVREPDERMLPNGGKVFFLGNGDCYSHYDYDDHINNA-GVDAVMVGRGAIIKPWVFEEI 606
Query: 419 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 478
+ ++ D ++ ERL +++ +A++GL+ WGSD+ GV TTR F+LEWLS+T RY+P+GLL+
Sbjct: 607 QAGQYLDKSATERLAMIEKYAKYGLDTWGSDEHGVGTTRRFMLEWLSFTYRYVPIGLLEY 666
Query: 479 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
+P + RPPA+ GR++LETL+ S + DWI+I+EM LG F F PKHKSNAY+
Sbjct: 667 LPPHIQDRPPAWRGRNELETLLGSPNYKDWIKITEMFLGPAHKDFKFEPKHKSNAYE 723
>sp|A4RLF4|DUS3_MAGO7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=DUS3 PE=3
SV=1
Length = 739
Score = 322 bits (826), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 188/429 (43%), Positives = 243/429 (56%), Gaps = 68/429 (15%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S +++L RE LAPLTT GNLPFRR+C LGA T EMAM ++QGQ SEWAL++
Sbjct: 314 SEKRRLYFGRETPVLAPLTTQGNLPFRRLCVDLGAQGTYSEMAMAKPIVQGQQSEWALMK 373
Query: 237 RHSSE-------------------------DL-FGVQI-CGAYPDTLARTVELIDQQCTV 269
H SE DL FG QI ++P + L +
Sbjct: 374 AHESETRPPTLSPETLASNSPIVKVYDNSRDLRFGAQISASSHPLAIKAAECLTTFLPHL 433
Query: 270 DFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGYFE-- 324
ID+N GCPID++ GAGS LL + +++ II A SG V PIT K+R G E
Sbjct: 434 RLIDLNCGCPIDMIYKAGAGSALLEQHNKIERIIRGMNAVSGEV--PITCKLRIGVKENH 491
Query: 325 --GKNRIDSLIA-------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------R 369
K I+ + +G G +A+T+HGRTRQQRY K ADW YI +CA R
Sbjct: 492 PLAKKNIERAVFGSPDFRNQLGAPGCAAITLHGRTRQQRYKKPADWGYIAECAALIQSYR 551
Query: 370 KASDDLQ------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411
D+L LGNGD YS+ D+ K D + + MI RGALIK
Sbjct: 552 DKRDELTDTVREPDASTLAPSSEVFFLGNGDCYSHADYYK-AIDESHVDTVMIGRGALIK 610
Query: 412 PWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYI 471
PW+F EI ++ D +S ERL ++ F R+G+E WG+D+ G+ TTR FLLE+LS+ RY+
Sbjct: 611 PWVFEEIAAGQYLDKSSTERLGYIERFCRYGMEAWGADEMGIGTTRRFLLEYLSFAYRYV 670
Query: 472 PVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKS 531
P+GLL+ +P +N RPPAY GRDDLETLMASD+ DWI+ISEM LG +GF F PKHKS
Sbjct: 671 PIGLLERLPPAINDRPPAYRGRDDLETLMASDNYRDWIKISEMFLGPAHEGFKFQPKHKS 730
Query: 532 NAYDRAENG 540
N+Y+ G
Sbjct: 731 NSYEMEAEG 739
>sp|A1D1U0|DUS3_NEOFI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=dus3 PE=3 SV=1
Length = 726
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 173/417 (41%), Positives = 242/417 (58%), Gaps = 61/417 (14%)
Query: 179 EKKLIDF-REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 237
EK+ I F E LAPLTT GNLPFRR+C G T EMAM +L+QGQ SEWAL++
Sbjct: 308 EKRRIYFGPETPALAPLTTQGNLPFRRLCIDHGCQFTYSEMAMGMSLIQGQKSEWALMKA 367
Query: 238 HSSEDL---------------------FGVQICGAYPDTLARTVELIDQQC-TVDFIDIN 275
H SE L FG QI G P + EL+ + + ID+N
Sbjct: 368 HESEALPPTISSTADVVQGYDNSKDLKFGAQIAGNKPWHAIKATELLGRLTPNLRVIDLN 427
Query: 276 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIA 334
GCPID V +GAGS LL P +++ ++ + + PIT+K+RTG + LI
Sbjct: 428 CGCPIDQVFREGAGSALLDHPSKLEKMLRGMNAVSEMIPITVKIRTGTRDNSPNATKLIE 487
Query: 335 ------------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDLQ 376
+IG G +A+T+HGR+RQQRY+K ADW YI +CA + DD+
Sbjct: 488 RLVLGGHESSMLNIGPPGVAAITLHGRSRQQRYTKSADWSYIAECAALIKRLNEKKDDVT 547
Query: 377 ------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418
LGNGD YS+ D++ H ++ + + M+ RGA+IKPW+F EI
Sbjct: 548 DTVREPDERMLPNGGKVFFLGNGDCYSHHDYDDHINNA-GVDAVMVGRGAIIKPWVFEEI 606
Query: 419 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 478
+ ++ D ++ ERL +++ +A++GL+ WGSD+ GV TTR F+LEWLS+T RY+P+GLL+
Sbjct: 607 QAGQYLDKSATERLAMVEKYAKYGLDTWGSDEHGVGTTRRFMLEWLSFTYRYVPIGLLEY 666
Query: 479 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
+P + RPPA+ GR++LETL+ S + DWI+I+EM LG F F PKHKSNAY+
Sbjct: 667 LPPHIQDRPPAWRGRNELETLLGSPNYKDWIKITEMFLGPAHKDFKFEPKHKSNAYE 723
>sp|Q6CWM0|DUS3_KLULA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=DUS3 PE=3 SV=1
Length = 665
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 234/377 (62%), Gaps = 20/377 (5%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
++EK+ +D K ++PLTTVGNLP+RR+ + LGADVT EMA+ L+QG SEWAL +
Sbjct: 287 AQEKRKLDLHHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTNSEWALPK 346
Query: 237 RHSSE-DLFGVQI-CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLT 294
H SE FGVQI C L V I++N GCPID++ +G+GS LL
Sbjct: 347 AHCSEFPGFGVQIACSKTWQAAKAAEALAANVTGVSEINLNSGCPIDLLYRQGSGSALLD 406
Query: 295 KPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHGRTRQ 352
P RM + + + D P+T+K+RTG EG S+ + +A+T+HGRTRQ
Sbjct: 407 NPARMIRCLNGMNYVSNDIPVTVKIRTGTREGHPIALSITKRLVLETDVAAITLHGRTRQ 466
Query: 353 QRYSKLADWDYI---------YQCARKASDDL------QVLGNGDIYSYLDWNKHKSDCP 397
QRY+K ADWDY+ Y+ R+ + +L Q +GNGD ++ DW KH +
Sbjct: 467 QRYTKSADWDYVGEVANAVRTYEAERQENKNLRDGQKIQFVGNGDCNNWEDWYKHLEN-K 525
Query: 398 ELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTR 457
+ S M+ARGALIKPWIF E+ Q++ D +S ERL I+KD+ +F ++HWG+D+ G+ R
Sbjct: 526 NMDSVMVARGALIKPWIFEEVDAQQYMDKSSKERLEILKDYCKFAMDHWGTDQYGISQCR 585
Query: 458 HFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLG 517
F E++S+ RY+P+G+ + P LN RPP + GRDDLETL+ S + DW+++SEM G
Sbjct: 586 RFFCEFMSFFHRYVPMGICERYPVLLNERPPNWKGRDDLETLLGSTDSNDWLKLSEMFFG 645
Query: 518 KVPDGFTFAPKHKSNAY 534
KV D F F PKHKSN++
Sbjct: 646 KVNDEFVFTPKHKSNSF 662
>sp|A6QYC6|DUS3_AJECN tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=DUS3 PE=3 SV=1
Length = 741
Score = 318 bits (816), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 179/427 (41%), Positives = 244/427 (57%), Gaps = 68/427 (15%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S +++L E LAPLTT GNLPFRR+C LGA +T EMAM +L+QG SEWAL++
Sbjct: 320 SEKRRLYFGPETPVLAPLTTQGNLPFRRLCVDLGAQLTYSEMAMSMSLVQGSKSEWALMK 379
Query: 237 RHSSEDL---------------------FGVQICGAYPDTLARTVELIDQQC-TVDFIDI 274
H SE L FG QI G P R E + C + ID+
Sbjct: 380 AHESETLPPAVNPKQTIVKDYDNSRDLKFGAQITGNKPWVALRATEAMTALCPQLRVIDM 439
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGYFEGKNRIDS 331
N GCPID+V +G+GS LL +++ ++ A SG + PIT K+R G +
Sbjct: 440 NCGCPIDMVFREGSGSALLDHASKLEKMLRGMNAVSGEI--PITAKIRMGTKDSNPTATK 497
Query: 332 LIADI------------GTWGASAVTVHGRTRQQRYSKLADWDYIYQCA----------- 368
LI + G G +A+T+HGR+RQQRYS+ ADW+YI QCA
Sbjct: 498 LIERLIMGGVESHEIGRGPAGVAAITLHGRSRQQRYSRQADWEYISQCAALVKRLNEQTD 557
Query: 369 -------------RKASDDLQVLGNGDIYSYLDWNK--HKSDCPELASCMIARGALIKPW 413
+ ++ + LGNGD YS+ D+ KS + + M+ARGAL+KPW
Sbjct: 558 IGTDTIKEPDARDQPSAGKVFFLGNGDCYSHEDYFNGIQKSG---VDTVMVARGALVKPW 614
Query: 414 IFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPV 473
IF EI++ ++ D ++ ERL +++ FAR+GLE WGSD+ GV TR FLLE+LS+T RYIPV
Sbjct: 615 IFEEIEKGQYLDKSASERLALVEKFARYGLEAWGSDEYGVGNTRRFLLEYLSFTHRYIPV 674
Query: 474 GLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNA 533
G+L+ +P + RPPA+ GR++LETL+ SD+ DWI+ISEM LG F F PKHKSN+
Sbjct: 675 GILEYLPPSIQDRPPAWKGRNELETLLGSDNYKDWIKISEMFLGPAHKDFKFEPKHKSNS 734
Query: 534 YDRAENG 540
Y+ G
Sbjct: 735 YEIVAEG 741
>sp|A1CNY3|DUS3_ASPCL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=dus3 PE=3 SV=1
Length = 728
Score = 318 bits (815), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 173/418 (41%), Positives = 240/418 (57%), Gaps = 60/418 (14%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S +++L E LAPLTT GNLPFRR+C LGA T EMAM +L+QGQ SEWAL++
Sbjct: 309 SEKRRLYFGPETPALAPLTTQGNLPFRRLCTDLGAQFTYSEMAMGMSLIQGQKSEWALMK 368
Query: 237 RHSSEDL---------------------FGVQICGAYPDTLARTVELIDQQCT-VDFIDI 274
H +E + FG QI P + EL+ + + ID+
Sbjct: 369 AHETEAIPPTISSGANIVQGYDNSQDLKFGAQIAANKPWHAIKATELLGRLTPHLRVIDL 428
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLI 333
N GCPID V GAGS LL +++ I+ + + PIT+K+RTG + LI
Sbjct: 429 NCGCPIDQVYRDGAGSALLDHQSKLEKILRGMNAVSEAIPITVKIRTGTRDASPNALKLI 488
Query: 334 A------------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDL 375
+IG G +A+T+HGRTRQQRY+K ADW YI +CA + +D++
Sbjct: 489 ERLTLGGHESSMLNIGPPGVAAITLHGRTRQQRYTKQADWSYIAECAALIKRLNEKTDEV 548
Query: 376 Q------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417
LGNGD YS+ D+ H ++ + + M+ RGA+IKPW+F E
Sbjct: 549 TDTVREPDARTLPNGGKVYFLGNGDCYSHKDYEDHINNA-GVDAVMVGRGAIIKPWVFEE 607
Query: 418 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 477
I+ ++ D T+ ERL ++ FA++GL+ WGSD+ GV TTR F+LEWLS+T RY+P+GLLD
Sbjct: 608 IQTGQYLDKTATERLAYVEKFAKYGLDTWGSDEHGVGTTRRFMLEWLSFTQRYVPIGLLD 667
Query: 478 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
+P + RPPA+ GR++LETL+ S + DWI+I+EM LG F F PKHKSNAY+
Sbjct: 668 YLPPNIQDRPPAWRGRNELETLLGSPNYKDWIKITEMFLGPAHKDFKFEPKHKSNAYE 725
>sp|Q5BF62|DUS3_EMENI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=dus3 PE=3 SV=1
Length = 714
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/418 (39%), Positives = 241/418 (57%), Gaps = 60/418 (14%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S +++L E LAPLTT GNLPFRR+C LGA +T EMA+ L+QG EWAL+R
Sbjct: 295 SEKRRLYFGPETPALAPLTTQGNLPFRRLCVELGAQLTYSEMALSMPLIQGHKPEWALMR 354
Query: 237 RHSSEDL---------------------FGVQICGAYPDTLARTVELIDQQC-TVDFIDI 274
H +E L FG QI G + + E++ + ID+
Sbjct: 355 AHETEALPPTVSARASVVQDYDNSKDMKFGAQIAGNKYRWVMKATEVLSSLTPNLRVIDL 414
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLI 333
N GCPID++ +G+GS LL P +++ ++ + ++ PIT+K+RTG + L+
Sbjct: 415 NCGCPIDLLYREGSGSALLDAPSKLEKMLRGMNAVSEQIPITVKIRTGTRDNTPNAQKLV 474
Query: 334 ADI------------GTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDL 375
+ G G +A+T+HGR+RQQRY++ A+W+YI + A + SD++
Sbjct: 475 ERLILGGHEASMLNCGPSGVAAITLHGRSRQQRYTREANWEYISETAALIKRLNEKSDEV 534
Query: 376 Q------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417
LGNGD YS++D+ H + ++ S M+ RGALIKPW+F E
Sbjct: 535 TDTIREPEERMRPNGGKTWFLGNGDCYSHVDYEDHIKNA-KVDSVMVGRGALIKPWLFEE 593
Query: 418 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 477
I+ ++ D ++ ERL ++ FAR+G+E WGSD+ G+ TR FLLEWLS+ CRY+P+GLL+
Sbjct: 594 IQAGQYLDKSASERLAYVEKFARYGMETWGSDEYGIGITRRFLLEWLSFACRYVPIGLLE 653
Query: 478 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
+P ++N RPP + GR+D+ETLM S DWI+ISEM LG F F PKHKSN+YD
Sbjct: 654 YLPPKINDRPPYWRGRNDMETLMGSHDYRDWIKISEMFLGPAHKDFKFEPKHKSNSYD 711
>sp|Q2UL89|DUS3_ASPOR tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=dus3 PE=3 SV=1
Length = 730
Score = 316 bits (809), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/422 (41%), Positives = 242/422 (57%), Gaps = 61/422 (14%)
Query: 179 EKKLIDF-REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 237
EK+ I F E LAPLTT GNLPFRR+C LGA T EMA+ L+QGQ EWAL+R
Sbjct: 310 EKRRIYFGPETPVLAPLTTQGNLPFRRLCIELGAQFTYSEMALSMPLIQGQRGEWALMRA 369
Query: 238 HSSEDL---------------------FGVQICG-AYPDTLARTVELIDQQCTVDFIDIN 275
H +E L FG QI + L T L + ID+N
Sbjct: 370 HETEMLPPTISPGADVVQGYDHSKDFRFGAQIAANKHWQALKATEVLSAYTPNLRVIDLN 429
Query: 276 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNR------ 328
GCPID++ +GAGS LL P +++ I+ + + PIT K+R G +
Sbjct: 430 CGCPIDLLFREGAGSALLEHPSKLERILRGMNAVSQEIPITAKIRMGTRDNSPNALKLAE 489
Query: 329 ------IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR----------KAS 372
+S +G G +A+T+HGR+RQQRY++ ADW YI +CA + +
Sbjct: 490 RLILGGYESSTLGLGAPGVAALTLHGRSRQQRYTRQADWGYISECAALIKRLNEKTDQVT 549
Query: 373 DDLQ--------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418
D ++ LGNGD YS+LD++ H ++ + + M+ RGALIKPW+F EI
Sbjct: 550 DTVREPDPRTQPNGGKTWFLGNGDCYSHLDYDDHVNNA-GVDTVMVGRGALIKPWLFEEI 608
Query: 419 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 478
+ ++ D ++ ERL++++ FA++GLE WGSD+ GV TTR FLLEWLS+ CRYIP+GLL+
Sbjct: 609 QAGQYLDKSASERLSLVEKFAKYGLETWGSDEHGVGTTRRFLLEWLSFACRYIPIGLLEY 668
Query: 479 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAE 538
+P R+ RPP++ GR++LETLM S + DWI+I+EM LG F F PKHKSNA++
Sbjct: 669 LPPRIQDRPPSWRGRNELETLMGSHNYKDWIKITEMFLGPAHKDFRFEPKHKSNAWEAEA 728
Query: 539 NG 540
G
Sbjct: 729 EG 730
>sp|A2QAU6|DUS3_ASPNC tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=dus3 PE=3 SV=1
Length = 748
Score = 315 bits (807), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 175/422 (41%), Positives = 240/422 (56%), Gaps = 61/422 (14%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S +++L E LAPLTT GN+PFRR+C LGA T EMAM L+QG SEWAL+R
Sbjct: 327 SEKRRLYFGPETPALAPLTTQGNMPFRRLCVELGAQFTYSEMAMSLPLIQGNKSEWALMR 386
Query: 237 RHSSEDL---------------------FGVQICGAYP-DTLARTVELIDQQCTVDFIDI 274
H SE L FG QI P T L + ID+
Sbjct: 387 AHESEMLPPTMLPGADIVQGYDNSKDMKFGAQIAANKPWQAFKATEALAKVTPNLRVIDL 446
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRI---- 329
N GCPID+V GAGS LL P +++ II + D+ PIT+K+R G +
Sbjct: 447 NCGCPIDLVFKDGAGSALLEHPSKLEKIIRGMNTVSDQIPITVKIRMGTKDNNPNALKLT 506
Query: 330 ---------DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------------ 368
SL+ G GA+A+T+HGR+RQQRY++ ADW+YI +CA
Sbjct: 507 ERLLLGGYETSLLHHDGAAGAAAITLHGRSRQQRYTRQADWEYISECAALIKRLNEKTDA 566
Query: 369 ------------RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 416
+ + LGNGD YS++D++ H ++ + + M+ RG LIKPW+F
Sbjct: 567 VTDTIREPDARTQPNGGKVYFLGNGDCYSHVDYDNHINNA-GVDAVMLGRGPLIKPWLFE 625
Query: 417 EIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLL 476
EI+ ++ D ++ ERL +++ F ++GLE WGSD+ GV TTR FL+EWLS+T RY+P+GLL
Sbjct: 626 EIQAGQYLDKSATERLAMIEKFCKYGLEAWGSDEHGVGTTRRFLMEWLSFTRRYVPIGLL 685
Query: 477 DVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDR 536
+ +P +N RPPA+ GR++LETL+AS + DW++ISEM LG F F PKHKSN+YD
Sbjct: 686 EHLPPYINDRPPAFRGRNELETLLASANYKDWLKISEMFLGPAHKDFKFEPKHKSNSYDE 745
Query: 537 AE 538
AE
Sbjct: 746 AE 747
>sp|Q757E3|DUS3_ASHGO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=DUS3 PE=3 SV=1
Length = 647
Score = 314 bits (805), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/382 (43%), Positives = 237/382 (62%), Gaps = 22/382 (5%)
Query: 174 KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA 233
+ ++EKK +D K ++PLTTVGNLPFRR+ + LGADVT EMA+ L+QG SEWA
Sbjct: 262 RYFAQEKKPLDLHHKKIVSPLTTVGNLPFRRLMRQLGADVTYSEMALAVPLIQGTNSEWA 321
Query: 234 LLRRHSSE-DLFGVQICGAYPDTLARTVELIDQQCT--VDFIDINMGCPIDIVVNKGAGS 290
L + H SE FGVQ+ + P A+ E + + I++N GCPID++ +G+GS
Sbjct: 322 LPKAHCSELPGFGVQLACSKPWQAAKAAEALADNVGDGLSEINLNSGCPIDLLYRQGSGS 381
Query: 291 CLLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHG 348
LL P RM + A + + D P+++K+RTG +G L + +A+T+HG
Sbjct: 382 ALLDNPARMIRCLNAMNYVSKDVPVSVKLRTGTRDGHPIALGLCKRLVMETDVAAITLHG 441
Query: 349 RTRQQRYSKLADWDYIYQCA----------------RKASDDLQVLGNGDIYSYLDWNKH 392
RTRQQRY++ ADWDY+ Q A R+ +Q +GNGD ++ DW +H
Sbjct: 442 RTRQQRYTRSADWDYVGQVADALRSYETERAEKLKDREGKLRIQFVGNGDCNNWEDWYRH 501
Query: 393 KSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKG 452
+ + S M+ARGALIKPWIF E+ +++ D +S ERL I++D+ARF ++HWG+D+ G
Sbjct: 502 LEN-ENVDSVMVARGALIKPWIFEEVDARQYIDKSSSERLEILRDYARFSMDHWGTDEYG 560
Query: 453 VETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRIS 512
+ R + E++S+ RY+P+G+ + P LN RPP + GRDDLETL+ S AADWI++S
Sbjct: 561 IALCRRYFCEFMSFFHRYVPMGICERYPVLLNERPPNWRGRDDLETLLGSTDAADWIKLS 620
Query: 513 EMLLGKVPDGFTFAPKHKSNAY 534
E G PD F F PKHKSN+Y
Sbjct: 621 EQFFGPTPDKFVFQPKHKSNSY 642
>sp|Q0CZL3|DUS3_ASPTN tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=dus3 PE=3 SV=1
Length = 719
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/418 (40%), Positives = 239/418 (57%), Gaps = 60/418 (14%)
Query: 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 236
S +++L E LAPLTT GNLPFRR+C LGA EMAM L+QG SEWALLR
Sbjct: 300 SEKRRLYFGPETPTLAPLTTQGNLPFRRLCVELGAQFVYSEMAMSMPLIQGTKSEWALLR 359
Query: 237 RHSSE--------------------DL-FGVQICGAYPDTLARTVELIDQ-QCTVDFIDI 274
H +E D+ FG QI P + E++ + + ID+
Sbjct: 360 SHETELTPPTISPSDKIVQGYDNSKDMKFGAQIAANKPWQALKATEVLSKFTPNLRVIDL 419
Query: 275 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLI 333
N GCPID++ +GAGS LL +++ I+ + ++ PI++K+R G + L+
Sbjct: 420 NCGCPIDLLFREGAGSALLEHHSKLEKILRGMNAVSEEIPISVKIRLGVRDNAPNAQKLV 479
Query: 334 A------------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDL 375
+G G +A+T+HGR+RQQRY+K ADW YI + A K D+L
Sbjct: 480 ERLVLGGHESHLLGLGPCGTAAITLHGRSRQQRYTKQADWGYIAETAALIKNLNKRKDEL 539
Query: 376 Q------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417
LGNGD +S+ D++ H ++ + S MI RGALIKPW+F E
Sbjct: 540 TDTIYEPDERMLPNGGKVYFLGNGDCFSHQDYDDHINNA-GVDSVMIGRGALIKPWLFEE 598
Query: 418 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 477
I+ ++ D ++ ERL++++ FA++GL+ WGSD+ GV TR FLLEWLS+ RY+PVGLL+
Sbjct: 599 IQTGQYLDKSASERLSLVEKFAKYGLDTWGSDEYGVGITRRFLLEWLSFHRRYVPVGLLE 658
Query: 478 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 535
+P + RPPA+ GR+++ETL+ASD DWI+I+EM LG F F PKHKSNAY+
Sbjct: 659 YLPPNIQDRPPAWRGRNEMETLLASDHYKDWIKITEMFLGPAHKDFKFEPKHKSNAYE 716
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 112/233 (48%), Gaps = 3/233 (1%)
Query: 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 242
I + ++ LAP+ V N FR K GA + C EM +L A +L E
Sbjct: 7 IQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGMLYIDEREK 66
Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302
+QI G +TL + +DQ T D IDINMGCP+ + AG+ L P ++ +
Sbjct: 67 PLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIYEM 126
Query: 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWD 362
+ A V+KP+T+K+R G+ E + G AV +HGRTR Q Y A+WD
Sbjct: 127 VSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYEGTANWD 186
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 415
I + K S + V+GNGD+ + D K D + MI R AL PW+
Sbjct: 187 IIKEV--KQSVSIPVIGNGDVKTPQD-AKRMLDETGVDGVMIGRAALGNPWMI 236
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 140/279 (50%), Gaps = 11/279 (3%)
Query: 184 DFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWAL-LRRHSSED 242
+ +++LAP+ + + PFRR+C LGA +T EM M TN + L L H+
Sbjct: 7 EINSRIFLAPMAGITDQPFRRLCSQLGAGLTFSEM-MSTNPDVWHTEKSRLRLAHHAEIG 65
Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302
+ VQI G+ P +A + I+ IDINMGCP V K AGS LL +P + I
Sbjct: 66 INAVQIAGSEPTEIAEAAK-INVAYGAQIIDINMGCPAKKVNKKMAGSALLREPQLVARI 124
Query: 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWD 362
++A VD P+T+K+RTG+ + + G SA+T+HGRTR ++ A+++
Sbjct: 125 LDAVVNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHGRTRDCLFNGQAEYE 184
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 422
I A K + + ++ NGDI S K D + MI RG+ +PW+F E+K+
Sbjct: 185 SIK--AVKQAVFMPIIANGDITSP-QKAKDVLDYTGADAVMIGRGSFGRPWLFQELKQFL 241
Query: 423 H----WDITSGERLNIMKDFARFGLEHWGSDKKGVETTR 457
D++ E+ +M L H+ ++KG R
Sbjct: 242 ETGDIIDLSIDEKCQLMLKHIE-DLHHFYGEQKGYRIAR 279
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 126/235 (53%), Gaps = 10/235 (4%)
Query: 184 DFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR--RHSSE 241
+ +++LAP+ + + PFRR+C GA +T EM M TN Q +E + LR H
Sbjct: 7 QLKNRIFLAPMAGITDQPFRRICTHYGAGLTFSEM-MSTNP-QVWHTEKSKLRLAHHQEA 64
Query: 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 301
+ VQI G PD +A+ + I+ + + IDINMGCP V K AGS LL P +K
Sbjct: 65 GINAVQIAGCDPDEMAKAAQ-INVEYGAEIIDINMGCPAKKVNRKMAGSALLQYPDLVKQ 123
Query: 302 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW-GASAVTVHGRTRQQRYSKLAD 360
I+ +V P+T+K+RTG+ + NR IA I G A+T+HGRTR + A+
Sbjct: 124 ILNKVVKSVTVPVTLKIRTGW-DKDNRNCLEIAKIAEQCGIQALTIHGRTRSCMFEGEAE 182
Query: 361 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 415
+D I A K + ++ NGDI S + K+ D + MI RG+L PW+F
Sbjct: 183 YDNIK--AVKEQLSIPIIANGDITS-AEKAKYVLDYTNADAIMIGRGSLGNPWLF 234
>sp|O67533|DUS_AQUAE Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus (strain
VF5) GN=dus PE=3 SV=1
Length = 316
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 140/277 (50%), Gaps = 11/277 (3%)
Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQ 247
++ LAP+ + + FRR+C+ LGAD T E+ +L+ L E +Q
Sbjct: 7 EVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLRN-GIPMKLAYFTEEERPIHIQ 65
Query: 248 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV-NKGAGSCLLTKPMRMKGIIEAT 306
+ G+ P+ +A+ +I ++ DFIDIN GC + V+ NK AG L P+ M +++ T
Sbjct: 66 VFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPL-MGEVVKET 124
Query: 307 SGTVDK---PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY 363
+ P++ K+R G+ K+ ++ ++ ++ G S + +H RT +Q +S A W
Sbjct: 125 VEALKPYGIPVSAKIRLGF--EKDEVERIVEELQKAGVSLIAIHARTAKQGFSGKALWHR 182
Query: 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH 423
I + + AS + ++G+GD+ S+ D + + E M+ R AL PWIF E KE+R
Sbjct: 183 IKEAKKVAS--VPIIGSGDVKSWRDIERMFEET-ECDGVMVGRAALSNPWIFKEFKEKRD 239
Query: 424 WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFL 460
++ ER++ + + E+ +K E +
Sbjct: 240 IEVGLKERMDFILEELSMMTEYMSREKACAEIKSQIV 276
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 123/250 (49%), Gaps = 8/250 (3%)
Query: 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 242
I + LAP++ V +LPFRR+ K G + EM +++ ++ +
Sbjct: 8 ISLEGPVILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIRENRQTLRMVECEPEQF 67
Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302
VQ+ G PD +A +L + + IDIN GCP+ VVN AGS L+ I
Sbjct: 68 PMAVQLAGCEPDVMAEAAKLNEDRGAA-IIDINFGCPVKKVVNGHAGSSLMRDEALAARI 126
Query: 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWD 362
+EAT+ V P+T+K+R G+ + L G VTVHGRTR+Q Y+ ADW
Sbjct: 127 LEATAKAVTIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVTVHGRTREQFYNGTADWS 186
Query: 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 422
+I K + + V+ NGDI S+ ++ ++ MI RGA +PW ++
Sbjct: 187 FIRSV--KEAVSIPVVVNGDITSFDAVDRALAESGA-DGVMIGRGAYGRPWFPAQVM--- 240
Query: 423 HWDITSGERL 432
H+ I +GERL
Sbjct: 241 HY-IRTGERL 249
>sp|O52536|DUSB_KLEPN tRNA-dihydrouridine synthase B OS=Klebsiella pneumoniae GN=dusB
PE=3 SV=1
Length = 321
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 125/239 (52%), Gaps = 8/239 (3%)
Query: 184 DFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED- 242
R +L AP+ + + PFR +C +GA +T EM M +N ++ + L H E
Sbjct: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHVDEPG 65
Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302
+ VQI G+ P +A I+ + IDINMGCP V K AGS LL P ++K I
Sbjct: 66 IRTVQIAGSVPKEMAAAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDQVKSI 124
Query: 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG-TWGASAVTVHGRTRQQRYSKLADW 361
+ A VD P+T+K+RTG+ E ++R IA + G A+T+HGRTR ++ A++
Sbjct: 125 LTAVVKAVDVPVTLKIRTGW-EPEHRNCVEIAQLAEECGIQALTIHGRTRACLFNGDAEY 183
Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 420
D I +K S + V+ NGDI L + D + MI R A +PWIF EI+
Sbjct: 184 DSIRAVKQKVS--IPVIANGDITDPLK-ARAVLDYTGADALMIGRAAQGRPWIFREIQH 239
>sp|O52539|DUSB_ERWCA tRNA-dihydrouridine synthase B OS=Erwinia carotovora GN=dusB PE=3
SV=2
Length = 321
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 139/265 (52%), Gaps = 20/265 (7%)
Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED-LFGV 246
+L AP+ + + PFR +C +GA +T EM + +N ++ + L HS E + V
Sbjct: 11 RLIAAPMAGISDRPFRALCHAMGAGMTVSEM-LSSNPEVWRSDKSRLRMVHSDEPGIRAV 69
Query: 247 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 306
QI G PD +A I+ IDINMGCP V K AGS LL P +K I+
Sbjct: 70 QIAGCDPDEMA-AARRINADSGAQIIDINMGCPAKKVNRKMAGSALLQYPDLVKQILSTV 128
Query: 307 SGTVDKPITIKVRTGYF-EGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYI 364
VD P+T+K+RTG+ E +N ++ IA + G A+T+HGRTR ++ A++D I
Sbjct: 129 VKAVDVPVTLKIRTGWAPEHRNCVE--IAKLAEDCGIQALTIHGRTRACLFNGFAEYDSI 186
Query: 365 YQCARKASDDLQVLGNGDIYSYLDWNKHKS--DCPELASCMIARGALIKPWIFTEIKEQR 422
A K + + ++ NGDI D +K ++ D + MI R A +PWIF EI+
Sbjct: 187 R--AVKQAVSIPIIANGDI---TDPHKARAVLDYTGADALMIGRAAQGRPWIFREIQ--- 238
Query: 423 HWDITSGERLNIMK--DFARFGLEH 445
H+ + +GE L + + R +EH
Sbjct: 239 HY-LDTGELLAPLPLVEVKRLLIEH 262
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 139/288 (48%), Gaps = 19/288 (6%)
Query: 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL---QGQASEWALLRRHS 239
I+ + LAP++ V +L FRR+ K GA + EM ++ + + A++R +
Sbjct: 7 IELSSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESRQSLKKSAIMRDDA 66
Query: 240 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRM 299
+ VQ+ G P+ +A ++ ++ ID+N GCP VV +GS L+
Sbjct: 67 TSAC--VQLAGCEPNVIAEAAKM-NEGMGAKIIDLNFGCPAKKVVGGYSGSALMKDEQLA 123
Query: 300 KGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 359
I EAT V P+T+K+R G+ + +L + G +TVHGRTR Q YS A
Sbjct: 124 AKIFEATVEAVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMITVHGRTRCQFYSGNA 183
Query: 360 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNK--HKSDCPELASCMIARGALIKPWIFTE 417
DWD+I K S + V+ NGDI ++ + KS + M+ RGA KPW+ ++
Sbjct: 184 DWDFIRSV--KESVKIPVIANGDITNFAKAKEALQKSGADGI---MVGRGAYGKPWLISQ 238
Query: 418 IKE-----QRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFL 460
I + + E+L+I+ + L+++G + GV R +
Sbjct: 239 IDHYLKTGEEKSAPSIAEQLDIVTEHYEAILDYYG-ESVGVPIARKHI 285
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 128/262 (48%), Gaps = 42/262 (16%)
Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMC-TNLLQGQASEWALLRRHSSED-LFG 245
+L LAP+ V + PFR++C+ LGA + EM L + S L+ H ED
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLI--HDGEDEPRS 71
Query: 246 VQICGAYPDTLA----RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 301
VQI G P LA R VEL Q IDINMGCP V NK AGS LL +
Sbjct: 72 VQIAGGDPAMLAEAAQRNVELGAQ-----IIDINMGCPAKKVCNKAAGSALLRDEALVAE 126
Query: 302 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW-GASAVTVHGRTRQQRYSKLAD 360
I++A VD P+T+K+RTG+ + NR +A + G A+ VHGRTR Y+ A+
Sbjct: 127 ILDAVVRAVDVPVTLKIRTGW-DRDNRNGVTVAKLAEQAGIQALAVHGRTRADLYTGEAE 185
Query: 361 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA----------SCMIARGALI 410
++ I A K + + V NGDI D PE A + +I R A
Sbjct: 186 YETI--AAIKQAVSIPVFANGDI-----------DSPEKARKVIEQTGVDALLIGRAAQG 232
Query: 411 KPWIFTEIKEQRHWDITSGERL 432
+PWIF EI H+ + +GE L
Sbjct: 233 RPWIFREID---HY-LRTGEHL 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,441,234
Number of Sequences: 539616
Number of extensions: 9368461
Number of successful extensions: 22018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 21565
Number of HSP's gapped (non-prelim): 210
length of query: 540
length of database: 191,569,459
effective HSP length: 122
effective length of query: 418
effective length of database: 125,736,307
effective search space: 52557776326
effective search space used: 52557776326
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)