Query 009196
Match_columns 540
No_of_seqs 401 out of 2570
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 21:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2333 Uncharacterized conser 100.0 3E-132 6E-137 1034.1 33.7 480 1-534 128-614 (614)
2 COG0042 tRNA-dihydrouridine sy 100.0 1.8E-65 3.8E-70 531.0 31.5 313 178-517 2-319 (323)
3 PRK10415 tRNA-dihydrouridine s 100.0 5.1E-63 1.1E-67 512.7 32.1 312 179-517 2-318 (321)
4 PRK10550 tRNA-dihydrouridine s 100.0 1.5E-62 3.4E-67 507.0 31.1 299 188-515 2-310 (312)
5 PF01207 Dus: Dihydrouridine s 100.0 2.7E-63 5.8E-68 512.3 17.6 300 190-516 1-306 (309)
6 TIGR00742 yjbN tRNA dihydrouri 100.0 2E-61 4.3E-66 499.8 29.7 302 187-520 1-317 (318)
7 TIGR00737 nifR3_yhdG putative 100.0 6.7E-59 1.5E-63 481.1 33.7 312 180-518 1-317 (319)
8 PRK11815 tRNA-dihydrouridine s 100.0 4E-57 8.6E-62 470.8 29.5 310 180-521 4-328 (333)
9 KOG2335 tRNA-dihydrouridine sy 100.0 1.9E-53 4.2E-58 435.8 24.4 257 190-461 22-280 (358)
10 cd02801 DUS_like_FMN Dihydrour 100.0 8.9E-49 1.9E-53 385.1 23.9 229 188-421 1-229 (231)
11 cd02911 arch_FMN Archeal FMN-b 100.0 2.6E-41 5.5E-46 336.1 18.7 215 188-420 1-233 (233)
12 TIGR01037 pyrD_sub1_fam dihydr 100.0 2.5E-36 5.5E-41 309.6 22.1 230 178-421 3-279 (300)
13 cd04734 OYE_like_3_FMN Old yel 100.0 3.8E-35 8.2E-40 307.1 23.0 245 175-423 2-333 (343)
14 KOG2334 tRNA-dihydrouridine sy 100.0 5.1E-35 1.1E-39 303.1 21.1 254 181-448 5-280 (477)
15 TIGR00736 nifR3_rel_arch TIM-b 100.0 9.1E-34 2E-38 281.0 20.2 161 240-411 66-226 (231)
16 PRK13523 NADPH dehydrogenase N 100.0 1.7E-33 3.7E-38 293.9 21.3 246 174-424 3-324 (337)
17 cd04733 OYE_like_2_FMN Old yel 100.0 8.2E-33 1.8E-37 288.7 22.1 241 175-421 2-338 (338)
18 cd04735 OYE_like_4_FMN Old yel 100.0 2E-32 4.3E-37 287.6 20.6 247 175-424 2-332 (353)
19 cd02933 OYE_like_FMN Old yello 100.0 6.3E-32 1.4E-36 282.3 24.1 244 174-425 2-334 (338)
20 cd02940 DHPD_FMN Dihydropyrimi 100.0 4.8E-32 1E-36 278.6 22.8 234 178-421 4-298 (299)
21 cd04740 DHOD_1B_like Dihydroor 100.0 8.8E-32 1.9E-36 275.4 23.2 228 179-421 3-276 (296)
22 cd02803 OYE_like_FMN_family Ol 100.0 3.1E-32 6.7E-37 281.9 19.9 243 175-421 1-327 (327)
23 cd02931 ER_like_FMN Enoate red 100.0 2.1E-31 4.5E-36 282.6 24.1 248 174-425 1-355 (382)
24 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 1.5E-31 3.2E-36 280.9 21.3 246 175-424 2-325 (353)
25 cd02929 TMADH_HD_FMN Trimethyl 100.0 7.6E-31 1.7E-35 277.2 21.7 246 173-423 7-337 (370)
26 cd02932 OYE_YqiM_FMN Old yello 100.0 8.9E-31 1.9E-35 273.1 21.9 240 175-420 2-335 (336)
27 cd04747 OYE_like_5_FMN Old yel 100.0 1.1E-30 2.3E-35 274.9 22.2 244 175-424 2-347 (361)
28 PRK07259 dihydroorotate dehydr 100.0 3.2E-29 7E-34 257.4 23.8 229 178-421 4-279 (301)
29 PRK08318 dihydropyrimidine deh 100.0 1.7E-29 3.6E-34 270.9 21.8 233 178-421 6-299 (420)
30 PRK08255 salicylyl-CoA 5-hydro 100.0 1.7E-29 3.7E-34 289.0 22.6 245 172-420 397-733 (765)
31 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 1.1E-28 2.5E-33 251.3 23.2 232 179-420 2-288 (289)
32 COG1902 NemA NADH:flavin oxido 100.0 4.3E-28 9.2E-33 254.9 22.9 247 173-423 5-336 (363)
33 PRK10605 N-ethylmaleimide redu 100.0 1.7E-27 3.7E-32 251.1 24.1 248 174-428 3-344 (362)
34 cd04741 DHOD_1A_like Dihydroor 100.0 1.8E-27 3.9E-32 244.4 23.4 232 179-421 2-289 (294)
35 PF00724 Oxidored_FMN: NADH:fl 100.0 5.3E-28 1.1E-32 253.0 18.0 246 174-423 2-339 (341)
36 cd04738 DHOD_2_like Dihydrooro 99.9 1.8E-26 3.9E-31 240.2 22.6 232 177-421 40-326 (327)
37 PRK05286 dihydroorotate dehydr 99.9 6.5E-26 1.4E-30 237.6 21.4 232 177-421 50-335 (344)
38 PLN02411 12-oxophytodienoate r 99.9 1.1E-25 2.5E-30 239.4 22.8 250 172-426 10-363 (391)
39 cd04739 DHOD_like Dihydroorota 99.9 5.2E-25 1.1E-29 229.2 23.1 227 179-421 5-283 (325)
40 cd02809 alpha_hydroxyacid_oxid 99.9 4.6E-24 1E-28 219.5 22.5 228 179-448 57-291 (299)
41 PRK07565 dihydroorotate dehydr 99.9 1.1E-23 2.3E-28 219.9 22.5 228 178-421 5-285 (334)
42 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 3.5E-22 7.5E-27 210.5 15.9 182 178-410 36-221 (369)
43 PLN02495 oxidoreductase, actin 99.9 2.9E-21 6.2E-26 204.6 21.1 235 178-421 13-316 (385)
44 PRK02506 dihydroorotate dehydr 99.9 1.6E-20 3.5E-25 194.4 22.0 232 178-421 4-287 (310)
45 TIGR01036 pyrD_sub2 dihydrooro 99.9 3E-20 6.6E-25 194.3 21.1 232 177-421 47-334 (335)
46 COG0167 PyrD Dihydroorotate de 99.8 6.4E-20 1.4E-24 188.8 21.3 230 179-421 5-287 (310)
47 PF01180 DHO_dh: Dihydroorotat 99.8 2.4E-19 5.1E-24 184.0 19.4 230 179-421 5-290 (295)
48 TIGR02151 IPP_isom_2 isopenten 99.8 1.5E-17 3.4E-22 173.8 20.6 211 181-411 48-289 (333)
49 PLN02826 dihydroorotate dehydr 99.8 2.9E-17 6.4E-22 175.6 22.4 231 177-420 75-386 (409)
50 PRK05437 isopentenyl pyrophosp 99.8 6.9E-17 1.5E-21 170.1 21.6 212 182-411 56-296 (352)
51 PRK08649 inosine 5-monophospha 99.7 1.7E-17 3.7E-22 175.3 12.9 178 178-408 39-218 (368)
52 PRK14024 phosphoribosyl isomer 99.7 1.1E-16 2.5E-21 160.1 15.7 156 244-420 76-237 (241)
53 cd02811 IDI-2_FMN Isopentenyl- 99.7 1.6E-15 3.4E-20 158.3 20.9 211 181-410 47-289 (326)
54 cd04730 NPD_like 2-Nitropropan 99.6 1.8E-14 4E-19 142.3 17.5 188 186-414 2-194 (236)
55 cd04722 TIM_phosphate_binding 99.6 7.7E-14 1.7E-18 130.8 18.3 192 189-406 1-200 (200)
56 PRK01033 imidazole glycerol ph 99.6 6.2E-14 1.3E-18 141.8 15.0 153 245-419 76-240 (258)
57 PRK00748 1-(5-phosphoribosyl)- 99.6 1.2E-13 2.5E-18 136.7 16.5 147 244-411 75-226 (233)
58 PRK04180 pyridoxal biosynthesi 99.5 1.6E-14 3.5E-19 146.4 9.3 139 257-413 27-242 (293)
59 cd04732 HisA HisA. Phosphorib 99.5 2E-13 4.4E-18 134.9 16.9 153 243-417 73-231 (234)
60 TIGR02708 L_lactate_ox L-lacta 99.5 5.3E-13 1.2E-17 140.9 20.3 209 182-410 76-317 (367)
61 PRK13585 1-(5-phosphoribosyl)- 99.5 4.2E-13 9.2E-18 133.5 17.5 156 243-420 76-237 (241)
62 cd00381 IMPDH IMPDH: The catal 99.5 9.9E-13 2.1E-17 137.4 19.9 198 182-415 30-236 (325)
63 cd04731 HisF The cyclase subun 99.5 4.8E-13 1E-17 133.6 15.5 153 246-419 74-237 (243)
64 TIGR00007 phosphoribosylformim 99.5 9.8E-13 2.1E-17 130.1 17.0 179 207-411 38-224 (230)
65 PRK02083 imidazole glycerol ph 99.5 3.4E-12 7.4E-17 128.4 19.5 182 204-411 37-233 (253)
66 TIGR03572 WbuZ glycosyl amidat 99.5 8E-13 1.7E-17 131.1 14.2 141 246-408 77-230 (232)
67 cd04737 LOX_like_FMN L-Lactate 99.4 4E-12 8.6E-17 133.9 17.8 212 181-412 67-312 (351)
68 cd02922 FCB2_FMN Flavocytochro 99.4 1.4E-11 2.9E-16 129.7 21.4 212 182-413 60-308 (344)
69 TIGR03151 enACPred_II putative 99.4 8.1E-12 1.7E-16 129.6 18.8 189 183-413 8-198 (307)
70 TIGR00735 hisF imidazoleglycer 99.4 1.8E-11 3.9E-16 123.5 19.6 179 207-411 40-235 (254)
71 PRK05458 guanosine 5'-monophos 99.3 2.2E-10 4.7E-15 119.6 20.5 189 182-410 33-235 (326)
72 KOG0134 NADH:flavin oxidoreduc 99.2 1.2E-10 2.5E-15 123.0 13.2 168 253-423 173-366 (400)
73 PF01070 FMN_dh: FMN-dependent 99.2 9.8E-10 2.1E-14 116.3 17.1 211 179-410 51-314 (356)
74 TIGR01306 GMP_reduct_2 guanosi 99.1 4.1E-09 9E-14 109.8 21.1 191 182-410 30-232 (321)
75 PLN02979 glycolate oxidase 99.1 7.1E-09 1.5E-13 109.3 20.3 241 179-448 62-342 (366)
76 PRK11197 lldD L-lactate dehydr 99.1 4.5E-09 9.8E-14 111.9 18.6 239 181-448 65-364 (381)
77 cd03332 LMO_FMN L-Lactate 2-mo 99.1 3.5E-09 7.7E-14 112.8 17.8 210 180-409 79-341 (383)
78 COG0106 HisA Phosphoribosylfor 99.1 2.4E-09 5.2E-14 106.7 15.0 154 241-418 73-234 (241)
79 cd04736 MDH_FMN Mandelate dehy 99.1 4E-09 8.6E-14 111.6 17.3 235 182-447 60-352 (361)
80 PLN02535 glycolate oxidase 99.1 2E-08 4.4E-13 106.4 22.0 241 179-448 65-342 (364)
81 PRK02083 imidazole glycerol ph 99.0 7E-10 1.5E-14 111.7 10.0 90 327-421 30-119 (253)
82 PLN02493 probable peroxisomal 99.0 9.6E-09 2.1E-13 108.8 18.0 240 180-448 64-343 (367)
83 cd04731 HisF The cyclase subun 99.0 1.1E-09 2.4E-14 109.4 9.9 89 327-420 27-115 (243)
84 KOG1436 Dihydroorotate dehydro 99.0 2.2E-08 4.7E-13 102.5 16.2 226 181-420 89-376 (398)
85 TIGR01919 hisA-trpF 1-(5-phosp 98.9 8.5E-08 1.8E-12 96.6 18.6 161 233-418 64-238 (243)
86 PRK06843 inosine 5-monophospha 98.9 1.1E-07 2.4E-12 102.0 19.9 135 250-412 149-292 (404)
87 cd04729 NanE N-acetylmannosami 98.9 2.4E-08 5.2E-13 98.5 13.6 127 261-416 86-216 (219)
88 cd00945 Aldolase_Class_I Class 98.9 2.5E-07 5.4E-12 87.9 19.6 148 241-405 48-201 (201)
89 cd04732 HisA HisA. Phosphorib 98.9 1.5E-08 3.2E-13 100.3 11.2 89 327-421 29-118 (234)
90 KOG1799 Dihydropyrimidine dehy 98.9 4.4E-09 9.5E-14 108.4 7.5 179 251-446 215-418 (471)
91 cd03319 L-Ala-DL-Glu_epimerase 98.8 9.9E-08 2.1E-12 99.0 17.2 138 238-405 120-258 (316)
92 TIGR01305 GMP_reduct_1 guanosi 98.8 2.9E-07 6.4E-12 95.9 20.5 205 170-408 29-244 (343)
93 TIGR00735 hisF imidazoleglycer 98.8 1.9E-08 4.1E-13 101.6 9.9 89 327-420 30-118 (254)
94 PLN02446 (5-phosphoribosyl)-5- 98.8 2E-07 4.4E-12 94.6 16.5 147 242-409 82-242 (262)
95 cd02808 GltS_FMN Glutamate syn 98.8 6E-07 1.3E-11 96.4 21.0 110 295-411 197-320 (392)
96 PF00478 IMPDH: IMP dehydrogen 98.8 5.9E-08 1.3E-12 102.3 12.2 197 181-410 32-245 (352)
97 PF03060 NMO: Nitronate monoox 98.8 4.7E-07 1E-11 95.0 18.9 191 183-413 8-227 (330)
98 PRK13125 trpA tryptophan synth 98.8 1.9E-07 4.2E-12 93.9 15.3 147 251-410 15-219 (244)
99 KOG0538 Glycolate oxidase [Ene 98.7 1.4E-06 3E-11 89.2 21.1 238 182-447 64-341 (363)
100 PRK01130 N-acetylmannosamine-6 98.7 1.7E-07 3.7E-12 92.5 14.3 122 261-410 82-207 (221)
101 cd04728 ThiG Thiazole synthase 98.7 9.5E-07 2.1E-11 88.5 19.0 203 179-409 2-208 (248)
102 PF00977 His_biosynth: Histidi 98.7 1.3E-07 2.9E-12 94.2 12.5 180 207-411 39-226 (229)
103 PRK13587 1-(5-phosphoribosyl)- 98.7 7.7E-07 1.7E-11 89.2 17.5 143 244-410 77-226 (234)
104 cd00331 IGPS Indole-3-glycerol 98.6 5.2E-06 1.1E-10 81.7 20.8 175 204-418 38-214 (217)
105 PRK05096 guanosine 5'-monophos 98.6 1.8E-06 3.9E-11 90.2 17.3 197 182-412 42-249 (346)
106 PRK00208 thiG thiazole synthas 98.6 2.8E-06 6.1E-11 85.3 17.7 204 178-410 2-209 (250)
107 cd04727 pdxS PdxS is a subunit 98.5 8.9E-07 1.9E-11 90.3 13.1 181 196-413 14-233 (283)
108 cd04723 HisA_HisF Phosphoribos 98.5 4.9E-06 1.1E-10 83.3 17.6 183 207-417 45-230 (233)
109 PRK14114 1-(5-phosphoribosyl)- 98.5 2.3E-06 5E-11 86.2 15.3 152 244-418 74-236 (241)
110 TIGR02129 hisA_euk phosphoribo 98.5 3.2E-06 6.9E-11 85.6 16.3 146 243-410 76-237 (253)
111 COG1304 idi Isopentenyl diphos 98.5 7.4E-07 1.6E-11 94.5 12.0 146 294-459 201-346 (360)
112 TIGR00343 pyridoxal 5'-phospha 98.5 3.5E-06 7.6E-11 86.0 15.5 135 260-412 23-235 (287)
113 PRK13586 1-(5-phosphoribosyl)- 98.4 3.9E-06 8.5E-11 84.1 14.7 142 245-411 75-224 (232)
114 TIGR03572 WbuZ glycosyl amidat 98.4 1.2E-06 2.6E-11 86.9 10.2 90 327-421 30-119 (232)
115 TIGR00734 hisAF_rel hisA/hisF 98.4 2.4E-05 5.3E-10 77.8 19.3 133 246-410 80-218 (221)
116 PRK00748 1-(5-phosphoribosyl)- 98.4 1.8E-06 3.9E-11 85.5 10.9 102 315-421 14-119 (233)
117 cd04743 NPD_PKS 2-Nitropropane 98.4 1.1E-05 2.4E-10 84.4 17.0 190 186-414 2-211 (320)
118 COG0107 HisF Imidazoleglycerol 98.4 1.5E-05 3.2E-10 79.1 16.3 197 179-405 17-229 (256)
119 PF04131 NanE: Putative N-acet 98.4 2.8E-06 6E-11 82.2 11.0 130 255-417 53-184 (192)
120 COG2070 Dioxygenases related t 98.3 5.7E-06 1.2E-10 87.2 13.4 194 179-411 7-219 (336)
121 PLN02617 imidazole glycerol ph 98.3 1.7E-05 3.6E-10 88.4 17.4 162 232-405 303-512 (538)
122 TIGR00262 trpA tryptophan synt 98.3 1.7E-05 3.6E-10 80.7 15.3 157 243-409 11-231 (256)
123 PRK13585 1-(5-phosphoribosyl)- 98.3 3.1E-06 6.7E-11 84.4 9.4 88 328-421 33-121 (241)
124 cd04724 Tryptophan_synthase_al 98.3 1.4E-05 3.1E-10 80.4 14.1 148 251-409 11-219 (242)
125 cd03315 MLE_like Muconate lact 98.3 3.6E-05 7.8E-10 78.0 17.0 134 242-405 75-210 (265)
126 PTZ00314 inosine-5'-monophosph 98.3 1.9E-05 4.2E-10 87.3 16.0 135 249-410 236-378 (495)
127 TIGR01302 IMP_dehydrog inosine 98.3 1.5E-05 3.3E-10 87.1 15.0 142 250-418 220-369 (450)
128 PRK07107 inosine 5-monophospha 98.2 1.4E-05 2.9E-10 88.6 14.3 133 254-411 242-387 (502)
129 TIGR01163 rpe ribulose-phospha 98.2 2.7E-05 5.9E-10 75.5 14.7 150 246-419 3-207 (210)
130 PRK00278 trpC indole-3-glycero 98.2 0.00012 2.7E-09 74.5 20.1 178 203-419 76-254 (260)
131 cd03316 MR_like Mandelate race 98.2 2.2E-05 4.8E-10 82.7 15.1 140 242-405 127-270 (357)
132 PRK04128 1-(5-phosphoribosyl)- 98.2 5.5E-05 1.2E-09 75.6 17.1 141 244-417 74-223 (228)
133 TIGR01949 AroFGH_arch predicte 98.2 6.8E-05 1.5E-09 76.0 17.8 196 185-419 23-241 (258)
134 TIGR01769 GGGP geranylgeranylg 98.2 6.3E-05 1.4E-09 74.2 16.5 130 254-405 11-205 (205)
135 cd04742 NPD_FabD 2-Nitropropan 98.2 8.1E-05 1.7E-09 80.5 18.6 211 183-413 10-256 (418)
136 CHL00200 trpA tryptophan synth 98.2 4E-05 8.6E-10 78.3 15.1 158 243-410 16-236 (263)
137 PLN02274 inosine-5'-monophosph 98.2 2.9E-05 6.4E-10 86.0 15.1 133 250-411 244-386 (505)
138 PRK08649 inosine 5-monophospha 98.1 6.8E-05 1.5E-09 80.1 16.4 139 253-413 140-293 (368)
139 TIGR01304 IMP_DH_rel_2 IMP deh 98.1 3.5E-05 7.6E-10 82.2 14.2 138 253-412 141-291 (369)
140 cd00958 DhnA Class I fructose- 98.1 0.00012 2.6E-09 72.8 17.0 196 185-419 6-228 (235)
141 PRK04128 1-(5-phosphoribosyl)- 98.1 1.2E-05 2.6E-10 80.4 9.5 99 315-420 15-116 (228)
142 PF01645 Glu_synthase: Conserv 98.1 2.8E-05 6.2E-10 82.7 11.8 111 294-411 185-309 (368)
143 cd00429 RPE Ribulose-5-phospha 98.1 0.00012 2.5E-09 70.9 15.1 154 244-419 2-208 (211)
144 PRK14024 phosphoribosyl isomer 98.1 2.7E-05 5.8E-10 78.3 10.7 87 328-420 33-119 (241)
145 TIGR03128 RuMP_HxlA 3-hexulose 98.0 0.00048 1E-08 67.0 18.9 183 203-417 15-198 (206)
146 PRK01033 imidazole glycerol ph 98.0 3.3E-05 7.1E-10 78.5 10.8 89 327-420 30-118 (258)
147 PLN02591 tryptophan synthase 98.0 0.00016 3.4E-09 73.4 15.5 149 251-409 13-222 (250)
148 TIGR02814 pfaD_fam PfaD family 98.0 0.00035 7.6E-09 76.1 18.5 210 183-413 15-261 (444)
149 TIGR00007 phosphoribosylformim 98.0 5.3E-05 1.1E-09 75.0 11.3 102 315-421 12-117 (230)
150 TIGR00259 thylakoid_BtpA membr 97.9 0.00072 1.6E-08 68.9 18.7 186 208-413 39-234 (257)
151 PRK07695 transcriptional regul 97.9 0.00024 5.2E-09 69.2 14.8 76 332-413 107-185 (201)
152 PRK05567 inosine 5'-monophosph 97.9 0.00019 4.2E-09 79.2 15.8 137 247-410 221-365 (486)
153 PF05690 ThiG: Thiazole biosyn 97.9 0.002 4.2E-08 64.6 20.8 204 179-411 1-210 (247)
154 COG0107 HisF Imidazoleglycerol 97.9 4.1E-05 8.9E-10 76.0 9.0 88 328-420 31-118 (256)
155 PRK13111 trpA tryptophan synth 97.9 0.00035 7.5E-09 71.3 15.0 156 243-409 13-232 (258)
156 KOG2334 tRNA-dihydrouridine sy 97.9 1.1E-06 2.3E-11 93.2 -3.5 215 183-418 198-424 (477)
157 PF03437 BtpA: BtpA family; I 97.8 0.00085 1.9E-08 68.2 17.1 188 208-416 40-238 (254)
158 TIGR01303 IMP_DH_rel_1 IMP deh 97.8 0.00023 5E-09 78.5 13.7 138 244-410 215-362 (475)
159 PLN02334 ribulose-phosphate 3- 97.8 0.0016 3.5E-08 64.9 18.4 147 240-418 64-215 (229)
160 PRK07807 inosine 5-monophospha 97.8 0.00021 4.5E-09 78.9 13.1 143 247-416 220-370 (479)
161 PRK13587 1-(5-phosphoribosyl)- 97.8 0.00013 2.9E-09 73.2 10.5 89 328-421 32-121 (234)
162 PRK05581 ribulose-phosphate 3- 97.8 0.00076 1.6E-08 66.0 15.4 155 244-419 6-212 (220)
163 PRK07226 fructose-bisphosphate 97.8 0.00055 1.2E-08 69.9 14.7 136 257-418 96-244 (267)
164 PRK00507 deoxyribose-phosphate 97.8 0.00081 1.7E-08 67.1 15.4 129 259-408 79-211 (221)
165 TIGR01768 GGGP-family geranylg 97.8 0.00067 1.4E-08 67.8 14.6 59 357-418 163-221 (223)
166 PF00977 His_biosynth: Histidi 97.8 8E-05 1.7E-09 74.4 8.1 89 327-420 29-117 (229)
167 CHL00162 thiG thiamin biosynth 97.8 0.004 8.6E-08 63.1 20.0 207 177-409 7-222 (267)
168 PTZ00170 D-ribulose-5-phosphat 97.7 0.0015 3.4E-08 65.2 16.7 148 242-413 7-209 (228)
169 PRK08883 ribulose-phosphate 3- 97.7 0.001 2.2E-08 66.3 15.2 146 245-413 3-203 (220)
170 cd00405 PRAI Phosphoribosylant 97.7 0.0021 4.6E-08 62.7 16.8 182 195-414 4-190 (203)
171 COG3010 NanE Putative N-acetyl 97.7 0.00077 1.7E-08 66.1 13.4 118 266-413 96-216 (229)
172 TIGR02129 hisA_euk phosphoribo 97.6 0.00023 5.1E-09 72.2 9.5 79 330-420 41-123 (253)
173 PF00290 Trp_syntA: Tryptophan 97.6 0.00047 1E-08 70.4 10.7 157 242-409 10-230 (259)
174 COG0214 SNZ1 Pyridoxine biosyn 97.6 0.00076 1.6E-08 67.2 11.6 133 260-410 33-242 (296)
175 TIGR01919 hisA-trpF 1-(5-phosp 97.5 0.00069 1.5E-08 68.5 10.5 87 328-420 32-118 (243)
176 PRK13586 1-(5-phosphoribosyl)- 97.5 0.00063 1.4E-08 68.3 10.2 87 328-420 31-117 (232)
177 PRK14114 1-(5-phosphoribosyl)- 97.5 0.00049 1.1E-08 69.5 9.2 88 327-420 30-117 (241)
178 TIGR00126 deoC deoxyribose-pho 97.5 0.0028 6E-08 62.9 14.2 127 261-405 77-204 (211)
179 cd00564 TMP_TenI Thiamine mono 97.5 0.0008 1.7E-08 63.8 10.0 81 333-418 108-191 (196)
180 cd04726 KGPDC_HPS 3-Keto-L-gul 97.4 0.0082 1.8E-07 57.9 17.1 154 232-417 44-198 (202)
181 COG0106 HisA Phosphoribosylfor 97.4 0.00066 1.4E-08 68.2 9.5 114 327-445 31-163 (241)
182 cd00377 ICL_PEPM Members of th 97.4 0.02 4.3E-07 57.9 20.3 201 187-409 8-230 (243)
183 cd00959 DeoC 2-deoxyribose-5-p 97.4 0.0037 8.1E-08 61.2 14.5 131 254-402 69-200 (203)
184 KOG1606 Stationary phase-induc 97.4 0.0013 2.8E-08 64.6 10.8 142 260-419 34-252 (296)
185 cd04723 HisA_HisF Phosphoribos 97.4 0.00071 1.5E-08 67.7 9.3 87 328-421 36-122 (233)
186 cd00452 KDPG_aldolase KDPG and 97.4 0.0063 1.4E-07 58.9 15.5 145 243-409 5-175 (190)
187 PRK08005 epimerase; Validated 97.4 0.0096 2.1E-07 59.1 16.9 151 244-418 3-204 (210)
188 PRK09140 2-dehydro-3-deoxy-6-p 97.3 0.0093 2E-07 58.9 16.3 150 243-413 11-187 (206)
189 PRK07028 bifunctional hexulose 97.3 0.0044 9.5E-08 67.5 15.3 137 246-415 64-200 (430)
190 PLN02446 (5-phosphoribosyl)-5- 97.3 0.0008 1.7E-08 68.7 8.9 84 327-420 43-130 (262)
191 cd06556 ICL_KPHMT Members of t 97.3 0.0059 1.3E-07 61.7 15.0 158 188-383 12-200 (240)
192 PRK13957 indole-3-glycerol-pho 97.3 0.0063 1.4E-07 61.8 15.1 148 251-420 61-245 (247)
193 PRK11840 bifunctional sulfur c 97.3 0.021 4.7E-07 59.9 19.3 204 176-410 73-283 (326)
194 PF00218 IGPS: Indole-3-glycer 97.3 0.0033 7.2E-08 64.0 13.1 62 357-420 192-253 (254)
195 COG0159 TrpA Tryptophan syntha 97.3 0.017 3.6E-07 59.1 17.6 156 243-409 18-237 (265)
196 PTZ00314 inosine-5'-monophosph 97.3 0.0078 1.7E-07 66.9 16.3 70 328-405 241-310 (495)
197 PRK13307 bifunctional formalde 97.3 0.014 3E-07 63.0 17.7 152 232-415 217-368 (391)
198 COG0036 Rpe Pentose-5-phosphat 97.2 0.0077 1.7E-07 59.9 14.2 154 242-418 4-210 (220)
199 PRK00043 thiE thiamine-phospha 97.2 0.002 4.2E-08 62.6 9.9 78 333-414 117-197 (212)
200 PRK06806 fructose-bisphosphate 97.2 0.0067 1.5E-07 62.7 14.3 80 328-412 154-237 (281)
201 PRK00311 panB 3-methyl-2-oxobu 97.2 0.0081 1.7E-07 61.6 14.7 157 188-381 15-203 (264)
202 cd02812 PcrB_like PcrB_like pr 97.2 0.002 4.4E-08 64.2 9.8 87 324-419 132-218 (219)
203 PLN02617 imidazole glycerol ph 97.2 0.0013 2.8E-08 73.6 9.2 90 327-420 267-381 (538)
204 TIGR00734 hisAF_rel hisA/hisF 97.1 0.0019 4.2E-08 64.3 9.0 87 327-419 36-122 (221)
205 PRK07565 dihydroorotate dehydr 97.1 0.0043 9.3E-08 65.4 11.8 102 296-404 86-196 (334)
206 COG2022 ThiG Uncharacterized e 97.1 0.052 1.1E-06 54.4 18.1 206 177-409 7-215 (262)
207 cd00377 ICL_PEPM Members of th 97.0 0.005 1.1E-07 62.2 11.0 153 260-420 22-193 (243)
208 PRK08745 ribulose-phosphate 3- 97.0 0.033 7.1E-07 55.8 16.4 147 244-413 6-207 (223)
209 TIGR00693 thiE thiamine-phosph 97.0 0.0049 1.1E-07 59.4 9.9 75 335-414 111-189 (196)
210 PRK05283 deoxyribose-phosphate 97.0 0.017 3.6E-07 59.0 14.0 127 266-415 94-227 (257)
211 cd03329 MR_like_4 Mandelate ra 97.0 0.02 4.4E-07 61.0 15.4 125 252-404 143-270 (368)
212 PRK06552 keto-hydroxyglutarate 96.9 0.02 4.4E-07 56.9 14.1 145 243-409 14-187 (213)
213 cd06557 KPHMT-like Ketopantoat 96.9 0.022 4.7E-07 58.2 14.5 160 188-382 12-201 (254)
214 PRK06801 hypothetical protein; 96.9 0.046 1E-06 56.7 17.0 76 330-410 159-238 (286)
215 PRK04302 triosephosphate isome 96.9 0.02 4.4E-07 56.8 13.8 131 260-417 78-214 (223)
216 TIGR01859 fruc_bis_ald_ fructo 96.9 0.025 5.4E-07 58.5 14.9 76 329-409 155-234 (282)
217 PF01791 DeoC: DeoC/LacD famil 96.9 0.0023 4.9E-08 64.0 7.0 135 258-410 80-235 (236)
218 PF04481 DUF561: Protein of un 96.9 0.013 2.7E-07 58.2 11.6 139 250-408 68-217 (242)
219 PRK04169 geranylgeranylglycery 96.8 0.003 6.4E-08 63.6 7.3 75 338-419 152-228 (232)
220 PLN02424 ketopantoate hydroxym 96.8 0.022 4.7E-07 60.0 13.8 155 194-381 39-224 (332)
221 PRK07315 fructose-bisphosphate 96.8 0.028 6E-07 58.5 14.6 75 333-411 159-238 (293)
222 PRK11750 gltB glutamate syntha 96.8 0.0037 7.9E-08 76.2 9.0 111 295-413 979-1104(1485)
223 PRK07455 keto-hydroxyglutarate 96.8 0.031 6.7E-07 54.3 13.8 146 243-410 13-185 (187)
224 COG0434 SgcQ Predicted TIM-bar 96.8 0.065 1.4E-06 54.0 15.9 190 199-408 34-235 (263)
225 PF00834 Ribul_P_3_epim: Ribul 96.8 0.0088 1.9E-07 58.9 9.9 145 244-411 2-200 (201)
226 TIGR00222 panB 3-methyl-2-oxob 96.8 0.046 1E-06 56.0 15.3 152 195-381 20-202 (263)
227 COG0134 TrpC Indole-3-glycerol 96.7 0.023 5E-07 57.8 12.6 118 301-420 97-251 (254)
228 COG0274 DeoC Deoxyribose-phosp 96.7 0.023 5E-07 56.7 11.9 119 266-401 88-208 (228)
229 cd00408 DHDPS-like Dihydrodipi 96.6 0.033 7.2E-07 56.8 13.2 133 252-402 16-156 (281)
230 cd03321 mandelate_racemase Man 96.6 0.039 8.6E-07 58.5 14.1 134 243-405 132-267 (355)
231 PRK13802 bifunctional indole-3 96.5 0.059 1.3E-06 62.2 16.0 148 252-420 71-255 (695)
232 TIGR02320 PEP_mutase phosphoen 96.5 0.14 3.1E-06 53.1 17.3 199 188-409 9-244 (285)
233 TIGR02317 prpB methylisocitrat 96.5 0.5 1.1E-05 49.1 21.0 203 186-410 11-234 (285)
234 PRK11320 prpB 2-methylisocitra 96.5 0.44 9.6E-06 49.7 20.5 203 186-409 15-238 (292)
235 COG1646 Predicted phosphate-bi 96.5 0.089 1.9E-06 52.8 14.6 143 256-419 30-234 (240)
236 KOG2550 IMP dehydrogenase/GMP 96.4 0.03 6.5E-07 60.1 11.6 69 331-407 254-322 (503)
237 PRK08227 autoinducer 2 aldolas 96.4 0.34 7.3E-06 49.8 19.0 213 185-436 29-260 (264)
238 cd06556 ICL_KPHMT Members of t 96.4 0.044 9.6E-07 55.5 12.4 143 260-421 25-189 (240)
239 COG0352 ThiE Thiamine monophos 96.3 0.027 5.8E-07 56.0 10.2 84 331-420 115-201 (211)
240 PRK08091 ribulose-phosphate 3- 96.3 0.22 4.8E-06 50.1 16.8 148 242-414 13-216 (228)
241 PRK02615 thiamine-phosphate py 96.3 0.023 5E-07 60.5 10.2 77 333-415 253-332 (347)
242 PRK06512 thiamine-phosphate py 96.3 0.024 5.2E-07 56.6 9.7 80 334-418 125-205 (221)
243 PLN02274 inosine-5'-monophosph 96.3 0.075 1.6E-06 59.3 14.5 70 328-405 248-317 (505)
244 cd04727 pdxS PdxS is a subunit 96.3 0.044 9.6E-07 56.4 11.6 117 260-403 21-137 (283)
245 TIGR01182 eda Entner-Doudoroff 96.2 0.081 1.7E-06 52.3 12.4 149 242-413 8-184 (204)
246 TIGR02319 CPEP_Pphonmut carbox 96.1 0.81 1.8E-05 47.8 20.4 205 186-409 14-237 (294)
247 PF02581 TMP-TENI: Thiamine mo 96.1 0.021 4.6E-07 54.7 8.0 70 333-408 108-180 (180)
248 PRK03512 thiamine-phosphate py 96.1 0.045 9.7E-07 54.2 10.4 83 333-419 115-200 (211)
249 cd06557 KPHMT-like Ketopantoat 96.0 0.066 1.4E-06 54.7 11.6 142 260-420 25-190 (254)
250 PRK05718 keto-hydroxyglutarate 96.0 0.09 1.9E-06 52.3 12.0 150 242-413 15-190 (212)
251 cd00945 Aldolase_Class_I Class 95.9 0.091 2E-06 49.7 11.4 132 252-407 11-151 (201)
252 cd00381 IMPDH IMPDH: The catal 95.9 0.055 1.2E-06 57.0 10.7 94 297-405 70-163 (325)
253 COG0269 SgbH 3-hexulose-6-phos 95.9 0.32 6.9E-06 48.4 15.1 152 233-413 48-200 (217)
254 PRK09722 allulose-6-phosphate 95.9 0.39 8.4E-06 48.4 16.1 143 243-409 4-201 (229)
255 COG0069 GltB Glutamate synthas 95.9 0.045 9.7E-07 60.3 10.0 107 296-410 287-408 (485)
256 PRK14057 epimerase; Provisiona 95.8 0.47 1E-05 48.5 16.5 148 241-413 19-229 (254)
257 PRK05437 isopentenyl pyrophosp 95.8 0.064 1.4E-06 57.1 10.8 112 287-405 96-217 (352)
258 PF13714 PEP_mutase: Phosphoen 95.7 0.12 2.7E-06 52.1 12.0 195 186-409 7-223 (238)
259 PRK11320 prpB 2-methylisocitra 95.6 0.14 3.1E-06 53.3 12.1 152 260-420 30-199 (292)
260 cd03328 MR_like_3 Mandelate ra 95.6 0.21 4.6E-06 53.0 13.7 123 252-404 138-264 (352)
261 TIGR02320 PEP_mutase phosphoen 95.6 0.17 3.6E-06 52.6 12.4 107 296-405 63-189 (285)
262 cd03325 D-galactonate_dehydrat 95.5 0.32 6.9E-06 51.6 14.9 142 243-405 114-257 (352)
263 PRK13957 indole-3-glycerol-pho 95.5 0.073 1.6E-06 54.1 9.4 76 327-410 61-136 (247)
264 cd03324 rTSbeta_L-fuconate_deh 95.5 0.32 7E-06 53.0 14.8 127 250-404 194-323 (415)
265 COG0329 DapA Dihydrodipicolina 95.4 0.46 1E-05 49.5 15.3 131 251-402 22-163 (299)
266 COG4948 L-alanine-DL-glutamate 95.4 0.25 5.5E-06 52.6 13.7 124 252-404 143-268 (372)
267 TIGR02317 prpB methylisocitrat 95.4 0.17 3.6E-06 52.6 11.9 151 260-420 26-194 (285)
268 KOG2550 IMP dehydrogenase/GMP 95.4 0.08 1.7E-06 57.0 9.4 120 261-410 257-387 (503)
269 PF00701 DHDPS: Dihydrodipicol 95.4 2.8 6.1E-05 43.0 20.7 149 239-420 68-219 (289)
270 PF13714 PEP_mutase: Phosphoen 95.4 0.083 1.8E-06 53.4 9.2 133 259-405 21-175 (238)
271 TIGR02151 IPP_isom_2 isopenten 95.4 0.14 3E-06 54.2 11.2 112 287-405 89-210 (333)
272 cd00950 DHDPS Dihydrodipicolin 95.3 0.23 4.9E-06 50.9 12.5 134 252-403 19-160 (284)
273 cd03326 MR_like_1 Mandelate ra 95.3 0.36 7.8E-06 52.1 14.5 124 252-404 160-289 (385)
274 PRK09195 gatY tagatose-bisphos 95.3 0.71 1.5E-05 48.0 16.0 119 286-409 104-236 (284)
275 cd00331 IGPS Indole-3-glycerol 95.3 0.086 1.9E-06 51.8 9.0 77 326-410 30-106 (217)
276 COG2513 PrpB PEP phosphonomuta 95.3 0.17 3.6E-06 52.4 11.2 152 259-421 30-200 (289)
277 TIGR02321 Pphn_pyruv_hyd phosp 95.3 0.18 4E-06 52.4 11.7 153 259-420 27-200 (290)
278 cd00952 CHBPH_aldolase Trans-o 95.3 0.34 7.4E-06 50.6 13.8 123 252-393 27-160 (309)
279 TIGR03249 KdgD 5-dehydro-4-deo 95.3 0.28 6E-06 50.9 13.1 131 252-403 24-162 (296)
280 PRK13397 3-deoxy-7-phosphohept 95.3 0.47 1E-05 48.4 14.2 106 289-405 105-219 (250)
281 PRK12595 bifunctional 3-deoxy- 95.2 0.42 9E-06 51.3 14.4 114 289-415 208-330 (360)
282 PF00478 IMPDH: IMP dehydrogen 95.2 0.061 1.3E-06 57.3 8.0 83 313-406 96-178 (352)
283 PF01884 PcrB: PcrB family; I 95.2 0.034 7.3E-07 55.9 5.7 68 339-413 152-219 (230)
284 TIGR02534 mucon_cyclo muconate 95.2 0.73 1.6E-05 49.1 16.1 134 242-404 131-267 (368)
285 TIGR01361 DAHP_synth_Bsub phos 95.1 0.56 1.2E-05 48.0 14.6 108 289-407 115-231 (260)
286 PRK07998 gatY putative fructos 95.1 0.51 1.1E-05 49.0 14.3 149 241-410 74-234 (283)
287 PF02548 Pantoate_transf: Keto 95.1 0.52 1.1E-05 48.3 14.0 155 194-382 20-205 (261)
288 cd03322 rpsA The starvation se 95.1 0.5 1.1E-05 50.3 14.6 121 248-405 122-244 (361)
289 TIGR02321 Pphn_pyruv_hyd phosp 95.1 5.2 0.00011 41.7 21.9 206 186-409 13-239 (290)
290 PRK06015 keto-hydroxyglutarate 95.0 0.46 1E-05 47.0 13.1 147 242-409 4-176 (201)
291 cd00954 NAL N-Acetylneuraminic 95.0 0.46 9.9E-06 49.0 13.7 131 252-402 19-161 (288)
292 PRK14017 galactonate dehydrata 95.0 0.56 1.2E-05 50.3 14.8 142 243-405 115-258 (382)
293 PRK06852 aldolase; Validated 95.0 3.3 7.1E-05 43.6 19.9 107 299-414 156-274 (304)
294 PRK07259 dihydroorotate dehydr 95.0 0.59 1.3E-05 48.4 14.4 130 266-404 34-188 (301)
295 PRK07709 fructose-bisphosphate 94.9 1.3 2.7E-05 46.2 16.6 113 291-408 112-236 (285)
296 cd04740 DHOD_1B_like Dihydroor 94.9 0.65 1.4E-05 47.8 14.6 96 303-404 81-185 (296)
297 PLN02424 ketopantoate hydroxym 94.9 0.45 9.7E-06 50.3 13.3 105 260-378 48-155 (332)
298 cd04729 NanE N-acetylmannosami 94.9 0.64 1.4E-05 45.8 13.9 134 241-405 10-150 (219)
299 TIGR02313 HpaI-NOT-DapA 2,4-di 94.9 0.47 1E-05 49.2 13.5 135 252-405 19-164 (294)
300 PRK03170 dihydrodipicolinate s 94.9 0.58 1.3E-05 48.2 14.1 130 252-402 20-160 (292)
301 PRK00311 panB 3-methyl-2-oxobu 94.9 0.25 5.3E-06 50.8 11.1 104 260-378 28-134 (264)
302 TIGR02319 CPEP_Pphonmut carbox 94.9 0.26 5.7E-06 51.4 11.4 152 259-420 28-198 (294)
303 cd03327 MR_like_2 Mandelate ra 94.8 0.6 1.3E-05 49.3 14.1 133 250-405 118-252 (341)
304 cd04739 DHOD_like Dihydroorota 94.8 0.29 6.3E-06 51.6 11.6 103 298-406 86-197 (325)
305 PRK12290 thiE thiamine-phospha 94.8 0.17 3.8E-06 55.2 10.1 82 334-418 314-405 (437)
306 cd03323 D-glucarate_dehydratas 94.7 0.53 1.2E-05 50.9 13.8 122 252-404 168-290 (395)
307 PRK08610 fructose-bisphosphate 94.7 0.9 1.9E-05 47.3 14.8 118 286-408 107-236 (286)
308 TIGR00674 dapA dihydrodipicoli 94.7 0.44 9.5E-06 49.0 12.5 129 252-401 17-156 (285)
309 cd02811 IDI-2_FMN Isopentenyl- 94.7 0.25 5.5E-06 52.0 11.0 112 287-405 88-209 (326)
310 cd02809 alpha_hydroxyacid_oxid 94.7 0.34 7.3E-06 50.3 11.7 84 312-404 116-199 (299)
311 PRK03620 5-dehydro-4-deoxygluc 94.7 0.7 1.5E-05 48.1 14.1 130 252-402 26-163 (303)
312 PRK12737 gatY tagatose-bisphos 94.6 1.4 3E-05 45.8 15.9 114 291-409 109-236 (284)
313 PRK05848 nicotinate-nucleotide 94.6 0.42 9.1E-06 49.4 11.9 93 299-413 168-265 (273)
314 TIGR00683 nanA N-acetylneurami 94.5 0.76 1.6E-05 47.6 13.8 130 252-401 19-160 (290)
315 COG1830 FbaB DhnA-type fructos 94.5 1.4 3E-05 45.3 15.2 184 193-413 38-245 (265)
316 PRK08185 hypothetical protein; 94.4 1.3 2.8E-05 46.1 14.9 111 294-409 106-232 (283)
317 TIGR00078 nadC nicotinate-nucl 94.4 0.5 1.1E-05 48.5 11.9 60 333-405 191-250 (265)
318 PRK08072 nicotinate-nucleotide 94.3 0.49 1.1E-05 49.0 11.8 64 333-409 201-264 (277)
319 PRK08999 hypothetical protein; 94.3 0.13 2.9E-06 53.2 7.8 69 333-408 239-311 (312)
320 PLN02898 HMP-P kinase/thiamin- 94.3 0.22 4.8E-06 55.4 9.9 77 333-416 403-486 (502)
321 PRK08673 3-deoxy-7-phosphohept 94.3 1 2.2E-05 47.9 14.4 107 289-406 183-298 (335)
322 TIGR01858 tag_bisphos_ald clas 94.3 1 2.2E-05 46.8 14.0 114 291-409 107-234 (282)
323 TIGR01306 GMP_reduct_2 guanosi 94.2 0.38 8.2E-06 50.8 10.9 102 290-405 61-165 (321)
324 PLN02460 indole-3-glycerol-pho 94.2 0.26 5.7E-06 52.2 9.7 76 340-420 251-332 (338)
325 PRK12738 kbaY tagatose-bisphos 94.2 1.4 3E-05 45.9 14.8 148 241-409 74-236 (286)
326 PRK01222 N-(5'-phosphoribosyl) 94.2 2.9 6.2E-05 41.4 16.5 181 194-413 7-191 (210)
327 PRK09250 fructose-bisphosphate 94.2 1.2 2.6E-05 47.5 14.5 159 241-412 125-325 (348)
328 PRK04147 N-acetylneuraminate l 94.1 1.1 2.3E-05 46.4 13.9 130 252-402 22-163 (293)
329 PF01081 Aldolase: KDPG and KH 94.1 0.15 3.3E-06 50.1 7.1 147 243-412 9-183 (196)
330 cd00951 KDGDH 5-dehydro-4-deox 94.1 1.1 2.4E-05 46.3 13.9 130 252-402 19-156 (289)
331 PRK15072 bifunctional D-altron 94.1 0.97 2.1E-05 49.0 14.0 142 249-404 124-286 (404)
332 PRK07428 nicotinate-nucleotide 94.0 0.65 1.4E-05 48.4 12.0 66 334-413 210-279 (288)
333 cd03320 OSBS o-Succinylbenzoat 94.0 1.1 2.3E-05 45.6 13.5 130 243-404 74-205 (263)
334 PRK09517 multifunctional thiam 94.0 0.19 4.2E-06 58.7 9.1 75 339-418 127-207 (755)
335 TIGR01303 IMP_DH_rel_1 IMP deh 94.0 0.15 3.2E-06 56.6 7.8 71 327-405 224-294 (475)
336 cd01568 QPRTase_NadC Quinolina 94.0 0.66 1.4E-05 47.7 12.0 67 334-413 195-263 (269)
337 cd01572 QPRTase Quinolinate ph 93.9 0.5 1.1E-05 48.6 11.0 62 333-407 195-256 (268)
338 PRK13398 3-deoxy-7-phosphohept 93.9 0.52 1.1E-05 48.5 11.0 109 289-408 117-234 (266)
339 PF04131 NanE: Putative N-acet 93.8 0.68 1.5E-05 45.3 10.9 111 259-403 4-117 (192)
340 PRK13396 3-deoxy-7-phosphohept 93.8 1.1 2.4E-05 47.9 13.5 106 289-405 191-306 (352)
341 cd03318 MLE Muconate Lactonizi 93.7 2.1 4.6E-05 45.4 15.6 133 243-404 133-268 (365)
342 PRK07807 inosine 5-monophospha 93.7 0.21 4.5E-06 55.5 8.2 71 327-405 226-296 (479)
343 PRK09427 bifunctional indole-3 93.7 0.39 8.4E-06 53.0 10.2 161 223-420 93-253 (454)
344 PRK05742 nicotinate-nucleotide 93.7 0.79 1.7E-05 47.4 11.8 63 333-408 202-264 (277)
345 PRK01130 N-acetylmannosamine-6 93.6 1.6 3.4E-05 43.0 13.5 131 244-405 9-146 (221)
346 PRK07114 keto-hydroxyglutarate 93.5 2.4 5.1E-05 42.6 14.6 152 243-413 16-196 (222)
347 PRK05835 fructose-bisphosphate 93.5 3.7 8.1E-05 43.2 16.5 98 291-391 109-221 (307)
348 TIGR01302 IMP_dehydrog inosine 93.5 0.23 4.9E-06 54.7 8.0 70 328-405 224-293 (450)
349 TIGR01928 menC_lowGC/arch o-su 93.4 2.4 5.3E-05 44.4 15.3 129 243-404 123-252 (324)
350 PRK13813 orotidine 5'-phosphat 93.4 2.3 5E-05 41.6 14.2 137 246-416 60-203 (215)
351 COG0413 PanB Ketopantoate hydr 93.4 1.7 3.6E-05 44.6 13.1 153 194-381 19-203 (268)
352 cd00953 KDG_aldolase KDG (2-ke 93.2 2.1 4.5E-05 44.1 14.1 129 251-402 17-155 (279)
353 COG2513 PrpB PEP phosphonomuta 93.2 2.7 5.9E-05 43.7 14.7 201 186-408 16-237 (289)
354 cd00947 TBP_aldolase_IIB Tagat 93.2 2.5 5.5E-05 43.7 14.6 149 240-409 68-230 (276)
355 PRK12858 tagatose 1,6-diphosph 93.1 1 2.2E-05 47.9 12.0 142 260-413 112-284 (340)
356 PRK00278 trpC indole-3-glycero 93.1 0.49 1.1E-05 48.3 9.2 92 311-410 49-145 (260)
357 TIGR03247 glucar-dehydr glucar 93.1 1.8 4E-05 47.6 14.2 123 252-403 180-307 (441)
358 PRK00230 orotidine 5'-phosphat 93.1 1.1 2.4E-05 44.9 11.5 140 243-419 57-221 (230)
359 PRK06843 inosine 5-monophospha 93.1 0.36 7.9E-06 52.5 8.6 70 328-405 153-222 (404)
360 PLN02535 glycolate oxidase 93.1 0.85 1.8E-05 49.0 11.3 45 356-405 207-251 (364)
361 PRK06256 biotin synthase; Vali 93.1 1.1 2.4E-05 46.9 12.1 138 260-406 155-301 (336)
362 cd03317 NAAAR N-acylamino acid 93.0 2.9 6.4E-05 44.1 15.2 129 243-404 127-257 (354)
363 KOG4175 Tryptophan synthase al 93.0 2.3 4.9E-05 42.2 13.0 173 251-444 29-263 (268)
364 PF00701 DHDPS: Dihydrodipicol 93.0 1.3 2.9E-05 45.4 12.3 130 252-402 20-160 (289)
365 PLN02979 glycolate oxidase 92.9 0.93 2E-05 48.7 11.3 45 356-405 207-251 (366)
366 PRK02714 O-succinylbenzoate sy 92.9 2.5 5.4E-05 44.4 14.4 123 253-404 119-246 (320)
367 PRK05458 guanosine 5'-monophos 92.9 0.67 1.4E-05 49.1 10.1 101 291-405 65-168 (326)
368 PRK07360 FO synthase subunit 2 92.9 0.94 2E-05 48.6 11.4 151 325-481 92-255 (371)
369 TIGR00167 cbbA ketose-bisphosp 92.7 4.2 9.2E-05 42.4 15.5 119 286-409 107-240 (288)
370 PRK05096 guanosine 5'-monophos 92.7 0.98 2.1E-05 48.0 10.8 97 296-405 81-179 (346)
371 cd00408 DHDPS-like Dihydrodipi 92.7 13 0.00028 37.9 24.2 151 239-420 64-215 (281)
372 cd04737 LOX_like_FMN L-Lactate 92.5 1.5 3.2E-05 47.0 12.2 50 358-412 207-260 (351)
373 cd02922 FCB2_FMN Flavocytochro 92.5 0.78 1.7E-05 48.9 10.1 87 312-405 118-241 (344)
374 PF09370 TIM-br_sig_trns: TIM- 92.5 0.67 1.4E-05 47.6 9.1 145 240-406 80-247 (268)
375 PRK05567 inosine 5'-monophosph 92.5 0.34 7.3E-06 53.8 7.6 70 328-405 228-297 (486)
376 TIGR01305 GMP_reduct_1 guanosi 92.4 1.2 2.5E-05 47.4 11.0 69 329-405 108-178 (343)
377 TIGR03569 NeuB_NnaB N-acetylne 92.4 3.9 8.4E-05 43.4 15.0 83 289-381 116-201 (329)
378 PRK12857 fructose-1,6-bisphosp 92.4 3.1 6.8E-05 43.2 14.0 119 286-409 104-236 (284)
379 KOG0623 Glutamine amidotransfe 92.3 0.28 6.1E-06 51.7 6.2 74 327-404 441-514 (541)
380 PLN02495 oxidoreductase, actin 92.3 0.8 1.7E-05 49.6 9.8 101 300-405 101-214 (385)
381 PRK07084 fructose-bisphosphate 92.2 3.7 8.1E-05 43.4 14.4 103 291-395 120-238 (321)
382 COG0284 PyrF Orotidine-5'-phos 92.2 2.8 6E-05 42.6 13.1 136 243-413 64-222 (240)
383 TIGR00222 panB 3-methyl-2-oxob 92.2 2.2 4.8E-05 43.9 12.4 137 259-420 27-192 (263)
384 PRK07107 inosine 5-monophospha 92.1 0.46 1E-05 53.1 8.0 72 328-406 242-313 (502)
385 cd02810 DHOD_DHPD_FMN Dihydroo 92.0 1.5 3.2E-05 44.9 11.2 90 310-405 97-196 (289)
386 PRK01222 N-(5'-phosphoribosyl) 91.8 4.8 0.0001 39.9 14.1 127 245-405 4-131 (210)
387 TIGR02708 L_lactate_ox L-lacta 91.8 1 2.2E-05 48.4 10.0 52 357-413 213-268 (367)
388 PRK07114 keto-hydroxyglutarate 91.8 1.5 3.3E-05 43.9 10.6 107 313-434 16-128 (222)
389 PF03932 CutC: CutC family; I 91.7 2.7 5.8E-05 41.6 12.1 126 253-402 71-196 (201)
390 cd00003 PNPsynthase Pyridoxine 91.6 3.4 7.5E-05 41.7 12.8 115 285-412 98-218 (234)
391 PLN02363 phosphoribosylanthran 91.6 6.1 0.00013 40.5 14.9 83 244-348 47-130 (256)
392 TIGR01927 menC_gamma/gm+ o-suc 91.6 3.9 8.5E-05 42.7 13.9 127 245-404 104-235 (307)
393 TIGR02313 HpaI-NOT-DapA 2,4-di 91.6 0.59 1.3E-05 48.5 7.7 86 326-412 20-109 (294)
394 TIGR00284 dihydropteroate synt 91.5 2.6 5.6E-05 47.2 13.1 52 254-319 165-216 (499)
395 cd04726 KGPDC_HPS 3-Keto-L-gul 91.5 7.9 0.00017 37.2 15.1 121 250-405 9-133 (202)
396 cd03332 LMO_FMN L-Lactate 2-mo 91.5 2.1 4.5E-05 46.4 11.9 44 357-405 238-281 (383)
397 cd01573 modD_like ModD; Quinol 91.4 1 2.2E-05 46.5 9.2 62 335-407 198-260 (272)
398 PRK07535 methyltetrahydrofolat 91.4 1.2 2.5E-05 45.8 9.4 56 251-319 22-77 (261)
399 PRK02227 hypothetical protein; 91.3 3.6 7.9E-05 41.7 12.6 119 266-405 18-151 (238)
400 TIGR01182 eda Entner-Doudoroff 91.2 1.6 3.5E-05 43.2 10.0 105 312-433 8-116 (204)
401 cd00452 KDPG_aldolase KDPG and 91.2 1.5 3.3E-05 42.3 9.7 91 313-420 5-95 (190)
402 PRK09140 2-dehydro-3-deoxy-6-p 91.2 1.7 3.7E-05 42.9 10.2 92 312-419 10-101 (206)
403 PRK06015 keto-hydroxyglutarate 91.2 1.6 3.5E-05 43.1 9.9 106 313-435 5-114 (201)
404 TIGR03551 F420_cofH 7,8-dideme 91.2 0.89 1.9E-05 48.1 8.7 137 325-468 71-218 (343)
405 TIGR03586 PseI pseudaminic aci 91.1 6.8 0.00015 41.6 15.1 83 289-381 117-200 (327)
406 PRK05265 pyridoxine 5'-phospha 91.0 5 0.00011 40.7 13.3 114 285-412 101-220 (239)
407 PLN02493 probable peroxisomal 91.0 2.2 4.8E-05 45.9 11.5 45 356-405 208-252 (367)
408 cd00951 KDGDH 5-dehydro-4-deox 90.9 0.74 1.6E-05 47.6 7.7 85 326-412 20-108 (289)
409 KOG3111 D-ribulose-5-phosphate 90.9 3.5 7.5E-05 40.7 11.5 149 243-413 6-205 (224)
410 PF01081 Aldolase: KDPG and KH 90.9 1.3 2.8E-05 43.6 8.9 106 313-435 9-118 (196)
411 TIGR00559 pdxJ pyridoxine 5'-p 90.9 4.8 0.0001 40.8 13.0 115 285-412 98-219 (237)
412 PRK03620 5-dehydro-4-deoxygluc 90.6 24 0.00051 36.8 23.7 150 239-420 74-225 (303)
413 PRK05718 keto-hydroxyglutarate 90.5 3.1 6.7E-05 41.4 11.3 91 313-420 16-106 (212)
414 PRK06552 keto-hydroxyglutarate 90.5 2.1 4.6E-05 42.6 10.2 107 313-434 14-125 (213)
415 PLN02389 biotin synthase 90.5 3.3 7.1E-05 44.8 12.3 142 257-406 178-330 (379)
416 PRK12457 2-dehydro-3-deoxyphos 90.5 5.1 0.00011 41.6 13.0 113 269-405 107-237 (281)
417 COG0800 Eda 2-keto-3-deoxy-6-p 90.4 2 4.4E-05 42.8 9.7 77 313-403 14-90 (211)
418 PRK13306 ulaD 3-keto-L-gulonat 90.4 10 0.00023 37.6 15.0 153 231-413 46-199 (216)
419 TIGR00433 bioB biotin syntheta 90.4 6.6 0.00014 40.1 14.1 139 258-405 124-273 (296)
420 COG0329 DapA Dihydrodipicolina 90.4 1 2.2E-05 47.0 8.1 87 326-413 24-114 (299)
421 PF01116 F_bP_aldolase: Fructo 90.2 7.4 0.00016 40.5 14.3 116 291-410 108-240 (287)
422 PF00218 IGPS: Indole-3-glycer 90.2 0.9 1.9E-05 46.5 7.4 77 327-411 68-144 (254)
423 COG2876 AroA 3-deoxy-D-arabino 90.1 2.5 5.4E-05 43.5 10.3 106 289-405 135-249 (286)
424 PRK12330 oxaloacetate decarbox 90.1 37 0.00081 38.2 23.2 132 252-404 94-231 (499)
425 PF01729 QRPTase_C: Quinolinat 90.0 3 6.5E-05 40.1 10.4 95 299-413 66-163 (169)
426 TIGR03128 RuMP_HxlA 3-hexulose 89.9 7.6 0.00016 37.6 13.4 122 248-405 6-133 (206)
427 PLN02417 dihydrodipicolinate s 89.8 1.1 2.4E-05 46.1 7.8 87 325-412 20-110 (280)
428 PRK08508 biotin synthase; Prov 89.7 3.4 7.3E-05 42.6 11.3 141 257-405 102-250 (279)
429 PF01487 DHquinase_I: Type I 3 89.6 2.6 5.6E-05 41.7 10.0 90 246-348 2-96 (224)
430 TIGR00683 nanA N-acetylneurami 89.6 28 0.00061 36.0 23.5 148 239-420 68-219 (290)
431 PRK09196 fructose-1,6-bisphosp 89.5 4.3 9.4E-05 43.4 12.0 60 329-389 175-241 (347)
432 PLN02417 dihydrodipicolinate s 89.5 7.7 0.00017 39.9 13.7 83 252-348 20-104 (280)
433 TIGR01521 FruBisAldo_II_B fruc 89.5 8.4 0.00018 41.3 14.1 60 329-389 173-239 (347)
434 TIGR01362 KDO8P_synth 3-deoxy- 89.4 5.5 0.00012 40.8 12.1 119 260-404 86-220 (258)
435 PRK14567 triosephosphate isome 89.3 1.7 3.8E-05 44.4 8.6 44 374-420 202-245 (253)
436 cd00956 Transaldolase_FSA Tran 89.3 11 0.00025 37.3 14.2 141 241-420 51-194 (211)
437 PF04309 G3P_antiterm: Glycero 89.2 0.44 9.5E-06 46.1 4.0 72 326-410 103-174 (175)
438 PRK07455 keto-hydroxyglutarate 89.1 3.1 6.7E-05 40.4 9.9 80 313-406 13-92 (187)
439 PRK04147 N-acetylneuraminate l 89.1 1.2 2.5E-05 46.1 7.3 87 326-413 23-114 (293)
440 PLN02334 ribulose-phosphate 3- 89.0 15 0.00033 36.4 15.0 136 243-405 9-146 (229)
441 PF01680 SOR_SNZ: SOR/SNZ fami 89.0 0.84 1.8E-05 44.3 5.6 116 260-402 27-142 (208)
442 COG5016 Pyruvate/oxaloacetate 89.0 7.9 0.00017 42.2 13.4 128 253-402 96-228 (472)
443 cd04736 MDH_FMN Mandelate dehy 88.9 4.1 8.8E-05 43.8 11.4 43 358-405 222-264 (361)
444 PRK06559 nicotinate-nucleotide 88.9 4.5 9.7E-05 42.3 11.4 63 332-407 209-271 (290)
445 PF00809 Pterin_bind: Pterin b 88.8 2.6 5.5E-05 41.6 9.3 79 254-346 19-98 (210)
446 PRK08227 autoinducer 2 aldolas 88.8 6 0.00013 40.8 12.1 118 238-394 137-260 (264)
447 PRK08385 nicotinate-nucleotide 88.7 5.4 0.00012 41.4 11.8 88 300-409 170-263 (278)
448 PRK09197 fructose-bisphosphate 88.7 17 0.00037 39.0 15.7 120 286-408 135-282 (350)
449 PF03740 PdxJ: Pyridoxal phosp 88.7 3.2 6.9E-05 42.1 9.8 115 285-412 99-221 (239)
450 cd00405 PRAI Phosphoribosylant 88.7 10 0.00022 36.9 13.2 124 246-404 1-126 (203)
451 cd00952 CHBPH_aldolase Trans-o 88.6 1.3 2.8E-05 46.4 7.4 86 326-412 28-117 (309)
452 TIGR01037 pyrD_sub1_fam dihydr 88.6 9 0.00019 39.5 13.5 104 296-405 75-189 (300)
453 PRK15108 biotin synthase; Prov 88.4 8.8 0.00019 40.9 13.6 143 257-409 136-291 (345)
454 PRK06106 nicotinate-nucleotide 88.2 6.7 0.00014 40.8 12.1 85 300-406 181-267 (281)
455 PRK04452 acetyl-CoA decarbonyl 88.2 4.3 9.3E-05 42.9 10.9 119 260-399 81-201 (319)
456 PRK03170 dihydrodipicolinate s 88.2 34 0.00073 35.2 25.3 149 239-420 68-219 (292)
457 KOG4201 Anthranilate synthase 88.2 1.7 3.7E-05 43.5 7.3 76 330-411 197-272 (289)
458 PRK05198 2-dehydro-3-deoxyphos 88.1 7.5 0.00016 40.0 12.2 111 269-405 101-229 (264)
459 PRK15452 putative protease; Pr 88.1 13 0.00028 41.1 15.0 121 266-408 21-144 (443)
460 TIGR00674 dapA dihydrodipicoli 88.1 34 0.00074 35.1 23.8 148 239-419 65-215 (285)
461 PF00697 PRAI: N-(5'phosphorib 88.1 2.8 6E-05 40.9 8.8 178 195-414 4-185 (197)
462 PLN02389 biotin synthase 87.9 3.3 7.2E-05 44.7 10.1 126 325-459 117-243 (379)
463 PRK02901 O-succinylbenzoate sy 87.9 18 0.00039 38.4 15.3 125 250-405 87-214 (327)
464 cd00950 DHDPS Dihydrodipicolin 87.8 35 0.00075 34.9 23.5 149 239-420 67-218 (284)
465 cd04733 OYE_like_2_FMN Old yel 87.7 5 0.00011 42.4 11.1 99 241-346 216-321 (338)
466 PF01070 FMN_dh: FMN-dependent 87.6 2.6 5.7E-05 45.1 9.1 42 359-405 212-253 (356)
467 PRK08508 biotin synthase; Prov 87.6 2.4 5.3E-05 43.6 8.6 129 325-467 41-175 (279)
468 COG1830 FbaB DhnA-type fructos 87.6 2.2 4.8E-05 43.9 8.0 84 251-359 163-248 (265)
469 cd04722 TIM_phosphate_binding 87.6 2.4 5.1E-05 39.3 7.8 91 327-420 12-110 (200)
470 cd03174 DRE_TIM_metallolyase D 87.6 10 0.00022 37.8 12.9 139 246-407 9-168 (265)
471 cd04725 OMP_decarboxylase_like 87.5 15 0.00032 36.4 13.7 143 242-417 50-212 (216)
472 COG0159 TrpA Tryptophan syntha 87.4 3.3 7.1E-05 42.7 9.2 139 299-440 4-171 (265)
473 PRK05286 dihydroorotate dehydr 87.4 7.2 0.00016 41.4 12.2 149 254-405 69-245 (344)
474 PRK15440 L-rhamnonate dehydrat 87.3 4.1 9E-05 44.2 10.4 118 266-404 170-290 (394)
475 cd00308 enolase_like Enolase-s 87.2 5 0.00011 39.7 10.3 92 300-404 81-174 (229)
476 TIGR01036 pyrD_sub2 dihydrooro 87.2 7.8 0.00017 41.1 12.2 149 253-405 65-244 (335)
477 PRK02412 aroD 3-dehydroquinate 87.2 15 0.00033 37.3 13.9 94 242-347 16-116 (253)
478 PF04476 DUF556: Protein of un 87.2 15 0.00031 37.4 13.3 131 266-416 18-162 (235)
479 TIGR01334 modD putative molybd 87.0 2.9 6.2E-05 43.4 8.6 91 298-407 174-265 (277)
480 PRK14042 pyruvate carboxylase 86.9 13 0.00027 42.8 14.3 78 251-346 151-228 (596)
481 PF02548 Pantoate_transf: Keto 86.8 5.6 0.00012 40.9 10.4 123 241-383 15-140 (261)
482 PRK06543 nicotinate-nucleotide 86.7 7.8 0.00017 40.3 11.6 86 300-407 180-267 (281)
483 COG3010 NanE Putative N-acetyl 86.7 12 0.00025 37.5 12.0 118 252-402 31-151 (229)
484 cd08210 RLP_RrRLP Ribulose bis 86.6 10 0.00022 40.9 12.7 142 240-405 124-284 (364)
485 PRK13399 fructose-1,6-bisphosp 86.6 14 0.00031 39.6 13.7 59 329-388 175-240 (347)
486 cd00423 Pterin_binding Pterin 86.4 3 6.5E-05 42.4 8.3 80 251-344 21-100 (258)
487 cd07944 DRE_TIM_HOA_like 4-hyd 86.4 30 0.00066 35.4 15.7 135 247-405 11-158 (266)
488 PRK15108 biotin synthase; Prov 86.3 4.3 9.4E-05 43.2 9.8 128 326-464 78-206 (345)
489 PF03932 CutC: CutC family; I 86.2 22 0.00048 35.2 14.0 136 246-405 3-147 (201)
490 PRK15063 isocitrate lyase; Pro 86.1 25 0.00055 38.7 15.5 155 242-409 147-350 (428)
491 PRK11197 lldD L-lactate dehydr 86.1 5.4 0.00012 43.2 10.4 45 356-405 229-273 (381)
492 PRK09016 quinolinate phosphori 86.1 8.2 0.00018 40.5 11.4 85 300-406 196-281 (296)
493 cd08208 RLP_Photo Ribulose bis 86.0 24 0.00052 38.8 15.4 193 193-414 169-387 (424)
494 cd00740 MeTr MeTr subgroup of 86.0 6.2 0.00013 40.3 10.4 55 251-318 23-77 (252)
495 PRK06978 nicotinate-nucleotide 85.8 8.9 0.00019 40.2 11.5 68 333-413 218-285 (294)
496 cd00311 TIM Triosephosphate is 85.6 1.2 2.7E-05 45.1 5.0 42 374-418 199-240 (242)
497 PRK11572 copper homeostasis pr 85.6 25 0.00053 36.1 14.2 136 246-405 4-148 (248)
498 TIGR03239 GarL 2-dehydro-3-deo 85.5 10 0.00022 38.6 11.6 79 241-346 11-90 (249)
499 PRK14565 triosephosphate isome 85.4 1.5 3.2E-05 44.5 5.4 58 358-419 170-231 (237)
500 TIGR03151 enACPred_II putative 85.4 6.4 0.00014 41.3 10.3 90 295-404 46-135 (307)
No 1
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=2.9e-132 Score=1034.06 Aligned_cols=480 Identities=54% Similarity=0.916 Sum_probs=413.7
Q ss_pred CCceeeecCCcCCcccccCccc-----cccCCccccCCCHHHHHHHhhcccCCcchHHHHHhcCccCcccchhhhhhhhh
Q 009196 1 MASRLRFSGTHRDVVDVAGSTN-----TLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKE 75 (540)
Q Consensus 1 ~~~~cr~~~~h~~~~~~~~~~~-----~~~~~~~~n~~~~~~~~~l~k~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (540)
|||+|||+++|+|.++...... ......+.|++|+++|.+|||+.|+|+||+++|+.++..+...+.. +..+
T Consensus 128 ~G~~CRFl~aHld~~g~~~~~kek~~d~~~~~~t~N~~s~elq~~LrKre~~fekse~~l~~~~~~~~~~~~~---e~~~ 204 (614)
T KOG2333|consen 128 YGFKCRFLGAHLDIEGNNLIQKEKDPDGQFPPTTKNGVSKELQVDLRKREYDFEKSEEILEIIDSFEEARKMK---EEEE 204 (614)
T ss_pred ccceeehhhcccCccccchhhhhhCcccCCCCccccccCHHHHHHHHHhhcChHHHHHHHHHHhcccccccCC---ccch
Confidence 7999999999999886532111 1244566799999999999999999999999999998665333211 1111
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCccccccccccccccccCCCCCCcccccccccCCcCC
Q 009196 76 QEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTAD 155 (540)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (540)
.++.+..++....++. .... .+. +.++....+.-+. ..|..
T Consensus 205 ~e~ap~ee~~~~~~~~-------------------~g~~--~~~------~~ee~t~~k~~~~----------sv~~~-- 245 (614)
T KOG2333|consen 205 VEKAPSEENQEDQEQS-------------------VGPQ--TEQ------RLEELTEHKMKPT----------SVGLK-- 245 (614)
T ss_pred hhcCcchhcccccccc-------------------cccc--ccc------cccccccccCccc----------eeccc--
Confidence 1111111111000000 0000 000 0000000000000 01111
Q ss_pred CCcccccccCCCCCCCCCCCCcccccCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhh
Q 009196 156 TQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALL 235 (540)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll 235 (540)
+ + |+.++++|.+++.|+|+.|+||||||||||+||||||+.+|||++|+||+++.+|++|..++|+++
T Consensus 246 ------~-----d-e~si~l~p~eKk~lD~r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALl 313 (614)
T KOG2333|consen 246 ------Y-----D-EDSIRLRPQEKKLLDFRDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALL 313 (614)
T ss_pred ------c-----c-chhhccChhcccccccccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhh
Confidence 1 3 566799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccE
Q 009196 236 RRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPI 314 (540)
Q Consensus 236 ~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPV 314 (540)
++|.+|..|||||+|+.|+++++||+++.+.+.+|+||||||||++.|+++|+||+||++|.++.++|++|..++ ++||
T Consensus 314 kRH~sEdiFGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPi 393 (614)
T KOG2333|consen 314 KRHQSEDIFGVQLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPI 393 (614)
T ss_pred hhcCcccceeeEeccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCe
Confidence 999999999999999999999999999988899999999999999999999999999999999999999999988 5699
Q ss_pred EEEecCCCCCChhHHHHHHHHHH-HcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH
Q 009196 315 TIKVRTGYFEGKNRIDSLIADIG-TWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK 393 (540)
Q Consensus 315 tVKiR~G~~e~~~~~~~la~~le-eaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l 393 (540)
|||||+|..+++..+++++..+. +||+++||+|||+|+|||++.|||+||.+|++.+...+||||||||.|++||.+.+
T Consensus 394 TVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~ 473 (614)
T KOG2333|consen 394 TVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERL 473 (614)
T ss_pred EEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHh
Confidence 99999999999999999999998 99999999999999999999999999999999886339999999999999999999
Q ss_pred hcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhCCC
Q 009196 394 SDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPV 473 (540)
Q Consensus 394 ~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ryip~ 473 (540)
..++.+|+||||||||++||||++|+++++||+|+.||++||++|++|+++|||||++||+++||||+|||||+|||||+
T Consensus 474 ~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~RYiPv 553 (614)
T KOG2333|consen 474 NQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHRYIPV 553 (614)
T ss_pred hcCCCcceEEeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHHHHHhhchH
Confidence 87666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCchHhHhhcCCCHHHHHHHHHHHcCCCCCCCccCccCCCccc
Q 009196 474 GLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 534 (540)
Q Consensus 474 glle~~p~~~~~rp~~~~~r~~le~l~~s~~~~d~~ki~e~~l~~~~~~~~f~pkh~~~~~ 534 (540)
||+|++||+||+|||.|.|||+|||||+|.+++||++||||||||+|++|+|+||||||||
T Consensus 554 ~l~e~lpqriN~RPp~y~gRdelETLm~S~ka~DWvkiSe~lLGpvPegFtF~PKHKanay 614 (614)
T KOG2333|consen 554 GLLEVLPQRINDRPPLYTGRDELETLMSSQKAADWVKISEMLLGPVPEGFTFTPKHKANAY 614 (614)
T ss_pred HHhhcCchhhccCCccccchhHHHHHHhcccchhHHHHHHHHcCCCCCCceecccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 2
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-65 Score=530.99 Aligned_cols=313 Identities=35% Similarity=0.531 Sum_probs=282.1
Q ss_pred ccccCcccCCcEEEccCCCCCCHHHHHHHHHhCC-CEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHH
Q 009196 178 REKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTL 256 (540)
Q Consensus 178 ~e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Ga-dl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~ 256 (540)
..++.+.++++++||||+++||+|||++|+++|+ +++||||+++.+++++....+..+...+.+.|+++||+|++|+.+
T Consensus 2 ~~~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l 81 (323)
T COG0042 2 LKIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELL 81 (323)
T ss_pred CccccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHH
Confidence 3567788999999999999999999999999999 999999999999999998888777666778999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHH
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIAD 335 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~ 335 (540)
++||+++. +.|+|+||||||||++++.+.|+||+||++|+++.+||++|++++ ++|||||||+||++.+....++++.
T Consensus 82 ~eaA~~~~-~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~ 160 (323)
T COG0042 82 AEAAKIAE-ELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARI 160 (323)
T ss_pred HHHHHHHH-hcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHH
Confidence 99999998 678999999999999999999999999999999999999999999 4999999999998765568899999
Q ss_pred HHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCch
Q 009196 336 IGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 415 (540)
Q Consensus 336 leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif 415 (540)
++++|+++|||||||+.|+|.++++|++|+++++.++ ++|||+||||.|++|+.++++. +||||||||||++.|||+|
T Consensus 161 ~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~-~ipvi~NGdI~s~~~a~~~l~~-tg~DgVMigRga~~nP~l~ 238 (323)
T COG0042 161 LEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVP-SIPVIANGDIKSLEDAKEMLEY-TGADGVMIGRGALGNPWLF 238 (323)
T ss_pred HHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCC-CCeEEeCCCcCCHHHHHHHHHh-hCCCEEEEcHHHccCCcHH
Confidence 9999999999999999999999999999999999995 3999999999999999999997 9999999999999999999
Q ss_pred HHH---HhcCCCCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhCCCccccccccccCCCCCCCCC
Q 009196 416 TEI---KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSG 492 (540)
Q Consensus 416 ~ei---k~~~~~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ryip~glle~~p~~~~~rp~~~~~ 492 (540)
.++ ..+...+++..|+++++.+|++...+++| ..++..+|+|+. ||.+++|.. ...
T Consensus 239 ~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~----~~~~~~~~a---------------~~~ 297 (323)
T COG0042 239 RQIDYLETGELLPPTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLG----YYLKGLPGA---------------REL 297 (323)
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHH----HHhhcCccH---------------HHH
Confidence 996 22333457899999999999999999998 688999998876 778887743 222
Q ss_pred CchHhHhhcCCCHHHHHHHHHHHcC
Q 009196 493 RDDLETLMASDSAADWIRISEMLLG 517 (540)
Q Consensus 493 r~~le~l~~s~~~~d~~ki~e~~l~ 517 (540)
| ..+....+..+..++++.++.
T Consensus 298 r---~~~~~~~~~~~~~~~l~~~~~ 319 (323)
T COG0042 298 R---RALNKAEDGAEVRRALEAVFE 319 (323)
T ss_pred H---HHHhccCcHHHHHHHHHHHHh
Confidence 4 568888888887777776654
No 3
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=5.1e-63 Score=512.68 Aligned_cols=312 Identities=27% Similarity=0.378 Sum_probs=282.2
Q ss_pred cccCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHH
Q 009196 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLAR 258 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~ 258 (540)
.++.+.++++++||||+++||+|||++|+++|++++||||+++.++......+...+...+.+.|+++||+|++|+.|++
T Consensus 2 ~i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~ 81 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMAD 81 (321)
T ss_pred ccCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHH
Confidence 35778899999999999999999999999999999999999999887666555544444566688999999999999999
Q ss_pred HHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHH
Q 009196 259 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT 338 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~lee 338 (540)
||+++. +.|+|+||||||||++++.+.|+|++|+++|+++.+|++++++++++||+||+|.||+++..++.++++.+++
T Consensus 82 aa~~~~-~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~ 160 (321)
T PRK10415 82 AARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED 160 (321)
T ss_pred HHHHHH-HCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHH
Confidence 999887 6799999999999999999999999999999999999999999999999999999998766688999999999
Q ss_pred cCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHH
Q 009196 339 WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 339 aGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~ei 418 (540)
+|+++|+||+|++.|+|+|+++|++++++++.+ ++|||+||||.|++|+.++++. +|||+||||||++.|||||.++
T Consensus 161 ~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l~~-~gadgVmiGR~~l~nP~if~~~ 237 (321)
T PRK10415 161 CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVLDY-TGADALMIGRAAQGRPWIFREI 237 (321)
T ss_pred hCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHhc-cCCCEEEEChHhhcCChHHHHH
Confidence 999999999999999999999999999999998 7999999999999999999986 8999999999999999999999
Q ss_pred HhcC----C-CCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhCCCccccccccccCCCCCCCCCC
Q 009196 419 KEQR----H-WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGR 493 (540)
Q Consensus 419 k~~~----~-~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ryip~glle~~p~~~~~rp~~~~~r 493 (540)
++.. . .+++..|+++++.+|++...+++|+ .+++..+|||+. ||.+++|.+ ...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~----~y~~~~~~~---------------~~~r 297 (321)
T PRK10415 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP-AKGYRIARKHVS----WYLQEHAPN---------------DQFR 297 (321)
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHH----HHHhcCCch---------------HHHH
Confidence 8642 2 2467889999999999999999986 689999999987 888888876 2335
Q ss_pred chHhHhhcCCCHHHHHHHHHHHcC
Q 009196 494 DDLETLMASDSAADWIRISEMLLG 517 (540)
Q Consensus 494 ~~le~l~~s~~~~d~~ki~e~~l~ 517 (540)
..|++..+.+|+.++++.++.
T Consensus 298 ---~~~~~~~~~~~~~~~~~~~~~ 318 (321)
T PRK10415 298 ---RTFNAIEDASEQLEALEAYFE 318 (321)
T ss_pred ---HHHHcCCCHHHHHHHHHHHHH
Confidence 779999999999999988864
No 4
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=1.5e-62 Score=506.97 Aligned_cols=299 Identities=23% Similarity=0.317 Sum_probs=264.0
Q ss_pred cEEEccCCCCCCHHHHHHHHHhC-CCEEEeccceechhccCChhhhh---hhh---cccCCCeEEEEecCCcHHHHHHHH
Q 009196 188 KLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWA---LLR---RHSSEDLFGVQICGAYPDTLARTV 260 (540)
Q Consensus 188 rliLAPM~~vtdlpfR~l~~~~G-adl~~TEmi~a~~l~~g~~~e~~---ll~---~~~~e~p~~vQL~G~~p~~~a~AA 260 (540)
+++||||+++||.|||++|+++| ++++||||+++..+......... .+. .++.+.|+++||+|++|+.|++||
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 68999999999999999999998 89999999999988876544322 222 567789999999999999999999
Q ss_pred HHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHHHHHHHHHHH
Q 009196 261 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGT 338 (540)
Q Consensus 261 ~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~~~la~~lee 338 (540)
+++. ++|+|+||||||||.+++.+.|+|++|+++|+++.+|+++|++++ ++|||||+|+||++. +++.++++.+++
T Consensus 82 ~~~~-~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~-~~~~~~a~~l~~ 159 (312)
T PRK10550 82 ARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSG-ERKFEIADAVQQ 159 (312)
T ss_pred HHHH-HcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCc-hHHHHHHHHHHh
Confidence 9997 689999999999999999999999999999999999999999988 499999999999654 347899999999
Q ss_pred cCCcEEEEecccccCccCCCc-CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHH
Q 009196 339 WGASAVTVHGRTRQQRYSKLA-DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417 (540)
Q Consensus 339 aGvdaItVHgRtr~q~y~g~a-dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~e 417 (540)
+|+++|+||+||+.|+|++++ +|++++++++.+ +||||+||||+|++|+.++++. +|||+||||||+|.|||||++
T Consensus 160 ~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi~nGdI~t~~da~~~l~~-~g~DgVmiGRg~l~nP~lf~~ 236 (312)
T PRK10550 160 AGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVIANGEIWDWQSAQQCMAI-TGCDAVMIGRGALNIPNLSRV 236 (312)
T ss_pred cCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEEEeCCcCCHHHHHHHHhc-cCCCEEEEcHHhHhCcHHHHH
Confidence 999999999999999999975 999999999998 7999999999999999999986 999999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhCCCccccccccccCCCCCCCCCCchHh
Q 009196 418 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLE 497 (540)
Q Consensus 418 ik~~~~~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ryip~glle~~p~~~~~rp~~~~~r~~le 497 (540)
++.+. ..++..|+++++++|+.+..++.+. ..++..+|+|+. ||.+++|.+ ...| .
T Consensus 237 ~~~g~-~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~----~y~~~~~~~---------------~~~r---~ 292 (312)
T PRK10550 237 VKYNE-PRMPWPEVVALLQKYTRLEKQGDTG-LYHVARIKQWLG----YLRKEYDEA---------------TELF---Q 292 (312)
T ss_pred hhcCC-CCCCHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHH----HHHhcCCcH---------------HHHH---H
Confidence 98765 3568899999999999865655443 467888888775 888888876 3345 7
Q ss_pred HhhcCCCHHHHHHHHHHH
Q 009196 498 TLMASDSAADWIRISEML 515 (540)
Q Consensus 498 ~l~~s~~~~d~~ki~e~~ 515 (540)
.|+++.+.++..++++.+
T Consensus 293 ~i~~~~~~~e~~~~~~~~ 310 (312)
T PRK10550 293 EIRALNNSPDIARAIQAI 310 (312)
T ss_pred HHHcCCCHHHHHHHHHhh
Confidence 899999999998887754
No 5
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=2.7e-63 Score=512.32 Aligned_cols=300 Identities=33% Similarity=0.527 Sum_probs=236.8
Q ss_pred EEccCCCCCCHHHHHHHHHhCCC-EEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCC
Q 009196 190 YLAPLTTVGNLPFRRVCKVLGAD-VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT 268 (540)
Q Consensus 190 iLAPM~~vtdlpfR~l~~~~Gad-l~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG 268 (540)
+||||+++||+|||++|+++|++ ++||||+++..+++.....+.++..++.+.|+++||+|++|+.+++||+++. ..|
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~-~~~ 79 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVA-ELG 79 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHC-CTT
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhh-ccC
Confidence 69999999999999999999998 9999999999999999888888888999999999999999999999999998 579
Q ss_pred CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEec
Q 009196 269 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHG 348 (540)
Q Consensus 269 ~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHg 348 (540)
+|+||||||||.+.+.+.|+|++||++|+++.+||+++++++++|||||+|+||+++.+++.++++.++++|+++||||+
T Consensus 80 ~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~ 159 (309)
T PF01207_consen 80 FDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHG 159 (309)
T ss_dssp -SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEEC
T ss_pred CcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred ccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchH---HHHhcCC-C
Q 009196 349 RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT---EIKEQRH-W 424 (540)
Q Consensus 349 Rtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~---eik~~~~-~ 424 (540)
||+.|+|+++++|++|+++++.+ +||||+||||+|++|+.++++. +||||||||||+|.|||+|. .+..+.. .
T Consensus 160 Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~~~~~~~-tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~ 236 (309)
T PF01207_consen 160 RTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDAERMLEQ-TGADGVMIGRGALGNPWLFREIDQIKEGEPEP 236 (309)
T ss_dssp S-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHHHHHCCC-H-SSEEEESHHHCC-CCHHCHHHCHHHHTT--
T ss_pred CchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHHHHHHHh-cCCcEEEEchhhhhcCHHhhhhhhhccCCCCC
Confidence 99999999999999999999999 6999999999999999999986 89999999999999999999 4444433 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhCCCccccccccccCCCCCCCCCCchHhHhhcCCC
Q 009196 425 DITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDS 504 (540)
Q Consensus 425 ~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ryip~glle~~p~~~~~rp~~~~~r~~le~l~~s~~ 504 (540)
.++..++++++.+|+++..+++|. ..++..+|+|+. +|++.+|.. ...| ..|..+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~----~y~~~~~~~---------------~~~r---~~l~~~~~ 293 (309)
T PF01207_consen 237 FPPIAERLDIILRHYDYMEEFYGE-EKALRQMRKHLK----WYFKGFPGA---------------RKFR---RELNKCKT 293 (309)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHC-CHHHHHHHTTCC----CCTTTSTTH---------------HHHH---HHHCCH-S
T ss_pred CCchhHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHH----HHHccCCcH---------------HHHH---HHHHhhCC
Confidence 334689999999999999999997 568888888765 666666654 2234 77888888
Q ss_pred HHHHHHHHH-HHc
Q 009196 505 AADWIRISE-MLL 516 (540)
Q Consensus 505 ~~d~~ki~e-~~l 516 (540)
.++..++++ .|+
T Consensus 294 ~~e~~~~l~~~~~ 306 (309)
T PF01207_consen 294 LEEFLELLEEAFL 306 (309)
T ss_dssp HHHHHHHH-----
T ss_pred HHHHhhhhccccc
Confidence 888888887 554
No 6
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=2e-61 Score=499.82 Aligned_cols=302 Identities=22% Similarity=0.313 Sum_probs=260.8
Q ss_pred CcEEEccCCCCCCHHHHHHHHHhCC-CEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHH
Q 009196 187 EKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQ 265 (540)
Q Consensus 187 nrliLAPM~~vtdlpfR~l~~~~Ga-dl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~ 265 (540)
++++||||+++||+|||++|+++|+ +++||||+++..++++..+ .++..++.+.|+++||+|++|+.|++||+++.
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~- 77 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAE- 77 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHH-
Confidence 5899999999999999999999998 9999999999999988766 47788899999999999999999999999997
Q ss_pred hCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCCh--hHHHHHHHHHHHcCCcE
Q 009196 266 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGK--NRIDSLIADIGTWGASA 343 (540)
Q Consensus 266 ~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~--~~~~~la~~leeaGvda 343 (540)
++|||+||||||||.++++++|+|++||++|+++.+||+++++++++|||||+|+||++.. ..+.++++.++++|+++
T Consensus 78 ~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~ 157 (318)
T TIGR00742 78 KRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQN 157 (318)
T ss_pred hCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCE
Confidence 6799999999999999999999999999999999999999999999999999999997643 57889999999999999
Q ss_pred EEEecccc-cCccCCC-------cCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCch
Q 009196 344 VTVHGRTR-QQRYSKL-------ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 415 (540)
Q Consensus 344 ItVHgRtr-~q~y~g~-------adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif 415 (540)
|+|||||+ .|+|++. ++|++|+++++.++ +||||+||||+|++|+.+++. |||+||||||+|.|||||
T Consensus 158 itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~NGdI~s~~da~~~l~---g~dgVMigRgal~nP~if 233 (318)
T TIGR00742 158 FIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEINGGIKNSEQIKQHLS---HVDGVMVGREAYENPYLL 233 (318)
T ss_pred EEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEEECCcCCHHHHHHHHh---CCCEEEECHHHHhCCHHH
Confidence 99999997 6777654 48999999999886 699999999999999999883 799999999999999999
Q ss_pred HHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhCCCccccccccccCCCCCCCC
Q 009196 416 TEIKEQRH----WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYS 491 (540)
Q Consensus 416 ~eik~~~~----~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ryip~glle~~p~~~~~rp~~~~ 491 (540)
.++++... ..++..|+++.+++|++...++ ..++..+|||+. ||.+++|.+ ..
T Consensus 234 ~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~----~y~~g~~~~---------------~~ 290 (318)
T TIGR00742 234 ANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLL----GLFQGKPGA---------------KQ 290 (318)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHH----HHHccCCCH---------------HH
Confidence 99986421 2457788999999998876554 368999999987 777888876 34
Q ss_pred CCchHhHhhcCCCHHHHHHHHHHHcCCCC
Q 009196 492 GRDDLETLMASDSAADWIRISEMLLGKVP 520 (540)
Q Consensus 492 ~r~~le~l~~s~~~~d~~ki~e~~l~~~~ 520 (540)
.|+.+.+...... .-..++|+.+...|
T Consensus 291 ~r~~~~~~~~~~~--~~~~~~~~~~~~~~ 317 (318)
T TIGR00742 291 WRRYLSENAPKAG--AGIEVLETALETVP 317 (318)
T ss_pred HHHHHHhcccCCC--CcHHHHHHHHHhcc
Confidence 4655555444432 44466666665444
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=6.7e-59 Score=481.07 Aligned_cols=312 Identities=31% Similarity=0.480 Sum_probs=282.2
Q ss_pred ccCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHH
Q 009196 180 KKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLART 259 (540)
Q Consensus 180 ~~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~A 259 (540)
++++.++++++||||+++||+|||++|+++|++++||||+++..+.+.......++..++.+.|+++||+|++|+.|++|
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~a 80 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEA 80 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHH
Confidence 36788999999999999999999999999999999999999999988887777778888899999999999999999999
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
|+++. ++|||+||||||||...+.+.++|++|+++|+++.+|+++|++++++||+||+|+||+++..+..++++.++++
T Consensus 81 a~~~~-~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~ 159 (319)
T TIGR00737 81 AKINE-ELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA 159 (319)
T ss_pred HHHHH-hCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh
Confidence 99997 78999999999999887888888889999999999999999999999999999999977656788999999999
Q ss_pred CCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 340 GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 340 GvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
|+++|+||+|++.++|+++++|++++++++.+ ++|||+||||.|++|+.++++. +|||+||||||+|.|||||++++
T Consensus 160 G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~da~~~l~~-~gad~VmigR~~l~~P~l~~~~~ 236 (319)
T TIGR00737 160 GAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNGDIFSPEDAKAMLET-TGCDGVMIGRGALGNPWLFRQIE 236 (319)
T ss_pred CCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHh-hCCCEEEEChhhhhCChHHHHHH
Confidence 99999999999999999999999999999998 6999999999999999999976 89999999999999999999997
Q ss_pred hcC----C-CCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhCCCccccccccccCCCCCCCCCCc
Q 009196 420 EQR----H-WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRD 494 (540)
Q Consensus 420 ~~~----~-~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ryip~glle~~p~~~~~rp~~~~~r~ 494 (540)
+.. . .+++..|+++++++|++...++||+ ..++..+|+|+. +|.+++|.. ...|
T Consensus 237 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~----~~~~~~~~~---------------~~~r- 295 (319)
T TIGR00737 237 QYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGE-SKGLRIARKHIA----WYLKGFPGN---------------AALR- 295 (319)
T ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHH----HHHhcCCcH---------------HHHH-
Confidence 632 2 2467889999999999999999986 688999999886 555666654 2224
Q ss_pred hHhHhhcCCCHHHHHHHHHHHcCC
Q 009196 495 DLETLMASDSAADWIRISEMLLGK 518 (540)
Q Consensus 495 ~le~l~~s~~~~d~~ki~e~~l~~ 518 (540)
..|+++.+.+++.++++.++.+
T Consensus 296 --~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T TIGR00737 296 --QTLNHASSFQEVKQLLDDFFET 317 (319)
T ss_pred --HHHHcCCCHHHHHHHHHHHHhh
Confidence 7899999999999999988753
No 8
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=4e-57 Score=470.81 Aligned_cols=310 Identities=23% Similarity=0.327 Sum_probs=256.3
Q ss_pred ccCcccCCcEEEccCCCCCCHHHHHHHHHhCC-CEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHH
Q 009196 180 KKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLAR 258 (540)
Q Consensus 180 ~~~l~lknrliLAPM~~vtdlpfR~l~~~~Ga-dl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~ 258 (540)
|-....+++++||||+++||+|||++|+++|+ +++||||+++..++++. .+.++..++.+.|+++||+|++|+.|++
T Consensus 4 ~~~~~~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~ 81 (333)
T PRK11815 4 KMSKLPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAE 81 (333)
T ss_pred ccccCCCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHH
Confidence 33455678999999999999999999999997 99999999999999876 5667888899999999999999999999
Q ss_pred HHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCC--hhHHHHHHHHH
Q 009196 259 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG--KNRIDSLIADI 336 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~--~~~~~~la~~l 336 (540)
||+++. ++|||+||||||||.++++++|||++|+++|+++.+|++++++++++||+||+|+|+++. ..++.++++.+
T Consensus 82 aA~~~~-~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l 160 (333)
T PRK11815 82 AAKLAE-DWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTV 160 (333)
T ss_pred HHHHHH-hcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHH
Confidence 999997 689999999999999999999999999999999999999999999999999999999764 24678999999
Q ss_pred HHcCCcEEEEecccc-cCccC-------CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 337 GTWGASAVTVHGRTR-QQRYS-------KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 337 eeaGvdaItVHgRtr-~q~y~-------g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
+++|+++|+||+|++ .++|+ ++++|++++++++.++ ++|||+||||.|++|+.++++ +||+||||||+
T Consensus 161 ~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~iPVI~nGgI~s~eda~~~l~---~aDgVmIGRa~ 236 (333)
T PRK11815 161 AEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-HLTIEINGGIKTLEEAKEHLQ---HVDGVMIGRAA 236 (333)
T ss_pred HHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-CCeEEEECCcCCHHHHHHHHh---cCCEEEEcHHH
Confidence 999999999999986 55665 4589999999999865 699999999999999999885 49999999999
Q ss_pred HhCCCchHHHHhcCCC----CCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhCCCccccccccccC
Q 009196 409 LIKPWIFTEIKEQRHW----DITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLN 484 (540)
Q Consensus 409 L~nPwif~eik~~~~~----~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ryip~glle~~p~~~~ 484 (540)
|.|||+|+++++.... .++..|+++.+.+|++...++ | .++..+|||+. +|.+++|..
T Consensus 237 l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~rk~~~----~y~~~~~~~---------- 298 (333)
T PRK11815 237 YHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-G---GRLNHITRHML----GLFQGLPGA---------- 298 (333)
T ss_pred HhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-C---chHHHHHHHHH----HHHcCCCCH----------
Confidence 9999999999875433 235556666666655544442 3 26888999886 777887765
Q ss_pred CCCCCCCCCchHhHhhcCCCHHHHHHHHHHHcCCCCC
Q 009196 485 WRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPD 521 (540)
Q Consensus 485 ~rp~~~~~r~~le~l~~s~~~~d~~ki~e~~l~~~~~ 521 (540)
...|..+.++....+... .++++.++-.|+
T Consensus 299 -----~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~ 328 (333)
T PRK11815 299 -----RAWRRYLSENAHKPGAGI--EVLEEALALVEE 328 (333)
T ss_pred -----HHHHHHHHhhcccCCCCH--HHHHHHHHhhhh
Confidence 334644444444333323 555555554444
No 9
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-53 Score=435.81 Aligned_cols=257 Identities=26% Similarity=0.428 Sum_probs=228.9
Q ss_pred EEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCC
Q 009196 190 YLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTV 269 (540)
Q Consensus 190 iLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~ 269 (540)
++|||+++|.+|||+||+.||++++||||+.++.+++........+...+.++|++||++|++|+.|.+||+++.. ++
T Consensus 22 i~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~-y~- 99 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQP-YC- 99 (358)
T ss_pred ccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhh-hc-
Confidence 8999999999999999999999999999999999998766555556777889999999999999999999999984 33
Q ss_pred CEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecc
Q 009196 270 DFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR 349 (540)
Q Consensus 270 D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgR 349 (540)
|+||||||||+..+.++|||+.||.+|+++.+||++++..++.|||+|||++. +.+++.++++.++++|++.+|||||
T Consensus 100 D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~--d~~kTvd~ak~~e~aG~~~ltVHGR 177 (358)
T KOG2335|consen 100 DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV--DLEKTVDYAKMLEDAGVSLLTVHGR 177 (358)
T ss_pred CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecC--cHHHHHHHHHHHHhCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999985 5678999999999999999999999
Q ss_pred cccCcc--CCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCC
Q 009196 350 TRQQRY--SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDIT 427 (540)
Q Consensus 350 tr~q~y--~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s 427 (540)
|+.|+- ++++||++|+.|++.++ +||||+||+|.+++|+..++.. +||||||+|||+|.|||+|.. .+ ..++
T Consensus 178 tr~~kg~~~~pad~~~i~~v~~~~~-~ipviaNGnI~~~~d~~~~~~~-tG~dGVM~arglL~NPa~F~~--~~--~~~~ 251 (358)
T KOG2335|consen 178 TREQKGLKTGPADWEAIKAVRENVP-DIPVIANGNILSLEDVERCLKY-TGADGVMSARGLLYNPALFLT--AG--YGPT 251 (358)
T ss_pred cHHhcCCCCCCcCHHHHHHHHHhCc-CCcEEeeCCcCcHHHHHHHHHH-hCCceEEecchhhcCchhhcc--CC--CCCC
Confidence 999885 89999999999999996 4999999999999999999986 999999999999999999965 11 1122
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHH
Q 009196 428 SGERLNIMKDFARFGLEHWGSDKKGVETTRHFLL 461 (540)
Q Consensus 428 ~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~ 461 (540)
+ .+++.+|+.+..++.|.. -...+|.||.
T Consensus 252 ~---~~~~~~~l~~~~e~~g~~--~~~~~~~Hl~ 280 (358)
T KOG2335|consen 252 P---WGCVEEYLDIAREFGGLS--SFSLIRHHLF 280 (358)
T ss_pred H---HHHHHHHHHHHHHcCCCc--hhhHHHHHHH
Confidence 2 368899999999998864 2344555543
No 10
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=8.9e-49 Score=385.12 Aligned_cols=229 Identities=41% Similarity=0.675 Sum_probs=216.3
Q ss_pred cEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhC
Q 009196 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQC 267 (540)
Q Consensus 188 rliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~a 267 (540)
+++||||+++|++|||++|+++|++++||||+.+..+++.....+.++..++.+.|+++||+|+++++|+++|+++. ++
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~-~a 79 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVE-EL 79 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHH-hc
Confidence 57999999999999999999999999999999999999998888777888888999999999999999999999998 78
Q ss_pred CCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEe
Q 009196 268 TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 347 (540)
Q Consensus 268 G~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVH 347 (540)
|||+||||+|||..++++++||++|+++++++.++++++++++++||+||+|.||+.. .++.++++.++++|+++|+||
T Consensus 80 G~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~-~~~~~~~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 80 GADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE-EETLELAKALEDAGASALTVH 158 (231)
T ss_pred CCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc-hHHHHHHHHHHHhCCCEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999653 478899999999999999999
Q ss_pred cccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhc
Q 009196 348 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421 (540)
Q Consensus 348 gRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~ 421 (540)
+|++.+++.++++|++++++++.+ ++||++||||.|++|+.++++. +|||+||+||+++.|||+|+++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~~~~l~~-~gad~V~igr~~l~~P~~~~~~~~~ 229 (231)
T cd02801 159 GRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDALRCLEQ-TGVDGVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred CCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHh-cCCCEEEEcHHhHhCCHHHHhhhhc
Confidence 999888888889999999999987 7999999999999999999986 7999999999999999999999764
No 11
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=2.6e-41 Score=336.13 Aligned_cols=215 Identities=21% Similarity=0.279 Sum_probs=180.3
Q ss_pred cEEEccCCCCCCHHHHH-HHHHhCCCEE------EeccceechhccCChhhh------h-----hhhcccCCCeEEEEec
Q 009196 188 KLYLAPLTTVGNLPFRR-VCKVLGADVT------CGEMAMCTNLLQGQASEW------A-----LLRRHSSEDLFGVQIC 249 (540)
Q Consensus 188 rliLAPM~~vtdlpfR~-l~~~~Gadl~------~TEmi~a~~l~~g~~~e~------~-----ll~~~~~e~p~~vQL~ 249 (540)
+++||||+++||.+||+ +|..+|++++ .++|..+..+.+.++.++ . +-.....+.|+++||+
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~ 80 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVR 80 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEec
Confidence 58999999999999999 7877777655 556666666655554431 0 1112234569999999
Q ss_pred CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHH
Q 009196 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 250 G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~ 329 (540)
|++++.+.++|+.+. + ++|+||||||||++.+++.|+|++||++|+++.+|++++++ +++||+||+|+||+ .+.
T Consensus 81 g~~~~~~~~aa~~~~-~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~---~~~ 154 (233)
T cd02911 81 SSSLEPLLNAAALVA-K-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD---VDD 154 (233)
T ss_pred CCCHHHHHHHHHHHh-h-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC---cCH
Confidence 999999999999997 4 46999999999999999999999999999999999999998 59999999999986 457
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
.++++.++++|+|+|+++.+ .++ ..++|+.|++++ + ++|||+||||+|++|+.+++. +|||+|||||+
T Consensus 155 ~~la~~l~~aG~d~ihv~~~--~~g--~~ad~~~I~~i~--~--~ipVIgnGgI~s~eda~~~l~--~GaD~VmiGR~-- 222 (233)
T cd02911 155 EELARLIEKAGADIIHVDAM--DPG--NHADLKKIRDIS--T--ELFIIGNNSVTTIESAKEMFS--YGADMVSVARA-- 222 (233)
T ss_pred HHHHHHHHHhCCCEEEECcC--CCC--CCCcHHHHHHhc--C--CCEEEEECCcCCHHHHHHHHH--cCCCEEEEcCC--
Confidence 89999999999998766433 222 368999999997 5 799999999999999999997 68999999999
Q ss_pred hCCCchHHHHh
Q 009196 410 IKPWIFTEIKE 420 (540)
Q Consensus 410 ~nPwif~eik~ 420 (540)
.+||+|+++++
T Consensus 223 ~~p~~~~~~~~ 233 (233)
T cd02911 223 SLPENIEWLVE 233 (233)
T ss_pred CCchHHHHhhC
Confidence 99999999863
No 12
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=2.5e-36 Score=309.64 Aligned_cols=230 Identities=20% Similarity=0.292 Sum_probs=191.7
Q ss_pred ccccCcccCCcEEEcc-CCCCCCHHHHHHHHHhCCCEEEe---------------------ccceechhccCChhhh-hh
Q 009196 178 REKKLIDFREKLYLAP-LTTVGNLPFRRVCKVLGADVTCG---------------------EMAMCTNLLQGQASEW-AL 234 (540)
Q Consensus 178 ~e~~~l~lknrliLAP-M~~vtdlpfR~l~~~~Gadl~~T---------------------Emi~a~~l~~g~~~e~-~l 234 (540)
.++++++|+||+++|| |.+.++.++|.+++. |+++++| +|+++..+.......| ..
T Consensus 3 ~~~~g~~l~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~ 81 (300)
T TIGR01037 3 VELFGIRFKNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEE 81 (300)
T ss_pred EEECCEECCCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHH
Confidence 3567899999999999 578899999998875 9999999 5555555444333332 22
Q ss_pred hh--cccCCCeEEEEecCCcHHHHHHHHHHHHHhC--CCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc
Q 009196 235 LR--RHSSEDLFGVQICGAYPDTLARTVELIDQQC--TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310 (540)
Q Consensus 235 l~--~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~a--G~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v 310 (540)
+. .+..+.|+++||+|+++++|.++|+.++ ++ ++|+||||||||+.+ |+|+.++.+++++.+|++++++.+
T Consensus 82 ~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~-~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 82 LKPVREEFPTPLIASVYGSSVEEFAEVAEKLE-KAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKT 156 (300)
T ss_pred HHHHhccCCCcEEEEeecCCHHHHHHHHHHHH-hccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhc
Confidence 32 2334569999999999999999999997 44 499999999999964 689999999999999999999999
Q ss_pred cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc----------------cCccCCCcCH----HHHHHHHHH
Q 009196 311 DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR----------------QQRYSKLADW----DYIYQCARK 370 (540)
Q Consensus 311 ~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr----------------~q~y~g~adw----~~I~~i~~~ 370 (540)
++||+||+|.++ ++..++++.++++|+|+|+||+++. .++|++++.| +++.++++.
T Consensus 157 ~~pv~vKi~~~~----~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~ 232 (300)
T TIGR01037 157 DVPVFAKLSPNV----TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM 232 (300)
T ss_pred CCCEEEECCCCh----hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhc
Confidence 999999999643 4578999999999999999996432 2356777665 788999998
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhc
Q 009196 371 ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421 (540)
Q Consensus 371 ~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~ 421 (540)
+ ++|||+||||.|++|+.+++. .|||+|||||+++.+||+|.+++++
T Consensus 233 ~--~ipvi~~GGI~s~~da~~~l~--~GAd~V~igr~~l~~p~~~~~i~~~ 279 (300)
T TIGR01037 233 V--DIPIIGVGGITSFEDALEFLM--AGASAVQVGTAVYYRGFAFKKIIEG 279 (300)
T ss_pred C--CCCEEEECCCCCHHHHHHHHH--cCCCceeecHHHhcCchHHHHHHHH
Confidence 8 699999999999999999997 6899999999999999999999763
No 13
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=3.8e-35 Score=307.07 Aligned_cols=245 Identities=13% Similarity=0.087 Sum_probs=202.6
Q ss_pred CCcccccCcccCCcEEEccCCC-------CCCHHHHHHHHH--hCCCEEEeccceechhccCCh-----------hhhhh
Q 009196 175 THSREKKLIDFREKLYLAPLTT-------VGNLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-----------SEWAL 234 (540)
Q Consensus 175 ~~p~e~~~l~lknrliLAPM~~-------vtdlpfR~l~~~--~Gadl~~TEmi~a~~l~~g~~-----------~e~~l 234 (540)
|.|.++++++++||+++|||++ .++...+++.++ .|+++++||.+.+.+...+.. ..|+.
T Consensus 2 f~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~ 81 (343)
T cd04734 2 LSPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRR 81 (343)
T ss_pred CCCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHH
Confidence 7899999999999999999963 244555555543 589999999999886543321 12322
Q ss_pred h--hcccCCCeEEEEecCCc--------------------------------------HHHHHHHHHHHHHhCCCCEEEe
Q 009196 235 L--RRHSSEDLFGVQICGAY--------------------------------------PDTLARTVELIDQQCTVDFIDI 274 (540)
Q Consensus 235 l--~~~~~e~p~~vQL~G~~--------------------------------------p~~~a~AA~~~~~~aG~D~IDI 274 (540)
+ ..|..+.++++||++.. .++|++||+++. ++|||+|||
T Consensus 82 l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~-~aGfDgVei 160 (343)
T cd04734 82 LAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQ-AGGLDGVEL 160 (343)
T ss_pred HHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEE
Confidence 2 46788899999998420 267999999998 799999999
Q ss_pred cC--C-------CCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCC------hhHHHHHHHHHHHc
Q 009196 275 NM--G-------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG------KNRIDSLIADIGTW 339 (540)
Q Consensus 275 N~--G-------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~------~~~~~~la~~leea 339 (540)
|+ | ||..+.++++||++|++|.+++.+||++|+++++.+++||+|+++.+. .+++.++++.|+++
T Consensus 161 h~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~ 240 (343)
T cd04734 161 QAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAE 240 (343)
T ss_pred ccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhc
Confidence 99 5 788899999999999999999999999999999999999999998652 46789999999999
Q ss_pred C-CcEEEEecccccC----------ccC-CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 340 G-ASAVTVHGRTRQQ----------RYS-KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 340 G-vdaItVHgRtr~q----------~y~-g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
| +|+|+||+++..+ .+. ...+|++++.+++.+ ++|||+||+|.+++++.+++++ ++||+||+||+
T Consensus 241 G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~-~~~D~V~~gR~ 317 (343)
T cd04734 241 GLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAA-GHADMVGMTRA 317 (343)
T ss_pred CCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHc-CCCCeeeecHH
Confidence 8 8999997654221 122 224689999999998 7999999999999999999987 88999999999
Q ss_pred HHhCCCchHHHHhcCC
Q 009196 408 ALIKPWIFTEIKEQRH 423 (540)
Q Consensus 408 aL~nPwif~eik~~~~ 423 (540)
+|.||||++++++++.
T Consensus 318 ~ladP~l~~k~~~g~~ 333 (343)
T cd04734 318 HIADPHLVAKAREGRE 333 (343)
T ss_pred hHhCccHHHHHHcCCc
Confidence 9999999999999874
No 14
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-35 Score=303.11 Aligned_cols=254 Identities=31% Similarity=0.474 Sum_probs=218.2
Q ss_pred cCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhh---------------hhhcccCC-CeE
Q 009196 181 KLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA---------------LLRRHSSE-DLF 244 (540)
Q Consensus 181 ~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~---------------ll~~~~~e-~p~ 244 (540)
..+.++|+++||||+++|++|.|.|+-+||||++|||-+....|+++-+.+.. .++.++.+ ..+
T Consensus 5 ~~l~y~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rl 84 (477)
T KOG2334|consen 5 SSLFYRNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRL 84 (477)
T ss_pred hhhhhcCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeE
Confidence 45778999999999999999999999999999999999999888877654321 12334443 467
Q ss_pred EEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCC
Q 009196 245 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE 324 (540)
Q Consensus 245 ~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e 324 (540)
++|+..++++-..++|+++.+ .+.+||+|||||-.+....|+|++|+.+|+.+..|+.++.+...+|+|+|||+- +
T Consensus 85 ilQ~gT~sa~lA~e~A~lv~n--DvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L--~ 160 (477)
T KOG2334|consen 85 ILQIGTASAELALEAAKLVDN--DVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLL--D 160 (477)
T ss_pred EEEecCCcHHHHHHHHHHhhc--ccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEec--C
Confidence 899999999999999999874 688999999999999999999999999999999999999999999999999963 4
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCC---HHHHHHHHhcCCCcCe
Q 009196 325 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS---YLDWNKHKSDCPELAS 401 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s---~eDa~~~l~~~~gaDg 401 (540)
+.++.+++++++...|+.+|+||+||+..+...++.-+++++++..++ .||||.||++.+ +.|+....+. +++|+
T Consensus 161 s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~-~V~vi~ng~~~~~e~y~Di~~~~~~-~~~~~ 238 (477)
T KOG2334|consen 161 SKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQ-MVPVIVNGGSMDIEQYSDIEDFQEK-TGADS 238 (477)
T ss_pred CcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhc-cceEeeccchhhHHhhhhHHHHHHH-hccch
Confidence 667889999999999999999999999999999999999999999996 599999999999 7788777766 89999
Q ss_pred eeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHH---HhcC
Q 009196 402 CMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLE---HWGS 448 (540)
Q Consensus 402 VMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le---~~g~ 448 (540)
|||+|.+..||.+|.+ ++ -.+.. +.++.|+.++.+ |+|.
T Consensus 239 vmiAR~A~~n~SiF~~--eG---~~~~~---~~~~~fl~~a~~~dn~~~n 280 (477)
T KOG2334|consen 239 VMIARAAESNPSIFRE--EG---CLSEK---EVIREFLRLAVQYDNHYGN 280 (477)
T ss_pred hhhhHhhhcCCceeee--cC---CchHH---HHHHHHHHHHHHHhhcccc
Confidence 9999999999999986 33 12333 445566665554 5554
No 15
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=100.00 E-value=9.1e-34 Score=281.02 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=145.0
Q ss_pred CCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec
Q 009196 240 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 319 (540)
Q Consensus 240 ~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR 319 (540)
+..|+++||.+++++.+.++|+.+.+ ++|+||||||||++++++.|+|++|+++|+++.++++++++ .++||+||+|
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~--~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR 142 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAE--HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIR 142 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhc--CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeC
Confidence 55699999999999999999999973 79999999999999999999999999999999999999995 5899999999
Q ss_pred CCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 009196 320 TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 320 ~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 399 (540)
+++.+ .+..++++.++++|+++|+||.+.... +.++|++|+++++.++ ++||||||||+|++|+.++++ +||
T Consensus 143 ~~~~~--~~~~~~a~~l~~aGad~i~Vd~~~~g~---~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~e~l~--~GA 214 (231)
T TIGR00736 143 GNCIP--LDELIDALNLVDDGFDGIHVDAMYPGK---PYADMDLLKILSEEFN-DKIIIGNNSIDDIESAKEMLK--AGA 214 (231)
T ss_pred CCCCc--chHHHHHHHHHHcCCCEEEEeeCCCCC---chhhHHHHHHHHHhcC-CCcEEEECCcCCHHHHHHHHH--hCC
Confidence 99843 467899999999999999999654321 2289999999999984 499999999999999999997 799
Q ss_pred CeeeecHHHHhC
Q 009196 400 ASCMIARGALIK 411 (540)
Q Consensus 400 DgVMIGRgaL~n 411 (540)
|+||||||+|.+
T Consensus 215 d~VmvgR~~l~~ 226 (231)
T TIGR00736 215 DFVSVARAILKG 226 (231)
T ss_pred CeEEEcHhhccC
Confidence 999999999965
No 16
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=1.7e-33 Score=293.90 Aligned_cols=246 Identities=12% Similarity=0.073 Sum_probs=202.0
Q ss_pred CCCcccccCcccCCcEEEccCCCCC---------CHHHHHHHHH--hCCCEEEeccceechhccCCh-----------hh
Q 009196 174 KTHSREKKLIDFREKLYLAPLTTVG---------NLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-----------SE 231 (540)
Q Consensus 174 ~~~p~e~~~l~lknrliLAPM~~vt---------dlpfR~l~~~--~Gadl~~TEmi~a~~l~~g~~-----------~e 231 (540)
.|.|.++++++++||+++|||++.. +..++++.++ .|+++++||.+.+.+-..+.. ..
T Consensus 3 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~ 82 (337)
T PRK13523 3 LFSPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEG 82 (337)
T ss_pred CCCCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHH
Confidence 6889999999999999999997532 2344444432 589999999988876433221 11
Q ss_pred hhhh--hcccCCCeEEEEecCCc-----------------------------------HHHHHHHHHHHHHhCCCCEEEe
Q 009196 232 WALL--RRHSSEDLFGVQICGAY-----------------------------------PDTLARTVELIDQQCTVDFIDI 274 (540)
Q Consensus 232 ~~ll--~~~~~e~p~~vQL~G~~-----------------------------------p~~~a~AA~~~~~~aG~D~IDI 274 (540)
|+.+ ..|..+.++++||++.. .+.|++||+++. ++|||+|||
T Consensus 83 ~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~-~aGfDgVei 161 (337)
T PRK13523 83 LHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK-EAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEE
Confidence 2222 46788899999997520 267999999998 799999999
Q ss_pred cCC---------CCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCC-C---CChhHHHHHHHHHHHcCC
Q 009196 275 NMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY-F---EGKNRIDSLIADIGTWGA 341 (540)
Q Consensus 275 N~G---------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~-~---e~~~~~~~la~~leeaGv 341 (540)
|+| ||..|.++|.||++|.+|.+++.+||++|+++++.||+||++..- . -+.++..++++.|+++|+
T Consensus 162 h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gv 241 (337)
T PRK13523 162 HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGV 241 (337)
T ss_pred ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCC
Confidence 999 899999999999999999999999999999999999999999621 0 135688999999999999
Q ss_pred cEEEEeccccc----CccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHH
Q 009196 342 SAVTVHGRTRQ----QRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417 (540)
Q Consensus 342 daItVHgRtr~----q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~e 417 (540)
|+|+||+++.. +.+.+ .+|++++++++.+ ++||+++|+|.+++++.+++++ ++||+||+||+++.||||+++
T Consensus 242 D~i~vs~g~~~~~~~~~~~~-~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~-g~~D~V~~gR~~iadP~~~~k 317 (337)
T PRK13523 242 DLIDVSSGAVVPARIDVYPG-YQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQN-NRADLIFIGRELLRNPYFPRI 317 (337)
T ss_pred CEEEeCCCCCCCCCCCCCcc-ccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHc-CCCChHHhhHHHHhCccHHHH
Confidence 99999998732 23333 3789999999998 7999999999999999999987 789999999999999999999
Q ss_pred HHhcCCC
Q 009196 418 IKEQRHW 424 (540)
Q Consensus 418 ik~~~~~ 424 (540)
++++...
T Consensus 318 ~~~~~~~ 324 (337)
T PRK13523 318 AAKELGF 324 (337)
T ss_pred HHHHcCC
Confidence 9987544
No 17
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=8.2e-33 Score=288.73 Aligned_cols=241 Identities=12% Similarity=0.121 Sum_probs=198.2
Q ss_pred CCcccccC-cccCCcEEEccCCCC--------CCHHHHHHHHH--hCCCEEEeccceechhccCCh--------------
Q 009196 175 THSREKKL-IDFREKLYLAPLTTV--------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-------------- 229 (540)
Q Consensus 175 ~~p~e~~~-l~lknrliLAPM~~v--------tdlpfR~l~~~--~Gadl~~TEmi~a~~l~~g~~-------------- 229 (540)
|.|.+++. ++|+||+++|||++. ++....++.++ .|+++++||.+++.+..+...
T Consensus 2 f~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i 81 (338)
T cd04733 2 GQPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDL 81 (338)
T ss_pred CCCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHH
Confidence 78999995 999999999999652 34455555544 489999999988865433221
Q ss_pred hhhhhh--hcccCCCeEEEEecCC-----------------------------------------cHHHHHHHHHHHHHh
Q 009196 230 SEWALL--RRHSSEDLFGVQICGA-----------------------------------------YPDTLARTVELIDQQ 266 (540)
Q Consensus 230 ~e~~ll--~~~~~e~p~~vQL~G~-----------------------------------------~p~~~a~AA~~~~~~ 266 (540)
..|+.+ ..|..+.++++||++. ..++|++||+++. +
T Consensus 82 ~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~-~ 160 (338)
T cd04733 82 EAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQ-E 160 (338)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHH-H
Confidence 112222 4678888999998851 0257999999997 7
Q ss_pred CCCCEEEecCCC---------CCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEec------CCCCCChhHH
Q 009196 267 CTVDFIDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVR------TGYFEGKNRI 329 (540)
Q Consensus 267 aG~D~IDIN~GC---------P~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR------~G~~e~~~~~ 329 (540)
+|||+||||+|| |..|.+++.||++|++|++++.+||++|++++ ++||.||++ .|| +.+++
T Consensus 161 aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~--~~eea 238 (338)
T cd04733 161 AGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGF--TEEDA 238 (338)
T ss_pred cCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCC--CHHHH
Confidence 999999999997 99999999999999999999999999999998 479999997 455 35688
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCC-----------CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSK-----------LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 398 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g-----------~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 398 (540)
.++++.|+++|+++|+||+|+..+.+.. ...|+++++|++.+ ++||+++|+|.+++++.+++++ +.
T Consensus 239 ~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~-g~ 315 (338)
T cd04733 239 LEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALAS-GA 315 (338)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHc-CC
Confidence 9999999999999999999986544421 11368888999998 7999999999999999999997 78
Q ss_pred cCeeeecHHHHhCCCchHHHHhc
Q 009196 399 LASCMIARGALIKPWIFTEIKEQ 421 (540)
Q Consensus 399 aDgVMIGRgaL~nPwif~eik~~ 421 (540)
||+||+||++|.||||+++++++
T Consensus 316 aD~V~lgR~~iadP~~~~k~~~g 338 (338)
T cd04733 316 VDGIGLARPLALEPDLPNKLLAG 338 (338)
T ss_pred CCeeeeChHhhhCccHHHHHhcC
Confidence 99999999999999999999864
No 18
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2e-32 Score=287.55 Aligned_cols=247 Identities=16% Similarity=0.112 Sum_probs=199.8
Q ss_pred CCcccccC-cccCCcEEEccCCC--------CCCHHHHHHHHHh-CCCEEEeccceechhccCCh-----------hhhh
Q 009196 175 THSREKKL-IDFREKLYLAPLTT--------VGNLPFRRVCKVL-GADVTCGEMAMCTNLLQGQA-----------SEWA 233 (540)
Q Consensus 175 ~~p~e~~~-l~lknrliLAPM~~--------vtdlpfR~l~~~~-Gadl~~TEmi~a~~l~~g~~-----------~e~~ 233 (540)
|.|.+++. ++|+||+++|||++ +|+....++.++. |+++++||.+.+.+...+.. ..|+
T Consensus 2 f~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~ 81 (353)
T cd04735 2 FEPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLR 81 (353)
T ss_pred CCCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHHH
Confidence 78999998 99999999999964 2344555554432 69999999998876433221 1233
Q ss_pred hh--hcccCCCeEEEEecCCc----------------------------------------HHHHHHHHHHHHHhCCCCE
Q 009196 234 LL--RRHSSEDLFGVQICGAY----------------------------------------PDTLARTVELIDQQCTVDF 271 (540)
Q Consensus 234 ll--~~~~~e~p~~vQL~G~~----------------------------------------p~~~a~AA~~~~~~aG~D~ 271 (540)
.+ ..|..+..+++||++.. .++|++||+++. ++|||+
T Consensus 82 ~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~-~aGfDg 160 (353)
T cd04735 82 KLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAI-EAGFDG 160 (353)
T ss_pred HHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE
Confidence 22 46888899999996420 257999999998 799999
Q ss_pred EEecCC---------CCCcccccCCccccccCCchHHHHHHHHhccccc----ccEEEEecCCCCCC------hhHHHHH
Q 009196 272 IDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD----KPITIKVRTGYFEG------KNRIDSL 332 (540)
Q Consensus 272 IDIN~G---------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~----iPVtVKiR~G~~e~------~~~~~~l 332 (540)
||||+| ||..|.++|.||++|++|.+++.+|+++|+++++ .++.|++|+++.+. .++..++
T Consensus 161 Veih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i 240 (353)
T cd04735 161 VEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLAL 240 (353)
T ss_pred EEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHH
Confidence 999986 7999999999999999999999999999999997 78888999887552 4678999
Q ss_pred HHHHHHcCCcEEEEecccc--cCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 333 IADIGTWGASAVTVHGRTR--QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr--~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
++.|+++|+|+|+||+++. ...+.+...++++..+++.+..++|||++|+|+|++++.++++. |||+||+||+++.
T Consensus 241 ~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~--gaD~V~~gR~lia 318 (353)
T cd04735 241 VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALET--GADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc--CCChHHHhHHHHh
Confidence 9999999999999998643 22333334677778888776336999999999999999999984 7999999999999
Q ss_pred CCCchHHHHhcCCC
Q 009196 411 KPWIFTEIKEQRHW 424 (540)
Q Consensus 411 nPwif~eik~~~~~ 424 (540)
||++++++++++..
T Consensus 319 dPdl~~k~~~G~~~ 332 (353)
T cd04735 319 DPDWVEKIKEGRED 332 (353)
T ss_pred CccHHHHHHcCChh
Confidence 99999999998654
No 19
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=6.3e-32 Score=282.28 Aligned_cols=244 Identities=10% Similarity=0.090 Sum_probs=199.7
Q ss_pred CCCcccccCcccCCcEEEccCCCC--------CCHHHHHHHHH-hCCCEEEeccceechhccCChh-----------hhh
Q 009196 174 KTHSREKKLIDFREKLYLAPLTTV--------GNLPFRRVCKV-LGADVTCGEMAMCTNLLQGQAS-----------EWA 233 (540)
Q Consensus 174 ~~~p~e~~~l~lknrliLAPM~~v--------tdlpfR~l~~~-~Gadl~~TEmi~a~~l~~g~~~-----------e~~ 233 (540)
.|.|.++++++|+||+++|||++. |+...+++.++ .| ++++||.+.+.+....... .|+
T Consensus 2 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr 80 (338)
T cd02933 2 LFSPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWK 80 (338)
T ss_pred CCCCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHH
Confidence 478999999999999999999642 23444444433 37 9999999998775433221 122
Q ss_pred hh--hcccCCCeEEEEecCC----------------------------------c---------------HHHHHHHHHH
Q 009196 234 LL--RRHSSEDLFGVQICGA----------------------------------Y---------------PDTLARTVEL 262 (540)
Q Consensus 234 ll--~~~~~e~p~~vQL~G~----------------------------------~---------------p~~~a~AA~~ 262 (540)
.+ ..|..+.++++||.+. . .+.|++||++
T Consensus 81 ~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~ 160 (338)
T cd02933 81 KVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARN 160 (338)
T ss_pred HHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 4678888999998641 0 2578999999
Q ss_pred HHHhCCCCEEEecCCC---------CCcccccCCccccccCCchHHHHHHHHhcccccc-cEEEEecCC-------CCCC
Q 009196 263 IDQQCTVDFIDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTG-------YFEG 325 (540)
Q Consensus 263 ~~~~aG~D~IDIN~GC---------P~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i-PVtVKiR~G-------~~e~ 325 (540)
+. ++|||+||||+|| |..|.++|.||++|.+|.+++.+||++|+++++. ||+||++.. +..+
T Consensus 161 a~-~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 161 AI-EAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HH-HcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence 98 7999999999999 9999999999999999999999999999999854 899998852 1124
Q ss_pred hhHHHHHHHHHHHcCCcEEEE-ecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 326 KNRIDSLIADIGTWGASAVTV-HGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItV-HgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
.++..++++.|++.|+|+|+| ||++..+. ...+|+++++|++.+ ++|||++|+|. ++++.+++++ ++||+||+
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~~~~~~ik~~~--~ipvi~~G~i~-~~~a~~~l~~-g~~D~V~~ 313 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVEPRVAGNP--EDQPPDFLDFLRKAF--KGPLIAAGGYD-AESAEAALAD-GKADLVAF 313 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCcc--cccchHHHHHHHHHc--CCCEEEECCCC-HHHHHHHHHc-CCCCEEEe
Confidence 567889999999999999999 66654433 557899999999998 79999999997 9999999987 78999999
Q ss_pred cHHHHhCCCchHHHHhcCCCC
Q 009196 405 ARGALIKPWIFTEIKEQRHWD 425 (540)
Q Consensus 405 GRgaL~nPwif~eik~~~~~~ 425 (540)
||++|.||||++++++++.++
T Consensus 314 gR~~ladP~~~~k~~~g~~~~ 334 (338)
T cd02933 314 GRPFIANPDLVERLKNGAPLN 334 (338)
T ss_pred CHhhhhCcCHHHHHhcCCCCC
Confidence 999999999999999998764
No 20
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=100.00 E-value=4.8e-32 Score=278.63 Aligned_cols=234 Identities=18% Similarity=0.225 Sum_probs=190.1
Q ss_pred ccccCcccCCcEEEccCC-CCCCHHHHHHHHHhCCCEEEeccceec-hhccCC---------------------------
Q 009196 178 REKKLIDFREKLYLAPLT-TVGNLPFRRVCKVLGADVTCGEMAMCT-NLLQGQ--------------------------- 228 (540)
Q Consensus 178 ~e~~~l~lknrliLAPM~-~vtdlpfR~l~~~~Gadl~~TEmi~a~-~l~~g~--------------------------- 228 (540)
.+..+++|+|++++|.=. +-+...++++.. .|++.+++..+..+ +- .++
T Consensus 4 ~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~-~G~Gavv~kti~~~~~~-~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~ 81 (299)
T cd02940 4 VTFCGIKFPNPFGLASAPPTTSYPMIRRAFE-AGWGGAVTKTLGLDKDI-VTNVSPRIARLRTSGRGQIGFNNIELISEK 81 (299)
T ss_pred eEECCEEcCCCCEeCCcCCCCCHHHHHHHHH-hCCCEEEeccccCcCCC-CCCCCCeEEEeCCCchhcccccCCcccccc
Confidence 356789999999999721 113345566554 58888877766655 21 110
Q ss_pred -hhhh-hhh---hcccCCCeEEEEecCC-cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHH
Q 009196 229 -ASEW-ALL---RRHSSEDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302 (540)
Q Consensus 229 -~~e~-~ll---~~~~~e~p~~vQL~G~-~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eI 302 (540)
...| ..+ ..+..+.|+++||+|. ++++|.++|+.++ ++|+|+||||+|||.. ...+++|++|+++|+.+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~-~~gad~ielN~sCP~~-~~~~~~G~~l~~~~~~~~~i 159 (299)
T cd02940 82 PLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVE-EAGADALELNFSCPHG-MPERGMGAAVGQDPELVEEI 159 (299)
T ss_pred CHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH-hcCCCEEEEECCCCCC-CCCCCCchhhccCHHHHHHH
Confidence 0011 001 1111267999999998 9999999999997 6799999999999997 56678999999999999999
Q ss_pred HHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEE---------------------EecccccCccCCCcC-
Q 009196 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT---------------------VHGRTRQQRYSKLAD- 360 (540)
Q Consensus 303 v~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaIt---------------------VHgRtr~q~y~g~ad- 360 (540)
++++++.+++||+||+|.+. .++.++++.++++|+++|+ +|+|++.++|+|++.
T Consensus 160 v~~v~~~~~~Pv~vKl~~~~----~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~ 235 (299)
T cd02940 160 CRWVREAVKIPVIAKLTPNI----TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVK 235 (299)
T ss_pred HHHHHHhcCCCeEEECCCCc----hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcc
Confidence 99999999999999999854 3578999999999999998 567888889999988
Q ss_pred ---HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh-CCCchHHHHhc
Q 009196 361 ---WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 421 (540)
Q Consensus 361 ---w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwif~eik~~ 421 (540)
|++|+++++.+..++|||+||||.|++|+.+++. +|||+||||||++. .|.++.+|.++
T Consensus 236 p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~--aGA~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 236 PIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLL--LGASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHH--cCCChheEceeecccCCcHHHHHhhh
Confidence 9999999998844699999999999999999996 89999999999998 99999998753
No 21
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=8.8e-32 Score=275.41 Aligned_cols=228 Identities=19% Similarity=0.237 Sum_probs=188.8
Q ss_pred cccCcccCCcEEEcc-CCCCCCHHHHHHHHHhCCCEEEeccceechhccCChh----------------------hh-hh
Q 009196 179 EKKLIDFREKLYLAP-LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS----------------------EW-AL 234 (540)
Q Consensus 179 e~~~l~lknrliLAP-M~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~----------------------e~-~l 234 (540)
+..+++|+|++++|- +-+ +...+|+++...|++.++++++..++.. ++.. .| ..
T Consensus 3 ~~~G~~~~nP~~~aag~~~-~~~~~~~~~~~g~~g~v~~~ti~~~~~~-~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~ 80 (296)
T cd04740 3 ELAGLRLKNPVILASGTFG-FGEELSRVADLGKLGAIVTKSITLEPRE-GNPPPRVVETPGGMLNAIGLQNPGVEAFLEE 80 (296)
T ss_pred EECCEEcCCCCEECCCCCC-CHHHHHHHHhcCCceEEEECCcCCCCCC-CCCCCeEEecCcceeeecCCCCcCHHHHHHH
Confidence 567899999999983 222 7789999998777999999999887654 2211 11 11
Q ss_pred hh--cccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccc
Q 009196 235 LR--RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK 312 (540)
Q Consensus 235 l~--~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i 312 (540)
+. .+..+.|+++||+|+++++|+++|+++. ++|+|+||||++||..+ +.|+.++.+++++.+|++++++.+++
T Consensus 81 ~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~-~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 81 LLPWLREFGTPVIASIAGSTVEEFVEVAEKLA-DAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHhhcCCCcEEEEEecCCHHHHHHHHHHHH-HcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhccCC
Confidence 11 1345689999999999999999999997 67999999999999853 34888999999999999999999999
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEeccc---------cc-------CccCCCc----CHHHHHHHHHHcC
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRT---------RQ-------QRYSKLA----DWDYIYQCARKAS 372 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRt---------r~-------q~y~g~a----dw~~I~~i~~~~~ 372 (540)
||+||++..+ ++..++++.++++|+|+|++++++ +. +.+++++ .|++++++++.+
T Consensus 156 Pv~vKl~~~~----~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~- 230 (296)
T cd04740 156 PVIVKLTPNV----TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV- 230 (296)
T ss_pred CEEEEeCCCc----hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-
Confidence 9999998753 357899999999999999986543 11 3466655 468999999988
Q ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhc
Q 009196 373 DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421 (540)
Q Consensus 373 ~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~ 421 (540)
++|||++|||.|++|+.+++. .|||+|||||+++.+||+|.+++++
T Consensus 231 -~ipii~~GGI~~~~da~~~l~--~GAd~V~igra~l~~p~~~~~i~~~ 276 (296)
T cd04740 231 -EIPIIGVGGIASGEDALEFLM--AGASAVQVGTANFVDPEAFKEIIEG 276 (296)
T ss_pred -CCCEEEECCCCCHHHHHHHHH--cCCCEEEEchhhhcChHHHHHHHHH
Confidence 799999999999999999997 6899999999999999999999764
No 22
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=3.1e-32 Score=281.88 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=200.7
Q ss_pred CCcccccCcccCCcEEEccCCCC--------CCHHHHHHHHH--hCCCEEEeccceechhccCCh-----------hhhh
Q 009196 175 THSREKKLIDFREKLYLAPLTTV--------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-----------SEWA 233 (540)
Q Consensus 175 ~~p~e~~~l~lknrliLAPM~~v--------tdlpfR~l~~~--~Gadl~~TEmi~a~~l~~g~~-----------~e~~ 233 (540)
|.|.+++.++|+||+++|||++. ++..++++.++ .|+++++||.+.+.+...+.. ..|+
T Consensus 1 f~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 1 FSPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred CCCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 67899999999999999999752 33455555544 589999999998887644321 1233
Q ss_pred hh--hcccCCCeEEEEecCCc--------------------------------------HHHHHHHHHHHHHhCCCCEEE
Q 009196 234 LL--RRHSSEDLFGVQICGAY--------------------------------------PDTLARTVELIDQQCTVDFID 273 (540)
Q Consensus 234 ll--~~~~~e~p~~vQL~G~~--------------------------------------p~~~a~AA~~~~~~aG~D~ID 273 (540)
.+ ..|..+.++++||++.. .++|++||+++. ++|||+||
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~-~aGfDgve 159 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAK-EAGFDGVE 159 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 22 46778888888887420 267999999998 79999999
Q ss_pred ecCC---------CCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCC----CChhHHHHHHHHHHH
Q 009196 274 INMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYF----EGKNRIDSLIADIGT 338 (540)
Q Consensus 274 IN~G---------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~----e~~~~~~~la~~lee 338 (540)
||+| ||..+.+++.||++|++|++++.+++++|++++ ++||.||++.... .+.+++.++++.|++
T Consensus 160 ih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~ 239 (327)
T cd02803 160 IHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEE 239 (327)
T ss_pred EcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHH
Confidence 9998 788899999999999999999999999999998 7899999986421 135678999999999
Q ss_pred cCCcEEEEecccccCccC--------CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 339 WGASAVTVHGRTRQQRYS--------KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 339 aGvdaItVHgRtr~q~y~--------g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
+|+|+|+||+++..+.+. ...++++++.+++.+ ++||+++|+|.+++++.++++. .+||+||+||+++.
T Consensus 240 ~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~-g~aD~V~igR~~la 316 (327)
T cd02803 240 AGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPEVAEEILAE-GKADLVALGRALLA 316 (327)
T ss_pred cCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHC-CCCCeeeecHHHHh
Confidence 999999999987654332 245688999999998 7999999999999999999986 79999999999999
Q ss_pred CCCchHHHHhc
Q 009196 411 KPWIFTEIKEQ 421 (540)
Q Consensus 411 nPwif~eik~~ 421 (540)
||+|+.+++++
T Consensus 317 dP~l~~k~~~g 327 (327)
T cd02803 317 DPDLPNKAREG 327 (327)
T ss_pred CccHHHHHhcC
Confidence 99999998763
No 23
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.98 E-value=2.1e-31 Score=282.56 Aligned_cols=248 Identities=13% Similarity=0.123 Sum_probs=197.8
Q ss_pred CCCcccccCcccCCcEEEccCCC--C-------CCHHHHHHHHH--hCCCEEEeccceechhccC----C--------h-
Q 009196 174 KTHSREKKLIDFREKLYLAPLTT--V-------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQG----Q--------A- 229 (540)
Q Consensus 174 ~~~p~e~~~l~lknrliLAPM~~--v-------tdlpfR~l~~~--~Gadl~~TEmi~a~~l~~g----~--------~- 229 (540)
.|.|.++++++|+||+++|||++ . |+....++.++ .|+++++||.+.+.+...+ . .
T Consensus 1 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd02931 1 LFEPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTA 80 (382)
T ss_pred CCCCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHH
Confidence 37899999999999999999964 2 22333444332 5899999998877654211 1 0
Q ss_pred --hhhhhh--hcccCCCeEEEEecCC----------------------------c-------------HHHHHHHHHHHH
Q 009196 230 --SEWALL--RRHSSEDLFGVQICGA----------------------------Y-------------PDTLARTVELID 264 (540)
Q Consensus 230 --~e~~ll--~~~~~e~p~~vQL~G~----------------------------~-------------p~~~a~AA~~~~ 264 (540)
..|+.+ ..|..+.++++||++. . .+.|++||+++.
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~ 160 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAK 160 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 123322 4688899999999632 0 157999999998
Q ss_pred HhCCCCEEEecC---CC-------CCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecC-----CCCC---
Q 009196 265 QQCTVDFIDINM---GC-------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT-----GYFE--- 324 (540)
Q Consensus 265 ~~aG~D~IDIN~---GC-------P~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~-----G~~e--- 324 (540)
++|||+||||+ || |..|.++|.||++|++|++++.+||++|++++ ++||.||++. ++..
T Consensus 161 -~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~ 239 (382)
T cd02931 161 -EAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGAL 239 (382)
T ss_pred -HcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccc
Confidence 79999999998 76 78899999999999999999999999999998 5799999984 1111
Q ss_pred ----------ChhHHHHHHHHHHHcCCcEEEEecccccCcc-------CCCc-CHHHHHHHHHHcCCCceEEEeCCCCCH
Q 009196 325 ----------GKNRIDSLIADIGTWGASAVTVHGRTRQQRY-------SKLA-DWDYIYQCARKASDDLQVLGNGDIYSY 386 (540)
Q Consensus 325 ----------~~~~~~~la~~leeaGvdaItVHgRtr~q~y-------~g~a-dw~~I~~i~~~~~~~IPVIgNGdI~s~ 386 (540)
+.+++.++++.|+++|+|+|+||+++..+.+ .++. .|++++.+++.+ ++|||++|+|.++
T Consensus 240 ~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~ 317 (382)
T cd02931 240 PGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDP 317 (382)
T ss_pred cccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCH
Confidence 2367889999999999999999998754322 1222 367889999998 7999999999999
Q ss_pred HHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCC
Q 009196 387 LDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWD 425 (540)
Q Consensus 387 eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~ 425 (540)
+++.+++++ ++||+||+||++|.||||++++++++..+
T Consensus 318 ~~~~~~l~~-g~~D~V~~gR~~ladP~l~~k~~~g~~~~ 355 (382)
T cd02931 318 ELASEAINE-GIADMISLGRPLLADPDVVNKIRRGRFKN 355 (382)
T ss_pred HHHHHHHHc-CCCCeeeechHhHhCccHHHHHHcCCccc
Confidence 999999997 88999999999999999999999987543
No 24
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.98 E-value=1.5e-31 Score=280.92 Aligned_cols=246 Identities=14% Similarity=0.082 Sum_probs=198.7
Q ss_pred CCcccccCcccCCcEEEccCCC-C------CCHHHHHHHHH--hCCCEEEeccceechhccCCh-----------hhhhh
Q 009196 175 THSREKKLIDFREKLYLAPLTT-V------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-----------SEWAL 234 (540)
Q Consensus 175 ~~p~e~~~l~lknrliLAPM~~-v------tdlpfR~l~~~--~Gadl~~TEmi~a~~l~~g~~-----------~e~~l 234 (540)
|+|.++++++|+||+++|||+. . ++..++++.++ .|+++++||.+++.+...+.. ..|+.
T Consensus 2 f~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~ 81 (353)
T cd02930 2 LSPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRL 81 (353)
T ss_pred CCCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHH
Confidence 7899999999999999999973 2 34455555543 589999999988876433221 12222
Q ss_pred h--hcccCCCeEEEEecCC----------------------------------cHHHHHHHHHHHHHhCCCCEEEecCC-
Q 009196 235 L--RRHSSEDLFGVQICGA----------------------------------YPDTLARTVELIDQQCTVDFIDINMG- 277 (540)
Q Consensus 235 l--~~~~~e~p~~vQL~G~----------------------------------~p~~~a~AA~~~~~~aG~D~IDIN~G- 277 (540)
+ ..|..+.++++||++. -.+.|++||+++. ++|||+||||++
T Consensus 82 l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~-~aGfDgVeih~ah 160 (353)
T cd02930 82 ITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAR-EAGYDGVEIMGSE 160 (353)
T ss_pred HHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEeccc
Confidence 2 4688899999999642 1367999999997 799999999876
Q ss_pred --------CCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCC------ChhHHHHHHHHHHHcCCcE
Q 009196 278 --------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE------GKNRIDSLIADIGTWGASA 343 (540)
Q Consensus 278 --------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e------~~~~~~~la~~leeaGvda 343 (540)
||..+.+++.||++|++|++++.+||++|+++++.++.|++|+++.+ +.+++.++++.|+++|+|+
T Consensus 161 GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~ 240 (353)
T cd02930 161 GYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADI 240 (353)
T ss_pred chHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999988888888887654 4467899999999999999
Q ss_pred EEEec-----cccc-CccCCCcCH-HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchH
Q 009196 344 VTVHG-----RTRQ-QRYSKLADW-DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 416 (540)
Q Consensus 344 ItVHg-----Rtr~-q~y~g~adw-~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~ 416 (540)
|+|+. ++.. +.+.+.+.| ++++++++.+ ++||+++|+|.+++++.+++++ +++|+||+||++|.||||++
T Consensus 241 i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~-g~~D~V~~gR~~l~dP~~~~ 317 (353)
T cd02930 241 LNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLAD-GDADMVSMARPFLADPDFVA 317 (353)
T ss_pred EEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHC-CCCChhHhhHHHHHCccHHH
Confidence 99953 2221 123333334 4567899988 7999999999999999999987 88999999999999999999
Q ss_pred HHHhcCCC
Q 009196 417 EIKEQRHW 424 (540)
Q Consensus 417 eik~~~~~ 424 (540)
++++++.-
T Consensus 318 k~~~g~~~ 325 (353)
T cd02930 318 KAAAGRAD 325 (353)
T ss_pred HHHhCCcc
Confidence 99998753
No 25
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.97 E-value=7.6e-31 Score=277.22 Aligned_cols=246 Identities=14% Similarity=0.072 Sum_probs=196.3
Q ss_pred CCCCcccccCcccCCcEEEccCCCCC----CHHHH-HHH--HHhCCCEEEeccceechhccCCh------------hhhh
Q 009196 173 LKTHSREKKLIDFREKLYLAPLTTVG----NLPFR-RVC--KVLGADVTCGEMAMCTNLLQGQA------------SEWA 233 (540)
Q Consensus 173 ~~~~p~e~~~l~lknrliLAPM~~vt----dlpfR-~l~--~~~Gadl~~TEmi~a~~l~~g~~------------~e~~ 233 (540)
..|.|.++++++|+||+++|||++.. ...+. ++. .+.|+++++||.+.+.+-..+.. ..|+
T Consensus 7 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~ 86 (370)
T cd02929 7 ILFEPIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLA 86 (370)
T ss_pred ccCCCccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHH
Confidence 47899999999999999999997532 12222 222 13589999999988876433221 1122
Q ss_pred hh--hcccCCCeEEEEecCC-----------------------------------------cHHHHHHHHHHHHHhCCCC
Q 009196 234 LL--RRHSSEDLFGVQICGA-----------------------------------------YPDTLARTVELIDQQCTVD 270 (540)
Q Consensus 234 ll--~~~~~e~p~~vQL~G~-----------------------------------------~p~~~a~AA~~~~~~aG~D 270 (540)
.+ ..|..+.++++||++. -.++|++||+++. ++|||
T Consensus 87 ~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~-~aGfD 165 (370)
T cd02929 87 AMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRAR-DAGFD 165 (370)
T ss_pred HHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence 22 4678888999998531 0257999999998 79999
Q ss_pred EEEecCCC---------CCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCC--------ChhHHHHHH
Q 009196 271 FIDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE--------GKNRIDSLI 333 (540)
Q Consensus 271 ~IDIN~GC---------P~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e--------~~~~~~~la 333 (540)
+||||+|| |..|.++|.||++|++|.+++.+||++|+++++.++.|++|+++++ +.+++.+++
T Consensus 166 gVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~ 245 (370)
T cd02929 166 IVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFV 245 (370)
T ss_pred EEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHH
Confidence 99999999 9999999999999999999999999999999988888888887643 245778899
Q ss_pred HHHHHcCCcEEEEeccccc------CccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 334 ADIGTWGASAVTVHGRTRQ------QRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 334 ~~leeaGvdaItVHgRtr~------q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
+.|++. +|+|.|+..... +.+.....|++++++++.+ ++|||++|+|.+++++.+++++ ++||+||+||+
T Consensus 246 ~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~-g~~D~V~~gR~ 321 (370)
T cd02929 246 EMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKS-GILDLIGAARP 321 (370)
T ss_pred HHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHc-CCCCeeeechH
Confidence 999876 899998764311 1122334588899999998 7999999999999999999997 88999999999
Q ss_pred HHhCCCchHHHHhcCC
Q 009196 408 ALIKPWIFTEIKEQRH 423 (540)
Q Consensus 408 aL~nPwif~eik~~~~ 423 (540)
+|.||||++++++++.
T Consensus 322 ~ladP~l~~k~~~g~~ 337 (370)
T cd02929 322 SIADPFLPKKIREGRI 337 (370)
T ss_pred hhhCchHHHHHHcCCc
Confidence 9999999999999864
No 26
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.97 E-value=8.9e-31 Score=273.15 Aligned_cols=240 Identities=13% Similarity=0.154 Sum_probs=194.3
Q ss_pred CCcccccCcccCCcEEEccCCCC-------CCHHHHHHHHH--hCCCEEEeccceechhccCChh-----------hhhh
Q 009196 175 THSREKKLIDFREKLYLAPLTTV-------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQGQAS-----------EWAL 234 (540)
Q Consensus 175 ~~p~e~~~l~lknrliLAPM~~v-------tdlpfR~l~~~--~Gadl~~TEmi~a~~l~~g~~~-----------e~~l 234 (540)
|.|.++++++|+||+++|||+.. ++..+.++.++ .|+++++||.+.+.+..+.... .|+.
T Consensus 2 f~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~ 81 (336)
T cd02932 2 FTPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKR 81 (336)
T ss_pred CCCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHH
Confidence 68999999999999999999742 23344444433 5899999999988765433211 2222
Q ss_pred h--hcccCCCeEEEEecCC---------------------------------------------------cHHHHHHHHH
Q 009196 235 L--RRHSSEDLFGVQICGA---------------------------------------------------YPDTLARTVE 261 (540)
Q Consensus 235 l--~~~~~e~p~~vQL~G~---------------------------------------------------~p~~~a~AA~ 261 (540)
+ ..|..+..+++||++. -.++|++||+
T Consensus 82 l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~ 161 (336)
T cd02932 82 IVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAAR 161 (336)
T ss_pred HHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 2 3577888899998531 0267899999
Q ss_pred HHHHhCCCCEEEecCCC---------CCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecC------CCCC
Q 009196 262 LIDQQCTVDFIDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT------GYFE 324 (540)
Q Consensus 262 ~~~~~aG~D~IDIN~GC---------P~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~------G~~e 324 (540)
++. ++|||+||||+|| |..+.++++||++|++|++++.+|+++|++++ ++||.||++. |+
T Consensus 162 ~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~-- 238 (336)
T cd02932 162 RAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGW-- 238 (336)
T ss_pred HHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCC--
Confidence 997 6899999999997 88999999999999999999999999999999 7899999984 34
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecc--cccCccCC--CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 325 GKNRIDSLIADIGTWGASAVTVHGR--TRQQRYSK--LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVHgR--tr~q~y~g--~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
+.+++.++++.|++.|+++|+||.. +..+.+.. ..++++++++++.+ ++||+++|+|.+++++.++++. +.||
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~G~i~t~~~a~~~l~~-g~aD 315 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA--GIPVIAVGLITDPEQAEAILES-GRAD 315 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHc-CCCC
Confidence 3578899999999999999999853 44333222 23468889999998 7999999999999999999986 7799
Q ss_pred eeeecHHHHhCCCchHHHHh
Q 009196 401 SCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 401 gVMIGRgaL~nPwif~eik~ 420 (540)
+||+||+++.||+|+.++.+
T Consensus 316 ~V~~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 316 LVALGRELLRNPYWPLHAAA 335 (336)
T ss_pred eehhhHHHHhCccHHHHHhh
Confidence 99999999999999998753
No 27
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.97 E-value=1.1e-30 Score=274.91 Aligned_cols=244 Identities=14% Similarity=0.165 Sum_probs=196.8
Q ss_pred CCcccccCcccCCcEEEccCCCC-------CCHHHHHHHHH--hCCCEEEeccceechhccC----Ch--------hhhh
Q 009196 175 THSREKKLIDFREKLYLAPLTTV-------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQG----QA--------SEWA 233 (540)
Q Consensus 175 ~~p~e~~~l~lknrliLAPM~~v-------tdlpfR~l~~~--~Gadl~~TEmi~a~~l~~g----~~--------~e~~ 233 (540)
|.|.++++++++||+++|||++. |+..+.++.++ .|+++++||.+.+.+-... .. ..|+
T Consensus 2 f~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~ 81 (361)
T cd04747 2 FTPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWK 81 (361)
T ss_pred CCCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHH
Confidence 68999999999999999999742 44555555443 5899999998888532211 11 1122
Q ss_pred hh--hcccCCCeEEEEecCCc----------------------------------------HHHHHHHHHHHHHhCCCCE
Q 009196 234 LL--RRHSSEDLFGVQICGAY----------------------------------------PDTLARTVELIDQQCTVDF 271 (540)
Q Consensus 234 ll--~~~~~e~p~~vQL~G~~----------------------------------------p~~~a~AA~~~~~~aG~D~ 271 (540)
.+ ..|..+.++++||++.. .+.|++||+++. ++|||+
T Consensus 82 ~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~-~aGfDg 160 (361)
T cd04747 82 KVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADAR-RLGFDG 160 (361)
T ss_pred HHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE
Confidence 22 46888899999996411 147999999998 799999
Q ss_pred EEecCCC---------CCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCC---------CChhHHHH
Q 009196 272 IDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYF---------EGKNRIDS 331 (540)
Q Consensus 272 IDIN~GC---------P~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~---------e~~~~~~~ 331 (540)
||||++| |..|.++++||++|.+|.+++.+||++|++++ ++||.||++. |. .+.++...
T Consensus 161 Veih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~~~~~~~~~g~~~~e~~~ 239 (361)
T cd04747 161 IELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WKQQDYTARLADTPDELEA 239 (361)
T ss_pred EEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-ccccccccCCCCCHHHHHH
Confidence 9999999 99999999999999999999999999999998 5799999983 21 23457788
Q ss_pred HHHHHHHcCCcEEEEeccc-ccCccCCCcCHHHHHHHHHHcCCCceEEEeCCC------------------CCHHHHHHH
Q 009196 332 LIADIGTWGASAVTVHGRT-RQQRYSKLADWDYIYQCARKASDDLQVLGNGDI------------------YSYLDWNKH 392 (540)
Q Consensus 332 la~~leeaGvdaItVHgRt-r~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI------------------~s~eDa~~~ 392 (540)
+++.|+++|+|+|++..+. ..+.|.+ .+|+++..+++.+ ++||+++|+| .|++++.++
T Consensus 240 ~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~ 316 (361)
T cd04747 240 LLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAGWTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLER 316 (361)
T ss_pred HHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHHHHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHH
Confidence 9999999999998886653 2344543 4688888899988 7999999999 699999999
Q ss_pred HhcCCCcCeeeecHHHHhCCCchHHHHhcCCC
Q 009196 393 KSDCPELASCMIARGALIKPWIFTEIKEQRHW 424 (540)
Q Consensus 393 l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~ 424 (540)
+++ ++||+||+||++|.||||++++++++.-
T Consensus 317 l~~-g~~D~V~~gR~~iadP~~~~k~~~g~~~ 347 (361)
T cd04747 317 LER-GEFDLVAVGRALLSDPAWVAKVREGRLD 347 (361)
T ss_pred HHC-CCCCeehhhHHHHhCcHHHHHHHcCCcc
Confidence 987 8899999999999999999999998753
No 28
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.97 E-value=3.2e-29 Score=257.37 Aligned_cols=229 Identities=17% Similarity=0.243 Sum_probs=181.8
Q ss_pred ccccCcccCCcEEEcc-CCCCCCHHHHHHHHHhCCCEEEeccceechhccCCh----------------------hhhh-
Q 009196 178 REKKLIDFREKLYLAP-LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQA----------------------SEWA- 233 (540)
Q Consensus 178 ~e~~~l~lknrliLAP-M~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~----------------------~e~~- 233 (540)
.+..++.|+||+++|. +.+.+. .+.+.+...|++.+++..+..++-. +++ ..|.
T Consensus 4 ~~~~G~~~~nPv~~aag~~~~~~-~~~~~~~~~g~g~v~~kti~~~~~~-g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~ 81 (301)
T PRK07259 4 VELPGLKLKNPVMPASGTFGFGG-EYARFYDLNGLGAIVTKSTTLEPRE-GNPTPRIAETPGGMLNAIGLQNPGVDAFIE 81 (301)
T ss_pred eEECCEECCCCcEECCcCCCCCH-HHHHHhhhcCCcEEEeCCCCCCCCC-CCCCCcEEecCCceeecCCCCCcCHHHHHH
Confidence 4677899999999986 444344 4444555689998888777655421 110 1111
Q ss_pred hhh--cccCCCeEEEEecCCcHHHHHHHHHHHHHhCC-CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc
Q 009196 234 LLR--RHSSEDLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310 (540)
Q Consensus 234 ll~--~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG-~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v 310 (540)
.+. ....+.|+++||+|+++++|+++|++++ ++| +|+||||++||+.. +.|..++++++++.+|+++|++++
T Consensus 82 ~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~-~aG~~D~iElN~~cP~~~----~gg~~~~~~~~~~~eiv~~vr~~~ 156 (301)
T PRK07259 82 EELPWLEEFDTPIIANVAGSTEEEYAEVAEKLS-KAPNVDAIELNISCPNVK----HGGMAFGTDPELAYEVVKAVKEVV 156 (301)
T ss_pred HHHHHHhccCCcEEEEeccCCHHHHHHHHHHHh-ccCCcCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhc
Confidence 111 1233689999999999999999999997 788 99999999999842 237789999999999999999999
Q ss_pred cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEeccccc----------------CccCCCc----CHHHHHHHHHH
Q 009196 311 DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ----------------QRYSKLA----DWDYIYQCARK 370 (540)
Q Consensus 311 ~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~----------------q~y~g~a----dw~~I~~i~~~ 370 (540)
++||+||++... ++..++++.++++|+|+|++++++.. +++++++ .+++++++++.
T Consensus 157 ~~pv~vKl~~~~----~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~ 232 (301)
T PRK07259 157 KVPVIVKLTPNV----TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQA 232 (301)
T ss_pred CCCEEEEcCCCc----hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHh
Confidence 999999999743 36789999999999999998764321 2244433 58999999998
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhc
Q 009196 371 ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421 (540)
Q Consensus 371 ~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~ 421 (540)
+ ++|||++|||.|++|+.+++. .|||+|||||+++.+||+|.+++++
T Consensus 233 ~--~ipvi~~GGI~~~~da~~~l~--aGAd~V~igr~ll~~P~~~~~i~~~ 279 (301)
T PRK07259 233 V--DIPIIGMGGISSAEDAIEFIM--AGASAVQVGTANFYDPYAFPKIIEG 279 (301)
T ss_pred C--CCCEEEECCCCCHHHHHHHHH--cCCCceeEcHHHhcCcHHHHHHHHH
Confidence 8 799999999999999999997 6899999999999999999999764
No 29
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.97 E-value=1.7e-29 Score=270.93 Aligned_cols=233 Identities=17% Similarity=0.189 Sum_probs=186.4
Q ss_pred ccccCcccCCcEEEc--cCCCCCCHHHHHHHHHhCCCEEEeccceechhccCC-h-------------------------
Q 009196 178 REKKLIDFREKLYLA--PLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ-A------------------------- 229 (540)
Q Consensus 178 ~e~~~l~lknrliLA--PM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~-~------------------------- 229 (540)
.+..+++|+|++++| |+++ ++.-.+++.. .|++.+++..+. ....+.. +
T Consensus 6 ~~~~Gl~l~nPv~~aag~~~~-~~~~~~~~~~-~g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~~ 82 (420)
T PRK08318 6 ITFCGIKSPNPFWLASAPPTN-KYYNVARAFE-AGWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDRP 82 (420)
T ss_pred EEECCEecCCCcEeCCcCCCC-CHHHHHHHHH-hCCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCcccccccC
Confidence 466789999999999 4443 3344455554 688877666554 2111100 0
Q ss_pred -hhh-h---hhhcccCCCeEEEEecCC-cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHH
Q 009196 230 -SEW-A---LLRRHSSEDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGII 303 (540)
Q Consensus 230 -~e~-~---ll~~~~~e~p~~vQL~G~-~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv 303 (540)
..| . .+..+..+.|+++||+|. ++++|+++|+.++ ++|+|+||||+|||. .+..+++|++|+++|+.+.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~-~~g~d~ielN~scP~-~~~~~~~g~~~~~~~~~~~~i~ 160 (420)
T PRK08318 83 LEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVE-ETGADGIELNFGCPH-GMSERGMGSAVGQVPELVEMYT 160 (420)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCC-CccccCCcccccCCHHHHHHHH
Confidence 000 0 111122357899999999 9999999999997 689999999999999 4556789999999999999999
Q ss_pred HHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEE---------------------EecccccCccCCCcC--
Q 009196 304 EATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT---------------------VHGRTRQQRYSKLAD-- 360 (540)
Q Consensus 304 ~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaIt---------------------VHgRtr~q~y~g~ad-- 360 (540)
+++++.+++||+||+|... .++.++++.++++|+++|+ +|+|+..++|+|++.
T Consensus 161 ~~v~~~~~~Pv~vKl~p~~----~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p 236 (420)
T PRK08318 161 RWVKRGSRLPVIVKLTPNI----TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKP 236 (420)
T ss_pred HHHHhccCCcEEEEcCCCc----ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhH
Confidence 9999999999999999754 3478899999999999999 577888889999884
Q ss_pred --HHHHHHHHHHcCC-CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh-CCCchHHHHhc
Q 009196 361 --WDYIYQCARKASD-DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 421 (540)
Q Consensus 361 --w~~I~~i~~~~~~-~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwif~eik~~ 421 (540)
|++|+++++.+.. ++||||||||+|++|+.+++. +|||+||||||++. .|.++.+|..+
T Consensus 237 ~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~--aGA~~Vqi~ta~~~~gp~ii~~I~~~ 299 (420)
T PRK08318 237 IALNMVAEIARDPETRGLPISGIGGIETWRDAAEFIL--LGAGTVQVCTAAMQYGFRIVEDMISG 299 (420)
T ss_pred HHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHH--hCCChheeeeeeccCCchhHHHHHHH
Confidence 9999999998631 599999999999999999997 89999999999999 89999999764
No 30
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=1.7e-29 Score=289.02 Aligned_cols=245 Identities=14% Similarity=0.258 Sum_probs=194.5
Q ss_pred CCCCCcccccCcccCCcEEEccCCCCC-------CHHHHHHHHH--hCCCEEEeccceechhccCChh-----------h
Q 009196 172 SLKTHSREKKLIDFREKLYLAPLTTVG-------NLPFRRVCKV--LGADVTCGEMAMCTNLLQGQAS-----------E 231 (540)
Q Consensus 172 ~~~~~p~e~~~l~lknrliLAPM~~vt-------dlpfR~l~~~--~Gadl~~TEmi~a~~l~~g~~~-----------e 231 (540)
...|.|.++++++|+||++++||+.+. +....++..+ .|+++++||.+.+.+-.+.... .
T Consensus 397 ~~Lf~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~ 476 (765)
T PRK08255 397 PPMFTPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAA 476 (765)
T ss_pred ccccCccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHH
Confidence 457999999999999999999997643 3333333332 5899999999998875443211 2
Q ss_pred hhhh--hcccC-CCeEEEEecCC-------------------------------------------------cHHHHHHH
Q 009196 232 WALL--RRHSS-EDLFGVQICGA-------------------------------------------------YPDTLART 259 (540)
Q Consensus 232 ~~ll--~~~~~-e~p~~vQL~G~-------------------------------------------------~p~~~a~A 259 (540)
|+.+ ..|.. +..+++||++. -.++|++|
T Consensus 477 ~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~a 556 (765)
T PRK08255 477 WKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAA 556 (765)
T ss_pred HHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 2222 36777 58899998530 02579999
Q ss_pred HHHHHHhCCCCEEEecCC---------CCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecC-CCCC---
Q 009196 260 VELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT-GYFE--- 324 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~G---------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~-G~~e--- 324 (540)
|+++. ++|||+||||+| ||..|.+++.||++|++|.+++.+|+++|++++ ++||+|||+. +|.+
T Consensus 557 A~~a~-~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~ 635 (765)
T PRK08255 557 ARRAA-EAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGN 635 (765)
T ss_pred HHHHH-HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCC
Confidence 99997 799999999999 999999999999999999999999999999998 5799999996 3433
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEec-ccccCc---cCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 325 GKNRIDSLIADIGTWGASAVTVHG-RTRQQR---YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVHg-Rtr~q~---y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
+.+++.++++.|+++|+|+|+||+ ++..+. +......++..++++.+ ++|||++|+|++++++.+++++ ++||
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pv~~~G~i~~~~~a~~~l~~-g~~D 712 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEA--GIATIAVGAISEADHVNSIIAA-GRAD 712 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHc--CCEEEEeCCCCCHHHHHHHHHc-CCcc
Confidence 246788999999999999999994 443221 11122346778899988 7999999999999999999997 8899
Q ss_pred eeeecHHHHhCC-CchHHHHh
Q 009196 401 SCMIARGALIKP-WIFTEIKE 420 (540)
Q Consensus 401 gVMIGRgaL~nP-wif~eik~ 420 (540)
+||+||++|.|| |++..+++
T Consensus 713 ~v~~gR~~l~dP~~~~~~~~~ 733 (765)
T PRK08255 713 LCALARPHLADPAWTLHEAAE 733 (765)
T ss_pred eeeEcHHHHhCccHHHHHHHH
Confidence 999999999999 66666554
No 31
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.96 E-value=1.1e-28 Score=251.31 Aligned_cols=232 Identities=14% Similarity=0.167 Sum_probs=184.6
Q ss_pred cccCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccC--------C----------------------
Q 009196 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG--------Q---------------------- 228 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g--------~---------------------- 228 (540)
+..+++|+|++++|--....+..+-+.+...|++.+++..+...+.... .
T Consensus 2 ~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g 81 (289)
T cd02810 2 NFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLG 81 (289)
T ss_pred eECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcC
Confidence 3457999999999976665666666666678999888877665532100 0
Q ss_pred hhhh-hhh-hc-cc-CCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHH
Q 009196 229 ASEW-ALL-RR-HS-SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304 (540)
Q Consensus 229 ~~e~-~ll-~~-~~-~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~ 304 (540)
...| ..+ .. +. .+.|+++||+|++++++.++|+.+. ++|+|+||||++||... .|..++++++.+.++++
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~-~~G~d~ielN~~cP~~~-----~~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIE-RAGAKALELNLSCPNVG-----GGRQLGQDPEAVANLLK 155 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHH-HhCCCEEEEEcCCCCCC-----CCcccccCHHHHHHHHH
Confidence 0011 011 11 22 4789999999999999999999998 67999999999999853 24558899999999999
Q ss_pred HhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEeccccc----------------CccCCCc----CHHHH
Q 009196 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ----------------QRYSKLA----DWDYI 364 (540)
Q Consensus 305 av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~----------------q~y~g~a----dw~~I 364 (540)
++++.+++||+||++.+++ .++..++++.++++|+|+|++|+++.. ..+++.+ .|+++
T Consensus 156 ~vr~~~~~pv~vKl~~~~~--~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v 233 (289)
T cd02810 156 AVKAAVDIPLLVKLSPYFD--LEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWV 233 (289)
T ss_pred HHHHccCCCEEEEeCCCCC--HHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHH
Confidence 9999999999999998764 457889999999999999999987531 1223322 48899
Q ss_pred HHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC-CCchHHHHh
Q 009196 365 YQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKE 420 (540)
Q Consensus 365 ~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-Pwif~eik~ 420 (540)
+++++.++.++|||++|||.|++|+.+++. .|||+|||||+++.| ||+|.++++
T Consensus 234 ~~i~~~~~~~ipiia~GGI~~~~da~~~l~--~GAd~V~vg~a~~~~GP~~~~~i~~ 288 (289)
T cd02810 234 ARLAARLQLDIPIIGVGGIDSGEDVLEMLM--AGASAVQVATALMWDGPDVIRKIKK 288 (289)
T ss_pred HHHHHhcCCCCCEEEECCCCCHHHHHHHHH--cCccHheEcHHHHhcCccHHHHHhc
Confidence 999998854599999999999999999997 689999999999999 999999875
No 32
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.96 E-value=4.3e-28 Score=254.94 Aligned_cols=247 Identities=14% Similarity=0.138 Sum_probs=197.9
Q ss_pred CCCCcccccCcccCCcEEEccCCCCC--------CHHHHHHHHH--hCCCEEEeccceechhccCCh-----------hh
Q 009196 173 LKTHSREKKLIDFREKLYLAPLTTVG--------NLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-----------SE 231 (540)
Q Consensus 173 ~~~~p~e~~~l~lknrliLAPM~~vt--------dlpfR~l~~~--~Gadl~~TEmi~a~~l~~g~~-----------~e 231 (540)
..|.|.+++.++|+||++||||++.. +...+++.++ .|+++++||++.+.+-.++.. ..
T Consensus 5 ~LF~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~ 84 (363)
T COG1902 5 KLFEPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPG 84 (363)
T ss_pred ccCCCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHH
Confidence 48999999999999999999998743 3555555554 479999999888776543331 12
Q ss_pred hhhh--hcccCCCeEEEEecCCc----------------------------------------HHHHHHHHHHHHHhCCC
Q 009196 232 WALL--RRHSSEDLFGVQICGAY----------------------------------------PDTLARTVELIDQQCTV 269 (540)
Q Consensus 232 ~~ll--~~~~~e~p~~vQL~G~~----------------------------------------p~~~a~AA~~~~~~aG~ 269 (540)
|+.+ ..|..+.++++||++.. .++|++||+++. ++||
T Consensus 85 ~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~-~AGF 163 (363)
T COG1902 85 LKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAK-EAGF 163 (363)
T ss_pred HHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 3322 47888999999999643 157999999998 7999
Q ss_pred CEEEecCC---------CCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecCCCC-C----ChhHHHHHH
Q 009196 270 DFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGYF-E----GKNRIDSLI 333 (540)
Q Consensus 270 D~IDIN~G---------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~G~~-e----~~~~~~~la 333 (540)
|+||||.+ +|..|.++|.||++|.+|.+++.|||++|+++++ .||.+++...-. . +.+++.+++
T Consensus 164 DgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la 243 (363)
T COG1902 164 DGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELA 243 (363)
T ss_pred CEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHH
Confidence 99999976 6999999999999999999999999999999995 477776654211 1 235889999
Q ss_pred HHHHHcC-CcEEEEeccccc--C--ccC-CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 334 ADIGTWG-ASAVTVHGRTRQ--Q--RYS-KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 334 ~~leeaG-vdaItVHgRtr~--q--~y~-g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
+.|++.| +|.|++.+-... + .+. ......+...++..+ .+|||++|+|++++.+.+++++ ..||.|.+||+
T Consensus 244 ~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~-g~aDlVa~gR~ 320 (363)
T COG1902 244 KALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV--RIPVIAVGGINDPEQAEEILAS-GRADLVAMGRP 320 (363)
T ss_pred HHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHc-CCCCEEEechh
Confidence 9999999 799999765431 1 112 112345667788887 6999999999999999999996 67999999999
Q ss_pred HHhCCCchHHHHhcCC
Q 009196 408 ALIKPWIFTEIKEQRH 423 (540)
Q Consensus 408 aL~nPwif~eik~~~~ 423 (540)
+|.||.|..++++++.
T Consensus 321 ~ladP~~~~k~~~g~~ 336 (363)
T COG1902 321 FLADPDLVLKAAEGRE 336 (363)
T ss_pred hhcCccHHHHHHcCCC
Confidence 9999999999999875
No 33
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.96 E-value=1.7e-27 Score=251.05 Aligned_cols=248 Identities=11% Similarity=0.145 Sum_probs=194.5
Q ss_pred CCCcccccCcccCCcEEEccCCCC---------CCHHHHHHHHHhCCCEEEeccceechhccCChh-----------hhh
Q 009196 174 KTHSREKKLIDFREKLYLAPLTTV---------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS-----------EWA 233 (540)
Q Consensus 174 ~~~p~e~~~l~lknrliLAPM~~v---------tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~-----------e~~ 233 (540)
.|.|.++++++||||+++|||++. ++..++++.++.|+++++||.+++.+...+... .|+
T Consensus 3 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 82 (362)
T PRK10605 3 LFSPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWK 82 (362)
T ss_pred CCCCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCCCCCcccCHHHHHHHH
Confidence 689999999999999999999752 234566666667999999999998765433211 122
Q ss_pred hh--hcccCCCeEEEEecCC------------------------------------------c------------HHHHH
Q 009196 234 LL--RRHSSEDLFGVQICGA------------------------------------------Y------------PDTLA 257 (540)
Q Consensus 234 ll--~~~~~e~p~~vQL~G~------------------------------------------~------------p~~~a 257 (540)
.+ ..|..+.++++||++. . .++|+
T Consensus 83 ~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 162 (362)
T PRK10605 83 KITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFR 162 (362)
T ss_pred HHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHH
Confidence 22 4678888899998641 0 25789
Q ss_pred HHHHHHHHhCCCCEEEecCC---------CCCcccccCCccccccCCchHHHHHHHHhcccccc-cEEEEecCC-----C
Q 009196 258 RTVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTG-----Y 322 (540)
Q Consensus 258 ~AA~~~~~~aG~D~IDIN~G---------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i-PVtVKiR~G-----~ 322 (540)
+||+++. ++|||+||||++ .|..|.|+|.||++|.+|.+++.|||++|+++++- .|.+|+..- .
T Consensus 163 ~AA~rA~-~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~ 241 (362)
T PRK10605 163 QAIANAR-EAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNV 241 (362)
T ss_pred HHHHHHH-HcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccC
Confidence 9999998 799999999987 59999999999999999999999999999999843 466665421 1
Q ss_pred C--CChhH-HHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 009196 323 F--EGKNR-IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 323 ~--e~~~~-~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 399 (540)
. .+.++ +.++++.|++.|+|+|.|....... ..+....+.++|++.+ ++||+++|++ +++.+.+++++ ..|
T Consensus 242 ~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~--~~~~~~~~~~~ik~~~--~~pv~~~G~~-~~~~ae~~i~~-G~~ 315 (362)
T PRK10605 242 DNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG--GEPYSDAFREKVRARF--HGVIIGAGAY-TAEKAETLIGK-GLI 315 (362)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC--CccccHHHHHHHHHHC--CCCEEEeCCC-CHHHHHHHHHc-CCC
Confidence 1 12345 7899999999999999997532111 1122345678899988 6899999996 99999999986 779
Q ss_pred CeeeecHHHHhCCCchHHHHhcCCCCCCH
Q 009196 400 ASCMIARGALIKPWIFTEIKEQRHWDITS 428 (540)
Q Consensus 400 DgVMIGRgaL~nPwif~eik~~~~~~~s~ 428 (540)
|.|++||++|.||+|.+++++++..+++.
T Consensus 316 D~V~~gR~~iadPd~~~k~~~g~~~~~~~ 344 (362)
T PRK10605 316 DAVAFGRDYIANPDLVARLQRKAELNPQR 344 (362)
T ss_pred CEEEECHHhhhCccHHHHHhcCCCCCCCC
Confidence 99999999999999999999998776543
No 34
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.96 E-value=1.8e-27 Score=244.41 Aligned_cols=232 Identities=12% Similarity=0.122 Sum_probs=174.8
Q ss_pred cccCcccCCcEEEccCC-CCCCHHHHHHHHHhCCCEEEeccceechhccC---------------------Chhhh-hhh
Q 009196 179 EKKLIDFREKLYLAPLT-TVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG---------------------QASEW-ALL 235 (540)
Q Consensus 179 e~~~l~lknrliLAPM~-~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g---------------------~~~e~-~ll 235 (540)
+..+++|+|++++|-=. +-+-...+++.. .|++.+++..+.-.+.... ....| +.+
T Consensus 2 ~~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~-~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i 80 (294)
T cd04741 2 TPPGLTISPPLMNAAGPWCTTLEDLLELAA-SSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYI 80 (294)
T ss_pred ccCCeeCCCCCEECCCCCCCCHHHHHHHHH-cCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHH
Confidence 34589999999999644 323345666655 7888887776654432100 00111 112
Q ss_pred h-c----ccCCCeEEEEecCCcHHHHHHHHHHHHHhC--CCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcc
Q 009196 236 R-R----HSSEDLFGVQICGAYPDTLARTVELIDQQC--TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG 308 (540)
Q Consensus 236 ~-~----~~~e~p~~vQL~G~~p~~~a~AA~~~~~~a--G~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~ 308 (540)
+ . +..+.|+++||+|+ +++|.++++.+.+.. |+|+||||++||+. .| +..+..+|+.+.+|++++++
T Consensus 81 ~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~----~~-~~~~~~~~~~~~~i~~~v~~ 154 (294)
T cd04741 81 RTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNV----PG-KPPPAYDFDATLEYLTAVKA 154 (294)
T ss_pred HHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCC----CC-cccccCCHHHHHHHHHHHHH
Confidence 1 1 12468999999999 999999999987444 79999999999994 22 23577899999999999999
Q ss_pred cccccEEEEecCCCCCChhHHHHHHHHHHHc--CCcEEEE----------ec-ccc-----cCcc---CCCc----CHHH
Q 009196 309 TVDKPITIKVRTGYFEGKNRIDSLIADIGTW--GASAVTV----------HG-RTR-----QQRY---SKLA----DWDY 363 (540)
Q Consensus 309 ~v~iPVtVKiR~G~~e~~~~~~~la~~leea--GvdaItV----------Hg-Rtr-----~q~y---~g~a----dw~~ 363 (540)
.+++||+||+|.+++ ...+.+++..+.++ |+++|++ |. |++ .+.| +|++ .+.+
T Consensus 155 ~~~iPv~vKl~p~~~--~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~ 232 (294)
T cd04741 155 AYSIPVGVKTPPYTD--PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGN 232 (294)
T ss_pred hcCCCEEEEeCCCCC--HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHH
Confidence 999999999999873 34577899999888 9999995 43 222 2333 3332 3567
Q ss_pred HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh-CCCchHHHHhc
Q 009196 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 421 (540)
Q Consensus 364 I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwif~eik~~ 421 (540)
|+++++.++.++||||||||.|++|+.+++. .|||+|||||+++. +||+|.+|.++
T Consensus 233 v~~~~~~~~~~ipIig~GGI~s~~da~e~l~--aGA~~Vqv~ta~~~~gp~~~~~i~~~ 289 (294)
T cd04741 233 VRTFRRLLPSEIQIIGVGGVLDGRGAFRMRL--AGASAVQVGTALGKEGPKVFARIEKE 289 (294)
T ss_pred HHHHHHhcCCCCCEEEeCCCCCHHHHHHHHH--cCCCceeEchhhhhcCchHHHHHHHH
Confidence 7888888854599999999999999999997 79999999999996 99999999763
No 35
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.95 E-value=5.3e-28 Score=252.98 Aligned_cols=246 Identities=17% Similarity=0.162 Sum_probs=182.6
Q ss_pred CCCcccccCcccCCcEEEccCCCCC--------C-HHHHHHHH--HhCCCEEEeccceechhccCChh-----------h
Q 009196 174 KTHSREKKLIDFREKLYLAPLTTVG--------N-LPFRRVCK--VLGADVTCGEMAMCTNLLQGQAS-----------E 231 (540)
Q Consensus 174 ~~~p~e~~~l~lknrliLAPM~~vt--------d-lpfR~l~~--~~Gadl~~TEmi~a~~l~~g~~~-----------e 231 (540)
.|.|.++++++|+||+++|||++.. + ...+++.+ +.|+++++||.+.+.+...+... .
T Consensus 2 LF~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~ 81 (341)
T PF00724_consen 2 LFSPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPG 81 (341)
T ss_dssp GGS-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHH
T ss_pred CCCCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHH
Confidence 5889999999999999999998632 2 33344443 36899999999999886553321 1
Q ss_pred hhhh--hcccCCCeEEEEecCCc-------------------------------------------HHHHHHHHHHHHHh
Q 009196 232 WALL--RRHSSEDLFGVQICGAY-------------------------------------------PDTLARTVELIDQQ 266 (540)
Q Consensus 232 ~~ll--~~~~~e~p~~vQL~G~~-------------------------------------------p~~~a~AA~~~~~~ 266 (540)
|+.+ ..|..+.++++||++.. .++|++||+++. +
T Consensus 82 ~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~-~ 160 (341)
T PF00724_consen 82 LKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAK-E 160 (341)
T ss_dssp HHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHH-H
Confidence 2222 46888999999999421 257999999998 7
Q ss_pred CCCCEEEecCC---------CCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCC-C---ChhHHHH
Q 009196 267 CTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYF-E---GKNRIDS 331 (540)
Q Consensus 267 aG~D~IDIN~G---------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~-e---~~~~~~~ 331 (540)
||||+||||++ +|..|.|+|.||+++.+|.+++.+||++|++++ +.||.+|+...-. + +.++..+
T Consensus 161 AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~ 240 (341)
T PF00724_consen 161 AGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIE 240 (341)
T ss_dssp TT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHH
T ss_pred hccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHH
Confidence 99999999987 599999999999999999999999999999998 5677776654211 1 1246678
Q ss_pred HHHHHHHcCCcEEEEeccc----ccCcc------CCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCe
Q 009196 332 LIADIGTWGASAVTVHGRT----RQQRY------SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 401 (540)
Q Consensus 332 la~~leeaGvdaItVHgRt----r~q~y------~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDg 401 (540)
+++.+++.|++.+.++... ..... ......+++..+++.+ ++|||++|+|.+++.+.+++++ ..||.
T Consensus 241 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~-g~~Dl 317 (341)
T PF00724_consen 241 IAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEE-GKADL 317 (341)
T ss_dssp HHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHT-TSTSE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc--CceEEEEeeecchhhhHHHHhc-CCceE
Confidence 8999999999988654321 01111 1112346788899988 7999999999999999999997 88999
Q ss_pred eeecHHHHhCCCchHHHHhcCC
Q 009196 402 CMIARGALIKPWIFTEIKEQRH 423 (540)
Q Consensus 402 VMIGRgaL~nPwif~eik~~~~ 423 (540)
|++||++|.||.|.+++++++.
T Consensus 318 V~~gR~~ladPd~~~k~~~g~~ 339 (341)
T PF00724_consen 318 VAMGRPLLADPDLPNKAREGRE 339 (341)
T ss_dssp EEESHHHHH-TTHHHHHHHTTG
T ss_pred eeccHHHHhCchHHHHHHcCCc
Confidence 9999999999999999999874
No 36
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.95 E-value=1.8e-26 Score=240.20 Aligned_cols=232 Identities=14% Similarity=0.134 Sum_probs=179.9
Q ss_pred cccccCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhc-c------------C--------C--hhhh-
Q 009196 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL-Q------------G--------Q--ASEW- 232 (540)
Q Consensus 177 p~e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~-~------------g--------~--~~e~- 232 (540)
..+..++.|+|++++|-=.+-+....+++. ..|++.+++..+...+-. + + + ...|
T Consensus 40 ~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~ 118 (327)
T cd04738 40 EVEVFGLTFPNPVGLAAGFDKNAEAIDALL-ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVA 118 (327)
T ss_pred ceEECCEECCCCCEeCcCCCCCHHHHHHHH-HCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHH
Confidence 457889999999998853332223456655 679998887776654211 0 0 0 0011
Q ss_pred hhhhcc-cCCCeEEEEecCCc-------HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHH
Q 009196 233 ALLRRH-SSEDLFGVQICGAY-------PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304 (540)
Q Consensus 233 ~ll~~~-~~e~p~~vQL~G~~-------p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~ 304 (540)
..++.. ..+.|+++||+|++ .++|+++++.+. . ++|+||||++||... |...+++++.+.++++
T Consensus 119 ~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~-~-~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~ 190 (327)
T cd04738 119 KRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLG-P-YADYLVVNVSSPNTP------GLRDLQGKEALRELLT 190 (327)
T ss_pred HHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHH-h-hCCEEEEECCCCCCC------ccccccCHHHHHHHHH
Confidence 122222 24689999999987 688999998876 3 589999999999842 3445789999999999
Q ss_pred Hhccccc-----ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc-------------cCccCCCcC----HH
Q 009196 305 ATSGTVD-----KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-------------QQRYSKLAD----WD 362 (540)
Q Consensus 305 av~~~v~-----iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr-------------~q~y~g~ad----w~ 362 (540)
+|++.++ +||+||++.++. .+++.++++.++++|+|+|++|+|+. .++|+|++. |+
T Consensus 191 av~~~~~~~~~~~Pv~vKl~~~~~--~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~ 268 (327)
T cd04738 191 AVKEERNKLGKKVPLLVKIAPDLS--DEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTE 268 (327)
T ss_pred HHHHHHhhcccCCCeEEEeCCCCC--HHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHH
Confidence 9999886 999999998764 35688999999999999999999864 235666654 88
Q ss_pred HHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC-CCchHHHHhc
Q 009196 363 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 421 (540)
Q Consensus 363 ~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-Pwif~eik~~ 421 (540)
+++++++.++.++|||++|||.|++|+.+++. .|||+|||||+++.+ ||+|.+|+++
T Consensus 269 ~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~--aGAd~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 269 VLRELYKLTGGKIPIIGVGGISSGEDAYEKIR--AGASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH--cCCCHHhccHHHHhhCcHHHHHHHhc
Confidence 99999998854699999999999999999997 799999999999886 9999999763
No 37
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.94 E-value=6.5e-26 Score=237.59 Aligned_cols=232 Identities=15% Similarity=0.115 Sum_probs=179.2
Q ss_pred cccccCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhc-cC--------------------Ch--hhh-
Q 009196 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL-QG--------------------QA--SEW- 232 (540)
Q Consensus 177 p~e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~-~g--------------------~~--~e~- 232 (540)
..+..+++|+|++++|-=.+-.-..+|+ +...|++.+++..+...+-. +. +. ..|
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~~~~~~~~~~-~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~ 128 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGFDKNGEAIDA-LGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALA 128 (344)
T ss_pred ceEECCEECCCCCEECCCCCCChHHHHH-HHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHH
Confidence 4577899999999987522222244555 44689998887776654211 00 00 011
Q ss_pred hhhhcccCCCeEEEEecCC-------cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHH
Q 009196 233 ALLRRHSSEDLFGVQICGA-------YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305 (540)
Q Consensus 233 ~ll~~~~~e~p~~vQL~G~-------~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~a 305 (540)
..+.......|++++|+|+ ..++|++.++.+. . ++|+||||++||... |...+++++.+.+|+++
T Consensus 129 ~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~-~-~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~a 200 (344)
T PRK05286 129 ERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLY-P-YADYFTVNISSPNTP------GLRDLQYGEALDELLAA 200 (344)
T ss_pred HHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHH-h-hCCEEEEEccCCCCC------CcccccCHHHHHHHHHH
Confidence 1122211457899999986 5789999999886 3 699999999999854 23347899999999999
Q ss_pred hccccc-----ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc-------------cCccCCCc----CHHH
Q 009196 306 TSGTVD-----KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-------------QQRYSKLA----DWDY 363 (540)
Q Consensus 306 v~~~v~-----iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr-------------~q~y~g~a----dw~~ 363 (540)
|+++++ +||+||++.+++ .+++.++++.++++|+|+|++|+|+. .++|+|++ .|++
T Consensus 201 Vr~~~~~~~~~~PV~vKlsp~~~--~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~ 278 (344)
T PRK05286 201 LKEAQAELHGYVPLLVKIAPDLS--DEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEV 278 (344)
T ss_pred HHHHHhccccCCceEEEeCCCCC--HHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHH
Confidence 999987 999999998754 35688999999999999999999873 23566654 6899
Q ss_pred HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC-CCchHHHHhc
Q 009196 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 421 (540)
Q Consensus 364 I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-Pwif~eik~~ 421 (540)
++++++.++.++|||++|||.|++|+.+++. .|||+|||||+++.+ ||+|.+|+++
T Consensus 279 v~~l~~~~~~~ipIig~GGI~s~eda~e~l~--aGAd~V~v~~~~~~~gP~~~~~i~~~ 335 (344)
T PRK05286 279 IRRLYKELGGRLPIIGVGGIDSAEDAYEKIR--AGASLVQIYSGLIYEGPGLVKEIVRG 335 (344)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHH--cCCCHHHHHHHHHHhCchHHHHHHHH
Confidence 9999998855699999999999999999997 799999999999885 9999999763
No 38
>PLN02411 12-oxophytodienoate reductase
Probab=99.94 E-value=1.1e-25 Score=239.40 Aligned_cols=250 Identities=10% Similarity=0.031 Sum_probs=188.8
Q ss_pred CCCCCcccccCcccCCcEEEccCCCC-------CCHHHHHHHHHh-CCCEEEeccceechhccCChh-----------hh
Q 009196 172 SLKTHSREKKLIDFREKLYLAPLTTV-------GNLPFRRVCKVL-GADVTCGEMAMCTNLLQGQAS-----------EW 232 (540)
Q Consensus 172 ~~~~~p~e~~~l~lknrliLAPM~~v-------tdlpfR~l~~~~-Gadl~~TEmi~a~~l~~g~~~-----------e~ 232 (540)
...|.|.++++++|+||++||||++. ++....++.++. |.++++||.+.+.+-..+... .|
T Consensus 10 ~~Lf~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~ 89 (391)
T PLN02411 10 ETLFSPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEAW 89 (391)
T ss_pred hhcCCCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHHHHH
Confidence 45899999999999999999999763 344444444432 339999999998875443221 23
Q ss_pred hhh--hcccCCCeEEEEecCC----------------------------------------c------------HHHHHH
Q 009196 233 ALL--RRHSSEDLFGVQICGA----------------------------------------Y------------PDTLAR 258 (540)
Q Consensus 233 ~ll--~~~~~e~p~~vQL~G~----------------------------------------~------------p~~~a~ 258 (540)
+.+ ..|..+.++++||++. . .++|++
T Consensus 90 ~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~ 169 (391)
T PLN02411 90 KKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQ 169 (391)
T ss_pred HHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 322 4678888889998520 0 157899
Q ss_pred HHHHHHHhCCCCEEEecCC---------CCCcccccCCccccccCCchHHHHHHHHhcccccc-cEEEEecCCC------
Q 009196 259 TVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGY------ 322 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~G---------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i-PVtVKiR~G~------ 322 (540)
||+++. ++|||+||||++ +|..|.|+|.||++|.+|.+++.+||++|+++++- .|.||+...-
T Consensus 170 AA~rA~-~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~ 248 (391)
T PLN02411 170 AALNAI-RAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDAT 248 (391)
T ss_pred HHHHHH-HcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCC
Confidence 999998 799999999987 59999999999999999999999999999999843 4666665311
Q ss_pred -CCChhHHHHHHHHHHHc------CCcEEEEecccccC-------ccCCCcCH-HHHHHHHHHcCCCceEEEeCCCCCHH
Q 009196 323 -FEGKNRIDSLIADIGTW------GASAVTVHGRTRQQ-------RYSKLADW-DYIYQCARKASDDLQVLGNGDIYSYL 387 (540)
Q Consensus 323 -~e~~~~~~~la~~leea------GvdaItVHgRtr~q-------~y~g~adw-~~I~~i~~~~~~~IPVIgNGdI~s~e 387 (540)
.+..++...+++.|+.. |+|+|+|....... .+.....+ .+.++|++.+ ++|||++|+| +.+
T Consensus 249 ~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~ 325 (391)
T PLN02411 249 DSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY--QGTFMCSGGF-TRE 325 (391)
T ss_pred CCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc--CCCEEEECCC-CHH
Confidence 11134567788888763 59999998643211 01011122 4568899988 7999999999 679
Q ss_pred HHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCC
Q 009196 388 DWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDI 426 (540)
Q Consensus 388 Da~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~ 426 (540)
++.+++++ ..||.|.+||++|.||.|.+++++++.+.+
T Consensus 326 ~a~~~l~~-g~aDlV~~gR~~iadPdl~~k~~~g~~l~~ 363 (391)
T PLN02411 326 LGMQAVQQ-GDADLVSYGRLFISNPDLVLRFKLNAPLNK 363 (391)
T ss_pred HHHHHHHc-CCCCEEEECHHHHhCccHHHHHhcCCCCCC
Confidence 99999986 679999999999999999999999988743
No 39
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.93 E-value=5.2e-25 Score=229.17 Aligned_cols=227 Identities=16% Similarity=0.157 Sum_probs=173.4
Q ss_pred cccCcccCCcEEEc--cCCCCCCHHHHHHHHHhCCCEEEeccceechhcc-CCh--------------------------
Q 009196 179 EKKLIDFREKLYLA--PLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQ-GQA-------------------------- 229 (540)
Q Consensus 179 e~~~l~lknrliLA--PM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~-g~~-------------------------- 229 (540)
+..++.|+||+++| |++... ..+++ +...|++.++|..+...++.+ |++
T Consensus 5 ~~~Gl~l~nPv~~ASg~~~~~~-e~~~~-~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~ 82 (325)
T cd04739 5 TYLGLSLKNPLVASASPLSRNL-DNIRR-LEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNL 82 (325)
T ss_pred EECCEecCCCCEeCCcCCCCCH-HHHHH-HHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCc
Confidence 56689999999996 665432 33455 456788888777766543111 000
Q ss_pred --hhh-hhhhc--ccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHH
Q 009196 230 --SEW-ALLRR--HSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304 (540)
Q Consensus 230 --~e~-~ll~~--~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~ 304 (540)
..| ..+.. ...+.|+++||+|+++++|.++|+.++ ++|+|+||||++||.. ..+.+|+.+ ++.+.++++
T Consensus 83 g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~-~~gad~iElN~s~~~~--~~~~~g~~~---~~~~~eiv~ 156 (325)
T cd04739 83 GPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIE-EAGADALELNIYALPT--DPDISGAEV---EQRYLDILR 156 (325)
T ss_pred CHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCC--CCCcccchH---HHHHHHHHH
Confidence 001 01111 122679999999999999999999997 6899999999999642 124456544 578999999
Q ss_pred HhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEeccccc-------------CccCCCc----CHHHHHHH
Q 009196 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ-------------QRYSKLA----DWDYIYQC 367 (540)
Q Consensus 305 av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~-------------q~y~g~a----dw~~I~~i 367 (540)
++++++++||+||++..+. +..++++.++++|+++|++|+|+.. ..++|++ .|++++++
T Consensus 157 ~v~~~~~iPv~vKl~p~~~----~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v 232 (325)
T cd04739 157 AVKSAVTIPVAVKLSPFFS----ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAIL 232 (325)
T ss_pred HHHhccCCCEEEEcCCCcc----CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHH
Confidence 9999999999999997542 5788999999999999999998621 2234444 36788999
Q ss_pred HHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC-CCchHHHHhc
Q 009196 368 ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 421 (540)
Q Consensus 368 ~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-Pwif~eik~~ 421 (540)
++.+ ++||||+|||.|++|+.+++. .|||+|||||+++.+ |.++.+|.++
T Consensus 233 ~~~~--~ipIig~GGI~s~~Da~e~l~--aGA~~Vqv~ta~~~~gp~~~~~i~~~ 283 (325)
T cd04739 233 SGRV--KASLAASGGVHDAEDVVKYLL--AGADVVMTTSALLRHGPDYIGTLLAG 283 (325)
T ss_pred Hccc--CCCEEEECCCCCHHHHHHHHH--cCCCeeEEehhhhhcCchHHHHHHHH
Confidence 8887 799999999999999999997 899999999999995 9999998763
No 40
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.92 E-value=4.6e-24 Score=219.52 Aligned_cols=228 Identities=13% Similarity=0.069 Sum_probs=181.4
Q ss_pred cccCcccCCcEEEccCCCCC------CHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCC-
Q 009196 179 EKKLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA- 251 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~vt------dlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~- 251 (540)
++-+..|..|+++|||++.+ +..+++.|.++|+.+++++|... +...++. ..+.|+++||++.
T Consensus 57 ~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~---------~~~~i~~-~~~~~~~~ql~~~~ 126 (299)
T cd02809 57 TLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT---------SLEEVAA-AAPGPRWFQLYVPR 126 (299)
T ss_pred EECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC---------CHHHHHH-hcCCCeEEEEeecC
Confidence 45567888999999997764 57999999999999999987732 1222221 1237999999987
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDS 331 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~ 331 (540)
+++.+.++++.+. +.|+|+|+||++||....+ ...++++.+++.+++||+||.... .+
T Consensus 127 ~~~~~~~~i~~~~-~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v~s--------~~ 184 (299)
T cd02809 127 DREITEDLLRRAE-AAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGILT--------PE 184 (299)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeecCC--------HH
Confidence 8999999998887 6799999999999985322 234678888888889999997642 35
Q ss_pred HHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 332 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 332 la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
.++.+.++|+++|+||++...+.+.+++.|..+.++++.++.++|||++|||.+..|+.+++. .|||+|||||
T Consensus 185 ~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~--lGAd~V~ig~----- 257 (299)
T cd02809 185 DALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA--LGADAVLIGR----- 257 (299)
T ss_pred HHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH--cCCCEEEEcH-----
Confidence 688999999999999888777888889999999999998743599999999999999999997 7999999999
Q ss_pred CCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 009196 412 PWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 448 (540)
Q Consensus 412 Pwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~ 448 (540)
||++..+..+.. ...+.++.++++++..+...|.
T Consensus 258 ~~l~~~~~~g~~---~v~~~i~~l~~el~~~m~~~G~ 291 (299)
T cd02809 258 PFLYGLAAGGEA---GVAHVLEILRDELERAMALLGC 291 (299)
T ss_pred HHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHCC
Confidence 556655443321 2345677788888888887774
No 41
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.92 E-value=1.1e-23 Score=219.94 Aligned_cols=228 Identities=16% Similarity=0.154 Sum_probs=171.6
Q ss_pred ccccCcccCCcEEEc--cCCCCCCHHHHHHHHHhCCCEEEeccceechhcc---------C-------------------
Q 009196 178 REKKLIDFREKLYLA--PLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQ---------G------------------- 227 (540)
Q Consensus 178 ~e~~~l~lknrliLA--PM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~---------g------------------- 227 (540)
.+..++.|+|++++| |+++ +...+++ +...|++.++|..+.-.+... +
T Consensus 5 ~~~~Gl~l~nPv~~asg~~~~-~~~~~~~-~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl~ 82 (334)
T PRK07565 5 TTYLGLTLRNPLVASASPLSE-SVDNVKR-LEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAKF 82 (334)
T ss_pred EEECCEecCCCCEecCcCCCC-CHHHHHH-HHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhcc
Confidence 356789999999877 4443 3344555 445788887777665332100 0
Q ss_pred --Chhhhh-hhh--cccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHH
Q 009196 228 --QASEWA-LLR--RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302 (540)
Q Consensus 228 --~~~e~~-ll~--~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eI 302 (540)
...+|. .+. ....+.|+++||+|.+++++.++|+.++ ++|+|+||||++||.... +..|.. .++.+.++
T Consensus 83 n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~-~agad~ielN~scpp~~~--~~~g~~---~~~~~~ei 156 (334)
T PRK07565 83 YVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIE-QAGADALELNIYYLPTDP--DISGAE---VEQRYLDI 156 (334)
T ss_pred CcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHH-HcCCCEEEEeCCCCCCCC--CCcccc---HHHHHHHH
Confidence 001111 111 1223579999999999999999999997 689999999999976432 333432 34668899
Q ss_pred HHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEeccccc-------------CccCCCc----CHHHHH
Q 009196 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ-------------QRYSKLA----DWDYIY 365 (540)
Q Consensus 303 v~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~-------------q~y~g~a----dw~~I~ 365 (540)
++++++.+++||+||++.++. +..++++.++++|+|+|++|+|+.. .++++++ .|++++
T Consensus 157 l~~v~~~~~iPV~vKl~p~~~----~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~ 232 (334)
T PRK07565 157 LRAVKSAVSIPVAVKLSPYFS----NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIA 232 (334)
T ss_pred HHHHHhccCCcEEEEeCCCch----hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHH
Confidence 999999999999999998652 4678999999999999999998632 1244444 267888
Q ss_pred HHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC-CCchHHHHhc
Q 009196 366 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 421 (540)
Q Consensus 366 ~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-Pwif~eik~~ 421 (540)
++++.+ ++||||+|||+|++|+.+++. .|||+|||||+++.+ |.++.+|.++
T Consensus 233 ~~~~~~--~ipIig~GGI~s~~Da~e~l~--aGA~~V~v~t~~~~~g~~~~~~i~~~ 285 (334)
T PRK07565 233 ILSGRV--GADLAATTGVHDAEDVIKMLL--AGADVVMIASALLRHGPDYIGTILRG 285 (334)
T ss_pred HHHhhc--CCCEEEECCCCCHHHHHHHHH--cCCCceeeehHHhhhCcHHHHHHHHH
Confidence 898888 799999999999999999996 899999999999995 9999888764
No 42
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.88 E-value=3.5e-22 Score=210.52 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=154.0
Q ss_pred ccccCcccCCcEEEccCCCCCCHHHHHHHHHhCC-CEEEeccceechhccCChhhhhhhhcccCCCeEEEEecC--CcHH
Q 009196 178 REKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG--AYPD 254 (540)
Q Consensus 178 ~e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Ga-dl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G--~~p~ 254 (540)
..++.+.|++++++|||.+++|.+||.+|+++|+ ++ ++++.|.+.+.. ..++.+||+| ++++
T Consensus 36 ~~i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~~----------~~~~~~QI~g~~~~~~ 100 (369)
T TIGR01304 36 WQIDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHED----------PDPAIAKIAEAYEEGD 100 (369)
T ss_pred eEEcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCCC----------HHHHHHHHhhcCCChH
Confidence 3567889999999999999999999999999998 77 566666554332 3344599999 6677
Q ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHH
Q 009196 255 TLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 334 (540)
Q Consensus 255 ~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~ 334 (540)
. ++|+++++ +.+++. .+|+++.+++++++++. ||||+|++. ..+.++++
T Consensus 101 ~-a~aa~~~~-e~~~~~----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~----~~~~e~a~ 149 (369)
T TIGR01304 101 Q-AAATRLLQ-ELHAAP----------------------LKPELLGERIAEVRDSG---VITAVRVSP----QNAREIAP 149 (369)
T ss_pred H-HHHHHHHH-HcCCCc----------------------cChHHHHHHHHHHHhcc---eEEEEecCC----cCHHHHHH
Confidence 7 89999887 566665 37999999999999973 999999953 36789999
Q ss_pred HHHHcCCcEEEEecccccCcc-CCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 335 DIGTWGASAVTVHGRTRQQRY-SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 335 ~leeaGvdaItVHgRtr~q~y-~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
.+.++|+++|++|+|++.|.| ++.++|..+.++.+.+ ++|||+ |+|.|++++.+++. +|||+||+||+...
T Consensus 150 ~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~-G~V~t~e~A~~~~~--aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 150 IVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIA-GGVNDYTTALHLMR--TGAAGVIVGPGGAN 221 (369)
T ss_pred HHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHH--cCCCEEEECCCCCc
Confidence 999999999999999999999 6668899999999888 799998 99999999999886 89999999997743
No 43
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.88 E-value=2.9e-21 Score=204.63 Aligned_cols=235 Identities=12% Similarity=0.124 Sum_probs=174.5
Q ss_pred ccccCcccCCcEEEccCCCCCCHHH-HHHHHHhCCCEEEeccceechh--c---------c---------C-----C---
Q 009196 178 REKKLIDFREKLYLAPLTTVGNLPF-RRVCKVLGADVTCGEMAMCTNL--L---------Q---------G-----Q--- 228 (540)
Q Consensus 178 ~e~~~l~lknrliLAPM~~vtdlpf-R~l~~~~Gadl~~TEmi~a~~l--~---------~---------g-----~--- 228 (540)
.+..++.|+|++++|-=.-..+... +++.. .|++.++|..+...+- . . . +
T Consensus 13 t~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~-~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~~~ 91 (385)
T PLN02495 13 VTVNGLKMPNPFVIGSGPPGTNYTVMKRAFD-EGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIEL 91 (385)
T ss_pred EEECCEEcCCCcEeCCccCCCCHHHHHHHHh-cCCeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCccc
Confidence 4667899999999994333344444 55554 4888887765543220 0 0 0 0
Q ss_pred -----hhhh-hhh---hcccCCCeEEEEecC-CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchH
Q 009196 229 -----ASEW-ALL---RRHSSEDLFGVQICG-AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMR 298 (540)
Q Consensus 229 -----~~e~-~ll---~~~~~e~p~~vQL~G-~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~ 298 (540)
...| ..+ +..-...|++++|+| .++++|.+.|++++ ++|+|+||||++||+.... .+.|.++.++|+.
T Consensus 92 ~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e-~~GaD~iELNiSCPn~~~~-r~~g~~~gq~~e~ 169 (385)
T PLN02495 92 ISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVE-ETGVDALEINFSCPHGMPE-RKMGAAVGQDCDL 169 (385)
T ss_pred ccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHH-hcCCCEEEEECCCCCCCCc-CccchhhccCHHH
Confidence 0111 111 111124699999987 89999999999997 6899999999999996433 3568899999999
Q ss_pred HHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEeccccc---------------------CccCC
Q 009196 299 MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ---------------------QRYSK 357 (540)
Q Consensus 299 l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~---------------------q~y~g 357 (540)
+.+|++++++.+++||.||+...+ .++..+++.+.++|+++|++.+++.. ++++|
T Consensus 170 ~~~i~~~Vk~~~~iPv~vKLsPn~----t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG 245 (385)
T PLN02495 170 LEEVCGWINAKATVPVWAKMTPNI----TDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSS 245 (385)
T ss_pred HHHHHHHHHHhhcCceEEEeCCCh----hhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccc
Confidence 999999999999999999999754 34788999999999999998765421 12333
Q ss_pred Cc-C---HHHHHHHHHHcC----CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC-CCchHHHHhc
Q 009196 358 LA-D---WDYIYQCARKAS----DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 421 (540)
Q Consensus 358 ~a-d---w~~I~~i~~~~~----~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-Pwif~eik~~ 421 (540)
++ . +..+.++++.+. .++||||.|||.|++|+.+++. .||+.|+|+.+++.+ |.++.+|.++
T Consensus 246 ~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~--aGAs~VQv~Ta~~~~Gp~vi~~i~~~ 316 (385)
T PLN02495 246 KAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFIL--LGADTVQVCTGVMMHGYPLVKNLCAE 316 (385)
T ss_pred hhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHH--hCCCceeEeeeeeecCcHHHHHHHHH
Confidence 32 1 234455555542 1499999999999999999997 799999999999999 9999998753
No 44
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.86 E-value=1.6e-20 Score=194.36 Aligned_cols=232 Identities=12% Similarity=0.129 Sum_probs=169.5
Q ss_pred ccccCcccCCcEEEccCCCC-CCHHHHHHHHHhCCCEEEeccceechhccCCh----------------------hhh-h
Q 009196 178 REKKLIDFREKLYLAPLTTV-GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQA----------------------SEW-A 233 (540)
Q Consensus 178 ~e~~~l~lknrliLAPM~~v-tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~----------------------~e~-~ 233 (540)
.+..+++|+|++++|-=... +...+|+ +...|++.+++..+..++-. |+. ..| +
T Consensus 4 ~~~~Gl~l~NPv~~AsG~~~~~~e~~~~-~~~~g~Gavv~ktit~~p~~-gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~ 81 (310)
T PRK02506 4 TQIAGFKFDNCLMNAAGVYCMTKEELEE-VEASAAGAFVTKSATLEPRP-GNPEPRYADTPLGSINSMGLPNLGFDYYLD 81 (310)
T ss_pred eEECCEECCCCCEeCCCCCCCCHHHHHH-HHHcCCcEEEeCccCCCCCC-CCCCCeEEECcchhhccCCCCCcCHHHHHH
Confidence 36678999999999954332 3345665 44678888887776655321 110 111 1
Q ss_pred hh---hcccCCCeEEEEecCCcHHHHHHHHHHHHHhCC-CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccc
Q 009196 234 LL---RRHSSEDLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT 309 (540)
Q Consensus 234 ll---~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG-~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~ 309 (540)
.+ +....+.|++++|.|.++++|.+.|+.++ .+| +|+||||++||+.. + |..+-.+++.+.+|++++++.
T Consensus 82 ~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~-~~g~ad~iElN~ScPn~~----~-~~~~g~d~~~~~~i~~~v~~~ 155 (310)
T PRK02506 82 YVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQ-ASDFNGLVELNLSCPNVP----G-KPQIAYDFETTEQILEEVFTY 155 (310)
T ss_pred HHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHh-hcCCCCEEEEECCCCCCC----C-ccccccCHHHHHHHHHHHHHh
Confidence 11 11223589999999999999999999987 677 89999999999832 2 455667899999999999999
Q ss_pred ccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecc-------------cc------cCccCCCc----CHHHHHH
Q 009196 310 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR-------------TR------QQRYSKLA----DWDYIYQ 366 (540)
Q Consensus 310 v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgR-------------tr------~q~y~g~a----dw~~I~~ 366 (540)
+.+||.||++...+ .....+.+..+.+.|+++|+...+ .. .++++|++ -..++++
T Consensus 156 ~~~Pv~vKlsp~~~--~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~ 233 (310)
T PRK02506 156 FTKPLGVKLPPYFD--IVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRA 233 (310)
T ss_pred cCCccEEecCCCCC--HHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHH
Confidence 99999999998652 234444444455667777644331 11 12345554 3677888
Q ss_pred HHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh-CCCchHHHHhc
Q 009196 367 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 421 (540)
Q Consensus 367 i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwif~eik~~ 421 (540)
+++.++.++||||+|||.|++|+.+++. .|||+|||+.+++. +|.+|.+|.++
T Consensus 234 ~~~~~~~~ipIig~GGI~s~~da~e~i~--aGA~~Vqv~ta~~~~gp~~~~~i~~~ 287 (310)
T PRK02506 234 FYQRLNPSIQIIGTGGVKTGRDAFEHIL--CGASMVQVGTALHKEGPAVFERLTKE 287 (310)
T ss_pred HHHhcCCCCCEEEECCCCCHHHHHHHHH--cCCCHHhhhHHHHHhChHHHHHHHHH
Confidence 8888754699999999999999999997 89999999999998 79999998753
No 45
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.85 E-value=3e-20 Score=194.27 Aligned_cols=232 Identities=15% Similarity=0.149 Sum_probs=175.5
Q ss_pred cccccCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccC---------------------Ch--hhh-
Q 009196 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG---------------------QA--SEW- 232 (540)
Q Consensus 177 p~e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g---------------------~~--~e~- 232 (540)
..+..++.|+|++++|-=.+-+....+.+. ..|++.+++..+...+-... +. ..|
T Consensus 47 ~~~~~Gl~l~NPi~lAsG~~~~~~~~~~~~-~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l 125 (335)
T TIGR01036 47 EVTVLGLKFPNPLGLAAGFDKDGEAIDALG-AMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLV 125 (335)
T ss_pred cEEECCEECCCCcEeCCccCCCHHHHHHHH-hcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHH
Confidence 457789999999999743332223455554 46999888777665421100 00 011
Q ss_pred hhhhcccCCCeEEEEecCC-------cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHH
Q 009196 233 ALLRRHSSEDLFGVQICGA-------YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 305 (540)
Q Consensus 233 ~ll~~~~~e~p~~vQL~G~-------~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~a 305 (540)
+.++.+....|++++|.++ ..++|++.++.+.+ .+|+||||.+||... |...+.+++.+.+++++
T Consensus 126 ~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~--~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~ 197 (335)
T TIGR01036 126 ERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP--LADYLVVNVSSPNTP------GLRDLQYKAELRDLLTA 197 (335)
T ss_pred HHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh--hCCEEEEEccCCCCC------CcccccCHHHHHHHHHH
Confidence 1222344567899999877 57899999998863 489999999999842 34456889999999999
Q ss_pred hccccc-------ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc-------------cCccCCCc----CH
Q 009196 306 TSGTVD-------KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-------------QQRYSKLA----DW 361 (540)
Q Consensus 306 v~~~v~-------iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr-------------~q~y~g~a----dw 361 (540)
|++.++ +||.||+...++ .+++.++++.++++|+++|++.+++. .++++|++ -.
T Consensus 198 V~~~~~~~~~~~~~Pv~vKLsP~~~--~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al 275 (335)
T TIGR01036 198 VKQEQDGLRRVHRVPVLVKIAPDLT--ESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKST 275 (335)
T ss_pred HHHHHHhhhhccCCceEEEeCCCCC--HHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHH
Confidence 998876 999999998653 34788999999999999999987542 23455554 35
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh-CCCchHHHHhc
Q 009196 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 421 (540)
Q Consensus 362 ~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwif~eik~~ 421 (540)
.+++++++.++.++||||+|||.+++|+.+++. .|||.|+||++++. +|+++.+|+++
T Consensus 276 ~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~--aGA~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 276 EIIRRLYAELQGRLPIIGVGGISSAQDALEKIR--AGASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH--cCCcHHHhhHHHHHhCchHHHHHHhh
Confidence 778888888765699999999999999999997 79999999999988 59999999763
No 46
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.85 E-value=6.4e-20 Score=188.77 Aligned_cols=230 Identities=18% Similarity=0.224 Sum_probs=178.0
Q ss_pred cccCcccCCcEEEccCCCC-CCHHHHHHHHHhCCCEEEeccceechhccCC---------------------hhhhhhh-
Q 009196 179 EKKLIDFREKLYLAPLTTV-GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ---------------------ASEWALL- 235 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~v-tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~---------------------~~e~~ll- 235 (540)
++-+++|+|+++||-=... .-..++.++. .|++.+.+-.+...+..-.. .....++
T Consensus 5 ~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~~-~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~~ 83 (310)
T COG0167 5 EILGLKFPNPLGLAAGFDGKNGEELDALAA-LGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFLE 83 (310)
T ss_pred eecceecCCCCeEcccCCccCHHHHHHHHh-cCCceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHHH
Confidence 4678999999999764443 2344455554 56887777666555321100 0001111
Q ss_pred --h-cc----cCCCeEEEEecCCcHHHHHHHHHHHHHhCC-CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhc
Q 009196 236 --R-RH----SSEDLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 307 (540)
Q Consensus 236 --~-~~----~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG-~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~ 307 (540)
. .+ +.+.+++....+...+.|...+..++ +++ +|.|+||.+||+. .| |..|.++++.+.+++++++
T Consensus 84 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~-~~~~ad~ielNiScPnt----~g-~~~l~~~~e~l~~l~~~vk 157 (310)
T COG0167 84 ELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLE-EAGDADAIELNISCPNT----PG-GRALGQDPELLEKLLEAVK 157 (310)
T ss_pred HHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHH-hcCCCCEEEEEccCCCC----CC-hhhhccCHHHHHHHHHHHH
Confidence 1 11 12345788888999999999999987 667 8999999999993 34 8888889999999999999
Q ss_pred ccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc-----------------cCccCCCc----CHHHHHH
Q 009196 308 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-----------------QQRYSKLA----DWDYIYQ 366 (540)
Q Consensus 308 ~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr-----------------~q~y~g~a----dw~~I~~ 366 (540)
+.+.+||.||+.. +..++.++|+.+.++|+|+|++.+-+. .++++|++ ...+|++
T Consensus 158 ~~~~~Pv~vKl~P----~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~ 233 (310)
T COG0167 158 AATKVPVFVKLAP----NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAE 233 (310)
T ss_pred hcccCceEEEeCC----CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHH
Confidence 9999999999998 346889999999999999999876332 23456655 3678899
Q ss_pred HHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC-CCchHHHHhc
Q 009196 367 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 421 (540)
Q Consensus 367 i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-Pwif~eik~~ 421 (540)
+++.+..++||||.|||.|++||.+++. .||+.|+|+.+++.+ |++|.+|.++
T Consensus 234 l~~~~~~~ipIIGvGGI~s~~DA~E~i~--aGA~~vQv~Tal~~~Gp~i~~~I~~~ 287 (310)
T COG0167 234 LYKRLGGDIPIIGVGGIETGEDALEFIL--AGASAVQVGTALIYKGPGIVKEIIKG 287 (310)
T ss_pred HHHhcCCCCcEEEecCcCcHHHHHHHHH--cCCchheeeeeeeeeCchHHHHHHHH
Confidence 9999855699999999999999999997 799999999999999 9999999764
No 47
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.83 E-value=2.4e-19 Score=184.03 Aligned_cols=230 Identities=15% Similarity=0.172 Sum_probs=162.8
Q ss_pred cccCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCCh----------------------h--hh-h
Q 009196 179 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQA----------------------S--EW-A 233 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~----------------------~--e~-~ 233 (540)
+..+++|+|++++|-=.+-.-.-.+++. +.|++.+++.-+..++.. ++. . .| +
T Consensus 5 ~~~Gl~l~nPi~~asG~~~~~~~~~~~~-~~G~Gavv~ksvt~~~~~-gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~~ 82 (295)
T PF01180_consen 5 NFCGLTLKNPIGLASGLDKNGEEIKRLF-DAGFGAVVTKSVTPEPRE-GNPEPRIFRLPEGESILNSMGLPNPGLEYYLE 82 (295)
T ss_dssp EETTEEESSSEEE-TTSSTSSHHHHHHH-HHSSSEEEEEEE-SSGB---SSSS-EEEETTETEEEE---S-BSHHHHHHH
T ss_pred EECCEEcCCCcEECCcCCCCchhhhhhh-cCCccEEEeccccccccc-cccCCcEEeeccccccccccCCChHHHHHHHH
Confidence 6679999999999842211123344444 478988877666544321 110 0 00 0
Q ss_pred hh----hccc--CCCeEEEEecCCc---HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHH
Q 009196 234 LL----RRHS--SEDLFGVQICGAY---PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304 (540)
Q Consensus 234 ll----~~~~--~e~p~~vQL~G~~---p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~ 304 (540)
.+ +... ...|+++++.|.. .++|.+.|+.++ +|+|+||||++||... .+..+..+++...++++
T Consensus 83 ~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~--~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~ 155 (295)
T PF01180_consen 83 RLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE--AGADALELNLSCPNVP-----GGRPFGQDPELVAEIVR 155 (295)
T ss_dssp HHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH--HHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHH
T ss_pred HHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc--CcCCceEEEeeccCCC-----CccccccCHHHHHHHHH
Confidence 11 1111 2468999999999 999999999886 5899999999999753 34456778899999999
Q ss_pred HhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc-----------------cCccCCCcC----HHH
Q 009196 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-----------------QQRYSKLAD----WDY 363 (540)
Q Consensus 305 av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr-----------------~q~y~g~ad----w~~ 363 (540)
.+++.+++||.||+.....+ .....++..+.+.|+++|++.+++. ..+++|++. +.+
T Consensus 156 ~v~~~~~~Pv~vKL~p~~~~--~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~ 233 (295)
T PF01180_consen 156 AVREAVDIPVFVKLSPNFTD--IEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRW 233 (295)
T ss_dssp HHHHHHSSEEEEEE-STSSC--HHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHH
T ss_pred HHHhccCCCEEEEecCCCCc--hHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHH
Confidence 99998899999999986543 3345667777789999999544321 122556553 678
Q ss_pred HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH-HhCCCchHHHHhc
Q 009196 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA-LIKPWIFTEIKEQ 421 (540)
Q Consensus 364 I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga-L~nPwif~eik~~ 421 (540)
|+++++.++.++||||+|||.|++|+.+++. .|||.|+|+.++ +.+|+++.+|.++
T Consensus 234 V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~--aGA~~Vqv~Sal~~~Gp~~~~~i~~~ 290 (295)
T PF01180_consen 234 VRELRKALGQDIPIIGVGGIHSGEDAIEFLM--AGASAVQVCSALIYRGPGVIRRINRE 290 (295)
T ss_dssp HHHHHHHTTTSSEEEEESS--SHHHHHHHHH--HTESEEEESHHHHHHGTTHHHHHHHH
T ss_pred HHHHHhccccceEEEEeCCcCCHHHHHHHHH--hCCCHheechhhhhcCcHHHHHHHHH
Confidence 8999999854599999999999999999998 799999999999 6699999999764
No 48
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.77 E-value=1.5e-17 Score=173.82 Aligned_cols=211 Identities=18% Similarity=0.262 Sum_probs=150.8
Q ss_pred cCcccCCcEEEccCCCCC------CHHHHHHHHHhCCCEEEeccceechhcc-CChhhhhhhhcccCCCeEEEEecCC--
Q 009196 181 KLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQ-GQASEWALLRRHSSEDLFGVQICGA-- 251 (540)
Q Consensus 181 ~~l~lknrliLAPM~~vt------dlpfR~l~~~~Gadl~~TEmi~a~~l~~-g~~~e~~ll~~~~~e~p~~vQL~G~-- 251 (540)
-+.+|+.|++.|||++.+ +......|++.|..+.++..-.. +.. ....++..++....+.|+++.|++.
T Consensus 48 ~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~--~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~ 125 (333)
T TIGR02151 48 LGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAA--LKDPETADTFEVVREEAPNGPLIANIGAPQL 125 (333)
T ss_pred CCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhh--ccChhhHhHHHHHHHhCCCCcEEeecCchhh
Confidence 356789999999999998 44445578889988887764322 111 1122344455545678888877653
Q ss_pred ---cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhH
Q 009196 252 ---YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNR 328 (540)
Q Consensus 252 ---~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~ 328 (540)
+++.+.++++.+ +.|+++||+.|+...+...|.. +.+...++++.+++.+++||.||.. |.. .
T Consensus 126 ~~~~~~~~~~~i~~i----~adal~i~ln~~q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPVivK~~-g~g----~ 191 (333)
T TIGR02151 126 VEGGPEEAQEAIDMI----EADALAIHLNVLQELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIVKEV-GFG----I 191 (333)
T ss_pred ccccHHHHHHHHHHh----cCCCEEEcCcccccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEEEec-CCC----C
Confidence 344555555544 5789999999998766655553 3356778999999999999999976 431 2
Q ss_pred HHHHHHHHHHcCCcEEEEecccccC-------c----c--CCCcCH-----HHHHHHHH-HcCCCceEEEeCCCCCHHHH
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQ-------R----Y--SKLADW-----DYIYQCAR-KASDDLQVLGNGDIYSYLDW 389 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q-------~----y--~g~adw-----~~I~~i~~-~~~~~IPVIgNGdI~s~eDa 389 (540)
..+.++.|+++|+|+|+||||.... + + ....+| +.+.++++ .+ ++|||++|||.++.|+
T Consensus 192 ~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipVIasGGI~~~~di 269 (333)
T TIGR02151 192 SKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAP--DAPIIASGGLRTGLDV 269 (333)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCC--CCeEEEECCCCCHHHH
Confidence 4688999999999999999975321 0 1 112345 35556665 33 6999999999999999
Q ss_pred HHHHhcCCCcCeeeecHHHHhC
Q 009196 390 NKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 390 ~~~l~~~~gaDgVMIGRgaL~n 411 (540)
.+++. .|||+||+||++|..
T Consensus 270 ~kaLa--lGAd~V~igr~~L~~ 289 (333)
T TIGR02151 270 AKAIA--LGADAVGMARPFLKA 289 (333)
T ss_pred HHHHH--hCCCeehhhHHHHHH
Confidence 99998 689999999999843
No 49
>PLN02826 dihydroorotate dehydrogenase
Probab=99.77 E-value=2.9e-17 Score=175.62 Aligned_cols=231 Identities=15% Similarity=0.129 Sum_probs=170.8
Q ss_pred cccccCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhc-----------------cC----Ch--hhh-
Q 009196 177 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL-----------------QG----QA--SEW- 232 (540)
Q Consensus 177 p~e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~-----------------~g----~~--~e~- 232 (540)
+.++.+++|+|++.||-=..-....++.+.. +|.+.+.+..+...+-- +. +. ..+
T Consensus 75 ~~~~~Gl~f~NPvglAAG~dkn~~~~~~l~~-lGfG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~~ 153 (409)
T PLN02826 75 GVEVWGRTFSNPIGLAAGFDKNAEAVEGLLG-LGFGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVA 153 (409)
T ss_pred ceEECCEECCCCCEECcccCCCHHHHHHHHh-cCCCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHHH
Confidence 4578899999999999754433345555554 58888777666543310 00 00 011
Q ss_pred hhhhcc-c-----------------------CCCeEEEEecCC-----cHHHHHHHHHHHHHhCCCCEEEecCCCCCccc
Q 009196 233 ALLRRH-S-----------------------SEDLFGVQICGA-----YPDTLARTVELIDQQCTVDFIDINMGCPIDIV 283 (540)
Q Consensus 233 ~ll~~~-~-----------------------~e~p~~vQL~G~-----~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v 283 (540)
..+... . ...|+++.|.++ .+++|++.++.+.. .+|.|+||.+||...
T Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~--~aDylelNiScPNtp- 230 (409)
T PLN02826 154 KRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQ--YADYLVINVSSPNTP- 230 (409)
T ss_pred HHHHHHhhhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhh--hCCEEEEECCCCCCC-
Confidence 111111 0 123899999877 57999999998863 489999999999852
Q ss_pred ccCCccccccCCchHHHHHHHHhccc---------ccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc---
Q 009196 284 VNKGAGSCLLTKPMRMKGIIEATSGT---------VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR--- 351 (540)
Q Consensus 284 ~~~G~GsaLl~~p~~l~eIv~av~~~---------v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr--- 351 (540)
|-..+++++.+.++++++++. ..+||.||+.... +.+++.++++.+.+.|+|+|++.+++.
T Consensus 231 -----glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl--~~~di~~ia~~a~~~G~dGIi~~NTt~~r~ 303 (409)
T PLN02826 231 -----GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDL--SKEDLEDIAAVALALGIDGLIISNTTISRP 303 (409)
T ss_pred -----CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCC--CHHHHHHHHHHHHHcCCCEEEEEcccCcCc
Confidence 334457889999999988643 3689999998754 335788999999999999999987542
Q ss_pred -----------cCccCCCc----CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC-CCch
Q 009196 352 -----------QQRYSKLA----DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIF 415 (540)
Q Consensus 352 -----------~q~y~g~a----dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-Pwif 415 (540)
.++++|++ -.++++++++.++.++||||.|||.|.+|+.+++. .||+.|+|+++++.+ |+++
T Consensus 304 ~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~--AGAs~VQv~Ta~~~~Gp~~i 381 (409)
T PLN02826 304 DSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIR--AGASLVQLYTAFAYEGPALI 381 (409)
T ss_pred cchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH--hCCCeeeecHHHHhcCHHHH
Confidence 22356655 36788899888865799999999999999999997 799999999999885 9999
Q ss_pred HHHHh
Q 009196 416 TEIKE 420 (540)
Q Consensus 416 ~eik~ 420 (540)
.+|++
T Consensus 382 ~~I~~ 386 (409)
T PLN02826 382 PRIKA 386 (409)
T ss_pred HHHHH
Confidence 88875
No 50
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.75 E-value=6.9e-17 Score=170.15 Aligned_cols=212 Identities=17% Similarity=0.199 Sum_probs=153.2
Q ss_pred CcccCCcEEEccCCCCCCHHHHH------HHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecC-----
Q 009196 182 LIDFREKLYLAPLTTVGNLPFRR------VCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG----- 250 (540)
Q Consensus 182 ~l~lknrliLAPM~~vtdlpfR~------l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G----- 250 (540)
+.+++.|++.|||++.+...++. .|.+.|..+.++.+-..-.- .....++..++......|+++.|+.
T Consensus 56 g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~-~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~ 134 (352)
T PRK05437 56 GKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKD-PELADSFSVVRKVAPDGLLFANLGAVQLYG 134 (352)
T ss_pred CceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccC-hhhHHHHHHHHHHCCCceEEeecCccccCC
Confidence 45789999999999998766543 66788999988887432110 0112334445554457788875554
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHH
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~ 330 (540)
.+++.+.++++.+ +.|+++||++||+..+...|. .+.+.+.++++++++.+++||.||... .. ...
T Consensus 135 ~~~~~~~~~~~~~----~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g-~g----~s~ 200 (352)
T PRK05437 135 YGVEEAQRAVEMI----EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEVG-FG----ISK 200 (352)
T ss_pred CCHHHHHHHHHhc----CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeCC-CC----CcH
Confidence 4567777766554 579999999998876554443 355667899999999999999999873 21 225
Q ss_pred HHHHHHHHcCCcEEEEecccccC-------c------cCCCcCH-----HHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQ-------R------YSKLADW-----DYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q-------~------y~g~adw-----~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
+.++.+.++|+|+|+|+|+.... + +....+| ..+.++++.+. ++|||++|||.++.|+.++
T Consensus 201 ~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~-~ipvia~GGI~~~~dv~k~ 279 (352)
T PRK05437 201 ETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLP-DLPIIASGGIRNGLDIAKA 279 (352)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHH
Confidence 78899999999999999874210 1 1112233 46677777643 6999999999999999999
Q ss_pred HhcCCCcCeeeecHHHHhC
Q 009196 393 KSDCPELASCMIARGALIK 411 (540)
Q Consensus 393 l~~~~gaDgVMIGRgaL~n 411 (540)
+. .|||+|++||++|..
T Consensus 280 l~--~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 280 LA--LGADAVGMAGPFLKA 296 (352)
T ss_pred HH--cCCCEEEEhHHHHHH
Confidence 98 689999999999863
No 51
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.73 E-value=1.7e-17 Score=175.29 Aligned_cols=178 Identities=14% Similarity=0.127 Sum_probs=142.5
Q ss_pred ccccCcccCCcEEEccCCCCCCHHHHHHHHHhCC-CEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHH
Q 009196 178 REKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTL 256 (540)
Q Consensus 178 ~e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Ga-dl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~ 256 (540)
..++.+.|+.|+++|||+++++.+||..+.++|+ +++.++.+. .++.+..++..||++.++
T Consensus 39 ~~~~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~---------------~~~~~~e~l~~qi~~~~~--- 100 (368)
T PRK08649 39 WQIDAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW---------------TRYEDPEPILDEIASLGK--- 100 (368)
T ss_pred eeecceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc---------------ccCCCHHHHHHHHHhcCc---
Confidence 3456788999999999999999999999999986 777744332 223344556678888777
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHH
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 336 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~l 336 (540)
+++++.++ +.+.+ | .+|+++.++|++++++ + |+||+|++ ..+..++++.+
T Consensus 101 ~~~~~~~~-~~~~~--------P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~~----~~~~~e~a~~l 150 (368)
T PRK08649 101 DEATRLMQ-ELYAE--------P--------------IKPELITERIAEIRDA-G--VIVAVSLS----PQRAQELAPTV 150 (368)
T ss_pred HHHHHHHH-HhhcC--------C--------------CCHHHHHHHHHHHHhC-e--EEEEEecC----CcCHHHHHHHH
Confidence 45555555 33322 3 4699999999999986 3 66777773 24568999999
Q ss_pred HHcCCcEEEEecccccCccCCCc-CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 337 GTWGASAVTVHGRTRQQRYSKLA-DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 337 eeaGvdaItVHgRtr~q~y~g~a-dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
.++|+++|++|+||+.|.|.+.. +|..+.++.+.+ ++|||+ |+|.|++++.++++ .|||+||+|||-
T Consensus 151 ~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-G~V~t~e~A~~l~~--aGAD~V~VG~G~ 218 (368)
T PRK08649 151 VEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-GGCVTYTTALHLMR--TGAAGVLVGIGP 218 (368)
T ss_pred HHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 99999999999999999998876 799888888887 799999 99999999999885 899999999885
No 52
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.72 E-value=1.1e-16 Score=160.11 Aligned_cols=156 Identities=13% Similarity=0.202 Sum_probs=125.6
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccE---EEEe
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPI---TIKV 318 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPV---tVKi 318 (540)
+-+|+.|. ...+..+.+.+ .+|++-+ +.|++++++|+++.++++.+.+.+ .+++ .+|+
T Consensus 76 ~pv~vgGG-irs~edv~~~l--~~Ga~kv--------------viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~ 138 (241)
T PRK14024 76 VKVELSGG-IRDDESLEAAL--ATGCARV--------------NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAA 138 (241)
T ss_pred CCEEEcCC-CCCHHHHHHHH--HCCCCEE--------------EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEecc
Confidence 44787774 22233333333 3466643 458999999999999999987665 4566 6777
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh-cCC
Q 009196 319 RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS-DCP 397 (540)
Q Consensus 319 R~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~-~~~ 397 (540)
+ ||.+...+..++++.++++|++.|++|+|++.++|+|+ ||+.+.++++.+ ++|||+||||+|++|+.+++. ..+
T Consensus 139 ~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~ 214 (241)
T PRK14024 139 R-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPL 214 (241)
T ss_pred C-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccC
Confidence 5 99876678899999999999999999999999999985 999999999988 799999999999999998753 126
Q ss_pred CcCeeeecHHHHhCCCchHHHHh
Q 009196 398 ELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 398 gaDgVMIGRgaL~nPwif~eik~ 420 (540)
|||+|||||+++.++.-+.++++
T Consensus 215 GvdgV~igra~~~g~~~~~~~~~ 237 (241)
T PRK14024 215 GVEGAIVGKALYAGAFTLPEALA 237 (241)
T ss_pred CccEEEEeHHHHcCCCCHHHHHH
Confidence 99999999999999877776543
No 53
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.69 E-value=1.6e-15 Score=158.34 Aligned_cols=211 Identities=18% Similarity=0.184 Sum_probs=147.8
Q ss_pred cCcccCCcEEEccCCCCC------CHHHHHHHHHhCCCEEEeccceechhcc-CChhhhhhhhcccCCCeEEEEecC---
Q 009196 181 KLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQ-GQASEWALLRRHSSEDLFGVQICG--- 250 (540)
Q Consensus 181 ~~l~lknrliLAPM~~vt------dlpfR~l~~~~Gadl~~TEmi~a~~l~~-g~~~e~~ll~~~~~e~p~~vQL~G--- 250 (540)
-+.+|+.|++.|||++.+ +.-.-+.+.+.|..+.+...... +.. ....++..++....+.|+++.|+.
T Consensus 47 ~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~--~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~ 124 (326)
T cd02811 47 LGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAA--LEDPELAESFTVVREAPPNGPLIANLGAVQL 124 (326)
T ss_pred CCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhh--ccChhhhhHHHHHHHhCCCceEEeecCcccc
Confidence 356899999999999977 45556666777876665544211 111 111344455555666787766654
Q ss_pred --CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhH
Q 009196 251 --AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNR 328 (540)
Q Consensus 251 --~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~ 328 (540)
.+++.+.++.+.+ ++|+++||++||+..+...|. ++.+.+.+.++.+++.+++||.||.... ..
T Consensus 125 ~~~~~~~~~~~i~~~----~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPVivK~~g~-----g~ 190 (326)
T cd02811 125 NGYGVEEARRAVEMI----EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVKEVGF-----GI 190 (326)
T ss_pred CCCCHHHHHHHHHhc----CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEEecCC-----CC
Confidence 3566666665544 579999999998765444433 3455677889999998999999998532 12
Q ss_pred HHHHHHHHHHcCCcEEEEecccc---------cCcc------CCCcCH-----HHHHHHHHHcCCCceEEEeCCCCCHHH
Q 009196 329 IDSLIADIGTWGASAVTVHGRTR---------QQRY------SKLADW-----DYIYQCARKASDDLQVLGNGDIYSYLD 388 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr---------~q~y------~g~adw-----~~I~~i~~~~~~~IPVIgNGdI~s~eD 388 (540)
..+.++.|+++|+|+|.|+|+-. .+.. ....+| ..+.++++.++ ++|||++|||.+..|
T Consensus 191 s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~d 269 (326)
T cd02811 191 SRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLD 269 (326)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHH
Confidence 25788999999999999988521 0111 111233 46667777665 699999999999999
Q ss_pred HHHHHhcCCCcCeeeecHHHHh
Q 009196 389 WNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 389 a~~~l~~~~gaDgVMIGRgaL~ 410 (540)
+.+++. .|||+|++||++|.
T Consensus 270 v~kal~--lGAd~V~i~~~~L~ 289 (326)
T cd02811 270 IAKALA--LGADLVGMAGPFLK 289 (326)
T ss_pred HHHHHH--hCCCEEEEcHHHHH
Confidence 999998 68999999999873
No 54
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.61 E-value=1.8e-14 Score=142.31 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=135.5
Q ss_pred CCcEEEccCCCCCCHHHHHHHHHhCC-CEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcH-HHHHHHHHHH
Q 009196 186 REKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYP-DTLARTVELI 263 (540)
Q Consensus 186 knrliLAPM~~vtdlpfR~l~~~~Ga-dl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p-~~~a~AA~~~ 263 (540)
+.++++|||+++++..|+..+.++|+ +++.++++....+.+.- +.++.. .+.|+++++..+++ ..+.+.++.+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~----~~i~~~-~~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEI----RKIRAL-TDKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHH----HHHHHh-cCCCeEEeEecCCCCcCHHHHHHHH
Confidence 47899999999999999999998875 77767777554432211 112211 14578899999875 3455556666
Q ss_pred HHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcE
Q 009196 264 DQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASA 343 (540)
Q Consensus 264 ~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvda 343 (540)
. ++|+|+|.|+.++|. ++++.+++ .++++.+++.. .+.++.+.+.|+++
T Consensus 77 ~-~~g~d~v~l~~~~~~--------------------~~~~~~~~-~~i~~i~~v~~---------~~~~~~~~~~gad~ 125 (236)
T cd04730 77 L-EEGVPVVSFSFGPPA--------------------EVVERLKA-AGIKVIPTVTS---------VEEARKAEAAGADA 125 (236)
T ss_pred H-hCCCCEEEEcCCCCH--------------------HHHHHHHH-cCCEEEEeCCC---------HHHHHHHHHcCCCE
Confidence 5 689999999876331 22333332 36777776532 24466778899999
Q ss_pred EEEecccccCccCCC---cCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCc
Q 009196 344 VTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 414 (540)
Q Consensus 344 ItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwi 414 (540)
|.++++. .+++.+. ..|+++.++++.+ ++||+++|||.+++++.+++. .|+|+||||++++..+..
T Consensus 126 i~~~~~~-~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~--~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 126 LVAQGAE-AGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALA--LGADGVQMGTRFLATEES 194 (236)
T ss_pred EEEeCcC-CCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHH--cCCcEEEEchhhhcCccc
Confidence 9999873 2333332 4588999999888 699999999999999999886 799999999999877643
No 55
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.59 E-value=7.7e-14 Score=130.83 Aligned_cols=192 Identities=12% Similarity=0.020 Sum_probs=137.5
Q ss_pred EEEccCCCCC-C--HHHHHHHHHhCCCEEEeccceechhccCChh-hhhhhhcccCCCeEEEEecCCcHHHHHH-HHHHH
Q 009196 189 LYLAPLTTVG-N--LPFRRVCKVLGADVTCGEMAMCTNLLQGQAS-EWALLRRHSSEDLFGVQICGAYPDTLAR-TVELI 263 (540)
Q Consensus 189 liLAPM~~vt-d--lpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~-e~~ll~~~~~e~p~~vQL~G~~p~~~a~-AA~~~ 263 (540)
+++++|++.. + ..+.+.+.+.|++++.+......+....... +......+..+.|+++|++.+++..+.. +|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 4688998864 2 3344555567899988877666654332221 0111223455789999999988776554 34556
Q ss_pred HHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHcCCc
Q 009196 264 DQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGAS 342 (540)
Q Consensus 264 ~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leeaGvd 342 (540)
. ++|+|+|+||.+||.. ++...++++++++.+ ++|+.+|++...... .. .+.+.|++
T Consensus 81 ~-~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~--~~-----~~~~~g~d 138 (200)
T cd04722 81 R-AAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELA--AA-----AAEEAGVD 138 (200)
T ss_pred H-HcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccc--hh-----hHHHcCCC
Confidence 5 7899999999999864 788889999999887 899999998743211 11 17889999
Q ss_pred EEEEecccccCccCCCcC--HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 343 AVTVHGRTRQQRYSKLAD--WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 343 aItVHgRtr~q~y~g~ad--w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.|.++++...+....... ...+..++... ++||+++|||.+++++.+++. .|||+|++||
T Consensus 139 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~~~--~Gad~v~vgs 200 (200)
T cd04722 139 EVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEALA--LGADGVIVGS 200 (200)
T ss_pred EEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHH--hCCCEEEecC
Confidence 999999876554432211 23455566655 799999999999999999887 5899999997
No 56
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.55 E-value=6.2e-14 Score=141.83 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=122.2
Q ss_pred EEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCC---
Q 009196 245 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG--- 321 (540)
Q Consensus 245 ~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G--- 321 (540)
-+|+.| .+..+..+.+++ .+|++.|.|| ++++.+|+++.++++.+... .+++++++|.|
T Consensus 76 pv~~gG-Gi~s~~d~~~l~--~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~ 137 (258)
T PRK01033 76 PLCYGG-GIKTLEQAKKIF--SLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGG 137 (258)
T ss_pred CEEECC-CCCCHHHHHHHH--HCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCC
Confidence 357666 455555655555 4699999996 67789999999999988432 26777887765
Q ss_pred --------CC-CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 322 --------YF-EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 322 --------~~-e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
|. .......++++.+++.|++.|++|++++.+.++| .||+.+.++++.+ ++|||++|||.|.+|+.++
T Consensus 138 ~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l 214 (258)
T PRK01033 138 KFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEA 214 (258)
T ss_pred cEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHH
Confidence 21 1234678999999999999999999999999999 5999999999987 7999999999999999998
Q ss_pred HhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 393 KSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 393 l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
++. .|||||++|+++...-.-..+++
T Consensus 215 ~~~-~GvdgVivg~a~~~~~~~~~~~~ 240 (258)
T PRK01033 215 ILN-LGADAAAAGSLFVFKGVYKAVLI 240 (258)
T ss_pred HHH-CCCCEEEEcceeeeCcccccccc
Confidence 855 89999999999876633333443
No 57
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.55 E-value=1.2e-13 Score=136.66 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=113.9
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec----
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR---- 319 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR---- 319 (540)
+-+|+.|. ...+.++.+++ .+|+|.|= .|++++.+|+.+.++++.+.+.+-+++.+|.+
T Consensus 75 ~pv~~~GG-I~~~ed~~~~~--~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~ 137 (233)
T PRK00748 75 IPVQVGGG-IRSLETVEALL--DAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVAT 137 (233)
T ss_pred CCEEEcCC-cCCHHHHHHHH--HcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEE
Confidence 34666553 33344444333 35888764 37888999999999999886654444444321
Q ss_pred CCCCC-ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 009196 320 TGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 398 (540)
Q Consensus 320 ~G~~e-~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 398 (540)
.||.+ ......++++.+++.|++.|++|++++.+.+.| +||+.++++++.+ ++|||++|||.|++|+.++++. +|
T Consensus 138 ~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~-g~ 213 (233)
T PRK00748 138 DGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGL-GA 213 (233)
T ss_pred ccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHc-CC
Confidence 35643 234668999999999999999999999999998 8999999999988 6999999999999999998874 66
Q ss_pred cCeeeecHHHHhC
Q 009196 399 LASCMIARGALIK 411 (540)
Q Consensus 399 aDgVMIGRgaL~n 411 (540)
||+|||||+++..
T Consensus 214 ~~gv~vg~a~~~~ 226 (233)
T PRK00748 214 VEGVIVGRALYEG 226 (233)
T ss_pred ccEEEEEHHHHcC
Confidence 9999999999865
No 58
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.54 E-value=1.6e-14 Score=146.36 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=104.9
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHH
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 336 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~l 336 (540)
.++|++++ ++|+|.|.+|.|||.+.+. .| |.++|++|+.+. +|++++++||++|+|.|. ..=|+.|
T Consensus 27 ~~~a~iae-~~g~~~v~~~~~~psd~~~-~g-g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-------~~Ea~~L 92 (293)
T PRK04180 27 AEQAKIAE-EAGAVAVMALERVPADIRA-AG-GVARMADPKMIE----EIMDAVSIPVMAKARIGH-------FVEAQIL 92 (293)
T ss_pred HHHHHHHH-HhChHHHHHccCCCchHhh-cC-CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-------HHHHHHH
Confidence 46778776 7999999999999999754 34 999999999866 566667999999999984 1224445
Q ss_pred HHcCCcEEEEecc-----------------------------------------cc------------------------
Q 009196 337 GTWGASAVTVHGR-----------------------------------------TR------------------------ 351 (540)
Q Consensus 337 eeaGvdaItVHgR-----------------------------------------tr------------------------ 351 (540)
+++|+|.|--+.| |.
T Consensus 93 ~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~ 172 (293)
T PRK04180 93 EALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRR 172 (293)
T ss_pred HHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 5555555532111 11
Q ss_pred cCccC----------CCcCHHHHHHHHHHcCCCceEE--EeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 352 QQRYS----------KLADWDYIYQCARKASDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 352 ~q~y~----------g~adw~~I~~i~~~~~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
-.+|+ -.++|+.++++++.. ++||| +.|||.|++++..+++ .|||+|+||++++..+.
T Consensus 173 L~gyt~~~~~~~a~~~~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme--~GAdgVaVGSaI~ks~d 242 (293)
T PRK04180 173 LTSMSEDELYTAAKELQAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQ--LGADGVFVGSGIFKSGD 242 (293)
T ss_pred HhCCCHHHHHhhccccCCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHH--hCCCEEEEcHHhhcCCC
Confidence 11221 236899999999987 79998 9999999999999886 79999999999985553
No 59
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.54 E-value=2e-13 Score=134.85 Aligned_cols=153 Identities=18% Similarity=0.275 Sum_probs=117.8
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcc-cccccEEEE----
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG-TVDKPITIK---- 317 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~-~v~iPVtVK---- 317 (540)
.+-+|+.|. ...+..+.+++ ++|+|.|=| |++++.+|+++.++++.+.. .+-+++.+|
T Consensus 73 ~~pv~~~Gg-I~~~e~~~~~~--~~Gad~vvi--------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~ 135 (234)
T cd04732 73 GIPVQVGGG-IRSLEDIERLL--DLGVSRVII--------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKV 135 (234)
T ss_pred CCCEEEeCC-cCCHHHHHHHH--HcCCCEEEE--------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEE
Confidence 355777775 34444444444 368999843 67788999999999998754 222222222
Q ss_pred ecCCCCC-ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 009196 318 VRTGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 396 (540)
Q Consensus 318 iR~G~~e-~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 396 (540)
++.||.+ ...+..++++.++++|++.|++|++++.+.+.+ ++|+.+.++++.+ ++||+++|||.+.+|+.+++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~-- 210 (234)
T cd04732 136 ATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKE-- 210 (234)
T ss_pred EECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHH--
Confidence 2234432 334678999999999999999999999998877 8999999999988 799999999999999999876
Q ss_pred CCcCeeeecHHHHhCCCchHH
Q 009196 397 PELASCMIARGALIKPWIFTE 417 (540)
Q Consensus 397 ~gaDgVMIGRgaL~nPwif~e 417 (540)
.|||+|||||+++.++--+.+
T Consensus 211 ~Ga~gv~vg~~~~~~~~~~~~ 231 (234)
T cd04732 211 LGVAGVIVGKALYEGKITLEE 231 (234)
T ss_pred CCCCEEEEeHHHHcCCCCHHH
Confidence 699999999999999865544
No 60
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.53 E-value=5.3e-13 Score=140.94 Aligned_cols=209 Identities=13% Similarity=0.085 Sum_probs=148.6
Q ss_pred CcccCCcEEEccCCCC------CCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCC-cHH
Q 009196 182 LIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA-YPD 254 (540)
Q Consensus 182 ~l~lknrliLAPM~~v------tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~-~p~ 254 (540)
+..+.-|+++|||... ++...-+-|.+.|.-++.|-+.++. .+-+.....+.++.+||+-. +.+
T Consensus 76 G~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~s---------lEev~~~~~~~~~wfQlY~~~dr~ 146 (367)
T TIGR02708 76 GHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTAD---------LPEISEALNGTPHWFQFYMSKDDG 146 (367)
T ss_pred CcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCC---------HHHHHhhcCCCceEEEEeccCCHH
Confidence 5678889999998653 3466777777888887776553221 11222222346899999985 445
Q ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcccc---------------------cCCccccc-----cCCchHHHHHHHHhcc
Q 009196 255 TLARTVELIDQQCTVDFIDINMGCPIDIVV---------------------NKGAGSCL-----LTKPMRMKGIIEATSG 308 (540)
Q Consensus 255 ~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~---------------------~~G~GsaL-----l~~p~~l~eIv~av~~ 308 (540)
...+..++++ .+||.+|=|..-+|..-.+ ..+.+..+ ..++.+--+-++.+++
T Consensus 147 ~~~~li~RA~-~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~ 225 (367)
T TIGR02708 147 INRDIMDRVK-ADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAG 225 (367)
T ss_pred HHHHHHHHHH-HcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHH
Confidence 5567777877 7899998776665532111 01111100 0112222356788888
Q ss_pred cccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHH
Q 009196 309 TVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD 388 (540)
Q Consensus 309 ~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eD 388 (540)
.+++||+|| |+. ..+.|+++.++||++|.|.+.-..|.+.+++.|+.+.++++.+..++|||++|||++..|
T Consensus 226 ~~~~PvivK---Gv~-----~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~D 297 (367)
T TIGR02708 226 YSGLPVYVK---GPQ-----CPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQH 297 (367)
T ss_pred hcCCCEEEe---CCC-----CHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHH
Confidence 889999999 332 256788999999999876555567889999999999999998854699999999999999
Q ss_pred HHHHHhcCCCcCeeeecHHHHh
Q 009196 389 WNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 389 a~~~l~~~~gaDgVMIGRgaL~ 410 (540)
+.++|. .|||+|||||.+|.
T Consensus 298 v~KaLa--lGAd~V~igR~~l~ 317 (367)
T TIGR02708 298 VFKALA--SGADLVALGRPVIY 317 (367)
T ss_pred HHHHHH--cCCCEEEEcHHHHH
Confidence 999998 79999999999874
No 61
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.52 E-value=4.2e-13 Score=133.55 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=119.0
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhc-ccccccEEEE---e
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS-GTVDKPITIK---V 318 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~-~~v~iPVtVK---i 318 (540)
.+-+|+.| ....+..+...+ .+|+|.|-| |+.++++|+.+.++++.+. +.+-+.+.+| +
T Consensus 76 ~~~l~v~G-Gi~~~~~~~~~~--~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v 138 (241)
T PRK13585 76 GVPVQLGG-GIRSAEDAASLL--DLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEV 138 (241)
T ss_pred CCcEEEcC-CcCCHHHHHHHH--HcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEE
Confidence 35567754 333443333333 369999877 6778889999999988873 2221122222 1
Q ss_pred c-CCCCCChh-HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 009196 319 R-TGYFEGKN-RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 396 (540)
Q Consensus 319 R-~G~~e~~~-~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 396 (540)
. .||.+... +..++++.+.+.|++.|++|++++.+.+.+ .+|+.++++++.+ ++||+++|||+|++|+.+++.
T Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~-- 213 (241)
T PRK13585 139 VIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEG-VNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKE-- 213 (241)
T ss_pred EECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH--
Confidence 1 37765433 678999999999999999999988777765 7999999999988 799999999999999999654
Q ss_pred CCcCeeeecHHHHhCCCchHHHHh
Q 009196 397 PELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 397 ~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
.||++||+|++++.+|..+.+++.
T Consensus 214 ~Ga~gv~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 214 AGAAGVVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred cCCCEEEEEHHHhcCCcCHHHHHH
Confidence 899999999999999998887653
No 62
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.51 E-value=9.9e-13 Score=137.37 Aligned_cols=198 Identities=20% Similarity=0.156 Sum_probs=140.9
Q ss_pred CcccCCcEEEccCCCCCCHHHHHHHHHhC-CCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHH
Q 009196 182 LIDFREKLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTV 260 (540)
Q Consensus 182 ~l~lknrliLAPM~~vtdlpfR~l~~~~G-adl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA 260 (540)
.+.++.|++.|||.++|+..+...+.+.| .+++..+|.. +.+ .. .++.. .+...+.+..+..++....+.
T Consensus 30 ~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~----~~---~i~~v-k~~l~v~~~~~~~~~~~~~~~ 100 (325)
T cd00381 30 NITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQ----AE---EVRKV-KGRLLVGAAVGTREDDKERAE 100 (325)
T ss_pred ccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHH----HH---HHHHh-ccCceEEEecCCChhHHHHHH
Confidence 47888999999999999999998666655 5888776632 111 11 12111 134455566777777666666
Q ss_pred HHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc-ccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 261 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD-KPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 261 ~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~-iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
.++ ++|+|.|+|+++. | +++.+.++++.+++... +||.+ |.- ...+.++.+.++
T Consensus 101 ~l~--eagv~~I~vd~~~----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~v----~t~~~A~~l~~a 155 (325)
T cd00381 101 ALV--EAGVDVIVIDSAH----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GNV----VTAEAARDLIDA 155 (325)
T ss_pred HHH--hcCCCEEEEECCC----------C-----CcHHHHHHHHHHHHHCCCceEEE----CCC----CCHHHHHHHHhc
Confidence 555 4699999998743 2 23566778888887652 45544 321 234668888999
Q ss_pred CCcEEEEec------ccccCccCCCcCHHHHHHHHHHcCC-CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 340 GASAVTVHG------RTRQQRYSKLADWDYIYQCARKASD-DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 340 GvdaItVHg------Rtr~q~y~g~adw~~I~~i~~~~~~-~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
|+|+|.|+. +++...+.+.+.|..+.++++.+.. ++|||++|||.+..|+.+++. .|||+||+||.++.-.
T Consensus 156 GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla--~GA~~VmiGt~fa~t~ 233 (325)
T cd00381 156 GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALA--AGADAVMLGSLLAGTD 233 (325)
T ss_pred CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH--cCCCEEEecchhcccc
Confidence 999999863 3444555677889988888776521 499999999999999999997 7999999999998865
Q ss_pred Cch
Q 009196 413 WIF 415 (540)
Q Consensus 413 wif 415 (540)
.-.
T Consensus 234 Es~ 236 (325)
T cd00381 234 ESP 236 (325)
T ss_pred cCC
Confidence 443
No 63
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.49 E-value=4.8e-13 Score=133.57 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=115.9
Q ss_pred EEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcc-cccccEE---------
Q 009196 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG-TVDKPIT--------- 315 (540)
Q Consensus 246 vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~-~v~iPVt--------- 315 (540)
+++.|. ...+..+.+.+. .|+|.|.++ ++++.+|+.+.++++.+.. .+-+++.
T Consensus 74 v~~~GG-I~s~~d~~~~l~--~G~~~v~ig--------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~ 136 (243)
T cd04731 74 LTVGGG-IRSLEDARRLLR--AGADKVSIN--------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGY 136 (243)
T ss_pred EEEeCC-CCCHHHHHHHHH--cCCceEEEC--------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCce
Confidence 555553 223333333332 589999885 5677899999999998853 3434444
Q ss_pred -EEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 009196 316 -IKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 394 (540)
Q Consensus 316 -VKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 394 (540)
|++|.++.+...+..++++.+++.|++.|++|++++.+...+ .+|+++.++++.+ ++|||++|||++++|+.+++.
T Consensus 137 ~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~ 213 (243)
T cd04731 137 EVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKG-YDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFE 213 (243)
T ss_pred EEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHH
Confidence 445555555566788999999999999999999987665555 5999999999988 799999999999999999888
Q ss_pred cCCCcCeeeecHHHHhCCCchHHHH
Q 009196 395 DCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 395 ~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
. +|||+||+||+++..=.-+.+++
T Consensus 214 ~-~g~dgv~vg~al~~~~~~~~~~~ 237 (243)
T cd04731 214 E-GGADAALAASIFHFGEYTIAELK 237 (243)
T ss_pred h-CCCCEEEEeHHHHcCCCCHHHHH
Confidence 5 79999999999976544444443
No 64
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.48 E-value=9.8e-13 Score=130.05 Aligned_cols=179 Identities=15% Similarity=0.230 Sum_probs=125.5
Q ss_pred HHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccC
Q 009196 207 KVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNK 286 (540)
Q Consensus 207 ~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~ 286 (540)
..+|++.++- +.-.....+......+++.......+-+|+.| .......+.+.+ ++|+|.|=+
T Consensus 38 ~~~g~~~l~v--~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~gg-GI~~~ed~~~~~--~~Ga~~vvl------------ 100 (230)
T TIGR00007 38 EEEGAERIHV--VDLDGAKEGGPVNLPVIKKIVRETGVPVQVGG-GIRSLEDVEKLL--DLGVDRVII------------ 100 (230)
T ss_pred HHcCCCEEEE--EeCCccccCCCCcHHHHHHHHHhcCCCEEEeC-CcCCHHHHHHHH--HcCCCEEEE------------
Confidence 4578875432 22233333333223333322222234567755 333333333333 369998733
Q ss_pred CccccccCCchHHHHHHHHhc-ccccccEEEEec------CCCCCCh-hHHHHHHHHHHHcCCcEEEEecccccCccCCC
Q 009196 287 GAGSCLLTKPMRMKGIIEATS-GTVDKPITIKVR------TGYFEGK-NRIDSLIADIGTWGASAVTVHGRTRQQRYSKL 358 (540)
Q Consensus 287 G~GsaLl~~p~~l~eIv~av~-~~v~iPVtVKiR------~G~~e~~-~~~~~la~~leeaGvdaItVHgRtr~q~y~g~ 358 (540)
|+.++.+|+.+.++++.+. +. +.+++++| .||.+.. ....++++.+++.|++.|++|.+++.+.+.+
T Consensus 101 --gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g- 175 (230)
T TIGR00007 101 --GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG- 175 (230)
T ss_pred --ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC-
Confidence 6778889999999999885 33 34555555 4565532 4668899999999999999999999988876
Q ss_pred cCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 359 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 359 adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
.+|+.+.++++.+ ++||+++|||.+.+|+.+++. .|||+|||||+++.+
T Consensus 176 ~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~--~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 176 PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKK--LGVYGVIVGKALYEG 224 (230)
T ss_pred CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH--CCCCEEEEeHHHHcC
Confidence 7999999999987 799999999999999999775 899999999999876
No 65
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.46 E-value=3.4e-12 Score=128.43 Aligned_cols=182 Identities=11% Similarity=0.141 Sum_probs=129.1
Q ss_pred HHHHHhCCCE-EEeccceechhccCChhhhhhhhcccCCCeEEEEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q 009196 204 RVCKVLGADV-TCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPI 280 (540)
Q Consensus 204 ~l~~~~Gadl-~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~ 280 (540)
+.+..+|++. +++....+. .+....+.+++.-.....+-+|+.|. +.+++.++ +. .|++.|-|
T Consensus 37 ~~~~~~G~~~i~i~dl~~~~---~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~---l~--~Ga~~Vii------ 102 (253)
T PRK02083 37 KRYNEEGADELVFLDITASS---EGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRL---LR--AGADKVSI------ 102 (253)
T ss_pred HHHHHcCCCEEEEEeCCccc---ccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHH---HH--cCCCEEEE------
Confidence 4445678864 344433211 12233344443222222244666664 34444333 32 58999877
Q ss_pred cccccCCccccccCCchHHHHHHHHhc-----cccc-------ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEec
Q 009196 281 DIVVNKGAGSCLLTKPMRMKGIIEATS-----GTVD-------KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHG 348 (540)
Q Consensus 281 ~~v~~~G~GsaLl~~p~~l~eIv~av~-----~~v~-------iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHg 348 (540)
|++++.+|+.+.++.+.+- -.++ .|++||+|.++........++++.+++.|++.|++|+
T Consensus 103 --------gt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~ 174 (253)
T PRK02083 103 --------NSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTS 174 (253)
T ss_pred --------ChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcC
Confidence 4677889999999999862 1223 4779999988765556778999999999999999988
Q ss_pred ccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 349 RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 349 Rtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
..+.+...+ .||+.+.++++.+ ++|||++|||.|.+|+.+++.. +|||+||+|+++...
T Consensus 175 i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~-~G~~gvivg~al~~~ 233 (253)
T PRK02083 175 MDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTE-GGADAALAASIFHFG 233 (253)
T ss_pred CcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHh-CCccEEeEhHHHHcC
Confidence 665555455 4899999999988 7999999999999999998875 799999999998765
No 66
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.46 E-value=8e-13 Score=131.06 Aligned_cols=141 Identities=14% Similarity=0.124 Sum_probs=112.6
Q ss_pred EEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCC----
Q 009196 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG---- 321 (540)
Q Consensus 246 vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G---- 321 (540)
+|+ |+.+..+..+.+++ ..|++.|.|| ++++.+|+++.++++..... .+++++++|.+
T Consensus 77 v~~-~ggi~~~~d~~~~~--~~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~ 138 (232)
T TIGR03572 77 LTV-GGGIRSLEDAKKLL--SLGADKVSIN--------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGS 138 (232)
T ss_pred EEE-ECCCCCHHHHHHHH--HcCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCC
Confidence 555 44455555555544 3599999985 67889999999999887433 26677777764
Q ss_pred --------CC-CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 322 --------YF-EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 322 --------~~-e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
|. ....+..++++.++++|++.|++|++++.+.+.+ .+|+.++++++.+ ++|||++|||.|++|+.++
T Consensus 139 ~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~ 215 (232)
T TIGR03572 139 DYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEV 215 (232)
T ss_pred cEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHH
Confidence 21 1234578999999999999999999998887766 6899999999988 7999999999999999997
Q ss_pred HhcCCCcCeeeecHHH
Q 009196 393 KSDCPELASCMIARGA 408 (540)
Q Consensus 393 l~~~~gaDgVMIGRga 408 (540)
+.. .|||+||||+++
T Consensus 216 l~~-~gadgV~vg~a~ 230 (232)
T TIGR03572 216 ALE-AGASAVAAASLF 230 (232)
T ss_pred HHH-cCCCEEEEehhh
Confidence 776 899999999875
No 67
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.43 E-value=4e-12 Score=133.91 Aligned_cols=212 Identities=12% Similarity=0.056 Sum_probs=147.0
Q ss_pred cCcccCCcEEEccCCCC------CCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCC-cH
Q 009196 181 KLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA-YP 253 (540)
Q Consensus 181 ~~l~lknrliLAPM~~v------tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~-~p 253 (540)
=+..+.-|+++|||... ++...-+-|.+.|.-++.|-+.+.. ..+ +.......+..+||+.. +.
T Consensus 67 lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s------~Ee---i~~~~~~~~~wfQlY~~~d~ 137 (351)
T cd04737 67 LGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTS------LEE---IAKASNGGPKWFQLYMSKDD 137 (351)
T ss_pred CCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCC------HHH---HHHhcCCCCeEEEEeecCCH
Confidence 35678889999998643 2355666667778777765543211 111 22222245799999975 45
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCccccc----CC------------------cccccc-----CCchHHHHHHHHh
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVN----KG------------------AGSCLL-----TKPMRMKGIIEAT 306 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~----~G------------------~GsaLl-----~~p~~l~eIv~av 306 (540)
+......++++ .+|+..|=|...+|..-.+. .+ .|.... -++.+--+.++.+
T Consensus 138 ~~~~~ll~rA~-~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 216 (351)
T cd04737 138 GFNRSLLDRAK-AAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFI 216 (351)
T ss_pred HHHHHHHHHHH-HcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHH
Confidence 55556666776 78999988877665421110 00 010000 0123344677888
Q ss_pred cccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCH
Q 009196 307 SGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSY 386 (540)
Q Consensus 307 ~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~ 386 (540)
++.+++||+||.-+ ..+.++.+.++|+|+|+|.+.-..|.+.+++.|+.+.++++.+..++|||++|||.+.
T Consensus 217 r~~~~~PvivKgv~--------~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g 288 (351)
T cd04737 217 AKISGLPVIVKGIQ--------SPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRG 288 (351)
T ss_pred HHHhCCcEEEecCC--------CHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCH
Confidence 88889999999422 2366888999999999994333456677888899999999988556999999999999
Q ss_pred HHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 387 LDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 387 eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
.|+.++|. .|||+|||||++|...
T Consensus 289 ~Di~kaLa--lGA~~V~iGr~~l~~l 312 (351)
T cd04737 289 EHVFKALA--SGADAVAVGRPVLYGL 312 (351)
T ss_pred HHHHHHHH--cCCCEEEECHHHHHHH
Confidence 99999998 7999999999888643
No 68
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.43 E-value=1.4e-11 Score=129.71 Aligned_cols=212 Identities=12% Similarity=0.081 Sum_probs=147.1
Q ss_pred CcccCCcEEEccCCCCC------CHHHHHHHHHhCCCEEEeccceechhccCChhhhhhh-hcccCCCeEEEEec-CCcH
Q 009196 182 LIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALL-RRHSSEDLFGVQIC-GAYP 253 (540)
Q Consensus 182 ~l~lknrliLAPM~~vt------dlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll-~~~~~e~p~~vQL~-G~~p 253 (540)
+.++.-|+++|||+..+ +...-+-|.+.|..++++-+.+. .++-+ +....+.++.+||+ ..+.
T Consensus 60 G~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~---------s~e~v~~~~~~~~~~w~Qly~~~d~ 130 (344)
T cd02922 60 GHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC---------SLEEIVDARPPDQPLFFQLYVNKDR 130 (344)
T ss_pred CcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccC---------CHHHHHHhcCCCCcEEEEEeecCCH
Confidence 56788999999998433 23555666677888877655432 12222 22233468899997 4566
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccc----cCCc-------------------cccc---cCCchHHHHHHHHhc
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGA-------------------GSCL---LTKPMRMKGIIEATS 307 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~----~~G~-------------------GsaL---l~~p~~l~eIv~av~ 307 (540)
+...+..++++ .+|+++|=|+...|..-.+ +.|+ +... ..++....+.++.++
T Consensus 131 ~~~~~l~~ra~-~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 209 (344)
T cd02922 131 TKTEELLKRAE-KLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLR 209 (344)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHH
Confidence 77777777876 7899999999888843111 0000 1111 113445567889999
Q ss_pred ccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHH---cCCCceEEEeCCCC
Q 009196 308 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARK---ASDDLQVLGNGDIY 384 (540)
Q Consensus 308 ~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~---~~~~IPVIgNGdI~ 384 (540)
+.+++||.|| |.. ..+-|+.+.++|+++|.|.+....+.....+-++.+.++++. +..++|||+.|||.
T Consensus 210 ~~~~~PvivK---gv~-----~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr 281 (344)
T cd02922 210 KHTKLPIVLK---GVQ-----TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVR 281 (344)
T ss_pred HhcCCcEEEE---cCC-----CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 9999999999 332 246678899999999999875433333333445666666663 33369999999999
Q ss_pred CHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 385 SYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 385 s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
+..|+.++|. .|||+|+|||++|..+.
T Consensus 282 ~G~Dv~kala--LGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 282 RGTDVLKALC--LGAKAVGLGRPFLYALS 308 (344)
T ss_pred CHHHHHHHHH--cCCCEEEECHHHHHHHh
Confidence 9999999998 79999999999998764
No 69
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.42 E-value=8.1e-12 Score=129.59 Aligned_cols=189 Identities=15% Similarity=0.111 Sum_probs=130.3
Q ss_pred cccCCcEEEccCCCCCCHHHHHHHHHh-CCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHH
Q 009196 183 IDFREKLYLAPLTTVGNLPFRRVCKVL-GADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVE 261 (540)
Q Consensus 183 l~lknrliLAPM~~vtdlpfR~l~~~~-Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~ 261 (540)
+.++-+++.|||.++++..+---+.+. |.+++=......+.+ ..+...++. ..+.||++.+....|.. .+..+
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l----~~~i~~~~~-~t~~pfgvn~~~~~~~~-~~~~~ 81 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVV----RKEIRKVKE-LTDKPFGVNIMLLSPFV-DELVD 81 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHH----HHHHHHHHH-hcCCCcEEeeecCCCCH-HHHHH
Confidence 456778999999999998776544444 455442222111111 112222332 23579999887755442 33344
Q ss_pred HHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCC
Q 009196 262 LIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGA 341 (540)
Q Consensus 262 ~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGv 341 (540)
.+. +.+++.|-++.|.|. ++++.+++. ++.|.+.+.. .+.++.++++|+
T Consensus 82 ~~~-~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~s---------~~~a~~a~~~Ga 130 (307)
T TIGR03151 82 LVI-EEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVAS---------VALAKRMEKAGA 130 (307)
T ss_pred HHH-hCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcCC---------HHHHHHHHHcCC
Confidence 444 468999998776652 345555554 6666664432 467889999999
Q ss_pred cEEEEecccccCccCC-CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 342 SAVTVHGRTRQQRYSK-LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 342 daItVHgRtr~q~y~g-~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
|.|++||+... ++.+ ..+|..+.++++.+ ++|||++|||.+.+++.+++. .|||+||+|+.++.-+.
T Consensus 131 D~Ivv~g~eag-Gh~g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~--~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 131 DAVIAEGMESG-GHIGELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFA--LGAEAVQMGTRFLCAKE 198 (307)
T ss_pred CEEEEECcccC-CCCCCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHH--cCCCEeecchHHhcccc
Confidence 99999999544 4433 34799999999998 799999999999999999997 79999999998876553
No 70
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.40 E-value=1.8e-11 Score=123.51 Aligned_cols=179 Identities=9% Similarity=0.144 Sum_probs=127.8
Q ss_pred HHhCCC-EEEeccceechhccCChhhhhhhhcccCCCeEEEEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCccc
Q 009196 207 KVLGAD-VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIV 283 (540)
Q Consensus 207 ~~~Gad-l~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v 283 (540)
..+|++ +.++-...+. .+....+.+++.-.....+-+|+.|. +.+++.++ + .+|++.|-|
T Consensus 40 ~~~G~~~l~v~Dl~~~~---~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~---~--~~Ga~~viv--------- 102 (254)
T TIGR00735 40 DEEGADELVFLDITASS---EGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKL---L--RAGADKVSI--------- 102 (254)
T ss_pred HHcCCCEEEEEcCCccc---ccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHH---H--HcCCCEEEE---------
Confidence 346886 4555554332 12223344433221122244677664 44444333 3 358898877
Q ss_pred ccCCccccccCCchHHHHHHHHhc-ccc--cc-----cE------EEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecc
Q 009196 284 VNKGAGSCLLTKPMRMKGIIEATS-GTV--DK-----PI------TIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR 349 (540)
Q Consensus 284 ~~~G~GsaLl~~p~~l~eIv~av~-~~v--~i-----PV------tVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgR 349 (540)
|++++.+|+++.++.+..- +.+ .+ ++ -||+|.++.....+..++++.++++|++.|.+|++
T Consensus 103 -----gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i 177 (254)
T TIGR00735 103 -----NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSM 177 (254)
T ss_pred -----ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCc
Confidence 5778889999999988763 222 22 22 58899877666678899999999999999999999
Q ss_pred cccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 350 TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 350 tr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
++.+. .+.++|+++.++++.+ ++|||++|||.|++|+.+++.. ++||+||+|+.++..
T Consensus 178 ~~~g~-~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~-g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 178 DKDGT-KSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTK-GKADAALAASVFHYR 235 (254)
T ss_pred CcccC-CCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHc-CCcceeeEhHHHhCC
Confidence 88544 4558999999999998 7999999999999999998885 679999999998654
No 71
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.29 E-value=2.2e-10 Score=119.62 Aligned_cols=189 Identities=15% Similarity=0.112 Sum_probs=134.7
Q ss_pred CcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhh-hhhcccCCCeEEEEec-CCcHHHHHHH
Q 009196 182 LIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA-LLRRHSSEDLFGVQIC-GAYPDTLART 259 (540)
Q Consensus 182 ~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~-ll~~~~~e~p~~vQL~-G~~p~~~a~A 259 (540)
++.|.-|++.++|++..|..+-++++++|.--+.--| ...++. +.+.. ....+.+-++ |..++.+.++
T Consensus 33 ~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k~---------~~e~~~~~~r~~-~~~~l~v~~~vg~~~~~~~~~ 102 (326)
T PRK05458 33 PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHRF---------DPEARIPFIKDM-HEQGLIASISVGVKDDEYDFV 102 (326)
T ss_pred CcEecCcEEEecccchhHHHHHHHHHHcCCEEEEecC---------CHHHHHHHHHhc-cccccEEEEEecCCHHHHHHH
Confidence 6789999999999999999999999888643222112 122221 22222 2222233333 3467888888
Q ss_pred HHHHHHhCC--CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEE-ecCCCCCChhHHHHHHHH
Q 009196 260 VELIDQQCT--VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIK-VRTGYFEGKNRIDSLIAD 335 (540)
Q Consensus 260 A~~~~~~aG--~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVK-iR~G~~e~~~~~~~la~~ 335 (540)
.++++ +| +|.|-|.+..|. .+.+.++++.+++.+ +.||.++ +-+ .+-+..
T Consensus 103 ~~Lv~--ag~~~d~i~iD~a~gh---------------~~~~~e~I~~ir~~~p~~~vi~g~V~t---------~e~a~~ 156 (326)
T PRK05458 103 DQLAA--EGLTPEYITIDIAHGH---------------SDSVINMIQHIKKHLPETFVIAGNVGT---------PEAVRE 156 (326)
T ss_pred HHHHh--cCCCCCEEEEECCCCc---------------hHHHHHHHHHHHhhCCCCeEEEEecCC---------HHHHHH
Confidence 88775 55 499999765533 456778899999888 4888886 432 356788
Q ss_pred HHHcCCcEEEEec---ccccC---ccCCCcCHHH--HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 336 IGTWGASAVTVHG---RTRQQ---RYSKLADWDY--IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 336 leeaGvdaItVHg---Rtr~q---~y~g~adw~~--I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
|.++|+|+|.|++ |...+ .-.+.++|.. +.++++.+ ++|||++|||.++.|+.++|. .|||+||+|+.
T Consensus 157 l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa--~GA~aV~vG~~ 232 (326)
T PRK05458 157 LENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIR--FGATMVMIGSL 232 (326)
T ss_pred HHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHH--hCCCEEEechh
Confidence 8999999999873 32111 2234577874 89999887 799999999999999999998 69999999988
Q ss_pred HHh
Q 009196 408 ALI 410 (540)
Q Consensus 408 aL~ 410 (540)
++.
T Consensus 233 ~~~ 235 (326)
T PRK05458 233 FAG 235 (326)
T ss_pred hcC
Confidence 874
No 72
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=99.21 E-value=1.2e-10 Score=122.97 Aligned_cols=168 Identities=12% Similarity=0.026 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCC---------CCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecCC
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTG 321 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~G---------CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~G 321 (540)
.|-++.||+.+. +||||+||||.. .|..+-++|.||+++.+|-+++.+|+.+|++.++ .++.+-++++
T Consensus 173 ~Drfv~Aak~~~-e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~ 251 (400)
T KOG0134|consen 173 VDRFVYAAKAAY-ECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTN 251 (400)
T ss_pred HHHHHHHHHHHH-hcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCch
Confidence 466788888876 799999999965 4888899999999999999999999999999873 3333333322
Q ss_pred ----CCCChhHHHHHHHHHHHcCCcEEEEecccc-------cCccCCCcC----HHHHHHHHHHcCCCceEEEeCCCCCH
Q 009196 322 ----YFEGKNRIDSLIADIGTWGASAVTVHGRTR-------QQRYSKLAD----WDYIYQCARKASDDLQVLGNGDIYSY 386 (540)
Q Consensus 322 ----~~e~~~~~~~la~~leeaGvdaItVHgRtr-------~q~y~g~ad----w~~I~~i~~~~~~~IPVIgNGdI~s~ 386 (540)
+-.+.++...++..+++.|++.+-+.|++. ++|.+..+. .++...++.... ..-|.++|+.++.
T Consensus 252 ~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~k-gt~v~a~g~~~t~ 330 (400)
T KOG0134|consen 252 EFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFK-GTVVYAGGGGRTR 330 (400)
T ss_pred hhhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhc-CcEEEecCCccCH
Confidence 111345677888899999999666655442 233333333 345556666663 3445578899999
Q ss_pred HHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCC
Q 009196 387 LDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH 423 (540)
Q Consensus 387 eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~ 423 (540)
+.+.++++. ...|+|.+||..+.||++..+++.+..
T Consensus 331 ~~~~eav~~-~~T~~ig~GR~f~anPDLp~rl~~~~~ 366 (400)
T KOG0134|consen 331 EAMVEAVKS-GRTDLIGYGRPFLANPDLPKRLLNGLP 366 (400)
T ss_pred HHHHHHHhc-CCceeEEecchhccCCchhHHHHhCCC
Confidence 999999996 889999999999999999999998754
No 73
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.15 E-value=9.8e-10 Score=116.30 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=144.7
Q ss_pred cccCcccCCcEEEccCCCCC------CHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecC-C
Q 009196 179 EKKLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG-A 251 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~vt------dlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G-~ 251 (540)
++-+.++.-|+++|||++.+ +...-+-|.+.|.-++.+-+.+..- .+ +.. ....+.++||+- .
T Consensus 51 ~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~------e~--ia~--~~~~~~~~Qly~~~ 120 (356)
T PF01070_consen 51 TFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASL------EE--IAA--ASGGPLWFQLYPPR 120 (356)
T ss_dssp EETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCH------HH--HHH--HCTSEEEEEEEGBS
T ss_pred eeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCH------HH--HHh--hccCCeEEEEEEec
Confidence 45577889999999998643 3566677778888777665543321 11 111 123789999975 4
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCccccc----CCc-----------------------------------cc--
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN----KGA-----------------------------------GS-- 290 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~----~G~-----------------------------------Gs-- 290 (540)
+.+......++++ .+|++.|=|+.-+|..-.+. .|+ +.
T Consensus 121 d~~~~~~~i~rAe-~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (356)
T PF01070_consen 121 DRELTRDLIRRAE-AAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAA 199 (356)
T ss_dssp SHHHHHHHHHHHH-HTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCH
T ss_pred CHHHHHHHHHHhh-cCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchh
Confidence 6677777777876 79999987765443210000 000 00
Q ss_pred --ccc---CCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHH
Q 009196 291 --CLL---TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIY 365 (540)
Q Consensus 291 --aLl---~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~ 365 (540)
.+. -++...-+-++.+++.+++||.||--+. .+-|+++.+.||++|.|++.-..|...+++-.+.+.
T Consensus 200 ~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~--------~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~ 271 (356)
T PF01070_consen 200 AARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLS--------PEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALP 271 (356)
T ss_dssp HHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-S--------HHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHhcccCCceEEEeccc--------HHHHHHHHhcCCCEEEecCCCcccCccccccccccH
Confidence 000 1333434558888888999999997653 244788999999999998776666667777889999
Q ss_pred HHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 366 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 366 ~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
++++.++.++|||+.|||.+..|+.+++. -||++|+|||..|.
T Consensus 272 ~i~~~~~~~~~i~~dgGir~g~Dv~kala--LGA~~v~igr~~l~ 314 (356)
T PF01070_consen 272 EIRAAVGDDIPIIADGGIRRGLDVAKALA--LGADAVGIGRPFLY 314 (356)
T ss_dssp HHHHHHTTSSEEEEESS--SHHHHHHHHH--TT-SEEEESHHHHH
T ss_pred HHHhhhcCCeeEEEeCCCCCHHHHHHHHH--cCCCeEEEccHHHH
Confidence 99998876899999999999999999998 79999999999873
No 74
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.15 E-value=4.1e-09 Score=109.76 Aligned_cols=191 Identities=14% Similarity=0.178 Sum_probs=134.2
Q ss_pred CcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhh-hhhcccCCC-eEEEEecCCcHHHHHHH
Q 009196 182 LIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA-LLRRHSSED-LFGVQICGAYPDTLART 259 (540)
Q Consensus 182 ~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~-ll~~~~~e~-p~~vQL~G~~p~~~a~A 259 (540)
++.|.-|++.+.|+++.|..+-++++++|.-.+.-+| ...+|. +++...... ++++- .|-.++++.++
T Consensus 30 ~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~---------~~E~~~sfvrk~k~~~L~v~~S-vG~t~e~~~r~ 99 (321)
T TIGR01306 30 KHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF---------DEESRIPFIKDMQERGLFASIS-VGVKACEYEFV 99 (321)
T ss_pred CcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEecC---------CHHHHHHHHHhccccccEEEEE-cCCCHHHHHHH
Confidence 6889999999999999999999999998754443332 222332 233222222 22222 25678889999
Q ss_pred HHHHHHhCC--CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHH
Q 009196 260 VELIDQQCT--VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 337 (540)
Q Consensus 260 A~~~~~~aG--~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~le 337 (540)
+.+++ +| .|.|=|-.. .| +...+.+.++.+++.++.|+.++--.+ ..+.|+.|.
T Consensus 100 ~~lv~--a~~~~d~i~~D~a--------hg-------~s~~~~~~i~~i~~~~p~~~vi~GnV~-------t~e~a~~l~ 155 (321)
T TIGR01306 100 TQLAE--EALTPEYITIDIA--------HG-------HSNSVINMIKHIKTHLPDSFVIAGNVG-------TPEAVRELE 155 (321)
T ss_pred HHHHh--cCCCCCEEEEeCc--------cC-------chHHHHHHHHHHHHhCCCCEEEEecCC-------CHHHHHHHH
Confidence 98875 35 576655322 12 346788889999988876754443232 246788999
Q ss_pred HcCCcEEEEe---ccc---ccCccCCCcCHH--HHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 338 TWGASAVTVH---GRT---RQQRYSKLADWD--YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 338 eaGvdaItVH---gRt---r~q~y~g~adw~--~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
++||++|.|+ ||+ +...-.+.++|. .|.++++.+ ++|||++|||.+..|+.++|. .|||+||+||.+-
T Consensus 156 ~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa--~GAd~Vmig~~~a 231 (321)
T TIGR01306 156 NAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIR--FGASMVMIGSLFA 231 (321)
T ss_pred HcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHH--cCCCEEeechhhc
Confidence 9999999998 442 332222334554 889999987 799999999999999999998 6999999997765
Q ss_pred h
Q 009196 410 I 410 (540)
Q Consensus 410 ~ 410 (540)
.
T Consensus 232 g 232 (321)
T TIGR01306 232 G 232 (321)
T ss_pred C
Confidence 4
No 75
>PLN02979 glycolate oxidase
Probab=99.10 E-value=7.1e-09 Score=109.32 Aligned_cols=241 Identities=12% Similarity=0.044 Sum_probs=161.2
Q ss_pred cccCcccCCcEEEccCCCC------CCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCC-
Q 009196 179 EKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA- 251 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~v------tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~- 251 (540)
++=+..+.-|+++||+... ++...-+-|.+.|.-++.|-+.+.. .+-+... ...+..+||+-.
T Consensus 62 ~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~s---------lEeIa~a-~~~~~wfQLY~~~ 131 (366)
T PLN02979 62 TVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSS---------VEEVAST-GPGIRFFQLYVYK 131 (366)
T ss_pred EECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCC---------HHHHHhc-cCCCeEEEEeecC
Confidence 3446678889999998642 3456667777788877766533221 1122222 345799999964
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccc----cCCc-----------------------ccc----c--cCCchH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGA-----------------------GSC----L--LTKPMR 298 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~----~~G~-----------------------Gsa----L--l~~p~~ 298 (540)
+.+...+..++++ .+||.+|=|..-+|..-.+ +.|+ +++ + .-++.+
T Consensus 132 Dr~~~~~ll~RA~-~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (366)
T PLN02979 132 NRNVVEQLVRRAE-RAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTL 210 (366)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCC
Confidence 5566666667776 7899998887666653111 0010 000 0 002222
Q ss_pred HHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEE
Q 009196 299 MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL 378 (540)
Q Consensus 299 l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVI 378 (540)
--+-|+.+++.+++||.||--.. .+-|.++.++|||+|.|.+.-..|....++-.+.+.++++.+..++|||
T Consensus 211 tW~dl~wlr~~~~~PvivKgV~~--------~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 211 SWKDVQWLQTITKLPILVKGVLT--------GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred CHHHHHHHHhccCCCEEeecCCC--------HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 23558888988999999997642 3457789999999999987765555555566778888888775479999
Q ss_pred EeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 009196 379 GNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 448 (540)
Q Consensus 379 gNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~ 448 (540)
+.|||.+..|+.++|. -|||+|+|||.+|.-- ...+.. -...-+++++.-+...+...|.
T Consensus 283 ~dGGIr~G~Di~KALA--LGAdaV~iGrp~L~~l-----a~~G~~---Gv~~~l~~l~~El~~~m~l~G~ 342 (366)
T PLN02979 283 LDGGVRRGTDVFKALA--LGASGIFIGRPVVFSL-----AAEGEA---GVRKVLQMLRDEFELTMALSGC 342 (366)
T ss_pred EeCCcCcHHHHHHHHH--cCCCEEEEcHHHHHHH-----HhcCHH---HHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998 7999999999987421 111111 1235567777777777776664
No 76
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.09 E-value=4.5e-09 Score=111.85 Aligned_cols=239 Identities=15% Similarity=0.129 Sum_probs=156.2
Q ss_pred cCcccCCcEEEccCCCC------CCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecC-CcH
Q 009196 181 KLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG-AYP 253 (540)
Q Consensus 181 ~~l~lknrliLAPM~~v------tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G-~~p 253 (540)
=+..+.-|+++||+... ++...-+-|.+.|.-++.|.+.+.. .+-+..+ .+.++.+||+- .+.
T Consensus 65 lG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~s---------lEeia~~-~~~~~wfQlY~~~Dr 134 (381)
T PRK11197 65 FGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCP---------IEEVAPA-IKRPMWFQLYVLRDR 134 (381)
T ss_pred CCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCC---------HHHHHhc-cCCCeEEEEEecCCH
Confidence 35677889999998632 4567777788888887776654322 1122233 34579999974 456
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccc----cCCcccc---------ccCCc------------------------
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGAGSC---------LLTKP------------------------ 296 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~----~~G~Gsa---------Ll~~p------------------------ 296 (540)
+...+..++++ .+||..|=|..-+|..-.+ +.|+-.. .+.+|
T Consensus 135 ~~~~~li~RA~-~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~ 213 (381)
T PRK11197 135 GFMRNALERAK-AAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGK 213 (381)
T ss_pred HHHHHHHHHHH-HcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCccccccccccc
Confidence 66677777887 7899999887777643211 0111000 00000
Q ss_pred -----------------hHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCc
Q 009196 297 -----------------MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 359 (540)
Q Consensus 297 -----------------~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~a 359 (540)
.+--+-|+.+++.++.||.||--+. .+-|..+.++||++|.|.+....|....++
T Consensus 214 ~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~s--------~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~ 285 (381)
T PRK11197 214 PTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILD--------PEDARDAVRFGADGIVVSNHGGRQLDGVLS 285 (381)
T ss_pred ccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecCC--------HHHHHHHHhCCCCEEEECCCCCCCCCCccc
Confidence 0001227778888899999997653 245778899999999997654444433344
Q ss_pred CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHH
Q 009196 360 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFA 439 (540)
Q Consensus 360 dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~ 439 (540)
-.+.+.++++.+..++|||+.|||.+..|+.++|. .|||+||+||.+|.--. ..+.. .....+++++.-+
T Consensus 286 t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa--LGA~~V~iGr~~l~~la-----~~G~~---gv~~~l~~l~~El 355 (381)
T PRK11197 286 SARALPAIADAVKGDITILADSGIRNGLDVVRMIA--LGADTVLLGRAFVYALA-----AAGQA---GVANLLDLIEKEM 355 (381)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH--cCcCceeEhHHHHHHHH-----hccHH---HHHHHHHHHHHHH
Confidence 56777888877644699999999999999999998 79999999999873211 11111 1234566666666
Q ss_pred HHHHHHhcC
Q 009196 440 RFGLEHWGS 448 (540)
Q Consensus 440 ~~~le~~g~ 448 (540)
+..+...|.
T Consensus 356 ~~~m~l~G~ 364 (381)
T PRK11197 356 RVAMTLTGA 364 (381)
T ss_pred HHHHHHHCC
Confidence 666666664
No 77
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.09 E-value=3.5e-09 Score=112.78 Aligned_cols=210 Identities=14% Similarity=0.036 Sum_probs=145.2
Q ss_pred ccCcccCCcEEEccCCCC------CCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCC-c
Q 009196 180 KKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA-Y 252 (540)
Q Consensus 180 ~~~l~lknrliLAPM~~v------tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~-~ 252 (540)
+=+..+.-|+++||+... ++...-+-|.+.|.-++.|-+.+.. .+-+.....+.+..+||+-. +
T Consensus 79 llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~s---------lEeIa~~~~~~~~wfQlY~~~d 149 (383)
T cd03332 79 LFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSS---------IEDVAAAAGDAPRWFQLYWPKD 149 (383)
T ss_pred eCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCC---------HHHHHhhcCCCCcEEEeeCCCC
Confidence 336678899999998642 3466777778888888877665421 11222232345789999976 5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCccccc----CCc---------------------------------------c
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVN----KGA---------------------------------------G 289 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~----~G~---------------------------------------G 289 (540)
.+...+..++++ .+||..|=|..-.|..-.+. .++ +
T Consensus 150 r~~~~~ll~RA~-~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (383)
T cd03332 150 DDLTESLLRRAE-KAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAV 228 (383)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhH
Confidence 666666677776 78999987764443211100 000 0
Q ss_pred cccc---CCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHH
Q 009196 290 SCLL---TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQ 366 (540)
Q Consensus 290 saLl---~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~ 366 (540)
+..+ -++.+--+-++.+++.++.||.+|--+. .+-|..+.+.|+|+|.|.+....|...+++-.+.+.+
T Consensus 229 ~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV~~--------~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~e 300 (383)
T cd03332 229 ARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGILH--------PDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPE 300 (383)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecCCC--------HHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHH
Confidence 0000 0222223567778888899999993221 3457788899999999976555555556677888999
Q ss_pred HHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 367 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 367 i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+++.+..++|||+.|||.+..|+.++|. .|||+|+|||.+|
T Consensus 301 i~~~~~~~~~vi~dGGIr~G~Dv~KALa--LGA~~v~iGr~~l 341 (383)
T cd03332 301 IVEAVGDRLTVLFDSGVRTGADIMKALA--LGAKAVLIGRPYA 341 (383)
T ss_pred HHHHhcCCCeEEEeCCcCcHHHHHHHHH--cCCCEEEEcHHHH
Confidence 9988865699999999999999999997 7999999999998
No 78
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.08 E-value=2.4e-09 Score=106.73 Aligned_cols=154 Identities=18% Similarity=0.288 Sum_probs=122.3
Q ss_pred CCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC
Q 009196 241 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 320 (540)
Q Consensus 241 e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~ 320 (540)
..+.-||+.|.= .....+..++ .+|++.|=| |+.-.++|+++.++++..-..+ -|.+-.|.
T Consensus 73 ~~~~~vQvGGGI-Rs~~~v~~ll--~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~ri--vv~lD~r~ 133 (241)
T COG0106 73 ATDVPVQVGGGI-RSLEDVEALL--DAGVARVII--------------GTAAVKNPDLVKELCEEYGDRI--VVALDARD 133 (241)
T ss_pred hCCCCEEeeCCc-CCHHHHHHHH--HCCCCEEEE--------------ecceecCHHHHHHHHHHcCCcE--EEEEEccC
Confidence 345668998863 2233333444 479888877 6777899999999999987543 33333343
Q ss_pred ------CCCCChh-HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH
Q 009196 321 ------GYFEGKN-RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK 393 (540)
Q Consensus 321 ------G~~e~~~-~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l 393 (540)
||.+... ++.++++++++.|+..|.+|.-++++..+| .|++.+.++++.+ ++|||++|||.|.+|+..+.
T Consensus 134 g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G-~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~ 210 (241)
T COG0106 134 GKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSG-PNVDLVKELAEAV--DIPVIASGGVSSLDDIKALK 210 (241)
T ss_pred CccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCC-CCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHH
Confidence 7887655 889999999999999999999999999888 7999999999999 79999999999999998855
Q ss_pred hcCC-CcCeeeecHHHHhCCCchHHH
Q 009196 394 SDCP-ELASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 394 ~~~~-gaDgVMIGRgaL~nPwif~ei 418 (540)
. . |+.||.|||+++..-.-+.+.
T Consensus 211 ~--~~G~~GvIvG~ALy~g~~~l~ea 234 (241)
T COG0106 211 E--LSGVEGVIVGRALYEGKFTLEEA 234 (241)
T ss_pred h--cCCCcEEEEehHHhcCCCCHHHH
Confidence 4 5 899999999999876544443
No 79
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.07 E-value=4e-09 Score=111.57 Aligned_cols=235 Identities=12% Similarity=0.025 Sum_probs=158.9
Q ss_pred CcccCCcEEEccCCC------CCCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHH
Q 009196 182 LIDFREKLYLAPLTT------VGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDT 255 (540)
Q Consensus 182 ~l~lknrliLAPM~~------vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~ 255 (540)
+..+.-|+++||+.. -++...-+-|.+.|.-++.|-+.+..- .+ +... .+.++.+||+-.+.+.
T Consensus 60 G~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~si------Ee---va~a-~~~~~wfQLY~~~r~~ 129 (361)
T cd04736 60 GKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSI------ED---VARQ-ADGDLWFQLYVVHREL 129 (361)
T ss_pred CccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCH------HH---HHhh-cCCCeEEEEEecCHHH
Confidence 567788999999743 245777788888898888877654321 11 2222 2357999999988666
Q ss_pred HHHHHHHHHHhCCCCEEEecCCCCCccccc----CCc---------------------------------------ccc-
Q 009196 256 LARTVELIDQQCTVDFIDINMGCPIDIVVN----KGA---------------------------------------GSC- 291 (540)
Q Consensus 256 ~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~----~G~---------------------------------------Gsa- 291 (540)
.....++++ .+||..|=|..-+|..-.+. .|+ +..
T Consensus 130 ~~~ll~RA~-~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~ 208 (361)
T cd04736 130 AELLVKRAL-AAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDV 208 (361)
T ss_pred HHHHHHHHH-HcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccch
Confidence 666667777 78999997776555421110 000 000
Q ss_pred ------c--cCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHH
Q 009196 292 ------L--LTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY 363 (540)
Q Consensus 292 ------L--l~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~ 363 (540)
+ .-++.+.-+.|+.+++.++.||.+|--+ ..+-+.++.++|+|+|.|++....|....++..+.
T Consensus 209 ~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV~--------~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~ 280 (361)
T cd04736 209 EVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIV--------TAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEA 280 (361)
T ss_pred hhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecCC--------CHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHH
Confidence 0 0123334457888899899999999432 13457788899999999976555555555667889
Q ss_pred HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 009196 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGL 443 (540)
Q Consensus 364 I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~l 443 (540)
+.++++.+ ++|||+.|||.+..|+.++|. .|||+|||||+.|.--... +.. -...-+++|+.-++..+
T Consensus 281 L~ei~~~~--~~~vi~dGGIr~g~Dv~KALa--LGA~aV~iGr~~l~~la~~-----G~~---gv~~~l~~l~~el~~~m 348 (361)
T cd04736 281 LAEIVAAT--YKPVLIDSGIRRGSDIVKALA--LGANAVLLGRATLYGLAAR-----GEA---GVSEVLRLLKEEIDRTL 348 (361)
T ss_pred HHHHHHHh--CCeEEEeCCCCCHHHHHHHHH--cCCCEEEECHHHHHHHHhc-----CHH---HHHHHHHHHHHHHHHHH
Confidence 99999988 699999999999999999998 7999999999987432111 110 12334566666666555
Q ss_pred HHhc
Q 009196 444 EHWG 447 (540)
Q Consensus 444 e~~g 447 (540)
...|
T Consensus 349 ~l~G 352 (361)
T cd04736 349 ALIG 352 (361)
T ss_pred HHhC
Confidence 5444
No 80
>PLN02535 glycolate oxidase
Probab=99.06 E-value=2e-08 Score=106.40 Aligned_cols=241 Identities=15% Similarity=0.062 Sum_probs=157.9
Q ss_pred cccCcccCCcEEEccCCCC------CCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCC-
Q 009196 179 EKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA- 251 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~v------tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~- 251 (540)
++=+..+.-|+++||+... +....-+-|.+.|.-++.|-+.+. + ..+ +... .+.+..+||+-.
T Consensus 65 ~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~-s-----lEe---va~~-~~~~~wfQlY~~~ 134 (364)
T PLN02535 65 TILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASC-T-----VEE---VASS-CNAVRFLQLYVYK 134 (364)
T ss_pred EECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccC-C-----HHH---HHhc-CCCCeEEEEeccC
Confidence 3346678889999997642 345566667777877776555322 1 111 2222 245799999974
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccc----cCCc--------------------ccc----c--cCCchHHHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGA--------------------GSC----L--LTKPMRMKG 301 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~----~~G~--------------------Gsa----L--l~~p~~l~e 301 (540)
+.+...+..++++ .+||..|=|..-+|..-.+ +.|+ ++. + .-++.+--+
T Consensus 135 dr~~~~~ll~RA~-~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~ 213 (364)
T PLN02535 135 RRDIAAQLVQRAE-KNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWK 213 (364)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHH
Confidence 4666667777877 7899998777666652211 0010 000 0 002233335
Q ss_pred HHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC
Q 009196 302 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 381 (540)
Q Consensus 302 Iv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG 381 (540)
-++.+++.++.||.||--+.. +-++.+.++|+|+|.|.+.-..|...+++-...+.++++.+..++|||+.|
T Consensus 214 ~i~~lr~~~~~PvivKgV~~~--------~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dG 285 (364)
T PLN02535 214 DIEWLRSITNLPILIKGVLTR--------EDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDG 285 (364)
T ss_pred HHHHHHhccCCCEEEecCCCH--------HHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeC
Confidence 678888888999999954422 337888999999999976543333334445677888887764469999999
Q ss_pred CCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 009196 382 DIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 448 (540)
Q Consensus 382 dI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~ 448 (540)
||.+..|+.++|. .|||+|+|||++|..+....+- .....+++++.-+...+...|.
T Consensus 286 GIr~g~Dv~KALa--lGA~aV~vGr~~l~~l~~~g~~--------gv~~~l~~l~~el~~~m~l~G~ 342 (364)
T PLN02535 286 GVRRGTDVFKALA--LGAQAVLVGRPVIYGLAAKGED--------GVRKVIEMLKDELEITMALSGC 342 (364)
T ss_pred CCCCHHHHHHHHH--cCCCEEEECHHHHhhhhhccHH--------HHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999998 7999999999999765532211 1234455666666666666664
No 81
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.05 E-value=7e-10 Score=111.72 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++++.+++.|++.|+||.+++.+.+. +.+|+.++++++.+ ++||+++|||.|.+|+.+++. .||++|++|+
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~-~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~--~Ga~~Viigt 104 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR-DTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLR--AGADKVSINS 104 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC-cchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHH--cCCCEEEECh
Confidence 357889999999999999999999876665 58999999999998 799999999999999999887 7999999999
Q ss_pred HHHhCCCchHHHHhc
Q 009196 407 GALIKPWIFTEIKEQ 421 (540)
Q Consensus 407 gaL~nPwif~eik~~ 421 (540)
+++.+|++|.++.+.
T Consensus 105 ~~l~~p~~~~ei~~~ 119 (253)
T PRK02083 105 AAVANPELISEAADR 119 (253)
T ss_pred hHhhCcHHHHHHHHH
Confidence 999999999999764
No 82
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.03 E-value=9.6e-09 Score=108.84 Aligned_cols=240 Identities=13% Similarity=0.056 Sum_probs=160.7
Q ss_pred ccCcccCCcEEEccCCCC------CCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCC-c
Q 009196 180 KKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA-Y 252 (540)
Q Consensus 180 ~~~l~lknrliLAPM~~v------tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~-~ 252 (540)
+=+..+.-|+++||+... ++...-+-|.+.|.-++.|-+.+.. ..+ +... ...+..+||+-. +
T Consensus 64 ~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~s------lEe---va~~-~~~~~wfQlY~~~D 133 (367)
T PLN02493 64 VLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSS------VEE---VAST-GPGIRFFQLYVYKN 133 (367)
T ss_pred ECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCC------HHH---HHhc-CCCCcEEEEeecCC
Confidence 346678889999998642 3466777788888888876644321 111 2222 245789999964 5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCcccc----cCCc-----------------------cccc------cCCchHH
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGA-----------------------GSCL------LTKPMRM 299 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~----~~G~-----------------------GsaL------l~~p~~l 299 (540)
.+...+..++++ .+||..|=|..-+|..-.+ +.++ +..+ .-++.+-
T Consensus 134 r~~~~~li~RA~-~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 212 (367)
T PLN02493 134 RNVVEQLVRRAE-RAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLS 212 (367)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCC
Confidence 555666667776 7899998776655543111 0010 0000 0012222
Q ss_pred HHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEE
Q 009196 300 KGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLG 379 (540)
Q Consensus 300 ~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIg 379 (540)
=+-++.+++.++.||.||--.. .+-+.++.++|||+|.|.+.-..|....++-.+.+.++++.+..++|||+
T Consensus 213 W~di~wlr~~~~~PiivKgV~~--------~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~ 284 (367)
T PLN02493 213 WKDVQWLQTITKLPILVKGVLT--------GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 284 (367)
T ss_pred HHHHHHHHhccCCCEEeecCCC--------HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 2457788888899999996642 34577899999999999876555555555667888888887755799999
Q ss_pred eCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 009196 380 NGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 448 (540)
Q Consensus 380 NGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~ 448 (540)
.|||.+..|+.++|. -|||+|+|||.+|.--.. .+.. -...-+++++.-+...+...|.
T Consensus 285 dGGIr~G~Dv~KALA--LGA~aV~iGr~~l~~l~~-----~G~~---gv~~~l~~l~~el~~~m~l~G~ 343 (367)
T PLN02493 285 DGGVRRGTDVFKALA--LGASGIFIGRPVVFSLAA-----EGEA---GVRKVLQMLRDEFELTMALSGC 343 (367)
T ss_pred eCCcCcHHHHHHHHH--cCCCEEEEcHHHHHHHHh-----cCHH---HHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998 799999999998742211 1111 1234567777777777777764
No 83
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.02 E-value=1.1e-09 Score=109.37 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++++.+++.|++.|++|.+++. .+.++.+++.++++++.+ ++||+++|||.|.+|+.+++. .|||+|++||
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~--~G~~~v~ig~ 101 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITAS-SEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLR--AGADKVSINS 101 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcc-cccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH--cCCceEEECc
Confidence 36789999999999999999999874 345668999999999998 799999999999999999886 6899999999
Q ss_pred HHHhCCCchHHHHh
Q 009196 407 GALIKPWIFTEIKE 420 (540)
Q Consensus 407 gaL~nPwif~eik~ 420 (540)
+++.+|+++.++.+
T Consensus 102 ~~~~~p~~~~~i~~ 115 (243)
T cd04731 102 AAVENPELIREIAK 115 (243)
T ss_pred hhhhChHHHHHHHH
Confidence 99999999999976
No 84
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.95 E-value=2.2e-08 Score=102.48 Aligned_cols=226 Identities=14% Similarity=0.123 Sum_probs=145.7
Q ss_pred cCcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhh--------------------------hh
Q 009196 181 KLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEW--------------------------AL 234 (540)
Q Consensus 181 ~~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~--------------------------~l 234 (540)
=+-.|.|++.+|-=..-.....-.|.. .|++++.+. +++++-|.....- ..
T Consensus 89 ~g~~f~NPiglAAGfdk~~eaidgL~~-~gfG~ieig--SvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~r 165 (398)
T KOG1436|consen 89 LGRKFSNPIGLAAGFDKNAEAIDGLAN-SGFGFIEIG--SVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQR 165 (398)
T ss_pred hhhhccCchhhhhccCcchHHHHHHHh-CCCceEEec--ccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHH
Confidence 356889999999755544455555554 677776544 3444433321110 01
Q ss_pred h------hcccCCCeEEEEecCCc--HHHHHHHHHHHHHhC--CCCEEEecCCCCCcccccCCccccccCCchHHHHHHH
Q 009196 235 L------RRHSSEDLFGVQICGAY--PDTLARTVELIDQQC--TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 304 (540)
Q Consensus 235 l------~~~~~e~p~~vQL~G~~--p~~~a~AA~~~~~~a--G~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~ 304 (540)
+ +..+.-.+++|.|.-+. .+....-++-+. .. -.|.+.||.+||... |---|+.-..+.+++.
T Consensus 166 l~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~-~~g~~adylviNvSsPNtp------Glr~lq~k~~L~~ll~ 238 (398)
T KOG1436|consen 166 LRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVR-VFGPFADYLVINVSSPNTP------GLRSLQKKSDLRKLLT 238 (398)
T ss_pred HHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhh-hcccccceEEEeccCCCCc------chhhhhhHHHHHHHHH
Confidence 1 11122345677776443 333333333333 22 258899999999853 2222333333344443
Q ss_pred Hhcccc-------cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc--------------cCccCCCc----
Q 009196 305 ATSGTV-------DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR--------------QQRYSKLA---- 359 (540)
Q Consensus 305 av~~~v-------~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr--------------~q~y~g~a---- 359 (540)
.+..+. ..|+.+|+-... ...+..+++..+.+.++|.+++.+-|- .++.+|++
T Consensus 239 ~v~~a~~~~~~~~~~pvl~kiapDL--~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~ 316 (398)
T KOG1436|consen 239 KVVQARDKLPLGKKPPVLVKIAPDL--SEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPI 316 (398)
T ss_pred HHHHHHhccccCCCCceEEEeccch--hHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchh
Confidence 332221 359999998754 345778888888999999999887541 22334433
Q ss_pred CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh-CCCchHHHHh
Q 009196 360 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKE 420 (540)
Q Consensus 360 dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwif~eik~ 420 (540)
....++++.+.+...|||||+|||.|.+||.+.+. .||..|+|+.++-. -|-||.+|+.
T Consensus 317 st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~Ekir--aGASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436|consen 317 STNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIR--AGASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred HHHHHHHHHHhccCCCceEeecCccccHhHHHHHh--cCchHHHHHHHHhhcCchhHHHHHH
Confidence 36678888888777899999999999999999987 79999999999855 6999999985
No 85
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.90 E-value=8.5e-08 Score=96.60 Aligned_cols=161 Identities=13% Similarity=0.130 Sum_probs=119.4
Q ss_pred hhhhcccCCCeEEEEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc
Q 009196 233 ALLRRHSSEDLFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310 (540)
Q Consensus 233 ~ll~~~~~e~p~~vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v 310 (540)
.+++.-....++.+|+.|. +.+++ ..++ .+|+|-|=| |+...++|+++.++.+...+.+
T Consensus 64 ~~i~~i~~~~~~~v~vgGGIrs~e~~---~~~l--~~Ga~~vvi--------------gT~a~~~p~~~~~~~~~~g~~i 124 (243)
T TIGR01919 64 MMLEEVVKLLVVVEELSGGRRDDSSL---RAAL--TGGRARVNG--------------GTAALENPWWAAAVIRYGGDIV 124 (243)
T ss_pred HHHHHHHHHCCCCEEEcCCCCCHHHH---HHHH--HcCCCEEEE--------------CchhhCCHHHHHHHHHHccccE
Confidence 3443333334466898875 44433 2233 368888766 5677789999999988764432
Q ss_pred cccEEEEec----------CCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEe
Q 009196 311 DKPITIKVR----------TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN 380 (540)
Q Consensus 311 ~iPVtVKiR----------~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgN 380 (540)
-+++-.| .||.+......++++.+++.|+..|.++.-.+.+..+| .|++.++++++.+ ++|||++
T Consensus 125 --vvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G-~d~~l~~~l~~~~--~~pvias 199 (243)
T TIGR01919 125 --AVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGG-PNELLLEVVAART--DAIVAAS 199 (243)
T ss_pred --EEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCC-cCHHHHHHHHhhC--CCCEEEE
Confidence 2333222 36766566789999999999999999999999888887 7999999999987 7999999
Q ss_pred CCCCCHHHHHHH--HhcCCCcCeeeecHHHHhCCCchHHH
Q 009196 381 GDIYSYLDWNKH--KSDCPELASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 381 GdI~s~eDa~~~--l~~~~gaDgVMIGRgaL~nPwif~ei 418 (540)
|||.|.+|+.++ +.. .|+++|++|++++..---+++.
T Consensus 200 GGv~s~eDl~~l~~l~~-~Gv~gvivg~Al~~g~i~~~~~ 238 (243)
T TIGR01919 200 GGSSLLDDLRAIKYLDE-GGVSVAIGGKLLYARFFTLEAA 238 (243)
T ss_pred CCcCCHHHHHHHHhhcc-CCeeEEEEhHHHHcCCCCHHHH
Confidence 999999999885 323 6999999999998776555543
No 86
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.89 E-value=1.1e-07 Score=101.95 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=95.8
Q ss_pred CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhH
Q 009196 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNR 328 (540)
Q Consensus 250 G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~ 328 (540)
|..++.+.++..++ ++|+|.|=|-++.+ +...+.++++.+++.+ +.+|.++--.
T Consensus 149 g~~~~~~~~v~~lv--~aGvDvI~iD~a~g---------------~~~~~~~~v~~ik~~~p~~~vi~g~V~-------- 203 (404)
T PRK06843 149 SIDIDTIERVEELV--KAHVDILVIDSAHG---------------HSTRIIELVKKIKTKYPNLDLIAGNIV-------- 203 (404)
T ss_pred eCCHHHHHHHHHHH--hcCCCEEEEECCCC---------------CChhHHHHHHHHHhhCCCCcEEEEecC--------
Confidence 34567777766666 47999988854442 2456778899998877 6777775432
Q ss_pred HHHHHHHHHHcCCcEEEEeccc-------ccCccCCCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 329 IDSLIADIGTWGASAVTVHGRT-------RQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRt-------r~q~y~g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
..+-++.+.++|+|+|.+ |-+ +...-.+.+++..+..|++.+. .++|||+.|+|.++.|+.++|. .|||
T Consensus 204 T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALa--lGA~ 280 (404)
T PRK06843 204 TKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIA--AGAD 280 (404)
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH--cCCC
Confidence 245678888999999986 321 1111124456776655555431 1699999999999999999998 7999
Q ss_pred eeeecHHHHhCC
Q 009196 401 SCMIARGALIKP 412 (540)
Q Consensus 401 gVMIGRgaL~nP 412 (540)
+||||+.+..-.
T Consensus 281 aVmvGs~~agt~ 292 (404)
T PRK06843 281 SVMIGNLFAGTK 292 (404)
T ss_pred EEEEcceeeeee
Confidence 999999887743
No 87
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.88 E-value=2.4e-08 Score=98.45 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=92.7
Q ss_pred HHHHHhCCCCEEEecCCCCCcccccCCccccccCCch--HHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHH
Q 009196 261 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPM--RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT 338 (540)
Q Consensus 261 ~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~--~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~lee 338 (540)
+.+. ++|+|+|-++..+ +.+|. .+.++++.+++..++|+.+.+.. .+.+..+.+
T Consensus 86 ~~a~-~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t---------~~ea~~a~~ 141 (219)
T cd04729 86 DALA-AAGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIST---------LEEALNAAK 141 (219)
T ss_pred HHHH-HcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECCC---------HHHHHHHHH
Confidence 4444 5799999887432 11232 66778877776556888875432 233577888
Q ss_pred cCCcEEEE--ecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchH
Q 009196 339 WGASAVTV--HGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 416 (540)
Q Consensus 339 aGvdaItV--HgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~ 416 (540)
+|+++|.+ ||++..+......+|++++++++.+ ++||+++|||.+++++.+++. .|||+|++|++++ +++.+.
T Consensus 142 ~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~--~GadgV~vGsal~-~~~~~~ 216 (219)
T cd04729 142 LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALE--LGADAVVVGSAIT-RPEHIT 216 (219)
T ss_pred cCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHH--CCCCEEEEchHHh-ChHhHh
Confidence 99999965 5666544444456899999999988 799999999999999999887 6899999999864 444433
No 88
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.87 E-value=2.5e-07 Score=87.89 Aligned_cols=148 Identities=13% Similarity=-0.028 Sum_probs=114.5
Q ss_pred CCeEEEEecCCc----HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccE
Q 009196 241 EDLFGVQICGAY----PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPI 314 (540)
Q Consensus 241 e~p~~vQL~G~~----p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPV 314 (540)
..|+++++.+.. .+...+.++.+. ++|+|+|.+. +|... ..-.+.+.+.+.++.+.+.+ ++|+
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~-~~Gad~i~v~--~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~pv 116 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAI-DLGADEIDVV--INIGS--------LKEGDWEEVLEEIAAVVEAADGGLPL 116 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHH-HcCCCEEEEe--ccHHH--------HhCCCHHHHHHHHHHHHHHhcCCceE
Confidence 478899999988 888888888887 7899999984 22210 01115788888888888874 8999
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 009196 315 TIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 394 (540)
Q Consensus 315 tVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 394 (540)
.+..+.+..-+.+...++++.+.+.|+++|..+... +.+..++..+.++++.++.++||+..||+.+++.+..++.
T Consensus 117 ~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~----~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~ 192 (201)
T cd00945 117 KVILETRGLKTADEIAKAARIAAEAGADFIKTSTGF----GGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIE 192 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHH
Confidence 999998765334567777777889999999876422 2345689999999988743589999999999999999887
Q ss_pred cCCCcCeeeec
Q 009196 395 DCPELASCMIA 405 (540)
Q Consensus 395 ~~~gaDgVMIG 405 (540)
.||+++++|
T Consensus 193 --~Ga~g~~~g 201 (201)
T cd00945 193 --AGADGIGTS 201 (201)
T ss_pred --hccceeecC
Confidence 699999876
No 89
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.86 E-value=1.5e-08 Score=100.26 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccC-CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYS-KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~-g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+..++|+.+++.|++.|+||.+++. +. ...++++++++++.+ ++||+++|+|.+++++.+++. .|||.|+||
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~--~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~--~Gad~vvig 102 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGA--KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLD--LGVSRVIIG 102 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcc--ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHH--cCCCEEEEC
Confidence 46789999999999999999988753 33 457899999999998 699999999999999999886 789999999
Q ss_pred HHHHhCCCchHHHHhc
Q 009196 406 RGALIKPWIFTEIKEQ 421 (540)
Q Consensus 406 RgaL~nPwif~eik~~ 421 (540)
++++.+|+++.++.+.
T Consensus 103 s~~l~dp~~~~~i~~~ 118 (234)
T cd04732 103 TAAVKNPELVKELLKE 118 (234)
T ss_pred chHHhChHHHHHHHHH
Confidence 9999999999998764
No 90
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.86 E-value=4.4e-09 Score=108.42 Aligned_cols=179 Identities=15% Similarity=0.219 Sum_probs=132.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHH
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~ 330 (540)
.+-..|.+.+...+ ++|.|.+|+|+.||+.. ..+|+|.++-+.|..+.+|...|+..+.+|+.-|+...+.+ ..
T Consensus 215 ynk~~w~el~d~~e-qag~d~lE~nlscphgm-~ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd----~r 288 (471)
T KOG1799|consen 215 YNKKCWMELNDSGE-QAGQDDLETNLSCPHGM-CERGMGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITD----KR 288 (471)
T ss_pred hhhhhHHHHhhhHH-hhcccchhccCCCCCCC-ccccccceeccChhhhHHHhhhhhhccccccccccCCCccc----cc
Confidence 44566778888876 79999999999999985 56799999999999999999999999999999999987654 34
Q ss_pred HHHHHHHHcCCcEEE---------------------EecccccCccCCCc----CHHHHHHHHHHcCCCceEEEeCCCCC
Q 009196 331 SLIADIGTWGASAVT---------------------VHGRTRQQRYSKLA----DWDYIYQCARKASDDLQVLGNGDIYS 385 (540)
Q Consensus 331 ~la~~leeaGvdaIt---------------------VHgRtr~q~y~g~a----dw~~I~~i~~~~~~~IPVIgNGdI~s 385 (540)
++++.....|+..|+ +.+|+..++|++.| .+..+..|++... ..|+.|.|||.+
T Consensus 289 evar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt 367 (471)
T KOG1799|consen 289 EVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVET 367 (471)
T ss_pred ccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCccc
Confidence 556666666666653 23556666776654 3445566666665 689999999999
Q ss_pred HHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh
Q 009196 386 YLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHW 446 (540)
Q Consensus 386 ~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~ 446 (540)
.+|+.+++. .|+..|.|..|.+..-+ .-++. -..|-.++++.|---.++.|
T Consensus 368 ~~~~~~Fil--~Gs~~vQVCt~V~~~~~--~~V~~------~Ca~LK~~m~~~~~~ti~~~ 418 (471)
T KOG1799|consen 368 GYDAAEFIL--LGSNTVQVCTGVMMHGY--GHVKT------LCAELKDFMKQHNFSTIEEF 418 (471)
T ss_pred ccchhhHhh--cCCcHhhhhhHHHhcCc--chHHH------HHHHHHHHHHHcCchhhhhc
Confidence 999999987 79999999999876543 22221 13455555555543345555
No 91
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.84 E-value=9.9e-08 Score=98.97 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=115.2
Q ss_pred ccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEE
Q 009196 238 HSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITI 316 (540)
Q Consensus 238 ~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtV 316 (540)
.....|+..|+++.+++.+.+.++.+. +.||+.|.||+|. +++...++|+++++++ ++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~v 182 (316)
T cd03319 120 APRPLETDYTISIDTPEAMAAAAKKAA-KRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRV 182 (316)
T ss_pred CCCCceeEEEEeCCCHHHHHHHHHHHH-HcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEE
Confidence 334567778999999999988888776 5699999999763 2355667888888877 488999
Q ss_pred EecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 009196 317 KVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 396 (540)
Q Consensus 317 KiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 396 (540)
+.+.+|+ ..++.++++.|++.|+.+| ++.+. +.+|+.++++++.+ ++||++++.+++++++.++++.
T Consensus 183 D~n~~~~--~~~A~~~~~~l~~~~l~~i-------EeP~~-~~d~~~~~~L~~~~--~ipIa~~E~~~~~~~~~~~~~~- 249 (316)
T cd03319 183 DANQGWT--PEEAVELLRELAELGVELI-------EQPVP-AGDDDGLAYLRDKS--PLPIMADESCFSAADAARLAGG- 249 (316)
T ss_pred eCCCCcC--HHHHHHHHHHHHhcCCCEE-------ECCCC-CCCHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHhc-
Confidence 9999996 3789999999999999888 56654 47899999999988 7999999999999999999886
Q ss_pred CCcCeeeec
Q 009196 397 PELASCMIA 405 (540)
Q Consensus 397 ~gaDgVMIG 405 (540)
.++|.|++-
T Consensus 250 ~~~d~v~~~ 258 (316)
T cd03319 250 GAYDGINIK 258 (316)
T ss_pred CCCCEEEEe
Confidence 899999875
No 92
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.84 E-value=2.9e-07 Score=95.93 Aligned_cols=205 Identities=13% Similarity=0.142 Sum_probs=137.8
Q ss_pred CCCCCCCcccccCcccCCcEEEccCCCCCCHHHHHHHHHhCC-CEEEeccceechhccCChhhhh-hhhc-ccC-CCeEE
Q 009196 170 DGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWA-LLRR-HSS-EDLFG 245 (540)
Q Consensus 170 ~~~~~~~p~e~~~l~lknrliLAPM~~vtdlpfR~l~~~~Ga-dl~~TEmi~a~~l~~g~~~e~~-ll~~-~~~-e~p~~ 245 (540)
|..+.|.+..-+.+.|+-|++-|.|-++++..+-....++|. .++ =-+. ...+|. +++. ++. ...+.
T Consensus 29 dl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~--------~~e~~~~~v~~~~~~~~~~~~ 99 (343)
T TIGR01305 29 ELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAI-HKHY--------SVDEWKAFATNSSPDCLQNVA 99 (343)
T ss_pred eeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEE-eeCC--------CHHHHHHHHHhhcccccceEE
Confidence 344556555556788899999999999999988766666653 332 1111 112232 2322 221 22233
Q ss_pred EEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCC
Q 009196 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG 325 (540)
Q Consensus 246 vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~ 325 (540)
+. .|-.++++.++..+++...++|.|=|.... | +.+.+.+.|+.+++.+.-+..+|--..
T Consensus 100 vs-vG~~~~d~er~~~L~~a~~~~d~iviD~Ah--------G-------hs~~~i~~ik~ir~~~p~~~viaGNV~---- 159 (343)
T TIGR01305 100 VS-SGSSDNDLEKMTSILEAVPQLKFICLDVAN--------G-------YSEHFVEFVKLVREAFPEHTIMAGNVV---- 159 (343)
T ss_pred EE-eccCHHHHHHHHHHHhcCCCCCEEEEECCC--------C-------cHHHHHHHHHHHHhhCCCCeEEEeccc----
Confidence 42 366788899998888632368988775322 2 356788899999998855555554332
Q ss_pred hhHHHHHHHHHHHcCCcEEEEe------cccccCccCCCcCHHHHHHHHHHcCC-CceEEEeCCCCCHHHHHHHHhcCCC
Q 009196 326 KNRIDSLIADIGTWGASAVTVH------GRTRQQRYSKLADWDYIYQCARKASD-DLQVLGNGDIYSYLDWNKHKSDCPE 398 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVH------gRtr~q~y~g~adw~~I~~i~~~~~~-~IPVIgNGdI~s~eDa~~~l~~~~g 398 (540)
..+-++.|.++|||+|.|. ..||...-.+.+.+..+.+|++.+.. ++|||+-|||.+.-|+.++|. .|
T Consensus 160 ---T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA--~G 234 (343)
T TIGR01305 160 ---TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFG--AG 234 (343)
T ss_pred ---CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHH--cC
Confidence 2355778889999999875 22333333344678889999887754 699999999999999999998 79
Q ss_pred cCeeeecHHH
Q 009196 399 LASCMIARGA 408 (540)
Q Consensus 399 aDgVMIGRga 408 (540)
||+||+|.-+
T Consensus 235 Ad~VMlG~ll 244 (343)
T TIGR01305 235 ADFVMLGGMF 244 (343)
T ss_pred CCEEEECHhh
Confidence 9999999333
No 93
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.80 E-value=1.9e-08 Score=101.62 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++|+.+++.|++.|+++..++.+. ....+++.++++++.+ ++||++.|||.|.+|+.+++. .||+.|+||+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~-~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~--~Ga~~vivgt 104 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE-GRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLR--AGADKVSINT 104 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc-cChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHH--cCCCEEEECh
Confidence 3678999999999999999999987644 4457999999999998 799999999999999999887 7999999999
Q ss_pred HHHhCCCchHHHHh
Q 009196 407 GALIKPWIFTEIKE 420 (540)
Q Consensus 407 gaL~nPwif~eik~ 420 (540)
+++.+|+++.++.+
T Consensus 105 ~~~~~p~~~~~~~~ 118 (254)
T TIGR00735 105 AAVKNPELIYELAD 118 (254)
T ss_pred hHhhChHHHHHHHH
Confidence 99999999999975
No 94
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.78 E-value=2e-07 Score=94.60 Aligned_cols=147 Identities=11% Similarity=0.079 Sum_probs=113.5
Q ss_pred CeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCC----chHHHHHHHHh-cccccccEEE
Q 009196 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTK----PMRMKGIIEAT-SGTVDKPITI 316 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~----p~~l~eIv~av-~~~v~iPVtV 316 (540)
.++.+|+.|.-. . +.++.+- .+|++-|=|| +...++ |+++.++++.. .+.+-+-+-+
T Consensus 82 ~~~~vqvGGGIR-~--e~i~~~l-~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~ 143 (262)
T PLN02446 82 YPGGLQVGGGVN-S--ENAMSYL-DAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSC 143 (262)
T ss_pred CCCCEEEeCCcc-H--HHHHHHH-HcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 347799999875 3 4444444 5799999884 566666 99999999988 4444333333
Q ss_pred Ee--------cCCCCC-ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHH
Q 009196 317 KV--------RTGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL 387 (540)
Q Consensus 317 Ki--------R~G~~e-~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~e 387 (540)
|. --||.+ ...++.+++..+.+.|+..|.++.-.+.++..| .|.+.++++++.+ ++|||++|||.|.+
T Consensus 144 k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G-~d~el~~~l~~~~--~ipVIASGGv~sle 220 (262)
T PLN02446 144 RKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLG-IDEELVALLGEHS--PIPVTYAGGVRSLD 220 (262)
T ss_pred EecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccC-CCHHHHHHHHhhC--CCCEEEECCCCCHH
Confidence 31 125655 344788899999999999999999999988877 7899999999997 79999999999999
Q ss_pred HHHHHHhcCCCcCeeeecHHHH
Q 009196 388 DWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 388 Da~~~l~~~~gaDgVMIGRgaL 409 (540)
|+.++.....|+.+|.|||+++
T Consensus 221 Di~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 221 DLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred HHHHHHHcCCCCEEEEEEeeHH
Confidence 9999665312789999999994
No 95
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.78 E-value=6e-07 Score=96.39 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=82.8
Q ss_pred CchHHHHHHHHhccccc-ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCc--------cCCCcCHHHHH
Q 009196 295 KPMRMKGIIEATSGTVD-KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--------YSKLADWDYIY 365 (540)
Q Consensus 295 ~p~~l~eIv~av~~~v~-iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~--------y~g~adw~~I~ 365 (540)
+++-+.++++.+++.++ +||.||+-.+. ...++++.++..|+|+|+|.|.-..+. +.+.+-...+.
T Consensus 197 ~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-----~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~ 271 (392)
T cd02808 197 SIEDLAQLIEDLREATGGKPIGVKLVAGH-----GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLA 271 (392)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEECCCC-----CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHH
Confidence 45678999999999997 99999998752 234778888888899999987632221 12222233444
Q ss_pred HHHHHc-----CCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 366 QCARKA-----SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 366 ~i~~~~-----~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
++.+.+ ..++|||+.|+|.+..|+.+++. .|||+|.+||++|.-
T Consensus 272 ~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala--LGAd~V~ig~~~l~a 320 (392)
T cd02808 272 RAHQALVKNGLRDRVSLIASGGLRTGADVAKALA--LGADAVGIGTAALIA 320 (392)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH--cCCCeeeechHHHHh
Confidence 554433 12699999999999999999998 699999999999953
No 96
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.76 E-value=5.9e-08 Score=102.28 Aligned_cols=197 Identities=20% Similarity=0.243 Sum_probs=124.7
Q ss_pred cCcccCCcEEEccCCCCCCHHHH-HHHHHhCCCEEEeccceechhccCChhhhhhhh-------cccCCC-eEEEEecCC
Q 009196 181 KLIDFREKLYLAPLTTVGNLPFR-RVCKVLGADVTCGEMAMCTNLLQGQASEWALLR-------RHSSED-LFGVQICGA 251 (540)
Q Consensus 181 ~~l~lknrliLAPM~~vtdlpfR-~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~-------~~~~e~-p~~vQL~G~ 251 (540)
+.+.|+-|++-|||.+|++..+- .+++..|.+++--+|...+. ......++ ...... .+++-+ |.
T Consensus 32 ~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q-----~~~v~~vK~~~~~a~~d~~~~l~V~aav-g~ 105 (352)
T PF00478_consen 32 RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQ-----AEEVKKVKRYYPNASKDEKGRLLVAAAV-GT 105 (352)
T ss_dssp TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHH-----HHHHHHHHTHHTTHHBHTTSCBCEEEEE-ES
T ss_pred CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHH-----HHHHhhhccccccccccccccceEEEEe-cC
Confidence 67899999999999999998777 44444467777655542211 11111111 112222 334443 34
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc-ccEEEEecCCCCCChhHHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD-KPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~-iPVtVKiR~G~~e~~~~~~ 330 (540)
.++.+.++..++ ++|+|.|=|... .| ..+.+.+.++.+++..+ +||.+--- .+.
T Consensus 106 ~~~~~er~~~L~--~agvD~ivID~a--------~g-------~s~~~~~~ik~ik~~~~~~~viaGNV--------~T~ 160 (352)
T PF00478_consen 106 RDDDFERAEALV--EAGVDVIVIDSA--------HG-------HSEHVIDMIKKIKKKFPDVPVIAGNV--------VTY 160 (352)
T ss_dssp STCHHHHHHHHH--HTT-SEEEEE-S--------ST-------TSHHHHHHHHHHHHHSTTSEEEEEEE---------SH
T ss_pred CHHHHHHHHHHH--HcCCCEEEcccc--------Cc-------cHHHHHHHHHHHHHhCCCceEEeccc--------CCH
Confidence 445676776665 479999877421 12 24667788888888774 78877321 234
Q ss_pred HHHHHHHHcCCcEEEEec------ccccCccCCCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 331 SLIADIGTWGASAVTVHG------RTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 331 ~la~~leeaGvdaItVHg------Rtr~q~y~g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
+-++.|.++|+|+|-|-- -||...=.|.+.+..|.+|++... -.+|||+-|||.+.-|+.++|. .|||+||
T Consensus 161 e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla--~GAd~VM 238 (352)
T PF00478_consen 161 EGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALA--AGADAVM 238 (352)
T ss_dssp HHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHH--TT-SEEE
T ss_pred HHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeee--eccccee
Confidence 667889999999998842 123322234456777877776541 1599999999999999999998 7999999
Q ss_pred ecHHHHh
Q 009196 404 IARGALI 410 (540)
Q Consensus 404 IGRgaL~ 410 (540)
+|+-+-.
T Consensus 239 lG~llAg 245 (352)
T PF00478_consen 239 LGSLLAG 245 (352)
T ss_dssp ESTTTTT
T ss_pred echhhcc
Confidence 9976544
No 97
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.75 E-value=4.7e-07 Score=94.98 Aligned_cols=191 Identities=15% Similarity=0.154 Sum_probs=108.3
Q ss_pred cccCCcEEEccCCCCCCHHHHHH-HHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHH---
Q 009196 183 IDFREKLYLAPLTTVGNLPFRRV-CKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLAR--- 258 (540)
Q Consensus 183 l~lknrliLAPM~~vtdlpfR~l-~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~--- 258 (540)
+.++-+|+.|||..+++..+--- ++..|.+.+=+-....+.+ ..+...++.+.. .||+|.|+...+.....
T Consensus 8 lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l----~~~i~~~~~~t~-~pfgvnl~~~~~~~~~~~~~ 82 (330)
T PF03060_consen 8 LGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQL----REEIRKIRALTD-KPFGVNLFLPPPDPADEEDA 82 (330)
T ss_dssp HT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHH----HHHHHHHHHH-S-S-EEEEEETTSTTHHHH-HH
T ss_pred hCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHH----HHHHHHHHhhcc-ccccccccccCcccchhhhh
Confidence 45678999999999999877643 4444566553221111111 122222333333 39999988653322111
Q ss_pred -------H-HHHHHHhC--------------CCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEE
Q 009196 259 -------T-VELIDQQC--------------TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITI 316 (540)
Q Consensus 259 -------A-A~~~~~~a--------------G~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtV 316 (540)
. ..... +. +++.|-..+|.|.. ++++.+++ .++.|.+
T Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~-------------------~~i~~l~~-~gi~v~~ 141 (330)
T PF03060_consen 83 WPKELGNAVLELCI-EEGVPFEEQLDVALEAKPDVVSFGFGLPPP-------------------EVIERLHA-AGIKVIP 141 (330)
T ss_dssp HHHHTHHHHHHHHH-HTT-SHHHHHHHHHHS--SEEEEESSSC-H-------------------HHHHHHHH-TT-EEEE
T ss_pred hhhhhHHHHHHHHH-HhCcccccccccccccceEEEEeecccchH-------------------HHHHHHHH-cCCcccc
Confidence 1 11111 22 34477777776642 23444433 3677777
Q ss_pred EecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCC-Cc--CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH
Q 009196 317 KVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSK-LA--DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK 393 (540)
Q Consensus 317 KiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g-~a--dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l 393 (540)
.+.. .+-|+.+.++|+|+|++-|.- .++..+ .. -+..+.++++.+ ++|||+.|||.|.+++..+|
T Consensus 142 ~v~s---------~~~A~~a~~~G~D~iv~qG~e-AGGH~g~~~~~~~~L~~~v~~~~--~iPViaAGGI~dg~~iaaal 209 (330)
T PF03060_consen 142 QVTS---------VREARKAAKAGADAIVAQGPE-AGGHRGFEVGSTFSLLPQVRDAV--DIPVIAAGGIADGRGIAAAL 209 (330)
T ss_dssp EESS---------HHHHHHHHHTT-SEEEEE-TT-SSEE---SSG-HHHHHHHHHHH---SS-EEEESS--SHHHHHHHH
T ss_pred ccCC---------HHHHHHhhhcCCCEEEEeccc-cCCCCCccccceeeHHHHHhhhc--CCcEEEecCcCCHHHHHHHH
Confidence 5542 455788999999999998652 233333 22 477889999998 79999999999999999999
Q ss_pred hcCCCcCeeeecHHHHhCCC
Q 009196 394 SDCPELASCMIARGALIKPW 413 (540)
Q Consensus 394 ~~~~gaDgVMIGRgaL~nPw 413 (540)
. .|||||++|..++.=+.
T Consensus 210 ~--lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 210 A--LGADGVQMGTRFLATEE 227 (330)
T ss_dssp H--CT-SEEEESHHHHTSTT
T ss_pred H--cCCCEeecCCeEEeccc
Confidence 7 79999999999987654
No 98
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.75 E-value=1.9e-07 Score=93.87 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=108.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHH-----HHHHHhcccccccEE--EEecCCCC
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMK-----GIIEATSGTVDKPIT--IKVRTGYF 323 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~-----eIv~av~~~v~iPVt--VKiR~G~~ 323 (540)
.+++.+.++++.+. ++ +|.||||+-||.+. .-|..+.+.+.++. ++++++++.+++|+. +|+.. .
T Consensus 15 p~~~~~~~~~~~l~-~~-ad~iElgip~sdp~----adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~-~- 86 (244)
T PRK13125 15 PNVESFKEFIIGLV-EL-VDILELGIPPKYPK----YDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED-Y- 86 (244)
T ss_pred CCHHHHHHHHHHHH-hh-CCEEEECCCCCCCC----CCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-h-
Confidence 47899999999887 56 99999999888764 23556666777777 899999988899974 55544 1
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecc-------c-------cc-------------------------Cc--c------C
Q 009196 324 EGKNRIDSLIADIGTWGASAVTVHGR-------T-------RQ-------------------------QR--Y------S 356 (540)
Q Consensus 324 e~~~~~~~la~~leeaGvdaItVHgR-------t-------r~-------------------------q~--y------~ 356 (540)
......+++.+.++|+++|++|.- . ++ .. | +
T Consensus 87 --~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~ 164 (244)
T PRK13125 87 --VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPAT 164 (244)
T ss_pred --hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCC
Confidence 234567888889999999999831 0 00 00 0 0
Q ss_pred CC---cC-HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 357 KL---AD-WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 357 g~---ad-w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
|. .+ .+.++++++..+ +.||+.-|||.+++++.+++. .|||+|.+|++++.
T Consensus 165 g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~--~gaD~vvvGSai~~ 219 (244)
T PRK13125 165 GVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALS--AGADGVVVGTAFIE 219 (244)
T ss_pred CCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHH--cCCCEEEECHHHHH
Confidence 11 11 346777777764 579999999999999999776 79999999998764
No 99
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=98.75 E-value=1.4e-06 Score=89.25 Aligned_cols=238 Identities=14% Similarity=0.104 Sum_probs=157.6
Q ss_pred CcccCCcEEEccCC-----CC-CCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCc-HH
Q 009196 182 LIDFREKLYLAPLT-----TV-GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAY-PD 254 (540)
Q Consensus 182 ~l~lknrliLAPM~-----~v-tdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~-p~ 254 (540)
+-.+.-++++||-+ .. |...--+-|...|.-+++|-+.++.. .+ +....+ +..-..||+-.. -+
T Consensus 64 G~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~------Ed--I~~aap-~~~rwfQLYvykdr~ 134 (363)
T KOG0538|consen 64 GQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSV------ED--IASAAP-PGIRWFQLYVYKDRD 134 (363)
T ss_pred cccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCH------HH--HHhhCC-CCcEEEEEEecCchH
Confidence 44556789999932 22 34555566666676777766655432 11 122222 335678999654 44
Q ss_pred HHHHHHHHHHHhCCCCEEEecCC----------------CCCc------------cccc-CCcc--ccccC--CchHHHH
Q 009196 255 TLARTVELIDQQCTVDFIDINMG----------------CPID------------IVVN-KGAG--SCLLT--KPMRMKG 301 (540)
Q Consensus 255 ~~a~AA~~~~~~aG~D~IDIN~G----------------CP~~------------~v~~-~G~G--saLl~--~p~~l~e 301 (540)
--.+..++++ .+||..|=+-.- -|.. ++.. ...| .+... +|.+-=+
T Consensus 135 It~~Lv~raE-k~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~ 213 (363)
T KOG0538|consen 135 ITEQLVKRAE-KAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWK 213 (363)
T ss_pred HHHHHHHHHH-HcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChh
Confidence 4456667776 789998755432 2321 0100 0011 11111 3333344
Q ss_pred HHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC
Q 009196 302 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 381 (540)
Q Consensus 302 Iv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG 381 (540)
=++.++..++.|+.||--+..+ =|..+.++|++.|.|++....|....+|-.+.+.++.+++.++|||+..|
T Consensus 214 Di~wLr~~T~LPIvvKGilt~e--------DA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDG 285 (363)
T KOG0538|consen 214 DIKWLRSITKLPIVVKGVLTGE--------DARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDG 285 (363)
T ss_pred hhHHHHhcCcCCeEEEeecccH--------HHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEec
Confidence 5777888889999999665322 25677899999999988777777778899999999999998899999999
Q ss_pred CCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 009196 382 DIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWG 447 (540)
Q Consensus 382 dI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g 447 (540)
||++..|+.++|. .||.+|.|||+.+.--. -++.. -..+-+++|+.-++..+..-|
T Consensus 286 GVR~G~DVlKALA--LGAk~VfiGRP~v~gLA-----~~Ge~---GV~~vl~iL~~efe~tmaLsG 341 (363)
T KOG0538|consen 286 GVRRGTDVLKALA--LGAKGVFIGRPIVWGLA-----AKGEA---GVKKVLDILRDEFELTMALSG 341 (363)
T ss_pred CcccchHHHHHHh--cccceEEecCchheeec-----cccch---hHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999997 79999999998764322 22222 246778899887777666544
No 100
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.74 E-value=1.7e-07 Score=92.48 Aligned_cols=122 Identities=10% Similarity=0.128 Sum_probs=86.6
Q ss_pred HHHHHhCCCCEEEecCCCCCcccccCCccccccCCc--hHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHH
Q 009196 261 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP--MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT 338 (540)
Q Consensus 261 ~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p--~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~lee 338 (540)
+.+. ++|+|+|-+.. |. ...| +.+.++++.+++..++|+.+-+.. .+-+..+.+
T Consensus 82 ~~a~-~aGad~I~~d~--~~------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t---------~ee~~~a~~ 137 (221)
T PRK01130 82 DALA-AAGADIIALDA--TL------------RPRPDGETLAELVKRIKEYPGQLLMADCST---------LEEGLAAQK 137 (221)
T ss_pred HHHH-HcCCCEEEEeC--CC------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCCC---------HHHHHHHHH
Confidence 4444 67999888742 21 1122 456677777766446777764331 223567899
Q ss_pred cCCcEEEEe--cccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 339 WGASAVTVH--GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 339 aGvdaItVH--gRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
+|+++|.++ |.+.........++++++++++.+ ++||++.|||.+++++.++++ .|||+|+||++++.
T Consensus 138 ~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~--~GadgV~iGsai~~ 207 (221)
T PRK01130 138 LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALE--LGAHAVVVGGAITR 207 (221)
T ss_pred cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHH--CCCCEEEEchHhcC
Confidence 999999775 333322223445789999999988 799999999999999999887 68999999988654
No 101
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.73 E-value=9.5e-07 Score=88.50 Aligned_cols=203 Identities=16% Similarity=0.137 Sum_probs=128.2
Q ss_pred cccCcccCCcEEEccCCCCCC-HHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecC-CcHHHH
Q 009196 179 EKKLIDFREKLYLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG-AYPDTL 256 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~vtd-lpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G-~~p~~~ 256 (540)
.+++..|+.|+++-- ..|.+ .-.+...+.-|++++..-+=-...--.+...-|.++. ..+..+-..-.| .+.++.
T Consensus 2 ~i~~~~~~SRl~~Gt-gky~s~~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~--~~~~~~lpNTaG~~ta~eA 78 (248)
T cd04728 2 TIGGKTFSSRLLLGT-GKYPSPAIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLD--KSGYTLLPNTAGCRTAEEA 78 (248)
T ss_pred eECCEEeecceEEec-CCCCCHHHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhcc--ccCCEECCCCCCCCCHHHH
Confidence 467889999998842 22333 3444555567998763211111100112233344432 122222233333 468899
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcc-cc-cccEEEEecCCCCCChhHHHHHHH
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG-TV-DKPITIKVRTGYFEGKNRIDSLIA 334 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~-~v-~iPVtVKiR~G~~e~~~~~~~la~ 334 (540)
++.|+++.+-.|-|+|-|- |..+ --.|+.++....+-.+.+.+ -. -+|+.. ++ ..+++
T Consensus 79 v~~a~lare~~~~~~iKlE-------Vi~d--~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~-------dd----~~~ar 138 (248)
T cd04728 79 VRTARLAREALGTDWIKLE-------VIGD--DKTLLPDPIETLKAAEILVKEGFTVLPYCT-------DD----PVLAK 138 (248)
T ss_pred HHHHHHHHHHhCCCeEEEE-------EecC--ccccccCHHHHHHHHHHHHHCCCEEEEEeC-------CC----HHHHH
Confidence 9999999855577887664 2211 11355565554444443321 11 233432 22 46899
Q ss_pred HHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 335 DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 335 ~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+|++.|+++|..+|..-..+ .|..++++|+.+++.. ++|||..|||.+++|+.++++ .|||+|++|.+..
T Consensus 139 ~l~~~G~~~vmPlg~pIGsg-~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~Ame--lGAdgVlV~SAIt 208 (248)
T cd04728 139 RLEDAGCAAVMPLGSPIGSG-QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAME--LGADAVLLNTAIA 208 (248)
T ss_pred HHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHH--cCCCEEEEChHhc
Confidence 99999999998777654444 4667899999999986 799999999999999999997 7999999998886
No 102
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.71 E-value=1.3e-07 Score=94.22 Aligned_cols=180 Identities=17% Similarity=0.258 Sum_probs=120.7
Q ss_pred HHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccC
Q 009196 207 KVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNK 286 (540)
Q Consensus 207 ~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~ 286 (540)
...|++.++-= --+....+....+.++..-....++-+|+.|.- ..+..+.+++ .+|++-|=|
T Consensus 39 ~~~g~~~l~iv--DLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGI-rs~ed~~~ll--~~Ga~~Vvi------------ 101 (229)
T PF00977_consen 39 NEQGADELHIV--DLDAAKEGRGSNLELIKEIAKETGIPIQVGGGI-RSIEDAERLL--DAGADRVVI------------ 101 (229)
T ss_dssp HHTT-SEEEEE--EHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE--SHHHHHHHH--HTT-SEEEE------------
T ss_pred HHcCCCEEEEE--EccCcccCchhHHHHHHHHHhcCCccEEEeCcc-CcHHHHHHHH--HhCCCEEEe------------
Confidence 45688865411 111222343434444433223334678888863 3444455555 368887766
Q ss_pred CccccccCCchHHHHHHHHhcccccccEEEEecC-------CCCCC-hhHHHHHHHHHHHcCCcEEEEecccccCccCCC
Q 009196 287 GAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT-------GYFEG-KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL 358 (540)
Q Consensus 287 G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~-------G~~e~-~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~ 358 (540)
|+..+++|+++.++++..-.. .+-+++-+|- ||.+. ..+..++++.+.+.|+..|.++.-.+.+...|
T Consensus 102 --gt~~~~~~~~l~~~~~~~g~~-~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G- 177 (229)
T PF00977_consen 102 --GTEALEDPELLEELAERYGSQ-RIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQG- 177 (229)
T ss_dssp --SHHHHHCCHHHHHHHHHHGGG-GEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS-
T ss_pred --ChHHhhchhHHHHHHHHcCcc-cEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCC-
Confidence 677889999999999987541 1223333333 45442 34789999999999999999999888888887
Q ss_pred cCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 359 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 359 adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
.|++.++++++.+ ++|||++|||.+.+|+.++.. .|+++|++|++++..
T Consensus 178 ~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~--~G~~gvivg~al~~g 226 (229)
T PF00977_consen 178 PDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKK--AGIDGVIVGSALHEG 226 (229)
T ss_dssp --HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHH--TTECEEEESHHHHTT
T ss_pred CCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHH--CCCcEEEEehHhhCC
Confidence 7899999999998 799999999999999999664 899999999998753
No 103
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.70 E-value=7.7e-07 Score=89.21 Aligned_cols=143 Identities=12% Similarity=0.226 Sum_probs=109.4
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec----
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR---- 319 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR---- 319 (540)
+-+|+.|. ...+..+.+++ .+|++-|=| |++.+++|+++.++.+..-+. +-|++-.|
T Consensus 77 ~pi~vGGG-Irs~e~v~~~l--~~Ga~kvvi--------------gt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v 137 (234)
T PRK13587 77 KDIEVGGG-IRTKSQIMDYF--AAGINYCIV--------------GTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDI 137 (234)
T ss_pred CeEEEcCC-cCCHHHHHHHH--HCCCCEEEE--------------CchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEE
Confidence 44788775 22333333344 468888755 577789999999998887433 22333333
Q ss_pred --CCCCCC-hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 009196 320 --TGYFEG-KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 396 (540)
Q Consensus 320 --~G~~e~-~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 396 (540)
-||.+. ..+..++++.+.++|+..|.+..-.+.+...| .|++.+.++.+.+ ++|||+.|||.|.+|+.+++.
T Consensus 138 ~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~-- 212 (234)
T PRK13587 138 KVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSG-PNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLAS-- 212 (234)
T ss_pred EecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCc-cCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH--
Confidence 256442 34678999999999999999988888877777 7899999999887 799999999999999999875
Q ss_pred CCcCeeeecHHHHh
Q 009196 397 PELASCMIARGALI 410 (540)
Q Consensus 397 ~gaDgVMIGRgaL~ 410 (540)
.|+++|.+|++++.
T Consensus 213 ~G~~~vivG~a~~~ 226 (234)
T PRK13587 213 LNVHAAIIGKAAHQ 226 (234)
T ss_pred cCCCEEEEhHHHHh
Confidence 79999999999885
No 104
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.63 E-value=5.2e-06 Score=81.65 Aligned_cols=175 Identities=13% Similarity=0.087 Sum_probs=110.5
Q ss_pred HHHHHhCCCEE--EeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCc
Q 009196 204 RVCKVLGADVT--CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID 281 (540)
Q Consensus 204 ~l~~~~Gadl~--~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~ 281 (540)
+.....||+.+ .|+.... .+....+..++.. .+.|+.++=+..++.+ ++.+. ++|+|+|=|. ++
T Consensus 38 ~~~~~~GA~~l~v~~~~~~~----~g~~~~~~~i~~~-v~iPi~~~~~i~~~~~----v~~~~-~~Gad~v~l~--~~-- 103 (217)
T cd00331 38 KAYEKAGAAAISVLTEPKYF----QGSLEDLRAVREA-VSLPVLRKDFIIDPYQ----IYEAR-AAGADAVLLI--VA-- 103 (217)
T ss_pred HHHHHcCCCEEEEEeCcccc----CCCHHHHHHHHHh-cCCCEEECCeecCHHH----HHHHH-HcCCCEEEEe--ec--
Confidence 44455788865 2222211 2233333444332 2456655433345432 33333 5799999873 11
Q ss_pred ccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCH
Q 009196 282 IVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 361 (540)
Q Consensus 282 ~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw 361 (540)
.+. ++.+.++++.... .++.+.+-+. +| .+ ++.+.++|++.+.+++|+.... ..+.
T Consensus 104 ----------~~~-~~~~~~~~~~~~~-~g~~~~v~v~-~~----~e----~~~~~~~g~~~i~~t~~~~~~~---~~~~ 159 (217)
T cd00331 104 ----------ALD-DEQLKELYELARE-LGMEVLVEVH-DE----EE----LERALALGAKIIGINNRDLKTF---EVDL 159 (217)
T ss_pred ----------cCC-HHHHHHHHHHHHH-cCCeEEEEEC-CH----HH----HHHHHHcCCCEEEEeCCCcccc---CcCH
Confidence 122 3667777776643 3555444443 22 11 5667789999999997764322 4567
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHH
Q 009196 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 362 ~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~ei 418 (540)
+.+.++++.++.++||++.|||.+++++.+++. .|||+|+||++++..+..-+.+
T Consensus 160 ~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~--~Ga~gvivGsai~~~~~p~~~~ 214 (217)
T cd00331 160 NTTERLAPLIPKDVILVSESGISTPEDVKRLAE--AGADAVLIGESLMRAPDPGAAL 214 (217)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHH--cCCCEEEECHHHcCCCCHHHHH
Confidence 889999888633699999999999999999876 6999999999999877655544
No 105
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.60 E-value=1.8e-06 Score=90.16 Aligned_cols=197 Identities=17% Similarity=0.162 Sum_probs=130.6
Q ss_pred CcccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhh-hhhcccCC--CeEEEEecCCcHHHHHH
Q 009196 182 LIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA-LLRRHSSE--DLFGVQICGAYPDTLAR 258 (540)
Q Consensus 182 ~l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~-ll~~~~~e--~p~~vQL~G~~p~~~a~ 258 (540)
...++=|++-|+|.++++..+-....++|.=.++=-+. ...+|. +++....+ ..+.|. .|-.++++.+
T Consensus 42 ~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~--------~~e~~~~fv~~~~~~~~~~~~va-vG~~~~d~er 112 (346)
T PRK05096 42 QSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHY--------SVEEWAAFVNNSSADVLKHVMVS-TGTSDADFEK 112 (346)
T ss_pred ccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCC--------CHHHHHHHHHhccccccceEEEE-ecCCHHHHHH
Confidence 44556899999999999988776666665322221111 122333 23222222 233342 3667899999
Q ss_pred HHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHH
Q 009196 259 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIG 337 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~le 337 (540)
+.++++..+|+|.|=|.... | +.+.+.++|+.+++.. +.+|.+ |- -.+.+.++.|.
T Consensus 113 ~~~L~~~~~g~D~iviD~Ah--------G-------hs~~~i~~ik~ik~~~P~~~vIa----GN----V~T~e~a~~Li 169 (346)
T PRK05096 113 TKQILALSPALNFICIDVAN--------G-------YSEHFVQFVAKAREAWPDKTICA----GN----VVTGEMVEELI 169 (346)
T ss_pred HHHHHhcCCCCCEEEEECCC--------C-------cHHHHHHHHHHHHHhCCCCcEEE----ec----ccCHHHHHHHH
Confidence 99888634799988775322 2 3567888999999876 566665 21 12346788899
Q ss_pred HcCCcEEEEec------ccccCccCCCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 338 TWGASAVTVHG------RTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 338 eaGvdaItVHg------Rtr~q~y~g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
++|||+|-|-- -|+...-.|.+.+..|.+|++... ..+|||+.|||.+.-|+.++|. .|||+||+|+-+-.
T Consensus 170 ~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAla--aGAd~VMlGsllAG 247 (346)
T PRK05096 170 LSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFG--GGADFVMLGGMLAG 247 (346)
T ss_pred HcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHH--cCCCEEEeChhhcC
Confidence 99999997631 233322234456777777766431 1589999999999999999997 79999999977655
Q ss_pred CC
Q 009196 411 KP 412 (540)
Q Consensus 411 nP 412 (540)
--
T Consensus 248 t~ 249 (346)
T PRK05096 248 HE 249 (346)
T ss_pred cc
Confidence 44
No 106
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.59 E-value=2.8e-06 Score=85.29 Aligned_cols=204 Identities=16% Similarity=0.143 Sum_probs=127.1
Q ss_pred ccccCcccCCcEEEccCCCCCCH-HHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecC-CcHHH
Q 009196 178 REKKLIDFREKLYLAPLTTVGNL-PFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG-AYPDT 255 (540)
Q Consensus 178 ~e~~~l~lknrliLAPM~~vtdl-pfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G-~~p~~ 255 (540)
..+++..|+.|++|-- ..|.+. -.+.....-|++++..-+=-. .+.++...-|.++.. ....+-..-+| .+.++
T Consensus 2 l~i~~~~~~SRl~~Gt-gky~s~~~~~~ai~asg~~ivTvalrR~-~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~e 77 (250)
T PRK00208 2 LTIAGKTFSSRLLLGT-GKYPSPQVMQEAIEASGAEIVTVALRRV-NLGQGGDNLLDLLPP--LGVTLLPNTAGCRTAEE 77 (250)
T ss_pred cEECCEEeeccceEec-CCCCCHHHHHHHHHHhCCCeEEEEEEee-cCCCCcchHHhhccc--cCCEECCCCCCCCCHHH
Confidence 4677889999998842 234343 445555567998763211111 111122333444421 12222223333 46899
Q ss_pred HHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhc-ccc-cccEEEEecCCCCCChhHHHHHH
Q 009196 256 LARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS-GTV-DKPITIKVRTGYFEGKNRIDSLI 333 (540)
Q Consensus 256 ~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~-~~v-~iPVtVKiR~G~~e~~~~~~~la 333 (540)
.++.|+++.+-.|-++|-|- |..+- -.++.++....+-.+.+. +-. -+|+.. ++ ..++
T Consensus 78 Av~~a~lare~~~~~~iKlE-------Vi~d~--~~llpd~~~tv~aa~~L~~~Gf~vlpyc~-------~d----~~~a 137 (250)
T PRK00208 78 AVRTARLAREALGTNWIKLE-------VIGDD--KTLLPDPIETLKAAEILVKEGFVVLPYCT-------DD----PVLA 137 (250)
T ss_pred HHHHHHHHHHHhCCCeEEEE-------EecCC--CCCCcCHHHHHHHHHHHHHCCCEEEEEeC-------CC----HHHH
Confidence 99999999855677887664 22111 124445444433333331 111 233332 22 4689
Q ss_pred HHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 334 ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 334 ~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
++|++.|+++|..+|..-..+ .+..++++++.+++.. ++|||..|||.+++|+.++++ .|||+|++|.|...
T Consensus 138 k~l~~~G~~~vmPlg~pIGsg-~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~Ame--lGAdgVlV~SAItk 209 (250)
T PRK00208 138 KRLEEAGCAAVMPLGAPIGSG-LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAME--LGADAVLLNTAIAV 209 (250)
T ss_pred HHHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHH--cCCCEEEEChHhhC
Confidence 999999999997766654433 4667899999999986 799999999999999999998 79999999988863
No 107
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.55 E-value=8.9e-07 Score=90.26 Aligned_cols=181 Identities=15% Similarity=0.071 Sum_probs=115.5
Q ss_pred CCCCHHHHHHHHHhCC-CEEEeccceechhccCCh-----h-hhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCC
Q 009196 196 TVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQA-----S-EWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT 268 (540)
Q Consensus 196 ~vtdlpfR~l~~~~Ga-dl~~TEmi~a~~l~~g~~-----~-e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG 268 (540)
.|++.---+++.+.|| .+..-|-+-++.-.+|+- . ...-++.. -+-|++ =|+ ....|.++-. +. ++|
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~-V~iPVI-Gi~--K~~~~~Ea~~-L~-eaG 87 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDA-VSIPVM-AKV--RIGHFVEAQI-LE-ALG 87 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHh-CCCCeE-Eee--ehhHHHHHHH-HH-HcC
Confidence 6778877888888886 455544443433222221 1 11112221 133443 111 1222555544 44 589
Q ss_pred CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEE--EE
Q 009196 269 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAV--TV 346 (540)
Q Consensus 269 ~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaI--tV 346 (540)
+|.|| |-- -.+| +.+++..++...+.||.+-++. .+=+.+..+.|+|.| |+
T Consensus 88 vDiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~st---------leEal~a~~~Gad~I~TTl 140 (283)
T cd04727 88 VDMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGARN---------LGEALRRISEGAAMIRTKG 140 (283)
T ss_pred CCEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCCC---------HHHHHHHHHCCCCEEEecC
Confidence 99997 211 1233 5677777877778899987764 223556678899999 44
Q ss_pred eccccc------------------CccC----------CCcCHHHHHHHHHHcCCCceEE--EeCCCCCHHHHHHHHhcC
Q 009196 347 HGRTRQ------------------QRYS----------KLADWDYIYQCARKASDDLQVL--GNGDIYSYLDWNKHKSDC 396 (540)
Q Consensus 347 HgRtr~------------------q~y~----------g~adw~~I~~i~~~~~~~IPVI--gNGdI~s~eDa~~~l~~~ 396 (540)
+|-|.. .+|+ ..++|+.++++++.+ ++||| +.|||.+++++.++++
T Consensus 141 ~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e-- 216 (283)
T cd04727 141 EAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQ-- 216 (283)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHH--
Confidence 444443 2221 236899999999988 69997 9999999999999887
Q ss_pred CCcCeeeecHHHHhCCC
Q 009196 397 PELASCMIARGALIKPW 413 (540)
Q Consensus 397 ~gaDgVMIGRgaL~nPw 413 (540)
.|||+|+||++++.-+.
T Consensus 217 ~GAdgVaVGSAI~~a~d 233 (283)
T cd04727 217 LGADGVFVGSGIFKSEN 233 (283)
T ss_pred cCCCEEEEcHHhhcCCC
Confidence 79999999999986443
No 108
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.52 E-value=4.9e-06 Score=83.26 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=121.8
Q ss_pred HHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccC
Q 009196 207 KVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNK 286 (540)
Q Consensus 207 ~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~ 286 (540)
...|++.++-=-+.+ . .+......+++.-.....+-+|+.|. ...+..+.+.+ .+|++-|=|
T Consensus 45 ~~~g~~~l~i~DLd~--~-~~~~~n~~~i~~i~~~~~~~v~vgGG-ir~~edv~~~l--~~Ga~~vii------------ 106 (233)
T cd04723 45 KELGFRGLYIADLDA--I-MGRGDNDEAIRELAAAWPLGLWVDGG-IRSLENAQEWL--KRGASRVIV------------ 106 (233)
T ss_pred HHCCCCEEEEEeCcc--c-cCCCccHHHHHHHHHhCCCCEEEecC-cCCHHHHHHHH--HcCCCeEEE------------
Confidence 345887654222211 1 23333333333322333345888874 23344444444 358777655
Q ss_pred CccccccCCchHHHHHHHHhcccccccEEEEecCC---CCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHH
Q 009196 287 GAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG---YFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY 363 (540)
Q Consensus 287 G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G---~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~ 363 (540)
|+...++ +++.++++...+. .+-+++-++-| +.....+..++++.+++. ++.+.+..-.+.....+ .+++.
T Consensus 107 --gt~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g-~~~~~ 180 (233)
T cd04723 107 --GTETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQG-PDLEL 180 (233)
T ss_pred --cceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCCC-cCHHH
Confidence 4566678 9999999988541 23344444443 122334678899999999 99999988777666554 78999
Q ss_pred HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHH
Q 009196 364 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417 (540)
Q Consensus 364 I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~e 417 (540)
+.++.+.+ ++||++.|||.|.+|+.+++. .|+++|.||++++..-.-+.+
T Consensus 181 ~~~i~~~~--~ipvi~~GGi~s~edi~~l~~--~G~~~vivGsal~~g~~~~~~ 230 (233)
T cd04723 181 LERLAARA--DIPVIAAGGVRSVEDLELLKK--LGASGALVASALHDGGLTLED 230 (233)
T ss_pred HHHHHHhc--CCCEEEeCCCCCHHHHHHHHH--cCCCEEEEehHHHcCCCCHHH
Confidence 99999987 799999999999999999876 699999999999876433333
No 109
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.52 E-value=2.3e-06 Score=86.22 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=110.7
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC---
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT--- 320 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~--- 320 (540)
+-+|+.|.- ..+..+-+++ .+|+|-|=| |+..+++|+++.++ ...-. .+-+++-.|-
T Consensus 74 ~~v~vGGGI-rs~e~~~~~l--~~Ga~rvvi--------------gT~a~~~p~~l~~~-~~~~~--~ivvslD~k~g~v 133 (241)
T PRK14114 74 EHIQIGGGI-RSLDYAEKLR--KLGYRRQIV--------------SSKVLEDPSFLKFL-KEIDV--EPVFSLDTRGGKV 133 (241)
T ss_pred CcEEEecCC-CCHHHHHHHH--HCCCCEEEE--------------CchhhCCHHHHHHH-HHhCC--CEEEEEEccCCEE
Confidence 357888752 2233333333 468888765 56778899999998 44322 2334444432
Q ss_pred ---CCCC-ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc-
Q 009196 321 ---GYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD- 395 (540)
Q Consensus 321 ---G~~e-~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~- 395 (540)
||.+ ......++++.+++.|+..|.+..-.+.+..+| .|++.++++++.+ ++|||++|||.|.+|+.++..-
T Consensus 134 ~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G-~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~ 210 (241)
T PRK14114 134 AFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-HDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVH 210 (241)
T ss_pred eeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCC-cCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcc
Confidence 5644 234688999999999999999998888888877 7999999999987 7999999999999999986652
Q ss_pred --CCC-cCeeeecHHHHhCCCchHHH
Q 009196 396 --CPE-LASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 396 --~~g-aDgVMIGRgaL~nPwif~ei 418 (540)
..| ++||.||++++..--=+.++
T Consensus 211 ~~~~g~v~gvivg~Al~~g~i~~~e~ 236 (241)
T PRK14114 211 RETNGLLKGVIVGRAFLEGILTVEVM 236 (241)
T ss_pred cccCCcEEEEEEehHHHCCCCCHHHH
Confidence 015 99999999998765444444
No 110
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.52 E-value=3.2e-06 Score=85.62 Aligned_cols=146 Identities=12% Similarity=0.123 Sum_probs=108.8
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCC----chHHHHHHHHh-cccccccEEEE
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTK----PMRMKGIIEAT-SGTVDKPITIK 317 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~----p~~l~eIv~av-~~~v~iPVtVK 317 (540)
.+.+|+.|.-- . ..+.+.+ .+|++.|=| |+++..+ |+++.++.+.. .+.+-+-+-+|
T Consensus 76 ~~~v~vGGGIr-~-e~v~~~l--~aGa~rVvI--------------GS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k 137 (253)
T TIGR02129 76 PGGLQVGGGIN-D-TNAQEWL--DEGASHVIV--------------TSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCR 137 (253)
T ss_pred CCCEEEeCCcC-H-HHHHHHH--HcCCCEEEE--------------CcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEE
Confidence 36689888754 2 4444444 479999988 4556665 78899988888 45442333333
Q ss_pred e---------cCCCCCC-hhHHH-HHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCH
Q 009196 318 V---------RTGYFEG-KNRID-SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSY 386 (540)
Q Consensus 318 i---------R~G~~e~-~~~~~-~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~ 386 (540)
. --||.+. ..++. ++++.+++. +..|.++.-.++++..| .|++.++++++.+ ++|||++|||.|.
T Consensus 138 ~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G-~dlel~~~l~~~~--~ipVIASGGv~s~ 213 (253)
T TIGR02129 138 KTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCKG-IDEELVSKLGEWS--PIPITYAGGAKSI 213 (253)
T ss_pred EcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCcccc-CCHHHHHHHHhhC--CCCEEEECCCCCH
Confidence 1 1257653 34666 999999999 99999999999988887 7999999999987 7999999999999
Q ss_pred HHHHHHHhcCCCcCeeeecHHHHh
Q 009196 387 LDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 387 eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
+|+.++..-..+..++.+|++++.
T Consensus 214 eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 214 DDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHHHhcCCCCcEEeeehHHH
Confidence 999986331126778999999875
No 111
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.51 E-value=7.4e-07 Score=94.49 Aligned_cols=146 Identities=19% Similarity=0.163 Sum_probs=107.7
Q ss_pred CCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCC
Q 009196 294 TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD 373 (540)
Q Consensus 294 ~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~ 373 (540)
.+|-...+.+..|++.+..|+.+|--... .+ +..+...|+++|.++.....|...+++-.+.+.+|++.+++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~kGV~~~----~D----~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~ 272 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLKGILAP----ED----AAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGD 272 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHhCCCCH----HH----HHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCC
Confidence 46677777777787777777777633211 11 45667889999999876666666777888999999999976
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCcchhH
Q 009196 374 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGV 453 (540)
Q Consensus 374 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~d~~gv 453 (540)
+++|++.|||++..|+.+++. -|||+|+|||+.|.--.. .+.. --.+-++++++-++..+..-|. +-|
T Consensus 273 ~~~vi~dGGiR~G~Dv~KAlA--LGA~~v~igrp~L~~l~~-----~g~~---GV~~~le~~~~El~~~M~L~G~--~~i 340 (360)
T COG1304 273 RIEVIADGGIRSGLDVAKALA--LGADAVGIGRPFLYGLAA-----GGEA---GVERVLEIIRKELKIAMALTGA--KNI 340 (360)
T ss_pred CeEEEecCCCCCHHHHHHHHH--hCCchhhhhHHHHHHHHh-----ccHH---HHHHHHHHHHHHHHHHHHhcCC--CcH
Confidence 699999999999999999998 799999999998743211 1111 1345678888888887777775 456
Q ss_pred HHHHHH
Q 009196 454 ETTRHF 459 (540)
Q Consensus 454 ~~~R~~ 459 (540)
...++.
T Consensus 341 ~el~~~ 346 (360)
T COG1304 341 EELKRV 346 (360)
T ss_pred HHhccC
Confidence 655553
No 112
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.48 E-value=3.5e-06 Score=86.03 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=92.5
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
|++++ ++|+-.|--=---|.+. +...|-+=+++|+.+.+|.+ ++++||.-|+|.|. ..=|+.|+++
T Consensus 23 a~iae-~aga~avm~le~~p~d~--r~~ggv~R~~~p~~I~~I~~----~V~iPVig~~kigh-------~~Ea~~L~~~ 88 (287)
T TIGR00343 23 AKIAE-EAGAVAVMALERVPADI--RASGGVARMSDPKMIKEIMD----AVSIPVMAKVRIGH-------FVEAQILEAL 88 (287)
T ss_pred HHHHH-HcCceEEEeeccCchhh--HhcCCeeecCCHHHHHHHHH----hCCCCEEEEeeccH-------HHHHHHHHHc
Confidence 45555 67865543222346553 33446777888887666554 45899999999874 2224556666
Q ss_pred CCcEEEEecc-----------------------------------------cccCccCC---------------------
Q 009196 340 GASAVTVHGR-----------------------------------------TRQQRYSK--------------------- 357 (540)
Q Consensus 340 GvdaItVHgR-----------------------------------------tr~q~y~g--------------------- 357 (540)
|+|.|--+-| |.-..|++
T Consensus 89 GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~ 168 (287)
T TIGR00343 89 GVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQN 168 (287)
T ss_pred CCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 6666642211 11112333
Q ss_pred --------------CcCHHHHHHHHHHcCCCceEE--EeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 358 --------------LADWDYIYQCARKASDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 358 --------------~adw~~I~~i~~~~~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
.++++.++++++.. ++||| +.|||.|++++..+++ .|||+|+||+++...+
T Consensus 169 ~~~~~~~~~~a~~~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~me--lGAdGVaVGSaI~ks~ 235 (287)
T TIGR00343 169 MLEEEDLAAVAKELRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQ--LGADGVFVGSGIFKSS 235 (287)
T ss_pred ccchhHHhhhhcccCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHH--cCCCEEEEhHHhhcCC
Confidence 25788999999877 79998 9999999999999887 7999999999988533
No 113
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.45 E-value=3.9e-06 Score=84.07 Aligned_cols=142 Identities=12% Similarity=0.096 Sum_probs=106.6
Q ss_pred EEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHh-cccccccEEEEec----
Q 009196 245 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT-SGTVDKPITIKVR---- 319 (540)
Q Consensus 245 ~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av-~~~v~iPVtVKiR---- 319 (540)
-+|+.|.- ..+..+.+++ ..|+|-|=| |+...++|+++.++.+.. .+.+ -+++-.|
T Consensus 75 ~v~vGGGI-rs~e~~~~~l--~~Ga~kvvi--------------gt~a~~~p~~~~~~~~~~g~~~i--vvslD~~~~~~ 135 (232)
T PRK13586 75 WIQVGGGI-RDIEKAKRLL--SLDVNALVF--------------STIVFTNFNLFHDIVREIGSNRV--LVSIDYDNTKR 135 (232)
T ss_pred CEEEeCCc-CCHHHHHHHH--HCCCCEEEE--------------CchhhCCHHHHHHHHHHhCCCCE--EEEEEcCCCCE
Confidence 47887751 2223333333 358888755 677789999999999887 3332 2333332
Q ss_pred ---CCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 009196 320 ---TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 396 (540)
Q Consensus 320 ---~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 396 (540)
-||.+......++++++++.|+..|.++.-.+.+...| .|++.++.+++. + .|+|++|||.|.+|+.++..
T Consensus 136 v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G-~d~el~~~~~~~-~--~~viasGGv~s~~Dl~~l~~-- 209 (232)
T PRK13586 136 VLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKG-IDYNVKDYARLI-R--GLKEYAGGVSSDADLEYLKN-- 209 (232)
T ss_pred EEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcC-cCHHHHHHHHhC-C--CCEEEECCCCCHHHHHHHHH--
Confidence 25766555788999999999999999999888888877 789998888765 3 46999999999999999664
Q ss_pred CCcCeeeecHHHHhC
Q 009196 397 PELASCMIARGALIK 411 (540)
Q Consensus 397 ~gaDgVMIGRgaL~n 411 (540)
.|+++|.||++++..
T Consensus 210 ~G~~gvivg~Aly~g 224 (232)
T PRK13586 210 VGFDYIIVGMAFYLG 224 (232)
T ss_pred CCCCEEEEehhhhcC
Confidence 799999999998743
No 114
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.42 E-value=1.2e-06 Score=86.95 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++++.+++.|++.|+++...+... ....+++.++++++.+ ++||+++|||.+.+++.+++. .|++.|++|+
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~-~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~--~G~~~vilg~ 104 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLS--LGADKVSINT 104 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCccc-CCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHH--cCCCEEEECh
Confidence 3688999999999999999999887433 3458999999999988 699999999999999999765 6999999999
Q ss_pred HHHhCCCchHHHHhc
Q 009196 407 GALIKPWIFTEIKEQ 421 (540)
Q Consensus 407 gaL~nPwif~eik~~ 421 (540)
+++.+|.++.++.+.
T Consensus 105 ~~l~~~~~~~~~~~~ 119 (232)
T TIGR03572 105 AALENPDLIEEAARR 119 (232)
T ss_pred hHhcCHHHHHHHHHH
Confidence 999999999998763
No 115
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.41 E-value=2.4e-05 Score=77.80 Aligned_cols=133 Identities=11% Similarity=0.120 Sum_probs=92.3
Q ss_pred EEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEE----ec
Q 009196 246 VQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIK----VR 319 (540)
Q Consensus 246 vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVK----iR 319 (540)
+|+.|. +.+++.++...+. +++-|=| |+..+++|+++.++.. .+.+ -+| ..
T Consensus 80 v~vgGGirs~e~~~~~~~~l~---~a~rvvi--------------gT~a~~~p~~l~~~~~----vvsl--D~~~g~v~~ 136 (221)
T TIGR00734 80 LIADCGVRSPEDLETLPFTLE---FASRVVV--------------ATETLDITELLRECYT----VVSL--DFKEKFLDA 136 (221)
T ss_pred EEEcCccCCHHHHHHHHhhhc---cceEEee--------------cChhhCCHHHHHHhhh----EEEE--EeECCcccc
Confidence 888874 4455433322121 3555533 6777889999887751 2121 112 11
Q ss_pred CCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 009196 320 TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 320 ~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 399 (540)
.||.+ ...+++..+...|+ .+.+..-.+.+...| .|++.++++++.+ ++|||+.|||.|++|+.++.. .||
T Consensus 137 ~g~~~---~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G-~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~--~Ga 207 (221)
T TIGR00734 137 SGLFE---SLEEVRDFLNSFDY-GLIVLDIHSVGTMKG-PNLELLTKTLELS--EHPVMLGGGISGVEDLELLKE--MGV 207 (221)
T ss_pred ccccc---cHHHHHHHHHhcCC-EEEEEECCccccCCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHH--CCC
Confidence 36653 45667777888998 676766556555555 6899999999988 799999999999999999554 799
Q ss_pred CeeeecHHHHh
Q 009196 400 ASCMIARGALI 410 (540)
Q Consensus 400 DgVMIGRgaL~ 410 (540)
|+|++|++++.
T Consensus 208 ~~vivgsal~~ 218 (221)
T TIGR00734 208 SAVLVATAVHK 218 (221)
T ss_pred CEEEEhHHhhC
Confidence 99999999864
No 116
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.40 E-value=1.8e-06 Score=85.46 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=82.8
Q ss_pred EEEecCCCCCC----hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHH
Q 009196 315 TIKVRTGYFEG----KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWN 390 (540)
Q Consensus 315 tVKiR~G~~e~----~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~ 390 (540)
.|+..-||.+. ..+..++++.+++.|++.++|........ ....+++.++++++.+ ++||+..|||.|.+|+.
T Consensus 14 ~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~dld~~~~-g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~ 90 (233)
T PRK00748 14 CVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLVDLDGAKA-GKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVE 90 (233)
T ss_pred EEEccccccccceEecCCHHHHHHHHHHcCCCEEEEEeCCcccc-CCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHH
Confidence 44445566553 24788999999999999999988633211 2347899999999988 79999999999999999
Q ss_pred HHHhcCCCcCeeeecHHHHhCCCchHHHHhc
Q 009196 391 KHKSDCPELASCMIARGALIKPWIFTEIKEQ 421 (540)
Q Consensus 391 ~~l~~~~gaDgVMIGRgaL~nPwif~eik~~ 421 (540)
+++. .|||.|++|+.++.+|.++.++.+.
T Consensus 91 ~~~~--~Ga~~vilg~~~l~~~~~l~ei~~~ 119 (233)
T PRK00748 91 ALLD--AGVSRVIIGTAAVKNPELVKEACKK 119 (233)
T ss_pred HHHH--cCCCEEEECchHHhCHHHHHHHHHH
Confidence 9886 6999999999999999888887653
No 117
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.40 E-value=1.1e-05 Score=84.37 Aligned_cols=190 Identities=14% Similarity=0.123 Sum_probs=111.5
Q ss_pred CCcEEEccCCCCCC-HHHHHHHHHh-CCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcH-HHHHHHHHH
Q 009196 186 REKLYLAPLTTVGN-LPFRRVCKVL-GADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYP-DTLARTVEL 262 (540)
Q Consensus 186 knrliLAPM~~vtd-lpfR~l~~~~-Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p-~~~a~AA~~ 262 (540)
+-+|+.+||+.+++ ..|---+.+. |.+++-......+.+ +.....++....+.||+|.|.+..+ ..+.+..+.
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l----~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQV----KALLEETAELLGDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHH----HHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHH
Confidence 35799999999998 5655433333 455432111111110 0111112221246899999965322 123334444
Q ss_pred HHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCc
Q 009196 263 IDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGAS 342 (540)
Q Consensus 263 ~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvd 342 (540)
+. +.++..|-+..|.|. . ++.+++ .++.|...+.. ...++++++.|+|
T Consensus 78 i~-e~~v~~V~~~~G~P~-----------------~----~~~lk~-~Gi~v~~~v~s---------~~~A~~a~~~GaD 125 (320)
T cd04743 78 VR-AIKPTFALIAGGRPD-----------------Q----ARALEA-IGISTYLHVPS---------PGLLKQFLENGAR 125 (320)
T ss_pred HH-hcCCcEEEEcCCChH-----------------H----HHHHHH-CCCEEEEEeCC---------HHHHHHHHHcCCC
Confidence 44 458899988766653 1 133332 36666654432 4568889999999
Q ss_pred EEEEecccccCccCCC----cCHHHHH-HHHHHc----CCCceEEEeCCCCCHHHHHHHHhcCCCc--------Ceeeec
Q 009196 343 AVTVHGRTRQQRYSKL----ADWDYIY-QCARKA----SDDLQVLGNGDIYSYLDWNKHKSDCPEL--------ASCMIA 405 (540)
Q Consensus 343 aItVHgRtr~q~y~g~----adw~~I~-~i~~~~----~~~IPVIgNGdI~s~eDa~~~l~~~~ga--------DgVMIG 405 (540)
+|.+.|.-.- +..|+ .-|..+. .+.... ..+||||+.|||.+...+..++. .|| +||.+|
T Consensus 126 ~vVaqG~EAG-GH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaala--LGA~~~~~Ga~~GV~mG 202 (320)
T cd04743 126 KFIFEGRECG-GHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSA--LAAPLAERGAKVGVLMG 202 (320)
T ss_pred EEEEecCcCc-CCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHH--cCCcccccccccEEEEc
Confidence 9999876432 22221 2233322 222111 01599999999999999888776 456 899999
Q ss_pred HHHHhCCCc
Q 009196 406 RGALIKPWI 414 (540)
Q Consensus 406 RgaL~nPwi 414 (540)
..+|.-+..
T Consensus 203 TrFl~t~Es 211 (320)
T cd04743 203 TAYLFTEEA 211 (320)
T ss_pred cHHhcchhh
Confidence 999876554
No 118
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.38 E-value=1.5e-05 Score=79.08 Aligned_cols=197 Identities=13% Similarity=0.181 Sum_probs=125.8
Q ss_pred cccCcccCCcEEEccCCCCCCH-HHHHHHHHhCCC-EEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHH
Q 009196 179 EKKLIDFREKLYLAPLTTVGNL-PFRRVCKVLGAD-VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTL 256 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~vtdl-pfR~l~~~~Gad-l~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~ 256 (540)
-.|++.|++-- ..+|. +.-+...+.||| ++|--...+ . .+..--...+.+.....-+-+-+ |....++
T Consensus 17 VVKGv~F~~lr------d~GDpVelA~~Y~e~GADElvFlDItAs-~--~gr~~~~~vv~r~A~~vfiPltV-GGGI~s~ 86 (256)
T COG0107 17 VVKGVNFKNLR------DAGDPVELAKRYNEEGADELVFLDITAS-S--EGRETMLDVVERVAEQVFIPLTV-GGGIRSV 86 (256)
T ss_pred EEecccccchh------hcCChHHHHHHHHHcCCCeEEEEecccc-c--ccchhHHHHHHHHHhhceeeeEe-cCCcCCH
Confidence 34566666532 34443 222222345887 554333222 2 12222223344444443222222 4444455
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEe-------------cCCC
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKV-------------RTGY 322 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKi-------------R~G~ 322 (540)
..+-+++. +|+|-|-|| ++-+.+|+++.++-+..-..+ =+-+-.|- +.|-
T Consensus 87 eD~~~ll~--aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr 150 (256)
T COG0107 87 EDARKLLR--AGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGR 150 (256)
T ss_pred HHHHHHHH--cCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCC
Confidence 55556664 799999998 445678999888877663332 22333333 3333
Q ss_pred CCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCee
Q 009196 323 FEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC 402 (540)
Q Consensus 323 ~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgV 402 (540)
.+..-++.++++.+++.|+--|.+....+.+.-.| .|.+.++.+++.+ +||||++||.-++++..+.+.. +.||++
T Consensus 151 ~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G-yDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~-~~adAa 226 (256)
T COG0107 151 EDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAG-YDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFTE-GKADAA 226 (256)
T ss_pred cCCCcCHHHHHHHHHHcCCceEEEeeecccccccC-cCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHHh-cCccHH
Confidence 33445899999999999999999987666554444 7899999999999 7999999999999999999986 789988
Q ss_pred eec
Q 009196 403 MIA 405 (540)
Q Consensus 403 MIG 405 (540)
..|
T Consensus 227 LAA 229 (256)
T COG0107 227 LAA 229 (256)
T ss_pred Hhh
Confidence 766
No 119
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.37 E-value=2.8e-06 Score=82.21 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHH
Q 009196 255 TLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 334 (540)
Q Consensus 255 ~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~ 334 (540)
.+.++-+++ ++|+|.|=|-+ ..-.||..+.++++.+++.. .++..-+.+ .+=+.
T Consensus 53 T~~ev~~l~--~aGadIIAlDa--------------T~R~Rp~~l~~li~~i~~~~-~l~MADist---------~ee~~ 106 (192)
T PF04131_consen 53 TLKEVDALA--EAGADIIALDA--------------TDRPRPETLEELIREIKEKY-QLVMADIST---------LEEAI 106 (192)
T ss_dssp SHHHHHHHH--HCT-SEEEEE---------------SSSS-SS-HHHHHHHHHHCT-SEEEEE-SS---------HHHHH
T ss_pred CHHHHHHHH--HcCCCEEEEec--------------CCCCCCcCHHHHHHHHHHhC-cEEeeecCC---------HHHHH
Confidence 355555555 47999998863 12246788999999999887 778776654 23366
Q ss_pred HHHHcCCcEEE--EecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 335 DIGTWGASAVT--VHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 335 ~leeaGvdaIt--VHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
.+.++|+|.|. +.|-|..... ..+||+.++++++. ++|||+-|.|+|++++.++++ .||++|.|| +++.+|
T Consensus 107 ~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~tpe~a~~al~--~GA~aVVVG-sAITrP 179 (192)
T PF04131_consen 107 NAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIHTPEQAAKALE--LGAHAVVVG-SAITRP 179 (192)
T ss_dssp HHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--SHHHHHHHHH--TT-SEEEE--HHHH-H
T ss_pred HHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCCHHHHHHHHh--cCCeEEEEC-cccCCH
Confidence 78899999994 4555543333 55799999999974 599999999999999999998 799999999 677888
Q ss_pred CchHH
Q 009196 413 WIFTE 417 (540)
Q Consensus 413 wif~e 417 (540)
++..+
T Consensus 180 ~~It~ 184 (192)
T PF04131_consen 180 QEITK 184 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75443
No 120
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.34 E-value=5.7e-06 Score=87.21 Aligned_cols=194 Identities=13% Similarity=0.112 Sum_probs=116.3
Q ss_pred cccCcccCCcEEEccCCCCCCHHHHH-HHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcH----
Q 009196 179 EKKLIDFREKLYLAPLTTVGNLPFRR-VCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYP---- 253 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~vtdlpfR~-l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p---- 253 (540)
-...+.++-+++.+||..++....-- .|+..|.+ +++-...... ...+|..-.+.....|+.++.+++.+
T Consensus 7 ~~~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG-~ia~~~~~~e----~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~ 81 (336)
T COG2070 7 FILLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLG-IIASGGLPAE----QLRAEIRKIRALTDKPFVANNFGSAPAPVN 81 (336)
T ss_pred hhcccCccCCeecCCccccCcHHHHHHHhccCCcc-ccccccCCHH----HHHHHHHHHHHhcCCcchhcccccccccch
Confidence 34456778899999999999876553 33444556 2221111111 11111111111233454444444221
Q ss_pred --------HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCC
Q 009196 254 --------DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG 325 (540)
Q Consensus 254 --------~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~ 325 (540)
..+...+..+.+.+|+-.+-..+|- .|. +++..++. .++.|.+++-.
T Consensus 82 ~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~----------------~~~---~~i~~~~~-~g~~v~~~v~~----- 136 (336)
T COG2070 82 VNILVARRNAAEAGVDAIIEGAGVPVVSTSFGA----------------PPA---EFVARLKA-AGIKVIHSVIT----- 136 (336)
T ss_pred hheecccccchHHhhhhHHhcCCCCEEeccCCC----------------CcH---HHHHHHHH-cCCeEEEEeCC-----
Confidence 3333333333333455444444332 122 23334433 46667766543
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCC-----CcCHHHHHHHHHHcCCC-ceEEEeCCCCCHHHHHHHHhcCCCc
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK-----LADWDYIYQCARKASDD-LQVLGNGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g-----~adw~~I~~i~~~~~~~-IPVIgNGdI~s~eDa~~~l~~~~ga 399 (540)
...++++++.|+|.|..+|-.. ++..+ +.-...+.+|++.+ + ||||+.|||.|.+++..++. -||
T Consensus 137 ----~~~A~~~~~~G~d~vI~~g~eA-GGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg~~i~AAla--lGA 207 (336)
T COG2070 137 ----VREALKAERAGADAVIAQGAEA-GGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADGRGIAAALA--LGA 207 (336)
T ss_pred ----HHHHHHHHhCCCCEEEecCCcC-CCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccChHHHHHHHH--hcc
Confidence 4678999999999999987432 22222 22367889999999 6 99999999999999999998 799
Q ss_pred CeeeecHHHHhC
Q 009196 400 ASCMIARGALIK 411 (540)
Q Consensus 400 DgVMIGRgaL~n 411 (540)
|+|.+|..++.=
T Consensus 208 ~gVq~GT~Fl~t 219 (336)
T COG2070 208 DGVQMGTRFLAT 219 (336)
T ss_pred HHHHhhhhhhcc
Confidence 999999988764
No 121
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.33 E-value=1.7e-05 Score=88.44 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=112.7
Q ss_pred hhhhhcccCCCeEEEEecCCcHH--H--------HHHHHHHHHHhCCCCEEEecCCC---CCcccccCCccccccCCchH
Q 009196 232 WALLRRHSSEDLFGVQICGAYPD--T--------LARTVELIDQQCTVDFIDINMGC---PIDIVVNKGAGSCLLTKPMR 298 (540)
Q Consensus 232 ~~ll~~~~~e~p~~vQL~G~~p~--~--------~a~AA~~~~~~aG~D~IDIN~GC---P~~~v~~~G~GsaLl~~p~~ 298 (540)
+.+++.-..+.-+-+|+.|.--. + +..+.+++ .+|+|-|=||..- |--. +-++-..+|++
T Consensus 303 ~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l--~~GadkV~i~s~Av~~~~~~-----~~~~~~~~p~~ 375 (538)
T PLN02617 303 LEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYF--RSGADKISIGSDAVYAAEEY-----IASGVKTGKTS 375 (538)
T ss_pred HHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHH--HcCCCEEEEChHHHhChhhh-----hccccccCHHH
Confidence 34454444444456788885322 2 23344444 5799999998431 2111 11113457899
Q ss_pred HHHHHHHhccc-ccccEE---------------------------------EEecCCCCC-ChhHHHHHHHHHHHcCCcE
Q 009196 299 MKGIIEATSGT-VDKPIT---------------------------------IKVRTGYFE-GKNRIDSLIADIGTWGASA 343 (540)
Q Consensus 299 l~eIv~av~~~-v~iPVt---------------------------------VKiR~G~~e-~~~~~~~la~~leeaGvda 343 (540)
+.++.+..-.. +=+-|- |.+. ||.+ ...++.++++.+++.|+..
T Consensus 376 i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-gg~~~~~~~~~~~~~~~~~~Gage 454 (538)
T PLN02617 376 IEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVK-GGREGRPIGAYELAKAVEELGAGE 454 (538)
T ss_pred HHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEe-cCcccCCCCHHHHHHHHHhcCCCE
Confidence 99999887433 211111 2223 3333 3457899999999999999
Q ss_pred EEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 344 VTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 344 ItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
|.+..-.+.+...| .|.+.++.+++.+ ++|||++||+.+++|+.+++.. ++||+++.|
T Consensus 455 il~t~id~DGt~~G-~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~-~~~~a~~aa 512 (538)
T PLN02617 455 ILLNCIDCDGQGKG-FDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSK-TNASAALAA 512 (538)
T ss_pred EEEeeccccccccC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhc-CCccEEEEE
Confidence 99988888877766 7899999999998 7999999999999999999986 899999988
No 122
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.30 E-value=1.7e-05 Score=80.72 Aligned_cols=157 Identities=12% Similarity=0.140 Sum_probs=104.9
Q ss_pred eEEEEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCC------cccccc--CCchHHHHHHHHhccc-cc
Q 009196 243 LFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG------AGSCLL--TKPMRMKGIIEATSGT-VD 311 (540)
Q Consensus 243 p~~vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G------~GsaLl--~~p~~l~eIv~av~~~-v~ 311 (540)
.++.=|... +.+...++++.+. +.|+|.||| |-|.+.-.-|| +--+|- -+.+.+.++++++++. .+
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~-~~Gad~iEl--GiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~ 87 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLI-EAGADALEL--GVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPN 87 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEE--CCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 355555544 5677888888876 689999999 77764322222 001111 1456788999999876 68
Q ss_pred ccEEEEecCCCCCC--hhHHHHHHHHHHHcCCcEEEEecc--------------------------cc------------
Q 009196 312 KPITIKVRTGYFEG--KNRIDSLIADIGTWGASAVTVHGR--------------------------TR------------ 351 (540)
Q Consensus 312 iPVtVKiR~G~~e~--~~~~~~la~~leeaGvdaItVHgR--------------------------tr------------ 351 (540)
+|+.. +++... ..-..++++.+.++|++.|++|.= |.
T Consensus 88 ~plv~---m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 88 IPIGL---LTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred CCEEE---EEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC
Confidence 88652 122211 012356777788888888877631 00
Q ss_pred -------cCccCCC------cCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 352 -------QQRYSKL------ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 352 -------~q~y~g~------adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
..+++|. ...+.++++++.. +.||+..|||.|++++.++.+ .|||+|.+|++++
T Consensus 165 gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~--~GADgvVvGSaiv 231 (256)
T TIGR00262 165 GFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAID--AGADGVIVGSAIV 231 (256)
T ss_pred CCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHH--cCCCEEEECHHHH
Confidence 0123332 2367889999887 689999999999999999776 7999999999874
No 123
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.28 E-value=3.1e-06 Score=84.39 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCC-CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSK-LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g-~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
+..++++.+.+.|++.|++ |.....+.+ ..+++.++++.+.+ .+|++.+|||+|.+++..++. .|||.|+||.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i--~dl~~~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~--~Ga~~v~iGs 106 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHL--VDLDGAFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLD--LGVDRVILGT 106 (241)
T ss_pred CHHHHHHHHHHcCCCEEEE--EechhhhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHH--cCCCEEEECh
Confidence 5788999999999999855 444433322 46799999999988 699999999999999999886 7999999999
Q ss_pred HHHhCCCchHHHHhc
Q 009196 407 GALIKPWIFTEIKEQ 421 (540)
Q Consensus 407 gaL~nPwif~eik~~ 421 (540)
.++.+|+++.++.+.
T Consensus 107 ~~~~~~~~~~~i~~~ 121 (241)
T PRK13585 107 AAVENPEIVRELSEE 121 (241)
T ss_pred HHhhChHHHHHHHHH
Confidence 999999999999765
No 124
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.28 E-value=1.4e-05 Score=80.42 Aligned_cols=148 Identities=11% Similarity=0.101 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCcc------cccc--CCchHHHHHHHHhcccccccEEE--EecC
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAG------SCLL--TKPMRMKGIIEATSGTVDKPITI--KVRT 320 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~G------saLl--~~p~~l~eIv~av~~~v~iPVtV--KiR~ 320 (540)
.+.+.+.+.++.+. ++|+|.|+|++ |.....-+|-= -+|. -+.+...++++.+++..++|+.+ ++..
T Consensus 11 P~~~~~~~~~~~l~-~~Gad~iel~i--PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 11 PDLETTLEILKALV-EAGADIIELGI--PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 35578999999887 78999999986 66443333210 0111 12457889999999887888655 3322
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEec---c-----------------------c---------c-c---------Ccc
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHG---R-----------------------T---------R-Q---------QRY 355 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHg---R-----------------------t---------r-~---------q~y 355 (540)
-+. .-...+++.+.++|++.|+++. - | . . ...
T Consensus 88 ~~~---~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~ 164 (242)
T cd04724 88 ILQ---YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGV 164 (242)
T ss_pred HHH---hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCC
Confidence 100 0135678888888888888721 0 0 0 0 011
Q ss_pred CC------CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 356 SK------LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 356 ~g------~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+| +...+.++++++.. ++||+..|||++.+++.++.. . ||+|.+|.+++
T Consensus 165 tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~--~-ADgvVvGSaiv 219 (242)
T cd04724 165 TGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAK--Y-ADGVIVGSALV 219 (242)
T ss_pred CCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHc--c-CCEEEECHHHH
Confidence 11 11246778888865 799999999999999999665 5 99999997764
No 125
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.27 E-value=3.6e-05 Score=77.98 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=107.2
Q ss_pred CeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEec
Q 009196 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVR 319 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR 319 (540)
-|+...+...+++.+.+.++.+. ..||..+-|++| .+++.-.++|+++++++ ++++.+...
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRAL-EAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHH-HCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 45566666677888888887776 569999999865 13466678889998887 467888888
Q ss_pred CCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 009196 320 TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 320 ~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 399 (540)
.+|+ .+++.++++.|++.|+++| +|.+. +.+++..+++++.+ ++||++.+.+.++.++.++++. ..+
T Consensus 138 ~~~~--~~~a~~~~~~l~~~~i~~i-------EeP~~-~~d~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~-~~~ 204 (265)
T cd03315 138 RGWT--PKQAIRALRALEDLGLDYV-------EQPLP-ADDLEGRAALARAT--DTPIMADESAFTPHDAFRELAL-GAA 204 (265)
T ss_pred CCcC--HHHHHHHHHHHHhcCCCEE-------ECCCC-cccHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHh-CCC
Confidence 8884 5789999999999999888 33432 35788899999988 7999999999999999998876 789
Q ss_pred Ceeeec
Q 009196 400 ASCMIA 405 (540)
Q Consensus 400 DgVMIG 405 (540)
|.|++=
T Consensus 205 d~v~~k 210 (265)
T cd03315 205 DAVNIK 210 (265)
T ss_pred CEEEEe
Confidence 998763
No 126
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.26 E-value=1.9e-05 Score=87.28 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred cCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChh
Q 009196 249 CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKN 327 (540)
Q Consensus 249 ~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~ 327 (540)
.|..++.+.++..++ ++|+|.|.|++.. | +.....+.++.+++.. ++||.++--.
T Consensus 236 vg~~~~~~~~~~~l~--~ag~d~i~id~a~--------G-------~s~~~~~~i~~ik~~~~~~~v~aG~V~------- 291 (495)
T PTZ00314 236 ISTRPEDIERAAALI--EAGVDVLVVDSSQ--------G-------NSIYQIDMIKKLKSNYPHVDIIAGNVV------- 291 (495)
T ss_pred ECCCHHHHHHHHHHH--HCCCCEEEEecCC--------C-------CchHHHHHHHHHHhhCCCceEEECCcC-------
Confidence 355677766666655 5799999999742 1 2344567788888775 6777773211
Q ss_pred HHHHHHHHHHHcCCcEEEEe--cc----cccCccCCCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 328 RIDSLIADIGTWGASAVTVH--GR----TRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVH--gR----tr~q~y~g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
..+-++.+.++|+|+|.+. +. |+...-.|.+.+..+.++++.+. .++|||+.|||.++.|+.+++. .|||
T Consensus 292 -t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla--~GA~ 368 (495)
T PTZ00314 292 -TADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALA--LGAD 368 (495)
T ss_pred -CHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH--cCCC
Confidence 2355778889999999762 11 12111223455666666654431 1699999999999999999998 7999
Q ss_pred eeeecHHHHh
Q 009196 401 SCMIARGALI 410 (540)
Q Consensus 401 gVMIGRgaL~ 410 (540)
+||+|+.+..
T Consensus 369 ~Vm~G~~~a~ 378 (495)
T PTZ00314 369 CVMLGSLLAG 378 (495)
T ss_pred EEEECchhcc
Confidence 9999998655
No 127
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.26 E-value=1.5e-05 Score=87.06 Aligned_cols=142 Identities=18% Similarity=0.100 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhH
Q 009196 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNR 328 (540)
Q Consensus 250 G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~ 328 (540)
+-.++.+.++..++ ++|+|.|.|++... +...+.+.++.+++.. ++||.++--.
T Consensus 220 ~~~~~~~~r~~~L~--~aG~d~I~vd~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~G~v~-------- 274 (450)
T TIGR01302 220 GTREFDKERAEALV--KAGVDVIVIDSSHG---------------HSIYVIDSIKEIKKTYPDLDIIAGNVA-------- 274 (450)
T ss_pred cCchhHHHHHHHHH--HhCCCEEEEECCCC---------------cHhHHHHHHHHHHHhCCCCCEEEEeCC--------
Confidence 34567777777666 47999999986552 2245778888888874 7899885433
Q ss_pred HHHHHHHHHHcCCcEEEEe--cc----cccCccCCCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCe
Q 009196 329 IDSLIADIGTWGASAVTVH--GR----TRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELAS 401 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVH--gR----tr~q~y~g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDg 401 (540)
..+-++.+.++|+|+|-|. +. |+...-.+.+.+..+.++++.+. .++|||+.|||.++.|+.++|. .||++
T Consensus 275 t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla--~GA~~ 352 (450)
T TIGR01302 275 TAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALA--AGADA 352 (450)
T ss_pred CHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH--cCCCE
Confidence 2345778888999999764 21 22222234455667777755431 1699999999999999999998 79999
Q ss_pred eeecHHHHhCCCchHHH
Q 009196 402 CMIARGALIKPWIFTEI 418 (540)
Q Consensus 402 VMIGRgaL~nPwif~ei 418 (540)
||+|+.+..-.+...++
T Consensus 353 V~~G~~~a~~~e~pg~~ 369 (450)
T TIGR01302 353 VMLGSLLAGTTESPGEY 369 (450)
T ss_pred EEECchhhcCCcCCCce
Confidence 99998887766665554
No 128
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.24 E-value=1.4e-05 Score=88.56 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHH
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLI 333 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la 333 (540)
+.+.++..++ ++|+|.|.|- +. .| ..+.+.+.|+.+++.++.++.|+.-. - ...+-+
T Consensus 242 ~~~~ra~~Lv--~aGvd~i~vd--~a------~g-------~~~~~~~~i~~ir~~~~~~~~V~aGn--V----~t~e~a 298 (502)
T PRK07107 242 DYAERVPALV--EAGADVLCID--SS------EG-------YSEWQKRTLDWIREKYGDSVKVGAGN--V----VDREGF 298 (502)
T ss_pred hHHHHHHHHH--HhCCCeEeec--Cc------cc-------ccHHHHHHHHHHHHhCCCCceEEecc--c----cCHHHH
Confidence 3445555544 4799999985 11 12 23455688888888776555554422 1 123456
Q ss_pred HHHHHcCCcEEEE--ecc----cccCccCCCcCHHHHHHHHHHc-------CCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 334 ADIGTWGASAVTV--HGR----TRQQRYSKLADWDYIYQCARKA-------SDDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 334 ~~leeaGvdaItV--HgR----tr~q~y~g~adw~~I~~i~~~~-------~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
+.|.++|+|+|.| |+. ||.+.-.+.+.+..+.+|++++ ..++|||+-|||.+.-|+.++|. .|||
T Consensus 299 ~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla--~GA~ 376 (502)
T PRK07107 299 RYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA--MGAD 376 (502)
T ss_pred HHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH--cCCC
Confidence 7788899999987 333 3445555667788888888754 22389999999999999999998 7999
Q ss_pred eeeecHHHHhC
Q 009196 401 SCMIARGALIK 411 (540)
Q Consensus 401 gVMIGRgaL~n 411 (540)
+||+||.+-.-
T Consensus 377 ~vm~G~~~ag~ 387 (502)
T PRK07107 377 FIMLGRYFARF 387 (502)
T ss_pred eeeeChhhhcc
Confidence 99999988663
No 129
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.24 E-value=2.7e-05 Score=75.46 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=97.9
Q ss_pred EEecCCcHHHHHHHHHHHHHhCCCCEEEec-CCCCCcccccCCccccccCCchHHHHHHHHhcccccccEE--EEecCCC
Q 009196 246 VQICGAYPDTLARTVELIDQQCTVDFIDIN-MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT--IKVRTGY 322 (540)
Q Consensus 246 vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN-~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVt--VKiR~G~ 322 (540)
+.|...++..+.+.++.+. .+|+|.|++- +-+|.-. +...-.++++.+++..+.|+. ++++-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~g~d~i~~~~~Dg~~~~------------~~~~~~~~v~~i~~~~~~~v~v~lm~~~-- 67 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVE-EAGADWIHVDVMDGHFVP------------NLTFGPPVLEALRKYTDLPIDVHLMVEN-- 67 (210)
T ss_pred chhhcCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCC------------CcccCHHHHHHHHhcCCCcEEEEeeeCC--
Confidence 5677889999999999887 7899999996 2233311 222334566666655566653 44431
Q ss_pred CCChhHHHHHHHHHHHcCCcEEEEecccc--------------------------c-------------------CccCC
Q 009196 323 FEGKNRIDSLIADIGTWGASAVTVHGRTR--------------------------Q-------------------QRYSK 357 (540)
Q Consensus 323 ~e~~~~~~~la~~leeaGvdaItVHgRtr--------------------------~-------------------q~y~g 357 (540)
..++++.+.++|++.|++|+... . .+.++
T Consensus 68 ------~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg 141 (210)
T TIGR01163 68 ------PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGG 141 (210)
T ss_pred ------HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCc
Confidence 24567777788888888886420 0 00112
Q ss_pred -CcCHH---HHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 358 -LADWD---YIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 358 -~adw~---~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
..+|. .+.++++.+. .++||+..||| +++.+.+++. .|||+|.+||+++..|.....++
T Consensus 142 ~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI-~~env~~l~~--~gad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 142 QKFIPDTLEKIREVRKMIDENGLSILIEVDGGV-NDDNARELAE--AGADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCceEEEECCc-CHHHHHHHHH--cCCCEEEEChHHhCCCCHHHHHH
Confidence 12343 3444544431 13799999999 5799999775 89999999999998777655544
No 130
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.24 E-value=0.00012 Score=74.51 Aligned_cols=178 Identities=12% Similarity=0.097 Sum_probs=114.6
Q ss_pred HHHHHHhCCCEEEeccceechhc-cCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCc
Q 009196 203 RRVCKVLGADVTCGEMAMCTNLL-QGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID 281 (540)
Q Consensus 203 R~l~~~~Gadl~~TEmi~a~~l~-~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~ 281 (540)
-+.+...||+.+ .++.++-. .|+......++.. -.-|+...=+-.++.+..+ +. .+|+|+|=|.+.
T Consensus 76 A~~~~~~GA~ai---svlte~~~f~g~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~----a~-~~GAD~VlLi~~---- 142 (260)
T PRK00278 76 AKAYEAGGAACL---SVLTDERFFQGSLEYLRAARAA-VSLPVLRKDFIIDPYQIYE----AR-AAGADAILLIVA---- 142 (260)
T ss_pred HHHHHhCCCeEE---EEecccccCCCCHHHHHHHHHh-cCCCEEeeeecCCHHHHHH----HH-HcCCCEEEEEec----
Confidence 344455788754 22222222 2232222223322 3457665444455554322 22 579999988521
Q ss_pred ccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCH
Q 009196 282 IVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 361 (540)
Q Consensus 282 ~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw 361 (540)
.+ ++..+.++++..+. .+.-+.|-+.. .. ++ .++.++|++.|.+|+|+... -..+.
T Consensus 143 ----------~l-~~~~l~~li~~a~~-lGl~~lvevh~-----~~---E~-~~A~~~gadiIgin~rdl~~---~~~d~ 198 (260)
T PRK00278 143 ----------AL-DDEQLKELLDYAHS-LGLDVLVEVHD-----EE---EL-ERALKLGAPLIGINNRNLKT---FEVDL 198 (260)
T ss_pred ----------cC-CHHHHHHHHHHHHH-cCCeEEEEeCC-----HH---HH-HHHHHcCCCEEEECCCCccc---ccCCH
Confidence 22 35678888888765 46666664443 12 22 44668899999999887532 23567
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 362 ~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
+.+.++.+.++..+|+|+-|||.+++++.+++. .|+|+|.||++++..+..-..++
T Consensus 199 ~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~--~Gad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 199 ETTERLAPLIPSDRLVVSESGIFTPEDLKRLAK--AGADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHH--cCCCEEEECHHHcCCCCHHHHHH
Confidence 888888888764579999999999999999876 79999999999998777654443
No 131
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.23 E-value=2.2e-05 Score=82.68 Aligned_cols=140 Identities=9% Similarity=0.035 Sum_probs=110.8
Q ss_pred CeEEEEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEE
Q 009196 242 DLFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIK 317 (540)
Q Consensus 242 ~p~~vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVK 317 (540)
.|+...+.+. .++.+.++|+.+. +.||+.|.|++|..... .+++++..++|+++++++ +.+|.+.
T Consensus 127 v~~~~~~~~~~~~~~~~~~~a~~~~-~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~vD 195 (357)
T cd03316 127 VRVYASGGGYDDSPEELAEEAKRAV-AEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLMVD 195 (357)
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 4455555444 5899999998887 67999999998754211 167888999999999987 5788888
Q ss_pred ecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCC
Q 009196 318 VRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCP 397 (540)
Q Consensus 318 iR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ 397 (540)
..-+|+ .+++.++++.+++.|+.+|- |.. .+.+++..+.+++.+ ++||++.+.+.+++++.+++.. .
T Consensus 196 aN~~~~--~~~a~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~--~ipi~~dE~~~~~~~~~~~i~~-~ 262 (357)
T cd03316 196 ANGRWD--LAEAIRLARALEEYDLFWFE-------EPV-PPDDLEGLARLRQAT--SVPIAAGENLYTRWEFRDLLEA-G 262 (357)
T ss_pred CCCCCC--HHHHHHHHHHhCccCCCeEc-------CCC-CccCHHHHHHHHHhC--CCCEEeccccccHHHHHHHHHh-C
Confidence 877774 57899999999998887763 322 234788889999988 7999999999999999999986 7
Q ss_pred CcCeeeec
Q 009196 398 ELASCMIA 405 (540)
Q Consensus 398 gaDgVMIG 405 (540)
.+|.|.+-
T Consensus 263 ~~d~v~~k 270 (357)
T cd03316 263 AVDIIQPD 270 (357)
T ss_pred CCCEEecC
Confidence 79988764
No 132
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.23 E-value=5.5e-05 Score=75.64 Aligned_cols=141 Identities=13% Similarity=0.208 Sum_probs=99.7
Q ss_pred EEEEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC-
Q 009196 244 FGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT- 320 (540)
Q Consensus 244 ~~vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~- 320 (540)
+-+|+.|. +.+++.++ + ..|++.|=| |++.. +|+++.++.+..-+ +-+++-.|-
T Consensus 74 ~pv~~gGGIrs~edv~~l---~--~~G~~~viv--------------Gtaa~-~~~~l~~~~~~~g~---ivvslD~~~g 130 (228)
T PRK04128 74 LKVQVGGGLRTYESIKDA---Y--EIGVENVII--------------GTKAF-DLEFLEKVTSEFEG---ITVSLDVKGG 130 (228)
T ss_pred CCEEEcCCCCCHHHHHHH---H--HCCCCEEEE--------------Cchhc-CHHHHHHHHHHcCC---EEEEEEccCC
Confidence 44677764 45555433 3 358888755 56666 89999999887632 334444433
Q ss_pred -----CCCC-ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 009196 321 -----GYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 394 (540)
Q Consensus 321 -----G~~e-~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 394 (540)
||.+ ......++++.+++. +..|.+..-.+.+...|+- ++.+.++ ++|||++|||.+.+|+.++..
T Consensus 131 ~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d------~l~~~~~-~~pviasGGv~~~~Dl~~l~~ 202 (228)
T PRK04128 131 RIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE------EIERFWG-DEEFIYAGGVSSAEDVKKLAE 202 (228)
T ss_pred eEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH------HHHHhcC-CCCEEEECCCCCHHHHHHHHH
Confidence 4544 334577899999988 9999999888888887743 4444433 699999999999999999665
Q ss_pred cCCCcCeeeecHHHHhCCCchHH
Q 009196 395 DCPELASCMIARGALIKPWIFTE 417 (540)
Q Consensus 395 ~~~gaDgVMIGRgaL~nPwif~e 417 (540)
.|+++|++|++++..---+.+
T Consensus 203 --~g~~gvivg~al~~g~~~~~~ 223 (228)
T PRK04128 203 --IGFSGVIIGKALYEGRISLEE 223 (228)
T ss_pred --CCCCEEEEEhhhhcCCcCHHH
Confidence 799999999998765433333
No 133
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.22 E-value=6.8e-05 Score=76.04 Aligned_cols=196 Identities=14% Similarity=0.089 Sum_probs=115.2
Q ss_pred cCCcEEEccCCCCCCHHHHHHH---HHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHH-------
Q 009196 185 FREKLYLAPLTTVGNLPFRRVC---KVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPD------- 254 (540)
Q Consensus 185 lknrliLAPM~~vtdlpfR~l~---~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~------- 254 (540)
+...+..-|+.+..+. +.+| .++|++-++.-...+.... .....+.++++.|.+..|.
T Consensus 23 iDh~~l~gp~~~~~~~--~~~~~~a~~~~~~~v~~~p~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (258)
T TIGR01949 23 MDHGVSNGPIKGLVDI--RKTVNEVAEGGADAVLLHKGIVRRGH----------RGYGKDVGLIIHLSASTSLSPDPNDK 90 (258)
T ss_pred CCCccccCCCCCcCCH--HHHHHHHHhcCCCEEEeCcchhhhcc----------cccCCCCcEEEEEcCCCCCCCCCCcc
Confidence 3444444477776664 4444 4578876654322222110 0012345567777443221
Q ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccc---ccccEEEEec-----CCCCCCh
Q 009196 255 TLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT---VDKPITIKVR-----TGYFEGK 326 (540)
Q Consensus 255 ~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~---v~iPVtVKiR-----~G~~e~~ 326 (540)
.+...++.+. +.|+|+|++-.- .|+ ....+.+ +.++++++. .++|+.|..- ++. .+.
T Consensus 91 ~~~~~v~~al-~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~-~~~ 155 (258)
T TIGR01949 91 RIVTTVEDAI-RMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDD-RDP 155 (258)
T ss_pred eeeeeHHHHH-HCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCccccc-ccH
Confidence 2333344454 579999988421 111 1112233 455555544 3788877432 222 122
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCC--CHHHHHHHHh---cCCCcCe
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY--SYLDWNKHKS---DCPELAS 401 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~--s~eDa~~~l~---~~~gaDg 401 (540)
......++...+.|+|+|-+. |. .+.+.++++.+.. ++||++.|||. |.+++.+.+. + .||+|
T Consensus 156 ~~~~~~~~~a~~~GADyikt~-------~~--~~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~-aGa~G 223 (258)
T TIGR01949 156 ELVAHAARLGAELGADIVKTP-------YT--GDIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAME-AGAAG 223 (258)
T ss_pred HHHHHHHHHHHHHCCCEEecc-------CC--CCHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHH-cCCcE
Confidence 344445677789999999874 22 3678899998877 69999999999 7666655442 3 79999
Q ss_pred eeecHHHHhCCCchHHHH
Q 009196 402 CMIARGALIKPWIFTEIK 419 (540)
Q Consensus 402 VMIGRgaL~nPwif~eik 419 (540)
+.+||.++..+....-++
T Consensus 224 ia~g~~i~~~~dp~~~~~ 241 (258)
T TIGR01949 224 VAVGRNIFQHDDPVGITK 241 (258)
T ss_pred EehhhHhhcCCCHHHHHH
Confidence 999999998877554443
No 134
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.20 E-value=6.3e-05 Score=74.16 Aligned_cols=130 Identities=10% Similarity=0.053 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC------C------
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT------G------ 321 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~------G------ 321 (540)
+++.+.|+.+. ++|.|+|.| |++.--+.+.+.++++++++.+++||.+-... +
T Consensus 11 e~~~~ia~~v~-~~gtDaI~V--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~ 75 (205)
T TIGR01769 11 DEIEKIAKNAK-DAGTDAIMV--------------GGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFF 75 (205)
T ss_pred HHHHHHHHHHH-hcCCCEEEE--------------cCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEE
Confidence 45566666666 689999988 22333366777777777777667777653211 0
Q ss_pred -----------------------------------------------------CCCChhHHHHHHHHHHHcCCcEEEEec
Q 009196 322 -----------------------------------------------------YFEGKNRIDSLIADIGTWGASAVTVHG 348 (540)
Q Consensus 322 -----------------------------------------------------~~e~~~~~~~la~~leeaGvdaItVHg 348 (540)
.+.+.+++..++...+..|++.|.+-.
T Consensus 76 ~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~ 155 (205)
T TIGR01769 76 MSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEA 155 (205)
T ss_pred EEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 001223455555555566666666533
Q ss_pred ccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 349 RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 349 Rtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
-+. +..+.+.++++++++.+ ++||+..|||+|++++.+++. .|||+|.+|
T Consensus 156 ~sG---a~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~--~GAD~VVVG 205 (205)
T TIGR01769 156 GSG---ASYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVL--AGADAIVTG 205 (205)
T ss_pred CCC---CCCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHH--cCCCEEEeC
Confidence 221 12335689999999998 799999999999999999776 689999987
No 135
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.20 E-value=8.1e-05 Score=80.48 Aligned_cols=211 Identities=10% Similarity=-0.008 Sum_probs=109.1
Q ss_pred cccCCcEEEccCC-CCCCHHHH-HHHHHhCCCEEEeccceechhccCChhhhhhhhcc-cCCCeEEEEecCC--cHHHHH
Q 009196 183 IDFREKLYLAPLT-TVGNLPFR-RVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH-SSEDLFGVQICGA--YPDTLA 257 (540)
Q Consensus 183 l~lknrliLAPM~-~vtdlpfR-~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~-~~e~p~~vQL~G~--~p~~~a 257 (540)
+.++-+++.|||. ++++..+= .+++..|.+.+=+-....+.+ ......++.. ..+.||+|.|+.+ ++....
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l----~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~ 85 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEV----EQAIERIQAALGNGEPYGVNLIHSPDEPELEE 85 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHH----HHHHHHHHHhccCCCCeEEeeecCCCCchhHH
Confidence 4567889999999 79887654 333333455443333222211 1112222222 2278999999864 333334
Q ss_pred HHHHHHHHhCCCCEEEecC-CCCCcc-cccCCccccccCCchHHHHHHHHhcccccccEEEEe-cC-------CCCCChh
Q 009196 258 RTVELIDQQCTVDFIDINM-GCPIDI-VVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV-RT-------GYFEGKN 327 (540)
Q Consensus 258 ~AA~~~~~~aG~D~IDIN~-GCP~~~-v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi-R~-------G~~e~~~ 327 (540)
...+++. +.|+..|+... +-|-+. ++-+..|... +... .+ .....|..|+ |. |.-. ..
T Consensus 86 ~~v~l~l-e~gV~~ve~sa~~~~~p~~~~~r~~G~~~--~~~g--~~------~~~~~ViakVsr~evAs~~f~ppp-~~ 153 (418)
T cd04742 86 GLVDLFL-RHGVRVVEASAFMQLTPALVRYRAKGLRR--DADG--RV------QIANRIIAKVSRPEVAEAFMSPAP-ER 153 (418)
T ss_pred HHHHHHH-HcCCCEEEeccccCCCcchhhHHhcCCcc--cccc--cc------cccceEEEecCChhhhhhhcCCCC-HH
Confidence 4455555 56898888752 111111 1100111000 0000 00 0011233333 11 1100 00
Q ss_pred ----------HHHHHHHHHHHcC-CcEEEEecccccCccCCC-cC---HHHHHHHHHHc------CCCceEEEeCCCCCH
Q 009196 328 ----------RIDSLIADIGTWG-ASAVTVHGRTRQQRYSKL-AD---WDYIYQCARKA------SDDLQVLGNGDIYSY 386 (540)
Q Consensus 328 ----------~~~~la~~leeaG-vdaItVHgRtr~q~y~g~-ad---w~~I~~i~~~~------~~~IPVIgNGdI~s~ 386 (540)
...+-|..+++.| +|.|++. ...++.++. .- +..|.++++.+ ..+||||+.|||.|+
T Consensus 154 ~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq--~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg 231 (418)
T cd04742 154 ILKKLLAEGKITEEQAELARRVPVADDITVE--ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTP 231 (418)
T ss_pred HHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc--ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCH
Confidence 0123344455556 6999996 233333321 12 33344444433 114999999999999
Q ss_pred HHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 387 LDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 387 eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
+++..++. -|||+|++|...+.=+.
T Consensus 232 ~~vaAA~a--lGAd~V~~GT~flat~E 256 (418)
T cd04742 232 EAAAAAFA--LGADFIVTGSINQCTVE 256 (418)
T ss_pred HHHHHHHH--cCCcEEeeccHHHhCcc
Confidence 99999997 79999999999987654
No 136
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.18 E-value=4e-05 Score=78.30 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=105.6
Q ss_pred eEEEEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCC------ccccccC--CchHHHHHHHHhcccccc
Q 009196 243 LFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG------AGSCLLT--KPMRMKGIIEATSGTVDK 312 (540)
Q Consensus 243 p~~vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G------~GsaLl~--~p~~l~eIv~av~~~v~i 312 (540)
.++.=|... +.+.+.+++..+. +.|+|.||| |-|.+.-.-|| +--+|-+ +.+.+.++++.+++..++
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~-~~Gad~iEl--GiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~ 92 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILD-KKGADIIEL--GIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKA 92 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-HCCCCEEEE--CCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC
Confidence 455555554 5678888888776 689999999 77765332222 1111221 456788899999877788
Q ss_pred cEEEEecCCCCCC--hhHHHHHHHHHHHcCCcEEEEecc--------------------------cc-------------
Q 009196 313 PITIKVRTGYFEG--KNRIDSLIADIGTWGASAVTVHGR--------------------------TR------------- 351 (540)
Q Consensus 313 PVtVKiR~G~~e~--~~~~~~la~~leeaGvdaItVHgR--------------------------tr------------- 351 (540)
|+.+ +++... .--..++++.+.++|++.|.||.= |.
T Consensus 93 p~vl---m~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~g 169 (263)
T CHL00200 93 PIVI---FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPG 169 (263)
T ss_pred CEEE---EecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC
Confidence 8642 233221 112456788888888888888641 00
Q ss_pred ------cCccCCCc------CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 352 ------QQRYSKLA------DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 352 ------~q~y~g~a------dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
..+.+|.. --+++.++++.+ ++||..-+||.+++++.++.. .|||||.||.+++.
T Consensus 170 FIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~--~GADGvVVGSalv~ 236 (263)
T CHL00200 170 CIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKG--WNINGIVIGSACVQ 236 (263)
T ss_pred cEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHh--cCCCEEEECHHHHH
Confidence 01122321 135678888877 799999999999999999665 78999999999874
No 137
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.17 E-value=2.9e-05 Score=86.02 Aligned_cols=133 Identities=13% Similarity=0.073 Sum_probs=93.5
Q ss_pred CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhH
Q 009196 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNR 328 (540)
Q Consensus 250 G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~ 328 (540)
|..++.+.++.+++ ++|+|.|-|.+. . | +...+.++++.+++.. +.+|.++-=.
T Consensus 244 g~~~~~~~r~~~l~--~ag~d~i~iD~~--~------g-------~~~~~~~~i~~ik~~~p~~~vi~g~v~-------- 298 (505)
T PLN02274 244 GTRESDKERLEHLV--KAGVDVVVLDSS--Q------G-------DSIYQLEMIKYIKKTYPELDVIGGNVV-------- 298 (505)
T ss_pred cCCccHHHHHHHHH--HcCCCEEEEeCC--C------C-------CcHHHHHHHHHHHHhCCCCcEEEecCC--------
Confidence 44567777777766 479999888652 1 1 3456668899998877 5777764211
Q ss_pred HHHHHHHHHHcCCcEEEEe--cc----cccC---ccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 009196 329 IDSLIADIGTWGASAVTVH--GR----TRQQ---RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVH--gR----tr~q---~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 399 (540)
..+-++.+.++|+|+|.|. .. |+.. ++.....+..+.++++.. ++|||+-|+|.+..|+.++|. .||
T Consensus 299 t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vpVIadGGI~~~~di~kAla--~GA 374 (505)
T PLN02274 299 TMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GVPVIADGGISNSGHIVKALT--LGA 374 (505)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHH--cCC
Confidence 1345778889999999773 22 2110 111123455677777776 699999999999999999998 799
Q ss_pred CeeeecHHHHhC
Q 009196 400 ASCMIARGALIK 411 (540)
Q Consensus 400 DgVMIGRgaL~n 411 (540)
|+||+|+.+..-
T Consensus 375 ~~V~vGs~~~~t 386 (505)
T PLN02274 375 STVMMGSFLAGT 386 (505)
T ss_pred CEEEEchhhccc
Confidence 999999877653
No 138
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.14 E-value=6.8e-05 Score=80.07 Aligned_cols=139 Identities=18% Similarity=0.125 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHH
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 332 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~l 332 (540)
+..+.+-++.+. ++|+|.|-++..- +...++..- .++..+.++++. .++||.+.- . - ..+.
T Consensus 140 ~~~~~e~a~~l~-eaGvd~I~vhgrt-----~~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG~---V-~----t~e~ 200 (368)
T PRK08649 140 PQRAQELAPTVV-EAGVDLFVIQGTV-----VSAEHVSKE-GEPLNLKEFIYE----LDVPVIVGG---C-V----TYTT 200 (368)
T ss_pred CcCHHHHHHHHH-HCCCCEEEEeccc-----hhhhccCCc-CCHHHHHHHHHH----CCCCEEEeC---C-C----CHHH
Confidence 344555666665 6899999998421 111222110 145555555554 378988722 1 1 1345
Q ss_pred HHHHHHcCCcEEEEeccccc----Cc-cC--CCcCHHHHHHHHHHcC--------CCceEEEeCCCCCHHHHHHHHhcCC
Q 009196 333 IADIGTWGASAVTVHGRTRQ----QR-YS--KLADWDYIYQCARKAS--------DDLQVLGNGDIYSYLDWNKHKSDCP 397 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~----q~-y~--g~adw~~I~~i~~~~~--------~~IPVIgNGdI~s~eDa~~~l~~~~ 397 (540)
++.+.++|||+|.+ ||... .+ .. +.+-+..+.++++... .++|||+.|||.+..|+.++|. .
T Consensus 201 A~~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla--l 277 (368)
T PRK08649 201 ALHLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA--C 277 (368)
T ss_pred HHHHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH--c
Confidence 66677899999977 44321 01 11 2234555666654310 1489999999999999999998 7
Q ss_pred CcCeeeecHHHHhCCC
Q 009196 398 ELASCMIARGALIKPW 413 (540)
Q Consensus 398 gaDgVMIGRgaL~nPw 413 (540)
|||+||+|+.++.-..
T Consensus 278 GAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 278 GADAVMLGSPLARAAE 293 (368)
T ss_pred CCCeecccchhccccc
Confidence 9999999999987443
No 139
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.14 E-value=3.5e-05 Score=82.19 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHH
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 332 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~l 332 (540)
+....+.++.+. ++|+|.|-|+.- .+.+.+.+. -.+|..+.++++. .++||.+.- . .+ .+.
T Consensus 141 ~~~~~e~a~~l~-eAGad~I~ihgr-----t~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G~---V-~t----~e~ 201 (369)
T TIGR01304 141 PQNAREIAPIVV-KAGADLLVIQGT-----LVSAEHVST-SGEPLNLKEFIGE----LDVPVIAGG---V-ND----YTT 201 (369)
T ss_pred CcCHHHHHHHHH-HCCCCEEEEecc-----chhhhccCC-CCCHHHHHHHHHH----CCCCEEEeC---C-CC----HHH
Confidence 345556666666 789999999831 123333111 1246655555554 478998722 1 11 234
Q ss_pred HHHHHHcCCcEEEEecccc--cC-ccC--CCcCHHHHHHHHHH-------cC-CCceEEEeCCCCCHHHHHHHHhcCCCc
Q 009196 333 IADIGTWGASAVTVHGRTR--QQ-RYS--KLADWDYIYQCARK-------AS-DDLQVLGNGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr--~q-~y~--g~adw~~I~~i~~~-------~~-~~IPVIgNGdI~s~eDa~~~l~~~~ga 399 (540)
+..+.++|+|+|.+ ||.. .. .+. +.+....|.+++.. .. ..+|||+.|+|.+..|+.+++. .||
T Consensus 202 A~~~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlA--lGA 278 (369)
T TIGR01304 202 ALHLMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIA--CGA 278 (369)
T ss_pred HHHHHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH--cCC
Confidence 55566699999983 3321 11 111 23344556665533 21 1399999999999999999998 699
Q ss_pred CeeeecHHHHhCC
Q 009196 400 ASCMIARGALIKP 412 (540)
Q Consensus 400 DgVMIGRgaL~nP 412 (540)
|+||+|+.++.=-
T Consensus 279 daV~iGt~~a~a~ 291 (369)
T TIGR01304 279 DAVVLGSPLARAA 291 (369)
T ss_pred CEeeeHHHHHhhh
Confidence 9999999987533
No 140
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.13 E-value=0.00012 Score=72.80 Aligned_cols=196 Identities=13% Similarity=0.101 Sum_probs=111.1
Q ss_pred cCCcEEE--ccCCCCCCHH-HHHHHHHhCCCEEEecccee---chhccCChhhhhhhhcccCCCeEEEEec--------C
Q 009196 185 FREKLYL--APLTTVGNLP-FRRVCKVLGADVTCGEMAMC---TNLLQGQASEWALLRRHSSEDLFGVQIC--------G 250 (540)
Q Consensus 185 lknrliL--APM~~vtdlp-fR~l~~~~Gadl~~TEmi~a---~~l~~g~~~e~~ll~~~~~e~p~~vQL~--------G 250 (540)
+..-+.+ .|+.+..+.. .-+.+.++|++.++.-...+ ...+.+ ..++.+.+. .
T Consensus 6 ~Dh~~~~~~~p~~~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~i~~p~ 72 (235)
T cd00958 6 VDHGIEHGFGPNPGLEDPEETVKLAAEGGADAVALTKGIARAYGREYAG-------------DIPLIVKLNGSTSLSPKD 72 (235)
T ss_pred cCCcccccCCCCccccCHHHHHHHHHhcCCCEEEeChHHHHhcccccCC-------------CCcEEEEECCCCCCCCCC
Confidence 3445555 8998877753 22344457887664321111 111111 112332222 1
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEe--cCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC-CCC----
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDI--NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT-GYF---- 323 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDI--N~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~-G~~---- 323 (540)
.+...+...++.+. ..|+|+|++ |.|-. + . ....+.+.++.+..+ ..++|+.+=... |..
T Consensus 73 ~~~~~~~~~v~~a~-~~Ga~~v~~~~~~~~~-~------~----~~~~~~i~~v~~~~~-~~g~~~iie~~~~g~~~~~~ 139 (235)
T cd00958 73 DNDKVLVASVEDAV-RLGADAVGVTVYVGSE-E------E----REMLEELARVAAEAH-KYGLPLIAWMYPRGPAVKNE 139 (235)
T ss_pred CCchhhhcCHHHHH-HCCCCEEEEEEecCCc-h------H----HHHHHHHHHHHHHHH-HcCCCEEEEEeccCCcccCc
Confidence 23344444455555 579999954 43310 0 0 011223333333332 247888875543 110
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCC--CCHHH----HHHHHhcCC
Q 009196 324 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDI--YSYLD----WNKHKSDCP 397 (540)
Q Consensus 324 e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI--~s~eD----a~~~l~~~~ 397 (540)
.+.......++...+.|+|.|-+. |+ .+++.++++++.. ++||++.||+ .|.++ +.++++ .
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~-------~~--~~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~--~ 206 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTK-------YT--GDAESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAME--A 206 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEec-------CC--CCHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHH--c
Confidence 012333444777889999999883 22 2688899999887 6999999987 67766 555554 8
Q ss_pred CcCeeeecHHHHhCCCchHHHH
Q 009196 398 ELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 398 gaDgVMIGRgaL~nPwif~eik 419 (540)
||+||.+||.++..|.....++
T Consensus 207 Ga~gv~vg~~i~~~~dp~~~~~ 228 (235)
T cd00958 207 GAAGVAVGRNIFQRPDPVAMLR 228 (235)
T ss_pred CCcEEEechhhhcCCCHHHHHH
Confidence 9999999999998886544443
No 141
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.12 E-value=1.2e-05 Score=80.41 Aligned_cols=99 Identities=12% Similarity=0.154 Sum_probs=79.5
Q ss_pred EEEecCCCCCChh---HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 009196 315 TIKVRTGYFEGKN---RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 391 (540)
Q Consensus 315 tVKiR~G~~e~~~---~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 391 (540)
.|+..-||.+... +..++++.+.+. ++.|++-.+.... ...+.+++.++++.+.+ .+||++.|||.|.+|+.+
T Consensus 15 vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~ivDldga~-~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~ 90 (228)
T PRK04128 15 AVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVVDLDGAF-EGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKD 90 (228)
T ss_pred EEEEEeccccCceECCCHHHHHHHHHHh-CCEEEEEECcchh-cCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHH
Confidence 4555667755332 688999999998 9999986554221 12246899999999987 799999999999999999
Q ss_pred HHhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 392 HKSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 392 ~l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
++. .|+++|.||+.++ ||.+++++.+
T Consensus 91 l~~--~G~~~vivGtaa~-~~~~l~~~~~ 116 (228)
T PRK04128 91 AYE--IGVENVIIGTKAF-DLEFLEKVTS 116 (228)
T ss_pred HHH--CCCCEEEECchhc-CHHHHHHHHH
Confidence 876 7999999999999 9999999864
No 142
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.07 E-value=2.8e-05 Score=82.70 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=71.5
Q ss_pred CCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccC--------CCcCHHHH
Q 009196 294 TKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYS--------KLADWDYI 364 (540)
Q Consensus 294 ~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~--------g~adw~~I 364 (540)
..++-+.+.|..+|+.. +.||.||+-.+.. . ..++..+.++|+|.|||.|...-.+.+ |.+-...+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~--~---~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l 259 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRG--V---EDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYAL 259 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT--H---HHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCc--H---HHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHH
Confidence 35678889999999988 8999999987632 1 223333788999999999865332222 21212223
Q ss_pred HHHHHH-----cCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 365 YQCARK-----ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 365 ~~i~~~-----~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
.++.+. +.+.|.+|+.|++.++.|+.+++. -|||+|.+||++|.-
T Consensus 260 ~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kala--LGAD~v~igt~~liA 309 (368)
T PF01645_consen 260 ARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALA--LGADAVYIGTAALIA 309 (368)
T ss_dssp HHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHH--CT-SEEE-SHHHHHH
T ss_pred HHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHh--cCCCeeEecchhhhh
Confidence 444433 234699999999999999999998 799999999999853
No 143
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.07 E-value=0.00012 Score=70.92 Aligned_cols=154 Identities=13% Similarity=0.093 Sum_probs=93.8
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEEEecC-CCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCC
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFIDINM-GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY 322 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~-GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~ 322 (540)
+.+.|..-++..+.++++.+. .+|+|.|.+-+ ..+.. .+..+-.++++.+++.++.|+.|.+-..
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~-~~G~~~i~l~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~v~l~~~- 67 (211)
T cd00429 2 IAPSILSADFANLGEELKRLE-EAGADWIHIDVMDGHFV------------PNLTFGPPVVKALRKHTDLPLDVHLMVE- 67 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHH-HcCCCEEEEecccCCCC------------CccccCHHHHHHHHhhCCCcEEEEeeeC-
Confidence 457788899999999999887 78999999842 11110 0111112345555443344544433321
Q ss_pred CCChhHHHHHHHHHHHcCCcEEEEecccc--------------------------c-------------------CccCC
Q 009196 323 FEGKNRIDSLIADIGTWGASAVTVHGRTR--------------------------Q-------------------QRYSK 357 (540)
Q Consensus 323 ~e~~~~~~~la~~leeaGvdaItVHgRtr--------------------------~-------------------q~y~g 357 (540)
+..++++.+.++|++.|+||+... . .+.++
T Consensus 68 -----d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg 142 (211)
T cd00429 68 -----NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGG 142 (211)
T ss_pred -----CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCC
Confidence 123456666677888877775310 0 00011
Q ss_pred -CcCH---HHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 358 -LADW---DYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 358 -~adw---~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
..+| +.+.++++..+ .++||+..|||. ++.+.+++. .|+|+|.+||+++..+.....++
T Consensus 143 ~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~--~gad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 143 QKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAE--AGADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHH--cCCCEEEECHHHhCCCCHHHHHH
Confidence 1223 34455555441 038999999997 599998776 79999999999998877655544
No 144
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.05 E-value=2.7e-05 Score=78.31 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
+..++|+.+.+.|++.|+|-.-.... ....+.+.|+++.+.+ .+||...|||.|.+|+.+++. .||+-|.+|..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~--~Ga~kvviGs~ 106 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALA--TGCARVNIGTA 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHH--CCCCEEEECch
Confidence 67889999999999999998765443 3456889999999998 799999999999999999887 79999999999
Q ss_pred HHhCCCchHHHHh
Q 009196 408 ALIKPWIFTEIKE 420 (540)
Q Consensus 408 aL~nPwif~eik~ 420 (540)
++.||.++.++.+
T Consensus 107 ~l~~p~l~~~i~~ 119 (241)
T PRK14024 107 ALENPEWCARVIA 119 (241)
T ss_pred HhCCHHHHHHHHH
Confidence 9999999999865
No 145
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.04 E-value=0.00048 Score=66.95 Aligned_cols=183 Identities=9% Similarity=0.017 Sum_probs=112.4
Q ss_pred HHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcc
Q 009196 203 RRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI 282 (540)
Q Consensus 203 R~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~ 282 (540)
.+++...+.++.+-|..+.- ...........++....+..+++-+.-.++..+ .++.+. ++|+|+|=+|+-+|.
T Consensus 15 ~~~~~~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~--~~~~~~-~~Gad~i~vh~~~~~-- 88 (206)
T TIGR03128 15 LELAEKVADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEY--EAEQAF-AAGADIVTVLGVADD-- 88 (206)
T ss_pred HHHHHHcccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEeeccchHH--HHHHHH-HcCCCEEEEeccCCH--
Confidence 34555555555555552111 112223334444433224456655533355543 334444 679999999865431
Q ss_pred cccCCccccccCCchHHHHHHHHhcccccccEEEEe-cCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCH
Q 009196 283 VVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV-RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 361 (540)
Q Consensus 283 v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi-R~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw 361 (540)
..+.++++.+++ .++++.+-+ .. .+..+-+..+.+.|++.|.++.....+.+. +..+
T Consensus 89 --------------~~~~~~i~~~~~-~g~~~~~~~~~~------~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~-~~~~ 146 (206)
T TIGR03128 89 --------------ATIKGAVKAAKK-HGKEVQVDLINV------KDKVKRAKELKELGADYIGVHTGLDEQAKG-QNPF 146 (206)
T ss_pred --------------HHHHHHHHHHHH-cCCEEEEEecCC------CChHHHHHHHHHcCCCEEEEcCCcCcccCC-CCCH
Confidence 234566666665 477877743 22 123445566677899999997654444442 3457
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHH
Q 009196 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 417 (540)
Q Consensus 362 ~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~e 417 (540)
+.++++++.++ .++|...||| +++.+.++++ .|||+|.+||+++..+..-..
T Consensus 147 ~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~--~Ga~~v~vGsai~~~~d~~~~ 198 (206)
T TIGR03128 147 EDLQTILKLVK-EARVAVAGGI-NLDTIPDVIK--LGPDIVIVGGAITKAADPAEA 198 (206)
T ss_pred HHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHH--cCCCEEEEeehhcCCCCHHHH
Confidence 78888888875 4666669999 8899998776 799999999998876654333
No 146
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.02 E-value=3.3e-05 Score=78.49 Aligned_cols=89 Identities=18% Similarity=0.097 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++|+.+.+.|++.|++..-.+...-. ..+.+.++++.+.+ .+||++.|||.+.+|+.+++. .|++.|.||+
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~-~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~--~G~~~vvigs 104 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGS-EPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFS--LGVEKVSINT 104 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCC-cccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHH--CCCCEEEECh
Confidence 478899999999999999998765543333 36899999999987 799999999999999999885 6999999999
Q ss_pred HHHhCCCchHHHHh
Q 009196 407 GALIKPWIFTEIKE 420 (540)
Q Consensus 407 gaL~nPwif~eik~ 420 (540)
+++.+|.++.++.+
T Consensus 105 ~~~~~~~~~~~~~~ 118 (258)
T PRK01033 105 AALEDPDLITEAAE 118 (258)
T ss_pred HHhcCHHHHHHHHH
Confidence 99999999988865
No 147
>PLN02591 tryptophan synthase
Probab=98.02 E-value=0.00016 Score=73.45 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=97.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCC------cccccc--CCchHHHHHHHHhcccccccEEEEecCCC
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG------AGSCLL--TKPMRMKGIIEATSGTVDKPITIKVRTGY 322 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G------~GsaLl--~~p~~l~eIv~av~~~v~iPVtVKiR~G~ 322 (540)
.+.+...+.++.+. +.|+|.||| |-|.+.-.-|| .--+|- -+.+.+.++++.+++..++|+.+ +++
T Consensus 13 P~~e~~~~~~~~l~-~~Gad~iEl--GiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~il---m~Y 86 (250)
T PLN02591 13 PDLDTTAEALRLLD-ACGADVIEL--GVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVL---FTY 86 (250)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEE--CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE---Eec
Confidence 36678889888877 689999999 77765332222 111122 14567888999998777888653 222
Q ss_pred CCC--hhHHHHHHHHHHHcCCcEEEEec--------------------------cccc-------------------Ccc
Q 009196 323 FEG--KNRIDSLIADIGTWGASAVTVHG--------------------------RTRQ-------------------QRY 355 (540)
Q Consensus 323 ~e~--~~~~~~la~~leeaGvdaItVHg--------------------------Rtr~-------------------q~y 355 (540)
... ..-..+|++.+.++|++.+.|-. -|.. .+-
T Consensus 87 ~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 87 YNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred ccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCC
Confidence 211 11234566666666666665521 1100 011
Q ss_pred CC-----CcC-HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 356 SK-----LAD-WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 356 ~g-----~ad-w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+| +.+ -++++++++.. ++||+..-||.+++++.+++. .|||||.||.+++
T Consensus 167 TG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~--~GADGvIVGSalV 222 (250)
T PLN02591 167 TGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAG--WGADGVIVGSAMV 222 (250)
T ss_pred cCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHh--cCCCEEEECHHHH
Confidence 22 122 34588888876 799999999999999999665 6899999999987
No 148
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=97.99 E-value=0.00035 Score=76.10 Aligned_cols=210 Identities=8% Similarity=-0.050 Sum_probs=107.2
Q ss_pred cccCCcEEEccCC-CCCCHHHH-HHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCe-EEEEecCCc--HHHHH
Q 009196 183 IDFREKLYLAPLT-TVGNLPFR-RVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDL-FGVQICGAY--PDTLA 257 (540)
Q Consensus 183 l~lknrliLAPM~-~vtdlpfR-~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p-~~vQL~G~~--p~~~a 257 (540)
+.++-+++.+||. ++++..+= .+++..|.+.+=+-....+.+ ......++..-...| |+|.|+.+. +..-.
T Consensus 15 lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l----~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~ 90 (444)
T TIGR02814 15 YGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEV----EQAIHRIQQALPGGPAYGVNLIHSPSDPALEW 90 (444)
T ss_pred hCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHH----HHHHHHHHHhcCCCCceEEEecccCCCcccHH
Confidence 5567899999999 79887654 334434455443222221111 111222332223335 999999753 22222
Q ss_pred HHHHHHHHhCCCCEEEecCC---CCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec-C-------CCCCCh
Q 009196 258 RTVELIDQQCTVDFIDINMG---CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR-T-------GYFEGK 326 (540)
Q Consensus 258 ~AA~~~~~~aG~D~IDIN~G---CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR-~-------G~~e~~ 326 (540)
...+++. +.|+..|+.-.+ .|.- +.-+..|... +.+. .+ .....|..|+. . +... .
T Consensus 91 ~~v~l~l-~~~V~~veasa~~~~~p~~-v~~r~~G~~~--~~~g--~~------~~~~~ViakVsr~~vAs~f~~p~p-~ 157 (444)
T TIGR02814 91 GLVDLLL-RHGVRIVEASAFMQLTPAL-VRYRAKGLHR--DADG--RV------VIRNRLIAKVSRPEVAEAFMSPAP-A 157 (444)
T ss_pred HHHHHHH-HcCCCEEEeccccCCCcch-hhhhhccccc--cccc--cc------cccceEEEecCCHHHHHHhcCCCc-H
Confidence 3345554 568998887633 2321 1101111000 0000 00 00123333321 0 0000 0
Q ss_pred hH----------HHHHHHHHHHcC-CcEEEEecccccCccCCC-cCHHHHHHH---HHHc------CCCceEEEeCCCCC
Q 009196 327 NR----------IDSLIADIGTWG-ASAVTVHGRTRQQRYSKL-ADWDYIYQC---ARKA------SDDLQVLGNGDIYS 385 (540)
Q Consensus 327 ~~----------~~~la~~leeaG-vdaItVHgRtr~q~y~g~-adw~~I~~i---~~~~------~~~IPVIgNGdI~s 385 (540)
.. ..+=|..+++.| +|.|++- ...++.++. .-+..+..| ++.+ +.+||||+.|||.|
T Consensus 158 ~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve--~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t 235 (444)
T TIGR02814 158 HILQKLLAEGRITREEAELARRVPVADDICVE--ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGT 235 (444)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe--ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCC
Confidence 00 111234455566 5999884 333333331 123444444 3443 12599999999999
Q ss_pred HHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 386 YLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 386 ~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
++++..++. -|||+|++|...+.=+.
T Consensus 236 ~~~vaAAla--LGAdgV~~GT~flat~E 261 (444)
T TIGR02814 236 PEAAAAAFM--LGADFIVTGSVNQCTVE 261 (444)
T ss_pred HHHHHHHHH--cCCcEEEeccHHHhCcc
Confidence 999999997 79999999999987553
No 149
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.99 E-value=5.3e-05 Score=75.04 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=81.2
Q ss_pred EEEecCCCCCC----hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHH
Q 009196 315 TIKVRTGYFEG----KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWN 390 (540)
Q Consensus 315 tVKiR~G~~e~----~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~ 390 (540)
.|+..-|+.+. ..+..++|+.+++.|++.|+|......- .....+++.++++++.+ .+||...|+|.+.+++.
T Consensus 12 ~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~-~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~ 88 (230)
T TIGR00007 12 CVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGAK-EGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVE 88 (230)
T ss_pred EEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCccc-cCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHH
Confidence 44544455432 2367899999999999999997554321 12345889999999988 69999999999999999
Q ss_pred HHHhcCCCcCeeeecHHHHhCCCchHHHHhc
Q 009196 391 KHKSDCPELASCMIARGALIKPWIFTEIKEQ 421 (540)
Q Consensus 391 ~~l~~~~gaDgVMIGRgaL~nPwif~eik~~ 421 (540)
+++. .|||.|++|..++.+|.++.++.+.
T Consensus 89 ~~~~--~Ga~~vvlgs~~l~d~~~~~~~~~~ 117 (230)
T TIGR00007 89 KLLD--LGVDRVIIGTAAVENPDLVKELLKE 117 (230)
T ss_pred HHHH--cCCCEEEEChHHhhCHHHHHHHHHH
Confidence 9887 7999999999999999988887653
No 150
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.94 E-value=0.00072 Score=68.88 Aligned_cols=186 Identities=16% Similarity=0.146 Sum_probs=117.1
Q ss_pred HhCCCEEEeccceechhccCC-hhhhhhhh------cccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q 009196 208 VLGADVTCGEMAMCTNLLQGQ-ASEWALLR------RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPI 280 (540)
Q Consensus 208 ~~Gadl~~TEmi~a~~l~~g~-~~e~~ll~------~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~ 280 (540)
+.|+|-++-|-....|....- +.+.+.+. +..-..|++||+.-+++......|. .+|+|||-+|.-|-.
T Consensus 39 ~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~----a~ga~FIRv~~~~g~ 114 (257)
T TIGR00259 39 EGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAM----AVGAKFIRVNVLTGV 114 (257)
T ss_pred hCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHH----HhCCCEEEEccEeee
Confidence 369998888877777765422 22222111 1233458999999988664333332 468999999865533
Q ss_pred cccccCCccccccCCchHHHHHHHHhcccccc--cEEEEecCCCCCChhHHHHHHHHHHHcC-CcEEEEecccccCccCC
Q 009196 281 DIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK--PITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGRTRQQRYSK 357 (540)
Q Consensus 281 ~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i--PVtVKiR~G~~e~~~~~~~la~~leeaG-vdaItVHgRtr~q~y~g 357 (540)
- +...| -+.-+...+.+.-+.+...+.+ .|-+|...-. ....+.+.++.....| +|+|.|+|... ..
T Consensus 115 ~-~~d~G---~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l--~~~~~~e~a~~~~~~~~aDavivtG~~T----G~ 184 (257)
T TIGR00259 115 Y-ASDQG---IIEGNAGELIRYKKLLGSEVKILADIVVKHAVHL--GNRDLESIALDTVERGLADAVILSGKTT----GT 184 (257)
T ss_pred E-ecccc---cccccHHHHHHHHHHcCCCcEEEeceeecccCcC--CCCCHHHHHHHHHHhcCCCEEEECcCCC----CC
Confidence 2 22222 1223445555555555532222 2334433311 1234566677665555 99999998642 23
Q ss_pred CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 358 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 358 ~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
+.+|+.+.++++.++ ++||+.+||| +++.+.+++.. +|||.||.++= +|-
T Consensus 185 ~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l~~---adGviVgS~~K-~~G 234 (257)
T TIGR00259 185 EVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELLSI---ADGVIVATTIK-KDG 234 (257)
T ss_pred CCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHHhh---CCEEEECCCcc-cCC
Confidence 579999999998765 6899999999 89999998862 99999998864 444
No 151
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.94 E-value=0.00024 Score=69.17 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=59.2
Q ss_pred HHHHHHHcCCcEEEEecccc---cCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 332 LIADIGTWGASAVTVHGRTR---QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 332 la~~leeaGvdaItVHgRtr---~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
-+..+.+.|+|+|.++.... .+.+ .+..|+.++++++.+ ++||++.||| +++++.+++. .|+|+|++||++
T Consensus 107 ~a~~a~~~Gadyi~~g~v~~t~~k~~~-~~~g~~~l~~~~~~~--~ipvia~GGI-~~~~~~~~~~--~Ga~gvav~s~i 180 (201)
T PRK07695 107 EAIQAEKNGADYVVYGHVFPTDCKKGV-PARGLEELSDIARAL--SIPVIAIGGI-TPENTRDVLA--AGVSGIAVMSGI 180 (201)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCCCC-CCCCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHH--cCCCEEEEEHHH
Confidence 36678889999997643221 1122 235799999999887 6999999999 9999999886 799999999999
Q ss_pred HhCCC
Q 009196 409 LIKPW 413 (540)
Q Consensus 409 L~nPw 413 (540)
...+.
T Consensus 181 ~~~~~ 185 (201)
T PRK07695 181 FSSAN 185 (201)
T ss_pred hcCCC
Confidence 85443
No 152
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.94 E-value=0.00019 Score=79.22 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=92.5
Q ss_pred EecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCC
Q 009196 247 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEG 325 (540)
Q Consensus 247 QL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~ 325 (540)
-..+.+++.+ +.++.+. ++|+|.|=++.. +| +...+.+.++.+++.. +.||.++--.
T Consensus 221 aai~~~~~~~-e~a~~L~-~agvdvivvD~a--------~g-------~~~~vl~~i~~i~~~~p~~~vi~g~v~----- 278 (486)
T PRK05567 221 AAVGVGADNE-ERAEALV-EAGVDVLVVDTA--------HG-------HSEGVLDRVREIKAKYPDVQIIAGNVA----- 278 (486)
T ss_pred eecccCcchH-HHHHHHH-HhCCCEEEEECC--------CC-------cchhHHHHHHHHHhhCCCCCEEEeccC-----
Confidence 3444455554 4444444 579998754321 11 2345667888888877 8899884322
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecc------cccCccCCCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCC
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGR------TRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPE 398 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgR------tr~q~y~g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~g 398 (540)
..+-+..|.++|+++|.+-.. ++...-.+.+.+..+.++++.+. .++|||+.|||.++.|+.+++. .|
T Consensus 279 ---t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla--~G 353 (486)
T PRK05567 279 ---TAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALA--AG 353 (486)
T ss_pred ---CHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHH--hC
Confidence 234577788999999976321 12222234567888888877542 2699999999999999999998 79
Q ss_pred cCeeeecHHHHh
Q 009196 399 LASCMIARGALI 410 (540)
Q Consensus 399 aDgVMIGRgaL~ 410 (540)
||+||+|..+-.
T Consensus 354 A~~v~~G~~~a~ 365 (486)
T PRK05567 354 ASAVMLGSMLAG 365 (486)
T ss_pred CCEEEECccccc
Confidence 999999966543
No 153
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.92 E-value=0.002 Score=64.58 Aligned_cols=204 Identities=15% Similarity=0.129 Sum_probs=115.1
Q ss_pred cccCcccCCcEEEccCCCCCC-HHHHHHHHHhCCCEEEeccceechhccCC----hhhhhhhhcccCCCeEEEEecC-Cc
Q 009196 179 EKKLIDFREKLYLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCTNLLQGQ----ASEWALLRRHSSEDLFGVQICG-AY 252 (540)
Q Consensus 179 e~~~l~lknrliLAPM~~vtd-lpfR~l~~~~Gadl~~TEmi~a~~l~~g~----~~e~~ll~~~~~e~p~~vQL~G-~~ 252 (540)
++++.+|+.|+++-- ..|.+ .-.+.....-|++++..- .+..-.+. ..-|.++. ..+..+-..-.| .+
T Consensus 1 ki~g~~f~SRL~lGT-gky~s~~~m~~ai~aSg~evvTva---lRR~~~~~~~~~~~~~~~i~--~~~~~lLPNTaGc~t 74 (247)
T PF05690_consen 1 KIGGKEFRSRLILGT-GKYPSPEVMREAIEASGAEVVTVA---LRRVNLGSKPGGDNILDYID--RSGYTLLPNTAGCRT 74 (247)
T ss_dssp -ETTEEES-SEEEE--STSSSHHHHHHHHHHTT-SEEEEE---CCGSTTTS-TTCHHCCCCTT--CCTSEEEEE-TT-SS
T ss_pred CcCCEEeecceEEec-CCCCCHHHHHHHHHHhCCcEEEEE---EecccCCCCCCCccHHHHhc--ccCCEECCcCCCCCC
Confidence 356788999999843 23433 445555666799876422 22211111 22233332 234445555555 57
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHH
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 332 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~l 332 (540)
.++..+.|+++.+-.|-++|-|- |..+. -.|+-|+-.+.+-.+.+.+. ++-|.-=+. ++ .-+
T Consensus 75 A~EAv~~A~laRe~~~t~wIKLE-------Vi~D~--~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~----~D----~v~ 136 (247)
T PF05690_consen 75 AEEAVRTARLAREAFGTNWIKLE-------VIGDD--KTLLPDPIETLKAAEILVKE-GFVVLPYCT----DD----PVL 136 (247)
T ss_dssp HHHHHHHHHHHHHTTS-SEEEE---------BS-T--TT--B-HHHHHHHHHHHHHT-T-EEEEEE-----S-----HHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEE-------EeCCC--CCcCCChhHHHHHHHHHHHC-CCEEeecCC----CC----HHH
Confidence 89999999999865678888774 22221 23555554443333333221 322222121 11 468
Q ss_pred HHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
+++|+++|+.+|---|-. -+.-.|..+...++.+.+.+ ++|||.-+||-++.|+.++++ -|||+|++..+.-.-
T Consensus 137 akrL~d~GcaavMPlgsP-IGSg~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AME--lG~daVLvNTAiA~A 210 (247)
T PF05690_consen 137 AKRLEDAGCAAVMPLGSP-IGSGRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAME--LGADAVLVNTAIAKA 210 (247)
T ss_dssp HHHHHHTT-SEBEEBSSS-TTT---SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHH--TT-SEEEESHHHHTS
T ss_pred HHHHHHCCCCEEEecccc-cccCcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHH--cCCceeehhhHHhcc
Confidence 999999999999765421 12223556778899999998 799999999999999999998 799999999887543
No 154
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.92 E-value=4.1e-05 Score=76.02 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
+..++|++..+.|+|-|++-.-|.... .....+++|+++++.+ .||+...|||.|.+|+.++|. .|||=|.|..+
T Consensus 31 DpVelA~~Y~e~GADElvFlDItAs~~-gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~--aGADKVSINsa 105 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITASSE-GRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLR--AGADKVSINSA 105 (256)
T ss_pred ChHHHHHHHHHcCCCeEEEEecccccc-cchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHH--cCCCeeeeChh
Confidence 578999999999999999876653321 1246789999999999 799999999999999999887 79999999999
Q ss_pred HHhCCCchHHHHh
Q 009196 408 ALIKPWIFTEIKE 420 (540)
Q Consensus 408 aL~nPwif~eik~ 420 (540)
|+.||.+..++.+
T Consensus 106 Av~~p~lI~~~a~ 118 (256)
T COG0107 106 AVKDPELITEAAD 118 (256)
T ss_pred HhcChHHHHHHHH
Confidence 9999999999865
No 155
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.87 E-value=0.00035 Score=71.28 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=97.8
Q ss_pred eEEEEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCC------ccccccC--CchHHHHHHHHhc-cccc
Q 009196 243 LFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG------AGSCLLT--KPMRMKGIIEATS-GTVD 311 (540)
Q Consensus 243 p~~vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G------~GsaLl~--~p~~l~eIv~av~-~~v~ 311 (540)
.++.=|... +.+.+.+++..+. +.|+|.||| |-|.+.-.-|| .--+|-+ +.+.+.++++.++ +..+
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~-~~Gad~iEl--GiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~ 89 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALV-EAGADIIEL--GIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPT 89 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-HCCCCEEEE--CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 355555544 5678889888776 679999999 77764333222 1111211 4567788899998 5467
Q ss_pred ccEEEEecCCCCCC--hhHHHHHHHHHHHcCCcEEEEe--------------------------ccccc-----------
Q 009196 312 KPITIKVRTGYFEG--KNRIDSLIADIGTWGASAVTVH--------------------------GRTRQ----------- 352 (540)
Q Consensus 312 iPVtVKiR~G~~e~--~~~~~~la~~leeaGvdaItVH--------------------------gRtr~----------- 352 (540)
+|+.+ - ++... .--..+|++.+.++|++.+.|. ..|..
T Consensus 90 ~p~vl--m-~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~ 166 (258)
T PRK13111 90 IPIVL--M-TYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHAS 166 (258)
T ss_pred CCEEE--E-ecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 88753 1 22111 0123345555555565555542 11100
Q ss_pred --------CccCCC-----cC-HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 353 --------QRYSKL-----AD-WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 353 --------q~y~g~-----ad-w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
.+.+|. .. -+++.++++.. ++||+..+||.+++++.+++. .||||.||.+++
T Consensus 167 gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~---~ADGviVGSaiv 232 (258)
T PRK13111 167 GFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAA---VADGVIVGSALV 232 (258)
T ss_pred CcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHH---hCCEEEEcHHHH
Confidence 111221 22 45889999877 799999999999999999774 399999999886
No 156
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=1.1e-06 Score=93.20 Aligned_cols=215 Identities=17% Similarity=0.139 Sum_probs=151.3
Q ss_pred cccCCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCcH-----HHHH
Q 009196 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYP-----DTLA 257 (540)
Q Consensus 183 l~lknrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p-----~~~a 257 (540)
-.+++...++||..+.-.-|++. .+++.|+.+-++......+.-. +...-.|-++=.-|-.+ ..|.
T Consensus 198 ~~i~~i~~~~~~V~vi~ng~~~~-~e~y~Di~~~~~~~~~~~vmiA--------R~A~~n~SiF~~eG~~~~~~~~~~fl 268 (477)
T KOG2334|consen 198 DYIREIAQACQMVPVIVNGGSMD-IEQYSDIEDFQEKTGADSVMIA--------RAAESNPSIFREEGCLSEKEVIREFL 268 (477)
T ss_pred HHHHHHHHHhccceEeeccchhh-HHhhhhHHHHHHHhccchhhhh--------HhhhcCCceeeecCCchHHHHHHHHH
Confidence 45688888999988887788877 6678888776665544432111 11111111111112211 1222
Q ss_pred HHHHHHHHhCC-------CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHH
Q 009196 258 RTVELIDQQCT-------VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 258 ~AA~~~~~~aG-------~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~ 330 (540)
+.|-...+..| .-..++|+|||.......+.|.+++..+..+..+.+..+...+.|+ .|.|+-.+ ..+..
T Consensus 269 ~~a~~~dn~~~ntkycl~~il~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~--~~d~~ 345 (477)
T KOG2334|consen 269 RLAVQYDNHYGNTKYCLQRILRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVS--PADTV 345 (477)
T ss_pred HHHHHHhhcccchhHHHHHHhhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeC--cchhh
Confidence 22221111111 0135899999999988889999999999999999999999889998 89998653 35678
Q ss_pred HHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
.+++.+++.+ ++.+|+|....+.+-++.|+.++.+.... .+|++.||++....+- .+ .++.+||.+||...
T Consensus 346 ~~~~~le~~~--~l~i~~r~~f~r~~~pa~~~~~k~~l~~~--~~~~~~~~~~ye~~~~----~d-~lf~si~~~~~~~~ 416 (477)
T KOG2334|consen 346 NLAERLEDLS--ALAIHGRKIFDRPTDPAKWDTPKMVLADL--CVKTKANGPVYETVQR----TD-KLFSSIATARGQKY 416 (477)
T ss_pred hHhhhHHhcc--chhhhhcccccccCCCcCCCCHHHHHHHh--hhhhcCCCcchhhhhh----hh-hhhHHHhhhhhhhh
Confidence 8999999988 67788887656666789999999888777 6999999999988774 22 56789999999998
Q ss_pred CCCchHHH
Q 009196 411 KPWIFTEI 418 (540)
Q Consensus 411 nPwif~ei 418 (540)
+-.+|..=
T Consensus 417 ~ssi~~~n 424 (477)
T KOG2334|consen 417 NSSIWSPN 424 (477)
T ss_pred hccccCcc
Confidence 88777653
No 157
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.84 E-value=0.00085 Score=68.25 Aligned_cols=188 Identities=14% Similarity=0.073 Sum_probs=114.5
Q ss_pred HhCCCEEEeccceechhccCChh-hhhh-------hhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCC
Q 009196 208 VLGADVTCGEMAMCTNLLQGQAS-EWAL-------LRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCP 279 (540)
Q Consensus 208 ~~Gadl~~TEmi~a~~l~~g~~~-e~~l-------l~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP 279 (540)
+.|+|-++-|-....|+...-.. +.+. ++. .-.-|+|||+.-+++......|. .+|+|||-+|.-|=
T Consensus 40 ~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~-~~~~p~GVnvL~nd~~aalaiA~----A~ga~FIRv~~~~g 114 (254)
T PF03437_consen 40 EGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRR-EVSVPVGVNVLRNDPKAALAIAA----ATGADFIRVNVFVG 114 (254)
T ss_pred HCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHH-hCCCCEEeeeecCCCHHHHHHHH----HhCCCEEEecCEEc
Confidence 46999888777666666544322 1221 122 23579999999987664433332 45899999996554
Q ss_pred CcccccCCccccccCCchHHHHHHHHhcccccc--cEEEEecCCCCCChhHHHHHHHH-HHHcCCcEEEEecccccCccC
Q 009196 280 IDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK--PITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHGRTRQQRYS 356 (540)
Q Consensus 280 ~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i--PVtVKiR~G~~e~~~~~~~la~~-leeaGvdaItVHgRtr~q~y~ 356 (540)
... ... +.+..+...+.+.-+.+...+.+ .|.+|...... .....+.++. ++..++|+|.|+|... .
T Consensus 115 ~~~-~d~---G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~--~~~~~~~~~~a~~~~~aDaviVtG~~T----G 184 (254)
T PF03437_consen 115 AYV-TDE---GIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLA--TRDLEEAAKDAVERGGADAVIVTGKAT----G 184 (254)
T ss_pred eec-ccC---ccccccHHHHHHHHHHcCCCeEEEeeechhhcccCC--CCCHHHHHHHHHHhcCCCEEEECCccc----C
Confidence 321 111 12223344444444444332221 22233322221 1223344444 4788999999988642 2
Q ss_pred CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchH
Q 009196 357 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 416 (540)
Q Consensus 357 g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~ 416 (540)
.+++.+.+.++++.+ ++||+.++|+ |++-+.++|. -|||+.||..+-.+=.+.+
T Consensus 185 ~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~---~ADG~IVGS~~K~~G~~~n 238 (254)
T PF03437_consen 185 EPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLS---YADGAIVGSYFKKDGKWEN 238 (254)
T ss_pred CCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHH---hCCEEEEeeeeeeCCEeCC
Confidence 357889999999999 4999999999 8899999885 3899999987654444443
No 158
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.82 E-value=0.00023 Score=78.46 Aligned_cols=138 Identities=18% Similarity=0.166 Sum_probs=94.3
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCC
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY 322 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~ 322 (540)
.+-.+.|-..+...++..++. +|+|.|=|-..++ ++..+.++++.+++.. ++||.+ |.
T Consensus 215 ~Vgaav~~~~~~~~ra~~Lv~--aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~----g~ 273 (475)
T TIGR01303 215 RIGAAVGINGDVGGKAKALLD--AGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVA----GN 273 (475)
T ss_pred eehheeeeCccHHHHHHHHHH--hCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEE----ec
Confidence 334445555555666666654 5999887754432 3578889999999876 789988 32
Q ss_pred CCChhHHHHHHHHHHHcCCcEEEEecccc----cCccC--CCcCHHHHHHHH---HHcCCCceEEEeCCCCCHHHHHHHH
Q 009196 323 FEGKNRIDSLIADIGTWGASAVTVHGRTR----QQRYS--KLADWDYIYQCA---RKASDDLQVLGNGDIYSYLDWNKHK 393 (540)
Q Consensus 323 ~e~~~~~~~la~~leeaGvdaItVHgRtr----~q~y~--g~adw~~I~~i~---~~~~~~IPVIgNGdI~s~eDa~~~l 393 (540)
-- ..+-++.|.++|+|+|-|-++.. .+.++ +.+....+.+++ +.. ++|||+.|+|.++.|+.++|
T Consensus 274 ~~----t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kal 347 (475)
T TIGR01303 274 VV----SAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALAL 347 (475)
T ss_pred cC----CHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHH
Confidence 11 24557788899999998765421 12232 223344444443 223 59999999999999999999
Q ss_pred hcCCCcCeeeecHHHHh
Q 009196 394 SDCPELASCMIARGALI 410 (540)
Q Consensus 394 ~~~~gaDgVMIGRgaL~ 410 (540)
. .|||+||+|+-+-.
T Consensus 348 a--~GA~~vm~g~~~ag 362 (475)
T TIGR01303 348 A--AGASNVMVGSWFAG 362 (475)
T ss_pred H--cCCCEEeechhhcc
Confidence 8 79999999976644
No 159
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.81 E-value=0.0016 Score=64.87 Aligned_cols=147 Identities=9% Similarity=0.103 Sum_probs=95.4
Q ss_pred CCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCC-CCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 240 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 240 ~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~G-CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
...++.+-|.-.+|+.+...+ . ++|+|+|=+|+| +.. +...+.++.++.. +.-+.+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~---~-~~gad~v~vH~~q~~~----------------d~~~~~~~~i~~~-g~~iGl-- 120 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF---A-KAGASIFTFHIEQAST----------------IHLHRLIQQIKSA-GMKAGV-- 120 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH---H-HcCCCEEEEeeccccc----------------hhHHHHHHHHHHC-CCeEEE--
Confidence 445678999999999987766 2 469999999976 221 1223445554432 221222
Q ss_pred cCCCCCChhHHHHHHHHHHHcC-CcEE---EEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 009196 319 RTGYFEGKNRIDSLIADIGTWG-ASAV---TVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 394 (540)
Q Consensus 319 R~G~~e~~~~~~~la~~leeaG-vdaI---tVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 394 (540)
.+.+ .+..+.++.+.+.| +|.| +++..+..|.+ .+...+.+.++++..+ ++||.+-||| +.+.+.++++
T Consensus 121 s~~~----~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~-~~~~~~~i~~~~~~~~-~~~I~a~GGI-~~e~i~~l~~ 193 (229)
T PLN02334 121 VLNP----GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSF-IPSMMDKVRALRKKYP-ELDIEVDGGV-GPSTIDKAAE 193 (229)
T ss_pred EECC----CCCHHHHHHHHhccCCCEEEEEEEecCCCcccc-CHHHHHHHHHHHHhCC-CCcEEEeCCC-CHHHHHHHHH
Confidence 2221 11234455555553 9999 55654433432 2344677888887754 5899999999 8999999776
Q ss_pred cCCCcCeeeecHHHHhCCCchHHH
Q 009196 395 DCPELASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 395 ~~~gaDgVMIGRgaL~nPwif~ei 418 (540)
.|+|+|.+|++++..+.+...+
T Consensus 194 --aGad~vvvgsai~~~~d~~~~~ 215 (229)
T PLN02334 194 --AGANVIVAGSAVFGAPDYAEVI 215 (229)
T ss_pred --cCCCEEEEChHHhCCCCHHHHH
Confidence 7999999999988777654444
No 160
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.81 E-value=0.00021 Score=78.89 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=97.4
Q ss_pred EecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCC
Q 009196 247 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEG 325 (540)
Q Consensus 247 QL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~ 325 (540)
.+.|-..+....+..++ ..|+|.|=|.+. .|. -..+.++++.+++.. +.+|.+ |-
T Consensus 220 aav~~~~~~~~~a~~Lv--~aGvd~i~~D~a--------~~~-------~~~~~~~i~~ik~~~p~~~v~a----gn--- 275 (479)
T PRK07807 220 AAVGINGDVAAKARALL--EAGVDVLVVDTA--------HGH-------QEKMLEALRAVRALDPGVPIVA----GN--- 275 (479)
T ss_pred hhhccChhHHHHHHHHH--HhCCCEEEEecc--------CCc-------cHHHHHHHHHHHHHCCCCeEEe----ec---
Confidence 33444444444444444 358998776532 122 356788899998876 677776 21
Q ss_pred hhHHHHHHHHHHHcCCcEEEEeccc----ccCccC--CCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCC
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRT----RQQRYS--KLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPE 398 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRt----r~q~y~--g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~g 398 (540)
-.+.+-++.|.++|+|+|-|--.+ ..+.|+ +.+++..+.+|++... .++|||+-|+|.++.|+.++|. .|
T Consensus 276 -v~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~--~g 352 (479)
T PRK07807 276 -VVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALA--AG 352 (479)
T ss_pred -cCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH--cC
Confidence 122456777888999999763222 122333 3468899998887431 1699999999999999999998 79
Q ss_pred cCeeeecHHHHhCCCchH
Q 009196 399 LASCMIARGALIKPWIFT 416 (540)
Q Consensus 399 aDgVMIGRgaL~nPwif~ 416 (540)
||+||+|+.++.-..-..
T Consensus 353 a~~v~~g~~~ag~~Espg 370 (479)
T PRK07807 353 ASNVMIGSWFAGTYESPG 370 (479)
T ss_pred CCeeeccHhhccCccCCC
Confidence 999999998887654444
No 161
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.80 E-value=0.00013 Score=73.18 Aligned_cols=89 Identities=11% Similarity=0.124 Sum_probs=76.1
Q ss_pred HHHHHHHHHHH-cCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 328 RIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 328 ~~~~la~~lee-aGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
+..++|+.+.+ .|++.|+|-.-.... ...+.+.+.|+++.+.+ .+||..-|||+|.+|+.+++. .||+-|.||.
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~--~Ga~kvvigt 106 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAK-AQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFA--AGINYCIVGT 106 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccc-cCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHH--CCCCEEEECc
Confidence 56779999999 799999997654331 13447899999999987 799999999999999999887 7999999999
Q ss_pred HHHhCCCchHHHHhc
Q 009196 407 GALIKPWIFTEIKEQ 421 (540)
Q Consensus 407 gaL~nPwif~eik~~ 421 (540)
.++.||.+++++.+.
T Consensus 107 ~a~~~~~~l~~~~~~ 121 (234)
T PRK13587 107 KGIQDTDWLKEMAHT 121 (234)
T ss_pred hHhcCHHHHHHHHHH
Confidence 999999999998753
No 162
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.78 E-value=0.00076 Score=66.01 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=91.4
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCC
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF 323 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~ 323 (540)
+.+.|+..++..+.+.++.+. +.|+|.|.+-. .+| .+..+..+..+.++.+++.+..|+.|-+-..
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~-~~G~~~i~l~~--------~d~---~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~-- 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVE-AAGADWIHVDV--------MDG---HFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE-- 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHH-HcCCCEEEEeC--------ccC---CcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--
Confidence 667888999999999999887 78999999941 111 0111212234555555544433443333221
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEeccccc---------------------------------------------CccCCC
Q 009196 324 EGKNRIDSLIADIGTWGASAVTVHGRTRQ---------------------------------------------QRYSKL 358 (540)
Q Consensus 324 e~~~~~~~la~~leeaGvdaItVHgRtr~---------------------------------------------q~y~g~ 358 (540)
+..+++..+.++|++.|+||+.... .+.++.
T Consensus 72 ----d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~ 147 (220)
T PRK05581 72 ----NPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQ 147 (220)
T ss_pred ----CHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcc
Confidence 1233445556788888888864200 001111
Q ss_pred -cCHHHHHH---HHHHcCC---CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 359 -ADWDYIYQ---CARKASD---DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 359 -adw~~I~~---i~~~~~~---~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
.+|..+.. +++..+. +.+|..-|||+. +.+.+++. .|+|+|.+|++++..|.....++
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~--~GaD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 148 KFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAE--AGADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHH--cCCCEEEEChhhhCCCCHHHHHH
Confidence 13443333 3333311 134567899966 89988765 79999999999998887654443
No 163
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.77 E-value=0.00055 Score=69.88 Aligned_cols=136 Identities=13% Similarity=0.063 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccc---ccccEEEEec-----CCCCCChhH
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT---VDKPITIKVR-----TGYFEGKNR 328 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~---v~iPVtVKiR-----~G~~e~~~~ 328 (540)
..-++.+. +.|+|.|++-.- - |+. ..+.+.+.++++++. .++|+.|=.. +....+.+.
T Consensus 96 ~~~ve~A~-~~Gad~v~~~~~--------~--g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~ 161 (267)
T PRK07226 96 VGTVEEAI-KLGADAVSVHVN--------V--GSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEV 161 (267)
T ss_pred eecHHHHH-HcCCCEEEEEEe--------c--CCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHH
Confidence 33344444 569999988421 1 110 012233334444333 3788777321 111112334
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCC--CHHHHHHHHh---cCCCcCeee
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY--SYLDWNKHKS---DCPELASCM 403 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~--s~eDa~~~l~---~~~gaDgVM 403 (540)
....++.+.+.|+|+|-.. |.+ +.+.++++.+.. ++||++.|||. +++++.+++. + .||+|+.
T Consensus 162 i~~a~~~a~e~GAD~vKt~-------~~~--~~~~l~~~~~~~--~ipV~a~GGi~~~~~~~~l~~v~~~~~-aGA~Gis 229 (267)
T PRK07226 162 VAHAARVAAELGADIVKTN-------YTG--DPESFREVVEGC--PVPVVIAGGPKTDTDREFLEMVRDAME-AGAAGVA 229 (267)
T ss_pred HHHHHHHHHHHCCCEEeeC-------CCC--CHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHH-cCCcEEe
Confidence 5555677889999999553 433 567888888766 69999999999 8998888762 3 7999999
Q ss_pred ecHHHHhCCCchHHH
Q 009196 404 IARGALIKPWIFTEI 418 (540)
Q Consensus 404 IGRgaL~nPwif~ei 418 (540)
+||.++..|..-..+
T Consensus 230 ~gr~i~~~~~p~~~~ 244 (267)
T PRK07226 230 VGRNVFQHEDPEAIT 244 (267)
T ss_pred hhhhhhcCCCHHHHH
Confidence 999999887744444
No 164
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.77 E-value=0.00081 Score=67.13 Aligned_cols=129 Identities=14% Similarity=-0.003 Sum_probs=91.2
Q ss_pred HHHHHHHhCCCCEEEe--cCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC--CCCCChhHHHHHHH
Q 009196 259 TVELIDQQCTVDFIDI--NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT--GYFEGKNRIDSLIA 334 (540)
Q Consensus 259 AA~~~~~~aG~D~IDI--N~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~--G~~e~~~~~~~la~ 334 (540)
.++.+. ..|+|.||+ |.|+|.. .+.+.+.+-++++++.. .|+.+|+-+ +.- +.++...+++
T Consensus 79 e~~~Ai-~~GA~EiD~Vin~~~~~~------------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~~e~i~~a~~ 143 (221)
T PRK00507 79 EAKDAI-ANGADEIDMVINIGALKS------------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-TDEEKVKACE 143 (221)
T ss_pred HHHHHH-HcCCceEeeeccHHHhcC------------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-CHHHHHHHHH
Confidence 333443 458999995 4444432 34677777777777754 367788733 221 3456788888
Q ss_pred HHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 335 DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 335 ~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
.+.++|+|+|-..... ..+.+..+.++.+++.++.+++|.++|||.|++++.+++. .||+-+-..+|.
T Consensus 144 ~~~~agadfIKTsTG~----~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~--aGA~riGtS~~~ 211 (221)
T PRK00507 144 IAKEAGADFVKTSTGF----STGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIE--AGATRLGTSAGV 211 (221)
T ss_pred HHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHH--cCcceEccCcHH
Confidence 8999999988654221 1344778888888888866799999999999999999987 789988766554
No 165
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.76 E-value=0.00067 Score=67.76 Aligned_cols=59 Identities=7% Similarity=-0.078 Sum_probs=51.9
Q ss_pred CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHH
Q 009196 357 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 357 g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~ei 418 (540)
.+.+++.++.+++.+. ++||+..|||+|.+++.+++. .|||+|.+|..+..||.++.++
T Consensus 163 ~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~--aGAD~VVVGs~~~~dp~~~~~~ 221 (223)
T TIGR01768 163 EPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAE--AGADTIVTGNVIEEDVDKALET 221 (223)
T ss_pred CCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHH--cCCCEEEECcHHhhCHHHHHHh
Confidence 4456899999999875 599999999999999999775 6999999999999999887765
No 166
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.76 E-value=8e-05 Score=74.37 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++|+.+++.|++.++|..-.+.. ...+.+++.|.++.+.+ .+||...|||.|.+|+.+++. .||+-|.||.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~-~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~--~Ga~~Vvigt 103 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAK-EGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLD--AGADRVVIGT 103 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHC-CTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHH--TT-SEEEESH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcc-cCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHH--hCCCEEEeCh
Confidence 357889999999999999998654321 12346889999999998 699999999999999999887 7999999999
Q ss_pred HHHhCCCchHHHHh
Q 009196 407 GALIKPWIFTEIKE 420 (540)
Q Consensus 407 gaL~nPwif~eik~ 420 (540)
.++.||.++.++.+
T Consensus 104 ~~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 104 EALEDPELLEELAE 117 (229)
T ss_dssp HHHHCCHHHHHHHH
T ss_pred HHhhchhHHHHHHH
Confidence 99999999999875
No 167
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.75 E-value=0.004 Score=63.06 Aligned_cols=207 Identities=13% Similarity=0.099 Sum_probs=125.2
Q ss_pred cccccCcccCCcEEEccCCCCCC-HHHHHHHHHhCCCEEEeccceec-hhccCChhhhhhhhcccCCCeEEEEecC-CcH
Q 009196 177 SREKKLIDFREKLYLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCT-NLLQGQASEWALLRRHSSEDLFGVQICG-AYP 253 (540)
Q Consensus 177 p~e~~~l~lknrliLAPM~~vtd-lpfR~l~~~~Gadl~~TEmi~a~-~l~~g~~~e~~ll~~~~~e~p~~vQL~G-~~p 253 (540)
+..+++.+|.+|+++-- ..|.+ .-.+.....-|++++..-+=-.+ ....+...-|.++.. ....+-..-+| .+.
T Consensus 7 ~l~i~g~~f~SRL~lGT-gky~s~~~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~--~~~~~LPNTaGc~tA 83 (267)
T CHL00162 7 KLKIGNKSFNSRLMLGT-GKYKSLKDAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDW--NKLWLLPNTAGCQTA 83 (267)
T ss_pred ceEECCEEeecceEEec-CCCCCHHHHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhch--hccEECCcCcCCCCH
Confidence 46889999999999843 23333 34455555679987632211111 000122334444431 12222223333 467
Q ss_pred HHHHHHHHHHHHhC------CCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChh
Q 009196 254 DTLARTVELIDQQC------TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKN 327 (540)
Q Consensus 254 ~~~a~AA~~~~~~a------G~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~ 327 (540)
++.++.|+++.+-. +-++|-|- |..+ --.|+-|+-.+.+-.+.+. .--++|=-=+ .++
T Consensus 84 ~EAv~~A~laRe~~~~~~~~~~~wIKLE-------Vi~D--~~~LlPD~~etl~Aae~Lv---~eGF~VlPY~--~~D-- 147 (267)
T CHL00162 84 EEAIRMAFLGRELAKQLGQEDNNFVKLE-------VISD--PKYLLPDPIGTLKAAEFLV---KKGFTVLPYI--NAD-- 147 (267)
T ss_pred HHHHHHHHHHHHHhccccccCCCeEEEE-------EeCC--CcccCCChHHHHHHHHHHH---HCCCEEeecC--CCC--
Confidence 88999999887433 45666553 2111 1245656655444444332 2223331111 111
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
.-++++|+++|+.+|---|-. -+.-.|..+...++.|.+.. ++|||.-+||.+++|+..+++ -|||||+++.|
T Consensus 148 --~v~a~rLed~Gc~aVMPlgsP-IGSg~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmE--lGaDgVL~nSa 220 (267)
T CHL00162 148 --PMLAKHLEDIGCATVMPLGSP-IGSGQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAME--LGASGVLLNTA 220 (267)
T ss_pred --HHHHHHHHHcCCeEEeeccCc-ccCCCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHH--cCCCEEeecce
Confidence 468999999999999754421 11123556778889999886 799999999999999999998 79999999998
Q ss_pred HH
Q 009196 408 AL 409 (540)
Q Consensus 408 aL 409 (540)
..
T Consensus 221 Ia 222 (267)
T CHL00162 221 VA 222 (267)
T ss_pred ee
Confidence 87
No 168
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.72 E-value=0.0015 Score=65.23 Aligned_cols=148 Identities=11% Similarity=0.130 Sum_probs=100.3
Q ss_pred CeEEEEecCCcHHHHHHHHHHHHHhCCCCEE--EecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEe
Q 009196 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKV 318 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~I--DIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKi 318 (540)
..+.+.|.+.++..+.+-.+.+. .+|+|.| ||==|.=+++. .+| .++++++++.. ++|+.+|+
T Consensus 7 ~~i~pSi~~~d~~~l~~~~~~l~-~~~~~~~H~DimDg~fvpn~---~~G----------~~~v~~lr~~~~~~~lDvHL 72 (228)
T PTZ00170 7 AIIAPSILAADFSKLADEAQDVL-SGGADWLHVDVMDGHFVPNL---SFG----------PPVVKSLRKHLPNTFLDCHL 72 (228)
T ss_pred CEEehhHhhcCHHHHHHHHHHHH-HcCCCEEEEecccCccCCCc---CcC----------HHHHHHHHhcCCCCCEEEEE
Confidence 34677889999999999999997 6788875 44334322221 223 25677887777 88999998
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCcEEEEecccccC------------c--------------------------------
Q 009196 319 RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ------------R-------------------------------- 354 (540)
Q Consensus 319 R~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q------------~-------------------------------- 354 (540)
-+ .+...+++.+.++|++.||||+-+... +
T Consensus 73 m~------~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~ 146 (228)
T PTZ00170 73 MV------SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMT 146 (228)
T ss_pred CC------CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhh
Confidence 74 234567788899999999999753110 0
Q ss_pred ----cCCCc----CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 355 ----YSKLA----DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 355 ----y~g~a----dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
+.|.. .++.++++++..+ .+.|...||| +.+.+..+.+ .|||.+.+||++...+.
T Consensus 147 v~pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGGI-~~~ti~~~~~--aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 147 VEPGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDGGI-NLETIDIAAD--AGANVIVAGSSIFKAKD 209 (228)
T ss_pred cccCCCCcEecHHHHHHHHHHHHhcc-cCeEEECCCC-CHHHHHHHHH--cCCCEEEEchHHhCCCC
Confidence 00000 0233444445444 4778899999 6778888665 79999999999876665
No 169
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.72 E-value=0.001 Score=66.29 Aligned_cols=146 Identities=16% Similarity=0.194 Sum_probs=99.7
Q ss_pred EEEecCCcHHHHHHHHHHHHHhCCCCEE--EecCCCCCcccccCCccccccCCchHHHHHHHHhccc-ccccEEEEecCC
Q 009196 245 GVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT-VDKPITIKVRTG 321 (540)
Q Consensus 245 ~vQL~G~~p~~~a~AA~~~~~~aG~D~I--DIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~-v~iPVtVKiR~G 321 (540)
...|.+.+...+.+..+.+. ++|+|.| ||==|+=+++. .+| -++++++++. +++|+.|=+=.
T Consensus 3 ~pSil~ad~~~l~~~i~~l~-~~g~~~lH~DvmDG~Fvpn~---tfg----------~~~i~~i~~~~~~~~~dvHLMv- 67 (220)
T PRK08883 3 APSILSADFARLGEDVEKVL-AAGADVVHFDVMDNHYVPNL---TFG----------APICKALRDYGITAPIDVHLMV- 67 (220)
T ss_pred chhhhhcCHHHHHHHHHHHH-HcCCCEEEEecccCcccCcc---ccC----------HHHHHHHHHhCCCCCEEEEecc-
Confidence 45778888889999998887 6788875 55445433332 233 2567778776 57887774433
Q ss_pred CCCChhHHHHHHHHHHHcCCcEEEEeccc---------------------------------------------ccCccC
Q 009196 322 YFEGKNRIDSLIADIGTWGASAVTVHGRT---------------------------------------------RQQRYS 356 (540)
Q Consensus 322 ~~e~~~~~~~la~~leeaGvdaItVHgRt---------------------------------------------r~q~y~ 356 (540)
.+...+++.+.++|++.||+|.-+ ...++.
T Consensus 68 -----~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfg 142 (220)
T PRK08883 68 -----KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFG 142 (220)
T ss_pred -----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCC
Confidence 235678888999999999999632 011122
Q ss_pred CC----cCHHHHHHHHHHcCC---CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 357 KL----ADWDYIYQCARKASD---DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 357 g~----adw~~I~~i~~~~~~---~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
|. ..++.++++++.... ++||.+-|||+ .+.+.++.+ .|||++.+|++++..+.
T Consensus 143 Gq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~--aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 143 GQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAE--AGADMFVAGSAIFGQPD 203 (220)
T ss_pred CceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH--cCCCEEEEeHHHhCCCC
Confidence 21 124556666665421 38999999996 899988775 79999999999876444
No 170
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.69 E-value=0.0021 Score=62.67 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=105.1
Q ss_pred CCCCCHHHHHHHHHhCCCEEEeccceechhccCC-hhhhhhhhcccCC--CeEEEEecCCcHHHHHHHHHHHHHhCCCCE
Q 009196 195 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ-ASEWALLRRHSSE--DLFGVQICGAYPDTLARTVELIDQQCTVDF 271 (540)
Q Consensus 195 ~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~-~~e~~ll~~~~~e--~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~ 271 (540)
+|+++.---+.|.++|++++= ++....--+.- ......+...-.. .++++ +...+++.+.+.|. .+++|+
T Consensus 4 CGi~~~ed~~~a~~~Gvd~ig--~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v-~vn~~~~~i~~ia~----~~~~d~ 76 (203)
T cd00405 4 CGITTLEDALAAAEAGADAIG--FIFAPKSPRYVSPEQAREIVAALPPFVKRVGV-FVNEDLEEILEIAE----ELGLDV 76 (203)
T ss_pred CCCCCHHHHHHHHHcCCCEEE--EecCCCCCCCCCHHHHHHHHHhCCCCCcEEEE-EeCCCHHHHHHHHH----hcCCCE
Confidence 456666666677788988651 11111100101 1111112221122 33443 22344555555443 568999
Q ss_pred EEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc
Q 009196 272 IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR 351 (540)
Q Consensus 272 IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr 351 (540)
|-||..- .++ .++.+++..+.++...+.... . . ..+. ......|+|++.+...+.
T Consensus 77 Vqlhg~e----------------~~~----~~~~l~~~~~~~~i~~i~~~~--~-~-~~~~-~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 77 VQLHGDE----------------SPE----YCAQLRARLGLPVIKAIRVKD--E-E-DLEK-AAAYAGEVDAILLDSKSG 131 (203)
T ss_pred EEECCCC----------------CHH----HHHHHHhhcCCcEEEEEecCC--h-h-hHHH-hhhccccCCEEEEcCCCC
Confidence 9998321 122 344455444566654344421 1 1 1122 233457999998876654
Q ss_pred cCc--cCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCc
Q 009196 352 QQR--YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 414 (540)
Q Consensus 352 ~q~--y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwi 414 (540)
... ...+.+|+.+++++ . .+||++.||| +++.+.+++.. ..++||-|.+|+...|-.
T Consensus 132 ~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGGI-~~~Nv~~~i~~-~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 132 GGGGGTGKTFDWSLLRGLA--S--RKPVILAGGL-TPDNVAEAIRL-VRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCCCCCcceEChHHhhccc--c--CCCEEEECCC-ChHHHHHHHHh-cCCCEEEcCCcccCCCCC
Confidence 321 33457899998887 4 6999999999 99999998874 449999999999888765
No 171
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.00077 Score=66.09 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=85.7
Q ss_pred hCCCCEEEecCCCCCcccccCCccccccCCch-HHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEE
Q 009196 266 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPM-RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAV 344 (540)
Q Consensus 266 ~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~-~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaI 344 (540)
++|++.|-+.+-+ -.||. -+.++++..+. .+.-+..-+.. .+=+....++|+|.|
T Consensus 96 ~~Ga~IIA~DaT~--------------R~RP~~~~~~~i~~~k~-~~~l~MAD~St---------~ee~l~a~~~G~D~I 151 (229)
T COG3010 96 EAGADIIAFDATD--------------RPRPDGDLEELIARIKY-PGQLAMADCST---------FEEGLNAHKLGFDII 151 (229)
T ss_pred HCCCcEEEeeccc--------------CCCCcchHHHHHHHhhc-CCcEEEeccCC---------HHHHHHHHHcCCcEE
Confidence 5799988886432 24676 67788887432 34444443332 122345678899999
Q ss_pred --EEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 345 --TVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 345 --tVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
|++|-|....-....|+..++++.+ . .++||+-|.+.||+.+.++++ .||++|.|| +++.+|.
T Consensus 152 GTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~--~Ga~aVvVG-sAITRp~ 216 (229)
T COG3010 152 GTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIE--IGADAVVVG-SAITRPE 216 (229)
T ss_pred ecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHH--hCCeEEEEC-cccCCHH
Confidence 7787765333333468999999998 4 699999999999999999997 799999999 7778874
No 172
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.64 E-value=0.00023 Score=72.22 Aligned_cols=79 Identities=10% Similarity=-0.071 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
.++|+..++.|+.+|||-.= +..+++.|.++.+.+ ++||...|||++ +++.+++. .||+.|.||..++
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~--aGa~rVvIGS~av 108 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLD--EGASHVIVTSWLF 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHH--cCCCEEEECcHHH
Confidence 78999999999999998654 333999999999988 699999999997 99999887 7999999999999
Q ss_pred hC----CCchHHHHh
Q 009196 410 IK----PWIFTEIKE 420 (540)
Q Consensus 410 ~n----Pwif~eik~ 420 (540)
.+ |.++.++.+
T Consensus 109 ~~~~i~~~~~~~i~~ 123 (253)
T TIGR02129 109 TKGKFDLKRLKEIVS 123 (253)
T ss_pred hCCCCCHHHHHHHHH
Confidence 98 668888765
No 173
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.57 E-value=0.00047 Score=70.36 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=98.0
Q ss_pred CeEEEEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCc-----c-cccc--CCchHHHHHHHHhc-ccc
Q 009196 242 DLFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-----G-SCLL--TKPMRMKGIIEATS-GTV 310 (540)
Q Consensus 242 ~p~~vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~-----G-saLl--~~p~~l~eIv~av~-~~v 310 (540)
..++.=|... +.+.+.++++.+. +.|+|.||| |-|...-.-||- . -+|- -+.+.+.++++.++ +..
T Consensus 10 ~~li~yitaG~P~~~~~~~~~~~l~-~~GaD~iEi--GiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~ 86 (259)
T PF00290_consen 10 KALIPYITAGYPDLETTLEILKALE-EAGADIIEI--GIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEP 86 (259)
T ss_dssp TEEEEEEETTSSSHHHHHHHHHHHH-HTTBSSEEE--E--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEE--CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCC
Confidence 3455555555 4588999999887 789999999 666653333320 0 0111 14677888999999 667
Q ss_pred cccEEEEecCCCCCCh--hHHHHHHHHHHHcCCcEEEEec--------------------------cccc----------
Q 009196 311 DKPITIKVRTGYFEGK--NRIDSLIADIGTWGASAVTVHG--------------------------RTRQ---------- 352 (540)
Q Consensus 311 ~iPVtVKiR~G~~e~~--~~~~~la~~leeaGvdaItVHg--------------------------Rtr~---------- 352 (540)
++|+.+= ++.+.. .-..+|++.+.++|++++.|.. -|..
T Consensus 87 ~~pivlm---~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a 163 (259)
T PF00290_consen 87 DIPIVLM---TYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQA 163 (259)
T ss_dssp SSEEEEE---E-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-
T ss_pred CCCEEEE---eeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC
Confidence 8898762 221110 1234566667777777776532 0100
Q ss_pred ---------CccCCCc------CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 353 ---------QRYSKLA------DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 353 ---------q~y~g~a------dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
.+-+|.. --++++.+++.. ++||+.-=||.+++++.++. .+||||.||.+++
T Consensus 164 ~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~---~~aDGvIVGSa~v 230 (259)
T PF00290_consen 164 SGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA---AGADGVIVGSAFV 230 (259)
T ss_dssp SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH---TTSSEEEESHHHH
T ss_pred CcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH---ccCCEEEECHHHH
Confidence 0112221 146778888887 79999999999999999966 5899999999876
No 174
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.57 E-value=0.00076 Score=67.19 Aligned_cols=133 Identities=19% Similarity=0.295 Sum_probs=86.8
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
|++++ ++|+-.|--=---|.+. +...|-+=|.+|..+.+|+.++ .+||..|.|+|-. -=|+.|+..
T Consensus 33 A~IAE-~aGAvAVMaLervPaDi--R~aGGVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~-------~EA~iLeal 98 (296)
T COG0214 33 ARIAE-EAGAVAVMALERVPADI--RAAGGVARMADPKMIEEIMDAV----SIPVMAKVRIGHF-------VEAQILEAL 98 (296)
T ss_pred HHHHH-hcCceeEeehhhCcHHH--HhccCccccCCHHHHHHHHHhc----ccceeeeeecchh-------HHHHHHHHh
Confidence 44554 67765553222346553 3445678899999998888764 7999999999842 226778889
Q ss_pred CCcEEEE-----------e------------c------------------ccccCccCC---------------------
Q 009196 340 GASAVTV-----------H------------G------------------RTRQQRYSK--------------------- 357 (540)
Q Consensus 340 GvdaItV-----------H------------g------------------Rtr~q~y~g--------------------- 357 (540)
|+|+|.= | | ||+..--+|
T Consensus 99 gVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~ 178 (296)
T COG0214 99 GVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQS 178 (296)
T ss_pred CCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 9998831 1 0 111000000
Q ss_pred -------------CcCHHHHHHHHHHcCCCceE--EEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 358 -------------LADWDYIYQCARKASDDLQV--LGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 358 -------------~adw~~I~~i~~~~~~~IPV--IgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
.+-++.+.++++.- ++|| ++.|||-||.|+.-++. .|||||.+|.|.+.
T Consensus 179 ~~edel~~~Ak~~~~p~elv~~~~~~g--rLPVvnFAAGGvATPADAALMM~--LGadGVFVGSGIFK 242 (296)
T COG0214 179 MTEDELYVVAKELQAPYELVKEVAKLG--RLPVVNFAAGGVATPADAALMMQ--LGADGVFVGSGIFK 242 (296)
T ss_pred cCHHHHHHHHHHhCChHHHHHHHHHhC--CCCeEeecccCcCChhHHHHHHH--hCCCeEEecccccC
Confidence 01234444444432 5666 48999999999988776 79999999999875
No 175
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.49 E-value=0.00069 Score=68.46 Aligned_cols=87 Identities=10% Similarity=-0.043 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
+..+.++..++.|+..++|-.=.... ..+.+.+.|+++.+.+ .+||...|||+|.+++..++. .|||-|+||..
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~--~Ga~~vvigT~ 105 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALT--GGRARVNGGTA 105 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHH--cCCCEEEECch
Confidence 45678888899999999886432222 3456789999999988 699999999999999999887 79999999999
Q ss_pred HHhCCCchHHHHh
Q 009196 408 ALIKPWIFTEIKE 420 (540)
Q Consensus 408 aL~nPwif~eik~ 420 (540)
++.+|+++.++.+
T Consensus 106 a~~~p~~~~~~~~ 118 (243)
T TIGR01919 106 ALENPWWAAAVIR 118 (243)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999998864
No 176
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.49 E-value=0.00063 Score=68.30 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
+..++|+.+.+.|++.++|-.=.... ....+.+.|+++.+.. ..||-.-|||+|.+++.+++. .||+-|.||..
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~--~Ga~kvvigt~ 104 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLS--LDVNALVFSTI 104 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHH--CCCCEEEECch
Confidence 57899999999999999997654332 3446789999999854 259999999999999999887 79999999999
Q ss_pred HHhCCCchHHHHh
Q 009196 408 ALIKPWIFTEIKE 420 (540)
Q Consensus 408 aL~nPwif~eik~ 420 (540)
++.+|.+++++.+
T Consensus 105 a~~~p~~~~~~~~ 117 (232)
T PRK13586 105 VFTNFNLFHDIVR 117 (232)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999998754
No 177
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.47 E-value=0.00049 Score=69.50 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++|+.+.+.|++.++|-.=...- ...+.+++.|+++.+.+ +||...|||.|.+++.+++. .|||-|.||.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~-~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~--~Ga~rvvigT 103 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAI-ENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRK--LGYRRQIVSS 103 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcc-cCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHH--CCCCEEEECc
Confidence 367899999999999999987544211 12346889999999976 69999999999999999887 7999999999
Q ss_pred HHHhCCCchHHHHh
Q 009196 407 GALIKPWIFTEIKE 420 (540)
Q Consensus 407 gaL~nPwif~eik~ 420 (540)
.++.||.+++++.+
T Consensus 104 ~a~~~p~~l~~~~~ 117 (241)
T PRK14114 104 KVLEDPSFLKFLKE 117 (241)
T ss_pred hhhCCHHHHHHHHH
Confidence 99999999999853
No 178
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.46 E-value=0.0028 Score=62.92 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=87.6
Q ss_pred HHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 261 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 261 ~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
+.+. +.|+|.||+-+ + +|..+-.+.+.+.+-++++++.. ++|+-|=+-.+.- +.+.....++.+.++
T Consensus 77 ~~Av-~~GAdEiDvv~--n--------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L-~~~ei~~a~~ia~ea 144 (211)
T TIGR00126 77 KEAI-KYGADEVDMVI--N--------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLL-TDEEIRKACEICIDA 144 (211)
T ss_pred HHHH-HcCCCEEEeec--c--------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCC-CHHHHHHHHHHHHHh
Confidence 3444 46999999953 1 23333346677777777777766 5666554444542 235666788888999
Q ss_pred CCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 340 GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 340 GvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
|+|+|-.+.. ...+.+..+-+..+++.++.++||-+.|||.|++++.+++. .|++-+-..
T Consensus 145 GADfvKTsTG----f~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~--aGa~riGts 204 (211)
T TIGR00126 145 GADFVKTSTG----FGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIE--AGASRIGAS 204 (211)
T ss_pred CCCEEEeCCC----CCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH--HhhHHhCcc
Confidence 9999976421 11245777777777777765799999999999999999887 577755443
No 179
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.46 E-value=0.0008 Score=63.77 Aligned_cols=81 Identities=9% Similarity=-0.042 Sum_probs=61.8
Q ss_pred HHHHHHcCCcEEEEecccc---cCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 333 IADIGTWGASAVTVHGRTR---QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr---~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+..+.+.|+|+|.++.... .+.+..+..++.++++++.. ++||++-||| +.+++.+++. .|+|+|++|++++
T Consensus 108 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi-~~~~i~~~~~--~Ga~~i~~g~~i~ 182 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGI-TPENAAEVLA--AGADGVAVISAIT 182 (196)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHH--cCCCEEEEehHhh
Confidence 4556778999999875422 22332456789999998876 7999999999 5799988776 7999999999998
Q ss_pred hCCCchHHH
Q 009196 410 IKPWIFTEI 418 (540)
Q Consensus 410 ~nPwif~ei 418 (540)
..+.....+
T Consensus 183 ~~~~~~~~~ 191 (196)
T cd00564 183 GADDPAAAA 191 (196)
T ss_pred cCCCHHHHH
Confidence 776654444
No 180
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.45 E-value=0.0082 Score=57.93 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=96.3
Q ss_pred hhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc
Q 009196 232 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD 311 (540)
Q Consensus 232 ~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~ 311 (540)
.+.++.+..+.++.+-+.-.++... -++.+. ++|+|+|-+|.-. .++.+.++++.+++ .+
T Consensus 44 i~~i~~~~~~~~i~~~~~v~~~~~~--~~~~~~-~aGad~i~~h~~~----------------~~~~~~~~i~~~~~-~g 103 (202)
T cd04726 44 VRALREAFPDKIIVADLKTADAGAL--EAEMAF-KAGADIVTVLGAA----------------PLSTIKKAVKAAKK-YG 103 (202)
T ss_pred HHHHHHHCCCCEEEEEEEeccccHH--HHHHHH-hcCCCEEEEEeeC----------------CHHHHHHHHHHHHH-cC
Confidence 3334443346678777665665422 123344 6899999998421 12345567777765 35
Q ss_pred ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEe-cccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHH
Q 009196 312 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH-GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWN 390 (540)
Q Consensus 312 iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVH-gRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~ 390 (540)
+++.+=+ ++.. +..++.. +...|++.+.++ +++. +........+.++++++.. ++||+..||| +++.+.
T Consensus 104 ~~~~v~~-~~~~----t~~e~~~-~~~~~~d~v~~~~~~~~-~~~~~~~~~~~i~~~~~~~--~~~i~~~GGI-~~~~i~ 173 (202)
T cd04726 104 KEVQVDL-IGVE----DPEKRAK-LLKLGVDIVILHRGIDA-QAAGGWWPEDDLKKVKKLL--GVKVAVAGGI-TPDTLP 173 (202)
T ss_pred CeEEEEE-eCCC----CHHHHHH-HHHCCCCEEEEcCcccc-cccCCCCCHHHHHHHHhhc--CCCEEEECCc-CHHHHH
Confidence 5555421 1221 2234444 677899999985 3322 2221234567788887764 7999999999 599999
Q ss_pred HHHhcCCCcCeeeecHHHHhCCCchHH
Q 009196 391 KHKSDCPELASCMIARGALIKPWIFTE 417 (540)
Q Consensus 391 ~~l~~~~gaDgVMIGRgaL~nPwif~e 417 (540)
+++. .|||+|.+|+++...+..-..
T Consensus 174 ~~~~--~Gad~vvvGsai~~~~d~~~~ 198 (202)
T cd04726 174 EFKK--AGADIVIVGRAITGAADPAEA 198 (202)
T ss_pred HHHh--cCCCEEEEeehhcCCCCHHHH
Confidence 9886 799999999998766554333
No 181
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00066 Score=68.22 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
++..+.|+...+.|+..+++-.=...-- .++-+.++|+++.+.+ ++||=..|||+|.+++..++. .|++-|.+|.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~-g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~--~G~~rViiGt 105 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA-GGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLD--AGVARVIIGT 105 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecccccc-CCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHH--CCCCEEEEec
Confidence 4678999999999999999854322110 2445789999999999 799999999999999999887 7999999999
Q ss_pred HHHhCCCchHHHHhcC------------------CC-CCCHHHHHHHHHHHHHHHHHH
Q 009196 407 GALIKPWIFTEIKEQR------------------HW-DITSGERLNIMKDFARFGLEH 445 (540)
Q Consensus 407 gaL~nPwif~eik~~~------------------~~-~~s~~erl~il~~~~~~~le~ 445 (540)
.++.||.++.++.+.- -| ..|..+-.+++++|.++++.+
T Consensus 106 ~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ 163 (241)
T COG0106 106 AAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAH 163 (241)
T ss_pred ceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCe
Confidence 9999999999987531 14 334445667788887776554
No 182
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.44 E-value=0.02 Score=57.91 Aligned_cols=201 Identities=16% Similarity=0.064 Sum_probs=127.3
Q ss_pred CcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChh----hhhhh----h--cccCCCeEEEEec--CCcHH
Q 009196 187 EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS----EWALL----R--RHSSEDLFGVQIC--GAYPD 254 (540)
Q Consensus 187 nrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~----e~~ll----~--~~~~e~p~~vQL~--G~~p~ 254 (540)
+..+++| ++-|...-+++.+.|.+.+++--..+.... |.+. ++..+ + ......|+++-+- ..+++
T Consensus 8 ~~~i~~~--~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~-G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~ 84 (243)
T cd00377 8 GGPLVLP--GAWDALSARLAERAGFKAIYTSGAGVAASL-GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNAL 84 (243)
T ss_pred CCcEEec--CCCCHHHHHHHHHcCCCEEEeccHHHHHhc-CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHH
Confidence 3455555 888999999999999998876543332221 4332 11111 0 1122456665433 23668
Q ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccc--cEEEEecCCC----CCChhH
Q 009196 255 TLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK--PITIKVRTGY----FEGKNR 328 (540)
Q Consensus 255 ~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i--PVtVKiR~G~----~e~~~~ 328 (540)
.+.+.++.+. ++|+++|.|-=+..-+ .+ ...|..-+-.++...+.|++++++.+- ++.|=-|+.. ....++
T Consensus 85 ~~~~~v~~~~-~~G~~gv~iED~~~~k-~~-g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~e 161 (243)
T cd00377 85 NVARTVRELE-EAGAAGIHIEDQVGPK-KC-GHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDE 161 (243)
T ss_pred HHHHHHHHHH-HcCCEEEEEecCCCCc-cc-cCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHH
Confidence 8888888887 6899999996554321 11 112333344666667777777766532 4444446211 134578
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC--CC--CCHHHHHHHHhcCCCcCeeee
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG--DI--YSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG--dI--~s~eDa~~~l~~~~gaDgVMI 404 (540)
+++-++...++|+|.|-+++-. +.++++++.+.. ++||+.+- +- .+.++..+ -|+..|.+
T Consensus 162 ai~Ra~ay~~AGAD~v~v~~~~---------~~~~~~~~~~~~--~~Pl~~~~~~~~~~~~~~~l~~-----lG~~~v~~ 225 (243)
T cd00377 162 AIERAKAYAEAGADGIFVEGLK---------DPEEIRAFAEAP--DVPLNVNMTPGGNLLTVAELAE-----LGVRRVSY 225 (243)
T ss_pred HHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHhcC--CCCEEEEecCCCCCCCHHHHHH-----CCCeEEEE
Confidence 9999999999999999998643 678999999987 58887662 22 35555443 68999999
Q ss_pred cHHHH
Q 009196 405 ARGAL 409 (540)
Q Consensus 405 GRgaL 409 (540)
|-.++
T Consensus 226 ~~~~~ 230 (243)
T cd00377 226 GLALL 230 (243)
T ss_pred ChHHH
Confidence 86554
No 183
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.42 E-value=0.0037 Score=61.22 Aligned_cols=131 Identities=13% Similarity=0.012 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHH
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSL 332 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~l 332 (540)
+....-++.+. +.|+|.||+.+- +|..+-.+.+.+.+-+.++++.. +.|+-|=+-.+.. +.+.....
T Consensus 69 ~~k~~eve~A~-~~GAdevdvv~~----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l-~~~~i~~a 136 (203)
T cd00959 69 EVKVAEAREAI-ADGADEIDMVIN----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL-TDEEIIKA 136 (203)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeec----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC-CHHHHHHH
Confidence 44444455555 569999999531 23222335565666666666655 4555442333332 24567777
Q ss_pred HHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCee
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC 402 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgV 402 (540)
++.+.++|+|.|-.... ...+.+..+-+..+++.+..++||.+.|||.|++++.+++. .||+-+
T Consensus 137 ~ria~e~GaD~IKTsTG----~~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~--~g~~ri 200 (203)
T cd00959 137 CEIAIEAGADFIKTSTG----FGPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIE--AGATRI 200 (203)
T ss_pred HHHHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH--hChhhc
Confidence 88889999999976411 11244666666666666544699999999999999999887 577643
No 184
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.40 E-value=0.0013 Score=64.63 Aligned_cols=142 Identities=19% Similarity=0.244 Sum_probs=87.8
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
|++++ ++|+-.|-.----|.+. + ...|-+=|.+|..+.+|.+ ++.+||..|.|+|-. -=|+.|+..
T Consensus 34 A~iAE-~aGACaVmalervPadi-R-~~GgV~RMsDP~mIKei~~----aVsiPVMAk~RiGHF-------VEAQIlE~l 99 (296)
T KOG1606|consen 34 ARIAE-EAGACAVMALERVPADI-R-AQGGVARMSDPRMIKEIKN----AVSIPVMAKVRIGHF-------VEAQILEAL 99 (296)
T ss_pred HHHHH-hcCcceEeeeccCCHhH-H-hcCCeeecCCHHHHHHHHH----hccchhhhhhhhhhh-------hHHHHHHHh
Confidence 44444 66754443322345543 2 3346677889987666654 568999999999842 125667777
Q ss_pred CCcEEEE----------e-------------c-c--------ccc-------Ccc--CC---------------------
Q 009196 340 GASAVTV----------H-------------G-R--------TRQ-------QRY--SK--------------------- 357 (540)
Q Consensus 340 GvdaItV----------H-------------g-R--------tr~-------q~y--~g--------------------- 357 (540)
|+|+|.= | | | .++ ++- +|
T Consensus 100 ~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~ 179 (296)
T KOG1606|consen 100 GVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKN 179 (296)
T ss_pred ccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 8777731 0 0 0 000 000 00
Q ss_pred -------------CcCHHHHHHHHHHcCCCceEE--EeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 358 -------------LADWDYIYQCARKASDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 358 -------------~adw~~I~~i~~~~~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
.+-++.+.++++.- ++||+ +.|||.+|.|+.-+++ .|||||.+|.|.+..+.=+...+
T Consensus 180 m~~dev~t~Ak~i~aP~dLv~~t~q~G--rlPVV~FAaGGvaTPADAALmMQ--LGCdGVFVGSgiFks~dP~k~a~ 252 (296)
T KOG1606|consen 180 MDDDEVFTFAKEIAAPYDLVKQTKQLG--RLPVVNFAAGGVATPADAALMMQ--LGCDGVFVGSGIFKSGDPVKRAR 252 (296)
T ss_pred CCHHHHHHHHHHhcCcHHHHHHHHHcC--CCceEEecccCcCChhHHHHHHH--cCCCeEEeccccccCCCHHHHHH
Confidence 01233444444432 67875 8999999999988776 79999999999988777665543
No 185
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.40 E-value=0.00071 Score=67.74 Aligned_cols=87 Identities=9% Similarity=-0.050 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
+..++|+.+.+.|++.++|-.-.... ....+.+.++++.+.+ .+||...|||.+.+|+.+++. .||+-|.||..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~--~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~--~Ga~~viigt~ 109 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIM--GRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLK--RGASRVIVGTE 109 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCcccc--CCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHH--cCCCeEEEcce
Confidence 57899999999999999998766542 4567899999999988 699999999999999999887 79999999999
Q ss_pred HHhCCCchHHHHhc
Q 009196 408 ALIKPWIFTEIKEQ 421 (540)
Q Consensus 408 aL~nPwif~eik~~ 421 (540)
++.| .++.++.+.
T Consensus 110 ~~~~-~~~~~~~~~ 122 (233)
T cd04723 110 TLPS-DDDEDRLAA 122 (233)
T ss_pred eccc-hHHHHHHHh
Confidence 9999 888887653
No 186
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.39 E-value=0.0063 Score=58.91 Aligned_cols=145 Identities=13% Similarity=0.098 Sum_probs=88.6
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccCC--c--cccccCCchH---------------
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID-----IVVNKG--A--GSCLLTKPMR--------------- 298 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~-----~v~~~G--~--GsaLl~~p~~--------------- 298 (540)
++..=+-+.+++.+...++.+. +.|++.|++.+--|.. .+.+.. . |+...-+.+.
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~-~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALI-EGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 3444456677777777777776 5678888776543310 000000 0 2222222222
Q ss_pred --HHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCce
Q 009196 299 --MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ 376 (540)
Q Consensus 299 --l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IP 376 (540)
..++++..+. .+.++.+ |.. + ..+ +..+.++|+|.|-+... .+...++++.++..++ ++|
T Consensus 84 ~~~~~~~~~~~~-~~~~~i~----gv~-t---~~e-~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p 145 (190)
T cd00452 84 GLDPEVVKAANR-AGIPLLP----GVA-T---PTE-IMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVR 145 (190)
T ss_pred CCCHHHHHHHHH-cCCcEEC----CcC-C---HHH-HHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCe
Confidence 2234444333 2445444 433 2 223 34456799999998531 2224678888888776 599
Q ss_pred EEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 377 VLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 377 VIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+++.||| +++.+.+++. .|+++|.++..+.
T Consensus 146 ~~a~GGI-~~~n~~~~~~--~G~~~v~v~s~i~ 175 (190)
T cd00452 146 FMPTGGV-SLDNAAEWLA--AGVVAVGGGSLLP 175 (190)
T ss_pred EEEeCCC-CHHHHHHHHH--CCCEEEEEchhcc
Confidence 9999999 9999999887 6899999998876
No 187
>PRK08005 epimerase; Validated
Probab=97.39 E-value=0.0096 Score=59.07 Aligned_cols=151 Identities=11% Similarity=0.132 Sum_probs=100.4
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEE--EecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCC
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG 321 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~I--DIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G 321 (540)
+...|.+.++..+.+-.+.+. .+|+|.| ||==|.=+++. .+| -.+++++++.+++|+.|=+=.
T Consensus 3 i~pSil~ad~~~l~~el~~l~-~~g~d~lHiDvMDG~FVPN~---tfG----------~~~i~~l~~~t~~~~DvHLMv- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALH-DAPLGSLHLDIEDTSFINNI---TFG----------MKTIQAVAQQTRHPLSFHLMV- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHH-HCCCCEEEEeccCCCcCCcc---ccC----------HHHHHHHHhcCCCCeEEEecc-
Confidence 567889999999999999987 6788875 44334322221 223 356777877777887774432
Q ss_pred CCCChhHHHHHHHHHHHcCCcEEEEeccc-----------c----------------------------------cCccC
Q 009196 322 YFEGKNRIDSLIADIGTWGASAVTVHGRT-----------R----------------------------------QQRYS 356 (540)
Q Consensus 322 ~~e~~~~~~~la~~leeaGvdaItVHgRt-----------r----------------------------------~q~y~ 356 (540)
.+...+++.+.++|++.||+|.-+ + ..++.
T Consensus 68 -----~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~ 142 (210)
T PRK08005 68 -----SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGR 142 (210)
T ss_pred -----CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCc
Confidence 234568888999999999999642 0 11122
Q ss_pred CCc----CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHH
Q 009196 357 KLA----DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 357 g~a----dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~ei 418 (540)
|.. -++.|+++++..+ ...|-.-||| +.+.+.++.+ .|||.+.+|+++..++..-+.+
T Consensus 143 GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI-~~~~i~~l~~--aGad~~V~GsaiF~~~d~~~~~ 204 (210)
T PRK08005 143 GQQFIAAMCEKVSQSREHFP-AAECWADGGI-TLRAARLLAA--AGAQHLVIGRALFTTANYDVTL 204 (210)
T ss_pred cceecHHHHHHHHHHHHhcc-cCCEEEECCC-CHHHHHHHHH--CCCCEEEEChHhhCCCCHHHHH
Confidence 221 1344555555543 3468999999 5788888665 7999999999987666543333
No 188
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.35 E-value=0.0093 Score=58.89 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=92.8
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcc-----c-------ccCCccc---------------cccCC
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI-----V-------VNKGAGS---------------CLLTK 295 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~-----v-------~~~G~Gs---------------aLl~~ 295 (540)
+++.=|-+.+++.+.+.++.+. +.|+..||+-+--|... . ..-|.|+ ...--
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs 89 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT 89 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC
Confidence 3444467778888888888777 67888888854333210 0 0012222 22222
Q ss_pred chHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCc
Q 009196 296 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL 375 (540)
Q Consensus 296 p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~I 375 (540)
|..-.+++++.+. .+.++.+ |.. +..+ +....+.|+|+|.+.. .....+++++.++..++.++
T Consensus 90 p~~~~~v~~~~~~-~~~~~~~----G~~----t~~E-~~~A~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~~i 152 (206)
T PRK09140 90 PNTDPEVIRRAVA-LGMVVMP----GVA----TPTE-AFAALRAGAQALKLFP-------ASQLGPAGIKALRAVLPPDV 152 (206)
T ss_pred CCCCHHHHHHHHH-CCCcEEc----ccC----CHHH-HHHHHHcCCCEEEECC-------CCCCCHHHHHHHHhhcCCCC
Confidence 2222233333321 2334333 221 1223 3456678999999843 22345889999999884249
Q ss_pred eEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 376 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 376 PVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
||++.||| +.+.+.+++. .|+++|.++++++...+
T Consensus 153 pvvaiGGI-~~~n~~~~~~--aGa~~vav~s~l~~~~~ 187 (206)
T PRK09140 153 PVFAVGGV-TPENLAPYLA--AGAAGFGLGSALYRPGQ 187 (206)
T ss_pred eEEEECCC-CHHHHHHHHH--CCCeEEEEehHhccccc
Confidence 99999999 8899999887 79999999999976544
No 189
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.34 E-value=0.0044 Score=67.45 Aligned_cols=137 Identities=8% Similarity=0.057 Sum_probs=90.0
Q ss_pred EEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCC
Q 009196 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG 325 (540)
Q Consensus 246 vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~ 325 (540)
+.+++. |.... +.+. ++|+|+|=++...+ ...+.++++.+++ .+.++.+-+ ++.
T Consensus 64 ~kl~d~-g~~~v---~~a~-~aGAdgV~v~g~~~----------------~~~~~~~i~~a~~-~G~~~~~g~-~s~--- 117 (430)
T PRK07028 64 MKTMDT-GAIEV---EMAA-KAGADIVCILGLAD----------------DSTIEDAVRAARK-YGVRLMADL-INV--- 117 (430)
T ss_pred eeeccc-hHHHH---HHHH-HcCCCEEEEecCCC----------------hHHHHHHHHHHHH-cCCEEEEEe-cCC---
Confidence 455555 44433 3334 57999988762211 1123456666655 366666532 111
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+..+.++.+.+.|+++|.++.-...+.+ ++..++.++++++.+ ++||++-||| +.+.+.+++. .|||+|.+|
T Consensus 118 -~t~~e~~~~a~~~GaD~I~~~pg~~~~~~-~~~~~~~l~~l~~~~--~iPI~a~GGI-~~~n~~~~l~--aGAdgv~vG 190 (430)
T PRK07028 118 -PDPVKRAVELEELGVDYINVHVGIDQQML-GKDPLELLKEVSEEV--SIPIAVAGGL-DAETAAKAVA--AGADIVIVG 190 (430)
T ss_pred -CCHHHHHHHHHhcCCCEEEEEeccchhhc-CCChHHHHHHHHhhC--CCcEEEECCC-CHHHHHHHHH--cCCCEEEEC
Confidence 11234567778899999998753322222 234578899998877 6999999999 7888888776 799999999
Q ss_pred HHHHhCCCch
Q 009196 406 RGALIKPWIF 415 (540)
Q Consensus 406 RgaL~nPwif 415 (540)
|+++..+.+-
T Consensus 191 saI~~~~d~~ 200 (430)
T PRK07028 191 GNIIKSADVT 200 (430)
T ss_pred hHHcCCCCHH
Confidence 9999877653
No 190
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.34 E-value=0.0008 Score=68.66 Aligned_cols=84 Identities=5% Similarity=-0.138 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++|+.+++.|+.+|||-.=.. ..+.+++.|.++++ + ++||-..|||++ +++.+++. .||+-|+||.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~--~Ga~rViigT 112 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLD--AGASHVIVTS 112 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHH--cCCCEEEEch
Confidence 3578999999999999999865422 33567899999999 7 699999999996 99999887 7999999999
Q ss_pred HHHhC----CCchHHHHh
Q 009196 407 GALIK----PWIFTEIKE 420 (540)
Q Consensus 407 gaL~n----Pwif~eik~ 420 (540)
.|+.| |.++.++.+
T Consensus 113 ~Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 113 YVFRDGQIDLERLKDLVR 130 (262)
T ss_pred HHHhCCCCCHHHHHHHHH
Confidence 99999 999988865
No 191
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.34 E-value=0.0059 Score=61.73 Aligned_cols=158 Identities=12% Similarity=0.080 Sum_probs=104.2
Q ss_pred cEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhh----hhh-------hhcccCCCeEEEEe---cCCcH
Q 009196 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE----WAL-------LRRHSSEDLFGVQI---CGAYP 253 (540)
Q Consensus 188 rliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e----~~l-------l~~~~~e~p~~vQL---~G~~p 253 (540)
..+++| ++-|.+.-+++.+.|++.+++--.... ...|.+.. +.. +.+.....|+++=+ +|..+
T Consensus 12 ~~i~~~--~ayD~~sA~i~e~aG~dai~v~~s~~a-~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~ 88 (240)
T cd06556 12 ERFATL--TAYDYSMAKQFADAGLNVMLVGDSQGM-TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAP 88 (240)
T ss_pred CeEEEe--cCCCHHHHHHHHHcCCCEEEEChHHHH-HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCH
Confidence 344444 888999999999999998876543322 22343321 111 12222234666544 35577
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCC----------
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF---------- 323 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~---------- 323 (540)
+...+.++++. ++|+++|.|--+ ..+.+.+++++++ .+||.. |++..
T Consensus 89 ~~~~~~~~~l~-~aGa~gv~iED~-------------------~~~~~~i~ai~~a-~i~Via--Rtd~~pq~~~~~gg~ 145 (240)
T cd06556 89 TAAFELAKTFM-RAGAAGVKIEGG-------------------EWHIETLQMLTAA-AVPVIA--HTGLTPQSVNTSGGD 145 (240)
T ss_pred HHHHHHHHHHH-HcCCcEEEEcCc-------------------HHHHHHHHHHHHc-CCeEEE--EeCCchhhhhccCCc
Confidence 88889999888 599999999532 1234456666554 477776 44431
Q ss_pred -------CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCC
Q 009196 324 -------EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDI 383 (540)
Q Consensus 324 -------e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI 383 (540)
+..+++++-++.++++|+++|.+++. +.+.++++.+.+ ++|+++||-=
T Consensus 146 ~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~----------~~e~~~~i~~~~--~~P~~~~gag 200 (240)
T cd06556 146 EGQYRGDEAGEQLIADALAYAPAGADLIVMECV----------PVELAKQITEAL--AIPLAGIGAG 200 (240)
T ss_pred eeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhC--CCCEEEEecC
Confidence 12346777788899999999999642 568899999998 7999998743
No 192
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.33 E-value=0.0063 Score=61.78 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=92.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC----------
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---------- 320 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~---------- 320 (540)
.+|..++ +..+ ++|+++|=++. -...+|+++ +-++.++..+++||..|==+
T Consensus 61 ~d~~~~A---~~y~-~~GA~aISVlT-------e~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~ 121 (247)
T PRK13957 61 YHPVQIA---KTYE-TLGASAISVLT-------DQSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREAR 121 (247)
T ss_pred CCHHHHH---HHHH-HCCCcEEEEEc-------CCCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHH
Confidence 3555444 3444 67999996541 122355543 34555666668899887322
Q ss_pred --CCCC--------ChhHHHHHHHHHHHcCCcEE-EEeccc----------------ccCccCCCcCHHHHHHHHHHcCC
Q 009196 321 --GYFE--------GKNRIDSLIADIGTWGASAV-TVHGRT----------------RQQRYSKLADWDYIYQCARKASD 373 (540)
Q Consensus 321 --G~~e--------~~~~~~~la~~leeaGvdaI-tVHgRt----------------r~q~y~g~adw~~I~~i~~~~~~ 373 (540)
|.+- +.....++.....+.|.+.+ -||... .....+-..|.+...++...+|.
T Consensus 122 ~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~ 201 (247)
T PRK13957 122 AFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPP 201 (247)
T ss_pred HcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCC
Confidence 1110 12245555555555555554 344321 00112234567778888888887
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 374 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 374 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
++.+|.-+||.|++|+..+.. . +|+|.||.+++..+..-..+++
T Consensus 202 ~~~~IsESGI~t~~d~~~l~~--~-~davLvG~~lm~~~d~~~~~~~ 245 (247)
T PRK13957 202 NIVKVGESGIESRSDLDKFRK--L-VDAALIGTYFMEKKDIRKAWLS 245 (247)
T ss_pred CcEEEEcCCCCCHHHHHHHHH--h-CCEEEECHHHhCCCCHHHHHHH
Confidence 888999999999999999553 4 9999999999999987766653
No 193
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.33 E-value=0.021 Score=59.87 Aligned_cols=204 Identities=11% Similarity=0.032 Sum_probs=121.2
Q ss_pred CcccccCcccCCcEEEccCCCCCC-HHHHHHHHHhCCCEEEeccceechhc---cCChhhhhhhhcccCCCeEEEEecC-
Q 009196 176 HSREKKLIDFREKLYLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCTNLL---QGQASEWALLRRHSSEDLFGVQICG- 250 (540)
Q Consensus 176 ~p~e~~~l~lknrliLAPM~~vtd-lpfR~l~~~~Gadl~~TEmi~a~~l~---~g~~~e~~ll~~~~~e~p~~vQL~G- 250 (540)
.+..+.+..|..|+++-- ..|.+ .-.+.....-|++++.- ..+..- .+...-|.++.. ....+-..-+|
T Consensus 73 ~~~~i~~~~~~sRl~~Gt-g~y~s~~~~~~a~~asg~e~vTv---a~rr~~~~~~~~~~~~~~~~~--~~~~~lpNTag~ 146 (326)
T PRK11840 73 DSWTVAGKTFSSRLLVGT-GKYKDFEETAAAVEASGAEIVTV---AVRRVNVSDPGAPMLTDYIDP--KKYTYLPNTAGC 146 (326)
T ss_pred CCeEECCEEEecceeEec-CCCCCHHHHHHHHHHhCCCEEEE---EEEeecCcCCCcchHHHhhhh--cCCEECccCCCC
Confidence 467889999999998843 22333 34445555568887621 111111 122334444432 22222233333
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHh-cccccc-cEEEEecCCCCCChhH
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT-SGTVDK-PITIKVRTGYFEGKNR 328 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av-~~~v~i-PVtVKiR~G~~e~~~~ 328 (540)
.+.++..+.|+++.+-.|-++|-|-. ..+. -.|+.++..+.+-.+.+ ++-... |+.. ++
T Consensus 147 ~ta~eAv~~a~lare~~~~~~iKlEv-------i~e~--~~llpd~~~~v~aa~~L~~~Gf~v~~yc~-------~d--- 207 (326)
T PRK11840 147 YTAEEAVRTLRLAREAGGWDLVKLEV-------LGDA--KTLYPDMVETLKATEILVKEGFQVMVYCS-------DD--- 207 (326)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEE-------cCCC--CCcccCHHHHHHHHHHHHHCCCEEEEEeC-------CC---
Confidence 56889999999998555678876642 1111 12444444433333333 111122 3332 12
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
...++++++.|+.+|--- ...-+.-.+..+.++|..+.+.. ++|||.-+||.+++|+..+++ .|||||.+..|.
T Consensus 208 -~~~a~~l~~~g~~avmPl-~~pIGsg~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~Ame--lGadgVL~nSaI 281 (326)
T PRK11840 208 -PIAAKRLEDAGAVAVMPL-GAPIGSGLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAME--LGCDGVLMNTAI 281 (326)
T ss_pred -HHHHHHHHhcCCEEEeec-cccccCCCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHH--cCCCEEEEccee
Confidence 467899999999544321 11111112334778999999886 799999999999999999998 799999999988
Q ss_pred Hh
Q 009196 409 LI 410 (540)
Q Consensus 409 L~ 410 (540)
..
T Consensus 282 a~ 283 (326)
T PRK11840 282 AE 283 (326)
T ss_pred cc
Confidence 63
No 194
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.32 E-value=0.0033 Score=64.04 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 357 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 357 g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
-..|++...++...+|.++.+|.-+||.+++|+..+.. .|+|+|.||..++..|..-..+++
T Consensus 192 f~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~--~G~davLVGe~lm~~~d~~~~~~~ 253 (254)
T PF00218_consen 192 FEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLAR--AGADAVLVGEALMRSPDPGEALRE 253 (254)
T ss_dssp CCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCT--TT-SEEEESHHHHTSSSHHHHHHH
T ss_pred cccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHH--CCCCEEEECHHHhCCCCHHHHHhc
Confidence 34567777888888776799999999999999999654 799999999999999988777653
No 195
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.29 E-value=0.017 Score=59.15 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=98.8
Q ss_pred eEEEEecC--CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCC-----ccc-ccc--CCchHHHHHHHHhccc-cc
Q 009196 243 LFGVQICG--AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG-----AGS-CLL--TKPMRMKGIIEATSGT-VD 311 (540)
Q Consensus 243 p~~vQL~G--~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G-----~Gs-aLl--~~p~~l~eIv~av~~~-v~ 311 (540)
-++.=+.+ .+++...++++.+. +.|+|.||| |-|.+.-.-|| ++. +|- -.++...++++.+++. .+
T Consensus 18 a~i~yit~GdP~~e~s~e~i~~L~-~~GaD~iEL--GvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 18 ALIPYVTAGDPDLETSLEIIKTLV-EAGADILEL--GVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH-hCCCCEEEe--cCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 34443443 46789999999887 789999999 77764322222 111 111 2467888999999855 68
Q ss_pred ccEEEEecCCCCCC--hhHHHHHHHHHHHcCCcEEEE-------------------------ec-cc----------ccC
Q 009196 312 KPITIKVRTGYFEG--KNRIDSLIADIGTWGASAVTV-------------------------HG-RT----------RQQ 353 (540)
Q Consensus 312 iPVtVKiR~G~~e~--~~~~~~la~~leeaGvdaItV-------------------------Hg-Rt----------r~q 353 (540)
+|+.+=+ +... ..-...|++.+.++|++.+.| -. -| ..+
T Consensus 95 ~Pivlm~---Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~ 171 (265)
T COG0159 95 VPIVLMT---YYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAAS 171 (265)
T ss_pred CCEEEEE---eccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 8887632 1110 112344566666666666654 11 01 011
Q ss_pred c---------cCCCc-----C-HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 354 R---------YSKLA-----D-WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 354 ~---------y~g~a-----d-w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+ -+|.. . -+.++++++.. ++||+..=||.+++++.++.+ . ||||.||.++.
T Consensus 172 GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~--~-ADGVIVGSAiV 237 (265)
T COG0159 172 GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAE--A-ADGVIVGSAIV 237 (265)
T ss_pred CcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHH--h-CCeEEEcHHHH
Confidence 1 12211 1 35677888877 799999999999999999776 4 99999998865
No 196
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.26 E-value=0.0078 Score=66.89 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+..+.+..|.++|++.|.|..- ++.+. ..|+.|+++++..+ ++||++ |+|.|.+++..+++ .|||+|.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a---~G~s~-~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~--aGad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSS---QGNSI-YQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLID--AGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecC---CCCch-HHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHH--cCCCEEEEC
Confidence 4578899999999999998542 11111 23889999999886 688887 99999999999776 799999865
No 197
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.26 E-value=0.014 Score=63.00 Aligned_cols=152 Identities=11% Similarity=0.105 Sum_probs=101.8
Q ss_pred hhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc
Q 009196 232 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD 311 (540)
Q Consensus 232 ~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~ 311 (540)
.+.++..-.+.++.+-|.-.++..+. ++.+. ++|+|.|-+|+..+ ...+.+.++++++. +
T Consensus 217 Vk~Lr~~~~~~~I~~DLK~~Di~~~v--v~~~a-~aGAD~vTVH~ea~----------------~~ti~~ai~~akk~-G 276 (391)
T PRK13307 217 ISKIREVRPDAFIVADLKTLDTGNLE--ARMAA-DATADAVVISGLAP----------------ISTIEKAIHEAQKT-G 276 (391)
T ss_pred HHHHHHhCCCCeEEEEecccChhhHH--HHHHH-hcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-C
Confidence 33344433456789999999998775 54555 68999999995322 23455666666654 4
Q ss_pred ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 009196 312 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 391 (540)
Q Consensus 312 iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 391 (540)
+-+.|-+ ++. .+..+.++.+ ..++|.|.+|...-.+ ....-|+-++++++... +++|...|||. .+.+.+
T Consensus 277 ikvgVD~-lnp----~tp~e~i~~l-~~~vD~Vllht~vdp~--~~~~~~~kI~~ikk~~~-~~~I~VdGGI~-~eti~~ 346 (391)
T PRK13307 277 IYSILDM-LNV----EDPVKLLESL-KVKPDVVELHRGIDEE--GTEHAWGNIKEIKKAGG-KILVAVAGGVR-VENVEE 346 (391)
T ss_pred CEEEEEE-cCC----CCHHHHHHHh-hCCCCEEEEccccCCC--cccchHHHHHHHHHhCC-CCcEEEECCcC-HHHHHH
Confidence 3333311 111 1234556655 6799999999532222 12346888888888643 78999999996 889888
Q ss_pred HHhcCCCcCeeeecHHHHhCCCch
Q 009196 392 HKSDCPELASCMIARGALIKPWIF 415 (540)
Q Consensus 392 ~l~~~~gaDgVMIGRgaL~nPwif 415 (540)
++. .|||.+.+||++...+...
T Consensus 347 l~~--aGADivVVGsaIf~a~Dp~ 368 (391)
T PRK13307 347 ALK--AGADILVVGRAITKSKDVR 368 (391)
T ss_pred HHH--cCCCEEEEeHHHhCCCCHH
Confidence 775 7999999999987655543
No 198
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.0077 Score=59.92 Aligned_cols=154 Identities=14% Similarity=0.166 Sum_probs=106.4
Q ss_pred CeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEec--CCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec
Q 009196 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDIN--MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 319 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN--~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR 319 (540)
.++..+|.+.+...+.+-.+.+. ++|+|.|-+- =|.=++|.+ .| -.++++++..++.|+.|=+=
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~-~agad~iH~DVMDghFVPNiT---fG----------p~~v~~l~~~t~~p~DvHLM 69 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALE-AAGADLIHIDVMDGHFVPNIT---FG----------PPVVKALRKITDLPLDVHLM 69 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHH-HcCCCEEEEeccCCCcCCCcc---cC----------HHHHHHHhhcCCCceEEEEe
Confidence 35778999999999999999887 7899986553 343222221 22 36788888888889988654
Q ss_pred CCCCCChhHHHHHHHHHHHcCCcEEEEeccc---------------------------------------------ccCc
Q 009196 320 TGYFEGKNRIDSLIADIGTWGASAVTVHGRT---------------------------------------------RQQR 354 (540)
Q Consensus 320 ~G~~e~~~~~~~la~~leeaGvdaItVHgRt---------------------------------------------r~q~ 354 (540)
. .+...+++.+.++|++.||+|.-. -..+
T Consensus 70 V------~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPG 143 (220)
T COG0036 70 V------ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPG 143 (220)
T ss_pred c------CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCC
Confidence 3 234678899999999999999521 0122
Q ss_pred cCCCc----CHHHHHHHHHHcCC--CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHH
Q 009196 355 YSKLA----DWDYIYQCARKASD--DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 355 y~g~a----dw~~I~~i~~~~~~--~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~ei 418 (540)
+.|.. -.+-|+++++.... ++-|-.-||| +.+.+..+.+ .|||.+..|+++..++|+-..+
T Consensus 144 fgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~--AGad~~VaGSalF~~~d~~~~i 210 (220)
T COG0036 144 FGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAA--AGADVFVAGSALFGADDYKATI 210 (220)
T ss_pred CcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHH--cCCCEEEEEEEEeCCccHHHHH
Confidence 33322 24445555554431 4567799999 7788888665 7999999999998888844444
No 199
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.23 E-value=0.002 Score=62.58 Aligned_cols=78 Identities=10% Similarity=-0.033 Sum_probs=58.9
Q ss_pred HHHHHHcCCcEEEEeccc---ccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 333 IADIGTWGASAVTVHGRT---RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 333 a~~leeaGvdaItVHgRt---r~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+....+.|+|+|.++.-. ..+.+.....|+.++++++..+ .+||++-||| +.+++.+++. .|+|+|.+|+++.
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~--~Ga~gv~~gs~i~ 192 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLE--AGADGVAVVSAIT 192 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHH--cCCCEEEEeHHhh
Confidence 345557899999986432 2223333335899999999873 4999999999 7899998776 7999999999987
Q ss_pred hCCCc
Q 009196 410 IKPWI 414 (540)
Q Consensus 410 ~nPwi 414 (540)
..+..
T Consensus 193 ~~~d~ 197 (212)
T PRK00043 193 GAEDP 197 (212)
T ss_pred cCCCH
Confidence 65543
No 200
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.22 E-value=0.0067 Score=62.68 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCcc--CCCcCHHHHHHHHHHcCCCceEEEeC--CCCCHHHHHHHHhcCCCcCeee
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRY--SKLADWDYIYQCARKASDDLQVLGNG--DIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y--~g~adw~~I~~i~~~~~~~IPVIgNG--dI~s~eDa~~~l~~~~gaDgVM 403 (540)
+..+..+.+++.|+|+|.+.-.+-...| ....+++.++++++.+ ++|+++-| || +.+++.+++. .|+++|-
T Consensus 154 ~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI-~~e~~~~~i~--~G~~kin 228 (281)
T PRK06806 154 STTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV--HIPLVLHGGSGI-SPEDFKKCIQ--HGIRKIN 228 (281)
T ss_pred CHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc--CCCEEEECCCCC-CHHHHHHHHH--cCCcEEE
Confidence 3444444456789999987333322233 2346899999999998 79999999 99 7788888776 7999999
Q ss_pred ecHHHHhCC
Q 009196 404 IARGALIKP 412 (540)
Q Consensus 404 IGRgaL~nP 412 (540)
|.+++..+|
T Consensus 229 v~T~i~~a~ 237 (281)
T PRK06806 229 VATATFNSV 237 (281)
T ss_pred EhHHHHHHH
Confidence 999998853
No 201
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=97.22 E-value=0.0081 Score=61.59 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=96.9
Q ss_pred cEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhh----hh-------hhhcccCCCeEEEEec-C---Cc
Q 009196 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE----WA-------LLRRHSSEDLFGVQIC-G---AY 252 (540)
Q Consensus 188 rliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e----~~-------ll~~~~~e~p~~vQL~-G---~~ 252 (540)
..++.| +.-|.++-+++.+.|+++++|.-..+.. ..|.+.+ +. .+.+...-.++++=+- | .+
T Consensus 15 ~~i~~~--tayD~~sArl~e~aG~d~i~vGds~~~~-~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~ 91 (264)
T PRK00311 15 EKIVML--TAYDYPFAKLFDEAGVDVILVGDSLGMV-VLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQAS 91 (264)
T ss_pred CCEEEE--eCCCHHHHHHHHHcCCCEEEECHHHHHH-HcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCC
Confidence 444545 7889999999999999999875222111 1233221 11 1122222224555552 3 35
Q ss_pred HHHHHH-HHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEE---------------E
Q 009196 253 PDTLAR-TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT---------------I 316 (540)
Q Consensus 253 p~~~a~-AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVt---------------V 316 (540)
+++..+ +.+.++ ++|+++|.|--| ..+.+.|++++++ ++||. .
T Consensus 92 ~~~av~~a~r~~~-~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~ 150 (264)
T PRK00311 92 PEQALRNAGRLMK-EAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGY 150 (264)
T ss_pred HHHHHHHHHHHHH-HhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCe
Confidence 666444 455554 689999999533 2455667776643 78874 2
Q ss_pred EecCCCCC-ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC
Q 009196 317 KVRTGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 381 (540)
Q Consensus 317 KiR~G~~e-~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG 381 (540)
|+ .|-.+ ....+++-++.++++||++|.+-+ ... +.+++|.+.+ ++|+||-|
T Consensus 151 ~i-~grt~~~a~~~i~ra~a~~eAGA~~i~lE~---------v~~-~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 151 KV-QGRDEEAAEKLLEDAKALEEAGAFALVLEC---------VPA-ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred ee-ecCCHHHHHHHHHHHHHHHHCCCCEEEEcC---------CCH-HHHHHHHHhC--CCCEEEec
Confidence 33 22111 134677888889999999999843 122 6789999998 79999876
No 202
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.20 E-value=0.002 Score=64.22 Aligned_cols=87 Identities=9% Similarity=-0.010 Sum_probs=70.2
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 324 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 324 e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
.+.+.+...|...+..|...|-+- .+. . ..+.+.++++++.+. ++||+..|||+|++++.+++. .|||+|.
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe-~SG--~---~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~--aGAD~VV 202 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE-YSG--A---YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAE--AGADTIV 202 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC-CCC--C---cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHH--cCCCEEE
Confidence 355778888888999996666664 111 1 246789999999863 599999999999999999875 6999999
Q ss_pred ecHHHHhCCCchHHHH
Q 009196 404 IARGALIKPWIFTEIK 419 (540)
Q Consensus 404 IGRgaL~nPwif~eik 419 (540)
+|..+..+|.++.++.
T Consensus 203 VGsai~~~p~~~~~~v 218 (219)
T cd02812 203 VGNIVEEDPNAALETV 218 (219)
T ss_pred ECchhhCCHHHHHHHh
Confidence 9999999999888763
No 203
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.19 E-value=0.0013 Score=73.64 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEeccccc--CccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCH-----------HHHHHHH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQ--QRYSKLADWDYIYQCARKASDDLQVLGNGDIYSY-----------LDWNKHK 393 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~--q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~-----------eDa~~~l 393 (540)
-+..++|++..+.|+|.|++-.-+.. .......+++.|+++++.+ .+||...|||+|. +++.++|
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHH
Confidence 46789999999999999999766542 2222334589999999998 7999999999998 5588888
Q ss_pred hcCCCcCeeeecHHHHhCC------------CchHHHHh
Q 009196 394 SDCPELASCMIARGALIKP------------WIFTEIKE 420 (540)
Q Consensus 394 ~~~~gaDgVMIGRgaL~nP------------wif~eik~ 420 (540)
. .|||-|.||..|+.+| .+++++.+
T Consensus 345 ~--~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~ 381 (538)
T PLN02617 345 R--SGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISR 381 (538)
T ss_pred H--cCCCEEEEChHHHhChhhhhccccccCHHHHHHHHH
Confidence 6 7999999999999986 77776654
No 204
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.14 E-value=0.0019 Score=64.29 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++|+.+.+.|++.|+|-.=.... ..+.+.+.|+++.+. +||...|||+|.+|+.+++....+|+-|.||.
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--GLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--CCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 357889999999999999987654432 345688999999985 48999999999999998754223599999999
Q ss_pred HHHhCCCchHHHH
Q 009196 407 GALIKPWIFTEIK 419 (540)
Q Consensus 407 gaL~nPwif~eik 419 (540)
.++.||.++.++.
T Consensus 110 ~a~~~p~~l~~~~ 122 (221)
T TIGR00734 110 ETLDITELLRECY 122 (221)
T ss_pred hhhCCHHHHHHhh
Confidence 9999999998874
No 205
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.11 E-value=0.0043 Score=65.36 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=74.0
Q ss_pred chHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEeccc---ccCccCCC----cCHHHHHHHH
Q 009196 296 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRT---RQQRYSKL----ADWDYIYQCA 368 (540)
Q Consensus 296 p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRt---r~q~y~g~----adw~~I~~i~ 368 (540)
.+...+.++.+++.+++||.++++.. +.++..++++.++++|+|+|.+|--. ....+ +. .-|+.++.++
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~---~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~-g~~~~~~~~eil~~v~ 161 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS---SAGGWVDYARQIEQAGADALELNIYYLPTDPDIS-GAEVEQRYLDILRAVK 161 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC---CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCc-cccHHHHHHHHHHHHH
Confidence 45566677777777789999999752 45677899999999999999996421 11111 21 1357788888
Q ss_pred HHcCCCceEEEe--CCCCCHHHHHHHHhcCCCcCeeee
Q 009196 369 RKASDDLQVLGN--GDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 369 ~~~~~~IPVIgN--GdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
+.+ ++||++. +++.+..++.+.+++ .|||+|.+
T Consensus 162 ~~~--~iPV~vKl~p~~~~~~~~a~~l~~-~G~dgI~~ 196 (334)
T PRK07565 162 SAV--SIPVAVKLSPYFSNLANMAKRLDA-AGADGLVL 196 (334)
T ss_pred hcc--CCcEEEEeCCCchhHHHHHHHHHH-cCCCeEEE
Confidence 887 6999976 566567777777877 89999855
No 206
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.052 Score=54.43 Aligned_cols=206 Identities=14% Similarity=0.110 Sum_probs=122.0
Q ss_pred cccccCcccCCcEEEccCCCCCCH-HHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEec-CCcHH
Q 009196 177 SREKKLIDFREKLYLAPLTTVGNL-PFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC-GAYPD 254 (540)
Q Consensus 177 p~e~~~l~lknrliLAPM~~vtdl-pfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~-G~~p~ 254 (540)
+.++.+.+|..|+++-- ..+.+. -.....+.-|+.++.--+=-+...-.++..-|.++. +.+-.+-..-+ +.+.+
T Consensus 7 ~l~i~g~~f~SRLllGT-gky~s~~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~--~~~~~~LPNTaGc~tae 83 (262)
T COG2022 7 MLTIAGKTFDSRLLLGT-GKYPSPAVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLI--PLGVTLLPNTAGCRTAE 83 (262)
T ss_pred ceeecCeeeeeeEEEec-CCCCCHHHHHHHHHhcCCceEEEEEEeecccCCCcchHHHHhh--hcCcEeCCCccccCCHH
Confidence 35778889999998842 233333 334444556888764222222111122333344332 11211111112 35789
Q ss_pred HHHHHHHHHHHhCCCCEEEecC-CCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHH
Q 009196 255 TLARTVELIDQQCTVDFIDINM-GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLI 333 (540)
Q Consensus 255 ~~a~AA~~~~~~aG~D~IDIN~-GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la 333 (540)
+.++.|+++.+-.+-|+|-|-. |++- .|+-|+-. .+++...-++--++|=-=++ ++ .-++
T Consensus 84 EAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~e---tl~Aae~Lv~eGF~VlPY~~--dD----~v~a 144 (262)
T COG2022 84 EAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIE---TLKAAEQLVKEGFVVLPYTT--DD----PVLA 144 (262)
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHH---HHHHHHHHHhCCCEEeeccC--CC----HHHH
Confidence 9999999998556778876652 3332 24444433 33443333322333311111 11 3579
Q ss_pred HHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 334 ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 334 ~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
++|++.|+.+|-=-+- .-+.-.|..+-..+.-+.+.+ ++|||..-||-++.|+...++ -|||+|++-.+.-
T Consensus 145 rrLee~GcaavMPl~a-PIGSg~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aME--lG~DaVL~NTAiA 215 (262)
T COG2022 145 RRLEEAGCAAVMPLGA-PIGSGLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAME--LGADAVLLNTAIA 215 (262)
T ss_pred HHHHhcCceEeccccc-cccCCcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHh--cccceeehhhHhh
Confidence 9999999999853221 111123555667788889988 799999999999999999887 7999999987654
No 207
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.04 E-value=0.005 Score=62.21 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=93.8
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
|++++ .+|||.|=+-..+-. . ..|+-...+-..+.+...++.|...+.+||++-+..|+. +...+.+.++++.++
T Consensus 22 A~~~e-~~G~~ai~~s~~~~~-~--s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g-~~~~~~~~v~~~~~~ 96 (243)
T cd00377 22 ARLAE-RAGFKAIYTSGAGVA-A--SLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYG-NALNVARTVRELEEA 96 (243)
T ss_pred HHHHH-HcCCCEEEeccHHHH-H--hcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCC-CHHHHHHHHHHHHHc
Confidence 34444 679999977422111 1 113333334456778888888988889999999999975 446788889999999
Q ss_pred CCcEEEEecccccCc--------cCCCc-CHHHHHHHHHHcCC--CceEEEeCCC-----CCHHHHHHHH---hcCCCcC
Q 009196 340 GASAVTVHGRTRQQR--------YSKLA-DWDYIYQCARKASD--DLQVLGNGDI-----YSYLDWNKHK---SDCPELA 400 (540)
Q Consensus 340 GvdaItVHgRtr~q~--------y~g~a-dw~~I~~i~~~~~~--~IPVIgNGdI-----~s~eDa~~~l---~~~~gaD 400 (540)
|+++|.|-+.+...+ .-... ..+.|+.+++.... +++|++-=|. .+.+++.+.. .+ .|||
T Consensus 97 G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~-AGAD 175 (243)
T cd00377 97 GAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAE-AGAD 175 (243)
T ss_pred CCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHH-cCCC
Confidence 999999944332111 11111 12344445554432 6888887443 3445554322 23 7999
Q ss_pred eeeecHHHHhCCCchHHHHh
Q 009196 401 SCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 401 gVMIGRgaL~nPwif~eik~ 420 (540)
+|++= +. .++.-+.++.+
T Consensus 176 ~v~v~-~~-~~~~~~~~~~~ 193 (243)
T cd00377 176 GIFVE-GL-KDPEEIRAFAE 193 (243)
T ss_pred EEEeC-CC-CCHHHHHHHHh
Confidence 99985 22 25555555544
No 208
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.01 E-value=0.033 Score=55.78 Aligned_cols=147 Identities=14% Similarity=0.217 Sum_probs=98.8
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEE--EecCCCCCcccccCCccccccCCchHHHHHHHHhccc-ccccEEEEecC
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT-VDKPITIKVRT 320 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~I--DIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~-v~iPVtVKiR~ 320 (540)
+...|.+.+...+.+-.+.+. .+|+|.| ||==|+=+++. .+| -++++++++. +++|+.|=+=.
T Consensus 6 i~pSil~ad~~~l~~~i~~l~-~~g~d~lHiDimDG~FVPN~---tfg----------~~~i~~lr~~~~~~~~dvHLMv 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVL-KAGADWVHFDVMDNHYVPNL---TIG----------PMVCQALRKHGITAPIDVHLMV 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHH-HcCCCEEEEecccCccCCCc---ccC----------HHHHHHHHhhCCCCCEEEEecc
Confidence 678899999999999999997 6788875 55435433332 223 2578888877 58888775433
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEeccc-----------c----------------------------------cCcc
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHGRT-----------R----------------------------------QQRY 355 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHgRt-----------r----------------------------------~q~y 355 (540)
.+...+++.+.++|++.|++|.-. + ..++
T Consensus 72 ------~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf 145 (223)
T PRK08745 72 ------EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGF 145 (223)
T ss_pred ------CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCC
Confidence 234567888899999999999642 0 1112
Q ss_pred CCCc----CHHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 356 SKLA----DWDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 356 ~g~a----dw~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
.|.. -++-|+++++..+ .++.|-.-||| +.+.+..+.+ .|||.+.+|+++...+.
T Consensus 146 ~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~--aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 146 GGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAA--AGADTFVAGSAIFNAPD 207 (223)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHH--cCCCEEEEChhhhCCCC
Confidence 2221 1334445444321 14678999999 6888888665 79999999999765554
No 209
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=96.97 E-value=0.0049 Score=59.37 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=57.3
Q ss_pred HHHHcCCcEEEEecc----cccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 335 DIGTWGASAVTVHGR----TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 335 ~leeaGvdaItVHgR----tr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
.+.+.|+|+|.+... +.. .+..+..|+.+.++++..+ ++||++-||| +.+++.+++. .|+|+|++|++++.
T Consensus 111 ~a~~~g~dyi~~~~v~~t~~k~-~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~--~G~~gva~~~~i~~ 185 (196)
T TIGR00693 111 EAEAEGADYIGFGPIFPTPTKK-DPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLA--AGADGVAVVSAIMQ 185 (196)
T ss_pred HHhHcCCCEEEECCccCCCCCC-CCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHH--cCCCEEEEhHHhhC
Confidence 466789999986432 222 2333457899999988764 5999999999 6899998775 79999999999986
Q ss_pred CCCc
Q 009196 411 KPWI 414 (540)
Q Consensus 411 nPwi 414 (540)
....
T Consensus 186 ~~dp 189 (196)
T TIGR00693 186 AADP 189 (196)
T ss_pred CCCH
Confidence 5543
No 210
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.96 E-value=0.017 Score=59.02 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=85.5
Q ss_pred hCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecCCCCCChhHHHHHHHHHHHcCCcE
Q 009196 266 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGYFEGKNRIDSLIADIGTWGASA 343 (540)
Q Consensus 266 ~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~G~~e~~~~~~~la~~leeaGvda 343 (540)
+.|+|.||+=+ .+|..+..+.+.+.+-+++|++.++ .|+-|=+-++.-.+.+.....++.+.++|+|+
T Consensus 94 ~~GAdEiD~Vi----------nig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADF 163 (257)
T PRK05283 94 AYGADEVDVVF----------PYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADF 163 (257)
T ss_pred HcCCCEEeeec----------cHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCE
Confidence 46999999832 2344444578888888888887664 34444344554433334677888889999999
Q ss_pred EEEecccccCccCCCcCHHHHHHHHHHc-----CCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCch
Q 009196 344 VTVHGRTRQQRYSKLADWDYIYQCARKA-----SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 415 (540)
Q Consensus 344 ItVHgRtr~q~y~g~adw~~I~~i~~~~-----~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif 415 (540)
|--+ .+...+.+..+.+..+++.+ +.++-|=+.|||.|++++.+++.. |+-.|++-|+=
T Consensus 164 VKTS----TGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a---------g~~~lg~~~~~ 227 (257)
T PRK05283 164 IKTS----TGKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL---------ADEILGADWAD 227 (257)
T ss_pred EEcC----CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH---------HHHHhChhhcC
Confidence 9543 22223457777777776664 236889999999999999998863 55556555543
No 211
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.96 E-value=0.02 Score=60.95 Aligned_cols=125 Identities=14% Similarity=-0.019 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
+++.+.+.|+.+. +.||+.|-|..| .+ ..++...+.++++|+++ ++++.|-.--+| +..++
T Consensus 143 ~~~~~~~~a~~~~-~~Gf~~~Kik~~----------~~----~~~~~di~~i~~vR~~~G~~~~l~vDan~~~--~~~~A 205 (368)
T cd03329 143 SPEAYADFAEECK-ALGYRAIKLHPW----------GP----GVVRRDLKACLAVREAVGPDMRLMHDGAHWY--SRADA 205 (368)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEecC----------Cc----hhHHHHHHHHHHHHHHhCCCCeEEEECCCCc--CHHHH
Confidence 7888888888776 579999999421 01 12466778999999987 467777776677 35789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCC-HHHHHHHHhcCCCcCeeee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS-YLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s-~eDa~~~l~~~~gaDgVMI 404 (540)
.++++.+++.++.++ +|.. .+.+++..+++++.+ ++||.+...+.+ ++++.+++.. ..+|.|++
T Consensus 206 ~~~~~~l~~~~l~~i-------EeP~-~~~d~~~~~~l~~~~--~ipIa~~E~~~~~~~~~~~~i~~-~a~d~v~~ 270 (368)
T cd03329 206 LRLGRALEELGFFWY-------EDPL-REASISSYRWLAEKL--DIPILGTEHSRGALESRADWVLA-GATDFLRA 270 (368)
T ss_pred HHHHHHhhhcCCCeE-------eCCC-CchhHHHHHHHHhcC--CCCEEccCcccCcHHHHHHHHHh-CCCCEEec
Confidence 999999999887766 3332 234678888999987 799998888999 9999998886 77888876
No 212
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.94 E-value=0.02 Score=56.87 Aligned_cols=145 Identities=9% Similarity=0.065 Sum_probs=93.5
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc---C----CccccccCCchHHHH---------
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID-----IVVN---K----GAGSCLLTKPMRMKG--------- 301 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~-----~v~~---~----G~GsaLl~~p~~l~e--------- 301 (540)
+++.=|.+.++++....++.+. +.|+..|||-+--|.. .+++ + -.|+.-.-+++.+.+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 4555577889999999999887 6799999997765531 1110 0 012222233443333
Q ss_pred --------HHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCC
Q 009196 302 --------IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD 373 (540)
Q Consensus 302 --------Iv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~ 373 (540)
+++..++ .++|+.- |.. +..++. .+.++|+|.|-++... ....++++.++..++
T Consensus 93 vsP~~~~~v~~~~~~-~~i~~iP----G~~----T~~E~~-~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~p- 154 (213)
T PRK06552 93 VSPSFNRETAKICNL-YQIPYLP----GCM----TVTEIV-TALEAGSEIVKLFPGS-------TLGPSFIKAIKGPLP- 154 (213)
T ss_pred ECCCCCHHHHHHHHH-cCCCEEC----CcC----CHHHHH-HHHHcCCCEEEECCcc-------cCCHHHHHHHhhhCC-
Confidence 3333322 1333332 221 122333 3457999999986521 223578999999886
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 374 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 374 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
.+|++..||| +.+.+.+++. .|+++|.+|..++
T Consensus 155 ~ip~~atGGI-~~~N~~~~l~--aGa~~vavgs~l~ 187 (213)
T PRK06552 155 QVNVMVTGGV-NLDNVKDWFA--AGADAVGIGGELN 187 (213)
T ss_pred CCEEEEECCC-CHHHHHHHHH--CCCcEEEEchHHh
Confidence 6999999999 6899999887 7999999998885
No 213
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.92 E-value=0.022 Score=58.15 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=98.5
Q ss_pred cEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhh----hhhh----h--cccCCCe-EEEEec-C---Cc
Q 009196 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE----WALL----R--RHSSEDL-FGVQIC-G---AY 252 (540)
Q Consensus 188 rliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e----~~ll----~--~~~~e~p-~~vQL~-G---~~ 252 (540)
..++.| ++-|.++-+++.+.|+++++|.-..+.. ..|.+.+ +..+ + ......| +++=+- | ++
T Consensus 12 ~~l~~~--~ayD~~sA~l~e~aG~d~i~vGds~~~~-~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~ 88 (254)
T cd06557 12 EKIVML--TAYDYPTAKLADEAGVDVILVGDSLGMV-VLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTS 88 (254)
T ss_pred CcEEEE--eCCCHHHHHHHHHcCCCEEEECHHHHHH-HcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCC
Confidence 444445 7889999999999999999875222211 1233221 1111 1 1123446 444442 2 45
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC---------CC-
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---------GY- 322 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~---------G~- 322 (540)
+++..+.+.++.+++|+++|.|--| ..+.+.|++++++ ++||.-=+-+ |+
T Consensus 89 ~~~av~~a~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~ 148 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKLEGG-------------------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYK 148 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCce
Confidence 8887777666654699999999532 2555666666643 6776521111 11
Q ss_pred ----CC-ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCC
Q 009196 323 ----FE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD 382 (540)
Q Consensus 323 ----~e-~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGd 382 (540)
.+ ....+++-++.++++|+++|.+-+- . -+.+++|.+.+ ++|+||-|-
T Consensus 149 ~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v---------~-~~~~~~i~~~v--~iP~igiGa 201 (254)
T cd06557 149 VQGKTEEEAERLLEDALALEEAGAFALVLECV---------P-AELAKEITEAL--SIPTIGIGA 201 (254)
T ss_pred eccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC---------C-HHHHHHHHHhC--CCCEEEecc
Confidence 11 1246777888899999999998432 1 26789999999 799998773
No 214
>PRK06801 hypothetical protein; Provisional
Probab=96.92 E-value=0.046 Score=56.73 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCC--cCHHHHHHHHHHcCCCceEEEeCC--CCCHHHHHHHHhcCCCcCeeeec
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGD--IYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~--adw~~I~~i~~~~~~~IPVIgNGd--I~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+..+.+++.|+|+|.+.-.+..+.|.+. .+++.+.++++.+ ++|++.-|+ | +.+++.+++. .|++.|-|+
T Consensus 159 e~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi-~~e~~~~~i~--~Gi~KINv~ 233 (286)
T PRK06801 159 QLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGI-SDADFRRAIE--LGIHKINFY 233 (286)
T ss_pred HHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCC-CHHHHHHHHH--cCCcEEEeh
Confidence 33344445799999999767766777653 5899999999988 699999999 8 4677888776 799999999
Q ss_pred HHHHh
Q 009196 406 RGALI 410 (540)
Q Consensus 406 RgaL~ 410 (540)
+.+..
T Consensus 234 T~~~~ 238 (286)
T PRK06801 234 TGMSQ 238 (286)
T ss_pred hHHHH
Confidence 88754
No 215
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.90 E-value=0.02 Score=56.79 Aligned_cols=131 Identities=12% Similarity=0.023 Sum_probs=77.9
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
++.+. ++|+|+|=|.-. - +. ...+.+.+.++.+++ .++.+.+ -.+ +. +-++.+.+.
T Consensus 78 ~~~l~-~~G~~~vii~~s--e---r~--------~~~~e~~~~v~~a~~-~Gl~~I~--~v~---~~----~~~~~~~~~ 133 (223)
T PRK04302 78 PEAVK-DAGAVGTLINHS--E---RR--------LTLADIEAVVERAKK-LGLESVV--CVN---NP----ETSAAAAAL 133 (223)
T ss_pred HHHHH-HcCCCEEEEecc--c---cc--------cCHHHHHHHHHHHHH-CCCeEEE--EcC---CH----HHHHHHhcC
Confidence 55555 589999977422 0 00 012235556666555 3554334 221 11 234456778
Q ss_pred CCcEEEEecccccC------ccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 340 GASAVTVHGRTRQQ------RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 340 GvdaItVHgRtr~q------~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
|.+.|-+-+|...+ .+.....-+.++.+++... ++||++-|+|.+++++..++. .|+|||.||++++.-+.
T Consensus 134 ~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~-~~pvi~GggI~~~e~~~~~~~--~gadGvlVGsa~l~~~~ 210 (223)
T PRK04302 134 GPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNP-DVKVLCGAGISTGEDVKAALE--LGADGVLLASGVVKAKD 210 (223)
T ss_pred CCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccC-CCEEEEECCCCCHHHHHHHHc--CCCCEEEEehHHhCCcC
Confidence 88988876552111 1111111233445555443 699999999999999999775 79999999999986655
Q ss_pred chHH
Q 009196 414 IFTE 417 (540)
Q Consensus 414 if~e 417 (540)
+-.-
T Consensus 211 ~~~~ 214 (223)
T PRK04302 211 PEAA 214 (223)
T ss_pred HHHH
Confidence 4433
No 216
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.89 E-value=0.025 Score=58.51 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccC--CCcCHHHHHHHHHHcCCCceEEEeC--CCCCHHHHHHHHhcCCCcCeeee
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYS--KLADWDYIYQCARKASDDLQVLGNG--DIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~--g~adw~~I~~i~~~~~~~IPVIgNG--dI~s~eDa~~~l~~~~gaDgVMI 404 (540)
..+....+++.|+|+|.+.-.+..+.|+ +..+++.+++|++.+ ++|+++-| || +.+++.+++. .|++.|-|
T Consensus 155 ~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi-~~e~i~~~i~--~Gi~kiNv 229 (282)
T TIGR01859 155 PDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT--NIPLVLHGASGI-PEEQIKKAIK--LGIAKINI 229 (282)
T ss_pred HHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh--CCCEEEECCCCC-CHHHHHHHHH--cCCCEEEE
Confidence 3344444455899999975444333443 346799999999998 79999999 99 6778888776 79999999
Q ss_pred cHHHH
Q 009196 405 ARGAL 409 (540)
Q Consensus 405 GRgaL 409 (540)
++.+.
T Consensus 230 ~T~l~ 234 (282)
T TIGR01859 230 DTDCR 234 (282)
T ss_pred CcHHH
Confidence 98875
No 217
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.89 E-value=0.0023 Score=63.98 Aligned_cols=135 Identities=14% Similarity=0.027 Sum_probs=80.4
Q ss_pred HHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccc---ccccEEEEecCCCCC------ChhH
Q 009196 258 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT---VDKPITIKVRTGYFE------GKNR 328 (540)
Q Consensus 258 ~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~---v~iPVtVKiR~G~~e------~~~~ 328 (540)
..++.+. +.|+|+||+-+- +|...-.+.+.+.+.++.+++. .++||.+-.-+ ..+ ..+.
T Consensus 80 ~~ve~A~-~~GAd~vd~vi~----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 80 AEVEEAI-RLGADEVDVVIN----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHH-HTT-SEEEEEEE----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHH
T ss_pred HHHHHHH-HcCCceeeeecc----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHH
Confidence 3444444 569999998421 1111112234444444444333 37888876322 111 1123
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCce----EEEeCCC------CCHHHHHHHHhcCCC
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ----VLGNGDI------YSYLDWNKHKSDCPE 398 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IP----VIgNGdI------~s~eDa~~~l~~~~g 398 (540)
+...++.+.++|+|.|-..-.. . ......+...+.++.+.. ++| |.+.||| .+.+++.++++ .|
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~-~-~~~t~~~~~~~~~~~~~~--~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~--aG 221 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGK-P-VGATPEDVELMRKAVEAA--PVPGKVGVKASGGIDAEDFLRTLEDALEFIE--AG 221 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SS-S-SCSHHHHHHHHHHHHHTH--SSTTTSEEEEESSSSHHHHHHSHHHHHHHHH--TT
T ss_pred HHHHHHHHHHhCCCEEEecCCc-c-ccccHHHHHHHHHHHHhc--CCCcceEEEEeCCCChHHHHHHHHHHHHHHH--cC
Confidence 5677788899999999765331 1 111223445556666655 477 9999999 99999999887 79
Q ss_pred c--CeeeecHHHHh
Q 009196 399 L--ASCMIARGALI 410 (540)
Q Consensus 399 a--DgVMIGRgaL~ 410 (540)
| -|++.||.++.
T Consensus 222 a~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 222 ADRIGTSSGRNIWQ 235 (236)
T ss_dssp HSEEEEEEHHHHHT
T ss_pred ChhHHHHHHHHHHc
Confidence 9 89999998764
No 218
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.86 E-value=0.013 Score=58.21 Aligned_cols=139 Identities=15% Similarity=0.171 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHHHHHHhCCCCEEEe-cCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChh
Q 009196 250 GAYPDTLARTVELIDQQCTVDFIDI-NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKN 327 (540)
Q Consensus 250 G~~p~~~a~AA~~~~~~aG~D~IDI-N~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~ 327 (540)
+-+|+.|..|. .+|+|.||| |+-|= +.+|. .=..+.+.++.+..|+-+ ++|++|-+---. ..+
T Consensus 68 aVep~~f~~aV-----~AGAdliEIGNfDsF----Y~qGr----~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL--~ld 132 (242)
T PF04481_consen 68 AVEPELFVAAV-----KAGADLIEIGNFDSF----YAQGR----RFSAEEVLALTRETRSLLPDITLSVTVPHIL--PLD 132 (242)
T ss_pred cCCHHHHHHHH-----HhCCCEEEecchHHH----HhcCC----eecHHHHHHHHHHHHHhCCCCceEEecCccc--cHH
Confidence 45677777665 358888888 33332 22221 113567778888888877 788888654322 235
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCC---------cCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKL---------ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 398 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~---------adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 398 (540)
+-.++|..|++.|+|.|.--|.|......+. +-+.....|.+.+ ++||+..-|+.+..-=.. +. .|
T Consensus 133 ~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~vT~PmA-ia--aG 207 (242)
T PF04481_consen 133 QQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAVTAPMA-IA--AG 207 (242)
T ss_pred HHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchhhHHHH-HH--cC
Confidence 6678999999999999998887654433221 1244556677777 799999999977665444 44 79
Q ss_pred cCeeeecHHH
Q 009196 399 LASCMIARGA 408 (540)
Q Consensus 399 aDgVMIGRga 408 (540)
|.||-||.+.
T Consensus 208 AsGVGVGSav 217 (242)
T PF04481_consen 208 ASGVGVGSAV 217 (242)
T ss_pred CcccchhHHh
Confidence 9999999765
No 219
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=96.83 E-value=0.003 Score=63.57 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=58.7
Q ss_pred HcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCc-eEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC-ch
Q 009196 338 TWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL-QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW-IF 415 (540)
Q Consensus 338 eaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~I-PVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw-if 415 (540)
-.|-..+-+-..+ ++..+.+.++++++++.+ ++ ||+..|||++.+++.+++. .|||+|.||..+..||. .+
T Consensus 152 ~~g~~~vYle~gs---~~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~--~GAD~VVVGSai~~d~~~~~ 224 (232)
T PRK04169 152 YLGMPIVYLEYGG---GAGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMA--AGADTIVVGNIIEEDPKKTV 224 (232)
T ss_pred HcCCCeEEEECCC---CCCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHH--hCCCEEEEChHHhhCHHHHH
Confidence 3565655554332 334567899999999988 57 9999999999999999776 69999999999999988 44
Q ss_pred HHHH
Q 009196 416 TEIK 419 (540)
Q Consensus 416 ~eik 419 (540)
++++
T Consensus 225 ~~~~ 228 (232)
T PRK04169 225 KAIK 228 (232)
T ss_pred HHHH
Confidence 4443
No 220
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.83 E-value=0.022 Score=59.99 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=96.9
Q ss_pred CCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhh----hh-------hhcccCCCeEEE-Ee----cCCcHHHHH
Q 009196 194 LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEW----AL-------LRRHSSEDLFGV-QI----CGAYPDTLA 257 (540)
Q Consensus 194 M~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~----~l-------l~~~~~e~p~~v-QL----~G~~p~~~a 257 (540)
|.+.-|.++-+++.+.|+|++.+.-.... .+.|...+. .. +.+ ....+++| =| ++.++++..
T Consensus 39 mlTAyD~~sA~i~d~aGvD~ILVGDSlgm-v~lG~~~T~~Vtld~mi~H~~aV~R-ga~~a~vVaDmPfgSY~~s~e~av 116 (332)
T PLN02424 39 MVTAYDYPSAVHVDSAGIDVCLVGDSAAM-VVHGHDTTLPITLDEMLVHCRAVAR-GANRPLLVGDLPFGSYESSTDQAV 116 (332)
T ss_pred EEecCCHHHHHHHHHcCCCEEEECCcHHH-HhcCCCCCCCcCHHHHHHHHHHHhc-cCCCCEEEeCCCCCCCCCCHHHHH
Confidence 34778999999999999998754422111 123433321 11 122 22344443 22 345788887
Q ss_pred HHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC---------CCCC---C
Q 009196 258 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---------GYFE---G 325 (540)
Q Consensus 258 ~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~---------G~~e---~ 325 (540)
+.|.++..++|+++|.|-.|. ....++|+++. ..++||.-=|.+ |+.- +
T Consensus 117 ~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~ 177 (332)
T PLN02424 117 ESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRT 177 (332)
T ss_pred HHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCC
Confidence 777777447899999996432 22346666666 458888732221 2210 1
Q ss_pred ---hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC
Q 009196 326 ---KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 381 (540)
Q Consensus 326 ---~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG 381 (540)
...+++-|+.++++|+.+|.+-+-. -+.+++|.+.+ +||+||-|
T Consensus 178 ~~~a~~li~dA~ale~AGAf~ivLE~Vp----------~~la~~It~~l--~IPtIGIG 224 (332)
T PLN02424 178 AESAVKVVETALALQEAGCFAVVLECVP----------APVAAAITSAL--QIPTIGIG 224 (332)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEcCCc----------HHHHHHHHHhC--CCCEEeec
Confidence 2356778888999999999985421 24788999999 79999876
No 221
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.83 E-value=0.028 Score=58.52 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=58.4
Q ss_pred HHHHHHcCCcEEEEecccccCccC---CCcCHHHHHHHHHHcCCCceEEEeCC--CCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYS---KLADWDYIYQCARKASDDLQVLGNGD--IYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~---g~adw~~I~~i~~~~~~~IPVIgNGd--I~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
|..+.+.|+|+|.+.-.+..+.|. +..+|+.+++|++.++ ++|+++-|+ | +.+++.+++. .|++.|-|++.
T Consensus 159 a~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi-~~e~~~~~i~--~Gi~KiNv~T~ 234 (293)
T PRK07315 159 AKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGI-PDDQIQEAIK--LGVAKVNVNTE 234 (293)
T ss_pred HHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCC-CHHHHHHHHH--cCCCEEEEccH
Confidence 444447899999765444434442 3478999999999984 499999999 8 7788888776 79999999999
Q ss_pred HHhC
Q 009196 408 ALIK 411 (540)
Q Consensus 408 aL~n 411 (540)
+..+
T Consensus 235 i~~~ 238 (293)
T PRK07315 235 CQIA 238 (293)
T ss_pred HHHH
Confidence 9873
No 222
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.81 E-value=0.0037 Score=76.16 Aligned_cols=111 Identities=12% Similarity=0.154 Sum_probs=79.9
Q ss_pred CchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCc--------cCCCcCHHH-H
Q 009196 295 KPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--------YSKLADWDY-I 364 (540)
Q Consensus 295 ~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~--------y~g~adw~~-I 364 (540)
.++-+.++|..++... +.||+||+-.+.. +-.++.-+.++|+|.|+|.|.....+ +.| .-|++ +
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~-----vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~G-lP~e~gL 1052 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPG-----VGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAG-SPWELGL 1052 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCC-----ccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCC-ccHHHHH
Confidence 3566788888888887 6799999975421 12345556789999999998643221 222 23554 4
Q ss_pred HHHHHH-----cCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 365 YQCARK-----ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 365 ~~i~~~-----~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
.++.+. +.++|.|++.|++.|+.|+.+++. -|||.|.+||++|.-=-
T Consensus 1053 ~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~a--LGAd~~~~gt~~lialG 1104 (1485)
T PRK11750 1053 AETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAI--LGAESFGFGTGPMVALG 1104 (1485)
T ss_pred HHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHH--cCCcccccchHHHHHcC
Confidence 444443 234699999999999999999887 79999999999986533
No 223
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.79 E-value=0.031 Score=54.29 Aligned_cols=146 Identities=16% Similarity=0.108 Sum_probs=89.9
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCc-----------ccccCCccccccCCchHHHHHHHHhcc---
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID-----------IVVNKGAGSCLLTKPMRMKGIIEATSG--- 308 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~-----------~v~~~G~GsaLl~~p~~l~eIv~av~~--- 308 (540)
++..=|.+.++++....++.+. ..|++.|+|-+=-|.. .....|+|.-+.. +.+...+++=.+
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~--d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL--EDLEEAIAAGAQFCF 89 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH--HHHHHHHHcCCCEEE
Confidence 4444477778888888887776 5788888885433211 1122333332222 333322221111
Q ss_pred -------------cccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCc
Q 009196 309 -------------TVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL 375 (540)
Q Consensus 309 -------------~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~I 375 (540)
..+++. -+|. . +..+ +..+.+.|+|+|-++.- . .....++++.++..++ ++
T Consensus 90 ~p~~~~~~~~~~~~~~~~~----i~G~-~---t~~e-~~~A~~~Gadyv~~Fpt-~-----~~~G~~~l~~~~~~~~-~i 153 (187)
T PRK07455 90 TPHVDPELIEAAVAQDIPI----IPGA-L---TPTE-IVTAWQAGASCVKVFPV-Q-----AVGGADYIKSLQGPLG-HI 153 (187)
T ss_pred CCCCCHHHHHHHHHcCCCE----EcCc-C---CHHH-HHHHHHCCCCEEEECcC-C-----cccCHHHHHHHHhhCC-CC
Confidence 112222 2342 1 2233 34455689999998541 1 1224688999999886 69
Q ss_pred eEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 376 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 376 PVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
||++.||| +++++.++++ .|+++|.++++++.
T Consensus 154 pvvaiGGI-~~~n~~~~l~--aGa~~vav~s~i~~ 185 (187)
T PRK07455 154 PLIPTGGV-TLENAQAFIQ--AGAIAVGLSGQLFP 185 (187)
T ss_pred cEEEeCCC-CHHHHHHHHH--CCCeEEEEehhccc
Confidence 99999999 8899999887 79999999988753
No 224
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=96.77 E-value=0.065 Score=53.96 Aligned_cols=190 Identities=14% Similarity=0.112 Sum_probs=118.7
Q ss_pred CHHHHHHHH--HhCCCEEEeccceechhccCChhh-hhhh----h--cccCCCeEEEEecCCcHHHHHHHHHHHHHhCCC
Q 009196 199 NLPFRRVCK--VLGADVTCGEMAMCTNLLQGQASE-WALL----R--RHSSEDLFGVQICGAYPDTLARTVELIDQQCTV 269 (540)
Q Consensus 199 dlpfR~l~~--~~Gadl~~TEmi~a~~l~~g~~~e-~~ll----~--~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~ 269 (540)
|...|...+ +.|+|-++-|-....|+...-.++ .+.+ + ...-..|++|.+.-|++-.. ..++. ..|.
T Consensus 34 d~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA---~~IA~-a~gA 109 (263)
T COG0434 34 DRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAA---LAIAY-AVGA 109 (263)
T ss_pred HHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccHHH---HHHHH-hcCC
Confidence 344443333 368999988888777776532222 2211 1 12345799999988875433 23333 5689
Q ss_pred CEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccc--cEEEEecCCCCCChhHHHHHHHH-HHHcCCcEEEE
Q 009196 270 DFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK--PITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTV 346 (540)
Q Consensus 270 D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i--PVtVKiR~G~~e~~~~~~~la~~-leeaGvdaItV 346 (540)
|||-+|.-|-.-. ...| -+.-+...+.+....+...+.+ .+-||.-.-..+ ..+.+.++- ++..++|+|.+
T Consensus 110 ~FIRVN~~tg~~~-tdqG---iieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~--~~~~~~v~dtver~~aDaVI~ 183 (263)
T COG0434 110 DFIRVNVLTGAYA-TDQG---IIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGN--RSLEEAVKDTVERGLADAVIV 183 (263)
T ss_pred CEEEEEeeeceEe-cccc---eecchHHHHHHHHHhccCCcEEEeecchhcccccCC--cCHHHHHHHHHHccCCCEEEE
Confidence 9999996553311 1122 1233444444444555433221 345554433322 234444544 78889999999
Q ss_pred ecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 347 HGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 347 HgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
+|... ..++|.+.+..+++.+ ++||+.+-|+ +++.+.+++.- |||+.+|..+
T Consensus 184 tG~~T----G~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~---adG~IvgT~l 235 (263)
T COG0434 184 TGSRT----GSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI---ADGVIVGTSL 235 (263)
T ss_pred ecccC----CCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH---cCceEEEEEE
Confidence 98642 3568999999999998 6999999998 89999998863 9999999654
No 225
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.77 E-value=0.0088 Score=58.89 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=92.4
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhCCCCEE--EecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCC
Q 009196 244 FGVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG 321 (540)
Q Consensus 244 ~~vQL~G~~p~~~a~AA~~~~~~aG~D~I--DIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G 321 (540)
+...|...+...+.+..+.+. .+|+|.| ||-=|.=.++. +.| -++++++++.+++|+.|=+=.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~-~~g~d~lHiDiMDg~fvpn~---~~g----------~~~i~~i~~~~~~~~DvHLMv- 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLE-EAGADWLHIDIMDGHFVPNL---TFG----------PDIIKAIRKITDLPLDVHLMV- 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHH-HTT-SEEEEEEEBSSSSSSB----B-----------HHHHHHHHTTSSSEEEEEEES-
T ss_pred eehhhhhCCHHHHHHHHHHHH-HcCCCEEEEeecccccCCcc---cCC----------HHHHHHHhhcCCCcEEEEeee-
Confidence 567888889999999999997 6888864 66544333222 223 356777888788888886533
Q ss_pred CCCChhHHHHHHHHHHHcCCcEEEEecccc---------------------------------------------cCccC
Q 009196 322 YFEGKNRIDSLIADIGTWGASAVTVHGRTR---------------------------------------------QQRYS 356 (540)
Q Consensus 322 ~~e~~~~~~~la~~leeaGvdaItVHgRtr---------------------------------------------~q~y~ 356 (540)
. +...+++.+.++|++.|++|..+. ..++.
T Consensus 67 -~----~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~ 141 (201)
T PF00834_consen 67 -E----NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFG 141 (201)
T ss_dssp -S----SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTS
T ss_pred -c----cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCC
Confidence 1 234577888889999999986431 11233
Q ss_pred CCc----CHHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 357 KLA----DWDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 357 g~a----dw~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
|.. -++-|+++++..+ .++.|..-||| +.+.+..+.+ .|||.+.+|+++...
T Consensus 142 Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~--aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 142 GQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVE--AGADIFVAGSAIFKA 200 (201)
T ss_dssp SB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHH--HT--EEEESHHHHTS
T ss_pred cccccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHH--cCCCEEEECHHHhCC
Confidence 322 2445555554321 25899999999 6677878665 799999999987653
No 226
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=96.75 E-value=0.046 Score=56.01 Aligned_cols=152 Identities=14% Similarity=0.210 Sum_probs=93.3
Q ss_pred CCCCCHHHHHHHHHhCCCEEEeccceechhccCChhh----hh-------hhhcccCCCeEEE-----EecCCcHHHHHH
Q 009196 195 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE----WA-------LLRRHSSEDLFGV-----QICGAYPDTLAR 258 (540)
Q Consensus 195 ~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e----~~-------ll~~~~~e~p~~v-----QL~G~~p~~~a~ 258 (540)
.+.-|.++-+++.+.|+|++.+.-.... ...|...+ +. -+.+.. ..+++| .=++ ++++..+
T Consensus 20 ~tayD~~sA~i~~~aG~d~ilvGdSlgm-~~lG~~~t~~vtldem~~h~~aV~rg~-~~~~vv~DmPf~sy~-~~e~a~~ 96 (263)
T TIGR00222 20 ITAYDYSFAKLFADAGVDVILVGDSLGM-VVLGHDSTLPVTVADMIYHTAAVKRGA-PNCLIVTDLPFMSYA-TPEQALK 96 (263)
T ss_pred EeccCHHHHHHHHHcCCCEEEECccHhH-HhcCCCCCCCcCHHHHHHHHHHHHhhC-CCceEEeCCCcCCCC-CHHHHHH
Confidence 4778999999999999998876522211 12333222 11 112221 233332 1123 4777777
Q ss_pred HHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEE---------EEecCCCC------
Q 009196 259 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT---------IKVRTGYF------ 323 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVt---------VKiR~G~~------ 323 (540)
.|.++.+++|+++|.|--| ..+.+.++++.+ .++||. +..-.|+.
T Consensus 97 na~rl~~eaGa~aVkiEgg-------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~ 156 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG-------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDE 156 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCH
Confidence 7766654789999999632 223455555544 367766 43222232
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC
Q 009196 324 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 381 (540)
Q Consensus 324 e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG 381 (540)
+....+++-++.++++|+++|.+-+- . -+.+++|.+.+ +||+||-|
T Consensus 157 ~~a~~~i~~A~a~e~AGA~~ivlE~v---------p-~~~a~~It~~l--~iP~iGIG 202 (263)
T TIGR00222 157 EAAKKLLEDALALEEAGAQLLVLECV---------P-VELAAKITEAL--AIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCC---------c-HHHHHHHHHhC--CCCEEeec
Confidence 11236777788899999999998432 2 37889999999 79999876
No 227
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=96.71 E-value=0.023 Score=57.85 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=82.0
Q ss_pred HHHHHhcccccccEEEEec------------CCCCC--------ChhHHHHHHHHHHHcCCcEEE-Eecccc--------
Q 009196 301 GIIEATSGTVDKPITIKVR------------TGYFE--------GKNRIDSLIADIGTWGASAVT-VHGRTR-------- 351 (540)
Q Consensus 301 eIv~av~~~v~iPVtVKiR------------~G~~e--------~~~~~~~la~~leeaGvdaIt-VHgRtr-------- 351 (540)
+-++.++..+++||-+|== .|.+- +...+.+++....+.|.+.++ ||....
T Consensus 97 e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~g 176 (254)
T COG0134 97 EDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLG 176 (254)
T ss_pred HHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCC
Confidence 3456666777888888721 12211 223466677777777776653 554320
Q ss_pred --------cCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 352 --------QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 352 --------~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
...-+-..|.+...+++...|...-+|.-+||++++|+..+.. .|+|+|.||.++|..+.....+++
T Consensus 177 a~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~--~ga~a~LVG~slM~~~~~~~a~~~ 251 (254)
T COG0134 177 AKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAK--AGADAFLVGEALMRADDPEEALRE 251 (254)
T ss_pred CCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHH--cCCCEEEecHHHhcCCCHHHHHHH
Confidence 0111223577888899998887799999999999999999665 799999999999999998666543
No 228
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.023 Score=56.73 Aligned_cols=119 Identities=15% Similarity=0.060 Sum_probs=86.6
Q ss_pred hCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec--CCCCCChhHHHHHHHHHHHcCCcE
Q 009196 266 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR--TGYFEGKNRIDSLIADIGTWGASA 343 (540)
Q Consensus 266 ~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR--~G~~e~~~~~~~la~~leeaGvda 343 (540)
+.|+|.||+= . ..|..+-.+.+.+.+-|++|+++++-++.+|+- ++.-. .++.......+.++|+|+
T Consensus 88 ~~GAdEiDmV--------i--nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt-~ee~~~A~~i~~~aGAdF 156 (228)
T COG0274 88 ENGADEIDMV--------I--NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLT-DEEKRKACEIAIEAGADF 156 (228)
T ss_pred HcCCCeeeee--------e--eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccC-HHHHHHHHHHHHHhCCCE
Confidence 4699999982 1 124444468899999999999988644666654 44432 344567777789999999
Q ss_pred EEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCe
Q 009196 344 VTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 401 (540)
Q Consensus 344 ItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDg 401 (540)
|--+ .+...+.|-.+.+.-+++.+...+-|=++|||+|++|+..+++ .|+.-
T Consensus 157 VKTS----TGf~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~--aga~R 208 (228)
T COG0274 157 VKTS----TGFSAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIE--AGATR 208 (228)
T ss_pred EEcC----CCCCCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHH--HhHHH
Confidence 9543 2233556778888888888766799999999999999999987 45443
No 229
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.60 E-value=0.033 Score=56.81 Aligned_cols=133 Identities=21% Similarity=0.139 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. ..|+++|=+|. ..|-...-..+.-.++++.+++.+ .+||.+-+.. .+..++
T Consensus 16 D~~~~~~~i~~l~-~~Gv~gi~~~G----------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~---~~~~~~ 81 (281)
T cd00408 16 DLDALRRLVEFLI-EAGVDGLVVLG----------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA---NSTREA 81 (281)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC---ccHHHH
Confidence 5678888888877 56999998873 223223333444445566555554 5788886654 245679
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcCee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELASC 402 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaDgV 402 (540)
.++++.++++|+|+|.+..-.-.. .+...-++|+..|.+.+ ++||+ ..|--.+++.+.++.. .+.+-|+
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~-~~~~~~~~~~~~ia~~~--~~pi~iYn~P~~tg~~l~~~~~~~L~~-~~~v~gi 156 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNK-PSQEGIVAHFKAVADAS--DLPVILYNIPGRTGVDLSPETIARLAE-HPNIVGI 156 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCC-CCHHHHHHHHHHHHhcC--CCCEEEEECccccCCCCCHHHHHHHhc-CCCEEEE
Confidence 999999999999999996532111 11122367788888876 68887 3577778888888654 3555554
No 230
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.59 E-value=0.039 Score=58.47 Aligned_cols=134 Identities=7% Similarity=-0.096 Sum_probs=98.4
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecC
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT 320 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~ 320 (540)
|+-..+...+++.+.+.|+... +.||..+-|-.|- .+++.-.+.++++++++ ++.+.+-.--
T Consensus 132 ~~y~s~~~~~~~~~~~~a~~~~-~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 195 (355)
T cd03321 132 QAYDSHGLDGAKLATERAVTAA-EEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYNQ 195 (355)
T ss_pred eEEEeCCCChHHHHHHHHHHHH-HhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 4444444456777766666554 3489888875431 23555677899999887 3567666666
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
+|+ ..++.++++.+++.++.+|- |.. .+-+|+..+++++.+ ++||.+...+.++.++..++.. ..+|
T Consensus 196 ~~~--~~~A~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~--~ipia~~E~~~~~~~~~~~i~~-~~~d 262 (355)
T cd03321 196 SLT--VPEAIERGQALDQEGLTWIE-------EPT-LQHDYEGHARIASAL--RTPVQMGENWLGPEEMFKALSA-GACD 262 (355)
T ss_pred CcC--HHHHHHHHHHHHcCCCCEEE-------CCC-CCcCHHHHHHHHHhc--CCCEEEcCCCcCHHHHHHHHHh-CCCC
Confidence 674 56899999999999988874 322 345789999999988 7999998899999999998886 7788
Q ss_pred eeeec
Q 009196 401 SCMIA 405 (540)
Q Consensus 401 gVMIG 405 (540)
.|++-
T Consensus 263 ~i~~~ 267 (355)
T cd03321 263 LVMPD 267 (355)
T ss_pred eEecC
Confidence 88764
No 231
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=96.55 E-value=0.059 Score=62.21 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec------------
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR------------ 319 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR------------ 319 (540)
+|..+++ ... ..|+++|-+.. -.+-+|+++ +-++.+++.+++||-.|==
T Consensus 71 d~~~~a~---~y~-~~GA~aiSVlT-------e~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~ 131 (695)
T PRK13802 71 DPAALAR---EYE-QGGASAISVLT-------EGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARA 131 (695)
T ss_pred CHHHHHH---HHH-HcCCcEEEEec-------CcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHH
Confidence 5555444 333 57899998751 122344433 3344555566788877621
Q ss_pred CCCCC--------ChhHHHHHHHHHHHcCCcEE-EEecccc----------------cCccCCCcCHHHHHHHHHHcCCC
Q 009196 320 TGYFE--------GKNRIDSLIADIGTWGASAV-TVHGRTR----------------QQRYSKLADWDYIYQCARKASDD 374 (540)
Q Consensus 320 ~G~~e--------~~~~~~~la~~leeaGvdaI-tVHgRtr----------------~q~y~g~adw~~I~~i~~~~~~~ 374 (540)
.|-+- +...+.+|.....+.|.+.| -||.+.. ....+-..|.+...++...+|.+
T Consensus 132 ~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~ 211 (695)
T PRK13802 132 HGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDD 211 (695)
T ss_pred cCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCC
Confidence 12110 12356666677777777665 4664320 01122345778888888888878
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 375 LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 375 IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
+.+|.-+||.+++|+..+.. .|+|+|.||.+++..|..-..+++
T Consensus 212 ~~~VsESGI~~~~d~~~l~~--~G~davLIGeslm~~~dp~~~~~~ 255 (695)
T PRK13802 212 VIKVAESGVFGAVEVEDYAR--AGADAVLVGEGVATADDHELAVER 255 (695)
T ss_pred cEEEEcCCCCCHHHHHHHHH--CCCCEEEECHHhhCCCCHHHHHHH
Confidence 89999999999999999665 799999999999999987666654
No 232
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.52 E-value=0.14 Score=53.06 Aligned_cols=199 Identities=16% Similarity=0.080 Sum_probs=119.1
Q ss_pred cEEEccCCCCCCHHHHHHHHHh---------CCCEEEeccceechhccCChh----hhh-hh---h--cccCCCeEEEEe
Q 009196 188 KLYLAPLTTVGNLPFRRVCKVL---------GADVTCGEMAMCTNLLQGQAS----EWA-LL---R--RHSSEDLFGVQI 248 (540)
Q Consensus 188 rliLAPM~~vtdlpfR~l~~~~---------Gadl~~TEmi~a~~l~~g~~~----e~~-ll---~--~~~~e~p~~vQL 248 (540)
..+++| ++-|..--+++.+. |.+.++|--..... ..|.+. ++. ++ + ......|+++=+
T Consensus 9 ~~l~~p--~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~-s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~ 85 (285)
T TIGR02320 9 PLERLM--EAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDST-SRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDG 85 (285)
T ss_pred CCEEEe--cCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHH-HCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEec
Confidence 455556 77787777888888 98877764332221 223221 111 11 0 123345755433
Q ss_pred c-CCcHHHHHHHHHHHHHhCCCCEEEecCC-----CCCcccccCCccccccCCchHHHHHHHHhccc-c--cccEEEEec
Q 009196 249 C-GAYPDTLARTVELIDQQCTVDFIDINMG-----CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT-V--DKPITIKVR 319 (540)
Q Consensus 249 ~-G~~p~~~a~AA~~~~~~aG~D~IDIN~G-----CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~-v--~iPVtVKiR 319 (540)
= |.++..+.+.++.+. .+|+.+|.|-=. |.+ ..+.|...+-.++...+.|++++++ . +++|.+ |
T Consensus 86 d~Gg~~~~v~r~V~~l~-~aGvaGi~iEDq~~pk~cg~----~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiA--R 158 (285)
T TIGR02320 86 DTGGNFEHFRRLVRKLE-RRGVSAVCIEDKLGLKKNSL----FGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIA--R 158 (285)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCeEEEEeccCCCccccc----cCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEE--e
Confidence 2 368899999999988 689999999322 222 1122223344556666666776655 3 445555 5
Q ss_pred CC--C-CCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCC---CceEEEeC---CCCCHHHHH
Q 009196 320 TG--Y-FEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD---DLQVLGNG---DIYSYLDWN 390 (540)
Q Consensus 320 ~G--~-~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~---~IPVIgNG---dI~s~eDa~ 390 (540)
+. + ....+++++-+++..++|+|.|-+++. ..+.+.+.++.+.++. ++||+.+. +..+.++.
T Consensus 159 TDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~--------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL- 229 (285)
T TIGR02320 159 VESLILGKGMEDALKRAEAYAEAGADGIMIHSR--------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEF- 229 (285)
T ss_pred cccccccCCHHHHHHHHHHHHHcCCCEEEecCC--------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHH-
Confidence 31 1 124578889999999999999999831 2334556666555531 47888765 33454443
Q ss_pred HHHhcCCCcCeeeecHHHH
Q 009196 391 KHKSDCPELASCMIARGAL 409 (540)
Q Consensus 391 ~~l~~~~gaDgVMIGRgaL 409 (540)
.+ -|+..|..|-.++
T Consensus 230 ---~~-lG~~~v~~~~~~~ 244 (285)
T TIGR02320 230 ---RD-AGISVVIYANHLL 244 (285)
T ss_pred ---HH-cCCCEEEEhHHHH
Confidence 33 6899999985554
No 233
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.48 E-value=0.5 Score=49.13 Aligned_cols=203 Identities=16% Similarity=0.102 Sum_probs=125.1
Q ss_pred CCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChh----hhh-hh---h--cccCCCeEEEEecC--CcH
Q 009196 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS----EWA-LL---R--RHSSEDLFGVQICG--AYP 253 (540)
Q Consensus 186 knrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~----e~~-ll---~--~~~~e~p~~vQL~G--~~p 253 (540)
.+..+++| ++-|.---+++.+.|.+.++|--..... ..|.+. ++. ++ + ......|+++=+=. .++
T Consensus 11 ~~~~l~~p--~~~Da~SAri~e~aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~ 87 (285)
T TIGR02317 11 KEDILQIP--GAINAMAALLAERAGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEA 87 (285)
T ss_pred CCCcEEeC--CCCCHHHHHHHHHcCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCH
Confidence 34567777 7778777778888999877765433332 223221 111 11 1 12335677765532 348
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCC--CCChhHHH
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY--FEGKNRID 330 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~--~e~~~~~~ 330 (540)
..+.+.++.+. ++|+.+|.|-=... ++.+....|..|. .++...+-|++++++. +.++.|=-|+-. ....++++
T Consensus 88 ~~v~~tv~~~~-~aG~agi~IEDq~~-pK~cgh~~g~~lv-~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 164 (285)
T TIGR02317 88 FNVARTVREME-DAGAAAVHIEDQVL-PKRCGHLPGKELV-SREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAI 164 (285)
T ss_pred HHHHHHHHHHH-HcCCeEEEEecCCC-ccccCCCCCcccc-CHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHH
Confidence 99999999988 79999999964431 2222222233343 4444455555555544 455666667632 12356778
Q ss_pred HHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEe---CC---CCCHHHHHHHHhcCCCcCeeee
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN---GD---IYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgN---Gd---I~s~eDa~~~l~~~~gaDgVMI 404 (540)
+=++...++|+|.|-+++ +.+.+.+.++.+.+ ++|++.| |+ ..+.++..+ -|+..|.+
T Consensus 165 ~Ra~ay~~AGAD~vfi~g---------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~~p~~s~~eL~~-----lGv~~v~~ 228 (285)
T TIGR02317 165 ERAKAYVEAGADMIFPEA---------LTSLEEFRQFAKAV--KVPLLANMTEFGKTPLFTADELRE-----AGYKMVIY 228 (285)
T ss_pred HHHHHHHHcCCCEEEeCC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHH-----cCCcEEEE
Confidence 888888999999999986 23456788898888 4787433 33 345555433 68999999
Q ss_pred cHHHHh
Q 009196 405 ARGALI 410 (540)
Q Consensus 405 GRgaL~ 410 (540)
|-.++.
T Consensus 229 ~~~~~~ 234 (285)
T TIGR02317 229 PVTAFR 234 (285)
T ss_pred chHHHH
Confidence 965543
No 234
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.47 E-value=0.44 Score=49.67 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=125.2
Q ss_pred CCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceechhccCChh----hhh-h---hh--cccCCCeEEEEecC--CcH
Q 009196 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS----EWA-L---LR--RHSSEDLFGVQICG--AYP 253 (540)
Q Consensus 186 knrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~----e~~-l---l~--~~~~e~p~~vQL~G--~~p 253 (540)
.+..+++| ++-|..--+++.+.|.+.+++--........|.+. ++. + ++ ......|+++=+=+ .++
T Consensus 15 ~~~~l~~p--~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~ 92 (292)
T PRK11320 15 AEKPLQIV--GTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGA 92 (292)
T ss_pred CCCcEEec--CCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCH
Confidence 34566666 77787777888889998876654322211123221 111 1 11 12334677766542 289
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCC--CCChhHHH
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY--FEGKNRID 330 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~--~e~~~~~~ 330 (540)
..+.+.++.+. ++|+.+|.|-=... ++.+....|..|. .++.+.+=|++++++. +.++.|=-|+-. ....++++
T Consensus 93 ~~v~r~V~~~~-~aGaagi~IEDq~~-pK~cg~~~~~~lv-~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 169 (292)
T PRK11320 93 FNIARTVKSMI-KAGAAAVHIEDQVG-AKRCGHRPNKEIV-SQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAI 169 (292)
T ss_pred HHHHHHHHHHH-HcCCeEEEEecCCC-ccccCCCCCCccc-CHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHH
Confidence 99999999998 79999999954331 2222222233333 4555555555555543 566666667632 22356788
Q ss_pred HHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEE---eCC---CCCHHHHHHHHhcCCCcCeeee
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLG---NGD---IYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIg---NGd---I~s~eDa~~~l~~~~gaDgVMI 404 (540)
+=+++..++|+|.|-+++- .+.+.++++.+.+ ++|+++ +|+ ..+.++..+ -|+..|.+
T Consensus 170 ~Ra~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~-----lGv~~v~~ 233 (292)
T PRK11320 170 ERAQAYVEAGADMIFPEAM---------TELEMYRRFADAV--KVPILANITEFGATPLFTTEELAS-----AGVAMVLY 233 (292)
T ss_pred HHHHHHHHcCCCEEEecCC---------CCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHH-----cCCcEEEE
Confidence 8888899999999999862 3567888999888 578743 233 345555433 68999999
Q ss_pred cHHHH
Q 009196 405 ARGAL 409 (540)
Q Consensus 405 GRgaL 409 (540)
|-.++
T Consensus 234 ~~~~~ 238 (292)
T PRK11320 234 PLSAF 238 (292)
T ss_pred ChHHH
Confidence 96554
No 235
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=96.45 E-value=0.089 Score=52.81 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC------CCC------
Q 009196 256 LARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT------GYF------ 323 (540)
Q Consensus 256 ~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~------G~~------ 323 (540)
..+.++.+. ++|-|+|-| |++.--..+.+.++++++++..++|+..--.. +.+
T Consensus 30 ~~ei~~~~~-~~GTDaImI--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~s 94 (240)
T COG1646 30 ADEIAEAAA-EAGTDAIMI--------------GGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPS 94 (240)
T ss_pred cHHHHHHHH-HcCCCEEEE--------------CCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEE
Confidence 444555555 679999999 45555567889999999998889998875431 000
Q ss_pred ----CCh----hHHHHHHHHHHHcCCc-----EEEE--------ecccc-----------------------------cC
Q 009196 324 ----EGK----NRIDSLIADIGTWGAS-----AVTV--------HGRTR-----------------------------QQ 353 (540)
Q Consensus 324 ----e~~----~~~~~la~~leeaGvd-----aItV--------HgRtr-----------------------------~q 353 (540)
.+. ..-..-++.+...+.. +|.+ ++..+ ..
T Consensus 95 vLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEags 174 (240)
T COG1646 95 VLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGS 174 (240)
T ss_pred EecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 000 0111222333333211 1111 11111 11
Q ss_pred ccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 354 RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 354 ~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
+|..|..-+.++++++ ..|+|..|||+|+|.+.++.. .|||.|.+|.-+..+|.-+.++-
T Consensus 175 ga~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~--agAD~IVtG~iiee~~~~~~~~v 234 (240)
T COG1646 175 GAGDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAE--AGADTIVTGTIIEEDPDKALETV 234 (240)
T ss_pred CCCCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHH--cCCCEEEECceeecCHHHHHHHH
Confidence 2333445556655554 359999999999999999775 79999999999999996666553
No 236
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.03 Score=60.08 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
.-...|.++|++.|.+. ..|+++- ...++|+.|++.+| .++||+ |.|.+.+.+..++. .|||++=||-|
T Consensus 254 ~rl~ll~~aGvdvviLD---SSqGnS~-~qiemik~iK~~yP-~l~Via-GNVVT~~qa~nLI~--aGaDgLrVGMG 322 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILD---SSQGNSI-YQLEMIKYIKETYP-DLQIIA-GNVVTKEQAANLIA--AGADGLRVGMG 322 (503)
T ss_pred HHHHHhhhcCCcEEEEe---cCCCcch-hHHHHHHHHHhhCC-Cceeec-cceeeHHHHHHHHH--ccCceeEeccc
Confidence 34556889999999996 3455543 46789999999998 688886 88889999999886 79999766543
No 237
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.41 E-value=0.34 Score=49.84 Aligned_cols=213 Identities=12% Similarity=0.095 Sum_probs=113.9
Q ss_pred cCCcEEEccCCCCCCH--HHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCc-------HHH
Q 009196 185 FREKLYLAPLTTVGNL--PFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAY-------PDT 255 (540)
Q Consensus 185 lknrliLAPM~~vtdl--pfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~-------p~~ 255 (540)
+...+.+-|+.+..+. ..+++.. |+|.+..- ..+++.. .....+.|++++|.++. ...
T Consensus 29 ~DHG~~~Gp~~gl~~~~~~~~~i~~--~~da~~~~----~G~~~~~-------~~~~~~~~lil~ls~~t~~~~~~~~~~ 95 (264)
T PRK08227 29 FDHGYFQGPTTGLERIDINIAPLFP--YADVLMCT----RGILRSV-------VPPATNKPVVLRASGGNSILKELSNEA 95 (264)
T ss_pred CCCccccCCCccccChHHHHHHHhh--cCCEEEeC----hhHHHhc-------ccccCCCcEEEEEcCCCCCCCCCCccc
Confidence 3555556666666553 2444443 67755332 1111110 01122356888888742 122
Q ss_pred HHHHHHHHHHhCCCCEEE--ecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCC--CCChhHHHH
Q 009196 256 LARTVELIDQQCTVDFID--INMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY--FEGKNRIDS 331 (540)
Q Consensus 256 ~a~AA~~~~~~aG~D~ID--IN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~--~e~~~~~~~ 331 (540)
+.-..+.+. +.|+|+|= +|.|.+... +..+.+.++++... ..++|+.+=+-.|- .++.+.+..
T Consensus 96 l~~sVeeAv-rlGAdAV~~~v~~Gs~~E~-----------~~l~~l~~v~~ea~-~~G~Plla~~prG~~~~~~~~~ia~ 162 (264)
T PRK08227 96 VAVDMEDAV-RLNACAVAAQVFIGSEYEH-----------QSIKNIIQLVDAGL-RYGMPVMAVTAVGKDMVRDARYFSL 162 (264)
T ss_pred ceecHHHHH-HCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHHH-HhCCcEEEEecCCCCcCchHHHHHH
Confidence 333334444 46888764 455522110 11223334444432 35899887222232 122233344
Q ss_pred HHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCC-CHHHHHHHHhc--CCCcCeeeecHHH
Q 009196 332 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY-SYLDWNKHKSD--CPELASCMIARGA 408 (540)
Q Consensus 332 la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~-s~eDa~~~l~~--~~gaDgVMIGRga 408 (540)
.++...+.|+|.|-+ .|++ +.++++.+.. ++||+..||=. +.+++.+++.+ ..||.||++||=.
T Consensus 163 aaRiaaELGADiVK~-------~y~~----~~f~~vv~a~--~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNI 229 (264)
T PRK08227 163 ATRIAAEMGAQIIKT-------YYVE----EGFERITAGC--PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNI 229 (264)
T ss_pred HHHHHHHHcCCEEec-------CCCH----HHHHHHHHcC--CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhh
Confidence 455568999999965 3544 5678888877 69999999877 34445444331 2799999999998
Q ss_pred HhCCCchHHHHhc---CCCCCCHHHHHHHHH
Q 009196 409 LIKPWIFTEIKEQ---RHWDITSGERLNIMK 436 (540)
Q Consensus 409 L~nPwif~eik~~---~~~~~s~~erl~il~ 436 (540)
...|.-..-++.- -+-..|..|=++++.
T Consensus 230 fQ~~~p~~~~~al~~IVh~~~s~~eA~~~~~ 260 (264)
T PRK08227 230 FQSEHPVAMIKAVHAVVHENETAKEAYELYL 260 (264)
T ss_pred hccCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8876543333321 233445555555544
No 238
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.40 E-value=0.044 Score=55.46 Aligned_cols=143 Identities=9% Similarity=0.032 Sum_probs=91.9
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc-ccEEEEecCCCCCChhHHHHHHHHHHH
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD-KPITIKVRTGYFEGKNRIDSLIADIGT 338 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~-iPVtVKiR~G~~e~~~~~~~la~~lee 338 (540)
|++++ ++|||.|=+--.... ...|+=....-..+.+...+++|++.+. .||++-+-.|+.....++.+.++++.+
T Consensus 25 A~i~e-~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~ 100 (240)
T cd06556 25 AKQFA-DAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMR 100 (240)
T ss_pred HHHHH-HcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 33444 689999977422111 1123322223356778888888888885 799999999988765788999999999
Q ss_pred cCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCC---------------CHHHHHHHH------hcCC
Q 009196 339 WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY---------------SYLDWNKHK------SDCP 397 (540)
Q Consensus 339 aGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~---------------s~eDa~~~l------~~~~ 397 (540)
+|+++|.|-+-. ...+.|+.+++. .+||++==|.. +.+++.+++ ++ .
T Consensus 101 aGa~gv~iED~~--------~~~~~i~ai~~a---~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~-A 168 (240)
T cd06556 101 AGAAGVKIEGGE--------WHIETLQMLTAA---AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAP-A 168 (240)
T ss_pred cCCcEEEEcCcH--------HHHHHHHHHHHc---CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHH-c
Confidence 999999996531 112334455443 48888776662 122333322 33 7
Q ss_pred CcCeeeecHHHHhCCCchHHHHhc
Q 009196 398 ELASCMIARGALIKPWIFTEIKEQ 421 (540)
Q Consensus 398 gaDgVMIGRgaL~nPwif~eik~~ 421 (540)
|||+|.+= +. ++....++.+.
T Consensus 169 GAd~i~~e-~~--~~e~~~~i~~~ 189 (240)
T cd06556 169 GADLIVME-CV--PVELAKQITEA 189 (240)
T ss_pred CCCEEEEc-CC--CHHHHHHHHHh
Confidence 99999985 33 66666666654
No 239
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=96.34 E-value=0.027 Score=55.99 Aligned_cols=84 Identities=8% Similarity=-0.021 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCcEEEEeccc---ccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 331 SLIADIGTWGASAVTVHGRT---RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRt---r~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
+-+..+++.|+|+|.+-.-- .+... .+..|+.+..+++.. .+|+++-||| +++.+.++++ +||+||.+-|+
T Consensus 115 eea~~A~~~g~DYv~~GpifpT~tK~~~-~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~nv~~v~~--~Ga~gVAvvsa 188 (211)
T COG0352 115 EEALEAEELGADYVGLGPIFPTSTKPDA-PPLGLEGLREIRELV--NIPVVAIGGI-NLENVPEVLE--AGADGVAVVSA 188 (211)
T ss_pred HHHHHHHhcCCCEEEECCcCCCCCCCCC-CccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHH--hCCCeEEehhH
Confidence 44566788899999885431 12222 556799999999887 6999999999 8999999776 89999999999
Q ss_pred HHhCCCchHHHHh
Q 009196 408 ALIKPWIFTEIKE 420 (540)
Q Consensus 408 aL~nPwif~eik~ 420 (540)
++..+......++
T Consensus 189 i~~a~d~~~a~~~ 201 (211)
T COG0352 189 ITSAADPAAAAKA 201 (211)
T ss_pred hhcCCCHHHHHHH
Confidence 9988877766543
No 240
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.33 E-value=0.22 Score=50.08 Aligned_cols=148 Identities=12% Similarity=0.051 Sum_probs=92.9
Q ss_pred CeEEEEecCCcHHHHHHHHHHHHHhCCCCEE--EecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec
Q 009196 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 319 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~I--DIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR 319 (540)
.++...|.+.+...+.+-.+.++ .+|+|.| ||==|.=+++. .+| | .++++++. +.|+.|=+=
T Consensus 13 ~~I~pSil~ad~~~l~~el~~l~-~~g~d~lHiDVMDG~FVPNi---tfG------p----~~i~~i~~--~~~~DvHLM 76 (228)
T PRK08091 13 QPISVGILASNWLKFNETLTTLS-ENQLRLLHFDIADGQFSPFF---TVG------A----IAIKQFPT--HCFKDVHLM 76 (228)
T ss_pred CeEEeehhhcCHHHHHHHHHHHH-HCCCCEEEEeccCCCcCCcc---ccC------H----HHHHHhCC--CCCEEEEec
Confidence 46888999999999999999997 6788875 44334322221 223 2 44555553 556655332
Q ss_pred CCCCCChhHHHHHHHHHHHcCCcEEEEeccc-----------cc------------------------------------
Q 009196 320 TGYFEGKNRIDSLIADIGTWGASAVTVHGRT-----------RQ------------------------------------ 352 (540)
Q Consensus 320 ~G~~e~~~~~~~la~~leeaGvdaItVHgRt-----------r~------------------------------------ 352 (540)
. .+...+++.+.++|++.|++|.-. ++
T Consensus 77 v------~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~ 150 (228)
T PRK08091 77 V------RDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLD 150 (228)
T ss_pred c------CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 2 234567777888888888887531 11
Q ss_pred CccCCCcC----HHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCc
Q 009196 353 QRYSKLAD----WDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 414 (540)
Q Consensus 353 q~y~g~ad----w~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwi 414 (540)
.++.|... ++-|+++++... -++.|-.-||| +.+.+.++.+ .|||.+.+|+++..++..
T Consensus 151 PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~--aGaD~~V~GSalF~~~d~ 216 (228)
T PRK08091 151 PRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSM-TLELASYLKQ--HQIDWVVSGSALFSQGEL 216 (228)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH--CCCCEEEEChhhhCCCCH
Confidence 11222211 334444443321 14678899999 5788888665 799999999998776653
No 241
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.30 E-value=0.023 Score=60.46 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=58.5
Q ss_pred HHHHHHcCCcEEEEecccc---cCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 333 IADIGTWGASAVTVHGRTR---QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr---~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+..+.+.|+|+|.+..-.. +... .+..++++..+++.+ ++|||+-||| +.+.+.+++. .|+++|.++++++
T Consensus 253 ~~~A~~~GaDYI~lGPvf~T~tKp~~-~~~Gle~l~~~~~~~--~iPv~AiGGI-~~~ni~~l~~--~Ga~gVAvisaI~ 326 (347)
T PRK02615 253 MAKAIAEGADYIGVGPVFPTPTKPGK-APAGLEYLKYAAKEA--PIPWFAIGGI-DKSNIPEVLQ--AGAKRVAVVRAIM 326 (347)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCC-CCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHH--cCCcEEEEeHHHh
Confidence 3445678999999854321 1122 356799999999887 6999999999 5899988775 7999999999998
Q ss_pred hCCCch
Q 009196 410 IKPWIF 415 (540)
Q Consensus 410 ~nPwif 415 (540)
..+...
T Consensus 327 ~a~dp~ 332 (347)
T PRK02615 327 GAEDPK 332 (347)
T ss_pred CCCCHH
Confidence 654433
No 242
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.29 E-value=0.024 Score=56.60 Aligned_cols=80 Identities=5% Similarity=-0.069 Sum_probs=59.6
Q ss_pred HHHHHcCCcEEEEeccc-ccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 334 ADIGTWGASAVTVHGRT-RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 334 ~~leeaGvdaItVHgRt-r~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
..+.+.|+|+|.+..-. .......+..++.++.+++.+ ++||++-||| +.+++.+++. .||+||.+-++++..+
T Consensus 125 ~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~n~~~~~~--~GA~giAvisai~~~~ 199 (221)
T PRK06512 125 MEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLASAVEVAE--TGAEFVALERAVFDAH 199 (221)
T ss_pred HHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHHHHHHHHH--hCCCEEEEhHHhhCCC
Confidence 33567999999986531 111123345677888888877 7999999999 9999999776 7999999999998766
Q ss_pred CchHHH
Q 009196 413 WIFTEI 418 (540)
Q Consensus 413 wif~ei 418 (540)
.....+
T Consensus 200 dp~~a~ 205 (221)
T PRK06512 200 DPPLAV 205 (221)
T ss_pred CHHHHH
Confidence 544443
No 243
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.28 E-value=0.075 Score=59.34 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+..+-++.|.++|+|.|.|-.- ++.+ ..-|+.|++|++..| +++|| .|+|.|.+++..+++ .|||+|.+|
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~---~g~~-~~~~~~i~~ik~~~p-~~~vi-~g~v~t~e~a~~a~~--aGaD~i~vg 317 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSS---QGDS-IYQLEMIKYIKKTYP-ELDVI-GGNVVTMYQAQNLIQ--AGVDGLRVG 317 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCC---CCCc-HHHHHHHHHHHHhCC-CCcEE-EecCCCHHHHHHHHH--cCcCEEEEC
Confidence 4567889999999999999642 1111 134799999999886 45554 589999999999776 799999775
No 244
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.27 E-value=0.044 Score=56.44 Aligned_cols=117 Identities=13% Similarity=0.062 Sum_probs=80.8
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
|++++ ++|+-.|-.=---|.+. +...|-+=++.|+-+ +++++.+++||.-++|.|+ ..=++.|.++
T Consensus 21 a~~ae-~aga~~v~~~~~~~~~~--~~~~~v~R~~~~~~I----~~Ik~~V~iPVIGi~K~~~-------~~Ea~~L~ea 86 (283)
T cd04727 21 ARIAE-EAGAVAVMALERVPADI--RAAGGVARMADPKMI----KEIMDAVSIPVMAKVRIGH-------FVEAQILEAL 86 (283)
T ss_pred HHHHH-HcCceEEeeeccCchhh--hhcCCeeecCCHHHH----HHHHHhCCCCeEEeeehhH-------HHHHHHHHHc
Confidence 45555 67865554422346654 233455666677664 4555567999999999875 3447789999
Q ss_pred CCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 340 GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 340 GvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
|+|.|--+.|.+. ..+.+..++..+ ++|++ .|+.|.+++..... .|+|.|-
T Consensus 87 GvDiIDaT~r~rP-------~~~~~~~iK~~~--~~l~M--AD~stleEal~a~~--~Gad~I~ 137 (283)
T cd04727 87 GVDMIDESEVLTP-------ADEEHHIDKHKF--KVPFV--CGARNLGEALRRIS--EGAAMIR 137 (283)
T ss_pred CCCEEeccCCCCc-------HHHHHHHHHHHc--CCcEE--ccCCCHHHHHHHHH--CCCCEEE
Confidence 9999954443322 356788898887 57776 69999999999887 6888663
No 245
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.15 E-value=0.081 Score=52.35 Aligned_cols=149 Identities=11% Similarity=0.112 Sum_probs=95.0
Q ss_pred CeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc------CCccccccCCchHHHHHHH------
Q 009196 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID-----IVVN------KGAGSCLLTKPMRMKGIIE------ 304 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~-----~v~~------~G~GsaLl~~p~~l~eIv~------ 304 (540)
.+++.=|.+.++++..+.++.+. +.|++.|||-+--|.. .+++ -|.|+ .-+++.+.+.++
T Consensus 8 ~~liaVlr~~~~e~a~~~~~al~-~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGT--Vl~~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 8 AKIVPVIRIDDVDDALPLAKALI-EGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGT--VLNPEQLRQAVDAGAQFI 84 (204)
T ss_pred CCEEEEEecCCHHHHHHHHHHHH-HcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEe--CCCHHHHHHHHHcCCCEE
Confidence 34555578899999999999888 7899999998765532 1111 12222 234444444333
Q ss_pred -----------HhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCC
Q 009196 305 -----------ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD 373 (540)
Q Consensus 305 -----------av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~ 373 (540)
..++. ++|+.- |.. +.-++ ..+.++|++.|-+.+-. .+.| -.|++.++.-+|
T Consensus 85 vsP~~~~~v~~~~~~~-~i~~iP----G~~----TptEi-~~A~~~Ga~~vKlFPA~---~~GG---~~yikal~~plp- 147 (204)
T TIGR01182 85 VSPGLTPELAKHAQDH-GIPIIP----GVA----TPSEI-MLALELGITALKLFPAE---VSGG---VKMLKALAGPFP- 147 (204)
T ss_pred ECCCCCHHHHHHHHHc-CCcEEC----CCC----CHHHH-HHHHHCCCCEEEECCch---hcCC---HHHHHHHhccCC-
Confidence 22221 233222 211 11122 23456788888886521 1112 368999998888
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 374 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 374 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
++|++..||| +.+.+.+++. .|+.+|.+|..+..+..
T Consensus 148 ~i~~~ptGGV-~~~N~~~~l~--aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 148 QVRFCPTGGI-NLANVRDYLA--APNVACGGGSWLVPKDL 184 (204)
T ss_pred CCcEEecCCC-CHHHHHHHHh--CCCEEEEEChhhcCchh
Confidence 7999999999 6688999887 79999999988875444
No 246
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.15 E-value=0.81 Score=47.79 Aligned_cols=205 Identities=12% Similarity=0.057 Sum_probs=119.2
Q ss_pred CCcEEEccCCCCCCHHHHHHHHHhCCCEEEe-cccee-chhccCCh--hhhh-hh---h--cccCCCeEEEEec---CCc
Q 009196 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCG-EMAMC-TNLLQGQA--SEWA-LL---R--RHSSEDLFGVQIC---GAY 252 (540)
Q Consensus 186 knrliLAPM~~vtdlpfR~l~~~~Gadl~~T-Emi~a-~~l~~g~~--~e~~-ll---~--~~~~e~p~~vQL~---G~~ 252 (540)
++..+++| ++-|..--+++.+.|.+.+++ -...+ ..+..-.. -++. ++ + ....+-|+++=+= |+.
T Consensus 14 ~~~~l~~p--~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~ 91 (294)
T TIGR02319 14 APEILVVP--SAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNA 91 (294)
T ss_pred CCCcEEee--cCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCc
Confidence 34566666 888888888888899988875 32222 21222111 1111 11 1 2234567776653 444
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCC--CCChhHH
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY--FEGKNRI 329 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~--~e~~~~~ 329 (540)
++ ..+.++.+. ++|+.+|.|-=... ++.+..-.|-.|. .++...+=|++++++. +.++.|=-|+-. ....+++
T Consensus 92 ~~-v~r~V~~~~-~aGaagi~IEDq~~-pK~cg~~~~k~lv-~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~dea 167 (294)
T TIGR02319 92 MS-VWRATREFE-RVGIVGYHLEDQVN-PKRCGHLEGKRLI-STEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEA 167 (294)
T ss_pred HH-HHHHHHHHH-HcCCeEEEEECCCC-ccccCCCCCcccc-CHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHH
Confidence 55 678888887 79999999964321 1222111233344 3344444445554443 445666567532 1234677
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceE---EEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV---LGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPV---IgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
++=++...++|+|.|-+|+ +.+.+.+.++.+.++ .|+ +..|+-.-.-.+.+ |.+ .|+..|..|-
T Consensus 168 I~Ra~aY~eAGAD~ifi~~---------~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~e-L~~-lG~~~v~~~~ 234 (294)
T TIGR02319 168 IRRSREYVAAGADCIFLEA---------MLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKE-LES-IGYNLAIYPL 234 (294)
T ss_pred HHHHHHHHHhCCCEEEecC---------CCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHH-HHH-cCCcEEEEcH
Confidence 8888888999999999985 234577889988884 565 33443222123334 333 6999999995
Q ss_pred HHH
Q 009196 407 GAL 409 (540)
Q Consensus 407 gaL 409 (540)
.++
T Consensus 235 ~~~ 237 (294)
T TIGR02319 235 SGW 237 (294)
T ss_pred HHH
Confidence 554
No 247
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.10 E-value=0.021 Score=54.70 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=53.5
Q ss_pred HHHHHHcCCcEEEEeccc---ccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 333 IADIGTWGASAVTVHGRT---RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 333 a~~leeaGvdaItVHgRt---r~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
+..+.+.|+|++.+..-- ....+ .+..|+.+.++++.. ++||++-||| +++++.++++ .|++||.+-|+.
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~--~Ga~gvAvi~aI 180 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGA-PPLGLDGLREIARAS--PIPVYALGGI-TPENIPELRE--AGADGVAVISAI 180 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHH--TT-SEEEESHHH
T ss_pred HHHhhhcCCCEEEECCccCCCCCccc-cccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHH--cCCCEEEEEeeC
Confidence 667788999999997642 12223 556799999999998 6999999999 7999998775 899999998864
No 248
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.08 E-value=0.045 Score=54.21 Aligned_cols=83 Identities=11% Similarity=-0.050 Sum_probs=61.6
Q ss_pred HHHHHHcCCcEEEEeccc---ccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 333 IADIGTWGASAVTVHGRT---RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 333 a~~leeaGvdaItVHgRt---r~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+..+.+.|+|+|.+..-. .+..+..+..|+.+.++.+... ++||++-||| +.+++.+++. .|++||.+-++++
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~-~~PV~AiGGI-~~~ni~~l~~--~Ga~GiAvisai~ 190 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLA-DYPTVAIGGI-SLERAPAVLA--TGVGSIAVVSAIT 190 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCC-CHHHHHHHHH--cCCCEEEEhhHhh
Confidence 355567899999986531 1223445567888888877642 6999999999 6899999776 7999999999998
Q ss_pred hCCCchHHHH
Q 009196 410 IKPWIFTEIK 419 (540)
Q Consensus 410 ~nPwif~eik 419 (540)
..+.+-+.++
T Consensus 191 ~~~d~~~~~~ 200 (211)
T PRK03512 191 QAADWRAATA 200 (211)
T ss_pred CCCCHHHHHH
Confidence 7666544443
No 249
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.04 E-value=0.066 Score=54.65 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=83.4
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccccc-EEEEecCC-CCCChhHHHHHHHH-H
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP-ITIKVRTG-YFEGKNRIDSLIAD-I 336 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iP-VtVKiR~G-~~e~~~~~~~la~~-l 336 (540)
|++++ ++|||.|= .|-....+. -|+-....-..+.+...+++|++.++.| |++-+--| +..+.+++.+-+.+ +
T Consensus 25 A~l~e-~aG~d~i~--vGds~~~~~-lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~ 100 (254)
T cd06557 25 AKLAD-EAGVDVIL--VGDSLGMVV-LGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLM 100 (254)
T ss_pred HHHHH-HcCCCEEE--ECHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence 34444 78999994 354333222 3554445556788888999999999999 77766523 33335555555544 4
Q ss_pred HHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEE-----------EeCCCC----CHHHHHHH------Hhc
Q 009196 337 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL-----------GNGDIY----SYLDWNKH------KSD 395 (540)
Q Consensus 337 eeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVI-----------gNGdI~----s~eDa~~~------l~~ 395 (540)
+++|+++|.|-+.. +.+..|+..+...|||+ ..||.. +.+.+.++ +++
T Consensus 101 ~~aGa~aVkiEd~~-----------~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~ 169 (254)
T cd06557 101 KEAGADAVKLEGGA-----------EVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEE 169 (254)
T ss_pred HHhCCeEEEEcCcH-----------HHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHH
Confidence 55999999996531 33444443333368988 556553 33222222 334
Q ss_pred CCCcCeeeecHHHHhCCCchHHHHh
Q 009196 396 CPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 396 ~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
.|||++.+= +. - ..+.++|-+
T Consensus 170 -AGA~~i~lE-~v-~-~~~~~~i~~ 190 (254)
T cd06557 170 -AGAFALVLE-CV-P-AELAKEITE 190 (254)
T ss_pred -CCCCEEEEc-CC-C-HHHHHHHHH
Confidence 799998763 11 1 135555544
No 250
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.00 E-value=0.09 Score=52.28 Aligned_cols=150 Identities=11% Similarity=0.062 Sum_probs=92.6
Q ss_pred CeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc------cCCcc---------------ccccCC
Q 009196 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI-----VV------NKGAG---------------SCLLTK 295 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~-----v~------~~G~G---------------saLl~~ 295 (540)
.+++.=|.+.++++....++.+. +.|++.|||-+--|... .+ .-|.| +.++--
T Consensus 15 ~~~iaV~r~~~~~~a~~i~~al~-~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 15 GPVVPVIVINKLEDAVPLAKALV-AGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHH-HcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 34555588999999999999988 67999999986554210 00 01222 222222
Q ss_pred chHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCc
Q 009196 296 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL 375 (540)
Q Consensus 296 p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~I 375 (540)
|-.-.++++..++ .++|+.- |.. +.-+ +..+.++|++.|-++.-. .. + ...|++.++.-+| ++
T Consensus 94 P~~~~~vi~~a~~-~~i~~iP----G~~----TptE-i~~a~~~Ga~~vKlFPa~---~~-g--g~~~lk~l~~p~p-~~ 156 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLIP----GVS----TPSE-LMLGMELGLRTFKFFPAE---AS-G--GVKMLKALAGPFP-DV 156 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEeC----CCC----CHHH-HHHHHHCCCCEEEEccch---hc-c--CHHHHHHHhccCC-CC
Confidence 3233333333332 2333321 221 1223 556778999999886421 11 1 3578999998888 79
Q ss_pred eEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 376 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 376 PVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
|++..||| +.+.+.+++. .| +.+.+|++.|.++.
T Consensus 157 ~~~ptGGV-~~~ni~~~l~--ag-~v~~vggs~L~~~~ 190 (212)
T PRK05718 157 RFCPTGGI-SPANYRDYLA--LP-NVLCIGGSWMVPKD 190 (212)
T ss_pred eEEEeCCC-CHHHHHHHHh--CC-CEEEEEChHhCCcc
Confidence 99999999 6789999887 45 45566666666544
No 251
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.93 E-value=0.091 Score=49.68 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCC-CChhHHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF-EGKNRID 330 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~-e~~~~~~ 330 (540)
+.+.+.+.++.+. +.|+++|.++. +.+..+.+.+... .+||.+++..+.. ....++.
T Consensus 11 d~~~~~~~~~~~~-~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~~~~~~~~ 68 (201)
T cd00945 11 TLEDIAKLCDEAI-EYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGLTTTEVKV 68 (201)
T ss_pred CHHHHHHHHHHHH-HhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCCCcHHHHH
Confidence 7788888888887 57999999984 3333333333221 4788888765320 1246788
Q ss_pred HHHHHHHHcCCcEEEEecccccCccC--CCcCHHHHHHHHHHcCCCceEEE-e-CCCC-CHHHHHHH---HhcCCCcCee
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYS--KLADWDYIYQCARKASDDLQVLG-N-GDIY-SYLDWNKH---KSDCPELASC 402 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~--g~adw~~I~~i~~~~~~~IPVIg-N-GdI~-s~eDa~~~---l~~~~gaDgV 402 (540)
+.++.+.++|++++.++.=.. ...+ ...-.++++++++.++.++||+. | -+.. +++...++ +.. .|+|+|
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~-~g~~~i 146 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIG-SLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAE-AGADFI 146 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHH-HHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHH-hCCCEE
Confidence 999999999999999874211 0011 11225777888887411588774 2 2222 66666653 334 789998
Q ss_pred eecHH
Q 009196 403 MIARG 407 (540)
Q Consensus 403 MIGRg 407 (540)
=...|
T Consensus 147 K~~~~ 151 (201)
T cd00945 147 KTSTG 151 (201)
T ss_pred EeCCC
Confidence 76654
No 252
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.92 E-value=0.055 Score=57.02 Aligned_cols=94 Identities=9% Similarity=0.046 Sum_probs=64.8
Q ss_pred hHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCce
Q 009196 297 MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ 376 (540)
Q Consensus 297 ~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IP 376 (540)
+...+.++.++....+.+ -.|.. .+..+.+..+.++|++.|.|.... +.. ..-++.|+.+++..| ++|
T Consensus 70 ~~~~~~i~~vk~~l~v~~----~~~~~---~~~~~~~~~l~eagv~~I~vd~~~---G~~-~~~~~~i~~ik~~~p-~v~ 137 (325)
T cd00381 70 EEQAEEVRKVKGRLLVGA----AVGTR---EDDKERAEALVEAGVDVIVIDSAH---GHS-VYVIEMIKFIKKKYP-NVD 137 (325)
T ss_pred HHHHHHHHHhccCceEEE----ecCCC---hhHHHHHHHHHhcCCCEEEEECCC---CCc-HHHHHHHHHHHHHCC-Cce
Confidence 445566666664333222 23321 345677888889999999885422 111 122578899998876 589
Q ss_pred EEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 377 VLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 377 VIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
|++ |.|.|.+++..+++ .|||+|.+|
T Consensus 138 Vi~-G~v~t~~~A~~l~~--aGaD~I~vg 163 (325)
T cd00381 138 VIA-GNVVTAEAARDLID--AGADGVKVG 163 (325)
T ss_pred EEE-CCCCCHHHHHHHHh--cCCCEEEEC
Confidence 887 99999999999765 899999984
No 253
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=95.88 E-value=0.32 Score=48.44 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=99.9
Q ss_pred hhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccc
Q 009196 233 ALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK 312 (540)
Q Consensus 233 ~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i 312 (540)
+.++..-.+.+++.=+-..+...+ -++.+. ++|+|.+-+=+.-|. .-+...++..++ .++
T Consensus 48 ~~lr~~~pd~~IvAD~Kt~D~G~~--e~~ma~-~aGAd~~tV~g~A~~----------------~TI~~~i~~A~~-~~~ 107 (217)
T COG0269 48 RALRELFPDKIIVADLKTADAGAI--EARMAF-EAGADWVTVLGAADD----------------ATIKKAIKVAKE-YGK 107 (217)
T ss_pred HHHHHHCCCCeEEeeeeecchhHH--HHHHHH-HcCCCEEEEEecCCH----------------HHHHHHHHHHHH-cCC
Confidence 334444456666665555444333 334444 679999988543333 334444544433 355
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCC-cCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL-ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 391 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~-adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 391 (540)
-+-+-+--.| +..+-++.++++|++.+.+|-..-.|. .|. .-|+.+..+++.....+.|-..||| +++++..
T Consensus 108 ~v~iDl~~~~-----~~~~~~~~l~~~gvd~~~~H~g~D~q~-~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~ 180 (217)
T COG0269 108 EVQIDLIGVW-----DPEQRAKWLKELGVDQVILHRGRDAQA-AGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPL 180 (217)
T ss_pred eEEEEeecCC-----CHHHHHHHHHHhCCCEEEEEecccHhh-cCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHH
Confidence 5666554333 345677888889999999995444444 333 3378888888877434799999999 8999999
Q ss_pred HHhcCCCcCeeeecHHHHhCCC
Q 009196 392 HKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 392 ~l~~~~gaDgVMIGRgaL~nPw 413 (540)
+.. .+++.|.+||+.-.-..
T Consensus 181 ~~~--~~~~ivIvGraIt~a~d 200 (217)
T COG0269 181 FKG--IGADIVIVGRAITGAKD 200 (217)
T ss_pred Hhc--CCCCEEEECchhcCCCC
Confidence 775 68999999999876554
No 254
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.87 E-value=0.39 Score=48.37 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=91.6
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEE--EecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 320 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~I--DIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~ 320 (540)
.+...|.+.+...+.+-.+.+. . |+|.| ||==|.=+++. .+| -.+++++++.+++|+.|=+=.
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~-~-g~d~lH~DiMDG~FVPN~---tfg----------~~~i~~ir~~t~~~~DvHLMv 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLN-S-KADYFHIDIMDGHFVPNL---TLS----------PFFVSQVKKLASKPLDVHLMV 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHH-h-CCCEEEEecccCccCCCc---ccC----------HHHHHHHHhcCCCCeEEEEEe
Confidence 3678899999999999998886 4 78875 44324322221 222 356777877777887774432
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEecccc----------------------------------------------cCc
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHGRTR----------------------------------------------QQR 354 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHgRtr----------------------------------------------~q~ 354 (540)
.+...+++.+.++|++.|++|.-.. ..+
T Consensus 69 ------~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PG 142 (229)
T PRK09722 69 ------TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPG 142 (229)
T ss_pred ------cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCC
Confidence 2345678888889999999986420 011
Q ss_pred cCCCcC----HHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 355 YSKLAD----WDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 355 y~g~ad----w~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+.|... ++-|+++++... .++-|-.-|||+ .+.+.++.+ .|||.+.+|++++
T Consensus 143 f~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~--aGad~~V~Gss~i 201 (229)
T PRK09722 143 FAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLME--AGADVFIVGTSGL 201 (229)
T ss_pred CcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHH--cCCCEEEEChHHH
Confidence 222111 233444443221 146789999995 778888665 7999999998744
No 255
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=95.86 E-value=0.045 Score=60.31 Aligned_cols=107 Identities=14% Similarity=0.240 Sum_probs=75.0
Q ss_pred chHHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCc--------cCCCcCHHH-HH
Q 009196 296 PMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--------YSKLADWDY-IY 365 (540)
Q Consensus 296 p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~--------y~g~adw~~-I~ 365 (540)
++-+.+.|..++++. ..+|+||+-.+.- ...++--+.++++|.|+|.|-..-.+ +.|. -|++ +.
T Consensus 287 ieDLaqlI~dLk~~~~~~~I~VKlva~~~-----v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~Gi-P~e~gla 360 (485)
T COG0069 287 IEDLAQLIKDLKEANPWAKISVKLVAEHG-----VGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGI-PWELGLA 360 (485)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEecccc-----hHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCc-hHHHHHH
Confidence 567888899998887 4679999976421 11222237889999999987532211 2221 2443 33
Q ss_pred HHHHH-----cCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 366 QCARK-----ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 366 ~i~~~-----~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
++.+. +.+.+-|++.|++.|..|+.+++. .|||.|-+|+++|.
T Consensus 361 e~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~a--LGAd~v~~gTa~li 408 (485)
T COG0069 361 ETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAA--LGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHHHcCCcceeEEEecCCccCHHHHHHHHH--hCcchhhhchHHHH
Confidence 33332 234688999999999999999987 79999999999985
No 256
>PRK14057 epimerase; Provisional
Probab=95.82 E-value=0.47 Score=48.51 Aligned_cols=148 Identities=10% Similarity=0.040 Sum_probs=90.1
Q ss_pred CCeEEEEecCCcHHHHHHHHHHHHHhCCCCEE--EecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 241 EDLFGVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 241 e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~I--DIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
..++...|.+.+...+.+..+.++ ++|+|.| ||==|.=+++. .+| | ++++++++ ++|+-|=+
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~-~~g~d~lHiDVMDG~FVPNi---tfG------p----~~i~~i~~--~~p~DvHL 82 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLE-ALNQPLLHLDLMDGQFCPQF---TVG------P----WAVGQLPQ--TFIKDVHL 82 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHH-HCCCCEEEEeccCCccCCcc---ccC------H----HHHHHhcc--CCCeeEEe
Confidence 356889999999999999999997 6798875 44334322221 223 2 34455544 45655533
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCcEEEEeccc-----------cc-----------------------------------
Q 009196 319 RTGYFEGKNRIDSLIADIGTWGASAVTVHGRT-----------RQ----------------------------------- 352 (540)
Q Consensus 319 R~G~~e~~~~~~~la~~leeaGvdaItVHgRt-----------r~----------------------------------- 352 (540)
=. .+...+++.+.++|++.|++|.-. ++
T Consensus 83 MV------~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD 156 (254)
T PRK14057 83 MV------ADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVE 156 (254)
T ss_pred ee------CCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCC
Confidence 22 124456777777788888777531 11
Q ss_pred --------CccCCCcC----HHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 353 --------QRYSKLAD----WDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 353 --------q~y~g~ad----w~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
.++.|... ++-|+++++..+ .++.|-.-||| +.+.+.++.+ .|||.+.+|+++..++.
T Consensus 157 ~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~--aGad~~V~GSalF~~~d 229 (254)
T PRK14057 157 VIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIA--QGIDRVVSGSALFRDDR 229 (254)
T ss_pred EEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH--CCCCEEEEChHhhCCCC
Confidence 11112111 223333333221 14778999999 6778888665 79999999998765544
No 257
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=95.82 E-value=0.064 Score=57.14 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=75.4
Q ss_pred CccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCC-hhHHHHHHHHHHHcCCcEEEEecccccC--ccCCCcCH-
Q 009196 287 GAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEG-KNRIDSLIADIGTWGASAVTVHGRTRQQ--RYSKLADW- 361 (540)
Q Consensus 287 G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~-~~~~~~la~~leeaGvdaItVHgRtr~q--~y~g~adw- 361 (540)
|.+++.+.+|+ +.+-++.+++.. +.||.+=+-. ... ..+...+.+.++..+++++.||--..+. ...+..+|
T Consensus 96 Gs~~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~--~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~ 172 (352)
T PRK05437 96 GSQRAALKDPE-LADSFSVVRKVAPDGLLFANLGA--VQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFR 172 (352)
T ss_pred cccHhhccChh-hHHHHHHHHHHCCCceEEeecCc--cccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHH
Confidence 44455667888 777778888776 7898884433 211 1224556667777899999999643211 22333455
Q ss_pred ---HHHHHHHHHcCCCceEEE--eCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 362 ---DYIYQCARKASDDLQVLG--NGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 362 ---~~I~~i~~~~~~~IPVIg--NGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+.++.+++.+ ++||+. +|.-.+.+++..+.+ .|+|+|.|+
T Consensus 173 ~~le~i~~i~~~~--~vPVivK~~g~g~s~~~a~~l~~--~Gvd~I~Vs 217 (352)
T PRK05437 173 GWLDNIAEIVSAL--PVPVIVKEVGFGISKETAKRLAD--AGVKAIDVA 217 (352)
T ss_pred HHHHHHHHHHHhh--CCCEEEEeCCCCCcHHHHHHHHH--cCCCEEEEC
Confidence 5678888887 699996 666678988877554 799999873
No 258
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.74 E-value=0.12 Score=52.14 Aligned_cols=195 Identities=21% Similarity=0.205 Sum_probs=120.1
Q ss_pred CCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccc-eechhccCChh----hhh-hh---h--cccCCCeEEEEec---CC
Q 009196 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMA-MCTNLLQGQAS----EWA-LL---R--RHSSEDLFGVQIC---GA 251 (540)
Q Consensus 186 knrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi-~a~~l~~g~~~----e~~-ll---~--~~~~e~p~~vQL~---G~ 251 (540)
+++.+++| ++-|..--+++.+.|.+.++|--. .+..+ |.+. ++. ++ + .....-|+++=+= |+
T Consensus 7 ~~~~l~~p--~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~--G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~ 82 (238)
T PF13714_consen 7 PGKPLVLP--NVWDALSARLAERAGFDAIATSGAGVAASL--GYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGN 82 (238)
T ss_dssp SSSSEEEE--EESSHHHHHHHHHTT-SEEEEHHHHHHHHT--TS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSS
T ss_pred CCCcEEeC--CCcCHHHHHHHHHcCCCEEEechHHHHHHc--CCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCc
Confidence 34566777 777888888888899887766433 23222 3321 111 11 1 1223578887664 56
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCC-CCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCC----CCC
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY----FEG 325 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~G-CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~----~e~ 325 (540)
++..+.+.++.+. .+|+.+|.|.=. |- . .|..|+ .++.+.+=|++++++. +..+.|=-|+.. .+.
T Consensus 83 ~~~~v~~tv~~~~-~aG~agi~IEDq~~~------~-~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~ 153 (238)
T PF13714_consen 83 DPENVARTVRELE-RAGAAGINIEDQRCG------H-GGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEG 153 (238)
T ss_dssp SHHHHHHHHHHHH-HCT-SEEEEESBSTT------T-STT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHH
T ss_pred hhHHHHHHHHHHH-HcCCcEEEeeccccC------C-CCCcee-CHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCC
Confidence 6999999999998 799999999755 32 1 344455 5555555566665544 333555557632 123
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCC--CCCHHHHHHHHhcCCCcCeee
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD--IYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGd--I~s~eDa~~~l~~~~gaDgVM 403 (540)
.+++++=++...++|+|.|.+++- .+-+.++++.+.+ ++|+..+-. -.|.++.. + -|+..|.
T Consensus 154 ~deaI~R~~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~--~~Pl~v~~~~~~~~~~eL~----~-lGv~~v~ 217 (238)
T PF13714_consen 154 LDEAIERAKAYAEAGADMIFIPGL---------QSEEEIERIVKAV--DGPLNVNPGPGTLSAEELA----E-LGVKRVS 217 (238)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETTS---------SSHHHHHHHHHHH--SSEEEEETTSSSS-HHHHH----H-TTESEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhc--CCCEEEEcCCCCCCHHHHH----H-CCCcEEE
Confidence 457777788889999999999864 3345688999888 588877663 23444433 3 6899999
Q ss_pred ecHHHH
Q 009196 404 IARGAL 409 (540)
Q Consensus 404 IGRgaL 409 (540)
+|-.++
T Consensus 218 ~~~~~~ 223 (238)
T PF13714_consen 218 YGNSLL 223 (238)
T ss_dssp ETSHHH
T ss_pred EcHHHH
Confidence 886554
No 259
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.61 E-value=0.14 Score=53.29 Aligned_cols=152 Identities=11% Similarity=0.138 Sum_probs=86.8
Q ss_pred HHHHHHhCCCCEEEecCC-CC-CcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHH
Q 009196 260 VELIDQQCTVDFIDINMG-CP-IDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 337 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~G-CP-~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~le 337 (540)
|++++ .+||++|=+-.. +- ...-.-|+ | +-..+.+.+.++.|..++++||+|-+-.|+- +..++...++.++
T Consensus 30 Ari~e-~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG-~~~~v~r~V~~~~ 103 (292)
T PRK11320 30 ALLAE-RAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFG-GAFNIARTVKSMI 103 (292)
T ss_pred HHHHH-HcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCC-CHHHHHHHHHHHH
Confidence 34454 789999877432 11 00000111 1 1245566778888888889999999999986 6677888999999
Q ss_pred HcCCcEEEEecccc--cCccC-CC--cC-HHHHHHHH---HHcC-CCceEEEeCCCCC---HHHHHHHH---hcCCCcCe
Q 009196 338 TWGASAVTVHGRTR--QQRYS-KL--AD-WDYIYQCA---RKAS-DDLQVLGNGDIYS---YLDWNKHK---SDCPELAS 401 (540)
Q Consensus 338 eaGvdaItVHgRtr--~q~y~-g~--ad-w~~I~~i~---~~~~-~~IPVIgNGdI~s---~eDa~~~l---~~~~gaDg 401 (540)
++||.+|+|-.... ..++. +. .. -+++.+|+ +... .++-|++==|... .+++.+-. .+ .|||+
T Consensus 104 ~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~e-AGAD~ 182 (292)
T PRK11320 104 KAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVE-AGADM 182 (292)
T ss_pred HcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHH-cCCCE
Confidence 99999999955331 11111 11 11 13444444 3322 1233444444433 44443311 13 79999
Q ss_pred eeecHHHHhCCCchHHHHh
Q 009196 402 CMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 402 VMIGRgaL~nPwif~eik~ 420 (540)
|++-- +.++.-++++.+
T Consensus 183 ifi~~--~~~~~~i~~~~~ 199 (292)
T PRK11320 183 IFPEA--MTELEMYRRFAD 199 (292)
T ss_pred EEecC--CCCHHHHHHHHH
Confidence 99852 445544444443
No 260
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.58 E-value=0.21 Score=53.00 Aligned_cols=123 Identities=10% Similarity=0.135 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~G~~e~~~~~ 329 (540)
+++.+.+-|+... +.||..+-|..| .+++.-.+.|++++++++ +.+.|-.-.+| +..++
T Consensus 138 ~~e~~~~~a~~~~-~~Gf~~~Kikvg----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~--~~~~A 198 (352)
T cd03328 138 DDDRLREQLSGWV-AQGIPRVKMKIG----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAY--SRKQA 198 (352)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEeecC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCC--CHHHH
Confidence 5777766666555 469999998643 124666788899998883 56777666677 45789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHH--cCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARK--ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~--~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
.++++.|++.++.++ +|.. .+-|++-.+++++. + ++||.+.=.+.+..++.+++.. ..+|.|++
T Consensus 199 ~~~~~~l~~~~~~~~-------EeP~-~~~d~~~~~~l~~~~~~--~iPIa~gE~~~~~~~~~~li~~-~a~div~~ 264 (352)
T cd03328 199 LALARAFADEGVTWF-------EEPV-SSDDLAGLRLVRERGPA--GMDIAAGEYAYTLAYFRRLLEA-HAVDVLQA 264 (352)
T ss_pred HHHHHHHHHhCcchh-------hCCC-ChhhHHHHHHHHhhCCC--CCCEEecccccCHHHHHHHHHc-CCCCEEec
Confidence 999999999888765 3433 34578888999998 6 6999987789999999999885 67888764
No 261
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.56 E-value=0.17 Score=52.61 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=68.8
Q ss_pred chHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCc-----cC---CCcC----HHH
Q 009196 296 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR-----YS---KLAD----WDY 363 (540)
Q Consensus 296 p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~-----y~---g~ad----w~~ 363 (540)
.+.+.+.++.|..++++||++-+-.| .+...+.+.++.+.++||.+|+|-..+...+ .. .... .+.
T Consensus 63 ~~e~~~~~~~I~~a~~~Pv~~D~d~G--g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~k 140 (285)
T TIGR02320 63 WTQRLDVVEFMFDVTTKPIILDGDTG--GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGK 140 (285)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecCCC--CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHH
Confidence 45556678888888899999999999 3677888999999999999999943321110 01 0011 233
Q ss_pred HHHHHHH-cCCCceEEEeCCCC----CHHHHHHHH---hcCCCcCeeeec
Q 009196 364 IYQCARK-ASDDLQVLGNGDIY----SYLDWNKHK---SDCPELASCMIA 405 (540)
Q Consensus 364 I~~i~~~-~~~~IPVIgNGdI~----s~eDa~~~l---~~~~gaDgVMIG 405 (540)
|+.+++. ...+++|++-=|.+ ..+++.+.. .+ .|||+|+|=
T Consensus 141 I~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~e-AGAD~ifv~ 189 (285)
T TIGR02320 141 IRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAE-AGADGIMIH 189 (285)
T ss_pred HHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHH-cCCCEEEec
Confidence 3444433 22358888874532 355554322 23 799999985
No 262
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.55 E-value=0.32 Score=51.58 Aligned_cols=142 Identities=11% Similarity=0.104 Sum_probs=100.7
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecC
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT 320 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~ 320 (540)
|+-.-+.+.+++.+.+.++.+. ..||..|-|..|-+.... .. -.+++.-.+.|+++++.+ ++.+.|-.--
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~~KiKvg~~~~~~---~~----~~~~~~D~~~i~avr~~~g~~~~l~vDaN~ 185 (352)
T cd03325 114 RVYSWIGGDRPSDVAEAARARR-EAGFTAVKMNATEELQWI---DT----SKKVDAAVERVAALREAVGPDIDIGVDFHG 185 (352)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCCcccC---CC----HHHHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 4444455567887766666555 469999999876322110 00 013556678888888877 4566666666
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
+|+ ..++.++++.|++.|+.+| +|.. .+-+|+..+++++.. ++||.+.=.+.++.++..++.. ..+|
T Consensus 186 ~~~--~~~A~~~~~~l~~~~i~~i-------EeP~-~~~d~~~~~~L~~~~--~~pia~dEs~~~~~~~~~~~~~-~~~d 252 (352)
T cd03325 186 RVS--KPMAKDLAKELEPYRLLFI-------EEPV-LPENVEALAEIAART--TIPIATGERLFSRWDFKELLED-GAVD 252 (352)
T ss_pred CCC--HHHHHHHHHhccccCCcEE-------ECCC-CccCHHHHHHHHHhC--CCCEEecccccCHHHHHHHHHh-CCCC
Confidence 673 5789999999999888877 3433 345789999999988 6999887778999999998875 6788
Q ss_pred eeeec
Q 009196 401 SCMIA 405 (540)
Q Consensus 401 gVMIG 405 (540)
.|++-
T Consensus 253 ~v~~d 257 (352)
T cd03325 253 IIQPD 257 (352)
T ss_pred EEecC
Confidence 88764
No 263
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.53 E-value=0.073 Score=54.12 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++|+.++++|+++|.|- |....+. -+++++..+++.+ ++||+..+-|.++.++.+... .|||+|.+==
T Consensus 61 ~d~~~~A~~y~~~GA~aISVl--Te~~~F~--Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~--~GADavLLI~ 132 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVL--TDQSYFG--GSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARA--FGASAILLIV 132 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEE--cCCCcCC--CCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHH--cCCCEEEeEH
Confidence 467899999999999999885 3233343 3689999999998 799999999999999999886 7999997765
Q ss_pred HHHh
Q 009196 407 GALI 410 (540)
Q Consensus 407 gaL~ 410 (540)
++|.
T Consensus 133 ~~L~ 136 (247)
T PRK13957 133 RILT 136 (247)
T ss_pred hhCC
Confidence 5554
No 264
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.47 E-value=0.32 Score=53.00 Aligned_cols=127 Identities=6% Similarity=-0.011 Sum_probs=93.4
Q ss_pred CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecCCCCCChh
Q 009196 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGYFEGKN 327 (540)
Q Consensus 250 G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~G~~e~~~ 327 (540)
+.+++.+.+-|+.+. ..||..+-|..| .+++.-.+.|+++|++++ +.+.|-.-.+|+ ..
T Consensus 194 ~~~~~~~~~~a~~~~-~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~--~~ 254 (415)
T cd03324 194 GYSDEKLRRLCKEAL-AQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWD--VP 254 (415)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC--HH
Confidence 456777776666655 459999998654 245566778889998873 556665555663 57
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
++.++++.|++.++.+| +|.. .+.+++..+++++.++ .++||.+.=.+.+..++..++.. ..+|.+++
T Consensus 255 ~A~~~~~~L~~~~l~~i-------EEP~-~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-~a~dil~~ 323 (415)
T cd03324 255 EAIEWVKQLAEFKPWWI-------EEPT-SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-GAIDVVQI 323 (415)
T ss_pred HHHHHHHHhhccCCCEE-------ECCC-CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-CCCCEEEe
Confidence 89999999999998876 3443 3457888888988761 03899887789999999998875 67888864
No 265
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.44 E-value=0.46 Score=49.52 Aligned_cols=131 Identities=21% Similarity=0.183 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhH
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 328 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~ 328 (540)
-|.+.+.+.++.+. ..|+|+|=++. ..|-...-..+.-.++++.+++++ .+||.+-+-. .+..+
T Consensus 22 vD~~a~~~lv~~li-~~Gv~gi~~~G----------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~---~~t~e 87 (299)
T COG0329 22 VDEEALRRLVEFLI-AAGVDGLVVLG----------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS---NSTAE 87 (299)
T ss_pred cCHHHHHHHHHHHH-HcCCCEEEECC----------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC---CcHHH
Confidence 46778888888887 67999998863 222223334455556677777766 4788885543 34678
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCCc---CHHHHHHHHHHcCCCceEE-Ee-----CCCCCHHHHHHHHhcCCCc
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKLA---DWDYIYQCARKASDDLQVL-GN-----GDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~a---dw~~I~~i~~~~~~~IPVI-gN-----GdI~s~eDa~~~l~~~~ga 399 (540)
+.++++.+++.|+|+|.+..- .|.++. -+++++.|.+++ ++||| .| |--.+++.+.++-. ...+
T Consensus 88 ai~lak~a~~~Gad~il~v~P----yY~k~~~~gl~~hf~~ia~a~--~lPvilYN~P~~tg~~l~~e~i~~la~-~~ni 160 (299)
T COG0329 88 AIELAKHAEKLGADGILVVPP----YYNKPSQEGLYAHFKAIAEAV--DLPVILYNIPSRTGVDLSPETIARLAE-HPNI 160 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeCC----CCcCCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCCCCHHHHHHHhc-CCCE
Confidence 999999999999999998642 233332 356788888888 68765 55 55567888777544 3455
Q ss_pred Cee
Q 009196 400 ASC 402 (540)
Q Consensus 400 DgV 402 (540)
-||
T Consensus 161 vgi 163 (299)
T COG0329 161 VGV 163 (299)
T ss_pred EEE
Confidence 454
No 266
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=95.43 E-value=0.25 Score=52.59 Aligned_cols=124 Identities=8% Similarity=0.102 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~G~~e~~~~~ 329 (540)
.++.+..+++.+. +.||+.+-|..||+-.. .-.+.|+++|++++ +.|.|-.--+|+ ...+
T Consensus 143 ~~e~~~~~~~~~~-~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~--~~~A 204 (372)
T COG4948 143 PEEMAAEAARALV-ELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWT--LEEA 204 (372)
T ss_pred CHHHHHHHHHHHH-hcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcC--HHHH
Confidence 5677777777776 57999999999988532 55577888888884 566666666774 4578
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
..+++.+++.++.+| +|.. .+-|.+..+++++.+ ++||.+.=-+.+..|+.++++. ..+|.|++
T Consensus 205 ~~~~~~l~~~~l~~i-------EeP~-~~~d~~~~~~l~~~~--~~PIa~gEs~~~~~~~~~l~~~-~a~div~~ 268 (372)
T COG4948 205 IRLARALEEYGLEWI-------EEPL-PPDDLEGLRELRAAT--STPIAAGESVYTRWDFRRLLEA-GAVDIVQP 268 (372)
T ss_pred HHHHHHhcccCcceE-------ECCC-CccCHHHHHHHHhcC--CCCEecCcccccHHHHHHHHHc-CCCCeecC
Confidence 899999999997766 3332 335788889999987 5999999999999999998885 56888875
No 267
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.43 E-value=0.17 Score=52.59 Aligned_cols=151 Identities=11% Similarity=0.074 Sum_probs=87.0
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccc-cccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHH
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGS-CLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT 338 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~Gs-aLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~lee 338 (540)
|++++ .+||++|=+-..+ +... -|+== .++ ....+.+.++.|..++++||+|-+-.|+-+ ..++...++.+.+
T Consensus 26 Ari~e-~aGf~Ai~~sg~~-~a~~--lG~pD~g~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~-~~~v~~tv~~~~~ 99 (285)
T TIGR02317 26 ALLAE-RAGFEAIYLSGAA-VAAS--LGLPDLGIT-TLDEVAEDARRITRVTDLPLLVDADTGFGE-AFNVARTVREMED 99 (285)
T ss_pred HHHHH-HcCCCEEEEcHHH-HHHh--CCCCCCCCC-CHHHHHHHHHHHHhccCCCEEEECCCCCCC-HHHHHHHHHHHHH
Confidence 34444 7899999875322 1111 11100 122 455667778888888899999999999865 6777889999999
Q ss_pred cCCcEEEEecccc--cCcc-CCC--cC-HHHHHHH---HHHcCCCceEEEeC--CCCC---HHHHHHHH---hcCCCcCe
Q 009196 339 WGASAVTVHGRTR--QQRY-SKL--AD-WDYIYQC---ARKASDDLQVLGNG--DIYS---YLDWNKHK---SDCPELAS 401 (540)
Q Consensus 339 aGvdaItVHgRtr--~q~y-~g~--ad-w~~I~~i---~~~~~~~IPVIgNG--dI~s---~eDa~~~l---~~~~gaDg 401 (540)
+||.+|+|-..+. ..++ .+. .. -+++.+| ++... +.+++.|. |.+. .+++.+-. .+ .|||+
T Consensus 100 aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~-~~d~~IiARTDa~~~~g~deAI~Ra~ay~~-AGAD~ 177 (285)
T TIGR02317 100 AGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR-DEDFVIIARTDARAVEGLDAAIERAKAYVE-AGADM 177 (285)
T ss_pred cCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc-CCCEEEEEEcCcccccCHHHHHHHHHHHHH-cCCCE
Confidence 9999999965431 1111 111 11 1344444 33332 34455444 4333 44444321 13 79999
Q ss_pred eeecHHHHhCCCchHHHHh
Q 009196 402 CMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 402 VMIGRgaL~nPwif~eik~ 420 (540)
|++- | +.++.-.+++.+
T Consensus 178 vfi~-g-~~~~e~i~~~~~ 194 (285)
T TIGR02317 178 IFPE-A-LTSLEEFRQFAK 194 (285)
T ss_pred EEeC-C-CCCHHHHHHHHH
Confidence 9984 2 344444444443
No 268
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.08 Score=56.96 Aligned_cols=120 Identities=20% Similarity=0.226 Sum_probs=80.1
Q ss_pred HHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 261 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 261 ~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
.++. ++|+|.|=|.. .+| +...-.++++.+++.. ...|.. | .-.+.+-++.|-.+
T Consensus 257 ~ll~-~aGvdvviLDS--------SqG-------nS~~qiemik~iK~~yP~l~Via----G----NVVT~~qa~nLI~a 312 (503)
T KOG2550|consen 257 DLLV-QAGVDVVILDS--------SQG-------NSIYQLEMIKYIKETYPDLQIIA----G----NVVTKEQAANLIAA 312 (503)
T ss_pred HHhh-hcCCcEEEEec--------CCC-------cchhHHHHHHHHHhhCCCceeec----c----ceeeHHHHHHHHHc
Confidence 3444 68999987752 122 2345668899998876 444443 1 11234567788899
Q ss_pred CCcEEEEecc------cccC----ccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 340 GASAVTVHGR------TRQQ----RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 340 GvdaItVHgR------tr~q----~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
|||.|.|--. |++- +..+.|-++ +.+++... .+|||+.|||.+.-++.++|. .||+.||+| ++|
T Consensus 313 GaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~-va~~A~q~--gvpviADGGiq~~Ghi~KAl~--lGAstVMmG-~lL 386 (503)
T KOG2550|consen 313 GADGLRVGMGSGSICITQKVMACGRPQGTAVYK-VAEFANQF--GVPCIADGGIQNVGHVVKALG--LGASTVMMG-GLL 386 (503)
T ss_pred cCceeEeccccCceeeeceeeeccCCcccchhh-HHHHHHhc--CCceeecCCcCccchhHhhhh--cCchhheec-cee
Confidence 9999988432 2222 222333333 34555566 699999999999999999997 799999999 444
Q ss_pred h
Q 009196 410 I 410 (540)
Q Consensus 410 ~ 410 (540)
.
T Consensus 387 A 387 (503)
T KOG2550|consen 387 A 387 (503)
T ss_pred e
Confidence 3
No 269
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.37 E-value=2.8 Score=43.03 Aligned_cols=149 Identities=12% Similarity=0.060 Sum_probs=93.8
Q ss_pred cCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 239 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 239 ~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
....|+++++.+.+.++..+.|+.++ .+|+|+|-|- -|.-. .-..+-+.+-.+.|.+++++|+.+=-
T Consensus 68 ~~~~~vi~gv~~~st~~~i~~a~~a~-~~Gad~v~v~--~P~~~----------~~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 68 AGRVPVIAGVGANSTEEAIELARHAQ-DAGADAVLVI--PPYYF----------KPSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp TTSSEEEEEEESSSHHHHHHHHHHHH-HTT-SEEEEE--ESTSS----------SCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred cCceEEEecCcchhHHHHHHHHHHHh-hcCceEEEEe--ccccc----------cchhhHHHHHHHHHHhhcCCCEEEEE
Confidence 44579999999999999999999987 7899999984 35322 12456677788888888899999854
Q ss_pred cC---CCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 009196 319 RT---GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 395 (540)
Q Consensus 319 R~---G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 395 (540)
.. |.. -..+++.+|.+.+ ..+-+. + ...++..+.++......++. +.+| +-+.+...+.
T Consensus 135 ~P~~tg~~----ls~~~l~~L~~~~-nv~giK-------~-s~~~~~~~~~~~~~~~~~~~-v~~G---~d~~~~~~l~- 196 (289)
T PF00701_consen 135 NPARTGND----LSPETLARLAKIP-NVVGIK-------D-SSGDLERLIQLLRAVGPDFS-VFCG---DDELLLPALA- 196 (289)
T ss_dssp BHHHHSST----SHHHHHHHHHTST-TEEEEE-------E-SSSBHHHHHHHHHHSSTTSE-EEES---SGGGHHHHHH-
T ss_pred CCCccccC----CCHHHHHHHhcCC-cEEEEE-------c-CchhHHHHHHHhhhcccCee-eecc---cccccccccc-
Confidence 33 332 2334445555421 222221 1 12456666677666554555 4466 2222445555
Q ss_pred CCCcCeeeecHHHHhCCCchHHHHh
Q 009196 396 CPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 396 ~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
.|++|++.|-+.+ -|+++.++-+
T Consensus 197 -~G~~G~is~~~n~-~P~~~~~i~~ 219 (289)
T PF00701_consen 197 -AGADGFISGLANV-FPELIVEIYD 219 (289)
T ss_dssp -TTSSEEEESGGGT-HHHHHHHHHH
T ss_pred -ccCCEEEEccccc-ChHHHHHHHH
Confidence 6999999997665 4666666543
No 270
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.36 E-value=0.083 Score=53.42 Aligned_cols=133 Identities=15% Similarity=0.265 Sum_probs=78.6
Q ss_pred HHHHHHHhCCCCEEEecC-------CCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHH
Q 009196 259 TVELIDQQCTVDFIDINM-------GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDS 331 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~-------GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~ 331 (540)
.|++++ .+||++|=+-. |-| |+ .+ -....+.+.++.|..++++||+|-+..|+-++..++.+
T Consensus 21 SAr~~e-~~Gf~ai~~sg~~~a~s~G~p------D~---~~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~ 89 (238)
T PF13714_consen 21 SARLAE-RAGFDAIATSGAGVAASLGYP------DG---GL-LTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVAR 89 (238)
T ss_dssp HHHHHH-HTT-SEEEEHHHHHHHHTTS-------SS---S--S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHH
T ss_pred HHHHHH-HcCCCEEEechHHHHHHcCCC------CC---CC-CCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHH
Confidence 445555 78999987642 223 11 11 23455667888888888999999999999766788999
Q ss_pred HHHHHHHcCCcEEEEecccccCccCC--CcC-HHHHHHH---HHHcC-CCceEEEeCCCCC--HHHHHHHHh------cC
Q 009196 332 LIADIGTWGASAVTVHGRTRQQRYSK--LAD-WDYIYQC---ARKAS-DDLQVLGNGDIYS--YLDWNKHKS------DC 396 (540)
Q Consensus 332 la~~leeaGvdaItVHgRtr~q~y~g--~ad-w~~I~~i---~~~~~-~~IPVIgNGdI~s--~eDa~~~l~------~~ 396 (540)
.++.+.++|+.+|+|-.. +.. +.+ ... =+++.+| ++... .++-|++==|.+. .+...+.++ +
T Consensus 90 tv~~~~~aG~agi~IEDq-~~~-~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~e- 166 (238)
T PF13714_consen 90 TVRELERAGAAGINIEDQ-RCG-HGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAE- 166 (238)
T ss_dssp HHHHHHHCT-SEEEEESB-STT-TSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCcEEEeecc-ccC-CCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHH-
Confidence 999999999999999654 111 111 111 1334444 43332 1466666666643 333333332 3
Q ss_pred CCcCeeeec
Q 009196 397 PELASCMIA 405 (540)
Q Consensus 397 ~gaDgVMIG 405 (540)
.|||+|++=
T Consensus 167 AGAD~ifi~ 175 (238)
T PF13714_consen 167 AGADMIFIP 175 (238)
T ss_dssp TT-SEEEET
T ss_pred cCCCEEEeC
Confidence 799999874
No 271
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=95.36 E-value=0.14 Score=54.18 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=71.8
Q ss_pred CccccccCCchHHHHHHHHhcc-cccccEEEEecCCCCCC-hhHHHHHHHHHHHcCCcEEEEecccccC--ccCCCcCH-
Q 009196 287 GAGSCLLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEG-KNRIDSLIADIGTWGASAVTVHGRTRQQ--RYSKLADW- 361 (540)
Q Consensus 287 G~GsaLl~~p~~l~eIv~av~~-~v~iPVtVKiR~G~~e~-~~~~~~la~~leeaGvdaItVHgRtr~q--~y~g~adw- 361 (540)
|.+++.+.+|+..... +.+++ ..++|+.+-+-. ... .....++.+.++..+++++.+|--..+. ...+..++
T Consensus 89 Gs~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~--~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~ 165 (333)
T TIGR02151 89 GSQRAALKDPETADTF-EVVREEAPNGPLIANIGA--PQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFK 165 (333)
T ss_pred cCchhhccChhhHhHH-HHHHHhCCCCcEEeecCc--hhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHH
Confidence 4455556788876665 67777 568999885432 111 1113445555666678999888632211 22233344
Q ss_pred ---HHHHHHHHHcCCCceEEE--eCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 362 ---DYIYQCARKASDDLQVLG--NGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 362 ---~~I~~i~~~~~~~IPVIg--NGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+.++.+++.+ ++||+. +|.-.+.+.+..+ .+ .|+|+|-|+
T Consensus 166 ~~le~i~~i~~~~--~vPVivK~~g~g~~~~~a~~L-~~-aGvd~I~Vs 210 (333)
T TIGR02151 166 GWLEKIAEICSQL--SVPVIVKEVGFGISKEVAKLL-AD-AGVSAIDVA 210 (333)
T ss_pred HHHHHHHHHHHhc--CCCEEEEecCCCCCHHHHHHH-HH-cCCCEEEEC
Confidence 6788888888 699986 5666788888774 44 799999875
No 272
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.34 E-value=0.23 Score=50.88 Aligned_cols=134 Identities=17% Similarity=0.105 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. ..|+++|=+|. ..|-...-..+.-.++++.+++.+ .+||.+-+.. .+..++
T Consensus 19 D~~~~~~~i~~l~-~~Gv~gl~v~G----------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~---~~~~~~ 84 (284)
T cd00950 19 DFDALERLIEFQI-ENGTDGLVVCG----------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS---NNTAEA 84 (284)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECC----------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC---ccHHHH
Confidence 5677888888877 67999999873 122222233344445555555554 4688775443 245789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
.++++.++++|+++|.+..=.- ...+...-++|.++|.+.+ ++||+ ..|-..|++.+.++.+. ..+-|+=
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~-~~~~~~~l~~~~~~ia~~~--~~pi~lYn~P~~~g~~ls~~~~~~L~~~-p~v~giK 160 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYY-NKPSQEGLYAHFKAIAEAT--DLPVILYNVPGRTGVNIEPETVLRLAEH-PNIVGIK 160 (284)
T ss_pred HHHHHHHHHcCCCEEEEccccc-CCCCHHHHHHHHHHHHhcC--CCCEEEEEChhHhCCCCCHHHHHHHhcC-CCEEEEE
Confidence 9999999999999998863210 0111122367888888876 68877 24666788888876643 5555543
No 273
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.32 E-value=0.36 Score=52.10 Aligned_cols=124 Identities=10% Similarity=0.072 Sum_probs=92.6
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
+++.+.+.|+.+. +.||..+-|..| + .+++.-.+.|+++++++ ++.+.|-.-.+| +..++
T Consensus 160 ~~~~~~~~a~~~~-~~Gf~~~Kikvg-----------~----~~~~~di~~v~avRe~~G~~~~l~vDaN~~w--~~~~A 221 (385)
T cd03326 160 DLGRLRDEMRRYL-DRGYTVVKIKIG-----------G----APLDEDLRRIEAALDVLGDGARLAVDANGRF--DLETA 221 (385)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEeCC-----------C----CCHHHHHHHHHHHHHhcCCCCeEEEECCCCC--CHHHH
Confidence 5677766666554 469999999654 0 23455567888888887 456777666677 35789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc----Ceeee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL----ASCMI 404 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga----DgVMI 404 (540)
.++++.|++.++.+| +|.. .+.+++..+++++.+ ++||.+.=.+.+..++..++.. ..+ |.|++
T Consensus 222 ~~~~~~l~~~~~~~i-------EeP~-~~~d~~~~~~L~~~~--~iPIa~gEs~~~~~~~~~li~~-~a~~~~~div~~ 289 (385)
T cd03326 222 IAYAKALAPYGLRWY-------EEPG-DPLDYALQAELADHY--DGPIATGENLFSLQDARNLLRY-GGMRPDRDVLQF 289 (385)
T ss_pred HHHHHHhhCcCCCEE-------ECCC-CccCHHHHHHHHhhC--CCCEEcCCCcCCHHHHHHHHHh-CCccccCCEEEe
Confidence 999999999988877 3433 345788899999988 7999998899999999998874 444 77654
No 274
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.32 E-value=0.71 Score=48.00 Aligned_cols=119 Identities=11% Similarity=0.063 Sum_probs=76.5
Q ss_pred CCccccccCCchHHHHHHHHhcccccccEEEEec-CC-CCCC---------hhHHHHHHHHHHHcCCcEEEEecccccCc
Q 009196 286 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR-TG-YFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQR 354 (540)
Q Consensus 286 ~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G-~~e~---------~~~~~~la~~leeaGvdaItVHgRtr~q~ 354 (540)
||.--.+..|-+...++++..+. .++.|-.-+- +| -.+. -.+..+..+.+++.|+|++.|.-.|..+.
T Consensus 104 DgS~l~~eeNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK09195 104 DGSHLPFAQNISLVKEVVDFCHR-FDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGM 182 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccc
Confidence 44444455666777777776654 2444443331 22 1111 11334445556689999998877776677
Q ss_pred cCCC--cCHHHHHHHHHHcCCCceEEEeCCCCCH-HHHHHHHhcCCCcCeeeecHHHH
Q 009196 355 YSKL--ADWDYIYQCARKASDDLQVLGNGDIYSY-LDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 355 y~g~--adw~~I~~i~~~~~~~IPVIgNGdI~s~-eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
|.+. -||+.+++|++.+ ++|++.-|+=-.+ +++.+++. .|+.=|=|++.+.
T Consensus 183 y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~--~Gi~KiNi~T~l~ 236 (284)
T PRK09195 183 YKGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIK--LGICKVNVATELK 236 (284)
T ss_pred cCCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHH--cCCeEEEeCcHHH
Confidence 7553 5799999999998 7999988865554 55556655 6888888887765
No 275
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.31 E-value=0.086 Score=51.83 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
..+..++|+.++++|+++|++..- ...+. ...+.+..+++.+ ++||+.-|.|.+.+.+..+++ .|||+|.++
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~--~~~~~--g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~--~Gad~v~l~ 101 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTE--PKYFQ--GSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARA--AGADAVLLI 101 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeC--ccccC--CCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHH--cCCCEEEEe
Confidence 356889999999999999988643 22222 2456788888877 799999888999988888776 799999987
Q ss_pred HHHHh
Q 009196 406 RGALI 410 (540)
Q Consensus 406 RgaL~ 410 (540)
-..+.
T Consensus 102 ~~~~~ 106 (217)
T cd00331 102 VAALD 106 (217)
T ss_pred eccCC
Confidence 66553
No 276
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.31 E-value=0.17 Score=52.43 Aligned_cols=152 Identities=12% Similarity=0.070 Sum_probs=91.7
Q ss_pred HHHHHHHhCCCCEEEecCC-CCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHH
Q 009196 259 TVELIDQQCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 337 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~G-CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~le 337 (540)
.|.+++ ++||.+|=+-.+ +-...-..|+. .-..+.+...++.|..++++||+|-+-.||-+ ..++.+.++.++
T Consensus 30 sA~la~-~aGF~al~~sg~~vA~slG~pD~~----~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nvartV~~~~ 103 (289)
T COG2513 30 SALLAE-RAGFKALYLSGAGVAASLGLPDLG----ITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNVARTVRELE 103 (289)
T ss_pred HHHHHH-HcCCeEEEeccHHHHHhcCCCccc----cccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHHHHHHHHHH
Confidence 344454 789999988521 11111111221 11256677788888889999999999999976 678888999999
Q ss_pred HcCCcEEEEecccc---------cCccCCCcCHHHHHHHHHHcCCCceEEEeCCCC-----CHHHHH----HHHhcCCCc
Q 009196 338 TWGASAVTVHGRTR---------QQRYSKLADWDYIYQCARKASDDLQVLGNGDIY-----SYLDWN----KHKSDCPEL 399 (540)
Q Consensus 338 eaGvdaItVHgRtr---------~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~-----s~eDa~----~~l~~~~ga 399 (540)
++|+.+|+|-.-.. ++-+......+.|+.+++..+ +.+++.+.... ..+++. .+.+ .||
T Consensus 104 ~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~-~~~fvi~ARTda~~~~~ld~AI~Ra~AY~e--AGA 180 (289)
T COG2513 104 QAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARR-DPDFVIIARTDALLVEGLDDAIERAQAYVE--AGA 180 (289)
T ss_pred HcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhcc-CCCeEEEeehHHHHhccHHHHHHHHHHHHH--cCC
Confidence 99999999854321 111111112345555555553 24444433221 134443 3333 799
Q ss_pred CeeeecHHHHhCCCchHHHHhc
Q 009196 400 ASCMIARGALIKPWIFTEIKEQ 421 (540)
Q Consensus 400 DgVMIGRgaL~nPwif~eik~~ 421 (540)
|+|.. .++.++.-|+++.+.
T Consensus 181 D~if~--~al~~~e~i~~f~~a 200 (289)
T COG2513 181 DAIFP--EALTDLEEIRAFAEA 200 (289)
T ss_pred cEEcc--ccCCCHHHHHHHHHh
Confidence 98865 456667777766654
No 277
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.30 E-value=0.18 Score=52.42 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=89.0
Q ss_pred HHHHHHHhCCCCEEEecCCCCC-cccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHH
Q 009196 259 TVELIDQQCTVDFIDINMGCPI-DIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 337 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~GCP~-~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~le 337 (540)
.|++++ ++||++|=+-..+=. ..-.-|+ .+ -..+.+.+.++.|..++++||+|-+-.|+-+.. ++...++.++
T Consensus 27 SAri~e-~aGf~ai~~ss~~va~slG~pD~---g~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~-~v~~tV~~~~ 100 (290)
T TIGR02321 27 VAKLAE-QAGFGGIWGSGFELSASYAVPDA---NI-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV-NVHYVVPQYE 100 (290)
T ss_pred HHHHHH-HcCCCEEEECHHHHHHHCCCCCc---cc-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH-HHHHHHHHHH
Confidence 344555 789999877422100 0000111 12 245667778888888899999999999987655 6788899999
Q ss_pred HcCCcEEEEecccccCc--c--CC---CcCH-HHHHHHH---HHcCCCceEEEeC--CCC----CHHHHHHHH---hcCC
Q 009196 338 TWGASAVTVHGRTRQQR--Y--SK---LADW-DYIYQCA---RKASDDLQVLGNG--DIY----SYLDWNKHK---SDCP 397 (540)
Q Consensus 338 eaGvdaItVHgRtr~q~--y--~g---~adw-~~I~~i~---~~~~~~IPVIgNG--dI~----s~eDa~~~l---~~~~ 397 (540)
++||.+|+|-......+ + .+ ..+. +++.+|+ +... +.+++.|- |.+ ..+++.+-. .+ .
T Consensus 101 ~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~-~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~e-A 178 (290)
T TIGR02321 101 AAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARA-DRDFVVIARVEALIAGLGQQEAVRRGQAYEE-A 178 (290)
T ss_pred HcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCC-CCCEEEEEEeccccccCCHHHHHHHHHHHHH-c
Confidence 99999999965331111 1 11 1222 3344444 3221 33444444 433 234444321 23 8
Q ss_pred CcCeeeecHHHHhCCCchHHHHh
Q 009196 398 ELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 398 gaDgVMIGRgaL~nPwif~eik~ 420 (540)
|||+|+|- |.+.+|.-+.++-+
T Consensus 179 GAD~ifv~-~~~~~~~ei~~~~~ 200 (290)
T TIGR02321 179 GADAILIH-SRQKTPDEILAFVK 200 (290)
T ss_pred CCCEEEec-CCCCCHHHHHHHHH
Confidence 99999993 33466666666554
No 278
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.29 E-value=0.34 Score=50.65 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. ..|+++|=+|. ..|-...-..+.-.++++.+++.+ ++||.+-+-. .+..++
T Consensus 27 D~~~l~~lv~~li-~~Gv~Gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~---~~t~~a 92 (309)
T cd00952 27 DLDETARLVERLI-AAGVDGILTMG----------TFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT---LNTRDT 92 (309)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECc----------ccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc---CCHHHH
Confidence 5677888888877 57999998873 223333334444456666665555 5888886543 245789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEEE------eCCCCCHHHHHHHH
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLG------NGDIYSYLDWNKHK 393 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVIg------NGdI~s~eDa~~~l 393 (540)
+++++.++++|+|++.+.. ..|..+ .-.+|.+.|.+.++ ++||+. .|--.+++.+.++.
T Consensus 93 i~~a~~A~~~Gad~vlv~~----P~y~~~~~~~l~~yf~~va~a~~-~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 93 IARTRALLDLGADGTMLGR----PMWLPLDVDTAVQFYRDVAEAVP-EMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHHHHHHhCCCEEEECC----CcCCCCCHHHHHHHHHHHHHhCC-CCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 9999999999999999863 123222 23677888888773 377662 23333566666643
No 279
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.29 E-value=0.28 Score=50.85 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. +.|+|+|=++. ..|-...-..+.-.++++.+++.+ .+||.+-+ |. ...++
T Consensus 24 D~~~l~~li~~l~-~~Gv~gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~~--~t~~a 88 (296)
T TIGR03249 24 DEAAYRENIEWLL-GYGLEALFAAG----------GTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--GG--NTSDA 88 (296)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECC----------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--Cc--cHHHH
Confidence 5678888888887 57999998873 122222223333345555554444 47888865 42 46789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEE-Ee--CCCCCHHHHHHHHhcCCCcCeee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVL-GN--GDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVI-gN--GdI~s~eDa~~~l~~~~gaDgVM 403 (540)
+++++.++++|+|++.+.. ..|..+ .-.+|...|.+++ ++||| .| |--.+++.+.++..+++++-||=
T Consensus 89 i~~a~~a~~~Gadav~~~p----P~y~~~s~~~i~~~f~~v~~a~--~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiK 162 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLP----PYLINGEQEGLYAHVEAVCEST--DLGVIVYQRDNAVLNADTLERLADRCPNLVGFK 162 (296)
T ss_pred HHHHHHHHHhCCCEEEECC----CCCCCCCHHHHHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEE
Confidence 9999999999999998854 223222 2367888888887 58865 43 33447888887654345655553
No 280
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.26 E-value=0.47 Score=48.44 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=71.2
Q ss_pred cccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEE-Ee-cccccCccCC-CcCHHHHH
Q 009196 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT-VH-GRTRQQRYSK-LADWDYIY 365 (540)
Q Consensus 289 GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaIt-VH-gRtr~q~y~g-~adw~~I~ 365 (540)
||.++.+.+++..+- .+++||.+|.-.. .+..+....+..+.+.|..-|. +| |-+....+.. ..|+..+.
T Consensus 105 gs~~~~n~~LL~~va-----~tgkPVilk~G~~--~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~ 177 (250)
T PRK13397 105 GARNMQNFEFLKTLS-----HIDKPILFKRGLM--ATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVP 177 (250)
T ss_pred CcccccCHHHHHHHH-----ccCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHH
Confidence 777888877655543 2489999987633 3567888888999999996555 45 3222222222 56788889
Q ss_pred HHHHHcCCCceEEEe----CCCCC--HHHHHHHHhcCCCcCeeeec
Q 009196 366 QCARKASDDLQVLGN----GDIYS--YLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 366 ~i~~~~~~~IPVIgN----GdI~s--~eDa~~~l~~~~gaDgVMIG 405 (540)
.+++.. ++|||.. +|.+. +.-+..++. .||||+||=
T Consensus 178 ~lk~~~--~lPVivd~SHs~G~r~~v~~~a~AAvA--~GAdGl~IE 219 (250)
T PRK13397 178 IIQQKT--DLPIIVDVSHSTGRRDLLLPAAKIAKA--VGANGIMME 219 (250)
T ss_pred HHHHHh--CCCeEECCCCCCcccchHHHHHHHHHH--hCCCEEEEE
Confidence 999877 6999875 44433 233445554 799999986
No 281
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.23 E-value=0.42 Score=51.27 Aligned_cols=114 Identities=13% Similarity=0.069 Sum_probs=76.7
Q ss_pred cccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEE-EEe-cccccCcc-CCCcCHHHHH
Q 009196 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAV-TVH-GRTRQQRY-SKLADWDYIY 365 (540)
Q Consensus 289 GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaI-tVH-gRtr~q~y-~g~adw~~I~ 365 (540)
||..+.+..++..+- .+++||.+|.-++ .+.++....+..+.+.|..-| .+| |-+....+ ....||..+.
T Consensus 208 ~s~~~~n~~LL~~~a-----~~gkPVilk~G~~--~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~ 280 (360)
T PRK12595 208 GARNMQNFELLKAAG-----RVNKPVLLKRGLS--ATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVP 280 (360)
T ss_pred CcccccCHHHHHHHH-----ccCCcEEEeCCCC--CCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHH
Confidence 778888876655543 3589999987653 355778888888899998545 455 43322211 2336999999
Q ss_pred HHHHHcCCCceEEEeCCCCC----HH--HHHHHHhcCCCcCeeeecHHHHhCCCch
Q 009196 366 QCARKASDDLQVLGNGDIYS----YL--DWNKHKSDCPELASCMIARGALIKPWIF 415 (540)
Q Consensus 366 ~i~~~~~~~IPVIgNGdI~s----~e--Da~~~l~~~~gaDgVMIGRgaL~nPwif 415 (540)
.+++.+ ++||+.+-|=.. .. -+..++. .||||+||=+-. ||...
T Consensus 281 ~lk~~~--~~PV~~d~~Hs~G~r~~~~~~a~aAva--~GAdg~~iE~H~--dp~~a 330 (360)
T PRK12595 281 ILKQET--HLPVMVDVTHSTGRRDLLLPTAKAALA--IGADGVMAEVHP--DPAVA 330 (360)
T ss_pred HHHHHh--CCCEEEeCCCCCcchhhHHHHHHHHHH--cCCCeEEEEecC--CCCCC
Confidence 999987 799999544322 22 3334454 799999998766 66543
No 282
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.21 E-value=0.061 Score=57.33 Aligned_cols=83 Identities=12% Similarity=0.132 Sum_probs=57.0
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
.+.|-...|..+ +..+.++.|.++|+|.|.|..-. .++. .-.+.++.+++..| ++||| .|.|-|++-+..+
T Consensus 96 ~l~V~aavg~~~---~~~er~~~L~~agvD~ivID~a~---g~s~-~~~~~ik~ik~~~~-~~~vi-aGNV~T~e~a~~L 166 (352)
T PF00478_consen 96 RLLVAAAVGTRD---DDFERAEALVEAGVDVIVIDSAH---GHSE-HVIDMIKKIKKKFP-DVPVI-AGNVVTYEGAKDL 166 (352)
T ss_dssp CBCEEEEEESST---CHHHHHHHHHHTT-SEEEEE-SS---TTSH-HHHHHHHHHHHHST-TSEEE-EEEE-SHHHHHHH
T ss_pred cceEEEEecCCH---HHHHHHHHHHHcCCCEEEccccC---ccHH-HHHHHHHHHHHhCC-CceEE-ecccCCHHHHHHH
Confidence 444444555443 34678888999999999995322 1111 12468899999997 79999 4779999999996
Q ss_pred HhcCCCcCeeeecH
Q 009196 393 KSDCPELASCMIAR 406 (540)
Q Consensus 393 l~~~~gaDgVMIGR 406 (540)
+. .|||+|-||=
T Consensus 167 ~~--aGad~vkVGi 178 (352)
T PF00478_consen 167 ID--AGADAVKVGI 178 (352)
T ss_dssp HH--TT-SEEEESS
T ss_pred HH--cCCCEEEEec
Confidence 65 8999998883
No 283
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=95.19 E-value=0.034 Score=55.94 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=46.8
Q ss_pred cCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 339 WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 339 aGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
.|...|-+-..+. .|... . +.+.++++.+. ++|+|..|||+|.+.+.++++ .|||.|.+|..+..+|+
T Consensus 152 ~g~~~iYLEaGSG--a~~~v-~-~~v~~~~~~~~-~~~LivGGGIrs~e~A~~~~~--aGAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 152 LGMPIIYLEAGSG--AYGPV-P-EEVIAAVKKLS-DIPLIVGGGIRSPEQAREMAE--AGADTIVVGNAIEEDPD 219 (230)
T ss_dssp TT-SEEEEE--TT--SSS-H-H-HHHHHHHHHSS-SSEEEEESS--SHHHHHHHHC--TTSSEEEESCHHHHHH-
T ss_pred hCCCEEEEEeCCC--CCCCc-c-HHHHHHHHhcC-CccEEEeCCcCCHHHHHHHHH--CCCCEEEECCEEEEcch
Confidence 6777777755432 23222 1 34455555554 799999999999999999876 79999999999999998
No 284
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=95.15 E-value=0.73 Score=49.09 Aligned_cols=134 Identities=9% Similarity=0.129 Sum_probs=91.2
Q ss_pred CeEEEEecCCcHHHH-HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEe
Q 009196 242 DLFGVQICGAYPDTL-ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKV 318 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~-a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKi 318 (540)
.++-..+...+++.. .++.+.+. ..||..+-|..| . .+++.-.+.|+++++.++ +.+.+-.
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~~KiKvg------------~---~~~~~d~~~v~~~re~~g~~~~l~~Da 194 (368)
T TIGR02534 131 VDVTWTLASGDTDRDIAEAEERIE-EKRHRSFKLKIG------------A---RDPADDVAHVVAIAKALGDRASVRVDV 194 (368)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHH-hcCcceEEEEeC------------C---CCcHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 344444545555544 44444333 469999988543 1 235555677888888773 3444444
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 009196 319 RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 398 (540)
Q Consensus 319 R~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 398 (540)
--+| +..++.++++.|++.++.+| +|.. .+-+|+-.+++++.. ++||.+.-.+.+..++..++.. ..
T Consensus 195 N~~~--~~~~A~~~~~~l~~~~~~~i-------EeP~-~~~d~~~~~~l~~~~--~~pia~dE~~~~~~~~~~~~~~-~~ 261 (368)
T TIGR02534 195 NAAW--DERTALHYLPQLADAGVELI-------EQPT-PAENREALARLTRRF--NVPIMADESVTGPADALAIAKA-SA 261 (368)
T ss_pred CCCC--CHHHHHHHHHHHHhcChhhe-------ECCC-CcccHHHHHHHHHhC--CCCEEeCcccCCHHHHHHHHHh-CC
Confidence 4455 35689999999999887665 3333 234688888999887 6999998889999999998886 77
Q ss_pred cCeeee
Q 009196 399 LASCMI 404 (540)
Q Consensus 399 aDgVMI 404 (540)
+|.|.+
T Consensus 262 ~d~~~~ 267 (368)
T TIGR02534 262 ADVFAL 267 (368)
T ss_pred CCEEEE
Confidence 898865
No 285
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.14 E-value=0.56 Score=48.00 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=73.3
Q ss_pred cccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEE-eccccc--CccCCCcCHHHHH
Q 009196 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-HGRTRQ--QRYSKLADWDYIY 365 (540)
Q Consensus 289 GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItV-HgRtr~--q~y~g~adw~~I~ 365 (540)
||..+.+..++..+- .+++||.+|.-+. .+.++....+..+.+.|..-|.+ |..+.. .......||..+.
T Consensus 115 ~s~~~~n~~LL~~~a-----~~gkPVilk~G~~--~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~ 187 (260)
T TIGR01361 115 GARNMQNFELLKEVG-----KQGKPVLLKRGMG--NTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVP 187 (260)
T ss_pred CcccccCHHHHHHHh-----cCCCcEEEeCCCC--CCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHH
Confidence 777888888655542 3589999987654 34677888889999999966655 532321 2223357899999
Q ss_pred HHHHHcCCCceEEEe----CCCCC--HHHHHHHHhcCCCcCeeeecHH
Q 009196 366 QCARKASDDLQVLGN----GDIYS--YLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 366 ~i~~~~~~~IPVIgN----GdI~s--~eDa~~~l~~~~gaDgVMIGRg 407 (540)
.+++.. ++||+.+ +|..+ +.-+..++. .||||+||=+-
T Consensus 188 ~lk~~~--~~pV~~ds~Hs~G~r~~~~~~~~aAva--~Ga~gl~iE~H 231 (260)
T TIGR01361 188 VLKKET--HLPIIVDPSHAAGRRDLVIPLAKAAIA--AGADGLMIEVH 231 (260)
T ss_pred HHHHhh--CCCEEEcCCCCCCccchHHHHHHHHHH--cCCCEEEEEeC
Confidence 999887 6999993 33211 344445554 79999988743
No 286
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.14 E-value=0.51 Score=48.98 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=94.3
Q ss_pred CCeEEEEecCC-cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec
Q 009196 241 EDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 319 (540)
Q Consensus 241 e~p~~vQL~G~-~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR 319 (540)
..|+.+.|=+. +.+...+|. ++||+.|-+ ||.--.+.++-+...++++.... .+++|-.-+.
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai-----~~GftSVM~-----------DgS~l~~eeNi~~T~~vve~Ah~-~gv~VEaElG 136 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAV-----RAGFTSVMI-----------DGAALPFEENIAFTKEAVDFAKS-YGVPVEAELG 136 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHH-----HcCCCEEEE-----------eCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEec
Confidence 44666665443 333333321 346666655 33322344566677777776654 4666644332
Q ss_pred -C-CCCCC-------hhHHHHHHHHHHHcCCcEEEEecccccCccCCC-cCHHHHHHHHHHcCCCceEEEeCCCCCH-HH
Q 009196 320 -T-GYFEG-------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL-ADWDYIYQCARKASDDLQVLGNGDIYSY-LD 388 (540)
Q Consensus 320 -~-G~~e~-------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~-adw~~I~~i~~~~~~~IPVIgNGdI~s~-eD 388 (540)
+ |..+. -.+..+..+.+++.|+|++.+.-.|..+.|.+| .+++.+++|++.+ ++|++.-|+=-.+ ++
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~ 214 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEI 214 (283)
T ss_pred cCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHH
Confidence 2 21111 124455566678899999988777777777653 4689999999998 7999998887766 55
Q ss_pred HHHHHhcCCCcCeeeecHHHHh
Q 009196 389 WNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 389 a~~~l~~~~gaDgVMIGRgaL~ 410 (540)
+.+++. .|+.-|=|++.+..
T Consensus 215 ~~~ai~--~Gi~KiNi~Tel~~ 234 (283)
T PRK07998 215 LRSFVN--YKVAKVNIASDLRK 234 (283)
T ss_pred HHHHHH--cCCcEEEECHHHHH
Confidence 666665 79999999988753
No 287
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=95.11 E-value=0.52 Score=48.34 Aligned_cols=155 Identities=16% Similarity=0.221 Sum_probs=87.0
Q ss_pred CCCCCCHHHHHHHHHhCCCEEEec-cceechhccCChhhhh-----------hhhcccCCCeEEEEe----cCCcHHHHH
Q 009196 194 LTTVGNLPFRRVCKVLGADVTCGE-MAMCTNLLQGQASEWA-----------LLRRHSSEDLFGVQI----CGAYPDTLA 257 (540)
Q Consensus 194 M~~vtdlpfR~l~~~~Gadl~~TE-mi~a~~l~~g~~~e~~-----------ll~~~~~e~p~~vQL----~G~~p~~~a 257 (540)
|.+.-|.|+-+++.+.|+|++.-. .+.- .+.|..++.. .+++-.....+++-+ +..++++..
T Consensus 20 ~lTaYD~~~A~~~d~agvD~iLVGDSlgm--v~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av 97 (261)
T PF02548_consen 20 MLTAYDYPSARIADEAGVDIILVGDSLGM--VVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAV 97 (261)
T ss_dssp EEE--SHHHHHHHHHTT-SEEEE-TTHHH--HTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHH
T ss_pred EEecccHHHHHHHHHcCCCEEEeCCcHHH--heeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHH
Confidence 446678999999999999987432 2111 1233333221 123333333333322 124567766
Q ss_pred HHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC---------CCC-----
Q 009196 258 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---------GYF----- 323 (540)
Q Consensus 258 ~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~---------G~~----- 323 (540)
+.|.++.+++|+|.|-|-.|. ...++|+++.++ ++||.-=+-+ |+.
T Consensus 98 ~nA~rl~ke~GadaVKlEGg~-------------------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGyr~qGk~ 157 (261)
T PF02548_consen 98 RNAGRLMKEAGADAVKLEGGA-------------------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLGGYRVQGKT 157 (261)
T ss_dssp HHHHHHHHTTT-SEEEEEBSG-------------------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS--CSTS
T ss_pred HHHHHHHHhcCCCEEEeccch-------------------hHHHHHHHHHHC-CCcEEEEecCchhheeccCCceEEecC
Confidence 666666557999999995221 223455555443 8898865532 221
Q ss_pred -CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCC
Q 009196 324 -EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD 382 (540)
Q Consensus 324 -e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGd 382 (540)
+....+++-|+.|+++|+-+|.+-.- --+..+.|.+.+ +||+||-|-
T Consensus 158 ~~~a~~l~~~A~ale~AGaf~ivlE~v----------p~~la~~It~~l--~IPtIGIGa 205 (261)
T PF02548_consen 158 AEEAEKLLEDAKALEEAGAFAIVLECV----------PAELAKAITEAL--SIPTIGIGA 205 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT-SEEEEESB----------BHHHHHHHHHHS--SS-EEEESS
T ss_pred HHHHHHHHHHHHHHHHcCccEEeeecC----------HHHHHHHHHHhC--CCCEEecCC
Confidence 11236777888899999999998532 235678889998 799998884
No 288
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=95.09 E-value=0.5 Score=50.31 Aligned_cols=121 Identities=11% Similarity=0.044 Sum_probs=90.3
Q ss_pred ecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecCCCCCC
Q 009196 248 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGYFEG 325 (540)
Q Consensus 248 L~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~G~~e~ 325 (540)
+.+.+++.+.+.++.+. ..||..|-|.. .+.|++++++++ +.+.|-.-.+|+
T Consensus 122 ~~~~~~~~~~~~a~~~~-~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN~~w~-- 175 (361)
T cd03322 122 ASGRDIPELLEAVERHL-AQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVHHRLT-- 175 (361)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECCCCCC--
Confidence 44566777766665554 45999988842 567888888873 566666666674
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+++..+++.|++.++.+| +|.. .+-+++..+++++.. ++||.+.=.+.++.++..++.. ..+|.+.+-
T Consensus 176 ~~~A~~~~~~l~~~~l~~i-------EeP~-~~~d~~~~~~L~~~~--~~pia~gE~~~~~~~~~~~i~~-~a~di~~~d 244 (361)
T cd03322 176 PNQAARFGKDVEPYRLFWM-------EDPT-PAENQEAFRLIRQHT--ATPLAVGEVFNSIWDWQNLIQE-RLIDYIRTT 244 (361)
T ss_pred HHHHHHHHHHhhhcCCCEE-------ECCC-CcccHHHHHHHHhcC--CCCEEeccCCcCHHHHHHHHHh-CCCCEEecC
Confidence 5689999999999888877 3443 345788899999988 6999887778999999998885 668877643
No 289
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.06 E-value=5.2 Score=41.75 Aligned_cols=206 Identities=15% Similarity=0.116 Sum_probs=121.7
Q ss_pred CCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccce-echhccCCh--hhhh-hh---h--cccCCCeEEEEec---CCcH
Q 009196 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAM-CTNLLQGQA--SEWA-LL---R--RHSSEDLFGVQIC---GAYP 253 (540)
Q Consensus 186 knrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~-a~~l~~g~~--~e~~-ll---~--~~~~e~p~~vQL~---G~~p 253 (540)
.+.++++| ++-|.---+++.+.|.+.++|--.. +..+..-.. -++. ++ + .....-|+++=+= |+.+
T Consensus 13 ~~~~~~~p--g~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~ 90 (290)
T TIGR02321 13 SGRLFTAM--AAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV 90 (290)
T ss_pred CCCCEEec--cccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH
Confidence 45678888 7788777788888898877665432 222221111 1111 11 1 1223567776653 4445
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCC-CCcccccC-CccccccCCchHHHHHHHHhccc-ccccEEEEecCCCC---CChh
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGC-PIDIVVNK-GAGSCLLTKPMRMKGIIEATSGT-VDKPITIKVRTGYF---EGKN 327 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GC-P~~~v~~~-G~GsaLl~~p~~l~eIv~av~~~-v~iPVtVKiR~G~~---e~~~ 327 (540)
.+.+.++.+. ++|+.+|.|-=.. |-. +.. ..|..-+-.++.+.+-|++++++ .+.++.|=-|+... ...+
T Consensus 91 -~v~~tV~~~~-~aGvagi~IEDq~~pk~--cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~d 166 (290)
T TIGR02321 91 -NVHYVVPQYE-AAGASAIVMEDKTFPKD--TSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQ 166 (290)
T ss_pred -HHHHHHHHHH-HcCCeEEEEeCCCCCcc--cccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHH
Confidence 6888888887 7999999996442 221 100 01211123455555555555544 35566666675321 2346
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC---CCCCHHHHHHHHhcCCCcCeeee
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG---DIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG---dI~s~eDa~~~l~~~~gaDgVMI 404 (540)
++++=++...++|+|.|-+++.. .+-+.+.++.+.++.++||+.+. ...+.++..+ + .++..|..
T Consensus 167 eAI~Ra~aY~eAGAD~ifv~~~~--------~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~-l---g~~~~v~~ 234 (290)
T TIGR02321 167 EAVRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAA-L---SKVGIVIY 234 (290)
T ss_pred HHHHHHHHHHHcCCCEEEecCCC--------CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHH-h---cCCcEEEE
Confidence 78888888999999999998631 34567888888875457886543 3445555444 1 23666888
Q ss_pred cHHHH
Q 009196 405 ARGAL 409 (540)
Q Consensus 405 GRgaL 409 (540)
|-.++
T Consensus 235 g~~~~ 239 (290)
T TIGR02321 235 GNHAI 239 (290)
T ss_pred ChHHH
Confidence 84443
No 290
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.05 E-value=0.46 Score=46.95 Aligned_cols=147 Identities=10% Similarity=0.070 Sum_probs=88.7
Q ss_pred CeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc------cCCccccccCCchHHHHHHHHhcccc
Q 009196 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI-----VV------NKGAGSCLLTKPMRMKGIIEATSGTV 310 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~-----v~------~~G~GsaLl~~p~~l~eIv~av~~~v 310 (540)
.+++.=|.+.++++....++.+. +.|+..|||.+--|... .+ .-|.|+ .-+++.+.+.+++
T Consensus 4 ~~vv~Vir~~~~~~a~~ia~al~-~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGT--Vl~~e~a~~ai~a----- 75 (201)
T PRK06015 4 QPVIPVLLIDDVEHAVPLARALA-AGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGT--ILNAKQFEDAAKA----- 75 (201)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEe--CcCHHHHHHHHHc-----
Confidence 35556678899999999999888 78999999998766321 11 113332 2344444443332
Q ss_pred cccEEEEecCCCCCC---------------hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCc
Q 009196 311 DKPITIKVRTGYFEG---------------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL 375 (540)
Q Consensus 311 ~iPVtVKiR~G~~e~---------------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~I 375 (540)
+--+.| ..+++.+ .-+.-++ ..+.++|++.|-+.+-.. ..| -.|++.++.-+| ++
T Consensus 76 GA~Fiv--SP~~~~~vi~~a~~~~i~~iPG~~TptEi-~~A~~~Ga~~vK~FPa~~---~GG---~~yikal~~plp-~~ 145 (201)
T PRK06015 76 GSRFIV--SPGTTQELLAAANDSDVPLLPGAATPSEV-MALREEGYTVLKFFPAEQ---AGG---AAFLKALSSPLA-GT 145 (201)
T ss_pred CCCEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHH-HHHHHCCCCEEEECCchh---hCC---HHHHHHHHhhCC-CC
Confidence 112222 2222210 0011122 234678888888865211 112 478999999888 79
Q ss_pred eEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 376 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 376 PVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
|++..||| +.+.+.+++. .|+..+..|..+.
T Consensus 146 ~l~ptGGV-~~~n~~~~l~--ag~~~~~ggs~l~ 176 (201)
T PRK06015 146 FFCPTGGI-SLKNARDYLS--LPNVVCVGGSWVA 176 (201)
T ss_pred cEEecCCC-CHHHHHHHHh--CCCeEEEEchhhC
Confidence 99999999 6788888887 4455555554443
No 291
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.04 E-value=0.46 Score=49.00 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHHHHhC-CCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhH
Q 009196 252 YPDTLARTVELIDQQC-TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 328 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~a-G~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~ 328 (540)
|.+.+.+-++.+. .. |+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+-. .+..+
T Consensus 19 D~~~~~~~i~~l~-~~~Gv~gi~~~G----------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~---~~~~~ 84 (288)
T cd00954 19 NEDVLRAIVDYLI-EKQGVDGLYVNG----------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS---LNLKE 84 (288)
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC---CCHHH
Confidence 5678888888887 56 999998873 112222222333344555444444 4688874432 24578
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEEE------eCCCCCHHHHHHHHhcCCCc
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLG------NGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVIg------NGdI~s~eDa~~~l~~~~ga 399 (540)
++++++.++++|++++.+..= .|..+ .-++|...|.++++ ++||+. .|--.+++.+.++.+ .+.+
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P----~y~~~~~~~i~~~~~~v~~a~~-~lpi~iYn~P~~tg~~l~~~~~~~L~~-~pni 158 (288)
T cd00954 85 SQELAKHAEELGYDAISAITP----FYYKFSFEEIKDYYREIIAAAA-SLPMIIYHIPALTGVNLTLEQFLELFE-IPNV 158 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCC----CCCCCCHHHHHHHHHHHHHhcC-CCCEEEEeCccccCCCCCHHHHHHHhc-CCCE
Confidence 999999999999999988531 23222 23678888888874 477762 355557777777554 3444
Q ss_pred Cee
Q 009196 400 ASC 402 (540)
Q Consensus 400 DgV 402 (540)
-|+
T Consensus 159 vgi 161 (288)
T cd00954 159 IGV 161 (288)
T ss_pred EEE
Confidence 333
No 292
>PRK14017 galactonate dehydratase; Provisional
Probab=95.03 E-value=0.56 Score=50.33 Aligned_cols=142 Identities=10% Similarity=0.062 Sum_probs=100.8
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecC
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT 320 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~ 320 (540)
++...+.+.+++.+.+.++.+. ..||..+-|..|=+... .++ ..+++.-.+.|+++++.+ ++.+.|-.--
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~-~~Gf~~~KiKv~~~~~~--~~~-----~~~~~~d~~~i~avr~~~g~~~~l~vDaN~ 186 (382)
T PRK14017 115 RVYSWIGGDRPADVAEAARARV-ERGFTAVKMNGTEELQY--IDS-----PRKVDAAVARVAAVREAVGPEIGIGVDFHG 186 (382)
T ss_pred eEeEeCCCCCHHHHHHHHHHHH-HcCCCEEEEcCcCCccc--ccc-----HHHHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 4444455668888876666665 46999999975311100 000 123566678899999887 4566666655
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
+|+ ..++..+++.|++.|+.+| +|.. .+.+++..+++++.. ++||.+.=.+.++.++..+++. ..+|
T Consensus 187 ~w~--~~~A~~~~~~l~~~~~~~i-------EeP~-~~~d~~~~~~L~~~~--~~pIa~dEs~~~~~~~~~li~~-~a~d 253 (382)
T PRK14017 187 RVH--KPMAKVLAKELEPYRPMFI-------EEPV-LPENAEALPEIAAQT--SIPIATGERLFSRWDFKRVLEA-GGVD 253 (382)
T ss_pred CCC--HHHHHHHHHhhcccCCCeE-------ECCC-CcCCHHHHHHHHhcC--CCCEEeCCccCCHHHHHHHHHc-CCCC
Confidence 663 4679999999999888877 3433 345788899999988 6999998889999999998885 6788
Q ss_pred eeeec
Q 009196 401 SCMIA 405 (540)
Q Consensus 401 gVMIG 405 (540)
.|.+-
T Consensus 254 ~v~~d 258 (382)
T PRK14017 254 IIQPD 258 (382)
T ss_pred eEecC
Confidence 88754
No 293
>PRK06852 aldolase; Validated
Probab=95.02 E-value=3.3 Score=43.55 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=66.8
Q ss_pred HHHHHHHhcccccccEEEE--ecCCC-CC--ChhHHHHHHHHHHHcCCcEEEEecccccCccCC---CcCHHHHHHHHHH
Q 009196 299 MKGIIEATSGTVDKPITIK--VRTGY-FE--GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSK---LADWDYIYQCARK 370 (540)
Q Consensus 299 l~eIv~av~~~v~iPVtVK--iR~G~-~e--~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g---~adw~~I~~i~~~ 370 (540)
+.+|++... ..++|+.+= -|-.. .+ +.+.+...++...+.|+|.|-+- |++ ..+-+.++++.+.
T Consensus 156 l~~v~~ea~-~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~-------y~~~~~~g~~e~f~~vv~~ 227 (304)
T PRK06852 156 AAQIIYEAH-KHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVN-------YPKKEGANPAELFKEAVLA 227 (304)
T ss_pred HHHHHHHHH-HhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEec-------CCCcCCCCCHHHHHHHHHh
Confidence 344444443 358998762 23211 11 12345556677789999999763 331 1244677778777
Q ss_pred cCCCceEEEeCCCC-CHHHHHHHHhcC---CCcCeeeecHHHHhCCCc
Q 009196 371 ASDDLQVLGNGDIY-SYLDWNKHKSDC---PELASCMIARGALIKPWI 414 (540)
Q Consensus 371 ~~~~IPVIgNGdI~-s~eDa~~~l~~~---~gaDgVMIGRgaL~nPwi 414 (540)
+. ++||+..||=. +.+++.+++.+. .|+.||++||=....|.-
T Consensus 228 ~g-~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 228 AG-RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLD 274 (304)
T ss_pred CC-CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCc
Confidence 73 58988888766 445555544421 699999999998887543
No 294
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.97 E-value=0.59 Score=48.35 Aligned_cols=130 Identities=9% Similarity=0.139 Sum_probs=78.6
Q ss_pred hCCCCEEEecC-------CCCCcccccCCccccccC-----Cc---hHHHHHHHHhcccccccEEEEecCCCCCChhHHH
Q 009196 266 QCTVDFIDINM-------GCPIDIVVNKGAGSCLLT-----KP---MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 266 ~aG~D~IDIN~-------GCP~~~v~~~G~GsaLl~-----~p---~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~ 330 (540)
..|+.+|.+-. |-|.+.+.+.. .++++ ++ ..+.++.... +..+.||.+=+.- .+.++..
T Consensus 34 ~~g~g~v~~kti~~~~~~g~~~pr~~~~~--~~~~n~~g~~~~g~~~~~~~~~~~~-~~~~~p~i~si~g---~~~~~~~ 107 (301)
T PRK07259 34 LNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAIGLQNPGVDAFIEEELPWL-EEFDTPIIANVAG---STEEEYA 107 (301)
T ss_pred hcCCcEEEeCCCCCCCCCCCCCCcEEecC--CceeecCCCCCcCHHHHHHHHHHHH-hccCCcEEEEecc---CCHHHHH
Confidence 46888888753 34444443322 22333 22 2344444433 3347899987653 2457888
Q ss_pred HHHHHHHHcC-CcEEEEeccccc--C-c--cC--CCcCHHHHHHHHHHcCCCceEEE--eCCCCCHHHHHHHHhcCCCcC
Q 009196 331 SLIADIGTWG-ASAVTVHGRTRQ--Q-R--YS--KLADWDYIYQCARKASDDLQVLG--NGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 331 ~la~~leeaG-vdaItVHgRtr~--q-~--y~--g~adw~~I~~i~~~~~~~IPVIg--NGdI~s~eDa~~~l~~~~gaD 400 (540)
+.|++++++| +|+|.|+.-... . + +. ...-++.++.+++.+ ++||+. +.++.+..++.+.+++ .|+|
T Consensus 108 ~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~~~~a~~l~~-~G~d 184 (301)
T PRK07259 108 EVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTPNVTDIVEIAKAAEE-AGAD 184 (301)
T ss_pred HHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCchhHHHHHHHHHH-cCCC
Confidence 9999999999 999998432111 1 1 11 112256778888877 689886 4455555556666666 8999
Q ss_pred eeee
Q 009196 401 SCMI 404 (540)
Q Consensus 401 gVMI 404 (540)
+|.+
T Consensus 185 ~i~~ 188 (301)
T PRK07259 185 GLSL 188 (301)
T ss_pred EEEE
Confidence 9854
No 295
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.94 E-value=1.3 Score=46.17 Aligned_cols=113 Identities=10% Similarity=-0.006 Sum_probs=75.2
Q ss_pred cccCCchHHHHHHHHhcccccccEEEEec-CCCCCC--------hhHHHHHHHHHHHcCCcEEEEecccccCccCCC--c
Q 009196 291 CLLTKPMRMKGIIEATSGTVDKPITIKVR-TGYFEG--------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL--A 359 (540)
Q Consensus 291 aLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G~~e~--------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~--a 359 (540)
.+..|-+...++++.... .+++|-.-+- +|-.++ -.+..+....+++.|+|++.+.-.|..+.|.+. .
T Consensus 112 p~eeNi~~Trevv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L 190 (285)
T PRK07709 112 PFEENVETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNL 190 (285)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCcc
Confidence 345566677777776653 3555554432 221111 124445555567789999998777777777653 4
Q ss_pred CHHHHHHHHHHcCCCceEEEeCCCCCH-HHHHHHHhcCCCcCeeeecHHH
Q 009196 360 DWDYIYQCARKASDDLQVLGNGDIYSY-LDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 360 dw~~I~~i~~~~~~~IPVIgNGdI~s~-eDa~~~l~~~~gaDgVMIGRga 408 (540)
+|+.+++|++.+ ++|++.-|+=-.+ +++.+++. .|+.=|=|++.+
T Consensus 191 ~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~--~Gi~KiNi~T~l 236 (285)
T PRK07709 191 GFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAIS--LGTSKINVNTEN 236 (285)
T ss_pred CHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHH--cCCeEEEeChHH
Confidence 799999999998 7999999987766 55666665 677777666554
No 296
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.94 E-value=0.65 Score=47.82 Aligned_cols=96 Identities=6% Similarity=0.107 Sum_probs=63.2
Q ss_pred HHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccC-----ccCCCc--CHHHHHHHHHHcCCCc
Q 009196 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ-----RYSKLA--DWDYIYQCARKASDDL 375 (540)
Q Consensus 303 v~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q-----~y~g~a--dw~~I~~i~~~~~~~I 375 (540)
+...+...+.|+.|=++.. +.++..+.|++++++|+|+|.||-.+... .+.... -.+.++.+++.+ ++
T Consensus 81 ~~~~~~~~~~p~ivsi~g~---~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~ 155 (296)
T cd04740 81 LLPWLREFGTPVIASIAGS---TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DV 155 (296)
T ss_pred HHHHhhcCCCcEEEEEecC---CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CC
Confidence 3334344578999877642 45788899999999999999998643211 111111 135677777776 68
Q ss_pred eEE--EeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 376 QVL--GNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 376 PVI--gNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
||+ .+.++.+..++.+.+.+ .|||+|.+
T Consensus 156 Pv~vKl~~~~~~~~~~a~~~~~-~G~d~i~~ 185 (296)
T cd04740 156 PVIVKLTPNVTDIVEIARAAEE-AGADGLTL 185 (296)
T ss_pred CEEEEeCCCchhHHHHHHHHHH-cCCCEEEE
Confidence 888 45566556665665666 89999865
No 297
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.92 E-value=0.45 Score=50.31 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=73.2
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEE-EecCC-CCCChhHHHHHHHHH-
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITI-KVRTG-YFEGKNRIDSLIADI- 336 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtV-KiR~G-~~e~~~~~~~la~~l- 336 (540)
|+++. ++|+|.|=+ |-...++ -.||-+.+--..+.+...+++|++.+..|++| -|--| +..+.+.+.+-|.+|
T Consensus 48 A~i~d-~aGvD~ILV--GDSlgmv-~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~ 123 (332)
T PLN02424 48 AVHVD-SAGIDVCLV--GDSAAMV-VHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRML 123 (332)
T ss_pred HHHHH-HcCCCEEEE--CCcHHHH-hcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 44554 789999876 3222222 24565555567788889999999999999988 88877 444667778878777
Q ss_pred HHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEE
Q 009196 337 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL 378 (540)
Q Consensus 337 eeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVI 378 (540)
.++|+++|-|-|.+ ....+.|+.+.+ . .|||+
T Consensus 124 ~eaGa~aVKlEGg~-------~~~~~~I~~l~~-~--GIPV~ 155 (332)
T PLN02424 124 KEGGMDAVKLEGGS-------PSRVTAAKAIVE-A--GIAVM 155 (332)
T ss_pred HHhCCcEEEECCCc-------HHHHHHHHHHHH-c--CCCEE
Confidence 78999999997643 112345666663 3 69999
No 298
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.92 E-value=0.64 Score=45.80 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=83.6
Q ss_pred CCeEEEEecCC----cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEE
Q 009196 241 EDLFGVQICGA----YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITI 316 (540)
Q Consensus 241 e~p~~vQL~G~----~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtV 316 (540)
+-.+..|+.-. +.....++|+.+. .+|+..+++ ++ + +.++.++..+++||..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~-~~G~~~~~~--~~-----------------~----~~~~~i~~~~~iPil~ 65 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAV-QGGAVGIRA--NG-----------------V----EDIRAIRARVDLPIIG 65 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHH-HCCCeEEEc--CC-----------------H----HHHHHHHHhCCCCEEE
Confidence 33445565532 4567778888776 679988874 11 2 3455555557899875
Q ss_pred EecCCCCCCh---hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH
Q 009196 317 KVRTGYFEGK---NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK 393 (540)
Q Consensus 317 KiR~G~~e~~---~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l 393 (540)
-.|.++++.. ....+.++.+.++|+++|.+...... ...+....++++.+++.. ++|++. ++.|.+++..+.
T Consensus 66 ~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~iiv--~v~t~~ea~~a~ 140 (219)
T cd04729 66 LIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLLMA--DISTLEEALNAA 140 (219)
T ss_pred EEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeEEE--ECCCHHHHHHHH
Confidence 4454442210 01234678899999999888543211 001113356777887765 578876 688999998866
Q ss_pred hcCCCcCeeeec
Q 009196 394 SDCPELASCMIA 405 (540)
Q Consensus 394 ~~~~gaDgVMIG 405 (540)
. .|+|.+.+.
T Consensus 141 ~--~G~d~i~~~ 150 (219)
T cd04729 141 K--LGFDIIGTT 150 (219)
T ss_pred H--cCCCEEEcc
Confidence 5 799998663
No 299
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.92 E-value=0.47 Score=49.23 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. ..|+++|=++.. .|-...-..+.-.++++.+++.+ .+||.+-+-. .+..++
T Consensus 19 D~~~l~~lv~~~~-~~Gv~gi~v~Gs----------tGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~---~~t~~a 84 (294)
T TIGR02313 19 DEEALRELIEFQI-EGGSHAISVGGT----------SGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA---LNHDET 84 (294)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECcc----------CcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc---chHHHH
Confidence 5677888888777 579999988742 22222222222234444443333 4788874432 245788
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEEE------eCCCCCHHHHHHHHhcCCCcC
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLG------NGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVIg------NGdI~s~eDa~~~l~~~~gaD 400 (540)
+++++.+++.|+|++.+.. ..|..+ .-.+|.+.|.++++ ++||+. .|--.+++.+.++.++++++-
T Consensus 85 i~~a~~A~~~Gad~v~v~p----P~y~~~~~~~l~~~f~~ia~a~~-~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~ 159 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIV----PYYNKPNQEALYDHFAEVADAVP-DFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIV 159 (294)
T ss_pred HHHHHHHHHcCCCEEEEcC----ccCCCCCHHHHHHHHHHHHHhcc-CCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEE
Confidence 9999999999999999864 223332 23677888888774 477662 355557777777654345655
Q ss_pred eeeec
Q 009196 401 SCMIA 405 (540)
Q Consensus 401 gVMIG 405 (540)
||=-.
T Consensus 160 giK~s 164 (294)
T TIGR02313 160 GAKES 164 (294)
T ss_pred EEEeC
Confidence 55443
No 300
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.91 E-value=0.58 Score=48.20 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. ..|+++|=+|. ..|-...-..+.-.++++.+++.+ ++||.+-+-. .+..++
T Consensus 20 D~~~l~~~i~~l~-~~Gv~gi~~~G----------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~---~~~~~~ 85 (292)
T PRK03170 20 DFAALRKLVDYLI-ANGTDGLVVVG----------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS---NSTAEA 85 (292)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECC----------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC---chHHHH
Confidence 5678888888887 57999998873 122222222333334455444444 4688774432 246789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcC
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaD 400 (540)
+++++.++++|+|+|.+..= .|..+ .-++|..+|.+.+ ++||+ ..|--.+++.+.++. +++++-
T Consensus 86 i~~a~~a~~~G~d~v~~~pP----~~~~~~~~~i~~~~~~ia~~~--~~pv~lYn~P~~~g~~l~~~~~~~L~-~~p~v~ 158 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTP----YYNKPTQEGLYQHFKAIAEAT--DLPIILYNVPGRTGVDILPETVARLA-EHPNIV 158 (292)
T ss_pred HHHHHHHHHcCCCEEEECCC----cCCCCCHHHHHHHHHHHHhcC--CCCEEEEECccccCCCCCHHHHHHHH-cCCCEE
Confidence 99999999999999998531 22222 2356778888877 57776 235556777777754 345554
Q ss_pred ee
Q 009196 401 SC 402 (540)
Q Consensus 401 gV 402 (540)
|+
T Consensus 159 gi 160 (292)
T PRK03170 159 GI 160 (292)
T ss_pred EE
Confidence 44
No 301
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.89 E-value=0.25 Score=50.82 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=62.5
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccccc-EEEEecCC-CCCChhHHHH-HHHHH
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP-ITIKVRTG-YFEGKNRIDS-LIADI 336 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iP-VtVKiR~G-~~e~~~~~~~-la~~l 336 (540)
|++++ ++|||.|=+ |-....+. -|+-....-..+.+...+++|++.++.| |++-+-.| +..+..++.. .++.+
T Consensus 28 Arl~e-~aG~d~i~v--Gds~~~~~-lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~ 103 (264)
T PRK00311 28 AKLFD-EAGVDVILV--GDSLGMVV-LGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLM 103 (264)
T ss_pred HHHHH-HcCCCEEEE--CHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHH
Confidence 44554 789999943 43322221 3444444556778888889988888875 77766533 3234445444 45555
Q ss_pred HHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEE
Q 009196 337 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL 378 (540)
Q Consensus 337 eeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVI 378 (540)
+++|+++|.|-+.. ...+.|+.+.+ ..|||+
T Consensus 104 ~~aGa~aVkiEdg~--------~~~~~I~al~~---agIpV~ 134 (264)
T PRK00311 104 KEAGAHAVKLEGGE--------EVAETIKRLVE---RGIPVM 134 (264)
T ss_pred HHhCCeEEEEcCcH--------HHHHHHHHHHH---CCCCEe
Confidence 66999999996531 11233444443 269997
No 302
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.88 E-value=0.26 Score=51.37 Aligned_cols=152 Identities=8% Similarity=0.042 Sum_probs=85.8
Q ss_pred HHHHHHHhCCCCEEEecCCCCCc--ccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHH
Q 009196 259 TVELIDQQCTVDFIDINMGCPID--IVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 336 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~GCP~~--~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~l 336 (540)
.|++++ .+||+.|=+-..+-.. .-.-|+ | + -..+.+...++.|..++++||+|-+-.|+-+..+ +...++.+
T Consensus 28 SArl~e-~aGf~ai~~sg~~~~as~lG~pD~-g--~-l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~-v~r~V~~~ 101 (294)
T TIGR02319 28 SAKVIQ-QAGFPAVHMTGSGTSASMLGLPDL-G--F-TSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMS-VWRATREF 101 (294)
T ss_pred HHHHHH-HcCCCEEEecHHHHHHHHcCCCCc-C--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHH-HHHHHHHH
Confidence 344554 7899999663111000 000011 1 1 2344666778888888899999999999865544 67889999
Q ss_pred HHcCCcEEEEeccccc--Ccc-CCC--cC-HHHHHHHH---HHcCCCceEEEeC--CCCC---HHHHHHHH---hcCCCc
Q 009196 337 GTWGASAVTVHGRTRQ--QRY-SKL--AD-WDYIYQCA---RKASDDLQVLGNG--DIYS---YLDWNKHK---SDCPEL 399 (540)
Q Consensus 337 eeaGvdaItVHgRtr~--q~y-~g~--ad-w~~I~~i~---~~~~~~IPVIgNG--dI~s---~eDa~~~l---~~~~ga 399 (540)
+++|+.+|+|-.-+.. .++ .+. .. -+++.+|+ +... +.+++.|. |... .+++.+.. .+ .||
T Consensus 102 ~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~-~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e-AGA 179 (294)
T TIGR02319 102 ERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARE-DEDFTIIARTDARESFGLDEAIRRSREYVA-AGA 179 (294)
T ss_pred HHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhcc-CCCeEEEEEecccccCCHHHHHHHHHHHHH-hCC
Confidence 9999999999653311 111 111 11 23444443 3322 23344443 3322 34443311 13 799
Q ss_pred CeeeecHHHHhCCCchHHHHh
Q 009196 400 ASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 400 DgVMIGRgaL~nPwif~eik~ 420 (540)
|+|++- | +.++.-..++.+
T Consensus 180 D~ifi~-~-~~~~~ei~~~~~ 198 (294)
T TIGR02319 180 DCIFLE-A-MLDVEEMKRVRD 198 (294)
T ss_pred CEEEec-C-CCCHHHHHHHHH
Confidence 999994 2 566665555554
No 303
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.78 E-value=0.6 Score=49.31 Aligned_cols=133 Identities=8% Similarity=0.056 Sum_probs=95.8
Q ss_pred CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChh
Q 009196 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKN 327 (540)
Q Consensus 250 G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~ 327 (540)
..+++.+.+.|+.+. ..||..+-|..|... .. + ..+++.-.+.|+++++.+ ++.+.|-.-.+| +..
T Consensus 118 ~~~~~~~~~~a~~~~-~~Gf~~~Kikvg~~~----~~--~---~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~--~~~ 185 (341)
T cd03327 118 PTDLDELPDEAKEYL-KEGYRGMKMRFGYGP----SD--G---HAGLRKNVELVRAIREAVGYDVDLMLDCYMSW--NLN 185 (341)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEECCCCCC----Cc--c---hHHHHHHHHHHHHHHHHhCCCCcEEEECCCCC--CHH
Confidence 357888876666655 469999999765310 00 0 023466778899999887 456666555566 357
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
++..+++.|++.++.+| +|.. .+.+++..+.+++.+ ++||.+.=.+.+..++.+++.. ..+|.|++-
T Consensus 186 ~A~~~~~~l~~~~~~~i-------EeP~-~~~d~~~~~~l~~~~--~~pIa~gE~~~~~~~~~~~i~~-~a~d~i~~d 252 (341)
T cd03327 186 YAIKMARALEKYELRWI-------EEPL-IPDDIEGYAELKKAT--GIPISTGEHEYTVYGFKRLLEG-RAVDILQPD 252 (341)
T ss_pred HHHHHHHHhhhcCCccc-------cCCC-CccCHHHHHHHHhcC--CCCeEeccCccCHHHHHHHHHc-CCCCEEecC
Confidence 89999999999887665 4443 345788889999987 7999987789999999998886 678888753
No 304
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.77 E-value=0.29 Score=51.55 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=68.0
Q ss_pred HHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc--cCccCCCc----CHHHHHHHHHHc
Q 009196 298 RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR--QQRYSKLA----DWDYIYQCARKA 371 (540)
Q Consensus 298 ~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr--~q~y~g~a----dw~~I~~i~~~~ 371 (540)
...+-++.+++..+.||.+-+- | .+.++..++++.++++|+|+|.||--.. .....+.. -++.++.+++.+
T Consensus 86 ~~~~~i~~~~~~~~~pvi~si~-g--~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~ 162 (325)
T cd04739 86 EYLELIRRAKRAVSIPVIASLN-G--VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV 162 (325)
T ss_pred HHHHHHHHHHhccCCeEEEEeC-C--CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc
Confidence 3333444444445789988763 3 2446778999999999999999986421 11111211 146677788777
Q ss_pred CCCceEEE--eCCCCCHHHHHHHHhcCCCcCeeee-cH
Q 009196 372 SDDLQVLG--NGDIYSYLDWNKHKSDCPELASCMI-AR 406 (540)
Q Consensus 372 ~~~IPVIg--NGdI~s~eDa~~~l~~~~gaDgVMI-GR 406 (540)
++||+. .+++.+..++.+.+.+ .|||+|.+ +|
T Consensus 163 --~iPv~vKl~p~~~~~~~~a~~l~~-~Gadgi~~~nt 197 (325)
T cd04739 163 --TIPVAVKLSPFFSALAHMAKQLDA-AGADGLVLFNR 197 (325)
T ss_pred --CCCEEEEcCCCccCHHHHHHHHHH-cCCCeEEEEcC
Confidence 689884 5666677777777776 89999855 44
No 305
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.76 E-value=0.17 Score=55.23 Aligned_cols=82 Identities=13% Similarity=-0.010 Sum_probs=60.6
Q ss_pred HHHHHcCCcEEEEecc---cccCccCCCcCHHHHHHHHHHcC-------CCceEEEeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 334 ADIGTWGASAVTVHGR---TRQQRYSKLADWDYIYQCARKAS-------DDLQVLGNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 334 ~~leeaGvdaItVHgR---tr~q~y~g~adw~~I~~i~~~~~-------~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
.++.+.|+|+|.+..- +.+.+...+..|+.++++++.+. .++||++-||| +.+++.+++. +||+||.
T Consensus 314 ~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~--aGa~GVA 390 (437)
T PRK12290 314 LRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQ--CGVSSLA 390 (437)
T ss_pred HHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHH--cCCCEEE
Confidence 4456789999988543 22233445567888888776542 15999999999 8999999776 8999999
Q ss_pred ecHHHHhCCCchHHH
Q 009196 404 IARGALIKPWIFTEI 418 (540)
Q Consensus 404 IGRgaL~nPwif~ei 418 (540)
+=|+++..+..-..+
T Consensus 391 VVSAI~~A~DP~aa~ 405 (437)
T PRK12290 391 VVRAITLAEDPQLVI 405 (437)
T ss_pred EehHhhcCCCHHHHH
Confidence 999998666544443
No 306
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=94.74 E-value=0.53 Score=50.91 Aligned_cols=122 Identities=7% Similarity=0.041 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~ 330 (540)
+++.+.+.++.+..+.||..|-|..|- .+++.-.+.|+++++++ ++.+.|-.-.+| +..++.
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w--~~~~A~ 230 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAW--SLETAI 230 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCc--CHHHHH
Confidence 677777766655434599999996431 23455567888888877 345555555566 357899
Q ss_pred HHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
++++.|++ ++.+| +|... +++..+++++.. ++||.+.=.+.++.++.++++. ..+|.+++
T Consensus 231 ~~~~~l~~-~l~~i-------EeP~~---d~~~~~~L~~~~--~~PIa~dEs~~~~~~~~~~i~~-~avdil~~ 290 (395)
T cd03323 231 RLAKELEG-VLAYL-------EDPCG---GREGMAEFRRAT--GLPLATNMIVTDFRQLGHAIQL-NAVDIPLA 290 (395)
T ss_pred HHHHhcCc-CCCEE-------ECCCC---CHHHHHHHHHhc--CCCEEcCCcccCHHHHHHHHHc-CCCcEEee
Confidence 99999988 77765 44432 888899999988 6999987788899999998885 67888753
No 307
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=94.73 E-value=0.9 Score=47.29 Aligned_cols=118 Identities=11% Similarity=0.007 Sum_probs=76.0
Q ss_pred CCccccccCCchHHHHHHHHhcccccccEEEEec-CCCCCC--------hhHHHHHHHHHHHcCCcEEEEecccccCccC
Q 009196 286 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR-TGYFEG--------KNRIDSLIADIGTWGASAVTVHGRTRQQRYS 356 (540)
Q Consensus 286 ~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G~~e~--------~~~~~~la~~leeaGvdaItVHgRtr~q~y~ 356 (540)
||.--.+.+|-+...++++.... .+++|-.-+- +|-.++ -.+..+..+.+++.|+|++.|.-.|..+.|.
T Consensus 107 DgS~l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~ 185 (286)
T PRK08610 107 DASHSPFEENVATTKKVVEYAHE-KGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYK 185 (286)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccC
Confidence 33333455566777777776653 3555544332 221111 1234445555678999999988778777786
Q ss_pred CC--cCHHHHHHHHHHcCCCceEEEeCCCCCH-HHHHHHHhcCCCcCeeeecHHH
Q 009196 357 KL--ADWDYIYQCARKASDDLQVLGNGDIYSY-LDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 357 g~--adw~~I~~i~~~~~~~IPVIgNGdI~s~-eDa~~~l~~~~gaDgVMIGRga 408 (540)
+. .||+.+++|++.+ ++|++.-|+=-.+ +++.+++. .|+.=|=|+..+
T Consensus 186 ~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~--~GI~KiNi~T~l 236 (286)
T PRK08610 186 GEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIP--FGTAKINVNTEN 236 (286)
T ss_pred CCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHH--CCCeEEEeccHH
Confidence 53 4789999999998 7999999987776 55556655 577666666544
No 308
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.71 E-value=0.44 Score=49.02 Aligned_cols=129 Identities=17% Similarity=0.141 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. ..|+++|=++.. .|-+- .|. .+.-.++++.+.+.+ .+||.+-+-. .+..++
T Consensus 17 D~~~~~~~i~~l~-~~Gv~Gi~~~Gs--------tGE~~-~Ls-~~Er~~~~~~~~~~~~~~~~vi~gv~~---~s~~~~ 82 (285)
T TIGR00674 17 DFAALEKLIDFQI-ENGTDAIVVVGT--------TGESP-TLS-HEEHKKVIEFVVDLVNGRVPVIAGTGS---NATEEA 82 (285)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECcc--------Ccccc-cCC-HHHHHHHHHHHHHHhCCCCeEEEeCCC---ccHHHH
Confidence 5677888888876 579999988621 12221 222 222233444444433 4788875432 245789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcC
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaD 400 (540)
+++++.++++|+|+|.+..= .|..+ .-++|...|.+.+ ++||+ ..|--.+++.+.++.+ ...+-
T Consensus 83 i~~a~~a~~~Gad~v~v~pP----~y~~~~~~~i~~~~~~i~~~~--~~pi~lYn~P~~tg~~l~~~~l~~L~~-~~~v~ 155 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTP----YYNKPTQEGLYQHFKAIAEEV--DLPIILYNVPSRTGVSLYPETVKRLAE-EPNIV 155 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCC----cCCCCCHHHHHHHHHHHHhcC--CCCEEEEECcHHhcCCCCHHHHHHHHc-CCCEE
Confidence 99999999999999998642 23222 2367788888877 57876 3465667887777654 24433
Q ss_pred e
Q 009196 401 S 401 (540)
Q Consensus 401 g 401 (540)
|
T Consensus 156 g 156 (285)
T TIGR00674 156 A 156 (285)
T ss_pred E
Confidence 3
No 309
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=94.70 E-value=0.25 Score=52.02 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=72.3
Q ss_pred CccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCC-ChhHHHHHHHHHHHcCCcEEEEeccccc--CccCCCcCH-
Q 009196 287 GAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQ--QRYSKLADW- 361 (540)
Q Consensus 287 G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e-~~~~~~~la~~leeaGvdaItVHgRtr~--q~y~g~adw- 361 (540)
|.+++.+.+|+.. +-++.+++.. +.|+.+-+-. .. ......++.+.++..+++++.||--..+ ....+..+|
T Consensus 88 Gs~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~--~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~ 164 (326)
T cd02811 88 GSQRAALEDPELA-ESFTVVREAPPNGPLIANLGA--VQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFR 164 (326)
T ss_pred cCchhhccChhhh-hHHHHHHHhCCCceEEeecCc--cccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHH
Confidence 4454456678866 6667777766 4888874432 21 0113445666667778999999863311 122333455
Q ss_pred ---HHHHHHHHHcCCCceEEE--eCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 362 ---DYIYQCARKASDDLQVLG--NGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 362 ---~~I~~i~~~~~~~IPVIg--NGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+.++.+++.+ ++||+. +|.-.+.+++..+. + .|+|+|-|+
T Consensus 165 ~~~~~i~~l~~~~--~vPVivK~~g~g~s~~~a~~l~-~-~Gvd~I~vs 209 (326)
T cd02811 165 GWLERIEELVKAL--SVPVIVKEVGFGISRETAKRLA-D-AGVKAIDVA 209 (326)
T ss_pred HHHHHHHHHHHhc--CCCEEEEecCCCCCHHHHHHHH-H-cCCCEEEEC
Confidence 5677888887 699996 56667898887754 4 899999874
No 310
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.68 E-value=0.34 Score=50.34 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=64.3
Q ss_pred ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 009196 312 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 391 (540)
Q Consensus 312 iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 391 (540)
.|+.+-+-... +.....++++.+.+.|+++|.+|.-....... ..|+.++++++.+ ++||+.-+ +.+++++..
T Consensus 116 ~~~~~ql~~~~--~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~--~~~~~i~~l~~~~--~~pvivK~-v~s~~~a~~ 188 (299)
T cd02809 116 GPRWFQLYVPR--DREITEDLLRRAEAAGYKALVLTVDTPVLGRR--LTWDDLAWLRSQW--KGPLILKG-ILTPEDALR 188 (299)
T ss_pred CCeEEEEeecC--CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--CCHHHHHHHHHhc--CCCEEEee-cCCHHHHHH
Confidence 68888775432 34567778888899999999998754332221 4789999999988 68998864 789999988
Q ss_pred HHhcCCCcCeeee
Q 009196 392 HKSDCPELASCMI 404 (540)
Q Consensus 392 ~l~~~~gaDgVMI 404 (540)
+.+ .|+|+|.+
T Consensus 189 a~~--~G~d~I~v 199 (299)
T cd02809 189 AVD--AGADGIVV 199 (299)
T ss_pred HHH--CCCCEEEE
Confidence 665 79999977
No 311
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.68 E-value=0.7 Score=48.11 Aligned_cols=130 Identities=14% Similarity=0.165 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. ..|+|+|=+|.. .|-...-..+.-.++++.+++.+ .+||.+-+ | . +..++
T Consensus 26 D~~~l~~li~~l~-~~Gv~Gi~~~Gs----------tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv--~-~-~t~~~ 90 (303)
T PRK03620 26 DEAAYREHLEWLA-PYGAAALFAAGG----------TGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA--G-G-GTAQA 90 (303)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--C-C-CHHHH
Confidence 5677888888877 579999988732 22222233333345555555444 57888855 3 2 56789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEEE-e--CCCCCHHHHHHHHhcCCCcCee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLG-N--GDIYSYLDWNKHKSDCPELASC 402 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVIg-N--GdI~s~eDa~~~l~~~~gaDgV 402 (540)
+++++.++++|++++.+.. ..|..+ .-.+|...+++.+ ++||+. | |--.+++.+.++.++++++-||
T Consensus 91 i~~~~~a~~~Gadav~~~p----P~y~~~~~~~i~~~f~~va~~~--~lpi~lYn~~g~~l~~~~l~~L~~~~pni~gi 163 (303)
T PRK03620 91 IEYAQAAERAGADGILLLP----PYLTEAPQEGLAAHVEAVCKST--DLGVIVYNRDNAVLTADTLARLAERCPNLVGF 163 (303)
T ss_pred HHHHHHHHHhCCCEEEECC----CCCCCCCHHHHHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEE
Confidence 9999999999999998853 223222 2367788888887 588663 2 3234677777755244555444
No 312
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=94.60 E-value=1.4 Score=45.80 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=74.0
Q ss_pred cccCCchHHHHHHHHhcccccccEEEEec-CC-CCCC---------hhHHHHHHHHHHHcCCcEEEEecccccCccCCC-
Q 009196 291 CLLTKPMRMKGIIEATSGTVDKPITIKVR-TG-YFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL- 358 (540)
Q Consensus 291 aLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G-~~e~---------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~- 358 (540)
.+..|-+...++++..+.. ++.|-.-+- +| ..+. -.+..+..+.+++.|+|++.|.-.|..+.|.+.
T Consensus 109 p~eeNi~~T~~vv~~Ah~~-gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p 187 (284)
T PRK12737 109 SFEENIAIVKEVVEFCHRY-DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEP 187 (284)
T ss_pred CHHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCC
Confidence 4455666777777766543 444433331 21 1111 113345555567799999988777777777654
Q ss_pred -cCHHHHHHHHHHcCCCceEEEeCCCCCHHH-HHHHHhcCCCcCeeeecHHHH
Q 009196 359 -ADWDYIYQCARKASDDLQVLGNGDIYSYLD-WNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 359 -adw~~I~~i~~~~~~~IPVIgNGdI~s~eD-a~~~l~~~~gaDgVMIGRgaL 409 (540)
.||+.+++|++.+ ++|++.-|+=..+++ +.+++. .|+.=|=|++.+.
T Consensus 188 ~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~--~Gi~KiNi~T~l~ 236 (284)
T PRK12737 188 KLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAIS--LGICKVNVATELK 236 (284)
T ss_pred cCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHH--CCCeEEEeCcHHH
Confidence 4899999999998 799998887665544 555554 6888888887754
No 313
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.58 E-value=0.42 Score=49.37 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=61.8
Q ss_pred HHHHHHHhccccc--ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcC---C
Q 009196 299 MKGIIEATSGTVD--KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS---D 373 (540)
Q Consensus 299 l~eIv~av~~~v~--iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~---~ 373 (540)
+.+.++.+++... .+|.|-++. .+=+..+.++|+|.|-+-. .+.+.++++.+... .
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~t---------leea~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~~ 228 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECES---------LEEAKNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANYP 228 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCC---------HHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCC
Confidence 4556666666553 456664432 2334455679999888632 24556666655422 1
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 374 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 374 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
++.|+++|+| +++.+.++.. +|+|.|.+|.....-|+
T Consensus 229 ~~~ieAsGgI-t~~ni~~ya~--~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 229 HVLLEASGNI-TLENINAYAK--SGVDAISSGSLIHQATW 265 (273)
T ss_pred CeEEEEECCC-CHHHHHHHHH--cCCCEEEeChhhcCCCc
Confidence 5779999999 9999999776 89999999975543443
No 314
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=94.53 E-value=0.76 Score=47.59 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHHhCC-CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhH
Q 009196 252 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 328 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG-~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~ 328 (540)
|.+.+.+-++.+. ..| +++|=++. ..|-...-..+.-.++++.+++.+ .+||.+-+-. .+..+
T Consensus 19 D~~~~~~~i~~~i-~~G~v~gi~~~G----------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~---~~t~~ 84 (290)
T TIGR00683 19 NEKGLRQIIRHNI-DKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS---VNLKE 84 (290)
T ss_pred CHHHHHHHHHHHH-hCCCcCEEEECC----------cccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC---CCHHH
Confidence 5677888887776 578 99998873 122222223444445566555544 4788875532 24578
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEE-E-----eCCCCCHHHHHHHHhcCCCc
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVL-G-----NGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVI-g-----NGdI~s~eDa~~~l~~~~ga 399 (540)
++++++.++++|+|+|.+.. ..|..+ .-++|..++.+.++ ++||+ . .|--.+++.+.++.+ ++.+
T Consensus 85 ~i~la~~a~~~Gad~v~v~~----P~y~~~~~~~i~~yf~~v~~~~~-~lpv~lYn~P~~tg~~l~~~~i~~L~~-~pnv 158 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVT----PFYYKFSFPEIKHYYDTIIAETG-GLNMIVYSIPFLTGVNMGIEQFGELYK-NPKV 158 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeC----CcCCCCCHHHHHHHHHHHHhhCC-CCCEEEEeCccccccCcCHHHHHHHhc-CCCE
Confidence 89999999999999999853 223322 23667777776653 46765 2 355567777776543 2443
Q ss_pred Ce
Q 009196 400 AS 401 (540)
Q Consensus 400 Dg 401 (540)
-|
T Consensus 159 ~g 160 (290)
T TIGR00683 159 LG 160 (290)
T ss_pred EE
Confidence 33
No 315
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.50 E-value=1.4 Score=45.26 Aligned_cols=184 Identities=13% Similarity=0.157 Sum_probs=103.0
Q ss_pred cCCCCCCH--HHHHHHHHhCCCEEEeccceechhccCChhhhhhhhcccCCCeEEEEecCCc---HHH----HHHHHHHH
Q 009196 193 PLTTVGNL--PFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAY---PDT----LARTVELI 263 (540)
Q Consensus 193 PM~~vtdl--pfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~---p~~----~a~AA~~~ 263 (540)
|..+.-|. .+|.+. +.|++.+-+-.-.+..+.+ ....+.|++++|.+++ ++. +....+-+
T Consensus 38 p~~gl~d~e~~v~~v~-~~g~dav~~~~G~~~~~~~----------~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~a 106 (265)
T COG1830 38 PIEGLEDPENIVAKVA-EAGADAVAMTPGIARSVHR----------GYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDA 106 (265)
T ss_pred CcccccCHHHHHHHHH-hcCCCEEEecHhHHhhcCc----------cccCCcCEEEEeccccccCCCcccceeeeeHHHH
Confidence 55565553 355544 4688876443222222111 1123568888888762 211 12222333
Q ss_pred HHhCCCCEE--EecCCCCCcccccCCccccccCCchHHHHHHHHhccc--ccccEEEEe--cC-CC----CCChhHHHHH
Q 009196 264 DQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT--VDKPITIKV--RT-GY----FEGKNRIDSL 332 (540)
Q Consensus 264 ~~~aG~D~I--DIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~--v~iPVtVKi--R~-G~----~e~~~~~~~l 332 (540)
. ..|+|+| -||.|.... .+-+.++.+....+ .+.|+.+=+ |. .. ..+.+.+-..
T Consensus 107 i-~lgadAV~~~Vy~Gse~e--------------~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~a 171 (265)
T COG1830 107 I-RLGADAVGATVYVGSETE--------------REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYA 171 (265)
T ss_pred H-hCCCcEEEEEEecCCcch--------------HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHH
Confidence 3 4577765 566665542 33334433333222 488877643 32 11 1122233344
Q ss_pred HHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCC--HHHHHHHHhc--CCCcCeeeecHHH
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS--YLDWNKHKSD--CPELASCMIARGA 408 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s--~eDa~~~l~~--~~gaDgVMIGRga 408 (540)
++...+.|+|.|-+ .|++. -+.++++.+.+ .+||+..||=.. .+++.++... ..|+.|+.+||=+
T Consensus 172 aRlaaelGADIiK~-------~ytg~--~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 172 ARLAAELGADIIKT-------KYTGD--PESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred HHHHHHhcCCeEee-------cCCCC--hHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 45568999999854 56653 37788888888 599999999876 3334333221 1699999999988
Q ss_pred HhCCC
Q 009196 409 LIKPW 413 (540)
Q Consensus 409 L~nPw 413 (540)
...|.
T Consensus 241 fQ~~~ 245 (265)
T COG1830 241 FQHED 245 (265)
T ss_pred hccCC
Confidence 77654
No 316
>PRK08185 hypothetical protein; Provisional
Probab=94.37 E-value=1.3 Score=46.10 Aligned_cols=111 Identities=11% Similarity=0.063 Sum_probs=68.1
Q ss_pred CCchHHHHHHHHhcccccccEEEEec-CCCCCC----------hhHHHHHHHHHHHcCCcEEEEecccccCccC----CC
Q 009196 294 TKPMRMKGIIEATSGTVDKPITIKVR-TGYFEG----------KNRIDSLIADIGTWGASAVTVHGRTRQQRYS----KL 358 (540)
Q Consensus 294 ~~p~~l~eIv~av~~~v~iPVtVKiR-~G~~e~----------~~~~~~la~~leeaGvdaItVHgRtr~q~y~----g~ 358 (540)
.+-++..++++.+.. .+++|-..+- +|..++ -.+..+..+.+++.|+|++.+.-.|..+.|. +.
T Consensus 106 eNi~~t~~vv~~a~~-~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~ 184 (283)
T PRK08185 106 ENVALTKEVVELAHK-VGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPE 184 (283)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCC
Confidence 344555555554432 3666655542 222111 1134444555667799999994444333442 33
Q ss_pred cCHHHHHHHHHHcCCCceEEEeCCCCCHH-HHHHHHhcCCCcCeeeecHHHH
Q 009196 359 ADWDYIYQCARKASDDLQVLGNGDIYSYL-DWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 359 adw~~I~~i~~~~~~~IPVIgNGdI~s~e-Da~~~l~~~~gaDgVMIGRgaL 409 (540)
.+++.+++|++.+ ++|++.-|++..++ ++.+++. .|+.=|=|++.+.
T Consensus 185 L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~--~GI~KiNi~T~l~ 232 (283)
T PRK08185 185 LQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQ--LGVGKINISSDMK 232 (283)
T ss_pred cCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHH--CCCeEEEeChHHH
Confidence 5799999999998 79999999996664 4555554 6777777776654
No 317
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=94.36 E-value=0.5 Score=48.54 Aligned_cols=60 Identities=8% Similarity=0.085 Sum_probs=46.7
Q ss_pred HHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+..+.++|+|+|.+-. ...+.++++.+.++..+||++.||| +.+.+.++.. +|+|++.+|
T Consensus 191 a~~A~~~gaDyI~ld~----------~~~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~--~Gvd~Isvg 250 (265)
T TIGR00078 191 AEEAAEAGADIIMLDN----------MKPEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAE--TGVDVISSG 250 (265)
T ss_pred HHHHHHcCCCEEEECC----------CCHHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHH--cCCCEEEeC
Confidence 5556789999998832 2336677777665335999999999 7999999776 899999995
No 318
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.34 E-value=0.49 Score=48.96 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=49.1
Q ss_pred HHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+..+.+.|+|+|.+- ....+.++++++..+.++||.+.||| +.+.+.++.. +|+|+|.+|.--.
T Consensus 201 a~~A~~~gaDyI~lD----------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~--~Gvd~IAvg~l~~ 264 (277)
T PRK08072 201 VREAVAAGADIIMFD----------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG--TGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHcCCCEEEEC----------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH--cCCCEEEEChhhc
Confidence 445568999999882 13346778877766435889999999 8999999776 8999999996433
No 319
>PRK08999 hypothetical protein; Provisional
Probab=94.32 E-value=0.13 Score=53.20 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=53.6
Q ss_pred HHHHHHcCCcEEEEecc----cccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 333 IADIGTWGASAVTVHGR----TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 333 a~~leeaGvdaItVHgR----tr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
+..+.+.|+|+|.+..- |+.. ..+..++.++++++.+ ++||++-||| +.+++.++++ +|+++|.+-+++
T Consensus 239 ~~~a~~~~~dyi~~gpvf~t~tk~~--~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~--~g~~gva~i~~~ 311 (312)
T PRK08999 239 LARAQRLGVDFAVLSPVQPTASHPG--AAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEARE--HGAQGIAGIRGL 311 (312)
T ss_pred HHHHHhcCCCEEEECCCcCCCCCCC--CCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHH--hCCCEEEEEEEe
Confidence 44566789999998653 2222 2345688999998887 7999999999 9999999776 799999887654
No 320
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=94.31 E-value=0.22 Score=55.39 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=57.5
Q ss_pred HHHHHHcCCcEEEEec----ccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC---eeeec
Q 009196 333 IADIGTWGASAVTVHG----RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA---SCMIA 405 (540)
Q Consensus 333 a~~leeaGvdaItVHg----Rtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD---gVMIG 405 (540)
+..+.+.|+|+|.+.. .++. . ..+..|+.++++.+.. .+||++-||| +++++.+++. .|++ +|.++
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~-~-~~~~g~~~~~~~~~~~--~~Pv~aiGGI-~~~~~~~~~~--~G~~~~~gvav~ 475 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKA-N-NKTIGLDGLREVCEAS--KLPVVAIGGI-SASNAASVME--SGAPNLKGVAVV 475 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCC-C-CCCCCHHHHHHHHHcC--CCCEEEECCC-CHHHHHHHHH--cCCCcCceEEEE
Confidence 3456678999998533 2222 2 2456799999998876 7999999999 5999988776 7888 99999
Q ss_pred HHHHhCCCchH
Q 009196 406 RGALIKPWIFT 416 (540)
Q Consensus 406 RgaL~nPwif~ 416 (540)
++++..+....
T Consensus 476 ~~i~~~~d~~~ 486 (502)
T PLN02898 476 SALFDQEDVLK 486 (502)
T ss_pred eHHhcCCCHHH
Confidence 99986544333
No 321
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=94.30 E-value=1 Score=47.87 Aligned_cols=107 Identities=11% Similarity=0.004 Sum_probs=73.5
Q ss_pred cccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEE-eccccc-Ccc-CCCcCHHHHH
Q 009196 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-HGRTRQ-QRY-SKLADWDYIY 365 (540)
Q Consensus 289 GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItV-HgRtr~-q~y-~g~adw~~I~ 365 (540)
||..+++..++.++- .+++||.+|.-++ .+.++....+..+...|...|++ |..++. ..| ....|+..+.
T Consensus 183 gAr~~~N~~LL~~va-----~~~kPViLk~G~~--~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~ 255 (335)
T PRK08673 183 GARNMQNFDLLKEVG-----KTNKPVLLKRGMS--ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVP 255 (335)
T ss_pred CcccccCHHHHHHHH-----cCCCcEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHH
Confidence 788899988877654 3589999987764 24567778888888899866554 522322 133 2346889999
Q ss_pred HHHHHcCCCceEEEeCCCCC------HHHHHHHHhcCCCcCeeeecH
Q 009196 366 QCARKASDDLQVLGNGDIYS------YLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 366 ~i~~~~~~~IPVIgNGdI~s------~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+++.. ++|||+.-+=.. +..+..++. .||||+||=.
T Consensus 256 ~lk~~~--~lPVi~d~sH~~G~~~~v~~~a~AAvA--~GAdGliIE~ 298 (335)
T PRK08673 256 VIKKLT--HLPVIVDPSHATGKRDLVEPLALAAVA--AGADGLIVEV 298 (335)
T ss_pred HHHHhc--CCCEEEeCCCCCccccchHHHHHHHHH--hCCCEEEEEe
Confidence 999887 699987533222 234455555 7999999973
No 322
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=94.27 E-value=1 Score=46.81 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=74.4
Q ss_pred cccCCchHHHHHHHHhcccccccEEEEec-C-CCCCC---------hhHHHHHHHHHHHcCCcEEEEecccccCccCC--
Q 009196 291 CLLTKPMRMKGIIEATSGTVDKPITIKVR-T-GYFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK-- 357 (540)
Q Consensus 291 aLl~~p~~l~eIv~av~~~v~iPVtVKiR-~-G~~e~---------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g-- 357 (540)
.+..|-+...++++..+. .+++|-.-+- + |..+. -.+..+..+.+++.|+|+|.|.-.|..+.|.+
T Consensus 107 p~eeNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p 185 (282)
T TIGR01858 107 PFAQNVKLVKEVVDFCHR-QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTP 185 (282)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCC
Confidence 345566777777776654 2555444332 1 11111 11334455556789999999877777777766
Q ss_pred CcCHHHHHHHHHHcCCCceEEEeCCCCCHHH-HHHHHhcCCCcCeeeecHHHH
Q 009196 358 LADWDYIYQCARKASDDLQVLGNGDIYSYLD-WNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 358 ~adw~~I~~i~~~~~~~IPVIgNGdI~s~eD-a~~~l~~~~gaDgVMIGRgaL 409 (540)
.-||+.+++|++.+ ++|++.-|+=..+++ +.+++. .|+.=|=|++.+.
T Consensus 186 ~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~--~Gi~KiNi~T~l~ 234 (282)
T TIGR01858 186 KLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIE--LGICKVNVATELK 234 (282)
T ss_pred ccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHH--cCCeEEEeCcHHH
Confidence 35899999999998 799998887766554 445554 6777777776654
No 323
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.24 E-value=0.38 Score=50.80 Aligned_cols=102 Identities=6% Similarity=-0.024 Sum_probs=67.6
Q ss_pred ccccC-CchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcC--CcEEEEecccccCccCCCcCHHHHHH
Q 009196 290 SCLLT-KPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG--ASAVTVHGRTRQQRYSKLADWDYIYQ 366 (540)
Q Consensus 290 saLl~-~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaG--vdaItVHgRtr~q~y~g~adw~~I~~ 366 (540)
+.+.+ +++...+.++.++.. .+ .|-+..|..+ +..+.+..|.++| +|.|.+.- .++++. .-++.++.
T Consensus 61 ~i~hK~~~E~~~sfvrk~k~~-~L--~v~~SvG~t~---e~~~r~~~lv~a~~~~d~i~~D~---ahg~s~-~~~~~i~~ 130 (321)
T TIGR01306 61 YIMHRFDEESRIPFIKDMQER-GL--FASISVGVKA---CEYEFVTQLAEEALTPEYITIDI---AHGHSN-SVINMIKH 130 (321)
T ss_pred EEEecCCHHHHHHHHHhcccc-cc--EEEEEcCCCH---HHHHHHHHHHhcCCCCCEEEEeC---ccCchH-HHHHHHHH
Confidence 34455 666555555555432 33 3444556542 3345666777888 69998732 112211 23678999
Q ss_pred HHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 367 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 367 i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+++.+ +.|++..|.|.+++++..+++ .|||+|.||
T Consensus 131 i~~~~--p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~ 165 (321)
T TIGR01306 131 IKTHL--PDSFVIAGNVGTPEAVRELEN--AGADATKVG 165 (321)
T ss_pred HHHhC--CCCEEEEecCCCHHHHHHHHH--cCcCEEEEC
Confidence 99988 578888999999999999775 899999876
No 324
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=94.22 E-value=0.26 Score=52.24 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCcEEEEecccccCccCCCcCHHHHHHHHH-----Hc-CCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 340 GASAVTVHGRTRQQRYSKLADWDYIYQCAR-----KA-SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 340 GvdaItVHgRtr~q~y~g~adw~~I~~i~~-----~~-~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
|+..|-|-+|.-. +-..|.+...++.. .+ +.++-+|+-+||.+++|+..+.. .|+|+|.||..++..|.
T Consensus 251 ga~iIGINNRdL~---Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~--~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 251 GVELIGINNRSLE---TFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQN--AGVKAVLVGESLVKQDD 325 (338)
T ss_pred CCCEEEEeCCCCC---cceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHH--CCCCEEEECHHHhCCCC
Confidence 6666666666432 22346677777766 34 23577899999999999999665 79999999999999998
Q ss_pred chHHHHh
Q 009196 414 IFTEIKE 420 (540)
Q Consensus 414 if~eik~ 420 (540)
.-..+++
T Consensus 326 p~~~l~~ 332 (338)
T PLN02460 326 PGKGIAG 332 (338)
T ss_pred HHHHHHH
Confidence 7666654
No 325
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=94.20 E-value=1.4 Score=45.94 Aligned_cols=148 Identities=13% Similarity=0.080 Sum_probs=90.0
Q ss_pred CCeEEEEecCC-cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec
Q 009196 241 EDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 319 (540)
Q Consensus 241 e~p~~vQL~G~-~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR 319 (540)
..|+.++|=+. +.+...+|. ++||+-|-+- |.--.+..|-++..++++..+.. ++.|-.-+-
T Consensus 74 ~VPValHLDHg~~~e~i~~ai-----~~GFtSVM~D-----------gS~lp~eeNi~~T~evv~~Ah~~-gv~VEaElG 136 (286)
T PRK12738 74 NMPLALHLDHHESLDDIRRKV-----HAGVRSAMID-----------GSHFPFAENVKLVKSVVDFCHSQ-DCSVEAELG 136 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHH-----HcCCCeEeec-----------CCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEE
Confidence 45666666544 333332222 3466666653 33333456677777777776542 444443321
Q ss_pred -CC-CCCC---------hhHHHHHHHHHHHcCCcEEEEecccccCccCC--CcCHHHHHHHHHHcCCCceEEEeCCCCCH
Q 009196 320 -TG-YFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK--LADWDYIYQCARKASDDLQVLGNGDIYSY 386 (540)
Q Consensus 320 -~G-~~e~---------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g--~adw~~I~~i~~~~~~~IPVIgNGdI~s~ 386 (540)
+| ..++ -.+..+..+.+++.|+|++.|.-.|..+.|.+ ..+|+.+++|++.+ ++|++.-|+=-.+
T Consensus 137 ~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~ 214 (286)
T PRK12738 137 RLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDVP 214 (286)
T ss_pred eeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCC
Confidence 21 1111 11344555556788999999887777777754 35899999999998 7999988876555
Q ss_pred -HHHHHHHhcCCCcCeeeecHHHH
Q 009196 387 -LDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 387 -eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
+++.+++. .|+.=|=|++.+.
T Consensus 215 ~e~~~kai~--~GI~KiNi~T~l~ 236 (286)
T PRK12738 215 DEFVRRTIE--LGVTKVNVATELK 236 (286)
T ss_pred HHHHHHHHH--cCCeEEEeCcHHH
Confidence 44555554 6777777776553
No 326
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.19 E-value=2.9 Score=41.44 Aligned_cols=181 Identities=12% Similarity=0.103 Sum_probs=100.0
Q ss_pred CCCCCCHHHHHHHHHhCCCEEEeccceechhccC-Chhhhh-hhhccc-CCCeEEEEecCCcHHHHHHHHHHHHHhCCCC
Q 009196 194 LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG-QASEWA-LLRRHS-SEDLFGVQICGAYPDTLARTVELIDQQCTVD 270 (540)
Q Consensus 194 M~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g-~~~e~~-ll~~~~-~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D 270 (540)
.+|+++.---++|.++|||++- ++....--+- .....+ +.+.-+ .-.+++| +...+++.+.+.++ ++++|
T Consensus 7 ICGi~~~eda~~~~~~Gad~iG--fI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i~~~~~----~~~~d 79 (210)
T PRK01222 7 ICGITTPEDAEAAAELGADAIG--FVFYPKSPRYVSPEQAAELAAALPPFVKVVGV-FVNASDEEIDEIVE----TVPLD 79 (210)
T ss_pred ECCCCcHHHHHHHHHcCCCEEE--EccCCCCCCcCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHHHHHHH----hcCCC
Confidence 3677888777888899998652 2221110000 111111 222212 2234443 23456666666543 57899
Q ss_pred EEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEeccc
Q 009196 271 FIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRT 350 (540)
Q Consensus 271 ~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRt 350 (540)
.|.||...+ +.. ++.++...++++.--++.. +. .+...+ ... ...+|++.+...+
T Consensus 80 ~vQLHg~e~----------------~~~----~~~l~~~~~~~iik~i~v~--~~-~~l~~~-~~~-~~~~d~~L~Ds~~ 134 (210)
T PRK01222 80 LLQLHGDET----------------PEF----CRQLKRRYGLPVIKALRVR--SA-GDLEAA-AAY-YGDADGLLLDAYV 134 (210)
T ss_pred EEEECCCCC----------------HHH----HHHHHhhcCCcEEEEEecC--CH-HHHHHH-Hhh-hccCCEEEEcCCC
Confidence 999985333 222 3444444456665445543 11 112111 111 2368898887654
Q ss_pred ccCccCC-CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 351 RQQRYSK-LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 351 r~q~y~g-~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
...+-+| ..||+.+. ... +.|++..||| +++.+.+++.. .+..||=+..|.=..|-
T Consensus 135 ~~~GGtG~~~dw~~l~---~~~--~~p~~LAGGi-~peNv~~ai~~-~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 135 GLPGGTGKTFDWSLLP---AGL--AKPWILAGGL-NPDNVAEAIRQ-VRPYGVDVSSGVESAPG 191 (210)
T ss_pred CCCCCCCCccchHHhh---hcc--CCCEEEECCC-CHHHHHHHHHh-cCCCEEEecCceECCCC
Confidence 3111122 35898772 223 4699999999 89999998875 57788888877755454
No 327
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=94.19 E-value=1.2 Score=47.52 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=81.2
Q ss_pred CCeEEEEecCCc--------HHHHHHHHHHHHHhCCCCEEE--ecCCCCCcccccCCccccccCCchHHHHHHHHhcccc
Q 009196 241 EDLFGVQICGAY--------PDTLARTVELIDQQCTVDFID--INMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310 (540)
Q Consensus 241 e~p~~vQL~G~~--------p~~~a~AA~~~~~~aG~D~ID--IN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v 310 (540)
..|+++.|.++. ...+.-.++-+. ..|+|+|= ||.|.+... +..+.+.++++... ..
T Consensus 125 ~iplIlkln~~t~l~~~~~~~~~l~~sVedAl-rLGAdAV~~tvy~Gs~~E~-----------~ml~~l~~i~~ea~-~~ 191 (348)
T PRK09250 125 KIPFILKLNHNELLSYPNTYDQALTASVEDAL-RLGAVAVGATIYFGSEESR-----------RQIEEISEAFEEAH-EL 191 (348)
T ss_pred CCCEEEEeCCCCCCCCCCCCcccceecHHHHH-HCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHHH-Hh
Confidence 456777777642 111222233344 46888764 455522110 11223334444432 24
Q ss_pred cccEEEEe--cCCC-CCC------hhHHHHHHHHHHHcCCcEEEEecc-------------cccCccCC---CcCHHHHH
Q 009196 311 DKPITIKV--RTGY-FEG------KNRIDSLIADIGTWGASAVTVHGR-------------TRQQRYSK---LADWDYIY 365 (540)
Q Consensus 311 ~iPVtVKi--R~G~-~e~------~~~~~~la~~leeaGvdaItVHgR-------------tr~q~y~g---~adw~~I~ 365 (540)
++|+.+=+ |-.. .++ .+.+...++...+.|+|.|-+--- +..-.|.+ ...-+.++
T Consensus 192 GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~ 271 (348)
T PRK09250 192 GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVR 271 (348)
T ss_pred CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHH
Confidence 89987632 3211 111 123444555668999999976321 11111211 11223445
Q ss_pred HHHHHc-CCCceEEEeCCCC-CHHHHHHHHhcC-----CCcCeeeecHHHHhCC
Q 009196 366 QCARKA-SDDLQVLGNGDIY-SYLDWNKHKSDC-----PELASCMIARGALIKP 412 (540)
Q Consensus 366 ~i~~~~-~~~IPVIgNGdI~-s~eDa~~~l~~~-----~gaDgVMIGRgaL~nP 412 (540)
.+.+.+ .+++||+..||=. +.+++.+++... .|+.||++||=....|
T Consensus 272 ~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 272 YQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRP 325 (348)
T ss_pred HHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCC
Confidence 555554 2258999888877 444555443321 6999999999765544
No 328
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.13 E-value=1.1 Score=46.41 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHHh-CCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhH
Q 009196 252 YPDTLARTVELIDQQ-CTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 328 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~-aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~ 328 (540)
+.+.+.+-++.+. . .|+++|=++. ..|-...-..+.-.++++.+++.+ .+||.+-+-. .+..+
T Consensus 22 D~~~~~~li~~l~-~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~---~~t~~ 87 (293)
T PRK04147 22 DEQGLRRLVRFNI-EKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS---VNTAE 87 (293)
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC---CCHHH
Confidence 5678888888887 5 7999998873 122222222333344555554444 4788884432 24678
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEEEe------CCCCCHHHHHHHHhcCCCc
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLGN------GDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVIgN------GdI~s~eDa~~~l~~~~ga 399 (540)
++++++.++++|+|++.+..= .|..+ .-++|+.+|.+.+ ++||+.= |--.+++.+.++.. ..++
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P----~y~~~~~~~l~~~f~~va~a~--~lPv~iYn~P~~tg~~l~~~~l~~L~~-~pnv 160 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTP----FYYPFSFEEICDYYREIIDSA--DNPMIVYNIPALTGVNLSLDQFNELFT-LPKV 160 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCC----cCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCchhhccCCCHHHHHHHhc-CCCE
Confidence 999999999999999998742 23222 2367888888887 5787642 55557887777553 3555
Q ss_pred Cee
Q 009196 400 ASC 402 (540)
Q Consensus 400 DgV 402 (540)
-||
T Consensus 161 vgi 163 (293)
T PRK04147 161 IGV 163 (293)
T ss_pred EEE
Confidence 444
No 329
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.09 E-value=0.15 Score=50.14 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=84.8
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc------cCCccccccCCchHHHHH---------
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI-----VV------NKGAGSCLLTKPMRMKGI--------- 302 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~-----v~------~~G~GsaLl~~p~~l~eI--------- 302 (540)
+++.=|.+.++++..+.++.+. +.|+..|||-+--|... ++ .-|.|+ ..+++.+...
T Consensus 9 ~iiaVir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGT--V~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 9 KIIAVIRGDDPEDAVPIAEALI-EGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGT--VLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp SEEEEETTSSGGGHHHHHHHHH-HTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES----SHHHHHHHHHHT-SEEE
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEe--ccCHHHHHHHHHcCCCEEE
Confidence 4556677888899999998887 67999999987655310 00 012222 2233333333
Q ss_pred --------HHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCC
Q 009196 303 --------IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDD 374 (540)
Q Consensus 303 --------v~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~ 374 (540)
++..++. ++|+.--.- +.-++. .+.++|++.|-+.+-.. +.| ..|++.++.-+| +
T Consensus 86 SP~~~~~v~~~~~~~-~i~~iPG~~--------TptEi~-~A~~~G~~~vK~FPA~~---~GG---~~~ik~l~~p~p-~ 148 (196)
T PF01081_consen 86 SPGFDPEVIEYAREY-GIPYIPGVM--------TPTEIM-QALEAGADIVKLFPAGA---LGG---PSYIKALRGPFP-D 148 (196)
T ss_dssp ESS--HHHHHHHHHH-TSEEEEEES--------SHHHHH-HHHHTT-SEEEETTTTT---TTH---HHHHHHHHTTTT-T
T ss_pred CCCCCHHHHHHHHHc-CCcccCCcC--------CHHHHH-HHHHCCCCEEEEecchh---cCc---HHHHHHHhccCC-C
Confidence 3322211 233222111 111222 23567888887764321 111 478999998887 7
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 375 LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 375 IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
++++..||| +.+.+.+++. .|+.+|.+|+.+..+.
T Consensus 149 ~~~~ptGGV-~~~N~~~~l~--ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 149 LPFMPTGGV-NPDNLAEYLK--AGAVAVGGGSWLFPKD 183 (196)
T ss_dssp -EEEEBSS---TTTHHHHHT--STTBSEEEESGGGSHH
T ss_pred CeEEEcCCC-CHHHHHHHHh--CCCEEEEECchhcCHH
Confidence 999999999 5688999887 7999999997665443
No 330
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.08 E-value=1.1 Score=46.31 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. +.|+++|=++.+ .|-...-..+.-.++++.+.+.+ ++||.+-+ |. +..++
T Consensus 19 D~~~l~~l~~~l~-~~Gv~gi~v~Gs----------tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv--~~--~t~~~ 83 (289)
T cd00951 19 DEDAYRAHVEWLL-SYGAAALFAAGG----------TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA--GY--GTATA 83 (289)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec--CC--CHHHH
Confidence 5677888888777 579999988732 22222222333334455444444 57888855 32 56788
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCC---cCHHHHHHHHHHcCCCceEEEe---CCCCCHHHHHHHHhcCCCcCee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLGN---GDIYSYLDWNKHKSDCPELASC 402 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~---adw~~I~~i~~~~~~~IPVIgN---GdI~s~eDa~~~l~~~~gaDgV 402 (540)
.++++.++++|++++.+.. ..|..+ .-.+|+..|.+.+ ++||+.= |--.+++.+.++..+++.+-||
T Consensus 84 i~~a~~a~~~Gad~v~~~p----P~y~~~~~~~i~~~f~~v~~~~--~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgi 156 (289)
T cd00951 84 IAYAQAAEKAGADGILLLP----PYLTEAPQEGLYAHVEAVCKST--DLGVIVYNRANAVLTADSLARLAERCPNLVGF 156 (289)
T ss_pred HHHHHHHHHhCCCEEEECC----CCCCCCCHHHHHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEE
Confidence 9999999999999998843 223222 2357788888877 5886642 4334677777755424555554
No 331
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=94.06 E-value=0.97 Score=48.95 Aligned_cols=142 Identities=13% Similarity=0.017 Sum_probs=96.4
Q ss_pred cCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCc---ccccCCcccc------c-------c---CCchHHHHHHHHhccc
Q 009196 249 CGAYPDTLARTVELIDQQCTVDFIDINMGCPID---IVVNKGAGSC------L-------L---TKPMRMKGIIEATSGT 309 (540)
Q Consensus 249 ~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~---~v~~~G~Gsa------L-------l---~~p~~l~eIv~av~~~ 309 (540)
.+.+++.+.+-|+.+. +.||..|-|..|-|-. .....+.|.. . . ...+...+.|++|+++
T Consensus 124 ~~~~~~~~~~~a~~~~-~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 124 NGRDIDELLDDVARHL-ELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCHHHHHHHHHHHH-HcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 4556777765555554 4599999998764320 0000000000 0 0 1123446789999998
Q ss_pred c--cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHH
Q 009196 310 V--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL 387 (540)
Q Consensus 310 v--~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~e 387 (540)
+ ++.|.|-.-.+| +.+++..+++.|++.++.+| +|.. .+.+++..+++++.+ ++||.+.=.+.++.
T Consensus 203 ~G~~~~l~vDaN~~w--~~~~A~~~~~~l~~~~l~~i-------EeP~-~~~d~~~~~~L~~~~--~iPIa~dEs~~~~~ 270 (404)
T PRK15072 203 FGFDLHLLHDVHHRL--TPIEAARLGKSLEPYRLFWL-------EDPT-PAENQEAFRLIRQHT--TTPLAVGEVFNSIW 270 (404)
T ss_pred hCCCceEEEECCCCC--CHHHHHHHHHhccccCCcEE-------ECCC-CccCHHHHHHHHhcC--CCCEEeCcCccCHH
Confidence 8 356666665566 35789999999999888776 3443 345788889999988 79999888899999
Q ss_pred HHHHHHhcCCCcCeeee
Q 009196 388 DWNKHKSDCPELASCMI 404 (540)
Q Consensus 388 Da~~~l~~~~gaDgVMI 404 (540)
++..+++. ..+|.|.+
T Consensus 271 ~~~~li~~-~a~dii~~ 286 (404)
T PRK15072 271 DCKQLIEE-QLIDYIRT 286 (404)
T ss_pred HHHHHHHc-CCCCEEec
Confidence 99998886 67888875
No 332
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.03 E-value=0.65 Score=48.37 Aligned_cols=66 Identities=12% Similarity=0.216 Sum_probs=47.5
Q ss_pred HHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHH----cCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 334 ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARK----ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 334 ~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~----~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
..+.++|+|.|-+-. ...+.++++.+. .+ ++|+.+.||| +.+.+.++.. +|+|+|.+|+...
T Consensus 210 ~eA~~~GaD~I~LDn----------~~~e~l~~av~~~~~~~~-~i~leAsGGI-t~~ni~~ya~--tGvD~Isvgsl~~ 275 (288)
T PRK07428 210 QEALEYGADIIMLDN----------MPVDLMQQAVQLIRQQNP-RVKIEASGNI-TLETIRAVAE--TGVDYISSSAPIT 275 (288)
T ss_pred HHHHHcCCCEEEECC----------CCHHHHHHHHHHHHhcCC-CeEEEEECCC-CHHHHHHHHH--cCCCEEEEchhhh
Confidence 344579999998852 222344444332 33 7999999999 7999999765 8999999998766
Q ss_pred hCCC
Q 009196 410 IKPW 413 (540)
Q Consensus 410 ~nPw 413 (540)
.-|+
T Consensus 276 sa~~ 279 (288)
T PRK07428 276 RSPW 279 (288)
T ss_pred CCCc
Confidence 4554
No 333
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.03 E-value=1.1 Score=45.60 Aligned_cols=130 Identities=8% Similarity=0.055 Sum_probs=87.9
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecC
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRT 320 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~ 320 (540)
|+..-|.+..++.+.+ ++... +.||..+-|.+| ...++.-.+.|+++++.++ ..+.+-.--
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~-~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 136 (263)
T cd03320 74 PVNALLPAGDAAALGE-AKAAY-GGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDANG 136 (263)
T ss_pred ceeEEecCCCHHHHHH-HHHHH-hCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence 3444455666644444 44444 459999998654 1234555677888888763 445444444
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
+| +..++..+++.|++.++.+| +|... +.+++...+++ . ++||.+.=.+.+..++..++.. ..+|
T Consensus 137 ~w--~~~~A~~~~~~l~~~~i~~i-------EqP~~-~~d~~~~~~l~--~--~~PIa~dEs~~~~~~~~~~~~~-~~~d 201 (263)
T cd03320 137 GW--SLEEALAFLEALAAGRIEYI-------EQPLP-PDDLAELRRLA--A--GVPIALDESLRRLDDPLALAAA-GALG 201 (263)
T ss_pred CC--CHHHHHHHHHhhcccCCceE-------ECCCC-hHHHHHHHHhh--c--CCCeeeCCccccccCHHHHHhc-CCCC
Confidence 56 35789999999999887766 44442 35677777766 4 6999998889999999998875 6788
Q ss_pred eeee
Q 009196 401 SCMI 404 (540)
Q Consensus 401 gVMI 404 (540)
.|++
T Consensus 202 ~v~~ 205 (263)
T cd03320 202 ALVL 205 (263)
T ss_pred EEEE
Confidence 8765
No 334
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=94.01 E-value=0.19 Score=58.74 Aligned_cols=75 Identities=7% Similarity=-0.012 Sum_probs=57.7
Q ss_pred cCCcEEEEeccc---ccCccCCCcCHHHHHHHHHHcCCC---ceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 339 WGASAVTVHGRT---RQQRYSKLADWDYIYQCARKASDD---LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 339 aGvdaItVHgRt---r~q~y~g~adw~~I~~i~~~~~~~---IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
+|+|+|.+..-- .+....++..|+.++++++.+ . +||++-||| +++++.+++. .||+||.+-++++..+
T Consensus 127 ~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~--~~~~iPv~AiGGI-~~~~~~~~~~--~Ga~giAvisai~~a~ 201 (755)
T PRK09517 127 ALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVA--QDHGIASVAIGGV-GLRNAAELAA--TGIDGLCVVSAIMAAA 201 (755)
T ss_pred CCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhc--CcCCCCEEEECCC-CHHHHHHHHH--cCCCEEEEehHhhCCC
Confidence 369999986531 112223446899999999887 5 999999999 9999999776 7999999999999877
Q ss_pred CchHHH
Q 009196 413 WIFTEI 418 (540)
Q Consensus 413 wif~ei 418 (540)
+....+
T Consensus 202 d~~~a~ 207 (755)
T PRK09517 202 NPAAAA 207 (755)
T ss_pred CHHHHH
Confidence 744333
No 335
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.01 E-value=0.15 Score=56.55 Aligned_cols=71 Identities=6% Similarity=0.004 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+..+.+..|.++|++.|.|-.-. .++ ..-.+.|+.|++..+ ++|||+ |.+.|++.+..+.. .|||+|-||
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~---g~~-~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~--~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH---GHQ-VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLE--AGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC---CCc-HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHH--hCCCEEEEC
Confidence 356788999999999999984221 111 133578999999887 799998 88999999999775 799998755
No 336
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.00 E-value=0.66 Score=47.69 Aligned_cols=67 Identities=7% Similarity=0.024 Sum_probs=46.1
Q ss_pred HHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCC--CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 334 ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD--DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 334 ~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~--~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
..+.++|+|.|.+-.- ..+.++++.+.++. ++||.+.||| +++.+.++.. +|||+|.+|.-....
T Consensus 195 ~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~asGGI-t~~ni~~~a~--~Gad~Isvgal~~s~ 261 (269)
T cd01568 195 EEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLEASGGI-TLENIRAYAE--TGVDVISTGALTHSA 261 (269)
T ss_pred HHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEEEECCC-CHHHHHHHHH--cCCCEEEEcHHHcCC
Confidence 3345689999998432 22444544444322 6899999999 7899988775 899999997544444
Q ss_pred CC
Q 009196 412 PW 413 (540)
Q Consensus 412 Pw 413 (540)
|+
T Consensus 262 ~~ 263 (269)
T cd01568 262 PA 263 (269)
T ss_pred Cc
Confidence 44
No 337
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=93.95 E-value=0.5 Score=48.59 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=48.7
Q ss_pred HHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
+..+.++|+|+|.+-. ...+.++++.+..+.++||++.||| +.+.+.++.. +|+|+|.+|.-
T Consensus 195 a~~A~~~gaDyI~ld~----------~~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~--~Gvd~Iav~sl 256 (268)
T cd01572 195 LKEALEAGADIIMLDN----------MSPEELREAVALLKGRVLLEASGGI-TLENIRAYAE--TGVDYISVGAL 256 (268)
T ss_pred HHHHHHcCCCEEEECC----------cCHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHH--cCCCEEEEEee
Confidence 4455679999998842 2357788887766435999999999 7999999775 89999999963
No 338
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.93 E-value=0.52 Score=48.48 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=72.8
Q ss_pred cccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEE-ecccc-cCccC-CCcCHHHHH
Q 009196 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-HGRTR-QQRYS-KLADWDYIY 365 (540)
Q Consensus 289 GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItV-HgRtr-~q~y~-g~adw~~I~ 365 (540)
||..+.+..++.++ ..+++||.+|.-+. -+.++....+..+...|..-+++ |-.++ ...|. ...|+..+.
T Consensus 117 ga~~~~n~~LL~~~-----a~~gkPV~lk~G~~--~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~ 189 (266)
T PRK13398 117 GSRNMQNFELLKEV-----GKTKKPILLKRGMS--ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVA 189 (266)
T ss_pred CcccccCHHHHHHH-----hcCCCcEEEeCCCC--CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHH
Confidence 77788887776655 24689999987664 24567788888889999865554 43221 11342 234778888
Q ss_pred HHHHHcCCCceEEEe-CCCCC-----HHHHHHHHhcCCCcCeeeecHHH
Q 009196 366 QCARKASDDLQVLGN-GDIYS-----YLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 366 ~i~~~~~~~IPVIgN-GdI~s-----~eDa~~~l~~~~gaDgVMIGRga 408 (540)
.+++.. ++||+.+ .=... +..+..++. .||||+||=+-.
T Consensus 190 ~lk~~~--~~pV~~D~sHs~G~~~~v~~~~~aAva--~Ga~Gl~iE~H~ 234 (266)
T PRK13398 190 VIKELS--HLPIIVDPSHATGRRELVIPMAKAAIA--AGADGLMIEVHP 234 (266)
T ss_pred HHHhcc--CCCEEEeCCCcccchhhHHHHHHHHHH--cCCCEEEEeccC
Confidence 888877 6899984 32223 455556665 789999987543
No 339
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=93.82 E-value=0.68 Score=45.35 Aligned_cols=111 Identities=17% Similarity=0.023 Sum_probs=66.4
Q ss_pred HHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEE--EEecCCCCC-ChhHHHHHHHH
Q 009196 259 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT--IKVRTGYFE-GKNRIDSLIAD 335 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVt--VKiR~G~~e-~~~~~~~la~~ 335 (540)
.|+.+. ..|+.+|-+|. + +=++++++.+++||. +|-...-.+ ...-..+=++.
T Consensus 4 mA~Aa~-~gGA~giR~~~-------------------~----~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~ 59 (192)
T PF04131_consen 4 MAKAAE-EGGAVGIRANG-------------------V----EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDA 59 (192)
T ss_dssp HHHHHH-HCT-SEEEEES-------------------H----HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHH
T ss_pred HHHHHH-HCCceEEEcCC-------------------H----HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHH
Confidence 343333 57888998871 1 447788899999986 443221111 11123455677
Q ss_pred HHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 336 IGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 336 leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
|.++|++.|.+.+-.|. |. ..-.+.+.+|++.. +..-.||.|.+++..+.+ .|+|.|.
T Consensus 60 l~~aGadIIAlDaT~R~-Rp--~~l~~li~~i~~~~-----~l~MADist~ee~~~A~~--~G~D~I~ 117 (192)
T PF04131_consen 60 LAEAGADIIALDATDRP-RP--ETLEELIREIKEKY-----QLVMADISTLEEAINAAE--LGFDIIG 117 (192)
T ss_dssp HHHCT-SEEEEE-SSSS--S--S-HHHHHHHHHHCT-----SEEEEE-SSHHHHHHHHH--TT-SEEE
T ss_pred HHHcCCCEEEEecCCCC-CC--cCHHHHHHHHHHhC-----cEEeeecCCHHHHHHHHH--cCCCEEE
Confidence 88999999999874432 22 34467889998854 555689999999999876 7899874
No 340
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.80 E-value=1.1 Score=47.95 Aligned_cols=106 Identities=16% Similarity=0.070 Sum_probs=72.4
Q ss_pred cccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEE-ecc--cccCccC-CCcCHHHH
Q 009196 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-HGR--TRQQRYS-KLADWDYI 364 (540)
Q Consensus 289 GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItV-HgR--tr~q~y~-g~adw~~I 364 (540)
||..+.+..++.++ . .+++||.+|.-+. -+.++....+..+.+.|..-|.+ |.. |-...|. ...||..+
T Consensus 191 ga~~~~n~~LL~~v----a-~t~kPVllk~G~~--~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai 263 (352)
T PRK13396 191 GARNMQNFSLLKKV----G-AQDKPVLLKRGMA--ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVI 263 (352)
T ss_pred CcccccCHHHHHHH----H-ccCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHH
Confidence 77888887765443 3 2589999987664 35677888888888999965555 542 3232443 45789999
Q ss_pred HHHHHHcCCCceEEEeC----CCC--CHHHHHHHHhcCCCcCeeeec
Q 009196 365 YQCARKASDDLQVLGNG----DIY--SYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 365 ~~i~~~~~~~IPVIgNG----dI~--s~eDa~~~l~~~~gaDgVMIG 405 (540)
..+++.. ++|||.+- |.. .+.-+..++. .||||+||=
T Consensus 264 ~~lk~~~--~lPVi~DpsH~~G~sd~~~~~a~AAva--~GAdGliIE 306 (352)
T PRK13396 264 PVLRSLT--HLPIMIDPSHGTGKSEYVPSMAMAAIA--AGTDSLMIE 306 (352)
T ss_pred HHHHHhh--CCCEEECCcccCCcHHHHHHHHHHHHh--hCCCeEEEE
Confidence 9999887 69998762 222 2233444454 799999986
No 341
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=93.69 E-value=2.1 Score=45.42 Aligned_cols=133 Identities=8% Similarity=0.105 Sum_probs=89.0
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCC-CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEec
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVR 319 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG-~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR 319 (540)
|+-.-+...+++++.+.++... ..| |..|-|-.|- .+++.-.+.|+++++.++ +.+.+-.-
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~-~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN 196 (365)
T cd03318 133 PVAWTLASGDTERDIAEAEEML-EAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVN 196 (365)
T ss_pred EEEEEEeCCCHHHHHHHHHHHH-hCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 3333344445554444443333 347 9999986541 134445567788888774 44555444
Q ss_pred CCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 009196 320 TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 320 ~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 399 (540)
-+| +..++.++++.|++.|+.+| +|.. .+-+|+-.+++++.. .+||.+.=.+.+.+++..++.. ..+
T Consensus 197 ~~~--~~~~A~~~~~~l~~~~~~~i-------EeP~-~~~~~~~~~~l~~~~--~~pia~dE~~~~~~~~~~~i~~-~~~ 263 (365)
T cd03318 197 QAW--DESTAIRALPRLEAAGVELI-------EQPV-PRENLDGLARLRSRN--RVPIMADESVSGPADAFELARR-GAA 263 (365)
T ss_pred CCC--CHHHHHHHHHHHHhcCccee-------eCCC-CcccHHHHHHHHhhc--CCCEEcCcccCCHHHHHHHHHh-CCC
Confidence 556 35689999999999987665 3333 234788889999887 7999987778999999998875 668
Q ss_pred Ceeee
Q 009196 400 ASCMI 404 (540)
Q Consensus 400 DgVMI 404 (540)
|.+++
T Consensus 264 d~~~~ 268 (365)
T cd03318 264 DVFSL 268 (365)
T ss_pred CeEEE
Confidence 88854
No 342
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.69 E-value=0.21 Score=55.49 Aligned_cols=71 Identities=4% Similarity=0.025 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+..+.+..|.++|++.|.|-.-.+. ...-++.|++|++.+| +++|| .|+|.|++.+..++. .|||+|-||
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~-agnv~t~~~a~~l~~--aGad~v~vg 296 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIV-AGNVVTAEGTRDLVE--AGADIVKVG 296 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEE-eeccCCHHHHHHHHH--cCCCEEEEC
Confidence 35678899999999999988533222 2245789999999987 67777 499999999999776 799998755
No 343
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.69 E-value=0.39 Score=53.05 Aligned_cols=161 Identities=12% Similarity=0.138 Sum_probs=105.6
Q ss_pred hhccCChhhhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHH
Q 009196 223 NLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302 (540)
Q Consensus 223 ~l~~g~~~e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eI 302 (540)
....|....+..++.+ ..-|+---=|=-++.++.+|. .+|+|.|=|-. ++| .++.+.++
T Consensus 93 ~~F~Gs~~~l~~vr~~-v~~PvLrKDFiid~~QI~ea~-----~~GADavLLI~--------------~~L-~~~~l~~l 151 (454)
T PRK09427 93 KYFQGSFDFLPIVRAI-VTQPILCKDFIIDPYQIYLAR-----YYGADAILLML--------------SVL-DDEQYRQL 151 (454)
T ss_pred CcCCCCHHHHHHHHHh-CCCCEEeccccCCHHHHHHHH-----HcCCCchhHHH--------------HhC-CHHHHHHH
Confidence 4445555544444433 223443221223455555543 45889887742 222 24566667
Q ss_pred HHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCC
Q 009196 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD 382 (540)
Q Consensus 303 v~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGd 382 (540)
++...+ ++.-..|-++. .. + +.++.++|+..|-|-.|.-. +-..|.+...++...+|.++.+|.-+|
T Consensus 152 ~~~a~~-lGl~~lvEvh~-----~~---E-l~~al~~~a~iiGiNnRdL~---t~~vd~~~~~~l~~~ip~~~~~vseSG 218 (454)
T PRK09427 152 AAVAHS-LNMGVLTEVSN-----EE---E-LERAIALGAKVIGINNRNLR---DLSIDLNRTRELAPLIPADVIVISESG 218 (454)
T ss_pred HHHHHH-cCCcEEEEECC-----HH---H-HHHHHhCCCCEEEEeCCCCc---cceECHHHHHHHHhhCCCCcEEEEeCC
Confidence 666543 46666665553 12 2 34456689999999888654 233577888888888887899999999
Q ss_pred CCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 383 IYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 383 I~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
|.+++|+..+ . .++|+|.||.++|..|..-..+++
T Consensus 219 I~t~~d~~~~-~--~~~davLiG~~lm~~~d~~~~~~~ 253 (454)
T PRK09427 219 IYTHAQVREL-S--PFANGFLIGSSLMAEDDLELAVRK 253 (454)
T ss_pred CCCHHHHHHH-H--hcCCEEEECHHHcCCCCHHHHHHH
Confidence 9999999885 4 359999999999999987766654
No 344
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.67 E-value=0.79 Score=47.45 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=47.5
Q ss_pred HHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
+..+.++|+|.|.+- ....+.++++.+..+.++||++.||| +.+.+.++.. +|+|+|.+|.--
T Consensus 202 a~eA~~~gaD~I~LD----------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~--tGvD~Isvg~lt 264 (277)
T PRK05742 202 LRQALAAGADIVMLD----------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAE--TGVDYISIGAMT 264 (277)
T ss_pred HHHHHHcCCCEEEEC----------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHH--cCCCEEEEChhh
Confidence 445668899999772 23445667666655337999999999 7999988765 899999999633
No 345
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.60 E-value=1.6 Score=43.05 Aligned_cols=131 Identities=14% Similarity=0.056 Sum_probs=81.5
Q ss_pred EEEEecCC----cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec
Q 009196 244 FGVQICGA----YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 319 (540)
Q Consensus 244 ~~vQL~G~----~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR 319 (540)
+..|..-. +++...+.|+.+. .+|+.++.++ + .+.++++++.+++||...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~a~~-~~G~~~~~~~--------------~---------~~~i~~i~~~~~~Pil~~~~ 64 (221)
T PRK01130 9 VSCQALPGEPLHSPEIMAAMALAAV-QGGAVGIRAN--------------G---------VEDIKAIRAVVDVPIIGIIK 64 (221)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHH-HCCCeEEEcC--------------C---------HHHHHHHHHhCCCCEEEEEe
Confidence 44555533 3466677777666 6898888873 0 35677777778999875544
Q ss_pred CCCCC-Ch--hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 009196 320 TGYFE-GK--NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 396 (540)
Q Consensus 320 ~G~~e-~~--~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 396 (540)
--+.. .. ....+.++.+.++|+++|++-.+... ...+....+++..+++. + .+|++. ++.+.+++..+..
T Consensus 65 ~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~-~p~~~~~~~~i~~~~~~-~-~i~vi~--~v~t~ee~~~a~~-- 137 (221)
T PRK01130 65 RDYPDSEVYITPTLKEVDALAAAGADIIALDATLRP-RPDGETLAELVKRIKEY-P-GQLLMA--DCSTLEEGLAAQK-- 137 (221)
T ss_pred cCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCCCHHHHHHHHHhC-C-CCeEEE--eCCCHHHHHHHHH--
Confidence 11000 00 01235678889999998888654321 00111223566777664 3 688885 6789999987554
Q ss_pred CCcCeeeec
Q 009196 397 PELASCMIA 405 (540)
Q Consensus 397 ~gaDgVMIG 405 (540)
.|+|.+.++
T Consensus 138 ~G~d~i~~~ 146 (221)
T PRK01130 138 LGFDFIGTT 146 (221)
T ss_pred cCCCEEEcC
Confidence 799999774
No 346
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.52 E-value=2.4 Score=42.60 Aligned_cols=152 Identities=7% Similarity=-0.006 Sum_probs=91.0
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc---cC-----CccccccCCchHHHHHHHHhccc
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI-----VV---NK-----GAGSCLLTKPMRMKGIIEATSGT 309 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~-----v~---~~-----G~GsaLl~~p~~l~eIv~av~~~ 309 (540)
+++.=|.+.++++..+.++.+. +.|+..|||-+--|... .+ .+ -.|+.-.-+++.+...+++
T Consensus 16 ~vi~Vvr~~~~~~a~~~~~al~-~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a---- 90 (222)
T PRK07114 16 GMVPVFYHADVEVAKKVIKACY-DGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL---- 90 (222)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc----
Confidence 4555578899999999999888 78999999987544311 00 00 0122222234433333222
Q ss_pred ccccEEEEecCCCCCC---------------hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCC
Q 009196 310 VDKPITIKVRTGYFEG---------------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDD 374 (540)
Q Consensus 310 v~iPVtVKiR~G~~e~---------------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~ 374 (540)
+--+.| ..+++.+ .-+.-++ ..+.++|++.|-+.+-. . ....|++.++.-+| +
T Consensus 91 -GA~FiV--sP~~~~~v~~~~~~~~i~~iPG~~TpsEi-~~A~~~Ga~~vKlFPA~----~---~G~~~ikal~~p~p-~ 158 (222)
T PRK07114 91 -GANFIV--TPLFNPDIAKVCNRRKVPYSPGCGSLSEI-GYAEELGCEIVKLFPGS----V---YGPGFVKAIKGPMP-W 158 (222)
T ss_pred -CCCEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHH-HHHHHCCCCEEEECccc----c---cCHHHHHHHhccCC-C
Confidence 112222 2222210 0011122 22345677777665411 1 12578999998888 7
Q ss_pred ceEEEeCCCCC-HHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 375 LQVLGNGDIYS-YLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 375 IPVIgNGdI~s-~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
+|++..|||.- .+++.+++. .|+.+|.+|+.+..+.+
T Consensus 159 i~~~ptGGV~~~~~n~~~yl~--aGa~avg~Gs~L~~~~~ 196 (222)
T PRK07114 159 TKIMPTGGVEPTEENLKKWFG--AGVTCVGMGSKLIPKEA 196 (222)
T ss_pred CeEEeCCCCCcchhcHHHHHh--CCCEEEEEChhhcCccc
Confidence 99999999973 478888887 78999999988875554
No 347
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=93.48 E-value=3.7 Score=43.17 Aligned_cols=98 Identities=6% Similarity=-0.017 Sum_probs=63.7
Q ss_pred cccCCchHHHHHHHHhcccccccEEEEec-CC-CCCC---------hhHHHHHHHHHHHcCCcEEEEecccccCccC--C
Q 009196 291 CLLTKPMRMKGIIEATSGTVDKPITIKVR-TG-YFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYS--K 357 (540)
Q Consensus 291 aLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G-~~e~---------~~~~~~la~~leeaGvdaItVHgRtr~q~y~--g 357 (540)
.+.+|-+...++++..+. .++.|-.-+- +| ..+. -.+..+..+.+++.|+|++.|.-.|..+.|. +
T Consensus 109 ~~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~ 187 (307)
T PRK05835 109 AFEENLELTSKVVKMAHN-AGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKG 187 (307)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCC
Confidence 344566666677766543 2444443331 21 1111 1123455555678999999887777777775 3
Q ss_pred --CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 009196 358 --LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 391 (540)
Q Consensus 358 --~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 391 (540)
.-+|+.+++|++.+ ++|++.-|+=-.++++.+
T Consensus 188 ~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~ 221 (307)
T PRK05835 188 EPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRK 221 (307)
T ss_pred CCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhh
Confidence 35899999999998 799999998888876433
No 348
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.46 E-value=0.23 Score=54.68 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
...+-+..|.++|++.|.|.... +.+ ..-++.|+++++.++ ++||++ |+|.|++++..++. .|||+|-+|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~---g~~-~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~--aGad~i~vg 293 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSH---GHS-IYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALID--AGADGLRVG 293 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCC---CcH-hHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHH--hCCCEEEEC
Confidence 45567778999999999985322 221 234788999999876 799998 99999999999776 799999755
No 349
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=93.44 E-value=2.4 Score=44.44 Aligned_cols=129 Identities=12% Similarity=0.144 Sum_probs=87.8
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCC
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTG 321 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G 321 (540)
|+-..+...+++.+.+.++.+. ..||..|-|..| | +.-.+.++++++.+ ++.+.+-.--+
T Consensus 123 ~~y~~~~~~~~~~~~~~a~~~~-~~Gf~~~KiKv~-~-----------------~~d~~~v~~vr~~~~~~~l~vDaN~~ 183 (324)
T TIGR01928 123 PAGAVSGLANDEQMLKQIESLK-ATGYKRIKLKIT-P-----------------QIMHQLVKLRRLRFPQIPLVIDANES 183 (324)
T ss_pred EEeEEcCCCCHHHHHHHHHHHH-HcCCcEEEEEeC-C-----------------chhHHHHHHHHHhCCCCcEEEECCCC
Confidence 3433455567788777777665 459999988643 1 11235677777766 33444444445
Q ss_pred CCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCe
Q 009196 322 YFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 401 (540)
Q Consensus 322 ~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDg 401 (540)
|+. ..+ ..++.|++.++.+| +|.. .+-+|+-.+++++.+ ++||.+.=.+.++.++..++.. ..+|.
T Consensus 184 ~~~--~~a-~~~~~l~~~~~~~i-------EeP~-~~~~~~~~~~l~~~~--~~pia~dEs~~~~~~~~~~~~~-~~~dv 249 (324)
T TIGR01928 184 YDL--QDF-PRLKELDRYQLLYI-------EEPF-KIDDLSMLDELAKGT--ITPICLDESITSLDDARNLIEL-GNVKV 249 (324)
T ss_pred CCH--HHH-HHHHHHhhCCCcEE-------ECCC-ChhHHHHHHHHHhhc--CCCEeeCCCcCCHHHHHHHHHc-CCCCE
Confidence 643 333 56888998887776 3333 234688889999988 6999998889999999998875 77888
Q ss_pred eee
Q 009196 402 CMI 404 (540)
Q Consensus 402 VMI 404 (540)
+++
T Consensus 250 i~~ 252 (324)
T TIGR01928 250 INI 252 (324)
T ss_pred EEe
Confidence 864
No 350
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=93.40 E-value=2.3 Score=41.63 Aligned_cols=137 Identities=11% Similarity=0.007 Sum_probs=79.1
Q ss_pred EEec--CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEE--EEecC-
Q 009196 246 VQIC--GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT--IKVRT- 320 (540)
Q Consensus 246 vQL~--G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVt--VKiR~- 320 (540)
+-++ ++.+..++ +.+. ++|+|.|-+|.-++ .+.+.++++.+++. +.++. ++...
T Consensus 60 ~k~~di~~~~~~~~---~~~~-~~gad~vtvh~e~g----------------~~~l~~~i~~~~~~-g~~~~v~~~~~~~ 118 (215)
T PRK13813 60 LKVADIPNTNRLIC---EAVF-EAGAWGIIVHGFTG----------------RDSLKAVVEAAAES-GGKVFVVVEMSHP 118 (215)
T ss_pred eeccccHHHHHHHH---HHHH-hCCCCEEEEcCcCC----------------HHHHHHHHHHHHhc-CCeEEEEEeCCCC
Confidence 4553 44555444 3344 57999999985322 12355666666643 45553 33321
Q ss_pred C-CCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCH-HHHHHHHhcCCC
Q 009196 321 G-YFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSY-LDWNKHKSDCPE 398 (540)
Q Consensus 321 G-~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~-eDa~~~l~~~~g 398 (540)
+ ...-...+..++....+.|.+...+.. ...+.+.++++..+.++.+ ..|+|..- ..+..++. .|
T Consensus 119 ~~~~~~~~~~~~v~~m~~e~G~~g~~~~~----------~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~--aG 185 (215)
T PRK13813 119 GALEFIQPHADKLAKLAQEAGAFGVVAPA----------TRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIK--AG 185 (215)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEECC----------CcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHH--cC
Confidence 0 111123455666667788988775321 1235567777766422334 77898763 13556555 79
Q ss_pred cCeeeecHHHHhCCCchH
Q 009196 399 LASCMIARGALIKPWIFT 416 (540)
Q Consensus 399 aDgVMIGRgaL~nPwif~ 416 (540)
+|++.+||+++..+..-+
T Consensus 186 ad~iV~Gr~I~~~~d~~~ 203 (215)
T PRK13813 186 ADYVIVGRSIYNAADPRE 203 (215)
T ss_pred CCEEEECcccCCCCCHHH
Confidence 999999999887765433
No 351
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=93.35 E-value=1.7 Score=44.57 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=90.1
Q ss_pred CCCCCCHHHHHHHHHhCCCEEEeccceechhccCChhhhh-----------hhhcccCC------CeEEEEecCCcHHHH
Q 009196 194 LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA-----------LLRRHSSE------DLFGVQICGAYPDTL 256 (540)
Q Consensus 194 M~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g~~~e~~-----------ll~~~~~e------~p~~vQL~G~~p~~~ 256 (540)
|.|.-|.||-++....|+|++.-.-.. .-.+.|..++.. -+++.... -||+- +..++++.
T Consensus 19 ~lTAYD~~~A~~~d~agvd~lLVGDSl-gmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~DmPF~s--y~~s~~~a 95 (268)
T COG0413 19 MLTAYDYPFAKLFDQAGVDVLLVGDSL-GMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVADLPFGS--YEVSPEQA 95 (268)
T ss_pred EEeccccHHHhhhhhcCCcEEEEeccH-HHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEEeCCCCcc--cCCCHHHH
Confidence 346779999999999999976421000 001223332211 11222222 23322 34455555
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC---------CCC----
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---------GYF---- 323 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~---------G~~---- 323 (540)
.+.|.++.++.|+|.|-|-. | ..+.++|+.+.+. ++||.-=+-+ |+.
T Consensus 96 ~~nA~r~~ke~gA~aVKlEG------------G-------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGykvqGr 155 (268)
T COG0413 96 LKNAARLMKEAGADAVKLEG------------G-------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGYKVQGR 155 (268)
T ss_pred HHHHHHHHHHhCCCEEEEcC------------C-------HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCeeeecC
Confidence 55554444478999999852 2 3455666666553 7888765432 111
Q ss_pred --CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC
Q 009196 324 --EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 381 (540)
Q Consensus 324 --e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG 381 (540)
+......+-++.|+++|+-+|.+-+-. -+..++|.+.+ +||+||-|
T Consensus 156 ~~~~a~~l~~dA~ale~AGaf~ivlE~Vp----------~~lA~~IT~~l--siPtIGIG 203 (268)
T COG0413 156 TEESAEKLLEDAKALEEAGAFALVLECVP----------AELAKEITEKL--SIPTIGIG 203 (268)
T ss_pred CHHHHHHHHHHHHHHHhcCceEEEEeccH----------HHHHHHHHhcC--CCCEEeec
Confidence 112356667788999999999985321 24667888888 79999988
No 352
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.24 E-value=2.1 Score=44.10 Aligned_cols=129 Identities=11% Similarity=0.038 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHH
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~ 330 (540)
-+.+.+.+-++.+. ..|+|+|=++. ..|-...-..+.-.++++.+++.++ +|.+-+-. .+..++.
T Consensus 17 iD~~~~~~li~~l~-~~Gv~Gl~~~G----------stGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg~---~~~~~ai 81 (279)
T cd00953 17 IDKEKFKKHCENLI-SKGIDYVFVAG----------TTGLGPSLSFQEKLELLKAYSDITD-KVIFQVGS---LNLEESI 81 (279)
T ss_pred cCHHHHHHHHHHHH-HcCCcEEEEcc----------cCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeCc---CCHHHHH
Confidence 46788888888887 67999998873 2233222233333445555544443 35553321 2467899
Q ss_pred HHHHHHHHcCCcEEEEecccccCccCCC----cCHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcC
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYSKL----ADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~g~----adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaD 400 (540)
++++.++++|+|++.+.. ..|..+ .-.+|...+.+ ++||+ ..|--.+++.+.++.+....+-
T Consensus 82 ~~a~~a~~~Gad~v~v~~----P~y~~~~~~~~i~~yf~~v~~----~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vv 153 (279)
T cd00953 82 ELARAAKSFGIYAIASLP----PYYFPGIPEEWLIKYFTDISS----PYPTFIYNYPKATGYDINARMAKEIKKAGGDII 153 (279)
T ss_pred HHHHHHHHcCCCEEEEeC----CcCCCCCCHHHHHHHHHHHHh----cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEE
Confidence 999999999999999853 223221 22456677766 36665 2455567888877654324444
Q ss_pred ee
Q 009196 401 SC 402 (540)
Q Consensus 401 gV 402 (540)
||
T Consensus 154 gi 155 (279)
T cd00953 154 GV 155 (279)
T ss_pred EE
Confidence 43
No 353
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.23 E-value=2.7 Score=43.66 Aligned_cols=201 Identities=18% Similarity=0.072 Sum_probs=120.7
Q ss_pred CCcEEEccCCCCCCHHHHHHHHHhCCCEEEeccceec-hhcc--CChhhhhhh----h--cccCCCeEEEEec---CCcH
Q 009196 186 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCT-NLLQ--GQASEWALL----R--RHSSEDLFGVQIC---GAYP 253 (540)
Q Consensus 186 knrliLAPM~~vtdlpfR~l~~~~Gadl~~TEmi~a~-~l~~--g~~~e~~ll----~--~~~~e~p~~vQL~---G~~p 253 (540)
++.+++.| ++=|..--+++.+.|...+|+--..+. .+.. ++..+|..+ + ....+-|+.|-+= |. +
T Consensus 16 ~~~~~~~p--g~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~ 92 (289)
T COG2513 16 SGDPLVLP--GAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-A 92 (289)
T ss_pred CCCCEEec--CCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-H
Confidence 34455555 666777788888999877766543322 2222 122223211 1 1234567777664 44 7
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCC--CCChhHHH
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY--FEGKNRID 330 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~--~e~~~~~~ 330 (540)
...++.++.+. ++|+.+|.|-=- -.++.+..--|..|. .++.+.+=|++++++. +.++.+=-|+-. .+..++++
T Consensus 93 ~nvartV~~~~-~aG~agi~iEDq-~~pk~cgh~~gk~l~-~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI 169 (289)
T COG2513 93 LNVARTVRELE-QAGAAGIHIEDQ-VGPKRCGHLPGKELV-SIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAI 169 (289)
T ss_pred HHHHHHHHHHH-HcCcceeeeeec-ccchhcCCCCCCCcC-CHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHH
Confidence 78888888887 789999887410 000111111233333 3444455555555554 567777667611 12356788
Q ss_pred HHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEe----CC--CCCHHHHHHHHhcCCCcCeeee
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN----GD--IYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgN----Gd--I~s~eDa~~~l~~~~gaDgVMI 404 (540)
+=++...++|+|+|-.++.+ +.+.+.++.+++ ++|+.+| |. ..|.++ |++ .|+..|..
T Consensus 170 ~Ra~AY~eAGAD~if~~al~---------~~e~i~~f~~av--~~pl~~N~t~~g~tp~~~~~~----L~~-~Gv~~V~~ 233 (289)
T COG2513 170 ERAQAYVEAGADAIFPEALT---------DLEEIRAFAEAV--PVPLPANITEFGKTPLLTVAE----LAE-LGVKRVSY 233 (289)
T ss_pred HHHHHHHHcCCcEEccccCC---------CHHHHHHHHHhc--CCCeeeEeeccCCCCCcCHHH----HHh-cCceEEEE
Confidence 88899999999999988653 357889999988 4666555 33 455544 343 78999998
Q ss_pred cHHH
Q 009196 405 ARGA 408 (540)
Q Consensus 405 GRga 408 (540)
|-.+
T Consensus 234 ~~~~ 237 (289)
T COG2513 234 GLTA 237 (289)
T ss_pred CcHH
Confidence 8444
No 354
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=93.17 E-value=2.5 Score=43.75 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=94.2
Q ss_pred CCCeEEEEecCC-cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 240 SEDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 240 ~e~p~~vQL~G~-~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
...|+.++|=+. +.+...+|. .+||+-|-+- |..-.+..|-+...++++.++.. ++.|-.-+
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai-----~~GftSVMiD-----------~S~l~~eeNi~~t~~vv~~ah~~-gv~VEaEl 130 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAI-----RAGFSSVMID-----------GSHLPFEENVAKTKEVVELAHAY-GVSVEAEL 130 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHH-----HhCCCEEEeC-----------CCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 355777777655 444444432 3577777664 33333556677777777776553 44443332
Q ss_pred c-C-CCCCC-------hhHHHHHHHHHHHcCCcEEEEecccccCccCC---CcCHHHHHHHHHHcCCCceEEEeCCCCCH
Q 009196 319 R-T-GYFEG-------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK---LADWDYIYQCARKASDDLQVLGNGDIYSY 386 (540)
Q Consensus 319 R-~-G~~e~-------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g---~adw~~I~~i~~~~~~~IPVIgNGdI~s~ 386 (540)
- + |-.+. -.+..+....+++.|+|+|.+.-.|..+.|.+ ..+|+.+++|.+.+ ++|++.-|+=-.+
T Consensus 131 G~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~ 208 (276)
T cd00947 131 GRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIP 208 (276)
T ss_pred eeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCC
Confidence 1 1 11111 11234445556678999998877666667744 35899999999999 7999998887776
Q ss_pred HH-HHHHHhcCCCcCeeeecHHHH
Q 009196 387 LD-WNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 387 eD-a~~~l~~~~gaDgVMIGRgaL 409 (540)
++ +.+++. .|+.=|=|++.+.
T Consensus 209 ~e~~~~ai~--~Gi~KiNi~T~l~ 230 (276)
T cd00947 209 DEQIRKAIK--LGVCKININTDLR 230 (276)
T ss_pred HHHHHHHHH--cCCeEEEeChHHH
Confidence 54 666665 6787777777653
No 355
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.14 E-value=1 Score=47.94 Aligned_cols=142 Identities=10% Similarity=0.111 Sum_probs=80.5
Q ss_pred HHHHHHhCCCCEEEecCCC-CCcccccCCccccc-cCCchHHHHHHHHhcccccccEEEEe---cCCCC---------CC
Q 009196 260 VELIDQQCTVDFIDINMGC-PIDIVVNKGAGSCL-LTKPMRMKGIIEATSGTVDKPITIKV---RTGYF---------EG 325 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GC-P~~~v~~~G~GsaL-l~~p~~l~eIv~av~~~v~iPVtVKi---R~G~~---------e~ 325 (540)
++.+. +.|+|+|=+++-. |- ....+ ......+.+|.+.+++ .++|+.+=+ ..|.. ..
T Consensus 112 ve~a~-~~GAdAVk~lv~~~~d-------~~~~~~~~~~~~l~rv~~ec~~-~giPlllE~l~y~~~~~~~~~~~~a~~~ 182 (340)
T PRK12858 112 VRRIK-EAGADAVKLLLYYRPD-------EDDAINDRKHAFVERVGAECRA-NDIPFFLEPLTYDGKGSDKKAEEFAKVK 182 (340)
T ss_pred HHHHH-HcCCCEEEEEEEeCCC-------cchHHHHHHHHHHHHHHHHHHH-cCCceEEEEeccCCCccccccccccccC
Confidence 45555 6799998775311 11 00000 0122345556555543 489988742 11111 12
Q ss_pred hhHHHHHHHHHHH--cCCcEEEEec----ccc------cCccCCCcCHHHHHHHHHHcCCCceEEE-eCCCCCHHHHHHH
Q 009196 326 KNRIDSLIADIGT--WGASAVTVHG----RTR------QQRYSKLADWDYIYQCARKASDDLQVLG-NGDIYSYLDWNKH 392 (540)
Q Consensus 326 ~~~~~~la~~lee--aGvdaItVHg----Rtr------~q~y~g~adw~~I~~i~~~~~~~IPVIg-NGdI~s~eDa~~~ 392 (540)
.+.+...++.+.+ .|||.+-+-- ... +.-|+...-.+.++++.+.. ++|+|. +|++ +.+++.+.
T Consensus 183 p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~ 259 (340)
T PRK12858 183 PEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRT 259 (340)
T ss_pred HHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHH
Confidence 2456667777774 9999997621 111 11122222235677777777 588775 7787 76777665
Q ss_pred Hhc--CCCc--CeeeecHHHHhCCC
Q 009196 393 KSD--CPEL--ASCMIARGALIKPW 413 (540)
Q Consensus 393 l~~--~~ga--DgVMIGRgaL~nPw 413 (540)
+.. ..|+ .||.+||....++-
T Consensus 260 l~~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 260 LEFACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHHHHcCCCccchhhhHHHHhhhh
Confidence 542 2789 99999999877653
No 356
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.10 E-value=0.49 Score=48.33 Aligned_cols=92 Identities=13% Similarity=0.155 Sum_probs=67.0
Q ss_pred cccEEEEe--c---CCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCC
Q 009196 311 DKPITIKV--R---TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS 385 (540)
Q Consensus 311 ~iPVtVKi--R---~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s 385 (540)
++||..-+ + .||-....+..++|+.++++|+++|.|.. ....+.+ +++.+..+++.+ ++||+.--=|.+
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt--e~~~f~g--~~~~l~~v~~~v--~iPvl~kdfi~~ 122 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT--DERFFQG--SLEYLRAARAAV--SLPVLRKDFIID 122 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec--ccccCCC--CHHHHHHHHHhc--CCCEEeeeecCC
Confidence 46775444 2 25544445678999999999999998853 2233333 478999999988 799998777778
Q ss_pred HHHHHHHHhcCCCcCeeeecHHHHh
Q 009196 386 YLDWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 386 ~eDa~~~l~~~~gaDgVMIGRgaL~ 410 (540)
+.++.++.. .|||+|.+.=.++.
T Consensus 123 ~~qi~~a~~--~GAD~VlLi~~~l~ 145 (260)
T PRK00278 123 PYQIYEARA--AGADAILLIVAALD 145 (260)
T ss_pred HHHHHHHHH--cCCCEEEEEeccCC
Confidence 888888776 79999977655553
No 357
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=93.10 E-value=1.8 Score=47.59 Aligned_cols=123 Identities=10% Similarity=0.060 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~ 330 (540)
+++.+++-|+....+.||..|-|-.|-+ +++.-.+.|+++++++ ++.+.|-.-.+| +..+++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~w--t~~~Ai 242 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAW--SLDEAI 242 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCC--CHHHHH
Confidence 5677766555433245999998865421 2345567788888776 345555555566 356799
Q ss_pred HHHHHHHHcCCcEEEEecccccCccCCCcC----HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYSKLAD----WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~g~ad----w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
.+++.|++. +.+| +|.. .+-+ ++..+++++.+ ++||.+.=.+.++.++..++.. ..+|.++
T Consensus 243 ~~~~~Le~~-~~~i-------EePv-~~~d~~~~~~~la~Lr~~~--~iPIa~dEs~~~~~~~~~li~~-~avdi~~ 307 (441)
T TIGR03247 243 ALCKDLKGV-LAYA-------EDPC-GAEQGYSGREVMAEFRRAT--GLPTATNMIATDWRQMGHALQL-QAVDIPL 307 (441)
T ss_pred HHHHHhhhh-hceE-------eCCC-CcccccchHHHHHHHHHhC--CCCEEcCCccCCHHHHHHHHHh-CCCCEEe
Confidence 999999886 5433 4443 2234 78889999988 7999988888899999998875 6777754
No 358
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=93.09 E-value=1.1 Score=44.93 Aligned_cols=140 Identities=13% Similarity=0.045 Sum_probs=79.7
Q ss_pred eEEEEe--cCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEec
Q 009196 243 LFGVQI--CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVR 319 (540)
Q Consensus 243 p~~vQL--~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR 319 (540)
++=+-+ .++.+..+.+. +. ++|+|.|-+|+..+ .+-+...+++.++.. ..-+.|=+-
T Consensus 57 ~~D~Kl~Di~~t~~~~i~~---~~-~~gad~itvH~~ag----------------~~~i~~~~~~~~~~~~~~~~~V~~l 116 (230)
T PRK00230 57 FLDLKLHDIPNTVAKAVRA---LA-KLGVDMVNVHASGG----------------PRMMKAAREALEPKSRPLLIAVTVL 116 (230)
T ss_pred EEEeehhhccccHHHHHHH---HH-HcCCCEEEEcccCC----------------HHHHHHHHHHhhccCCCeEEEEEEC
Confidence 334566 56777665444 44 67999999995433 223334444433210 112222222
Q ss_pred CCCCC----------C-hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHH-
Q 009196 320 TGYFE----------G-KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL- 387 (540)
Q Consensus 320 ~G~~e----------~-~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~e- 387 (540)
+.+.. + ......+++...+.|++.+...+ ..+..+++..+ .-.++..+||. ++
T Consensus 117 ts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~-------------~~~~~ir~~~~-~~~~~v~pGI~-~~g 181 (230)
T PRK00230 117 TSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSA-------------QEAAAIREATG-PDFLLVTPGIR-PAG 181 (230)
T ss_pred CCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeCh-------------HHHHHHHhhcC-CceEEEcCCcC-CCC
Confidence 22210 0 12344667777889999887642 12455666554 33456678885 33
Q ss_pred ----------HHHHHHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 388 ----------DWNKHKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 388 ----------Da~~~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
...+++. .|+|+|+|||+.+..+.-...++
T Consensus 182 ~~~~dq~~~~~~~~ai~--~Gad~iVvGR~I~~a~dP~~~a~ 221 (230)
T PRK00230 182 SDAGDQKRVMTPAQAIA--AGSDYIVVGRPITQAADPAAAYE 221 (230)
T ss_pred CCcchHHHHhCHHHHHH--cCCCEEEECCcccCCCCHHHHHH
Confidence 4555564 79999999999998777655544
No 359
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.08 E-value=0.36 Score=52.45 Aligned_cols=70 Identities=7% Similarity=-0.028 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+..+.++.|.++|+|.|.|-.-. +. +..-++.++++++.+| +++| ..|+|.|++++..++. .|||+|.+|
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~---g~-~~~~~~~v~~ik~~~p-~~~v-i~g~V~T~e~a~~l~~--aGaD~I~vG 222 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAH---GH-STRIIELVKKIKTKYP-NLDL-IAGNIVTKEAALDLIS--VGADCLKVG 222 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---CC-ChhHHHHHHHHHhhCC-CCcE-EEEecCCHHHHHHHHH--cCCCEEEEC
Confidence 46788999999999999985322 11 2234678999999887 5774 4689999999999776 799999887
No 360
>PLN02535 glycolate oxidase
Probab=93.06 E-value=0.85 Score=49.02 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=37.2
Q ss_pred CCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 356 SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 356 ~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+...|+.|+.+++.. ++|||. .+|.+++|+..+++ .|+|+|.+.
T Consensus 207 ~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~--~GvD~I~vs 251 (364)
T PLN02535 207 DASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVE--VGVAGIIVS 251 (364)
T ss_pred CCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHh--cCCCEEEEe
Confidence 3456899999999987 699885 66789999998776 799999774
No 361
>PRK06256 biotin synthase; Validated
Probab=93.05 E-value=1.1 Score=46.92 Aligned_cols=138 Identities=9% Similarity=-0.047 Sum_probs=83.2
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
++.+. ++|++.|.+|+=. .+.+...-... ...+...+.++.+++ .++++.+-+=.|..++.++..+++..+.+.
T Consensus 155 l~~Lk-eaG~~~v~~~lEt-s~~~~~~i~~~---~t~~~~i~~i~~a~~-~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l 228 (336)
T PRK06256 155 AERLK-EAGVDRYNHNLET-SRSYFPNVVTT---HTYEDRIDTCEMVKA-AGIEPCSGGIIGMGESLEDRVEHAFFLKEL 228 (336)
T ss_pred HHHHH-HhCCCEEecCCcc-CHHHHhhcCCC---CCHHHHHHHHHHHHH-cCCeeccCeEEeCCCCHHHHHHHHHHHHhC
Confidence 34455 6899999888655 44333211111 234555566666655 366666655556667778899999999999
Q ss_pred CCcEEEEeccc-----ccCccCCCcCHHHHH---HHHHHcCCCceEEEeCCC-CCHHHHHHHHhcCCCcCeeeecH
Q 009196 340 GASAVTVHGRT-----RQQRYSKLADWDYIY---QCARKASDDLQVLGNGDI-YSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 340 GvdaItVHgRt-----r~q~y~g~adw~~I~---~i~~~~~~~IPVIgNGdI-~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
|++.+.++.-+ .-.........++++ .++-..| +..|...|+= ....+...+.. .||+++|+|=
T Consensus 229 ~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p-~~~I~~~~gr~~~~~~~~~~~~--~g~~~~~~g~ 301 (336)
T PRK06256 229 DADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINP-DKEIRIAGGREVNLRSLQPLGL--GGANSVIVGN 301 (336)
T ss_pred CCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCeeEecCchhhhchhhHHHHh--ccCceeeECC
Confidence 99999887432 211111222344443 3333455 5667555554 55666655443 5999999993
No 362
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.98 E-value=2.9 Score=44.13 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=85.4
Q ss_pred eEEEEecCCcH-HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc-ccEEEEecC
Q 009196 243 LFGVQICGAYP-DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD-KPITIKVRT 320 (540)
Q Consensus 243 p~~vQL~G~~p-~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~-iPVtVKiR~ 320 (540)
|+...+...++ +.+.+.++.+. +.||..|-|..| +..-.+.|++|++.++ +.+.+-.--
T Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~~-~~Gf~~~KiKv~------------------~~~d~~~l~~vr~~~g~~~l~lDaN~ 187 (354)
T cd03317 127 PVGVSIGIQDDVEQLLKQIERYL-EEGYKRIKLKIK------------------PGWDVEPLKAVRERFPDIPLMADANS 187 (354)
T ss_pred EeeEEEeCCCcHHHHHHHHHHHH-HcCCcEEEEecC------------------hHHHHHHHHHHHHHCCCCeEEEECCC
Confidence 34333433333 66666666665 459999988753 1223456777777663 334443344
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
+|+. ..+ .+++.|++.++.+| +|.. .+.+|+-.+++++.. ++||.+.=.+.+.+++..++.. ..+|
T Consensus 188 ~~~~--~~a-~~~~~l~~~~i~~i-------EeP~-~~~d~~~~~~l~~~~--~~pia~dEs~~~~~~~~~~~~~-~~~d 253 (354)
T cd03317 188 AYTL--ADI-PLLKRLDEYGLLMI-------EQPL-AADDLIDHAELQKLL--KTPICLDESIQSAEDARKAIEL-GACK 253 (354)
T ss_pred CCCH--HHH-HHHHHhhcCCccEE-------ECCC-ChhHHHHHHHHHhhc--CCCEEeCCccCCHHHHHHHHHc-CCCC
Confidence 5643 445 47888888877666 3433 335688888999888 6999988889999999998875 6778
Q ss_pred eeee
Q 009196 401 SCMI 404 (540)
Q Consensus 401 gVMI 404 (540)
.|.+
T Consensus 254 ~~~i 257 (354)
T cd03317 254 IINI 257 (354)
T ss_pred EEEe
Confidence 8876
No 363
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.98 E-value=2.3 Score=42.21 Aligned_cols=173 Identities=13% Similarity=0.190 Sum_probs=100.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCc------cccccCC--chHHHHHHHHhccc-ccccEEEEecCC
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA------GSCLLTK--PMRMKGIIEATSGT-VDKPITIKVRTG 321 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~------GsaLl~~--p~~l~eIv~av~~~-v~iPVtVKiR~G 321 (540)
.+.++-+++.+-+. .+|.|.||| |-|..-...+|- --+|++. ...+.++++.++.. +.+|+.. +|
T Consensus 29 P~v~~T~kilkglq-~gG~dIIEL--GvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiL---mg 102 (268)
T KOG4175|consen 29 PDVSTTAKILKGLQ-SGGSDIIEL--GVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIIL---MG 102 (268)
T ss_pred CcHHHHHHHHHHHh-cCCcCeEEe--cCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceee---ee
Confidence 34567777777776 789999999 666654433332 1234443 34566777776665 5677654 34
Q ss_pred CCCCh--hHHHHHHHHHHHcCCcEEEE-------------------------ecc-ccc-------------------Cc
Q 009196 322 YFEGK--NRIDSLIADIGTWGASAVTV-------------------------HGR-TRQ-------------------QR 354 (540)
Q Consensus 322 ~~e~~--~~~~~la~~leeaGvdaItV-------------------------HgR-tr~-------------------q~ 354 (540)
+.... .-...+++.+.++|+..+.| ..- |.. .+
T Consensus 103 YYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG 182 (268)
T KOG4175|consen 103 YYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMG 182 (268)
T ss_pred cccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEecc
Confidence 33211 01123444445555555443 211 100 01
Q ss_pred cCCCc-----C-HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCH
Q 009196 355 YSKLA-----D-WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITS 428 (540)
Q Consensus 355 y~g~a-----d-w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~ 428 (540)
.+|.. + -+.+.++++... +.|+-..=||.++|.+.+ +. .-+|||.||..... +.- +-.+
T Consensus 183 ~TG~~~svn~~l~~L~qrvrk~t~-dtPlAVGFGvst~EHf~q-Vg--svaDGVvvGSkiv~-------l~g----~ae~ 247 (268)
T KOG4175|consen 183 VTGTRESVNEKLQSLLQRVRKATG-DTPLAVGFGVSTPEHFKQ-VG--SVADGVVVGSKIVK-------LLG----EAES 247 (268)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcC-CCceeEeeccCCHHHHHh-hh--hhccceEecHHHHH-------Hhc----cCCC
Confidence 11210 1 245677888775 799998889999999988 44 35999999987642 111 1123
Q ss_pred HHHHHHHHHHHHHHHH
Q 009196 429 GERLNIMKDFARFGLE 444 (540)
Q Consensus 429 ~erl~il~~~~~~~le 444 (540)
.++....++|+.+.+.
T Consensus 248 g~~~~v~~Ey~~~~lk 263 (268)
T KOG4175|consen 248 GEQGLVELEYFTKSLK 263 (268)
T ss_pred ccchhHHHHHHHHHhh
Confidence 5667777788776553
No 364
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=92.95 E-value=1.3 Score=45.38 Aligned_cols=130 Identities=21% Similarity=0.205 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
+.+.+.+-++.+. ..|+|+|=++.. .|-...-..+.-.++++.+.+.+ ++||.+-+-. .+..++
T Consensus 20 d~~~~~~~i~~l~-~~Gv~gl~~~Gs----------tGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~---~st~~~ 85 (289)
T PF00701_consen 20 DEDALKRLIDFLI-EAGVDGLVVLGS----------TGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA---NSTEEA 85 (289)
T ss_dssp -HHHHHHHHHHHH-HTTSSEEEESST----------TTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES---SSHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCC----------CcccccCCHHHHHHHHHHHHHHccCceEEEecCcc---hhHHHH
Confidence 5677888888777 579999988631 22222222333344555555544 5788886543 256789
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCc---CHHHHHHHHHHcCCCceEE-Ee-----CCCCCHHHHHHHHhcCCCcC
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLA---DWDYIYQCARKASDDLQVL-GN-----GDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~a---dw~~I~~i~~~~~~~IPVI-gN-----GdI~s~eDa~~~l~~~~gaD 400 (540)
+++++.++++|+|++.+..= .|..+. -.+|+..|++.+ ++||+ .| |--.+++.+.++.. .+++-
T Consensus 86 i~~a~~a~~~Gad~v~v~~P----~~~~~s~~~l~~y~~~ia~~~--~~pi~iYn~P~~tg~~ls~~~l~~L~~-~~nv~ 158 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIPP----YYFKPSQEELIDYFRAIADAT--DLPIIIYNNPARTGNDLSPETLARLAK-IPNVV 158 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEES----TSSSCCHHHHHHHHHHHHHHS--SSEEEEEEBHHHHSSTSHHHHHHHHHT-STTEE
T ss_pred HHHHHHHhhcCceEEEEecc----ccccchhhHHHHHHHHHHhhc--CCCEEEEECCCccccCCCHHHHHHHhc-CCcEE
Confidence 99999999999999988532 222222 257788888777 67866 33 55557777777554 35544
Q ss_pred ee
Q 009196 401 SC 402 (540)
Q Consensus 401 gV 402 (540)
|+
T Consensus 159 gi 160 (289)
T PF00701_consen 159 GI 160 (289)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 365
>PLN02979 glycolate oxidase
Probab=92.93 E-value=0.93 Score=48.65 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=37.1
Q ss_pred CCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 356 SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 356 ~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+...|+.++.+++.. ++|||.-| |.+.+|+..+++ .|||+|.|+
T Consensus 207 ~~~ltW~dl~wlr~~~--~~PvivKg-V~~~~dA~~a~~--~Gvd~I~Vs 251 (366)
T PLN02979 207 DRTLSWKDVQWLQTIT--KLPILVKG-VLTGEDARIAIQ--AGAAGIIVS 251 (366)
T ss_pred CCCCCHHHHHHHHhcc--CCCEEeec-CCCHHHHHHHHh--cCCCEEEEC
Confidence 3456799999999988 79988655 679999999776 799999774
No 366
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=92.92 E-value=2.5 Score=44.37 Aligned_cols=123 Identities=7% Similarity=0.021 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHHH
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~~ 330 (540)
++.+.+.++.+. ..||..+-|..|- ..++.-.+.|+++++++ ++.+.|-.--+| +...+.
T Consensus 119 ~~~~~~~a~~~~-~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~w--~~~~A~ 180 (320)
T PRK02714 119 GEAALQQWQTLW-QQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANGGL--SLEEAK 180 (320)
T ss_pred CHHHHHHHHHHH-HcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCCCC--CHHHHH
Confidence 355666665554 4599988885331 23555567788888877 455666555567 346788
Q ss_pred HHHHHHHH---cCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 331 SLIADIGT---WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 331 ~la~~lee---aGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
.+++.|++ .++.+| +|.. ...+++-.+.+++.+ ++||.+.=.+.++.|+..++.. ..+|.|.+
T Consensus 181 ~~~~~l~~l~~~~i~~i-------EqP~-~~~~~~~~~~l~~~~--~~Pia~DEs~~~~~d~~~~~~~-~a~d~v~i 246 (320)
T PRK02714 181 RWLQLCDRRLSGKIEFI-------EQPL-PPDQFDEMLQLSQDY--QTPIALDESVANLAQLQQCYQQ-GWRGIFVI 246 (320)
T ss_pred HHHHHHhhccCCCccEE-------ECCC-CcccHHHHHHHHHhC--CCCEEECCccCCHHHHHHHHHc-CCCCEEEE
Confidence 99999987 466655 4443 234788889999888 7999999999999999998875 56666653
No 367
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.92 E-value=0.67 Score=49.08 Aligned_cols=101 Identities=8% Similarity=0.080 Sum_probs=64.6
Q ss_pred cccC-CchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCC--cEEEEecccccCccCCCcCHHHHHHH
Q 009196 291 CLLT-KPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGA--SAVTVHGRTRQQRYSKLADWDYIYQC 367 (540)
Q Consensus 291 aLl~-~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGv--daItVHgRtr~q~y~g~adw~~I~~i 367 (540)
.+.+ +++.....++.++. ..+.|-+..|.. .+..+-+..|.++|+ |.|.|..-. .+ ...-.+.|+++
T Consensus 65 ~~~k~~~e~~~~~~r~~~~---~~l~v~~~vg~~---~~~~~~~~~Lv~ag~~~d~i~iD~a~---gh-~~~~~e~I~~i 134 (326)
T PRK05458 65 IMHRFDPEARIPFIKDMHE---QGLIASISVGVK---DDEYDFVDQLAAEGLTPEYITIDIAH---GH-SDSVINMIQHI 134 (326)
T ss_pred EEecCCHHHHHHHHHhccc---cccEEEEEecCC---HHHHHHHHHHHhcCCCCCEEEEECCC---Cc-hHHHHHHHHHH
Confidence 3455 66665555554432 233455555542 234566777888855 999993211 10 11234679999
Q ss_pred HHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 368 ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 368 ~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
++..| ++||| .|+|.|++++..+.. .|||++.+|
T Consensus 135 r~~~p-~~~vi-~g~V~t~e~a~~l~~--aGad~i~vg 168 (326)
T PRK05458 135 KKHLP-ETFVI-AGNVGTPEAVRELEN--AGADATKVG 168 (326)
T ss_pred HhhCC-CCeEE-EEecCCHHHHHHHHH--cCcCEEEEC
Confidence 99886 46655 578999999988665 799999877
No 368
>PRK07360 FO synthase subunit 2; Reviewed
Probab=92.87 E-value=0.94 Score=48.59 Aligned_cols=151 Identities=15% Similarity=0.092 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEE-----------eCCCCCHHHHHHHH
Q 009196 325 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLG-----------NGDIYSYLDWNKHK 393 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIg-----------NGdI~s~eDa~~~l 393 (540)
+.+++.+.|+.+.+.|+..+.+.+...........-.+.++.+++.++ .+.+.+ +.|+.+.+.+.+ |
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~-~i~i~a~s~~ei~~~~~~~G~~~~e~l~~-L 169 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFP-DIHLHAFSPMEVYFAAREDGLSYEEVLKA-L 169 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCC-CcceeeCCHHHHHHHHhhcCCCHHHHHHH-H
Confidence 346788999999999999999876422111000011245666776654 577776 567767666666 5
Q ss_pred hcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhCC-
Q 009196 394 SDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIP- 472 (540)
Q Consensus 394 ~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ryip- 472 (540)
.+ .|+|.+--+..-+.++.+...+. +-..|..+|++.++.-.+.+++.--.--.|+..+.....+.+.++.+.-+
T Consensus 170 ke-AGld~~~~t~~e~l~~~vr~~i~---p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~ 245 (371)
T PRK07360 170 KD-AGLDSMPGTAAEILVDEVRRIIC---PEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQE 245 (371)
T ss_pred HH-cCCCcCCCcchhhccHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhchh
Confidence 55 89999852222223444444332 22347789999999888887764322234555555555555555444321
Q ss_pred -Ccccccccc
Q 009196 473 -VGLLDVIPQ 481 (540)
Q Consensus 473 -~glle~~p~ 481 (540)
.|+...+|.
T Consensus 246 ~~g~~~fIp~ 255 (371)
T PRK07360 246 TGGITEFVPL 255 (371)
T ss_pred hCCeeEEEec
Confidence 344455554
No 369
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=92.73 E-value=4.2 Score=42.37 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=76.5
Q ss_pred CCccccccCCchHHHHHHHHhcccccccEEEEec-CCCCCC----------hhHHHHHHHHHHHcCCcEEEEecccccCc
Q 009196 286 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR-TGYFEG----------KNRIDSLIADIGTWGASAVTVHGRTRQQR 354 (540)
Q Consensus 286 ~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G~~e~----------~~~~~~la~~leeaGvdaItVHgRtr~q~ 354 (540)
||.--.+..|-+...++++..+.. +++|-.-+- +|-.++ -.+..+..+.+++.|+|++.|.-.|..+.
T Consensus 107 DgS~lp~eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 185 (288)
T TIGR00167 107 DGSHEPFEENIELTKKVVERAHKM-GVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGV 185 (288)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccc
Confidence 333334555666777777665432 444444332 111111 01234444556779999998877777777
Q ss_pred cCC-C--cCHHHHHHHHHHcCCCceEEEeCCCCCH-HHHHHHHhcCCCcCeeeecHHHH
Q 009196 355 YSK-L--ADWDYIYQCARKASDDLQVLGNGDIYSY-LDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 355 y~g-~--adw~~I~~i~~~~~~~IPVIgNGdI~s~-eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
|.+ | .||+.+++|++.+ ++|++.-|+=-.+ +++.+++. .|+.=|=|++.+.
T Consensus 186 y~~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~--~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 186 YKGEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAIS--LGVVKVNIDTELQ 240 (288)
T ss_pred cCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHH--cCCeEEEcChHHH
Confidence 753 2 5899999999999 7999999987777 46666665 6777777776654
No 370
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.69 E-value=0.98 Score=47.98 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=61.8
Q ss_pred chHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHH--cCCcEEEEecccccCccCCCcCHHHHHHHHHHcCC
Q 009196 296 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT--WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD 373 (540)
Q Consensus 296 p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~lee--aGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~ 373 (540)
++.-.+.++.++.....-+.| ..|..+ +-.+.+..|.+ +|+|.|+|.- .++++. .-.+.|+.|++.+|
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~---~d~er~~~L~~~~~g~D~iviD~---AhGhs~-~~i~~ik~ik~~~P- 150 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSD---ADFEKTKQILALSPALNFICIDV---ANGYSE-HFVQFVAKAREAWP- 150 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCH---HHHHHHHHHHhcCCCCCEEEEEC---CCCcHH-HHHHHHHHHHHhCC-
Confidence 444455566666443222333 444432 23455556665 6999999842 122221 23578999999997
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 374 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 374 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+++|| .|.|-|++-+..++. .|||+|=||
T Consensus 151 ~~~vI-aGNV~T~e~a~~Li~--aGAD~vKVG 179 (346)
T PRK05096 151 DKTIC-AGNVVTGEMVEELIL--SGADIVKVG 179 (346)
T ss_pred CCcEE-EecccCHHHHHHHHH--cCCCEEEEc
Confidence 67755 699999999988665 899998655
No 371
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.68 E-value=13 Score=37.85 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=95.2
Q ss_pred cCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 239 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 239 ~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
....|+++++.+.+..+..+.|+.++ ++|+|+|=+- -|.-.. -..+-+.+-.+++.+++++||.+--
T Consensus 64 ~~~~~vi~gv~~~~~~~~i~~a~~a~-~~Gad~v~v~--pP~y~~----------~~~~~~~~~~~~ia~~~~~pi~iYn 130 (281)
T cd00408 64 AGRVPVIAGVGANSTREAIELARHAE-EAGADGVLVV--PPYYNK----------PSQEGIVAHFKAVADASDLPVILYN 130 (281)
T ss_pred CCCCeEEEecCCccHHHHHHHHHHHH-HcCCCEEEEC--CCcCCC----------CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34578999999999998999998887 7899999993 343211 2356677788888888899998864
Q ss_pred cCCCCCChhHHHHHHHHHHHc-CCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCC
Q 009196 319 RTGYFEGKNRIDSLIADIGTW-GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCP 397 (540)
Q Consensus 319 R~G~~e~~~~~~~la~~leea-GvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ 397 (540)
-.+.... .-..+++.+|.+. .+.+|- ++. .++..+.++.+..+.++.|+ +|. + ..+...+. .
T Consensus 131 ~P~~tg~-~l~~~~~~~L~~~~~v~giK---------~s~-~d~~~~~~~~~~~~~~~~v~-~G~--d-~~~~~~l~--~ 193 (281)
T cd00408 131 IPGRTGV-DLSPETIARLAEHPNIVGIK---------DSS-GDLDRLTRLIALLGPDFAVL-SGD--D-DLLLPALA--L 193 (281)
T ss_pred CccccCC-CCCHHHHHHHhcCCCEEEEE---------eCC-CCHHHHHHHHHhcCCCeEEE-Ecc--h-HHHHHHHH--c
Confidence 4322111 1123445555442 122221 122 57777888877764344444 555 2 33344454 6
Q ss_pred CcCeeeecHHHHhCCCchHHHHh
Q 009196 398 ELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 398 gaDgVMIGRgaL~nPwif~eik~ 420 (540)
|++|++.|-+. .-|+++.++-+
T Consensus 194 G~~G~i~~~~n-~~p~~~~~~~~ 215 (281)
T cd00408 194 GADGAISGAAN-VAPKLAVALYE 215 (281)
T ss_pred CCCEEEehHHh-hCHHHHHHHHH
Confidence 89999988654 45777777654
No 372
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.54 E-value=1.5 Score=46.98 Aligned_cols=50 Identities=20% Similarity=0.027 Sum_probs=40.5
Q ss_pred CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeee----cHHHHhCC
Q 009196 358 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI----ARGALIKP 412 (540)
Q Consensus 358 ~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI----GRgaL~nP 412 (540)
...|+.+..+++.. ++||+.-| |.+++|+..+.+ .|||+|.| ||-+..-|
T Consensus 207 ~~~~~~l~~lr~~~--~~PvivKg-v~~~~dA~~a~~--~G~d~I~vsnhGGr~ld~~~ 260 (351)
T cd04737 207 KLSPADIEFIAKIS--GLPVIVKG-IQSPEDADVAIN--AGADGIWVSNHGGRQLDGGP 260 (351)
T ss_pred CCCHHHHHHHHHHh--CCcEEEec-CCCHHHHHHHHH--cCCCEEEEeCCCCccCCCCc
Confidence 45799999999988 69999886 889999988776 79999988 55544444
No 373
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=92.52 E-value=0.78 Score=48.89 Aligned_cols=87 Identities=11% Similarity=0.189 Sum_probs=62.3
Q ss_pred ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccc-------c-----C-------------------------c
Q 009196 312 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-------Q-----Q-------------------------R 354 (540)
Q Consensus 312 iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr-------~-----q-------------------------~ 354 (540)
.|+.+=+-... +...+.+++++++.+|+++|.||--+. . + .
T Consensus 118 ~~~w~Qly~~~--d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 195 (344)
T cd02922 118 QPLFFQLYVNK--DRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGF 195 (344)
T ss_pred CcEEEEEeecC--CHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhc
Confidence 46655443322 446678899999999999999873211 0 0 0
Q ss_pred cCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 355 YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 355 y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+.+...|+.++.+++.. ++|||.- +|.+.+|+..+.. .|||+|.|.
T Consensus 196 ~~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~--~G~d~I~vs 241 (344)
T cd02922 196 IDPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAE--YGVDGIVLS 241 (344)
T ss_pred cCCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHH--cCCCEEEEE
Confidence 11235799999999988 6999987 6789999988765 799998764
No 374
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=92.52 E-value=0.67 Score=47.60 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=72.3
Q ss_pred CCCeEEEEecCCcH-HHHHHHHHHHHHhCCCCEEEecCCCCCccc---------ccCCccccccCCchHHHHHHHHhccc
Q 009196 240 SEDLFGVQICGAYP-DTLARTVELIDQQCTVDFIDINMGCPIDIV---------VNKGAGSCLLTKPMRMKGIIEATSGT 309 (540)
Q Consensus 240 ~e~p~~vQL~G~~p-~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v---------~~~G~GsaLl~~p~~l~eIv~av~~~ 309 (540)
.+.|+..=+++.|| -.+..-.+.+. +.||.+|. |+ |.--. ...|+| .++=.++++..++.
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk-~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmg------y~~EVemi~~A~~~ 149 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELK-ELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMG------YDREVEMIRKAHEK 149 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHH-HHT-SEEE-E---S-GGG--HHHHHHHHHTT--------HHHHHHHHHHHHHT
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHH-HhCCceEE-EC--CcceeeccHHHHHHHhcCCC------HHHHHHHHHHHHHC
Confidence 35799999999998 34555555665 57999984 54 53211 122333 23333455544432
Q ss_pred --ccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCC---cCH----HHHHHHHHH---c-CCCce
Q 009196 310 --VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL---ADW----DYIYQCARK---A-SDDLQ 376 (540)
Q Consensus 310 --v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~---adw----~~I~~i~~~---~-~~~IP 376 (540)
..+|+.. +. +=|+++.++|+|.|.+|-.....+..|. ..+ +.+.++.++ + |+-|-
T Consensus 150 gl~T~~yvf--------~~----e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~ 217 (268)
T PF09370_consen 150 GLFTTAYVF--------NE----EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIV 217 (268)
T ss_dssp T-EE--EE---------SH----HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EE
T ss_pred CCeeeeeec--------CH----HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 1334433 22 3356667899999999965433332221 112 233333332 2 33366
Q ss_pred EEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 377 VLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 377 VIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
++--|-|.+++|+..++....+|+|..-|.
T Consensus 218 l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~S 247 (268)
T PF09370_consen 218 LCHGGPIATPEDAQYVLRNTKGIHGFIGAS 247 (268)
T ss_dssp EEECTTB-SHHHHHHHHHH-TTEEEEEEST
T ss_pred EEeCCCCCCHHHHHHHHhcCCCCCEEeccc
Confidence 777788999999999999855599987764
No 375
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=92.50 E-value=0.34 Score=53.84 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+..+.++.|.++|++.|++-.-. +.. ..-++.++.+++..+ ++|||+ |+|.|++++..+.. .|||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~---g~~-~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~~l~~--aGad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAH---GHS-EGVLDRVREIKAKYP-DVQIIA-GNVATAEAARALIE--AGADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCC---Ccc-hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHHHHHH--cCCCEEEEC
Confidence 34788999999999999873211 111 124577899998876 689888 99999999999776 799999775
No 376
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=92.39 E-value=1.2 Score=47.38 Aligned_cols=69 Identities=6% Similarity=-0.064 Sum_probs=50.9
Q ss_pred HHHHHHHHHHc--CCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 329 IDSLIADIGTW--GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 329 ~~~la~~leea--GvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
..+.++.|.++ |+|.|+|.- .++++. .-.+.|+.+++..| -+.|..|.|.+++++..++. .|||+|-||
T Consensus 108 d~er~~~L~~a~~~~d~iviD~---AhGhs~-~~i~~ik~ir~~~p--~~~viaGNV~T~e~a~~Li~--aGAD~ikVg 178 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICLDV---ANGYSE-HFVEFVKLVREAFP--EHTIMAGNVVTGEMVEELIL--SGADIVKVG 178 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEEEC---CCCcHH-HHHHHHHHHHhhCC--CCeEEEecccCHHHHHHHHH--cCCCEEEEc
Confidence 35667777777 599999842 122221 23578999999885 35666799999999999776 799999877
No 377
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.36 E-value=3.9 Score=43.44 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=60.2
Q ss_pred cccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCc---EEEEecccccCccCCCcCHHHHH
Q 009196 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGAS---AVTVHGRTRQQRYSKLADWDYIY 365 (540)
Q Consensus 289 GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvd---aItVHgRtr~q~y~g~adw~~I~ 365 (540)
||.-+.+..++..+-+ .++||.++.-++ +..++...+..+.+.|.. .+.+|.-+.........|+..|.
T Consensus 116 aS~~~~n~pLL~~~A~-----~gkPvilStGma---tl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~ 187 (329)
T TIGR03569 116 PSGEITNAPLLKKIAR-----FGKPVILSTGMA---TLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMD 187 (329)
T ss_pred CcccccCHHHHHHHHh-----cCCcEEEECCCC---CHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHH
Confidence 6666788777766543 489999976653 567788888888899985 67778654322222346899999
Q ss_pred HHHHHcCCCceEEEeC
Q 009196 366 QCARKASDDLQVLGNG 381 (540)
Q Consensus 366 ~i~~~~~~~IPVIgNG 381 (540)
.+++.+ ++||..++
T Consensus 188 ~Lk~~f--~~pVG~Sd 201 (329)
T TIGR03569 188 TLKEAF--DLPVGYSD 201 (329)
T ss_pred HHHHHh--CCCEEECC
Confidence 999998 69998764
No 378
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.36 E-value=3.1 Score=43.25 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=75.6
Q ss_pred CCccccccCCchHHHHHHHHhcccccccEEEEec-CCCCCC----------hhHHHHHHHHHHHcCCcEEEEecccccCc
Q 009196 286 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR-TGYFEG----------KNRIDSLIADIGTWGASAVTVHGRTRQQR 354 (540)
Q Consensus 286 ~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G~~e~----------~~~~~~la~~leeaGvdaItVHgRtr~q~ 354 (540)
||.--.+..|-++..++++..+. .++.|-.-+- +|-.++ -.+..+..+.+++.|+|++.|.-.|..+.
T Consensus 104 DgS~lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK12857 104 DGSKLPLEENIALTKKVVEIAHA-VGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGP 182 (284)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccc
Confidence 34333455667777777777653 2444433321 111111 11334445555788999998877777777
Q ss_pred cCCC--cCHHHHHHHHHHcCCCceEEEeCCCCCHH-HHHHHHhcCCCcCeeeecHHHH
Q 009196 355 YSKL--ADWDYIYQCARKASDDLQVLGNGDIYSYL-DWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 355 y~g~--adw~~I~~i~~~~~~~IPVIgNGdI~s~e-Da~~~l~~~~gaDgVMIGRgaL 409 (540)
|.+. .||+.+++|++.+ ++|++.-|+=-.++ ++.+++. .|+.=|=|++.+.
T Consensus 183 y~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~--~Gi~KiNi~T~~~ 236 (284)
T PRK12857 183 YKGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAIS--LGVRKVNIDTNIR 236 (284)
T ss_pred cCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHH--cCCeEEEeCcHHH
Confidence 7653 5799999999998 79999888766554 4555554 6777777776654
No 379
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=92.33 E-value=0.28 Score=51.69 Aligned_cols=74 Identities=7% Similarity=0.037 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
..+.++.+++++.|+.-|.+..-...+.-.| .|.+.++-++..+ .||||++.|--+++...+.+++ +.||+..-
T Consensus 441 igv~ELtrAcEalGAGEiLLNCiD~DGsn~G-yDieLv~lvkdsV--~IPVIASSGAG~P~HFeEvF~k-T~adAaLa 514 (541)
T KOG0623|consen 441 IGVFELTRACEALGAGEILLNCIDCDGSNKG-YDIELVKLVKDSV--GIPVIASSGAGTPDHFEEVFEK-TNADAALA 514 (541)
T ss_pred cchhhHHHHHHHhCcchheeeeeccCCCCCC-cchhHHHHhhccc--CCceEecCCCCCcHHHHHHHHh-cCchhhhh
Confidence 3688999999999999998876655444333 7899999999999 7999999999999999999987 99997643
No 380
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=92.26 E-value=0.8 Score=49.58 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=65.4
Q ss_pred HHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEE-----eccc-ccCccCCCcCHHHH----HHHH
Q 009196 300 KGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-----HGRT-RQQRYSKLADWDYI----YQCA 368 (540)
Q Consensus 300 ~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItV-----HgRt-r~q~y~g~adw~~I----~~i~ 368 (540)
.+-+..+++.. ++||.+-+--+. +.++..+++++++++|+|+|.+ |+.. +..+..-..+.+.+ ..++
T Consensus 101 l~~i~~~k~~~~~~pvIaSi~~~~--s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk 178 (385)
T PLN02495 101 LAEFKQLKEEYPDRILIASIMEEY--NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWIN 178 (385)
T ss_pred HHHHHHHHhhCCCCcEEEEccCCC--CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHH
Confidence 33345566555 679999553222 4578899999999999999998 3211 11100001234555 4446
Q ss_pred HHcCCCceEE--EeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 369 RKASDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 369 ~~~~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+.+ ++||+ ..-++.+..+..+.+.+ .|||||.+-
T Consensus 179 ~~~--~iPv~vKLsPn~t~i~~ia~aa~~-~Gadgi~li 214 (385)
T PLN02495 179 AKA--TVPVWAKMTPNITDITQPARVALK-SGCEGVAAI 214 (385)
T ss_pred Hhh--cCceEEEeCCChhhHHHHHHHHHH-hCCCEEEEe
Confidence 655 68887 56788888888887776 899999654
No 381
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=92.18 E-value=3.7 Score=43.42 Aligned_cols=103 Identities=9% Similarity=0.086 Sum_probs=64.9
Q ss_pred cccCCchHHHHHHHHhcccccccEEEEec-CC-CCCC-------hhHHHHHHHHHHHcCCcEEEEecccccCccCC----
Q 009196 291 CLLTKPMRMKGIIEATSGTVDKPITIKVR-TG-YFEG-------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK---- 357 (540)
Q Consensus 291 aLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G-~~e~-------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g---- 357 (540)
.+..|-+...++++.++. .++.|-.-+- +| ..+. -.+..+..+.+++.|+|++.+.-.|..+.|.+
T Consensus 120 p~eeNI~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~ 198 (321)
T PRK07084 120 PYEENVALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQ 198 (321)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCC
Confidence 344556666777766653 3444443332 11 1111 11344445556678999998877777777753
Q ss_pred ---CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 009196 358 ---LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 395 (540)
Q Consensus 358 ---~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 395 (540)
..+|+.+++|++.++ ++|++.-|+=..++++.+.+..
T Consensus 199 ~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~ 238 (321)
T PRK07084 199 CPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINE 238 (321)
T ss_pred CCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHH
Confidence 358999999999985 5999999988666555554444
No 382
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=92.18 E-value=2.8 Score=42.61 Aligned_cols=136 Identities=14% Similarity=0.089 Sum_probs=76.4
Q ss_pred eEEEEecCCc-HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccc--cEEEEec
Q 009196 243 LFGVQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK--PITIKVR 319 (540)
Q Consensus 243 p~~vQL~G~~-p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~i--PVtVKiR 319 (540)
++++=+=-.| |..+..+++.+. +.|+|.|.+| ++|+ .+-+...+++....... -||+=..
T Consensus 64 ~VflDlK~~DIpnT~~~~~~~~~-~~g~d~vtvH-----------~~~G-----~~~~~~~~e~~~~~~~~vl~vT~lts 126 (240)
T COG0284 64 KVFLDLKLADIPNTVALAAKAAA-DLGADAVTVH-----------AFGG-----FDMLRAAKEALEAGGPFVLAVTSLTS 126 (240)
T ss_pred ceEEeeecccchHHHHHHHHHhh-hcCCcEEEEe-----------CcCC-----HHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 5555554343 677888888776 7899999998 3333 12233333333222111 1222112
Q ss_pred CCCC--------C-ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEE----Ee------
Q 009196 320 TGYF--------E-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL----GN------ 380 (540)
Q Consensus 320 ~G~~--------e-~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVI----gN------ 380 (540)
++.. . ..+.+.++++....+|.+++...+ ..+..+++.++.+.+++ +-
T Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~-------------~e~~~ir~~~g~~~~iltPGIg~~~~~gd 193 (240)
T COG0284 127 MGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSA-------------EEVAAIREILGPDFLILTPGIGAGSQGGD 193 (240)
T ss_pred chhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCH-------------HHHHHHHHhcCCCcEEECCCcCcCcCCCC
Confidence 2211 0 124566677777778888887632 23455555542123332 22
Q ss_pred -CCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 381 -GDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 381 -GdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
+++.++.++.. .|+|.+.|||+.+..+.
T Consensus 194 Q~~~~t~~~A~~-----~Gad~ivVGR~I~~a~~ 222 (240)
T COG0284 194 QGRVMTPGEAVR-----AGADYIVVGRPITQAGD 222 (240)
T ss_pred cccccCHHHHHh-----cCCCEEEEChhhhcCCC
Confidence 45556777644 79999999999998754
No 383
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=92.15 E-value=2.2 Score=43.90 Aligned_cols=137 Identities=19% Similarity=0.132 Sum_probs=79.4
Q ss_pred HHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-------cccEEEEecCCCCCChhHHHH
Q 009196 259 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-------DKPITIKVRTGYFEGKNRIDS 331 (540)
Q Consensus 259 AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-------~iPVtVKiR~G~~e~~~~~~~ 331 (540)
.|+++. ++|+|.|=+ |-....+ .-|+-+.+--..+.+...+++|++.. +.|++ ++. +.+++..
T Consensus 27 sA~i~~-~aG~d~ilv--GdSlgm~-~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~-----sy~-~~e~a~~ 96 (263)
T TIGR00222 27 FAKLFA-DAGVDVILV--GDSLGMV-VLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFM-----SYA-TPEQALK 96 (263)
T ss_pred HHHHHH-HcCCCEEEE--CccHhHH-hcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcC-----CCC-CHHHHHH
Confidence 344554 789999875 4332222 24555555556778888888888874 55555 443 3566666
Q ss_pred HHHHH-HHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEE---------Ee--CCCC----CHHHHHHH---
Q 009196 332 LIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL---------GN--GDIY----SYLDWNKH--- 392 (540)
Q Consensus 332 la~~l-eeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVI---------gN--GdI~----s~eDa~~~--- 392 (540)
-+.++ +++|+++|.|-|. ....+.|+.+.+. .|||+ ++ ||.. +.+.+.++
T Consensus 97 na~rl~~eaGa~aVkiEgg--------~~~~~~i~~l~~~---gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~ 165 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG--------EWLVETVQMLTER---GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLED 165 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc--------HhHHHHHHHHHHC---CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHH
Confidence 66665 5599999999763 1122444444442 69998 33 5442 44443333
Q ss_pred ---HhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 393 ---KSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 393 ---l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
+++ .||+++.+= +.- +.+.++|-+
T Consensus 166 A~a~e~-AGA~~ivlE-~vp--~~~a~~It~ 192 (263)
T TIGR00222 166 ALALEE-AGAQLLVLE-CVP--VELAAKITE 192 (263)
T ss_pred HHHHHH-cCCCEEEEc-CCc--HHHHHHHHH
Confidence 334 799988663 111 245555544
No 384
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.07 E-value=0.46 Score=53.09 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 328 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 328 ~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
++.+.++.|.++|+|.|.|. + .+.++. .-.+.|+.+++..+.+ -.|+.|.|.+++++..++. .|||+|.||.
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd--~-a~g~~~-~~~~~i~~ir~~~~~~-~~V~aGnV~t~e~a~~li~--aGAd~I~vg~ 313 (502)
T PRK07107 242 DYAERVPALVEAGADVLCID--S-SEGYSE-WQKRTLDWIREKYGDS-VKVGAGNVVDREGFRYLAE--AGADFVKVGI 313 (502)
T ss_pred hHHHHHHHHHHhCCCeEeec--C-cccccH-HHHHHHHHHHHhCCCC-ceEEeccccCHHHHHHHHH--cCCCEEEECC
Confidence 56788999999999999885 1 112211 1257889999988522 3467799999999999886 7999998853
No 385
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.03 E-value=1.5 Score=44.91 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=58.2
Q ss_pred ccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccC-----CC-cCHHHHHHHHHHcCCCceEEE--eC
Q 009196 310 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYS-----KL-ADWDYIYQCARKASDDLQVLG--NG 381 (540)
Q Consensus 310 v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~-----g~-adw~~I~~i~~~~~~~IPVIg--NG 381 (540)
.+.||.+=++.. +.++..+.++.++++|+++|.|+......... .+ .-.+.+..+++.+ ++||+. ++
T Consensus 97 ~~~pvi~si~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~ 171 (289)
T cd02810 97 PGQPLIASVGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSP 171 (289)
T ss_pred CCCeEEEEeccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCC
Confidence 478998877642 45678899999999999999998654321111 11 1135567777776 688774 34
Q ss_pred CCC--CHHHHHHHHhcCCCcCeeeec
Q 009196 382 DIY--SYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 382 dI~--s~eDa~~~l~~~~gaDgVMIG 405 (540)
++. +..++.+.+.+ .|||+|.+.
T Consensus 172 ~~~~~~~~~~a~~l~~-~Gad~i~~~ 196 (289)
T cd02810 172 YFDLEDIVELAKAAER-AGADGLTAI 196 (289)
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 443 23334444555 799999875
No 386
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=91.82 E-value=4.8 Score=39.88 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=76.9
Q ss_pred EEEecCCc-HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCC
Q 009196 245 GVQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF 323 (540)
Q Consensus 245 ~vQL~G~~-p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~ 323 (540)
.++|||-. +++...| . ++|+|+|=+.+..+.+.. =.++.+.+|.+.+...+ .+|.|-..
T Consensus 4 ~vKICGi~~~eda~~~----~-~~Gad~iGfI~~~~S~R~----------V~~~~a~~i~~~~~~~i-~~VgVf~~---- 63 (210)
T PRK01222 4 RVKICGITTPEDAEAA----A-ELGADAIGFVFYPKSPRY----------VSPEQAAELAAALPPFV-KVVGVFVN---- 63 (210)
T ss_pred eEEECCCCcHHHHHHH----H-HcCCCEEEEccCCCCCCc----------CCHHHHHHHHHhCCCCC-CEEEEEeC----
Confidence 48999954 4443333 3 468998888643332211 24677778877765322 24444222
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 324 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 324 e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
....++.+.+++++.+.|.+||- .+.+++..+++.. +++||-.=.|.+..+...+......||.++
T Consensus 64 ---~~~~~i~~~~~~~~~d~vQLHg~---------e~~~~~~~l~~~~--~~~iik~i~v~~~~~l~~~~~~~~~~d~~L 129 (210)
T PRK01222 64 ---ASDEEIDEIVETVPLDLLQLHGD---------ETPEFCRQLKRRY--GLPVIKALRVRSAGDLEAAAAYYGDADGLL 129 (210)
T ss_pred ---CCHHHHHHHHHhcCCCEEEECCC---------CCHHHHHHHHhhc--CCcEEEEEecCCHHHHHHHHhhhccCCEEE
Confidence 23446677788999999999972 3356788888766 467765555555555444333224678877
Q ss_pred ec
Q 009196 404 IA 405 (540)
Q Consensus 404 IG 405 (540)
+=
T Consensus 130 ~D 131 (210)
T PRK01222 130 LD 131 (210)
T ss_pred Ec
Confidence 64
No 387
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=91.78 E-value=1 Score=48.43 Aligned_cols=52 Identities=15% Similarity=-0.025 Sum_probs=40.5
Q ss_pred CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec----HHHHhCCC
Q 009196 357 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA----RGALIKPW 413 (540)
Q Consensus 357 g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG----RgaL~nPw 413 (540)
+..+|+.|+.+++.. ++||+.=| |.+.+|+..+.+ .|||+|.|+ |.+...|.
T Consensus 213 ~~~~w~~i~~l~~~~--~~PvivKG-v~~~eda~~a~~--~Gvd~I~VS~HGGrq~~~~~a 268 (367)
T TIGR02708 213 QKLSPRDIEEIAGYS--GLPVYVKG-PQCPEDADRALK--AGASGIWVTNHGGRQLDGGPA 268 (367)
T ss_pred CCCCHHHHHHHHHhc--CCCEEEeC-CCCHHHHHHHHH--cCcCEEEECCcCccCCCCCCc
Confidence 346799999999988 69999775 889999999776 799998663 44444454
No 388
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.75 E-value=1.5 Score=43.94 Aligned_cols=107 Identities=13% Similarity=-0.002 Sum_probs=74.9
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCc--eEEEeCCCCCHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL--QVLGNGDIYSYLDWN 390 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~I--PVIgNGdI~s~eDa~ 390 (540)
+|..=+|. ++.+++..+++.|.+.|+..|-|.-|| +...+.|+++++...... -+||.|-|.|.+++.
T Consensus 16 ~vi~Vvr~---~~~~~a~~~~~al~~gGi~~iEiT~~t-------p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 16 GMVPVFYH---ADVEVAKKVIKACYDGGARVFEFTNRG-------DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred CEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 44444675 356889999999999999999997665 334566777654321112 389999999999999
Q ss_pred HHHhcCCCcCeeeecHHHHhCCCchHHHHhcCC----CCCCHHHHHHH
Q 009196 391 KHKSDCPELASCMIARGALIKPWIFTEIKEQRH----WDITSGERLNI 434 (540)
Q Consensus 391 ~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~~----~~~s~~erl~i 434 (540)
.+++ .||+.+|-= -.+|.+.+..++... .-.|++|-..-
T Consensus 86 ~a~~--aGA~FiVsP---~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A 128 (222)
T PRK07114 86 LYIQ--LGANFIVTP---LFNPDIAKVCNRRKVPYSPGCGSLSEIGYA 128 (222)
T ss_pred HHHH--cCCCEEECC---CCCHHHHHHHHHcCCCEeCCCCCHHHHHHH
Confidence 9887 799987642 267777777665432 13477775544
No 389
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.72 E-value=2.7 Score=41.61 Aligned_cols=126 Identities=13% Similarity=0.232 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHH
Q 009196 253 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 332 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~l 332 (540)
.+.|.+-++.+. ++|+|+|=+ ||= ..+|. =|.+.+.+++++.. +.|+|+ -| .++. ..+..+-
T Consensus 71 ~~~M~~dI~~~~-~~GadG~Vf--G~L----~~dg~-----iD~~~~~~Li~~a~---~~~~tF-HR-AfD~-~~d~~~a 132 (201)
T PF03932_consen 71 IEIMKEDIRMLR-ELGADGFVF--GAL----TEDGE-----IDEEALEELIEAAG---GMPVTF-HR-AFDE-VPDPEEA 132 (201)
T ss_dssp HHHHHHHHHHHH-HTT-SEEEE----B----ETTSS-----B-HHHHHHHHHHHT---TSEEEE--G-GGGG-SSTHHHH
T ss_pred HHHHHHHHHHHH-HcCCCeeEE--EeE----CCCCC-----cCHHHHHHHHHhcC---CCeEEE-eC-cHHH-hCCHHHH
Confidence 456777777776 789999987 441 11221 36677888887765 678888 44 3433 2345566
Q ss_pred HHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCee
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC 402 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgV 402 (540)
...|.+.|++.|--||... +-....+.++++.+....+|-|+..||| +++.+..+++. +|+..+
T Consensus 133 l~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~Im~GgGv-~~~nv~~l~~~-tg~~~~ 196 (201)
T PF03932_consen 133 LEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEIMPGGGV-RAENVPELVEE-TGVREI 196 (201)
T ss_dssp HHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHH-HT-SEE
T ss_pred HHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEEEecCCC-CHHHHHHHHHh-hCCeEE
Confidence 7778888999998777542 1223467777777766557999999999 56777777775 777655
No 390
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=91.63 E-value=3.4 Score=41.73 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=79.0
Q ss_pred cCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHH
Q 009196 285 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 364 (540)
Q Consensus 285 ~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I 364 (540)
+...|=.+..+.+.+..+++.++++ ++.||+-|-.. .+-++...+.|++.|-+|...-...+........+
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~-gI~VSLFiDPd--------~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el 168 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDA-GIRVSLFIDPD--------PEQIEAAKEVGADRVELHTGPYANAYDKAEREAEL 168 (234)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHC-CCEEEEEeCCC--------HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHH
Confidence 4456777888999999999999875 88888866541 23456677889999999965433333222212223
Q ss_pred HHH------HHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 365 YQC------ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 365 ~~i------~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
.++ +... .+-|=+..|+ +++.+..+.. .++..-|-||.+++.+-
T Consensus 169 ~~i~~aa~~a~~~--GL~VnAGHgL-ny~Nv~~i~~-ip~i~ElnIGHsiia~A 218 (234)
T cd00003 169 ERIAKAAKLAREL--GLGVNAGHGL-NYENVKPIAK-IPGIAELNIGHAIISRA 218 (234)
T ss_pred HHHHHHHHHHHHc--CCEEecCCCC-CHHHHHHHHh-CCCCeEEccCHHHHHHH
Confidence 322 2334 5777777787 8888877665 58999999999887653
No 391
>PLN02363 phosphoribosylanthranilate isomerase
Probab=91.60 E-value=6.1 Score=40.51 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=48.0
Q ss_pred EEEEecCCc-HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCC
Q 009196 244 FGVQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY 322 (540)
Q Consensus 244 ~~vQL~G~~-p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~ 322 (540)
..|+|||-. +++...|+ ++|+|.|=+.+-.+.+.- =.++.+.+|++.+....-.+|.|-..
T Consensus 47 ~~VKICGit~~eda~~a~-----~~GaD~iGfIf~~~SpR~----------Vs~e~a~~I~~~l~~~~~~~VgVfv~--- 108 (256)
T PLN02363 47 PLVKMCGITSARDAAMAV-----EAGADFIGMILWPKSKRS----------ISLSVAKEISQVAREGGAKPVGVFVD--- 108 (256)
T ss_pred ceEEECCCCcHHHHHHHH-----HcCCCEEEEecCCCCCCc----------CCHHHHHHHHHhccccCccEEEEEeC---
Confidence 358999964 44443333 469999988753333221 14677777777664321112333222
Q ss_pred CCChhHHHHHHHHHHHcCCcEEEEec
Q 009196 323 FEGKNRIDSLIADIGTWGASAVTVHG 348 (540)
Q Consensus 323 ~e~~~~~~~la~~leeaGvdaItVHg 348 (540)
....+++..+++.|.+.|.+||
T Consensus 109 ----~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 109 ----DDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred ----CCHHHHHHHHHhcCCCEEEECC
Confidence 1234566667778888888887
No 392
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=91.58 E-value=3.9 Score=42.68 Aligned_cols=127 Identities=6% Similarity=0.050 Sum_probs=86.5
Q ss_pred EEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecCCC
Q 009196 245 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGY 322 (540)
Q Consensus 245 ~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~G~ 322 (540)
...|...+++.+.+.+.. ..||..|-|..| . .+++.-.+.|++++++++ ..+.|-.--+|
T Consensus 104 ~~~l~~~~~~~~~~~~~~---~~Gf~~~KiKvG----------~-----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w 165 (307)
T TIGR01927 104 VALLPAGDPALLLLRSAK---AEGFRTFKWKVG----------V-----GELAREGMLVNLLLEALPDKAELRLDANGGL 165 (307)
T ss_pred eeeccCCCHHHHHHHHHH---hCCCCEEEEEeC----------C-----CChHHHHHHHHHHHHHcCCCCeEEEeCCCCC
Confidence 344555677777655543 459998888532 1 145556677888888763 33444444456
Q ss_pred CCChhHHHHHHHHHHH---cCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 009196 323 FEGKNRIDSLIADIGT---WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 323 ~e~~~~~~~la~~lee---aGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 399 (540)
+..++.++++.|++ .++.+| +|.. ..++....+++.+ ++||.+.=.+.++.|+..++.. ..+
T Consensus 166 --~~~~A~~~~~~l~~~~~~~i~~i-------EqP~---~~~~~~~~l~~~~--~~Pia~dEs~~~~~d~~~~~~~-~~~ 230 (307)
T TIGR01927 166 --SPDEAQQFLKALDPNLRGRIAFL-------EEPL---PDADEMSAFSEAT--GTAIALDESLWELPQLADEYGP-GWR 230 (307)
T ss_pred --CHHHHHHHHHhcccccCCCceEE-------eCCC---CCHHHHHHHHHhC--CCCEEeCCCcCChHHHHHHHhc-CCC
Confidence 34678999999987 667666 3433 2236778888888 7999999999999999998875 556
Q ss_pred Ceeee
Q 009196 400 ASCMI 404 (540)
Q Consensus 400 DgVMI 404 (540)
|.|.+
T Consensus 231 d~i~i 235 (307)
T TIGR01927 231 GALVI 235 (307)
T ss_pred ceEEE
Confidence 77654
No 393
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.58 E-value=0.59 Score=48.49 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCC-cCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH---hcCCCcCe
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL-ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK---SDCPELAS 401 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~-adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l---~~~~gaDg 401 (540)
.....++++.+.+.|++.|.+.|-|.+..+-.. -..+.++.+.+.+.+++|||+.=+-.+.+++.++. ++ .|||+
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~-~Gad~ 98 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEE-AGADA 98 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHH-cCCCE
Confidence 456788899999999999999998876544222 23455666677666679998555556666665432 33 79999
Q ss_pred eeecHHHHhCC
Q 009196 402 CMIARGALIKP 412 (540)
Q Consensus 402 VMIGRgaL~nP 412 (540)
||+.-..+..|
T Consensus 99 v~v~pP~y~~~ 109 (294)
T TIGR02313 99 AMVIVPYYNKP 109 (294)
T ss_pred EEEcCccCCCC
Confidence 99999988887
No 394
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=91.55 E-value=2.6 Score=47.21 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 319 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR 319 (540)
+.+.+-|+... +.|+|.||||++...+ .++.+..+|+++++.+++||+|-..
T Consensus 165 ~~i~~~A~~~~-~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT~ 216 (499)
T TIGR00284 165 DGIEGLAARME-RDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADTP 216 (499)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeCC
Confidence 44555555544 5699999998766432 2446889999998888899999653
No 395
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=91.52 E-value=7.9 Score=37.15 Aligned_cols=121 Identities=15% Similarity=0.049 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccc-ccccEEE--EecCCCCCCh
Q 009196 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT-VDKPITI--KVRTGYFEGK 326 (540)
Q Consensus 250 G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~-v~iPVtV--KiR~G~~e~~ 326 (540)
-.++++..+.++.+. +. ++.|+++ -|. .. ..| .+.++.+++. .++|+.+ |+...
T Consensus 9 ~~~~~~~~~~~~~l~-~~-i~~ieig--~~~--~~--~~g----------~~~i~~i~~~~~~~~i~~~~~v~~~----- 65 (202)
T cd04726 9 LLDLEEALELAKKVP-DG-VDIIEAG--TPL--IK--SEG----------MEAVRALREAFPDKIIVADLKTADA----- 65 (202)
T ss_pred CCCHHHHHHHHHHhh-hc-CCEEEcC--CHH--HH--HhC----------HHHHHHHHHHCCCCEEEEEEEeccc-----
Confidence 446788888888887 44 9999994 222 11 112 3566666664 3677776 43321
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEe-CCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN-GDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgN-GdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
. ..+++.+.++|++.|++|+.+.. ...-+.+..+++ . +++++.. =...|++++.+++. .++|.|.++
T Consensus 66 ~--~~~~~~~~~aGad~i~~h~~~~~-----~~~~~~i~~~~~-~--g~~~~v~~~~~~t~~e~~~~~~--~~~d~v~~~ 133 (202)
T cd04726 66 G--ALEAEMAFKAGADIVTVLGAAPL-----STIKKAVKAAKK-Y--GKEVQVDLIGVEDPEKRAKLLK--LGVDIVILH 133 (202)
T ss_pred c--HHHHHHHHhcCCCEEEEEeeCCH-----HHHHHHHHHHHH-c--CCeEEEEEeCCCCHHHHHHHHH--CCCCEEEEc
Confidence 1 24568889999999999986421 011234555554 3 4677653 67778999888554 689999885
No 396
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=91.48 E-value=2.1 Score=46.40 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=37.8
Q ss_pred CCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 357 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 357 g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+..+|+.|+.+++.. ++|||.- +|.+.+|+..+++ .|||+|.|.
T Consensus 238 ~~~tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~--~G~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREWT--DLPIVLK-GILHPDDARRAVE--AGVDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHH--CCCCEEEEc
Confidence 456899999999998 6898876 6789999999886 799999874
No 397
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=91.43 E-value=1 Score=46.47 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHHcCCcEEEEecccccCccCCCcCH-HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 335 DIGTWGASAVTVHGRTRQQRYSKLADW-DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 335 ~leeaGvdaItVHgRtr~q~y~g~adw-~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
.+.++|+|.|-+-.-.. .+. +.+..+++..+ ++|+++.||| +.+.+.++.. +|+|+|++|.-
T Consensus 198 ~A~~~gaD~I~ld~~~p-------~~l~~~~~~~~~~~~-~i~i~AsGGI-~~~ni~~~~~--~Gvd~I~vsai 260 (272)
T cd01573 198 AAAEAGADILQLDKFSP-------EELAELVPKLRSLAP-PVLLAAAGGI-NIENAAAYAA--AGADILVTSAP 260 (272)
T ss_pred HHHHcCCCEEEECCCCH-------HHHHHHHHHHhccCC-CceEEEECCC-CHHHHHHHHH--cCCcEEEEChh
Confidence 34579999998853221 122 22333433323 6999999999 8899999776 89999977743
No 398
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=91.36 E-value=1.2 Score=45.77 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 319 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR 319 (540)
.+.+...+-|+... +.|+|.||||++-+ ....++++..+|+.+++.+++||+|-..
T Consensus 22 ~d~~~i~~~A~~~~-~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT~ 77 (261)
T PRK07535 22 KDAAFIQKLALKQA-EAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDSP 77 (261)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 45566666666555 57999999998722 1345778999999998888999998543
No 399
>PRK02227 hypothetical protein; Provisional
Probab=91.28 E-value=3.6 Score=41.70 Aligned_cols=119 Identities=20% Similarity=0.254 Sum_probs=70.0
Q ss_pred hCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEE
Q 009196 266 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 345 (540)
Q Consensus 266 ~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaIt 345 (540)
.+|+|.||+-- |. ..--| -.-|..+.+|+..+... .|||..+---..+ ...+..-+..+..+|+|+|-
T Consensus 18 ~~GaDiIDvK~--P~----~GaLG---A~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~-p~~~~~aa~~~a~~GvDyVK 85 (238)
T PRK02227 18 AGGADIIDVKN--PK----EGSLG---ANFPWVIREIVAAVPGR--KPVSATIGDVPYK-PGTISLAALGAAATGADYVK 85 (238)
T ss_pred hcCCCEEEccC--CC----CCCCC---CCCHHHHHHHHHHhCCC--CCceeeccCCCCC-chHHHHHHHHHHhhCCCEEE
Confidence 46999999941 21 11122 24567777888777643 6999865422222 23444445556779999997
Q ss_pred EecccccCccCCCcC----HHHHHHH----HHHcCCCceEEEeC--CCC-----CHHHHHHHHhcCCCcCeeeec
Q 009196 346 VHGRTRQQRYSKLAD----WDYIYQC----ARKASDDLQVLGNG--DIY-----SYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 346 VHgRtr~q~y~g~ad----w~~I~~i----~~~~~~~IPVIgNG--dI~-----s~eDa~~~l~~~~gaDgVMIG 405 (540)
|- .| +..+ .+.+..+ +...+ +..|++++ |-. ++.++..+..+ .|++++||=
T Consensus 86 vG------l~-~~~~~~~~~~~~~~v~~a~~~~~~-~~~vVav~yaD~~r~~~~~~~~l~~~a~~-aGf~g~MlD 151 (238)
T PRK02227 86 VG------LY-GGKTAEEAVEVMKAVVRAVKDLDP-GKIVVAAGYADAHRVGSVSPLSLPAIAAD-AGFDGAMLD 151 (238)
T ss_pred Ec------CC-CCCcHHHHHHHHHHHHHhhhhcCC-CCeEEEEEecccccccCCChHHHHHHHHH-cCCCEEEEe
Confidence 72 22 1111 2333322 22222 56777766 322 66777787776 899999994
No 400
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.25 E-value=1.6 Score=43.25 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=77.5
Q ss_pred ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 009196 312 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 391 (540)
Q Consensus 312 iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 391 (540)
.+|..=+|. ++.+++.++++.|.+.|+..|-|.-|+ +.-++.|+++++..+ + -+||.|-|.|.+++..
T Consensus 8 ~~liaVlr~---~~~e~a~~~~~al~~~Gi~~iEit~~t-------~~a~~~i~~l~~~~~-~-~~vGAGTVl~~~~a~~ 75 (204)
T TIGR01182 8 AKIVPVIRI---DDVDDALPLAKALIEGGLRVLEVTLRT-------PVALDAIRLLRKEVP-D-ALIGAGTVLNPEQLRQ 75 (204)
T ss_pred CCEEEEEec---CCHHHHHHHHHHHHHcCCCEEEEeCCC-------ccHHHHHHHHHHHCC-C-CEEEEEeCCCHHHHHH
Confidence 355555675 356789999999999999999997654 344678999998885 3 5799999999999999
Q ss_pred HHhcCCCcCeeeecHHHHhCCCchHHHHhcC-CC---CCCHHHHHH
Q 009196 392 HKSDCPELASCMIARGALIKPWIFTEIKEQR-HW---DITSGERLN 433 (540)
Q Consensus 392 ~l~~~~gaDgVMIGRgaL~nPwif~eik~~~-~~---~~s~~erl~ 433 (540)
+++ .||+.++-= + .+|.+.+..++.. ++ -.|++|-..
T Consensus 76 a~~--aGA~FivsP-~--~~~~v~~~~~~~~i~~iPG~~TptEi~~ 116 (204)
T TIGR01182 76 AVD--AGAQFIVSP-G--LTPELAKHAQDHGIPIIPGVATPSEIML 116 (204)
T ss_pred HHH--cCCCEEECC-C--CCHHHHHHHHHcCCcEECCCCCHHHHHH
Confidence 887 799998532 3 2777777666542 22 346777544
No 401
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.22 E-value=1.5 Score=42.31 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=68.7
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
|+..=+|. .+..++..+++.+.+.|++.|.|.-++ +...+.++.+++.++ -..||.|.|.+.+++..+
T Consensus 5 ~~~~i~r~---~~~~~~~~~~~~l~~~G~~~vev~~~~-------~~~~~~i~~l~~~~~--~~~iGag~v~~~~~~~~a 72 (190)
T cd00452 5 PLVAVLRG---DDAEDALALAEALIEGGIRAIEITLRT-------PGALEAIRALRKEFP--EALIGAGTVLTPEQADAA 72 (190)
T ss_pred cEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCC--CCEEEEEeCCCHHHHHHH
Confidence 45555665 356788999999999999999997543 234567889988874 356899999999999998
Q ss_pred HhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 393 KSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 393 l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
++ .|+|+|+++- .+|.+....+.
T Consensus 73 ~~--~Ga~~i~~p~---~~~~~~~~~~~ 95 (190)
T cd00452 73 IA--AGAQFIVSPG---LDPEVVKAANR 95 (190)
T ss_pred HH--cCCCEEEcCC---CCHHHHHHHHH
Confidence 87 7999998762 35556555554
No 402
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=91.20 E-value=1.7 Score=42.93 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=69.1
Q ss_pred ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 009196 312 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 391 (540)
Q Consensus 312 iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 391 (540)
.+|..=+|. .+.+++.++++.+.+.|+..|-|.-++ +...+.++.+++..+ .--+||.|-|.+.+++..
T Consensus 10 ~~~~~v~r~---~~~~~~~~~~~a~~~gGi~~iEvt~~~-------~~~~~~i~~l~~~~~-~~~~iGaGTV~~~~~~~~ 78 (206)
T PRK09140 10 LPLIAILRG---ITPDEALAHVGALIEAGFRAIEIPLNS-------PDPFDSIAALVKALG-DRALIGAGTVLSPEQVDR 78 (206)
T ss_pred CCEEEEEeC---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHcC-CCcEEeEEecCCHHHHHH
Confidence 355555776 356789999999999999999996443 334468899988874 224899999999999999
Q ss_pred HHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 392 HKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 392 ~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
+++ .|||+++.+- .++.+.+...
T Consensus 79 a~~--aGA~fivsp~---~~~~v~~~~~ 101 (206)
T PRK09140 79 LAD--AGGRLIVTPN---TDPEVIRRAV 101 (206)
T ss_pred HHH--cCCCEEECCC---CCHHHHHHHH
Confidence 887 7999999862 3444444443
No 403
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.19 E-value=1.6 Score=43.11 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=77.4
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
||..=+|. .+.+++..+++.|.+.|+..|-|.-|+ +.-.+.|+++++..+ --+||.|-|.|.+++.++
T Consensus 5 ~vv~Vir~---~~~~~a~~ia~al~~gGi~~iEit~~t-------p~a~~~I~~l~~~~~--~~~vGAGTVl~~e~a~~a 72 (201)
T PRK06015 5 PVIPVLLI---DDVEHAVPLARALAAGGLPAIEITLRT-------PAALDAIRAVAAEVE--EAIVGAGTILNAKQFEDA 72 (201)
T ss_pred CEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHCC--CCEEeeEeCcCHHHHHHH
Confidence 45555675 356789999999999999999997654 334578999998885 367999999999999998
Q ss_pred HhcCCCcCeeeecHHHHhCCCchHHHHhcCC-C---CCCHHHHHHHH
Q 009196 393 KSDCPELASCMIARGALIKPWIFTEIKEQRH-W---DITSGERLNIM 435 (540)
Q Consensus 393 l~~~~gaDgVMIGRgaL~nPwif~eik~~~~-~---~~s~~erl~il 435 (540)
++ .|++.++-= -.+|.+.+..++... + -.|++|-+.-+
T Consensus 73 i~--aGA~FivSP---~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~ 114 (201)
T PRK06015 73 AK--AGSRFIVSP---GTTQELLAAANDSDVPLLPGAATPSEVMALR 114 (201)
T ss_pred HH--cCCCEEECC---CCCHHHHHHHHHcCCCEeCCCCCHHHHHHHH
Confidence 87 799988642 156666666554321 1 34677755443
No 404
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=91.15 E-value=0.89 Score=48.11 Aligned_cols=137 Identities=14% Similarity=0.139 Sum_probs=85.3
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEE-----------eCCCCCHHHHHHHH
Q 009196 325 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLG-----------NGDIYSYLDWNKHK 393 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIg-----------NGdI~s~eDa~~~l 393 (540)
+.+++.+.++.+.+.|+..|.+.+..... +....-.+.+..|++..+ ++.+.+ +-|+.+.+.+.++.
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~-~~~~~~~~i~~~Ik~~~~-~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPD-LDGDFYLDILRAVKEEVP-GMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCC-CCHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34678888899999999999998543211 111111356777777765 577765 45777877777744
Q ss_pred hcCCCcCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHh
Q 009196 394 SDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTC 468 (540)
Q Consensus 394 ~~~~gaDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~~ 468 (540)
+ .|+|.+..+..-..+|.++.+|..+ ..+..++++.++.-.+.++.....--.|+..+...+.+.+.++.
T Consensus 149 -e-AGl~~i~~~~~E~~~~~v~~~i~~~---~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr 218 (343)
T TIGR03551 149 -E-AGLDSMPGTAAEILDDEVRKVICPD---KLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILR 218 (343)
T ss_pred -H-hCcccccCcchhhcCHHHHHhcCCC---CCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHH
Confidence 4 7999987433334566666666422 24678999999888887776433223444444444444444433
No 405
>TIGR03586 PseI pseudaminic acid synthase.
Probab=91.06 E-value=6.8 Score=41.58 Aligned_cols=83 Identities=14% Similarity=0.089 Sum_probs=58.8
Q ss_pred cccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCC-cEEEEecccccCccCCCcCHHHHHHH
Q 009196 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGA-SAVTVHGRTRQQRYSKLADWDYIYQC 367 (540)
Q Consensus 289 GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGv-daItVHgRtr~q~y~g~adw~~I~~i 367 (540)
||.-+.+..++..+-+ .++||.+|.-++ +..++...+..+.+.|. +.+.+|+-+.........|+..|..+
T Consensus 117 ~S~~~~n~~LL~~va~-----~gkPvilstG~~---t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~l 188 (327)
T TIGR03586 117 ASFEITDLPLIRYVAK-----TGKPIIMSTGIA---TLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDL 188 (327)
T ss_pred CCccccCHHHHHHHHh-----cCCcEEEECCCC---CHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHH
Confidence 5666778887776543 489999976653 56778888888899998 56667863322111223578999999
Q ss_pred HHHcCCCceEEEeC
Q 009196 368 ARKASDDLQVLGNG 381 (540)
Q Consensus 368 ~~~~~~~IPVIgNG 381 (540)
++.+ ++||..++
T Consensus 189 k~~f--~~pVG~SD 200 (327)
T TIGR03586 189 AERF--NVPVGLSD 200 (327)
T ss_pred HHHh--CCCEEeeC
Confidence 9988 69996664
No 406
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=91.01 E-value=5 Score=40.72 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=78.2
Q ss_pred cCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHH
Q 009196 285 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 364 (540)
Q Consensus 285 ~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I 364 (540)
+...|=.+..+.+++..+++.+++. ++.||+-|-+ + .+-++...+.|++.|-+|...-...+.. .....+
T Consensus 101 TTegGldv~~~~~~l~~~i~~L~~~-gIrVSLFidP----~----~~qi~~A~~~GAd~VELhTG~yA~a~~~-~~~~el 170 (239)
T PRK05265 101 TTEGGLDVAGQFDKLKPAIARLKDA-GIRVSLFIDP----D----PEQIEAAAEVGADRIELHTGPYADAKTE-AEAAEL 170 (239)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC----C----HHHHHHHHHhCcCEEEEechhhhcCCCc-chHHHH
Confidence 3455777888999999999999764 8888886643 1 2345666788999999996543333322 222223
Q ss_pred HHHH------HHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 365 YQCA------RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 365 ~~i~------~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
.+++ ... .+-|=+..|+ +++.+..+ ...+++.-|-||.+++.+-
T Consensus 171 ~~~~~aa~~a~~l--GL~VnAGHgL-ny~Nv~~i-~~ip~i~EvnIGHsiia~A 220 (239)
T PRK05265 171 ERIAKAAKLAASL--GLGVNAGHGL-NYHNVKPI-AAIPGIEELNIGHAIIARA 220 (239)
T ss_pred HHHHHHHHHHHHc--CCEEecCCCC-CHHhHHHH-hhCCCCeEEccCHHHHHHH
Confidence 3332 334 5778887888 88888875 4458999999999887543
No 407
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=91.00 E-value=2.2 Score=45.91 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=37.1
Q ss_pred CCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 356 SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 356 ~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+...|+.|+.+++.. ++|||.- +|.+++|+..+++ .|||+|.|+
T Consensus 208 ~~~~tW~di~wlr~~~--~~PiivK-gV~~~~dA~~a~~--~Gvd~I~Vs 252 (367)
T PLN02493 208 DRTLSWKDVQWLQTIT--KLPILVK-GVLTGEDARIAIQ--AGAAGIIVS 252 (367)
T ss_pred CCCCCHHHHHHHHhcc--CCCEEee-cCCCHHHHHHHHH--cCCCEEEEC
Confidence 3456899999999988 7998865 4579999999876 799999774
No 408
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=90.93 E-value=0.74 Score=47.55 Aligned_cols=85 Identities=9% Similarity=0.091 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCH-HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH---hcCCCcCe
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW-DYIYQCARKASDDLQVLGNGDIYSYLDWNKHK---SDCPELAS 401 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw-~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l---~~~~gaDg 401 (540)
.+....+++.+.+.|++.|.+-|-|.+..+-....+ ..++.+.+.+.+++|||+.-+. +..++.++. ++ .|||+
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~-~Gad~ 97 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEK-AGADG 97 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHH-hCCCE
Confidence 456778889999999999999988877655433333 4556666766657999976665 666665533 34 79999
Q ss_pred eeecHHHHhCC
Q 009196 402 CMIARGALIKP 412 (540)
Q Consensus 402 VMIGRgaL~nP 412 (540)
||+.-+.+..|
T Consensus 98 v~~~pP~y~~~ 108 (289)
T cd00951 98 ILLLPPYLTEA 108 (289)
T ss_pred EEECCCCCCCC
Confidence 99987777665
No 409
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=90.89 E-value=3.5 Score=40.70 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=89.8
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEec--CCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDIN--MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 320 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN--~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~ 320 (540)
.++.+|..++-..++.-+..+. .+|+|.|-|. =|.=++|++ +=-=+|+++|+.++.|...-+-+
T Consensus 6 ~I~PSIL~~dfanL~~e~~~~l-~~GadwlHlDVMDg~FVpNiT-------------~G~pvV~slR~~~~~~~ffD~Hm 71 (224)
T KOG3111|consen 6 KIAPSILSSDFANLAAECKKML-DAGADWLHLDVMDGHFVPNIT-------------FGPPVVESLRKHTGADPFFDVHM 71 (224)
T ss_pred eechhhhccchHHHHHHHHHHH-HcCCCeEEEeeecccccCCcc-------------cchHHHHHHHhccCCCcceeEEE
Confidence 4566777777666666566665 6799987553 233333322 22246777777766553222222
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEeccc---------------------------------------------ccCcc
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHGRT---------------------------------------------RQQRY 355 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHgRt---------------------------------------------r~q~y 355 (540)
=+ .+..+++..+..+|++.+|+|--. -+.++
T Consensus 72 MV----~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGF 147 (224)
T KOG3111|consen 72 MV----ENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGF 147 (224)
T ss_pred ee----cCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCC
Confidence 11 234567777888888888887421 01112
Q ss_pred CCCcC----HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 356 SKLAD----WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 356 ~g~ad----w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
.|.-. ..-+..+++..| ++-|-..||| +++.+.++.+ .||+.+..|.+.+.-+.
T Consensus 148 GGQkFme~mm~KV~~lR~kyp-~l~ievDGGv-~~~ti~~~a~--AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 148 GGQKFMEDMMPKVEWLREKYP-NLDIEVDGGV-GPSTIDKAAE--AGANMIVAGSAVFGAAD 205 (224)
T ss_pred chhhhHHHHHHHHHHHHHhCC-CceEEecCCc-CcchHHHHHH--cCCCEEEecceeecCCC
Confidence 22111 234556666776 5556699999 7788888665 79999999998876443
No 410
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=90.88 E-value=1.3 Score=43.60 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=72.4
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
++..=+|. ++.+++..+++.|.+.|+..|-|.-|| +.-++.|+.+++..| + -+||.|-|.|.+++.++
T Consensus 9 ~iiaVir~---~~~~~a~~~~~al~~gGi~~iEiT~~t-------~~a~~~I~~l~~~~p-~-~~vGAGTV~~~e~a~~a 76 (196)
T PF01081_consen 9 KIIAVIRG---DDPEDAVPIAEALIEGGIRAIEITLRT-------PNALEAIEALRKEFP-D-LLVGAGTVLTAEQAEAA 76 (196)
T ss_dssp SEEEEETT---SSGGGHHHHHHHHHHTT--EEEEETTS-------TTHHHHHHHHHHHHT-T-SEEEEES--SHHHHHHH
T ss_pred CEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHHCC-C-CeeEEEeccCHHHHHHH
Confidence 45555675 356789999999999999999998765 234688999999886 3 57999999999999999
Q ss_pred HhcCCCcCeeeecHHHHhCCCchHHHHhcCC-C---CCCHHHHHHHH
Q 009196 393 KSDCPELASCMIARGALIKPWIFTEIKEQRH-W---DITSGERLNIM 435 (540)
Q Consensus 393 l~~~~gaDgVMIGRgaL~nPwif~eik~~~~-~---~~s~~erl~il 435 (540)
++ .||+.++-= -.||.+.+..++... + -.|++|-..-+
T Consensus 77 ~~--aGA~FivSP---~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~ 118 (196)
T PF01081_consen 77 IA--AGAQFIVSP---GFDPEVIEYAREYGIPYIPGVMTPTEIMQAL 118 (196)
T ss_dssp HH--HT-SEEEES---S--HHHHHHHHHHTSEEEEEESSHHHHHHHH
T ss_pred HH--cCCCEEECC---CCCHHHHHHHHHcCCcccCCcCCHHHHHHHH
Confidence 97 689988753 256666666555322 1 34677755443
No 411
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=90.88 E-value=4.8 Score=40.78 Aligned_cols=115 Identities=11% Similarity=0.141 Sum_probs=77.0
Q ss_pred cCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHH
Q 009196 285 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 364 (540)
Q Consensus 285 ~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I 364 (540)
+...|=.+..+.+++..+++.++++ ++.||+-|-. + .+-++...+.|++.|-+|...-..-+........+
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP----~----~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el 168 (237)
T TIGR00559 98 TTEGGLDVARLKDKLCELVKRFHAA-GIEVSLFIDA----D----KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEEL 168 (237)
T ss_pred cCCcCchhhhCHHHHHHHHHHHHHC-CCEEEEEeCC----C----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHH
Confidence 3455777888899999999999764 8888886543 1 23456677889999999966533333221111123
Q ss_pred HHH------HHHcCCCceEEEeCCCCCHHHHHHHHhcCCC-cCeeeecHHHHhCC
Q 009196 365 YQC------ARKASDDLQVLGNGDIYSYLDWNKHKSDCPE-LASCMIARGALIKP 412 (540)
Q Consensus 365 ~~i------~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g-aDgVMIGRgaL~nP 412 (540)
.++ +... .+-|-+..|+ +++.+..+... .+ .+-|-||.+++.+-
T Consensus 169 ~~i~~aa~~A~~l--GL~VnAGHgL-ny~Nv~~i~~~-~~~i~EvnIGHsiia~A 219 (237)
T TIGR00559 169 QRIVKASVHAHSL--GLKVNAGHGL-NYHNVKYFAEI-LPYLDELNIGHAIIADA 219 (237)
T ss_pred HHHHHHHHHHHHc--CCEEecCCCC-CHHhHHHHHhC-CCCceEEecCHHHHHHH
Confidence 322 2334 5778777787 88888776554 55 89999999887653
No 412
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=90.61 E-value=24 Score=36.77 Aligned_cols=150 Identities=13% Similarity=0.005 Sum_probs=91.5
Q ss_pred cCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 239 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 239 ~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
....|+++++.+ +..+..+.++.++ .+|+|+|-+ .-|.-. --..+-+.+-.+++.+++++||.+=-
T Consensus 74 ~~~~pvi~gv~~-~t~~~i~~~~~a~-~~Gadav~~--~pP~y~----------~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 74 AGRVPVIAGAGG-GTAQAIEYAQAAE-RAGADGILL--LPPYLT----------EAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred CCCCcEEEecCC-CHHHHHHHHHHHH-HhCCCEEEE--CCCCCC----------CCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 445689999976 7788888888887 789999988 234311 01356677888888888899999876
Q ss_pred cCCCCCChhHHHHHHHHHH-HcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHH-HHHHHhcC
Q 009196 319 RTGYFEGKNRIDSLIADIG-TWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD-WNKHKSDC 396 (540)
Q Consensus 319 R~G~~e~~~~~~~la~~le-eaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eD-a~~~l~~~ 396 (540)
+.|..-. .+++.+|. +.+ ..+.|- ++ ..|+..+.++.+.++.++.|+ +|.= +.+. +...+.
T Consensus 140 ~~g~~l~----~~~l~~L~~~~p-ni~giK-------~s-~~d~~~~~~~~~~~~~~f~vl-~G~d-~~e~~~~~~~~-- 202 (303)
T PRK03620 140 RDNAVLT----ADTLARLAERCP-NLVGFK-------DG-VGDIELMQRIVRALGDRLLYL-GGLP-TAEVFAAAYLA-- 202 (303)
T ss_pred CCCCCCC----HHHHHHHHhhCC-CEEEEE-------eC-CCCHHHHHHHHHHcCCCeEEE-eCCC-cchhhHHHHHh--
Confidence 6664322 33444444 432 222221 11 246777888877665445544 5531 1122 223333
Q ss_pred CCcCeeeecHHHHhCCCchHHHHh
Q 009196 397 PELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 397 ~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
.|++|.+.|-+. .-|.++.++-+
T Consensus 203 ~G~~G~is~~an-~~P~~~~~l~~ 225 (303)
T PRK03620 203 LGVPTYSSAVFN-FVPEIALAFYR 225 (303)
T ss_pred CCCCEEEecHHh-hhHHHHHHHHH
Confidence 699999887554 34666666543
No 413
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.54 E-value=3.1 Score=41.45 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=69.6
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
++..=+|. .+.+++..+++.+.+.|++.|-|.-+ .+.-.+.|+++++..+ + -+||.|-|.+.+++..+
T Consensus 16 ~~iaV~r~---~~~~~a~~i~~al~~~Gi~~iEitl~-------~~~~~~~I~~l~~~~p-~-~~IGAGTVl~~~~a~~a 83 (212)
T PRK05718 16 PVVPVIVI---NKLEDAVPLAKALVAGGLPVLEVTLR-------TPAALEAIRLIAKEVP-E-ALIGAGTVLNPEQLAQA 83 (212)
T ss_pred CEEEEEEc---CCHHHHHHHHHHHHHcCCCEEEEecC-------CccHHHHHHHHHHHCC-C-CEEEEeeccCHHHHHHH
Confidence 55555675 35688999999999999999999743 3344578999998886 3 67999999999999998
Q ss_pred HhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 393 KSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 393 l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
++ .||+.++.= -.+|.+.+..++
T Consensus 84 ~~--aGA~FivsP---~~~~~vi~~a~~ 106 (212)
T PRK05718 84 IE--AGAQFIVSP---GLTPPLLKAAQE 106 (212)
T ss_pred HH--cCCCEEECC---CCCHHHHHHHHH
Confidence 87 799988642 145566665554
No 414
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.53 E-value=2.1 Score=42.58 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=75.0
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCC-ceEEEeCCCCCHHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDD-LQVLGNGDIYSYLDWNK 391 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~-IPVIgNGdI~s~eDa~~ 391 (540)
+|..=+|. ++.+++..+++.|.+.|+..|-|.-|+ +.-.+.|+++++..+.. --+||.|-|.|.+++..
T Consensus 14 ~vi~vir~---~~~~~a~~~~~al~~~Gi~~iEit~~~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~ 83 (213)
T PRK06552 14 GVVAVVRG---ESKEEALKISLAVIKGGIKAIEVTYTN-------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARL 83 (213)
T ss_pred CEEEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCC-------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHH
Confidence 55555676 356789999999999999999997664 33467899999877410 24799999999999999
Q ss_pred HHhcCCCcCeeeecHHHHhCCCchHHHHhcC-CC---CCCHHHHHHH
Q 009196 392 HKSDCPELASCMIARGALIKPWIFTEIKEQR-HW---DITSGERLNI 434 (540)
Q Consensus 392 ~l~~~~gaDgVMIGRgaL~nPwif~eik~~~-~~---~~s~~erl~i 434 (540)
+++ .|++.+|- =-.+|.+.+-.++.. ++ -.|.+|-...
T Consensus 84 a~~--aGA~Fivs---P~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A 125 (213)
T PRK06552 84 AIL--AGAQFIVS---PSFNRETAKICNLYQIPYLPGCMTVTEIVTA 125 (213)
T ss_pred HHH--cCCCEEEC---CCCCHHHHHHHHHcCCCEECCcCCHHHHHHH
Confidence 887 79999882 124555555544422 22 2356664444
No 415
>PLN02389 biotin synthase
Probab=90.50 E-value=3.3 Score=44.78 Aligned_cols=142 Identities=9% Similarity=0.028 Sum_probs=83.0
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHH
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 336 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~l 336 (540)
.+.++.+. ++|+|.+.+|+-. .+..+.+-.+. ...+...+.++.+++. ++++..-+=.|..++.++..+.+..+
T Consensus 178 ~E~l~~Lk-eAGld~~~~~LeT-s~~~y~~i~~~---~s~e~rl~ti~~a~~~-Gi~v~sg~IiGlgEt~edrv~~l~~L 251 (379)
T PLN02389 178 KEQAAQLK-EAGLTAYNHNLDT-SREYYPNVITT---RSYDDRLETLEAVREA-GISVCSGGIIGLGEAEEDRVGLLHTL 251 (379)
T ss_pred HHHHHHHH-HcCCCEEEeeecC-ChHHhCCcCCC---CCHHHHHHHHHHHHHc-CCeEeEEEEECCCCCHHHHHHHHHHH
Confidence 34555666 7899999988743 12122111111 2566666677776553 78887777777777778888888888
Q ss_pred HHc--CCcEEEEecc-----cccCccCCCcCHHHHHHH---HHHcCCCceEEEeCCCCCHHH-HHHHHhcCCCcCeeeec
Q 009196 337 GTW--GASAVTVHGR-----TRQQRYSKLADWDYIYQC---ARKASDDLQVLGNGDIYSYLD-WNKHKSDCPELASCMIA 405 (540)
Q Consensus 337 eea--GvdaItVHgR-----tr~q~y~g~adw~~I~~i---~~~~~~~IPVIgNGdI~s~eD-a~~~l~~~~gaDgVMIG 405 (540)
.+. .++.|.++.- |.-.....+..+++++.+ +=..|..+.-|..|-+.-..+ ....+. .||+++|+|
T Consensus 252 r~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~--~GAN~~~~g 329 (379)
T PLN02389 252 ATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFL--AGANSIFTG 329 (379)
T ss_pred HhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHH--hCCCEEEEC
Confidence 887 5677766432 221111122234444433 334553344455555433344 445454 899999999
Q ss_pred H
Q 009196 406 R 406 (540)
Q Consensus 406 R 406 (540)
=
T Consensus 330 ~ 330 (379)
T PLN02389 330 D 330 (379)
T ss_pred C
Confidence 4
No 416
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.50 E-value=5.1 Score=41.57 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=77.2
Q ss_pred CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEec
Q 009196 269 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHG 348 (540)
Q Consensus 269 ~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHg 348 (540)
+|.|.| |+-++++.+++.. +.+ ++.||.+|=-.+. ..++....+..+.+.|...|.+--
T Consensus 107 vDilQI--------------gAr~~rntdLL~a----~~~-t~kpV~lKrGqf~--s~~e~~~aae~i~~~Gn~~vilcE 165 (281)
T PRK12457 107 ADVLQV--------------PAFLARQTDLVVA----IAK-TGKPVNIKKPQFM--SPTQMKHVVSKCREAGNDRVILCE 165 (281)
T ss_pred CeEEee--------------CchhhchHHHHHH----Hhc-cCCeEEecCCCcC--CHHHHHHHHHHHHHcCCCeEEEEe
Confidence 688888 6778888765544 433 5899999866433 346788888999999999998877
Q ss_pred ccccCccCC-CcCHHHHHHHHHHcCCCceEEEe---------------CCCCCH--HHHHHHHhcCCCcCeeeec
Q 009196 349 RTRQQRYSK-LADWDYIYQCARKASDDLQVLGN---------------GDIYSY--LDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 349 Rtr~q~y~g-~adw~~I~~i~~~~~~~IPVIgN---------------GdI~s~--eDa~~~l~~~~gaDgVMIG 405 (540)
|--.-+|.. ..|...|..+++..+ ++|||.- ||.+.+ .-+...+. .||||+||=
T Consensus 166 RG~~fgy~~~~~D~~~ip~mk~~~t-~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA--~GaDGl~iE 237 (281)
T PRK12457 166 RGSSFGYDNLVVDMLGFRQMKRTTG-DLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMA--VGLAGLFLE 237 (281)
T ss_pred CCCCCCCCCcccchHHHHHHHhhCC-CCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHH--hCCCEEEEE
Confidence 743335554 357778888888633 6899863 333322 22334444 799999986
No 417
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=90.43 E-value=2 Score=42.77 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=63.2
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
||..=+|. ++.+++..+++.|.+.|+.+|-|.-|| +.-.+.|+.+++.++ =-+||.|=|.+++++.++
T Consensus 14 ~vI~Vlr~---~~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a 81 (211)
T COG0800 14 PVVPVIRG---DDVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFP--EALIGAGTVLNPEQARQA 81 (211)
T ss_pred CeeEEEEe---CCHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCc--ccEEccccccCHHHHHHH
Confidence 45444565 456889999999999999999997664 455689999999985 469999999999999998
Q ss_pred HhcCCCcCeee
Q 009196 393 KSDCPELASCM 403 (540)
Q Consensus 393 l~~~~gaDgVM 403 (540)
.. .|++.+.
T Consensus 82 ~~--aGa~fiV 90 (211)
T COG0800 82 IA--AGAQFIV 90 (211)
T ss_pred HH--cCCCEEE
Confidence 76 6888764
No 418
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=90.41 E-value=10 Score=37.62 Aligned_cols=153 Identities=11% Similarity=0.077 Sum_probs=85.4
Q ss_pred hhhhhhcccCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc
Q 009196 231 EWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 310 (540)
Q Consensus 231 e~~ll~~~~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v 310 (540)
..+.++..-.+.++.+=|--.++..+..-+ +. ++|+|.+-+|..++ ++-+.+.++++++ .
T Consensus 46 ~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~--~~-~~Gad~vTvH~~a~----------------~~~i~~~~~~~~~-~ 105 (216)
T PRK13306 46 AVRVLRALYPDKIIVADTKIADAGKILAKM--AF-EAGADWVTVICAAH----------------IPTIKAALKVAKE-F 105 (216)
T ss_pred HHHHHHHHCCCCEEEEEEeecCCcHHHHHH--HH-HCCCCEEEEeCCCC----------------HHHHHHHHHHHHH-c
Confidence 333444443456777777777777665433 44 67999999995322 3345555655543 2
Q ss_pred cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCc-CHHHHHHHHHHcCCCceEEEeCCCCCHHHH
Q 009196 311 DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA-DWDYIYQCARKASDDLQVLGNGDIYSYLDW 389 (540)
Q Consensus 311 ~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~a-dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa 389 (540)
+.-+.|=+-++++ .+ .+ +.+.+.|++-+.+|--...+ ..|.. .-..+..+++....+.-+...|||+ ++.+
T Consensus 106 g~~~~V~llts~~--~~---~l-~~~~~~~~~~~vl~~a~~~~-~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~-~~~~ 177 (216)
T PRK13306 106 NGEIQIELYGNWT--WE---QA-QQWRDAGISQVIYHRSRDAQ-LAGVAWGEKDLNKVKKLSDMGFKVSVTGGLV-VEDL 177 (216)
T ss_pred CCEEEEEECCCCC--HH---HH-HHHHcCChhhhhhhhhhhhh-hcCCCCCHHHHHHHHHHhcCCCeEEEcCCCC-HhhH
Confidence 3333443344331 11 22 34556677766666332222 22211 1123444444432245588999994 5555
Q ss_pred HHHHhcCCCcCeeeecHHHHhCCC
Q 009196 390 NKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 390 ~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
... .+ .++|.+.+||++...+.
T Consensus 178 ~~~-~~-~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 178 KLF-KG-IPVKTFIAGRAIRGAAD 199 (216)
T ss_pred HHH-hc-CCCCEEEECCcccCCCC
Confidence 553 44 58999999999887766
No 419
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=90.39 E-value=6.6 Score=40.11 Aligned_cols=139 Identities=8% Similarity=0.002 Sum_probs=79.3
Q ss_pred HHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHH
Q 009196 258 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 337 (540)
Q Consensus 258 ~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~le 337 (540)
+.++.+. ++|+|.|-++.= -.+.+.+.-.+. .+.+...+.++.++++ ++++.+-+=.|..++.++..+.+..+.
T Consensus 124 e~l~~Lk-~aG~~~v~i~~E-~~~~~~~~i~~~---~s~~~~~~ai~~l~~~-Gi~v~~~~i~Gl~et~~d~~~~~~~l~ 197 (296)
T TIGR00433 124 EQAKRLK-DAGLDYYNHNLD-TSQEFYSNIIST---HTYDDRVDTLENAKKA-GLKVCSGGIFGLGETVEDRIGLALALA 197 (296)
T ss_pred HHHHHHH-HcCCCEEEEccc-CCHHHHhhccCC---CCHHHHHHHHHHHHHc-CCEEEEeEEEeCCCCHHHHHHHHHHHH
Confidence 3445565 789999777643 122222211111 2455566666666554 777776666677677788889999999
Q ss_pred HcCCcEEEEecccc-----cCccCCCcCHHHHHH---HHHHcCCCceEEEeCCCC-CHHHHHH--HHhcCCCcCeeeec
Q 009196 338 TWGASAVTVHGRTR-----QQRYSKLADWDYIYQ---CARKASDDLQVLGNGDIY-SYLDWNK--HKSDCPELASCMIA 405 (540)
Q Consensus 338 eaGvdaItVHgRtr-----~q~y~g~adw~~I~~---i~~~~~~~IPVIgNGdI~-s~eDa~~--~l~~~~gaDgVMIG 405 (540)
+.|++.+.+|.-+. -..+..+...+++.. .+..+| +..|...|+=. ...+... .+. .||+++|+|
T Consensus 198 ~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp-~~~i~~~~~~~~~~~~~~~~~~l~--~G~n~i~~g 273 (296)
T TIGR00433 198 NLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMP-KAEIRLAGGREVNMRELQQAMCFM--AGANSIFVG 273 (296)
T ss_pred hCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCC-cceEEEeCCcchhhhhhHHHHHHH--hcCceEEEc
Confidence 99999998775432 222333222344433 344454 33344344432 3333332 344 789999987
No 420
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.38 E-value=1 Score=47.01 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCCc-CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH---HhcCCCcCe
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA-DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH---KSDCPELAS 401 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~a-dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~---l~~~~gaDg 401 (540)
.+...++++.+.+.|+++|.+-|-|.+..+-... ..+.+..+++.+.+++|||+.-+=.+.+++.++ .++ .|+|+
T Consensus 24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~-~Gad~ 102 (299)
T COG0329 24 EEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK-LGADG 102 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh-cCCCE
Confidence 4567889999999999999999888765433222 245567777777667998864444444444432 334 79999
Q ss_pred eeecHHHHhCCC
Q 009196 402 CMIARGALIKPW 413 (540)
Q Consensus 402 VMIGRgaL~nPw 413 (540)
+|+--..+.+|.
T Consensus 103 il~v~PyY~k~~ 114 (299)
T COG0329 103 ILVVPPYYNKPS 114 (299)
T ss_pred EEEeCCCCcCCC
Confidence 999999999986
No 421
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=90.24 E-value=7.4 Score=40.54 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=74.8
Q ss_pred cccCCchHHHHHHHHhcccccccEEEEec-CCCCCC-----------hhHHHHHHHHHHHcCCcEEEEecccccCccCC-
Q 009196 291 CLLTKPMRMKGIIEATSGTVDKPITIKVR-TGYFEG-----------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK- 357 (540)
Q Consensus 291 aLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G~~e~-----------~~~~~~la~~leeaGvdaItVHgRtr~q~y~g- 357 (540)
.+..|-+...++++.++. .++.|-.-+- +|-.++ -.+..+..+.+++.|+|+|.|.-.|..+.|.+
T Consensus 108 ~~eeNi~~T~~vv~~ah~-~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~ 186 (287)
T PF01116_consen 108 PFEENIAITREVVEYAHA-YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGG 186 (287)
T ss_dssp -HHHHHHHHHHHHHHHHH-TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSS
T ss_pred CHHHHHHHHHHHHHhhhh-hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCC
Confidence 344555666666666654 2555544432 221110 02445556667889999999988888788877
Q ss_pred -Cc--CHHHHHHHHHHcCCCceEEEeCCCCCHH-HHHHHHhcCCCcCeeeecHHHHh
Q 009196 358 -LA--DWDYIYQCARKASDDLQVLGNGDIYSYL-DWNKHKSDCPELASCMIARGALI 410 (540)
Q Consensus 358 -~a--dw~~I~~i~~~~~~~IPVIgNGdI~s~e-Da~~~l~~~~gaDgVMIGRgaL~ 410 (540)
.+ |++.+++|++.++ ++|++.-|+=..++ ++.+++. .|+.=|=|++.+..
T Consensus 187 ~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~--~Gi~KiNi~T~~~~ 240 (287)
T PF01116_consen 187 KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIK--NGISKINIGTELRR 240 (287)
T ss_dssp SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHH--TTEEEEEESHHHHH
T ss_pred CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHH--cCceEEEEehHHHH
Confidence 44 6899999999984 59999999877665 6666665 67877878876653
No 422
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=90.22 E-value=0.9 Score=46.50 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.+..++++.++++|+++|.|- |....|.| .++++..+++.+ ++||...-=|.++.++.+... .|||+|.+=-
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVl--Te~~~F~G--s~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~--~GADaVLLI~ 139 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVL--TEPKFFGG--SLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARA--AGADAVLLIA 139 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE----SCCCHH--HHHHHHHHHHHS--SS-EEEES---SHHHHHHHHH--TT-SEEEEEG
T ss_pred CCHHHHHHHHHhcCCCEEEEE--CCCCCCCC--CHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHH--cCCCEeehhH
Confidence 467899999999999999996 33334444 578899999998 799999999999999999887 7999997654
Q ss_pred HHHhC
Q 009196 407 GALIK 411 (540)
Q Consensus 407 gaL~n 411 (540)
++|.+
T Consensus 140 ~~L~~ 144 (254)
T PF00218_consen 140 AILSD 144 (254)
T ss_dssp GGSGH
T ss_pred HhCCH
Confidence 55543
No 423
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=90.15 E-value=2.5 Score=43.49 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=71.7
Q ss_pred cccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecc---cccCccCCCcCHHHHH
Q 009196 289 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR---TRQQRYSKLADWDYIY 365 (540)
Q Consensus 289 GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgR---tr~q~y~g~adw~~I~ 365 (540)
|+..|+|..++.++ ...++||..|=-++ .+.++.+.-|..+...|-..|.+--| |-+....-.-|...|.
T Consensus 135 GARNMQNF~LLke~-----G~~~kPvLLKRg~~--aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~ 207 (286)
T COG2876 135 GARNMQNFALLKEV-----GRQNKPVLLKRGLS--ATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVP 207 (286)
T ss_pred cccchhhhHHHHHh-----cccCCCeEEecCcc--ccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHH
Confidence 67778888776653 34589999987665 35667777788888999999888654 2221111235888999
Q ss_pred HHHHHcCCCceEEEeCC----CCCHH--HHHHHHhcCCCcCeeeec
Q 009196 366 QCARKASDDLQVLGNGD----IYSYL--DWNKHKSDCPELASCMIA 405 (540)
Q Consensus 366 ~i~~~~~~~IPVIgNGd----I~s~e--Da~~~l~~~~gaDgVMIG 405 (540)
.+++.. ++|||++=- =.++- -+..++. .||||+||-
T Consensus 208 ~~kq~T--HLPVivDpSH~~Grr~lv~pla~AA~A--aGAdglmiE 249 (286)
T COG2876 208 ILKQET--HLPVIVDPSHATGRRDLVEPLAKAAIA--AGADGLMIE 249 (286)
T ss_pred HHHhhc--CCCEEECCCCcccchhhHHHHHHHHHh--ccCCeeEEE
Confidence 999988 899997521 11221 1223343 799999985
No 424
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=90.08 E-value=37 Score=38.19 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=79.5
Q ss_pred cHHHHHHH-HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccccc-EEEEecCCCCCChhHH
Q 009196 252 YPDTLART-VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP-ITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~A-A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iP-VtVKiR~G~~e~~~~~ 329 (540)
.|++..+. .+.+. .+|+|.|-| .+|. ++.+.+...+++++++-..- ..+-+..+...+.+.+
T Consensus 94 y~ddvv~~fv~~a~-~~Gidi~RI--fd~l-------------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~ 157 (499)
T PRK12330 94 YEDEVVDRFVEKSA-ENGMDVFRV--FDAL-------------NDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGF 157 (499)
T ss_pred cchhHHHHHHHHHH-HcCCCEEEE--EecC-------------ChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHH
Confidence 35444333 33444 679999776 4444 34466777777776654322 2333344555577889
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC----CCCCHHHHHHHHhcCCCcCeeee
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG----DIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG----dI~s~eDa~~~l~~~~gaDgVMI 404 (540)
.++++.+.++|++.|.|-.-. +..++..-.+.+..+++.++.++||-.-. |. ....+..+++ .|||.|=.
T Consensus 158 ~~~a~~l~~~Gad~I~IkDta--Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl-A~An~laAie--AGad~vDt 231 (499)
T PRK12330 158 VEQAKRLLDMGADSICIKDMA--ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGV-TLVSLMKAIE--AGVDVVDT 231 (499)
T ss_pred HHHHHHHHHcCCCEEEeCCCc--cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCc-HHHHHHHHHH--cCCCEEEe
Confidence 999999999999999985432 12223234678888888874348876543 22 1223344455 68887743
No 425
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=90.01 E-value=3 Score=40.08 Aligned_cols=95 Identities=11% Similarity=0.136 Sum_probs=56.5
Q ss_pred HHHHHHHhcccc-cc-cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCH-HHHHHHHHHcCCCc
Q 009196 299 MKGIIEATSGTV-DK-PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW-DYIYQCARKASDDL 375 (540)
Q Consensus 299 l~eIv~av~~~v-~i-PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw-~~I~~i~~~~~~~I 375 (540)
+.+.++++++.. .. +|.|-.+. .+ -+..+.++|+|.|-+-.-+ +.+. ..+..++...+ ++
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~-----~e----e~~ea~~~g~d~I~lD~~~-------~~~~~~~v~~l~~~~~-~v 128 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVEN-----LE----EAEEALEAGADIIMLDNMS-------PEDLKEAVEELRELNP-RV 128 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESS-----HH----HHHHHHHTT-SEEEEES-C-------HHHHHHHHHHHHHHTT-TS
T ss_pred HHHHHHHHHHhCCCCceEEEEcCC-----HH----HHHHHHHhCCCEEEecCcC-------HHHHHHHHHHHhhcCC-cE
Confidence 445666666655 23 36665543 22 2444566999999886432 1121 22333333333 79
Q ss_pred eEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCC
Q 009196 376 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413 (540)
Q Consensus 376 PVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 413 (540)
.|.++||| +.+.+.++.. +|+|.+.+|.--..=|+
T Consensus 129 ~ie~SGGI-~~~ni~~ya~--~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 129 KIEASGGI-TLENIAEYAK--TGVDVISVGSLTHSAPP 163 (169)
T ss_dssp EEEEESSS-STTTHHHHHH--TT-SEEEECHHHHSBE-
T ss_pred EEEEECCC-CHHHHHHHHh--cCCCEEEcChhhcCCcc
Confidence 99999999 7888888665 89999999975554443
No 426
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.95 E-value=7.6 Score=37.57 Aligned_cols=122 Identities=14% Similarity=0.036 Sum_probs=71.5
Q ss_pred ecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccE--EEEecCCCCC
Q 009196 248 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPI--TIKVRTGYFE 324 (540)
Q Consensus 248 L~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPV--tVKiR~G~~e 324 (540)
|=..+++...+.++.+. .|++.||+.. |. ....-.++++.+++.. +..+ .+|+- +.
T Consensus 6 lD~~~~~~a~~~~~~l~--~~v~~iev~~--~l--------------~~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~-- 64 (206)
T TIGR03128 6 LDLLDIEEALELAEKVA--DYVDIIEIGT--PL--------------IKNEGIEAVKEMKEAFPDRKVLADLKTM-DA-- 64 (206)
T ss_pred ecCCCHHHHHHHHHHcc--cCeeEEEeCC--HH--------------HHHhCHHHHHHHHHHCCCCEEEEEEeec-cc--
Confidence 33667888888888873 5899999931 11 1111234566665543 3333 34433 11
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcC-HHHHHHHHHHcCCCceEEEe-CCCCC-HHHHHHHHhcCCCcCe
Q 009196 325 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLAD-WDYIYQCARKASDDLQVLGN-GDIYS-YLDWNKHKSDCPELAS 401 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~ad-w~~I~~i~~~~~~~IPVIgN-GdI~s-~eDa~~~l~~~~gaDg 401 (540)
.. ..++.+.++|+++|++|+-+. ... -+.+..+++ . +++++.. =+..+ .+++..+.. .|+|.
T Consensus 65 --~~--~~~~~~~~~Gad~i~vh~~~~------~~~~~~~i~~~~~-~--g~~~~~~~~~~~t~~~~~~~~~~--~g~d~ 129 (206)
T TIGR03128 65 --GE--YEAEQAFAAGADIVTVLGVAD------DATIKGAVKAAKK-H--GKEVQVDLINVKDKVKRAKELKE--LGADY 129 (206)
T ss_pred --hH--HHHHHHHHcCCCEEEEeccCC------HHHHHHHHHHHHH-c--CCEEEEEecCCCChHHHHHHHHH--cCCCE
Confidence 11 137788999999999997531 112 234555554 4 5787753 23333 467766654 59999
Q ss_pred eeec
Q 009196 402 CMIA 405 (540)
Q Consensus 402 VMIG 405 (540)
|.+.
T Consensus 130 v~~~ 133 (206)
T TIGR03128 130 IGVH 133 (206)
T ss_pred EEEc
Confidence 8774
No 427
>PLN02417 dihydrodipicolinate synthase
Probab=89.82 E-value=1.1 Score=46.13 Aligned_cols=87 Identities=16% Similarity=0.062 Sum_probs=60.1
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCc-CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH---hcCCCcC
Q 009196 325 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA-DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK---SDCPELA 400 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~a-dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l---~~~~gaD 400 (540)
+.+...++++.+.+.|++.|.+-|-|.+...-... ..+.++.+.+.+.+++|||+.=+-.+.+++.++. ++ .|||
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~-~Gad 98 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFA-VGMH 98 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHH-cCCC
Confidence 34567888999999999999999887654432222 2345566666666579988554444555555533 34 7999
Q ss_pred eeeecHHHHhCC
Q 009196 401 SCMIARGALIKP 412 (540)
Q Consensus 401 gVMIGRgaL~nP 412 (540)
+||+.-+.+..|
T Consensus 99 av~~~~P~y~~~ 110 (280)
T PLN02417 99 AALHINPYYGKT 110 (280)
T ss_pred EEEEcCCccCCC
Confidence 999998877766
No 428
>PRK08508 biotin synthase; Provisional
Probab=89.71 E-value=3.4 Score=42.55 Aligned_cols=141 Identities=6% Similarity=-0.047 Sum_probs=83.3
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHH
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 336 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~l 336 (540)
.+.++.+. ++|+|.+.+|.-.- .....+-..+ .+++...+.++.+++ .+++++.-+=.|.-|+.++..+++..+
T Consensus 102 ~e~l~~Lk-~aGld~~~~~lEt~-~~~~~~i~~~---~~~~~~l~~i~~a~~-~Gi~v~sg~I~GlGEt~ed~~~~l~~l 175 (279)
T PRK08508 102 VEQLKELK-KAGIFSYNHNLETS-KEFFPKICTT---HTWEERFQTCENAKE-AGLGLCSGGIFGLGESWEDRISFLKSL 175 (279)
T ss_pred HHHHHHHH-HcCCCEEcccccch-HHHhcCCCCC---CCHHHHHHHHHHHHH-cCCeecceeEEecCCCHHHHHHHHHHH
Confidence 44555665 78999999886431 1122111111 345555566666654 477887777778778888999999999
Q ss_pred HHcCCcEEEEecccccCc---cCCCc-CHHHHHHH---HHHcCCCceEEEeCCC-CCHHHHHHHHhcCCCcCeeeec
Q 009196 337 GTWGASAVTVHGRTRQQR---YSKLA-DWDYIYQC---ARKASDDLQVLGNGDI-YSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 337 eeaGvdaItVHgRtr~q~---y~g~a-dw~~I~~i---~~~~~~~IPVIgNGdI-~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+.+.+.|-+|--....+ ...+. .+++++-+ +-.+| +.-|-..||- ....+....... .||+++|+|
T Consensus 176 r~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp-~~~i~~~~gr~~~~~~~~~~~~~-~g~n~~~~g 250 (279)
T PRK08508 176 ASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALP-NARLMVAGGREVVFGERQYEIFE-AGANAIVIG 250 (279)
T ss_pred HcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CceeeecCChhhhchhhHHHHHh-cCCcceeec
Confidence 999999888864221111 11122 23333332 23344 4555566665 333444444443 899999998
No 429
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=89.64 E-value=2.6 Score=41.70 Aligned_cols=90 Identities=14% Similarity=0.227 Sum_probs=65.1
Q ss_pred EEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCC----
Q 009196 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG---- 321 (540)
Q Consensus 246 vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G---- 321 (540)
|.|.+.+.+++.+.++.+. ..|+|.|||.+-+=. . ...+.+.+.+..++..+++|+.+=+|.-
T Consensus 2 v~l~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~---------~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAE-SSGADAVELRLDYLE---------N---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEE--SSHHHHHHHHHHHH-HTTTSEEEEEGGGST---------T---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred EeeCCCCHHHHHHHHHHHH-hcCCCEEEEEecccc---------c---cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 6788999999988888876 349999999753211 1 4567788888888887889998888862
Q ss_pred -CCCChhHHHHHHHHHHHcCCcEEEEec
Q 009196 322 -YFEGKNRIDSLIADIGTWGASAVTVHG 348 (540)
Q Consensus 322 -~~e~~~~~~~la~~leeaGvdaItVHg 348 (540)
+..+.....++...+.+.|+++|.|--
T Consensus 69 ~~~~~~~~~~~ll~~~~~~~~d~iDiE~ 96 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAIRLGPDYIDIEL 96 (224)
T ss_dssp SBSS-HHHHHHHHHHHHHHTSSEEEEEG
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 222346788899999999999999953
No 430
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=89.55 E-value=28 Score=36.02 Aligned_cols=148 Identities=8% Similarity=-0.063 Sum_probs=90.8
Q ss_pred cCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEE
Q 009196 239 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIK 317 (540)
Q Consensus 239 ~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVK 317 (540)
....|+++++.+.+.++..+.|+.++ ++|+|+|=+ .-|.-.. ...+-+.+-.+.|.+++ ++||.+=
T Consensus 68 ~~~~pvi~gv~~~~t~~~i~la~~a~-~~Gad~v~v--~~P~y~~----------~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 68 KDQIALIAQVGSVNLKEAVELGKYAT-ELGYDCLSA--VTPFYYK----------FSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHH-HhCCCEEEE--eCCcCCC----------CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 33468999999999999999999987 789999988 3354221 13456666677776555 6888875
Q ss_pred e---cCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 009196 318 V---RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 394 (540)
Q Consensus 318 i---R~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 394 (540)
- ++|..= ..+++.+|.+.+ ..+-|- ++ ..|+..+.++....+ ++.| .+|.= +.+...+.
T Consensus 135 n~P~~tg~~l----~~~~i~~L~~~p-nv~giK-------~s-~~d~~~~~~~~~~~~-~~~v-~~G~d---~~~~~~l~ 196 (290)
T TIGR00683 135 SIPFLTGVNM----GIEQFGELYKNP-KVLGVK-------FT-AGDFYLLERLKKAYP-NHLI-WAGFD---EMMLPAAS 196 (290)
T ss_pred eCccccccCc----CHHHHHHHhcCC-CEEEEE-------eC-CCCHHHHHHHHHhCC-CCEE-EECch---HHHHHHHH
Confidence 3 334322 234445554432 222221 11 236677788877665 5644 45541 23444454
Q ss_pred cCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 395 DCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 395 ~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
.|++|++.|-+.+. |..+.++-+
T Consensus 197 --~G~~G~i~~~~n~~-P~~~~~i~~ 219 (290)
T TIGR00683 197 --LGVDGAIGSTFNVN-GVRARQIFE 219 (290)
T ss_pred --CCCCEEEecHHHhC-HHHHHHHHH
Confidence 69999998866543 766666654
No 431
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.53 E-value=4.3 Score=43.41 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCC---C----cCHHHHHHHHHHcCCCceEEEeCCCCCHHHH
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSK---L----ADWDYIYQCARKASDDLQVLGNGDIYSYLDW 389 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g---~----adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa 389 (540)
..+..+.+++.|+|+|.|.-.|..+.|.+ | .+|+.+++|++.++ ++|++.-|+=-.++|.
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~ 241 (347)
T PRK09196 175 PEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQEL 241 (347)
T ss_pred HHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHH
Confidence 45555666789999997766666666653 3 68999999999985 5999998877555443
No 432
>PLN02417 dihydrodipicolinate synthase
Probab=89.52 E-value=7.7 Score=39.91 Aligned_cols=83 Identities=8% Similarity=-0.091 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 329 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~ 329 (540)
|.+.+.+-++.+. ..|+++|=++.. .|-...-..+.-.++++.+.+.+ .+||.+-+-. .+..++
T Consensus 20 D~~~~~~~i~~l~-~~Gv~Gi~~~Gs----------tGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~---~~t~~~ 85 (280)
T PLN02417 20 DLEAYDSLVNMQI-ENGAEGLIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS---NSTREA 85 (280)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECcc----------CcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC---ccHHHH
Confidence 5677888888776 579999988731 22222222333334555444444 4788875432 245789
Q ss_pred HHHHHHHHHcCCcEEEEec
Q 009196 330 DSLIADIGTWGASAVTVHG 348 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHg 348 (540)
.++++.++++|+|++.+..
T Consensus 86 i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 86 IHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 9999999999999999864
No 433
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=89.51 E-value=8.4 Score=41.26 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCC---C----cCHHHHHHHHHHcCCCceEEEeCCCCCHHHH
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSK---L----ADWDYIYQCARKASDDLQVLGNGDIYSYLDW 389 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g---~----adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa 389 (540)
..+..+.+++.|+|++.|.-.|..+.|.+ | .+|+.+++|++.++ ++|++.-|+=-.++++
T Consensus 173 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~ 239 (347)
T TIGR01521 173 PEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEW 239 (347)
T ss_pred HHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHh
Confidence 34555556788999998877776667754 3 68999999999884 5999999987766433
No 434
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=89.37 E-value=5.5 Score=40.85 Aligned_cols=119 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
++.+. +. +|.|.| |+.++++.+++..+ ..++.||.+|=-.+. +.++....+..+.+.
T Consensus 86 ~~~va-e~-vDilQI--------------gArn~rn~~LL~a~-----g~t~kpV~lKrG~~~--t~~e~l~aaeyi~~~ 142 (258)
T TIGR01362 86 CEPVA-EV-VDIIQI--------------PAFLCRQTDLLVAA-----AKTGRIVNVKKGQFL--SPWDMKNVVEKVLST 142 (258)
T ss_pred HHHHH-hh-CcEEEe--------------CchhcchHHHHHHH-----hccCCeEEecCCCcC--CHHHHHHHHHHHHHc
Q ss_pred CCcEEEEecccccCccCC-CcCHHHHHHHHHHcCCCceEEEe---------------CCCCCHHHHHHHHhcCCCcCeee
Q 009196 340 GASAVTVHGRTRQQRYSK-LADWDYIYQCARKASDDLQVLGN---------------GDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 340 GvdaItVHgRtr~q~y~g-~adw~~I~~i~~~~~~~IPVIgN---------------GdI~s~eDa~~~l~~~~gaDgVM 403 (540)
|-..|.+--|--.-.|+. ..|+..+..+++ . ++|||.- ||.+++--....-.-..||||+|
T Consensus 143 Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~-~--~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~ 219 (258)
T TIGR01362 143 GNKNILLCERGTSFGYNNLVVDMRSLPIMRE-L--GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLF 219 (258)
T ss_pred CCCcEEEEeCCCCcCCCCcccchhhhHHHHh-c--CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEE
Q ss_pred e
Q 009196 404 I 404 (540)
Q Consensus 404 I 404 (540)
|
T Consensus 220 i 220 (258)
T TIGR01362 220 M 220 (258)
T ss_pred E
No 435
>PRK14567 triosephosphate isomerase; Provisional
Probab=89.34 E-value=1.7 Score=44.41 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=38.9
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHh
Q 009196 374 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 374 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
+++|+.-|.| +++.+.+++.. ..+||+.||++.| +|.-|.+|-+
T Consensus 202 ~v~IlYGGSV-~~~N~~~l~~~-~diDG~LVGgasL-~~~~F~~Ii~ 245 (253)
T PRK14567 202 NIKIVYGGSL-KAENAKDILSL-PDVDGGLIGGASL-KAAEFNEIIN 245 (253)
T ss_pred cceEEEcCcC-CHHHHHHHHcC-CCCCEEEeehhhh-cHHHHHHHHH
Confidence 6899999999 99999998875 8899999999998 8888887754
No 436
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=89.29 E-value=11 Score=37.26 Aligned_cols=141 Identities=10% Similarity=0.070 Sum_probs=85.6
Q ss_pred CCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC
Q 009196 241 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 320 (540)
Q Consensus 241 e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~ 320 (540)
+.++.+|+.|.+.+.+.+.|+.+....|--.|.| |... .| .+.++.+++. ++++.+-.-.
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~-----~g----------l~ai~~L~~~-gi~v~~T~V~ 110 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE-----DG----------LKAIKKLSEE-GIKTNVTAIF 110 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH-----hH----------HHHHHHHHHc-CCceeeEEec
Confidence 4679999999999999999998874334334444 3321 11 2334444332 5666553222
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEe-cccccCccCCCcCHHHHHHHHHHcCC-Cc-eEEEeCCCCCHHHHHHHHhcCC
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVH-GRTRQQRYSKLADWDYIYQCARKASD-DL-QVLGNGDIYSYLDWNKHKSDCP 397 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVH-gRtr~q~y~g~adw~~I~~i~~~~~~-~I-PVIgNGdI~s~eDa~~~l~~~~ 397 (540)
+ ..=+....++|++.|..+ ||....+..| +..+.++.+.+.. ++ .=|...++.++.++.+++. .
T Consensus 111 ----s----~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg---~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~--~ 177 (211)
T cd00956 111 ----S----AAQALLAAKAGATYVSPFVGRIDDLGGDG---MELIREIRTIFDNYGFDTKILAASIRNPQHVIEAAL--A 177 (211)
T ss_pred ----C----HHHHHHHHHcCCCEEEEecChHhhcCCCH---HHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHH--c
Confidence 1 122445567899998765 5554443333 4445554443210 22 3455678999999999776 7
Q ss_pred CcCeeeecHHHHhCCCchHHHHh
Q 009196 398 ELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 398 gaDgVMIGRgaL~nPwif~eik~ 420 (540)
|||.|-+. |.+|+++..
T Consensus 178 Gad~vTv~------~~vl~~l~~ 194 (211)
T cd00956 178 GADAITLP------PDVLEQLLK 194 (211)
T ss_pred CCCEEEeC------HHHHHHHhc
Confidence 99999887 556666543
No 437
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=89.23 E-value=0.44 Score=46.14 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
......-.+.+++...|+|-|-+. .--..+.++++.+ ++|||+.|=|.+.+|+.+++. .||++|.-.
T Consensus 103 S~al~~~~~~i~~~~PD~vEilPg---------~~p~vi~~i~~~~--~~PiIAGGLI~~~e~v~~al~--aGa~aVSTS 169 (175)
T PF04309_consen 103 SSALETGIKQIEQSKPDAVEILPG---------VMPKVIKKIREET--NIPIIAGGLIRTKEDVEEALK--AGADAVSTS 169 (175)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESC---------CHHHHHCCCCCCC--SS-EEEESS--SHHHHHHHCC--TTCEEEEE-
T ss_pred HHHHHHHHHHHhhcCCCEEEEchH---------HHHHHHHHHHHhc--CCCEEeecccCCHHHHHHHHH--cCCEEEEcC
Confidence 445566677788899999988532 1124677777777 699999999999999999997 799999988
Q ss_pred HHHHh
Q 009196 406 RGALI 410 (540)
Q Consensus 406 RgaL~ 410 (540)
..-|+
T Consensus 170 ~~~LW 174 (175)
T PF04309_consen 170 NKELW 174 (175)
T ss_dssp -HHHC
T ss_pred ChHhc
Confidence 77665
No 438
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.12 E-value=3.1 Score=40.42 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=61.0
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 392 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 392 (540)
||..=+|. .+.+++.++++.+.+.|+..|.+.-++ +...+.+..+++.. ..-.++.|-+.+.+++..+
T Consensus 13 ~~~~v~r~---~~~~~~~~~~~~~~~~Gv~~vqlr~k~-------~~~~e~~~~~~~~~--~~~~~g~gtvl~~d~~~~A 80 (187)
T PRK07455 13 RAIAVIRA---PDLELGLQMAEAVAAGGMRLIEITWNS-------DQPAELISQLREKL--PECIIGTGTILTLEDLEEA 80 (187)
T ss_pred CEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------CCHHHHHHHHHHhC--CCcEEeEEEEEcHHHHHHH
Confidence 55555676 356789999999999999999985443 23346677777765 4556888999999999998
Q ss_pred HhcCCCcCeeeecH
Q 009196 393 KSDCPELASCMIAR 406 (540)
Q Consensus 393 l~~~~gaDgVMIGR 406 (540)
++ .|||+|+++-
T Consensus 81 ~~--~gAdgv~~p~ 92 (187)
T PRK07455 81 IA--AGAQFCFTPH 92 (187)
T ss_pred HH--cCCCEEECCC
Confidence 87 7999997763
No 439
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=89.05 E-value=1.2 Score=46.10 Aligned_cols=87 Identities=9% Similarity=-0.008 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHH-cCCcEEEEecccccCcc-CCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH---HhcCCCcC
Q 009196 326 KNRIDSLIADIGT-WGASAVTVHGRTRQQRY-SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH---KSDCPELA 400 (540)
Q Consensus 326 ~~~~~~la~~lee-aGvdaItVHgRtr~q~y-~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~---l~~~~gaD 400 (540)
.+....+++.+.+ .|++.|.+-|-|.+... +..-....++.+.+.+.+++|||+.=+-.+.+++.++ .++ .|||
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~-~Gad 101 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATE-LGYD 101 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHH-cCCC
Confidence 4567888999999 99999999998766433 2222345667777777667999865555566666543 234 7999
Q ss_pred eeeecHHHHhCCC
Q 009196 401 SCMIARGALIKPW 413 (540)
Q Consensus 401 gVMIGRgaL~nPw 413 (540)
+||+--+.+..|.
T Consensus 102 ~v~v~~P~y~~~~ 114 (293)
T PRK04147 102 AISAVTPFYYPFS 114 (293)
T ss_pred EEEEeCCcCCCCC
Confidence 9999998887773
No 440
>PLN02334 ribulose-phosphate 3-epimerase
Probab=88.99 E-value=15 Score=36.45 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=75.4
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHH--HHHHHhcccccccEEEEecC
Q 009196 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMK--GIIEATSGTVDKPITIKVRT 320 (540)
Q Consensus 243 p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~--eIv~av~~~v~iPVtVKiR~ 320 (540)
.+...+.+.++..+.+.++.+. ..|++.|-+.. .+|. . .|.... ++++++++.++.|+.|-+-+
T Consensus 9 ~i~~s~~~~~~~~l~~~l~~~~-~~g~~~ihld~--------~d~~---f--~~~~~~g~~~~~~l~~~~~~~~~vhlmv 74 (229)
T PLN02334 9 IIAPSILSADFANLAEEAKRVL-DAGADWLHVDV--------MDGH---F--VPNLTIGPPVVKALRKHTDAPLDCHLMV 74 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHH-HcCCCEEEEec--------ccCC---c--CCccccCHHHHHHHHhcCCCcEEEEecc
Confidence 4667777788777888888887 67999988842 1110 1 122222 56666766666665554433
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 009196 321 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 400 (540)
Q Consensus 321 G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 400 (540)
. +..+.+..+.++|++.|++|... ... . .....++.+++.- ..+=+..|- -+..+.+...+.. .|+|
T Consensus 75 ~------~p~d~~~~~~~~gad~v~vH~~q-~~~--d-~~~~~~~~i~~~g-~~iGls~~~-~t~~~~~~~~~~~-~~~D 141 (229)
T PLN02334 75 T------NPEDYVPDFAKAGASIFTFHIEQ-AST--I-HLHRLIQQIKSAG-MKAGVVLNP-GTPVEAVEPVVEK-GLVD 141 (229)
T ss_pred C------CHHHHHHHHHHcCCCEEEEeecc-ccc--h-hHHHHHHHHHHCC-CeEEEEECC-CCCHHHHHHHHhc-cCCC
Confidence 1 12345666788999999999762 000 1 1124555555431 012222221 1234455554431 2399
Q ss_pred eeeec
Q 009196 401 SCMIA 405 (540)
Q Consensus 401 gVMIG 405 (540)
.|+++
T Consensus 142 yi~~~ 146 (229)
T PLN02334 142 MVLVM 146 (229)
T ss_pred EEEEE
Confidence 99886
No 441
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=88.96 E-value=0.84 Score=44.33 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=61.6
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
|++++ ++|+-.|-.=---|.+ + +...|-+=|.||..+.+|.+++ .+||..|.|+|-. -=|+.|+..
T Consensus 27 AkIAE-~AGA~AVMaLervPad-i-R~~GGVaRMsDP~~I~eI~~aV----sIPVMAK~RIGHf-------vEAqiLeal 92 (208)
T PF01680_consen 27 AKIAE-EAGAVAVMALERVPAD-I-RAAGGVARMSDPKMIKEIMDAV----SIPVMAKVRIGHF-------VEAQILEAL 92 (208)
T ss_dssp HHHHH-HHT-SEEEE-SS-HHH-H-HHTTS---S--HHHHHHHHHH-----SSEEEEEEETT-H-------HHHHHHHHT
T ss_pred HHHHH-HhCCeEEEEeccCCHh-H-HhcCCccccCCHHHHHHHHHhe----Eeceeecccccee-------ehhhhHHHh
Confidence 45554 6776555332223433 2 3345778889999988887764 7999999999842 237889999
Q ss_pred CCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCee
Q 009196 340 GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC 402 (540)
Q Consensus 340 GvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgV 402 (540)
|+|+|.=+- -. .|||..+ .--+..+ ++|++. |.++.-++..-+. .||..+
T Consensus 93 gVD~IDESE-----VL-TpAD~~~-HI~K~~F--~vPFVc--GarnLGEALRRI~--EGAaMI 142 (208)
T PF01680_consen 93 GVDYIDESE-----VL-TPADEEN-HIDKHNF--KVPFVC--GARNLGEALRRIA--EGAAMI 142 (208)
T ss_dssp T-SEEEEET-----TS---S-SS-----GGG---SS-EEE--EESSHHHHHHHHH--TT-SEE
T ss_pred CCceecccc-----cc-ccccccc-cccchhC--CCCeEe--cCCCHHHHHhhHH--hhhhhh
Confidence 999997542 12 3465443 1123345 688774 3457777777666 466554
No 442
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=88.95 E-value=7.9 Score=42.18 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=86.8
Q ss_pred HHHHH-HHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCCCChhHHH
Q 009196 253 PDTLA-RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 253 p~~~a-~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~ 330 (540)
+++.+ +-++++. +-|.|.+-|= .-|+|++-+..-++++++.- ..-.++-+.++.-.+.+...
T Consensus 96 aDDvVe~Fv~ka~-~nGidvfRiF---------------DAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv 159 (472)
T COG5016 96 ADDVVEKFVEKAA-ENGIDVFRIF---------------DALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYV 159 (472)
T ss_pred chHHHHHHHHHHH-hcCCcEEEec---------------hhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHH
Confidence 34433 3445555 5588887761 23688888888888887643 33444545555556778899
Q ss_pred HHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCC---CHHHHHHHHhcCCCcCee
Q 009196 331 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY---SYLDWNKHKSDCPELASC 402 (540)
Q Consensus 331 ~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~---s~eDa~~~l~~~~gaDgV 402 (540)
++++.|.+.|+|.|.+-.-+ +..++...++.|+.+++.+ ++||..----. +.-.+.++++ .|||++
T Consensus 160 ~~akel~~~g~DSIciKDma--GlltP~~ayelVk~iK~~~--~~pv~lHtH~TsG~a~m~ylkAvE--AGvD~i 228 (472)
T COG5016 160 ELAKELLEMGVDSICIKDMA--GLLTPYEAYELVKAIKKEL--PVPVELHTHATSGMAEMTYLKAVE--AGVDGI 228 (472)
T ss_pred HHHHHHHHcCCCEEEeeccc--ccCChHHHHHHHHHHHHhc--CCeeEEecccccchHHHHHHHHHH--hCcchh
Confidence 99999999999999996432 3344556689999999999 69988643332 2334455565 688876
No 443
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=88.89 E-value=4.1 Score=43.84 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=37.4
Q ss_pred CcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 358 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 358 ~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
...|+.|+.|++.. +.|||.-| |.+++|+..+++ .|||+|.|+
T Consensus 222 ~~~w~~i~~ir~~~--~~pviiKg-V~~~eda~~a~~--~G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLW--PHKLLVKG-IVTAEDAKRCIE--LGADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhC--CCCEEEec-CCCHHHHHHHHH--CCcCEEEEC
Confidence 45799999999998 58999886 999999999887 799999764
No 444
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.86 E-value=4.5 Score=42.27 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=46.6
Q ss_pred HHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 332 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 332 la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
-+..+.++|+|.|-+-.-+ .+.++++.+.++.++.+.++||| +.+.+.++.. +|+|.+.+|.-
T Consensus 209 ea~~a~~agaDiImLDnms----------pe~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~--tGVD~Is~gal 271 (290)
T PRK06559 209 AAEEAAAAGADIIMLDNMS----------LEQIEQAITLIAGRSRIECSGNI-DMTTISRFRG--LAIDYVSSGSL 271 (290)
T ss_pred HHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcCceEEEEECCC-CHHHHHHHHh--cCCCEEEeCcc
Confidence 3445567999999885432 24455555555447899999999 8888888665 89999999963
No 445
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=88.83 E-value=2.6 Score=41.64 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcc-cccccEEEEecCCCCCChhHHHHH
Q 009196 254 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSL 332 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~-~v~iPVtVKiR~G~~e~~~~~~~l 332 (540)
+...+.|.... +.|+|.||||++.-.+.. .........+++..+|+++++ ..++||+|-..- .++
T Consensus 19 ~~a~~~a~~~~-~~GAdiIDIg~~st~p~~----~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~---------~~v 84 (210)
T PF00809_consen 19 DEAVKRAREQV-EAGADIIDIGAESTRPGA----TPVSEEEEMERLVPVLQAIREENPDVPLSIDTFN---------PEV 84 (210)
T ss_dssp HHHHHHHHHHH-HTT-SEEEEESSTSSTTS----SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS---------HHH
T ss_pred HHHHHHHHHHH-HhcCCEEEecccccCCCC----CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCC---------HHH
Confidence 33444455444 579999999977632211 111223456678888888886 558999996542 233
Q ss_pred HHHHHHcCCcEEEE
Q 009196 333 IADIGTWGASAVTV 346 (540)
Q Consensus 333 a~~leeaGvdaItV 346 (540)
++...++|++.|.=
T Consensus 85 ~~~aL~~g~~~ind 98 (210)
T PF00809_consen 85 AEAALKAGADIIND 98 (210)
T ss_dssp HHHHHHHTSSEEEE
T ss_pred HHHHHHcCcceEEe
Confidence 44444458887643
No 446
>PRK08227 autoinducer 2 aldolase; Validated
Probab=88.81 E-value=6 Score=40.80 Aligned_cols=118 Identities=12% Similarity=-0.029 Sum_probs=76.1
Q ss_pred ccCCCeEEEEec------CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc
Q 009196 238 HSSEDLFGVQIC------GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD 311 (540)
Q Consensus 238 ~~~e~p~~vQL~------G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~ 311 (540)
+..+-|+.+ +. ..+++.++.||+++. +.|+|.|-++.- | +.+.++++ +..
T Consensus 137 ~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaa-ELGADiVK~~y~-----------~-------~~f~~vv~----a~~ 192 (264)
T PRK08227 137 LRYGMPVMA-VTAVGKDMVRDARYFSLATRIAA-EMGAQIIKTYYV-----------E-------EGFERITA----GCP 192 (264)
T ss_pred HHhCCcEEE-EecCCCCcCchHHHHHHHHHHHH-HHcCCEEecCCC-----------H-------HHHHHHHH----cCC
Confidence 445556554 33 234677888888887 789999999751 1 33444444 456
Q ss_pred ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 009196 312 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 391 (540)
Q Consensus 312 iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 391 (540)
+||.| .-|...+..++++++....++|+..+.+ ||.--|.-.+ -.+++.+...+ -++. |++++.+
T Consensus 193 vPVvi--aGG~k~~~~~~L~~v~~ai~aGa~Gv~~-GRNIfQ~~~p---~~~~~al~~IV--------h~~~-s~~eA~~ 257 (264)
T PRK08227 193 VPIVI--AGGKKLPERDALEMCYQAIDEGASGVDM-GRNIFQSEHP---VAMIKAVHAVV--------HENE-TAKEAYE 257 (264)
T ss_pred CcEEE--eCCCCCCHHHHHHHHHHHHHcCCceeee-chhhhccCCH---HHHHHHHHHHH--------hCCC-CHHHHHH
Confidence 67775 7776655567888888888899999965 7877666322 23445555433 2444 7777777
Q ss_pred HHh
Q 009196 392 HKS 394 (540)
Q Consensus 392 ~l~ 394 (540)
++.
T Consensus 258 ~~~ 260 (264)
T PRK08227 258 LYL 260 (264)
T ss_pred HHH
Confidence 654
No 447
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.70 E-value=5.4 Score=41.41 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=55.9
Q ss_pred HHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHc-----CC
Q 009196 300 KGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKA-----SD 373 (540)
Q Consensus 300 ~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~-----~~ 373 (540)
.+.|+.++... ..+|.|-.+. .+-+..+.++|+|.|-+-.-+ .+.++++.+.+ +.
T Consensus 170 ~~av~~~r~~~~~~kIeVEv~~---------leea~~a~~agaDiI~LDn~~----------~e~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 170 EEAIRRAKEFSVYKVVEVEVES---------LEDALKAAKAGADIIMLDNMT----------PEEIREVIEALKREGLRE 230 (278)
T ss_pred HHHHHHHHHhCCCCcEEEEeCC---------HHHHHHHHHcCcCEEEECCCC----------HHHHHHHHHHHHhcCcCC
Confidence 34445555433 3556664442 233445567999999886442 22333333322 12
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 374 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 374 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
++.+.++||| +.+.+.++.. +|+|.+.+|.--.
T Consensus 231 ~~~leaSGGI-~~~ni~~yA~--tGvD~Is~galt~ 263 (278)
T PRK08385 231 RVKIEVSGGI-TPENIEEYAK--LDVDVISLGALTH 263 (278)
T ss_pred CEEEEEECCC-CHHHHHHHHH--cCCCEEEeChhhc
Confidence 6899999999 8999999665 8999999996443
No 448
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=88.69 E-value=17 Score=38.99 Aligned_cols=120 Identities=11% Similarity=0.034 Sum_probs=75.4
Q ss_pred CCccccccCCchHHHHHHHHhcccccccEEEEec-CC-CCCC-----------hhHHHHHHHHHHHcCC----cEEEEec
Q 009196 286 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR-TG-YFEG-----------KNRIDSLIADIGTWGA----SAVTVHG 348 (540)
Q Consensus 286 ~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR-~G-~~e~-----------~~~~~~la~~leeaGv----daItVHg 348 (540)
||..-.+.+|-++..++++..+. .+++|-.-+- +| ..+. -.+..+....+++.|+ |+|.|.-
T Consensus 135 DgS~lpfEeNI~~TkevVe~Ah~-~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvai 213 (350)
T PRK09197 135 DLSEEPLEENIEICSKYLERMAK-AGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASF 213 (350)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeec
Confidence 44444566677778887777653 3555544331 21 1110 1133344444566787 9999888
Q ss_pred ccccCccC-CC--cCHHHHHHHHHHcC-------CCceEEEeCCCCCH-HHHHHHHhcCCCcCeeeecHHH
Q 009196 349 RTRQQRYS-KL--ADWDYIYQCARKAS-------DDLQVLGNGDIYSY-LDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 349 Rtr~q~y~-g~--adw~~I~~i~~~~~-------~~IPVIgNGdI~s~-eDa~~~l~~~~gaDgVMIGRga 408 (540)
.|..+.|. +. .+|+.+++|++.++ .++|++.-|+=-.+ +++.+++. .|+.=|=|+..+
T Consensus 214 Gt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~--~GI~KINi~T~l 282 (350)
T PRK09197 214 GNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVS--YGVVKMNIDTDT 282 (350)
T ss_pred ccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHH--CCCeeEEeCcHH
Confidence 88888886 33 47999999998871 14999998887766 56666665 567666666544
No 449
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=88.67 E-value=3.2 Score=42.15 Aligned_cols=115 Identities=13% Similarity=0.202 Sum_probs=73.1
Q ss_pred cCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCc--C--
Q 009196 285 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA--D-- 360 (540)
Q Consensus 285 ~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~a--d-- 360 (540)
+...|=.+..+.+.+..+++.+++. ++.||+-|-.. .+-++...+.|++.|-+|...-..-+.... .
T Consensus 99 TTegGldv~~~~~~l~~~i~~L~~~-gIrvSLFiDP~--------~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~e 169 (239)
T PF03740_consen 99 TTEGGLDVAGNRDRLKPVIKRLKDA-GIRVSLFIDPD--------PEQIEAAKELGADRVELHTGPYANAFDDAEEAEEE 169 (239)
T ss_dssp STTSSB-TCGGHHHHHHHHHHHHHT-T-EEEEEE-S---------HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHH
T ss_pred CCCcCChhhcCHHHHHHHHHHHHhC-CCEEEEEeCCC--------HHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHH
Confidence 4566777888899999999999874 88888877542 244666778999999999654322232111 1
Q ss_pred -HHHHHHH---HHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 361 -WDYIYQC---ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 361 -w~~I~~i---~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
++.+... +... .+-|=+..|+ +++.+..+... .+..-|-||.+++.+-
T Consensus 170 ll~~l~~aa~~a~~l--GL~VnAGHgL-~y~N~~~i~~i-~~i~EvnIGHaiia~A 221 (239)
T PF03740_consen 170 LLERLRDAARYAHEL--GLGVNAGHGL-NYDNVRPIAAI-PPIEEVNIGHAIIARA 221 (239)
T ss_dssp HHHHHHHHHHHHHHT--T-EEEEETT---TTTHHHHHTS-TTEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCEEecCCCC-CHHHHHHHHhC-CCceEEecCHHHHHHH
Confidence 2223222 2334 5888888898 78888886664 8899999999987653
No 450
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=88.66 E-value=10 Score=36.89 Aligned_cols=124 Identities=18% Similarity=0.234 Sum_probs=68.8
Q ss_pred EEecCCc-HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCCC
Q 009196 246 VQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYF 323 (540)
Q Consensus 246 vQL~G~~-p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~~ 323 (540)
++|||-. +++...| . ++|+|.|-+-+--+.+. .-+++.+.+|.+.+...+ .++|.| +
T Consensus 1 vKiCGi~~~ed~~~a----~-~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~v------n 59 (203)
T cd00405 1 VKICGITTLEDALAA----A-EAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFV------N 59 (203)
T ss_pred CEECCCCCHHHHHHH----H-HcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEe------C
Confidence 4678854 4433333 2 46999999875332211 113566677776665522 345544 1
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 324 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 324 e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
++ ..++...+.+.|++.|++|+.. +-+++..+++.+ ..++|-.=++.+..+.........++|.++
T Consensus 60 ~~---~~~i~~ia~~~~~d~Vqlhg~e---------~~~~~~~l~~~~--~~~~i~~i~~~~~~~~~~~~~~~~~aD~il 125 (203)
T cd00405 60 ED---LEEILEIAEELGLDVVQLHGDE---------SPEYCAQLRARL--GLPVIKAIRVKDEEDLEKAAAYAGEVDAIL 125 (203)
T ss_pred CC---HHHHHHHHHhcCCCEEEECCCC---------CHHHHHHHHhhc--CCcEEEEEecCChhhHHHhhhccccCCEEE
Confidence 22 3455566778899999999742 135677777765 344442223444444432222226899986
Q ss_pred e
Q 009196 404 I 404 (540)
Q Consensus 404 I 404 (540)
+
T Consensus 126 ~ 126 (203)
T cd00405 126 L 126 (203)
T ss_pred E
Confidence 5
No 451
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=88.64 E-value=1.3 Score=46.36 Aligned_cols=86 Identities=9% Similarity=0.075 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCCc-CHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH---hcCCCcCe
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA-DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK---SDCPELAS 401 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~a-dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l---~~~~gaDg 401 (540)
.+....+++.+.+.||++|.+-|-|.+..+-... .-+.++.+++.+.+++|||+.=+=.+.+++.++. ++ .|||+
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~-~Gad~ 106 (309)
T cd00952 28 LDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLD-LGADG 106 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHH-hCCCE
Confidence 4567888899999999999998887665432222 2345566677676679988555544556655533 33 79999
Q ss_pred eeecHHHHhCC
Q 009196 402 CMIARGALIKP 412 (540)
Q Consensus 402 VMIGRgaL~nP 412 (540)
||+--..+..|
T Consensus 107 vlv~~P~y~~~ 117 (309)
T cd00952 107 TMLGRPMWLPL 117 (309)
T ss_pred EEECCCcCCCC
Confidence 99998877776
No 452
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=88.61 E-value=9 Score=39.53 Aligned_cols=104 Identities=8% Similarity=0.058 Sum_probs=63.0
Q ss_pred chHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcC--CcEEEEecc--cccC---ccCCCc--CHHHHHH
Q 009196 296 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG--ASAVTVHGR--TRQQ---RYSKLA--DWDYIYQ 366 (540)
Q Consensus 296 p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaG--vdaItVHgR--tr~q---~y~g~a--dw~~I~~ 366 (540)
.+...+.+.......+.|+.+=+.. .+.++..+.++.+++++ +++|.|--. .... .+.+.+ -++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g---~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~ 151 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG---SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKA 151 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec---CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHH
Confidence 3344444444444456788886643 24577889999999874 999988422 1111 111111 2566777
Q ss_pred HHHHcCCCceEEEeC--CCCCHHHHHHHHhcCCCcCeeeec
Q 009196 367 CARKASDDLQVLGNG--DIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 367 i~~~~~~~IPVIgNG--dI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
+++.+ ++||+.=- ++.+..++.+.+++ .|+|++.+.
T Consensus 152 vr~~~--~~pv~vKi~~~~~~~~~~a~~l~~-~G~d~i~v~ 189 (300)
T TIGR01037 152 VKDKT--DVPVFAKLSPNVTDITEIAKAAEE-AGADGLTLI 189 (300)
T ss_pred HHHhc--CCCEEEECCCChhhHHHHHHHHHH-cCCCEEEEE
Confidence 77776 58887543 34444555566666 899999873
No 453
>PRK15108 biotin synthase; Provisional
Probab=88.45 E-value=8.8 Score=40.85 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=80.5
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCcccccCCcccccc--CCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHH
Q 009196 257 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLL--TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 334 (540)
Q Consensus 257 a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl--~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~ 334 (540)
.+.++.+. ++|+|.+.+|+=. .+. .+..+. .+.+...+.++.+++ .++++..-+=.|.-++.++..+.+.
T Consensus 136 ~e~l~~Lk-eAGld~~n~~leT-~p~-----~f~~I~~~~~~~~rl~~i~~a~~-~G~~v~sg~i~GlgEt~ed~v~~~~ 207 (345)
T PRK15108 136 ESQAQRLA-NAGLDYYNHNLDT-SPE-----FYGNIITTRTYQERLDTLEKVRD-AGIKVCSGGIVGLGETVKDRAGLLL 207 (345)
T ss_pred HHHHHHHH-HcCCCEEeecccc-ChH-----hcCCCCCCCCHHHHHHHHHHHHH-cCCceeeEEEEeCCCCHHHHHHHHH
Confidence 44455565 7899999998744 221 112221 234444555555543 3777777777777778888999999
Q ss_pred HHHHc--CCcEEEEecc-----cccCccCCCcCHHHHHHH---HHHcCCCceEEEeCCCCCHHHH-HHHHhcCCCcCeee
Q 009196 335 DIGTW--GASAVTVHGR-----TRQQRYSKLADWDYIYQC---ARKASDDLQVLGNGDIYSYLDW-NKHKSDCPELASCM 403 (540)
Q Consensus 335 ~leea--GvdaItVHgR-----tr~q~y~g~adw~~I~~i---~~~~~~~IPVIgNGdI~s~eDa-~~~l~~~~gaDgVM 403 (540)
.|.+. .++.|.+.-. |.-........+++++.+ +=..|....-|..|-..-..+. ...|. .||+++|
T Consensus 208 ~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~--~Gan~~~ 285 (345)
T PRK15108 208 QLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFM--AGANSIF 285 (345)
T ss_pred HHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHH--cCCcEEE
Confidence 99888 5667766322 211111111234444433 3335532444555553333443 44443 8999999
Q ss_pred ecHHHH
Q 009196 404 IARGAL 409 (540)
Q Consensus 404 IGRgaL 409 (540)
+|--.|
T Consensus 286 ~g~~~l 291 (345)
T PRK15108 286 YGCKLL 291 (345)
T ss_pred ECCccc
Confidence 994344
No 454
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.25 E-value=6.7 Score=40.83 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=56.0
Q ss_pred HHHHHHhccccc--ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceE
Q 009196 300 KGIIEATSGTVD--KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV 377 (540)
Q Consensus 300 ~eIv~av~~~v~--iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPV 377 (540)
.+.++.+++... .+|.|-++. .++ +..+.++|+|.|-+-.-+ .+.++++.+..+...|+
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~t-----lee----a~ea~~~gaDiI~LDn~s----------~e~l~~av~~~~~~~~l 241 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVDT-----LDQ----LEEALELGVDAVLLDNMT----------PDTLREAVAIVAGRAIT 241 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCC-----HHH----HHHHHHcCCCEEEeCCCC----------HHHHHHHHHHhCCCceE
Confidence 345555555542 445554432 222 334458899999885432 24556655555446899
Q ss_pred EEeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 378 LGNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 378 IgNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
.++||| +.+.+.++-. +|+|.+.+|.
T Consensus 242 eaSGGI-~~~ni~~yA~--tGVD~Is~Ga 267 (281)
T PRK06106 242 EASGRI-TPETAPAIAA--SGVDLISVGW 267 (281)
T ss_pred EEECCC-CHHHHHHHHh--cCCCEEEeCh
Confidence 999999 8888888654 8999999996
No 455
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=88.23 E-value=4.3 Score=42.95 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=64.6
Q ss_pred HHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHc
Q 009196 260 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 339 (540)
Q Consensus 260 A~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leea 339 (540)
|++..+++|+|+|+||+-..-+... -.-++.+..+|+.|.+++++|+.|-.....+. +..-+-..|+.+
T Consensus 81 Ak~q~~~~GAd~Idl~~~s~dp~~~--------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~k---D~evleaale~~ 149 (319)
T PRK04452 81 AKKCVEEYGADMITLHLISTDPNGK--------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEK---DAEVLEKVAEAA 149 (319)
T ss_pred HHHHHHHhCCCEEEEECCCCCcccc--------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCC---CHHHHHHHHHHh
Confidence 3343336899999999522211100 01355677889999888999998744322111 222233334433
Q ss_pred CCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC--CCCCHHHHHHHHhcCCCc
Q 009196 340 GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG--DIYSYLDWNKHKSDCPEL 399 (540)
Q Consensus 340 GvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG--dI~s~eDa~~~l~~~~ga 399 (540)
+=....|.+-+. .+|+.+..++... +.||++-. ||.-..+....+.+ .|+
T Consensus 150 ~g~~pLInSat~-------en~~~i~~lA~~y--~~~Vva~s~~Dln~ak~L~~~l~~-~Gi 201 (319)
T PRK04452 150 EGERCLLGSAEE-------DNYKKIAAAAMAY--GHAVIAWSPLDINLAKQLNILLTE-LGV 201 (319)
T ss_pred CCCCCEEEECCH-------HHHHHHHHHHHHh--CCeEEEEcHHHHHHHHHHHHHHHH-cCC
Confidence 322223332221 2588888888887 68888776 44434444443443 344
No 456
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.19 E-value=34 Score=35.20 Aligned_cols=149 Identities=12% Similarity=0.073 Sum_probs=90.9
Q ss_pred cCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 239 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 239 ~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
....|+++++.+.+.++..+.|+.++ ++|+|+|=+- =|.-. .-..+-+.+-.+.+.+++++||.+=-
T Consensus 68 ~~~~~vi~gv~~~~~~~~i~~a~~a~-~~G~d~v~~~--pP~~~----------~~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 68 NGRVPVIAGTGSNSTAEAIELTKFAE-KAGADGALVV--TPYYN----------KPTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred CCCCcEEeecCCchHHHHHHHHHHHH-HcCCCEEEEC--CCcCC----------CCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 33468999999999999999999987 7899999883 23311 11346677777777777788988753
Q ss_pred ---cCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 009196 319 ---RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 395 (540)
Q Consensus 319 ---R~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 395 (540)
+.|..- ..+++.+|.+.+ ..+-+- ++ ..|...+.++.+..+.++.|+...|-. +...+.
T Consensus 135 ~P~~~g~~l----~~~~~~~L~~~p-~v~giK-------~s-~~d~~~~~~~~~~~~~~~~v~~G~d~~----~~~~l~- 196 (292)
T PRK03170 135 VPGRTGVDI----LPETVARLAEHP-NIVGIK-------EA-TGDLERVSELIELVPDDFAVYSGDDAL----ALPFLA- 196 (292)
T ss_pred CccccCCCC----CHHHHHHHHcCC-CEEEEE-------EC-CCCHHHHHHHHHhCCCCeEEEECChHh----HHHHHH-
Confidence 233321 235555664432 111111 11 235666777766554345544332211 233344
Q ss_pred CCCcCeeeecHHHHhCCCchHHHHh
Q 009196 396 CPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 396 ~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
.|++|++.|.+.+ -|.++.++-+
T Consensus 197 -~G~~G~is~~~n~-~P~~~~~l~~ 219 (292)
T PRK03170 197 -LGGVGVISVAANV-APKEMAEMCD 219 (292)
T ss_pred -cCCCEEEEhHHhh-hHHHHHHHHH
Confidence 6999999987763 4777766654
No 457
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=88.16 E-value=1.7 Score=43.48 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHH
Q 009196 330 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 409 (540)
Q Consensus 330 ~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 409 (540)
.++-+ +-+.|+..|-|.+|.-. +-..|+.....+.+-++.++-+++-.||+|++|+...-. .|+.+|.||-.++
T Consensus 197 eEm~r-aleiGakvvGvNNRnL~---sFeVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~--~GV~avLVGEslm 270 (289)
T KOG4201|consen 197 EEMQR-ALEIGAKVVGVNNRNLH---SFEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQK--AGVKAVLVGESLM 270 (289)
T ss_pred HHHHH-HHHhCcEEEeecCCccc---eeeechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHH--cCceEEEecHHHH
Confidence 34444 44459999999888643 234577777888887877899999999999999988655 7999999999998
Q ss_pred hC
Q 009196 410 IK 411 (540)
Q Consensus 410 ~n 411 (540)
..
T Consensus 271 k~ 272 (289)
T KOG4201|consen 271 KQ 272 (289)
T ss_pred hc
Confidence 64
No 458
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=88.13 E-value=7.5 Score=40.01 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEec
Q 009196 269 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHG 348 (540)
Q Consensus 269 ~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHg 348 (540)
+|.|.| |+.++++.+++. ++.+ ++.||.+|=-.+ -+.++....+..+.+.|...|.+--
T Consensus 101 ~DilQI--------------gArn~rn~~LL~----a~g~-t~kpV~lKrG~~--~t~~e~~~aaeyi~~~Gn~~vilcE 159 (264)
T PRK05198 101 VDVLQI--------------PAFLCRQTDLLV----AAAK-TGKVVNIKKGQF--LAPWDMKNVVDKVREAGNDKIILCE 159 (264)
T ss_pred CcEEEE--------------CchhcchHHHHH----HHhc-cCCeEEecCCCc--CCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 678888 777888876554 4433 588999986554 3557788889999999999998877
Q ss_pred ccccCccCCC-cCHHHHHHHHHHcCCCceEEEe---------------CCCCCHH--HHHHHHhcCCCcCeeeec
Q 009196 349 RTRQQRYSKL-ADWDYIYQCARKASDDLQVLGN---------------GDIYSYL--DWNKHKSDCPELASCMIA 405 (540)
Q Consensus 349 Rtr~q~y~g~-adw~~I~~i~~~~~~~IPVIgN---------------GdI~s~e--Da~~~l~~~~gaDgVMIG 405 (540)
|--.-.|+.. .|+..+..+++ . ++|||.- ||-+++- -+...+. .||||+||=
T Consensus 160 RG~tf~y~r~~~D~~~vp~~k~-~--~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA--~GadGl~iE 229 (264)
T PRK05198 160 RGTSFGYNNLVVDMRGLPIMRE-T--GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVA--VGVAGLFIE 229 (264)
T ss_pred CCCCcCCCCeeechhhhHHHhh-C--CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHH--cCCCEEEEE
Confidence 7543345432 47777887776 4 5899863 3433322 2334444 799999986
No 459
>PRK15452 putative protease; Provisional
Probab=88.13 E-value=13 Score=41.10 Aligned_cols=121 Identities=8% Similarity=0.029 Sum_probs=76.9
Q ss_pred hCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCC-ChhHHHHHHHHHHHcCCcEE
Q 009196 266 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE-GKNRIDSLIADIGTWGASAV 344 (540)
Q Consensus 266 ~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e-~~~~~~~la~~leeaGvdaI 344 (540)
.+|+|.|=+-. +....+.. +... ..+.+.+.++.+++ -++.|.|.+-.-..+ ....+.++++.+.++|+|+|
T Consensus 21 ~~GADaVY~G~--~~~~~R~~---~~~f-~~edl~eav~~ah~-~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgv 93 (443)
T PRK15452 21 AYGADAVYAGQ--PRYSLRVR---NNEF-NHENLALGINEAHA-LGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDAL 93 (443)
T ss_pred HCCCCEEEECC--Cccchhhh---ccCC-CHHHHHHHHHHHHH-cCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEE
Confidence 57999998832 22222211 0111 12445556655544 255666654433332 23456677788889999999
Q ss_pred EEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeC--CCCCHHHHHHHHhcCCCcCeeeecHHH
Q 009196 345 TVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG--DIYSYLDWNKHKSDCPELASCMIARGA 408 (540)
Q Consensus 345 tVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNG--dI~s~eDa~~~l~~~~gaDgVMIGRga 408 (540)
.| .|+..+..+++..| ++||+++- .|++...+..+ .+ .|++.|.++|-+
T Consensus 94 IV------------~d~G~l~~~ke~~p-~l~ih~stqlni~N~~a~~f~-~~-lG~~rvvLSrEL 144 (443)
T PRK15452 94 IM------------SDPGLIMMVREHFP-EMPIHLSVQANAVNWATVKFW-QQ-MGLTRVILSREL 144 (443)
T ss_pred EE------------cCHHHHHHHHHhCC-CCeEEEEecccCCCHHHHHHH-HH-CCCcEEEECCcC
Confidence 98 46777888888776 68888766 46777777664 44 699999999866
No 460
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=88.07 E-value=34 Score=35.11 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=92.2
Q ss_pred cCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 239 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 239 ~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
....|+++++.+.+.++..+.|+.++ ++|+|+|=+= -|.-. --..+-+.+-.+.+.+++++||.+=-
T Consensus 65 ~~~~~vi~gv~~~s~~~~i~~a~~a~-~~Gad~v~v~--pP~y~----------~~~~~~i~~~~~~i~~~~~~pi~lYn 131 (285)
T TIGR00674 65 NGRVPVIAGTGSNATEEAISLTKFAE-DVGADGFLVV--TPYYN----------KPTQEGLYQHFKAIAEEVDLPIILYN 131 (285)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHHHH-HcCCCEEEEc--CCcCC----------CCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34468999999999999999998887 7899999883 24321 11356677778888777888987643
Q ss_pred ---cCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 009196 319 ---RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 395 (540)
Q Consensus 319 ---R~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 395 (540)
++|..-+ .++..+|.+.+ ..+-+ + ++ ..|+..+.++....+.++.|+...| ..+...+.
T Consensus 132 ~P~~tg~~l~----~~~l~~L~~~~-~v~gi----K---~s-~~d~~~~~~l~~~~~~~~~v~~G~d----~~~~~~~~- 193 (285)
T TIGR00674 132 VPSRTGVSLY----PETVKRLAEEP-NIVAI----K---EA-TGNLERISEIKAIAPDDFVVLSGDD----ALTLPMMA- 193 (285)
T ss_pred CcHHhcCCCC----HHHHHHHHcCC-CEEEE----E---eC-CCCHHHHHHHHHhcCCCeEEEECch----HHHHHHHH-
Confidence 3443222 34455554433 22222 1 11 2467777788776654566554434 22344454
Q ss_pred CCCcCeeeecHHHHhCCCchHHHH
Q 009196 396 CPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 396 ~~gaDgVMIGRgaL~nPwif~eik 419 (540)
.|++|++.|-+.+ -|.++.++-
T Consensus 194 -~G~~G~i~~~~~~-~P~~~~~l~ 215 (285)
T TIGR00674 194 -LGGKGVISVTANV-APKLMKEMV 215 (285)
T ss_pred -cCCCEEEehHHHh-hHHHHHHHH
Confidence 6999999886653 455555554
No 461
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=88.06 E-value=2.8 Score=40.94 Aligned_cols=178 Identities=11% Similarity=0.134 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHhCCCEEEeccceechhccC-Chhhhh-hhhcccCCCeEEEEecCC-cHHHHHHHHHHHHHhCCCCE
Q 009196 195 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG-QASEWA-LLRRHSSEDLFGVQICGA-YPDTLARTVELIDQQCTVDF 271 (540)
Q Consensus 195 ~~vtdlpfR~l~~~~Gadl~~TEmi~a~~l~~g-~~~e~~-ll~~~~~e~p~~vQL~G~-~p~~~a~AA~~~~~~aG~D~ 271 (540)
+|.++..=-++|...|+|++-- +....--+. .....+ +....+ ..+++ ++.+ +++.+.+ ++. .+++|.
T Consensus 4 CGi~~~~da~~~~~~g~d~~Gf--i~~~~S~R~v~~~~a~~l~~~~~-~~~Vg--Vf~~~~~~~I~~---~~~-~~~ld~ 74 (197)
T PF00697_consen 4 CGITRPEDARLAAELGADYLGF--IFYPKSPRYVSPDQARELVSAVP-PKIVG--VFVNQSPEEILE---IVE-ELGLDV 74 (197)
T ss_dssp E---SHHHHHHHHHHTSSEEEE--E--TTCTTB--HHHHHHHHCCSS-SSEEE--EESSS-HHHHHH---HHH-HCTESE
T ss_pred CCCCcHHHHHHHHHcCCCEEee--ecCCCCCCccCHHHHHHHHHhcC-CCEEE--EEcCCCHHHHHH---HHH-HcCCCE
Confidence 3555655556777889976521 211110000 111111 222222 22333 3443 4444444 444 678999
Q ss_pred EEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcC-CcEEEEeccc
Q 009196 272 IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGRT 350 (540)
Q Consensus 272 IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaG-vdaItVHgRt 350 (540)
|.||. .. +... ++.++. ++|+.-.++....-+ .+..+.... ++++.+.++
T Consensus 75 vQLHG-------------~e----~~e~---~~~l~~--~~~vi~~~~v~~~~~------~~~~~~~~~~~d~~LlD~~- 125 (197)
T PF00697_consen 75 VQLHG-------------DE----SPEY---IKLLRA--GLPVIKAIHVDKDID------LLDYLERYESVDYFLLDSG- 125 (197)
T ss_dssp EEE-S-------------GG-----HHH---HHHHHT--TSEEEEEEEESSCHS------CCHHCHCSTT-SEEEEESS-
T ss_pred EEECC-------------CC----CHHH---HHHhhc--CceEEEEEEeCCccc------hHHHHHhcccccEEeEccC-
Confidence 99982 11 2222 233332 467777676643211 122333333 399999833
Q ss_pred ccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCc
Q 009196 351 RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 414 (540)
Q Consensus 351 r~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwi 414 (540)
.++.....||+.+..+.+... +.|++..||| +++.+.+++.. .+..||=+..|.=.+|-.
T Consensus 126 -~GgtG~~~dw~~~~~~~~~~~-~~p~iLAGGl-~p~NV~~ai~~-~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 126 -SGGTGKTFDWSLLKKIVESYS-PKPVILAGGL-NPENVREAIRQ-VRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp -STSSSS---GGGGCCCHHT-G-TSTEEEESS---TTTHHHHHHH-C--SEEEESGGGEEETTE
T ss_pred -CCcCCcccCHHHhhhhhhhcc-cCcEEEEcCC-ChHHHHHHHHh-cCceEEEeCCccccCCCC
Confidence 222233569999999887533 5899999999 78888888886 788999898888776655
No 462
>PLN02389 biotin synthase
Probab=87.90 E-value=3.3 Score=44.74 Aligned_cols=126 Identities=9% Similarity=0.083 Sum_probs=78.3
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCeee
Q 009196 325 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCM 403 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 403 (540)
+.+++.+.|+.+.+.|+..+.+..-.+. ....+..++++.++.+.+. ..+.|..+-|+.+.+.+.++.+ .|+|.+.
T Consensus 117 s~EeIl~~a~~~~~~G~~~~~ivts~rg-~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~Lke--AGld~~~ 193 (379)
T PLN02389 117 SKDDVLEAAKRAKEAGSTRFCMGAAWRD-TVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKE--AGLTAYN 193 (379)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccC-CCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHH--cCCCEEE
Confidence 4577888899999999999877421111 1222234555444333221 1477888888999999988554 7999998
Q ss_pred ecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Q 009196 404 IARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHF 459 (540)
Q Consensus 404 IGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~ 459 (540)
+. +=..|.+|.++.. ..+..+|++.++.-.+.++.-...--.|+..++..
T Consensus 194 ~~--LeTs~~~y~~i~~----~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~ed 243 (379)
T PLN02389 194 HN--LDTSREYYPNVIT----TRSYDDRLETLEAVREAGISVCSGGIIGLGEAEED 243 (379)
T ss_pred ee--ecCChHHhCCcCC----CCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHH
Confidence 83 1112667766642 23778999999998887765432222344344433
No 463
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=87.86 E-value=18 Score=38.37 Aligned_cols=125 Identities=8% Similarity=0.069 Sum_probs=84.3
Q ss_pred CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc--ccEEEEecCCCCCChh
Q 009196 250 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGYFEGKN 327 (540)
Q Consensus 250 G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--iPVtVKiR~G~~e~~~ 327 (540)
...++.+.+.++. ..|+..+-|..|=+ | .+++.-.+.|++|++.++ +.+.|-.--+| +..
T Consensus 87 ~~~~e~~~~~~~~---~~G~~~~KvKVg~~---------~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~w--s~~ 148 (327)
T PRK02901 87 AVDAAQVPEVLAR---FPGCRTAKVKVAEP---------G----QTLADDVARVNAVRDALGPDGRVRVDANGGW--SVD 148 (327)
T ss_pred CCCHHHHHHHHHH---hCCCCEEEEEECCC---------C----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCC--CHH
Confidence 3456554433322 13788777765411 1 245566677888888774 44444444456 457
Q ss_pred HHHHHHHHH-HHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 328 RIDSLIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 328 ~~~~la~~l-eeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
++..+++.| ++.++.+| +|.. .+++..+++++.+ ++||.+.=.+++..|...++.. ..+|.+++=
T Consensus 149 ~Ai~~~~~L~e~~~l~~i-------EqP~---~~~~~la~Lr~~~--~vPIA~DEs~~~~~d~~~l~~~-~a~dvi~ik 214 (327)
T PRK02901 149 EAVAAARALDADGPLEYV-------EQPC---ATVEELAELRRRV--GVPIAADESIRRAEDPLRVARA-GAADVAVLK 214 (327)
T ss_pred HHHHHHHHhhhccCceEE-------ecCC---CCHHHHHHHHHhC--CCCEEeCCCCCCHHHHHHHHHc-CCCCEEEeC
Confidence 899999999 67777766 3332 2367788898888 7999987789999999998876 789988754
No 464
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.75 E-value=35 Score=34.85 Aligned_cols=149 Identities=12% Similarity=0.072 Sum_probs=90.3
Q ss_pred cCCCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 239 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 239 ~~e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
....|+++++.+.+.++..+-|+.++ ++|+|+|=+- -|.-. ....+-+.+-.+.+.+++++||.+=-
T Consensus 67 ~~~~~vi~gv~~~~~~~~~~~a~~a~-~~G~d~v~~~--~P~~~----------~~~~~~l~~~~~~ia~~~~~pi~lYn 133 (284)
T cd00950 67 NGRVPVIAGTGSNNTAEAIELTKRAE-KAGADAALVV--TPYYN----------KPSQEGLYAHFKAIAEATDLPVILYN 133 (284)
T ss_pred CCCCcEEeccCCccHHHHHHHHHHHH-HcCCCEEEEc--ccccC----------CCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 33468999999999999999998887 7899999884 23211 11345666777777777789988753
Q ss_pred ---cCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 009196 319 ---RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 395 (540)
Q Consensus 319 ---R~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 395 (540)
+.|..-+ .+++.+|.+.+ ..+-+- ++ ..++..+.++....+.++.|+...|- .+...+.
T Consensus 134 ~P~~~g~~ls----~~~~~~L~~~p-~v~giK-------~s-~~~~~~~~~~~~~~~~~~~v~~G~d~----~~~~~~~- 195 (284)
T cd00950 134 VPGRTGVNIE----PETVLRLAEHP-NIVGIK-------EA-TGDLDRVSELIALCPDDFAVLSGDDA----LTLPFLA- 195 (284)
T ss_pred ChhHhCCCCC----HHHHHHHhcCC-CEEEEE-------EC-CCCHHHHHHHHHhCCCCeEEEeCChH----hHHHHHH-
Confidence 2333222 33444444331 222221 11 23566677777666445665544331 2333344
Q ss_pred CCCcCeeeecHHHHhCCCchHHHHh
Q 009196 396 CPELASCMIARGALIKPWIFTEIKE 420 (540)
Q Consensus 396 ~~gaDgVMIGRgaL~nPwif~eik~ 420 (540)
.|++|++.|.+.+ -|.++.++-+
T Consensus 196 -~G~~G~~s~~~n~-~p~~~~~~~~ 218 (284)
T cd00950 196 -LGGVGVISVAANV-APKLMAEMVR 218 (284)
T ss_pred -CCCCEEEehHHHh-hHHHHHHHHH
Confidence 6899999998763 4666655543
No 465
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.70 E-value=5 Score=42.38 Aligned_cols=99 Identities=9% Similarity=0.160 Sum_probs=62.4
Q ss_pred CCeEEEEec-------CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccccc
Q 009196 241 EDLFGVQIC-------GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP 313 (540)
Q Consensus 241 e~p~~vQL~-------G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iP 313 (540)
+-++++=+. |-++++..+.++.++ ++|+|.|+++.|...........-......+....+..+.+++.+++|
T Consensus 216 d~~v~vris~~~~~~~g~~~eea~~ia~~Le-~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 294 (338)
T cd04733 216 GFPVGIKLNSADFQRGGFTEEDALEVVEALE-EAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTP 294 (338)
T ss_pred CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCC
Confidence 346777664 567888889999887 789999999988643222110000011112233456777788888999
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHcCCcEEEE
Q 009196 314 ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV 346 (540)
Q Consensus 314 VtVKiR~G~~e~~~~~~~la~~leeaGvdaItV 346 (540)
|.+=-++ .+...+.+.+++.++|.|.+
T Consensus 295 Vi~~G~i------~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 295 LMVTGGF------RTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred EEEeCCC------CCHHHHHHHHHcCCCCeeee
Confidence 9884443 22345556667777998876
No 466
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=87.64 E-value=2.6 Score=45.10 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=34.7
Q ss_pred cCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 359 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 359 adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
..|+.|+.+++.. ++|||.=|= .+++|+..+.+ .|+|+|.|+
T Consensus 212 ~~w~~i~~~~~~~--~~pvivKgv-~~~~da~~~~~--~G~~~i~vs 253 (356)
T PF01070_consen 212 LTWDDIEWIRKQW--KLPVIVKGV-LSPEDAKRAVD--AGVDGIDVS 253 (356)
T ss_dssp -SHHHHHHHHHHC--SSEEEEEEE--SHHHHHHHHH--TT-SEEEEE
T ss_pred CCHHHHHHHhccc--CCceEEEec-ccHHHHHHHHh--cCCCEEEec
Confidence 4699999999998 799998775 89999999776 799999886
No 467
>PRK08508 biotin synthase; Provisional
Probab=87.64 E-value=2.4 Score=43.59 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEe--cccccCccCCCcCHHHHH----HHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 009196 325 GKNRIDSLIADIGTWGASAVTVH--GRTRQQRYSKLADWDYIY----QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 398 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVH--gRtr~q~y~g~adw~~I~----~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 398 (540)
+.+++.+.|+.+.+.|+..+.+. |++ +.. ..++++. .|++..+ .+.+.++-+..+.+.+.++.+ .|
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~~----~~~-~~~e~~~ei~~~ik~~~p-~l~i~~s~G~~~~e~l~~Lk~--aG 112 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGRG----LDD-KKLEYVAEAAKAVKKEVP-GLHLIACNGTASVEQLKELKK--AG 112 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccCC----CCc-ccHHHHHHHHHHHHhhCC-CcEEEecCCCCCHHHHHHHHH--cC
Confidence 34678888888888999988763 332 222 2445444 5555544 577777878889998888554 79
Q ss_pred cCeeeecHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Q 009196 399 LASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYT 467 (540)
Q Consensus 399 aDgVMIGRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~ls~~ 467 (540)
+|.+-++=-. .+.+|.++... .+..+|++.++.-.+.+++--..--.|+..+...+.+.+.++
T Consensus 113 ld~~~~~lEt--~~~~~~~i~~~----~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~l 175 (279)
T PRK08508 113 IFSYNHNLET--SKEFFPKICTT----HTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSL 175 (279)
T ss_pred CCEEcccccc--hHHHhcCCCCC----CCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHH
Confidence 9999875222 24455554322 246788888877666555433222345555555555544444
No 468
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=87.62 E-value=2.2 Score=43.85 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=61.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecC-CCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCC-ChhH
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINM-GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE-GKNR 328 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~-GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e-~~~~ 328 (540)
.+++.+..|+++.. +.|+|.|-.|. ||| +...+++++ .+.||.+ +-|... +..+
T Consensus 163 ~d~~~v~~aaRlaa-elGADIiK~~ytg~~-----------------e~F~~vv~~----~~vpVvi--aGG~k~~~~~~ 218 (265)
T COG1830 163 RDADLVGYAARLAA-ELGADIIKTKYTGDP-----------------ESFRRVVAA----CGVPVVI--AGGPKTETERE 218 (265)
T ss_pred ccHHHHHHHHHHHH-HhcCCeEeecCCCCh-----------------HHHHHHHHh----CCCCEEE--eCCCCCCChHH
Confidence 45678899999887 78999999984 444 444444443 4567776 877766 6678
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCCc
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKLA 359 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~a 359 (540)
++++...+-++|+..+.+ ||.--|.-.+.+
T Consensus 219 ~l~~~~~ai~aGa~G~~~-GRNifQ~~~p~~ 248 (265)
T COG1830 219 FLEMVTAAIEAGAMGVAV-GRNIFQHEDPEA 248 (265)
T ss_pred HHHHHHHHHHccCcchhh-hhhhhccCChHH
Confidence 899999999999999964 787766654433
No 469
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=87.61 E-value=2.4 Score=39.31 Aligned_cols=91 Identities=15% Similarity=0.068 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH----HHhcCCCcCee
Q 009196 327 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK----HKSDCPELASC 402 (540)
Q Consensus 327 ~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~----~l~~~~gaDgV 402 (540)
+...++++.+.+.|+++|.+..+...........+..+..+.+.. ++|++++..+.+..++.. .... .|+|+|
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~-~g~d~v 88 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARA-AGADGV 88 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHH-cCCCEE
Confidence 467889999999999999987665443333322234567777766 699999988887776552 3444 799999
Q ss_pred eecHHHHh----CCCchHHHHh
Q 009196 403 MIARGALI----KPWIFTEIKE 420 (540)
Q Consensus 403 MIGRgaL~----nPwif~eik~ 420 (540)
.|.=+... -+.+.+++++
T Consensus 89 ~l~~~~~~~~~~~~~~~~~i~~ 110 (200)
T cd04722 89 EIHGAVGYLAREDLELIRELRE 110 (200)
T ss_pred EEeccCCcHHHHHHHHHHHHHH
Confidence 99855532 2334555554
No 470
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.58 E-value=10 Score=37.81 Aligned_cols=139 Identities=19% Similarity=0.165 Sum_probs=81.2
Q ss_pred EEecCC--cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecCCC
Q 009196 246 VQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY 322 (540)
Q Consensus 246 vQL~G~--~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~G~ 322 (540)
.|..+. +.++..+.++.+. ++|++.||+=.+.|.+.+ .++.+ ..++++.+++.. +.++.+=+|.+
T Consensus 9 ~q~~~~~~s~e~~~~i~~~L~-~~GV~~IEvg~~~~~~~~-------p~~~~---~~~~i~~l~~~~~~~~~~~l~~~~- 76 (265)
T cd03174 9 LQSEGATFSTEDKLEIAEALD-EAGVDSIEVGSGASPKAV-------PQMED---DWEVLRAIRKLVPNVKLQALVRNR- 76 (265)
T ss_pred ccCCCCCCCHHHHHHHHHHHH-HcCCCEEEeccCcCcccc-------ccCCC---HHHHHHHHHhccCCcEEEEEccCc-
Confidence 344443 5678888888887 789999999777665433 22333 345566665554 55666555554
Q ss_pred CCChhHHHHHHHHHHHcCCcEEEEecccccC------ccCCCcC----HHHHHHHHHHcCCCceEEEeC-CCCC----HH
Q 009196 323 FEGKNRIDSLIADIGTWGASAVTVHGRTRQQ------RYSKLAD----WDYIYQCARKASDDLQVLGNG-DIYS----YL 387 (540)
Q Consensus 323 ~e~~~~~~~la~~leeaGvdaItVHgRtr~q------~y~g~ad----w~~I~~i~~~~~~~IPVIgNG-dI~s----~e 387 (540)
.+.++.+.++|++.|.+..-.... .-+..-. .+.++.+++ . .+.|..+- +++. ++
T Consensus 77 -------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~--G~~v~~~~~~~~~~~~~~~ 146 (265)
T cd03174 77 -------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE-A--GLEVEGSLEDAFGCKTDPE 146 (265)
T ss_pred -------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-C--CCeEEEEEEeecCCCCCHH
Confidence 456888899999999886532210 0000012 233444443 2 46776666 5655 33
Q ss_pred H---HHHHHhcCCCcCeeeecHH
Q 009196 388 D---WNKHKSDCPELASCMIARG 407 (540)
Q Consensus 388 D---a~~~l~~~~gaDgVMIGRg 407 (540)
. +.+.+.+ .|+|.|.+...
T Consensus 147 ~l~~~~~~~~~-~g~~~i~l~Dt 168 (265)
T cd03174 147 YVLEVAKALEE-AGADEISLKDT 168 (265)
T ss_pred HHHHHHHHHHH-cCCCEEEechh
Confidence 3 3333444 68999987644
No 471
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=87.46 E-value=15 Score=36.37 Aligned_cols=143 Identities=12% Similarity=0.002 Sum_probs=79.9
Q ss_pred CeEEEEecCCc-HHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEec
Q 009196 242 DLFGVQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVR 319 (540)
Q Consensus 242 ~p~~vQL~G~~-p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR 319 (540)
.++++=+=-.| +.....+++.+. +.|+|.+-+|.... ++-+...++...+.- ++=+.+.+.
T Consensus 50 ~~i~~DlK~~DIg~tv~~~~~~~~-~~gad~~Tvh~~~G----------------~~~l~~~~~~~~~~~~~~~~v~~ls 112 (216)
T cd04725 50 FLVFLDLKLGDIPNTVAAAAEALL-GLGADAVTVHPYGG----------------SDMLKAALEAAEEKGKGLFAVTVLS 112 (216)
T ss_pred CcEEEEeecCchHHHHHHHHHHHH-hcCCCEEEECCcCC----------------HHHHHHHHHHHhccCCeEEEEEcCC
Confidence 45555554444 455666666665 57999999984322 333444444443221 122223333
Q ss_pred -CCCC--------CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCH----
Q 009196 320 -TGYF--------EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSY---- 386 (540)
Q Consensus 320 -~G~~--------e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~---- 386 (540)
.+.. .....+..+++.+.++|++.+.+.+.- .+.+ ++....+.+ +..+||.-.
T Consensus 113 s~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~----------~~~i---~~~~~~~~~-~ltPGI~~~~~~~ 178 (216)
T cd04725 113 SPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE----------PEAL---RRALGPDFL-ILTPGIGAQGSGD 178 (216)
T ss_pred CCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc----------hHHH---HHhhCCCCe-EEcCCcCCCCCcc
Confidence 1111 122456678888899999888775431 1223 222221455 667777621
Q ss_pred -----HHHHHHHhcCCCcCeeeecHHHHhCCCchHH
Q 009196 387 -----LDWNKHKSDCPELASCMIARGALIKPWIFTE 417 (540)
Q Consensus 387 -----eDa~~~l~~~~gaDgVMIGRgaL~nPwif~e 417 (540)
.+..+++. .|++++.+||+.+..+.-...
T Consensus 179 dq~r~~~~~~a~~--~g~~~ivvGR~I~~a~~p~~~ 212 (216)
T cd04725 179 DQKRGGTPEDAIR--AGADYIVVGRPITQAADPVAA 212 (216)
T ss_pred ccccccCHHHHHH--cCCcEEEEChhhccCCCHHHH
Confidence 13444444 579999999999987764433
No 472
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=87.40 E-value=3.3 Score=42.68 Aligned_cols=139 Identities=9% Similarity=0.035 Sum_probs=83.2
Q ss_pred HHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEe-----------------cccccCccCCCcCH
Q 009196 299 MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH-----------------GRTRQQRYSKLADW 361 (540)
Q Consensus 299 l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVH-----------------gRtr~q~y~g~adw 361 (540)
+.+..+.++..-..-+..=+-.|+ .+.+.+.++++.|.+.|+|+|-+- -|--.++++....+
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~Gd-P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~l 82 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGD-PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTL 82 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCC-CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHH
Confidence 334444444443333444456776 456789999999999999999873 12223344444567
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCC-----HHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHHhcC--C-----CCCCHH
Q 009196 362 DYIYQCARKASDDLQVLGNGDIYS-----YLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR--H-----WDITSG 429 (540)
Q Consensus 362 ~~I~~i~~~~~~~IPVIgNGdI~s-----~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik~~~--~-----~~~s~~ 429 (540)
+.++++++.-. .+|++.-+=.+- .+...+...+ .|+||++|.-=-+.-..-|.+.-+.. . ...+..
T Consensus 83 el~~~~r~~~~-~~Pivlm~Y~Npi~~~Gie~F~~~~~~-~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 83 ELVEEIRAKGV-KVPIVLMTYYNPIFNYGIEKFLRRAKE-AGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred HHHHHHHhcCC-CCCEEEEEeccHHHHhhHHHHHHHHHH-cCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 88888886533 689887765432 3444445555 89999998532222222222222211 1 123567
Q ss_pred HHHHHHHHHHH
Q 009196 430 ERLNIMKDFAR 440 (540)
Q Consensus 430 erl~il~~~~~ 440 (540)
+|++.+.++.+
T Consensus 161 ~rl~~i~~~a~ 171 (265)
T COG0159 161 ERLKKIAEAAS 171 (265)
T ss_pred HHHHHHHHhCC
Confidence 89988888774
No 473
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.39 E-value=7.2 Score=41.44 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEecC-------CCCCcccccCCccccccCCchH----HHHHHHHhccc-ccccEEEEecCC
Q 009196 254 DTLARTVELIDQQCTVDFIDINM-------GCPIDIVVNKGAGSCLLTKPMR----MKGIIEATSGT-VDKPITIKVRTG 321 (540)
Q Consensus 254 ~~~a~AA~~~~~~aG~D~IDIN~-------GCP~~~v~~~G~GsaLl~~p~~----l~eIv~av~~~-v~iPVtVKiR~G 321 (540)
+...+..+.+. .+|+.+|.+-. |-|.+.+..-....++++..-+ +...++.+++. .++||.|-|--.
T Consensus 69 ~~~~~~~~~~~-~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~ 147 (344)
T PRK05286 69 DKNGEAIDALG-ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKN 147 (344)
T ss_pred CCChHHHHHHH-HcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 33445555555 67999998853 3444444322111223332211 33333333332 578888866321
Q ss_pred -C---CCChhHHHHHHHHHHHcCCcEEEEecc---cccCc--cCCCcCHHHHHHHHHHcCC---CceEEE--eCCCC--C
Q 009196 322 -Y---FEGKNRIDSLIADIGTWGASAVTVHGR---TRQQR--YSKLADWDYIYQCARKASD---DLQVLG--NGDIY--S 385 (540)
Q Consensus 322 -~---~e~~~~~~~la~~leeaGvdaItVHgR---tr~q~--y~g~adw~~I~~i~~~~~~---~IPVIg--NGdI~--s 385 (540)
. .....+..++++.+.+ ++|+|.+--- +...+ ..+..-.+.++.+++.+.. ++||+. +-++. +
T Consensus 148 ~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~ 226 (344)
T PRK05286 148 KDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEE 226 (344)
T ss_pred CCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHH
Confidence 0 1123456666666654 5999987311 11111 1111123566777777631 188873 44443 2
Q ss_pred HHHHHHHHhcCCCcCeeeec
Q 009196 386 YLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 386 ~eDa~~~l~~~~gaDgVMIG 405 (540)
..++.+.+.+ .|||+|.+-
T Consensus 227 ~~~ia~~l~~-~Gadgi~~~ 245 (344)
T PRK05286 227 LDDIADLALE-HGIDGVIAT 245 (344)
T ss_pred HHHHHHHHHH-hCCcEEEEe
Confidence 4445555665 799998664
No 474
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=87.27 E-value=4.1 Score=44.17 Aligned_cols=118 Identities=9% Similarity=0.010 Sum_probs=81.7
Q ss_pred hCCCCEEEecCC-CCCcccccCCccccccCCchHHHHHHHHhcccc--cccEEEEecCCCCCChhHHHHHHHHHHHcCCc
Q 009196 266 QCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGAS 342 (540)
Q Consensus 266 ~aG~D~IDIN~G-CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~~~la~~leeaGvd 342 (540)
+.||..+-|..| -|. .| ...++.-.+.|+++|+++ ++.+.|-.-.+| +...+.++++.|++.|+.
T Consensus 170 ~~Gf~~~Kik~~~g~~-----~g-----~~~~~~di~~v~avReavG~d~~l~vDaN~~~--~~~~Ai~~~~~le~~~l~ 237 (394)
T PRK15440 170 EMGFIGGKMPLHHGPA-----DG-----DAGLRKNAAMVADMREKVGDDFWLMLDCWMSL--DVNYATKLAHACAPYGLK 237 (394)
T ss_pred hCCCCEEEEcCCcCcc-----cc-----hHHHHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHHHHHhhhcCCc
Confidence 469999988753 121 01 023456678889999888 467777766667 457899999999999988
Q ss_pred EEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 343 AVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 343 aItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
++ +|.. .+-|++-.+++++.++.+|||.+.=.+.+..++..+++. ..+|.|++
T Consensus 238 wi-------EEPl-~~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~-~a~Divq~ 290 (394)
T PRK15440 238 WI-------EECL-PPDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEM-GCIDIIQP 290 (394)
T ss_pred ce-------eCCC-CcccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHc-CCCCEEeC
Confidence 77 3433 345788889999987312444433356789999998885 67888764
No 475
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=87.20 E-value=5 Score=39.65 Aligned_cols=92 Identities=10% Similarity=0.107 Sum_probs=69.1
Q ss_pred HHHHHHhcccc--cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceE
Q 009196 300 KGIIEATSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV 377 (540)
Q Consensus 300 ~eIv~av~~~v--~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPV 377 (540)
.+.++++++.+ ++.+.+-.-.+|+ ..++.++++.|++.++.+| +|.. .+.+++..+++++.. ++||
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~--~~~a~~~~~~l~~~~i~~i-------EeP~-~~~d~~~~~~L~~~~--~~pI 148 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWT--PKEAIRLIRALEKYGLAWI-------EEPC-APDDLEGYAALRRRT--GIPI 148 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCC--HHHHHHHHHHhhhcCCCeE-------ECCC-CccCHHHHHHHHhhC--CCCE
Confidence 67778888776 4566666666663 5789999999998887776 3433 335788889999887 7999
Q ss_pred EEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 378 LGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 378 IgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
.+.=.+.++.+...++.. ..+|.+.+
T Consensus 149 a~dEs~~~~~~~~~~~~~-~~~d~~~~ 174 (229)
T cd00308 149 AADESVTTVDDALEALEL-GAVDILQI 174 (229)
T ss_pred EeCCCCCCHHHHHHHHHc-CCCCEEec
Confidence 986668899999887775 67787764
No 476
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=87.18 E-value=7.8 Score=41.13 Aligned_cols=149 Identities=13% Similarity=0.177 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecC-------CCCCcccccCCccccccCCc----hHHHHHHHHhcc-cccccEEEEecC
Q 009196 253 PDTLARTVELIDQQCTVDFIDINM-------GCPIDIVVNKGAGSCLLTKP----MRMKGIIEATSG-TVDKPITIKVRT 320 (540)
Q Consensus 253 p~~~a~AA~~~~~~aG~D~IDIN~-------GCP~~~v~~~G~GsaLl~~p----~~l~eIv~av~~-~v~iPVtVKiR~ 320 (540)
.+...++++.+. ..||.+|.+-- |-|.+.+...-...++++.. .-+...++.++. ..+.||.|-+-.
T Consensus 65 ~~~~~~~~~~~~-~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~ 143 (335)
T TIGR01036 65 FDKDGEAIDALG-AMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYKGPIGINIGK 143 (335)
T ss_pred cCCCHHHHHHHH-hcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeC
Confidence 344455566655 56999999853 33444433211112333322 123334444433 224566554421
Q ss_pred CC----CCChhHHHHHHHHHHHcCCcEEEE--ecccccCccCCCcC----HHHHHHHHHHcC-----CCceEE--EeCCC
Q 009196 321 GY----FEGKNRIDSLIADIGTWGASAVTV--HGRTRQQRYSKLAD----WDYIYQCARKAS-----DDLQVL--GNGDI 383 (540)
Q Consensus 321 G~----~e~~~~~~~la~~leeaGvdaItV--HgRtr~q~y~g~ad----w~~I~~i~~~~~-----~~IPVI--gNGdI 383 (540)
.- ....++..+.++.+.+ .+|+|.+ +.-... ......+ .+.++.+++.+. .++||+ ..-++
T Consensus 144 ~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~-~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~ 221 (335)
T TIGR01036 144 NKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTP-GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDL 221 (335)
T ss_pred CCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCC-CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCC
Confidence 10 1123455555555554 3999987 222111 1111112 344555655541 027887 44555
Q ss_pred C--CHHHHHHHHhcCCCcCeeeec
Q 009196 384 Y--SYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 384 ~--s~eDa~~~l~~~~gaDgVMIG 405 (540)
. +..++.+.+.+ .|||||.+.
T Consensus 222 ~~~~i~~ia~~~~~-~GadGi~l~ 244 (335)
T TIGR01036 222 TESDLEDIADSLVE-LGIDGVIAT 244 (335)
T ss_pred CHHHHHHHHHHHHH-hCCcEEEEE
Confidence 4 35666665665 899999764
No 477
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.16 E-value=15 Score=37.28 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=67.7
Q ss_pred CeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccc-cccEEEEecC
Q 009196 242 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRT 320 (540)
Q Consensus 242 ~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v-~iPVtVKiR~ 320 (540)
..+.+-|.|.+++++.+.++.+. ..|+|.||+-+-. +.. +.+.+.+.+++..+++.. ++|+.+=+|.
T Consensus 16 ~~i~v~l~~~~~~e~~~~~~~~~-~~~aD~vElRlD~---------l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~ 83 (253)
T PRK02412 16 PKIIVPIMGKTLEEVLAEALAIS-KYDADIIEWRADF---------LEK--ISDVESVLAAAPAIREKFAGKPLLFTFRT 83 (253)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHh-hcCCCEEEEEech---------hhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 35788999999999988888776 5689999996421 110 123466677777777765 6898888897
Q ss_pred CCC-----CChhHHHHHHHHHHHcC-CcEEEEe
Q 009196 321 GYF-----EGKNRIDSLIADIGTWG-ASAVTVH 347 (540)
Q Consensus 321 G~~-----e~~~~~~~la~~leeaG-vdaItVH 347 (540)
-++ .+.....++.+.+...| +++|.|-
T Consensus 84 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiE 116 (253)
T PRK02412 84 AKEGGEIALSDEEYLALIKAVIKSGLPDYIDVE 116 (253)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 442 23456677788888888 8999985
No 478
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=87.16 E-value=15 Score=37.37 Aligned_cols=131 Identities=18% Similarity=0.246 Sum_probs=69.9
Q ss_pred hCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEE
Q 009196 266 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 345 (540)
Q Consensus 266 ~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaIt 345 (540)
..|+|.||+- +-...-.|+ ..|..+.+|++.+.. ..|||.-+---..+ ...+..-+.....+|+++|-
T Consensus 18 ~~gaDiID~K------~P~~GaLGA---~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~-p~~~~~aa~~~a~~GvdyvK 85 (235)
T PF04476_consen 18 AGGADIIDLK------NPAEGALGA---LFPWVIREIVAAVPG--RKPVSATIGDLPMK-PGTASLAALGAAATGVDYVK 85 (235)
T ss_pred hCCCCEEEcc------CCCCCCCCC---CCHHHHHHHHHHcCC--CCceEEEecCCCCC-chHHHHHHHHHHhcCCCEEE
Confidence 4699999993 111111222 346666667666533 37999866422111 22233333445568999998
Q ss_pred EecccccCccCCCcCH----HHHHHHHHHc---CCCceEEEeC--CCC-----CHHHHHHHHhcCCCcCeeeecHHHHhC
Q 009196 346 VHGRTRQQRYSKLADW----DYIYQCARKA---SDDLQVLGNG--DIY-----SYLDWNKHKSDCPELASCMIARGALIK 411 (540)
Q Consensus 346 VHgRtr~q~y~g~adw----~~I~~i~~~~---~~~IPVIgNG--dI~-----s~eDa~~~l~~~~gaDgVMIGRgaL~n 411 (540)
|- .| +..++ +.+..+.+.+ ..+..||+.+ |-. ++.++.+...+ .|+++|||=.+.=..
T Consensus 86 vG------l~-g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~-aG~~gvMlDTa~Kdg 157 (235)
T PF04476_consen 86 VG------LF-GCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAE-AGFDGVMLDTADKDG 157 (235)
T ss_pred Ee------cC-CCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHH-cCCCEEEEecccCCC
Confidence 72 22 11222 2223332222 1245566665 332 46677777766 899999997654333
Q ss_pred CCchH
Q 009196 412 PWIFT 416 (540)
Q Consensus 412 Pwif~ 416 (540)
..+|.
T Consensus 158 ~~L~d 162 (235)
T PF04476_consen 158 GSLFD 162 (235)
T ss_pred Cchhh
Confidence 44443
No 479
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=87.03 E-value=2.9 Score=43.38 Aligned_cols=91 Identities=12% Similarity=0.000 Sum_probs=59.4
Q ss_pred HHHHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCce
Q 009196 298 RMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ 376 (540)
Q Consensus 298 ~l~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IP 376 (540)
-+.+.++.+++.. ..+|.|-++. .+=++.+.++|+|.|.+|+-+.++ --+.+..+++.-+ ++.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~t---------leea~ea~~~GaDiI~lDn~~~e~------l~~~v~~l~~~~~-~~~ 237 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEADT---------IEQALTVLQASPDILQLDKFTPQQ------LHHLHERLKFFDH-IPT 237 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCC---------HHHHHHHHHcCcCEEEECCCCHHH------HHHHHHHHhccCC-CEE
Confidence 3556777777654 4566665542 233455668999999999543211 1123333332223 688
Q ss_pred EEEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 377 VLGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 377 VIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
|.++||| +++.+.++.. +|+|.+.+|--
T Consensus 238 leasGGI-~~~ni~~ya~--~GvD~is~gal 265 (277)
T TIGR01334 238 LAAAGGI-NPENIADYIE--AGIDLFITSAP 265 (277)
T ss_pred EEEECCC-CHHHHHHHHh--cCCCEEEeCcc
Confidence 9999999 8999988665 89999999853
No 480
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=86.87 E-value=13 Score=42.76 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=55.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHH
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~ 330 (540)
.+++.+.+.|+.+. ++|+|.|-| .|-.|. -.|..+.++++++++.+++||.+=. .++.-.+.
T Consensus 151 ~t~e~~~~~ak~l~-~~Gad~I~I----------kDtaG~---l~P~~v~~lv~alk~~~~ipi~~H~----Hnt~Gla~ 212 (596)
T PRK14042 151 HTLDNFLELGKKLA-EMGCDSIAI----------KDMAGL---LTPTVTVELYAGLKQATGLPVHLHS----HSTSGLAS 212 (596)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEe----------CCcccC---CCHHHHHHHHHHHHhhcCCEEEEEe----CCCCCcHH
Confidence 46899999999887 689998877 355553 4799999999999998887776622 22222222
Q ss_pred HHHHHHHHcCCcEEEE
Q 009196 331 SLIADIGTWGASAVTV 346 (540)
Q Consensus 331 ~la~~leeaGvdaItV 346 (540)
.-.-.+.++||+.|..
T Consensus 213 an~laAieaGad~iD~ 228 (596)
T PRK14042 213 ICHYEAVLAGCNHIDT 228 (596)
T ss_pred HHHHHHHHhCCCEEEe
Confidence 2233356899999965
No 481
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=86.75 E-value=5.6 Score=40.92 Aligned_cols=123 Identities=18% Similarity=0.168 Sum_probs=72.3
Q ss_pred CCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccccc-ccEEEEec
Q 009196 241 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD-KPITIKVR 319 (540)
Q Consensus 241 e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~-iPVtVKiR 319 (540)
+.|+ +.|..-+. -.|.++. ++|+|.|=+ |=...++. .|+.+.+--..+.+...+++|++... .-|.+-+-
T Consensus 15 g~ki-~~lTaYD~----~~A~~~d-~agvD~iLV--GDSlgmv~-~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmP 85 (261)
T PF02548_consen 15 GEKI-VMLTAYDY----PSARIAD-EAGVDIILV--GDSLGMVV-LGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMP 85 (261)
T ss_dssp T--E-EEEE--SH----HHHHHHH-HTT-SEEEE---TTHHHHT-T--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--
T ss_pred CCcE-EEEecccH----HHHHHHH-HcCCCEEEe--CCcHHHhe-eCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCC
Confidence 3343 45655553 3455555 789999877 43333332 46667676778888888999988774 44666677
Q ss_pred CCCC-CChhHHHHHHHHHHH-cCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCC
Q 009196 320 TGYF-EGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDI 383 (540)
Q Consensus 320 ~G~~-e~~~~~~~la~~lee-aGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI 383 (540)
.|.. .+.+.+++-|.+|-. +|+|+|-+-|.. ...+.|+.+.+. .|||+|-=|+
T Consensus 86 f~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~--------~~~~~i~~l~~~---GIPV~gHiGL 140 (261)
T PF02548_consen 86 FGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA--------EIAETIKALVDA---GIPVMGHIGL 140 (261)
T ss_dssp TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG--------GGHHHHHHHHHT---T--EEEEEES
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEeccch--------hHHHHHHHHHHC---CCcEEEEecC
Confidence 6665 566778888877755 999999997642 234667777764 6999997665
No 482
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.72 E-value=7.8 Score=40.32 Aligned_cols=86 Identities=8% Similarity=0.079 Sum_probs=56.2
Q ss_pred HHHHHHhccccc--ccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceE
Q 009196 300 KGIIEATSGTVD--KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV 377 (540)
Q Consensus 300 ~eIv~av~~~v~--iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPV 377 (540)
.+.++.+++... .+|.|-++. .+=+..+.++|+|.|-+-.-+ .+-++++.+.++....+
T Consensus 180 ~~av~~~r~~~~~~~kIeVEv~s---------lee~~ea~~~gaDiImLDn~s----------~e~l~~av~~~~~~~~l 240 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEVEVDR---------LDQIEPVLAAGVDTIMLDNFS----------LDDLREGVELVDGRAIV 240 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCC---------HHHHHHHHhcCCCEEEECCCC----------HHHHHHHHHHhCCCeEE
Confidence 345555555443 456664442 222344457999999885432 24455555554446789
Q ss_pred EEeCCCCCHHHHHHHHhcCCCcCeeeecHH
Q 009196 378 LGNGDIYSYLDWNKHKSDCPELASCMIARG 407 (540)
Q Consensus 378 IgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 407 (540)
.++|+| +.+.+.++.. +|+|.+.+|.-
T Consensus 241 eaSGgI-~~~ni~~yA~--tGVD~Is~gal 267 (281)
T PRK06543 241 EASGNV-NLNTVGAIAS--TGVDVISVGAL 267 (281)
T ss_pred EEECCC-CHHHHHHHHh--cCCCEEEeCcc
Confidence 999999 8888888665 89999999963
No 483
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=86.68 E-value=12 Score=37.48 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCCh---hH
Q 009196 252 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGK---NR 328 (540)
Q Consensus 252 ~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~---~~ 328 (540)
+++-+...|..+. +.|+-+|-+|. .+=+++++..+++|+.==+.-.+.+.. .-
T Consensus 31 ~~~iv~~mA~Aa~-~gGAvgiR~~g-----------------------v~dIkai~~~v~vPIIGIiKrd~~~s~v~ITp 86 (229)
T COG3010 31 SPEIVAAMALAAE-QGGAVGIRIEG-----------------------VEDIKAIRAVVDVPIIGIIKRDYPDSPVRITP 86 (229)
T ss_pred chhHHHHHHHHHH-hCCcceEeecc-----------------------hhhHHHHHhhCCCCeEEEEecCCCCCCceecc
Confidence 3455666666555 78999999881 133677888899998633333333211 12
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCee
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC 402 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgV 402 (540)
+.+=++.|.++|++-|.+.+-.| +|+.+ .--+.+.+++ .+ -.++--|+.|+++...+.. .|+|.|
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R-~RP~~-~~~~~i~~~k--~~---~~l~MAD~St~ee~l~a~~--~G~D~I 151 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDR-PRPDG-DLEELIARIK--YP---GQLAMADCSTFEEGLNAHK--LGFDII 151 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccC-CCCcc-hHHHHHHHhh--cC---CcEEEeccCCHHHHHHHHH--cCCcEE
Confidence 34556778899999999887544 45554 2223444422 22 3566789999999998876 689976
No 484
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=86.59 E-value=10 Score=40.92 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=86.4
Q ss_pred CCCeEEEEe---cCCcHHHHHHHHHHHHHhCCCCEE-Ee-cCCCCCcccccCCccccccCCchHHHHHHHHhccccc--c
Q 009196 240 SEDLFGVQI---CGAYPDTLARTVELIDQQCTVDFI-DI-NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--K 312 (540)
Q Consensus 240 ~e~p~~vQL---~G~~p~~~a~AA~~~~~~aG~D~I-DI-N~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~--i 312 (540)
.++|+..-+ .|-+++.+++.+..+. ..|+|+| |- |.|.+.. +.+.+|-+.+.+.++.+.+.++ +
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~-~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFA-LGGIDIIKDDHGLADQPF--------APFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHH-hcCCCeeecCccccCccC--------CCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 356664332 2889999999999887 6899999 33 2332221 1122344455555555555453 4
Q ss_pred cEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCC-ceEEEe----CCC----
Q 009196 313 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDD-LQVLGN----GDI---- 383 (540)
Q Consensus 313 PVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~-IPVIgN----GdI---- 383 (540)
++.+=+. ....++.+.++.++++|++++-|..- ..-|+.+..+++.. . +||.+- |-+
T Consensus 195 ~y~~Nit----a~~~em~~ra~~a~~~Ga~~vMv~~~--------~~G~~~~~~l~~~~--~~l~i~aHra~~ga~~~~~ 260 (364)
T cd08210 195 LYAPNVT----GPPTQLLERARFAKEAGAGGVLIAPG--------LTGLDTFRELAEDF--DFLPILAHPAFAGAFVSSG 260 (364)
T ss_pred eEEEecC----CCHHHHHHHHHHHHHcCCCEEEeecc--------cchHHHHHHHHhcC--CCcEEEEccccccccccCC
Confidence 6666443 23568889999999999999988532 12356677777765 5 788765 222
Q ss_pred --CCHHH-HHHHHhcCCCcCeeeec
Q 009196 384 --YSYLD-WNKHKSDCPELASCMIA 405 (540)
Q Consensus 384 --~s~eD-a~~~l~~~~gaDgVMIG 405 (540)
.|..- +.++. +..|+|.++++
T Consensus 261 ~~is~~~~~~kl~-RlaGad~~~~~ 284 (364)
T cd08210 261 DGISHALLFGTLF-RLAGADAVIFP 284 (364)
T ss_pred CcccHHHHHHHHH-HHhCCCEEEeC
Confidence 23322 33433 34899987653
No 485
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=86.56 E-value=14 Score=39.59 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCcEEEEecccccCccCC---C----cCHHHHHHHHHHcCCCceEEEeCCCCCHHH
Q 009196 329 IDSLIADIGTWGASAVTVHGRTRQQRYSK---L----ADWDYIYQCARKASDDLQVLGNGDIYSYLD 388 (540)
Q Consensus 329 ~~~la~~leeaGvdaItVHgRtr~q~y~g---~----adw~~I~~i~~~~~~~IPVIgNGdI~s~eD 388 (540)
..+....+++.|+|+|.|.-.|..+.|.+ | .+|+.+++|++.++ ++|++.-|+=-.+.+
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~ 240 (347)
T PRK13399 175 PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQE 240 (347)
T ss_pred HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHH
Confidence 44445556778999997766666666654 2 58999999999984 599999998776643
No 486
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=86.42 E-value=3 Score=42.40 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCCChhHHH
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 330 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~ 330 (540)
.+++...+-|+... +.|+|.||||++...+.... -......+++..+|+.+++.+++||+|-..- .
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~----~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~---------~ 86 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEP----VSVEEELERVIPVLRALAGEPDVPISVDTFN---------A 86 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCc----CCHHHHHHHHHHHHHHHHhcCCCeEEEeCCc---------H
Confidence 35677776676665 57999999998765432100 0011234678889999988778999884431 2
Q ss_pred HHHHHHHHcCCcEE
Q 009196 331 SLIADIGTWGASAV 344 (540)
Q Consensus 331 ~la~~leeaGvdaI 344 (540)
+.++...+.|++.|
T Consensus 87 ~v~~aaL~~g~~iI 100 (258)
T cd00423 87 EVAEAALKAGADII 100 (258)
T ss_pred HHHHHHHHhCCCEE
Confidence 44555556676655
No 487
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=86.41 E-value=30 Score=35.40 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=81.1
Q ss_pred EecC--CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCC
Q 009196 247 QICG--AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE 324 (540)
Q Consensus 247 QL~G--~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e 324 (540)
|+.| -+.++..+.|+.+. ++|+|.||+ |.|.... ....|+....+.+.+.++++..+. +.++.+-.|.+..+
T Consensus 11 q~~~~~f~~~~~~~ia~~L~-~~GVd~IEv--G~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~ 84 (266)
T cd07944 11 YVNNWDFGDEFVKAIYRALA-AAGIDYVEI--GYRSSPE-KEFKGKSAFCDDEFLRRLLGDSKG--NTKIAVMVDYGNDD 84 (266)
T ss_pred cccCccCCHHHHHHHHHHHH-HCCCCEEEe--ecCCCCc-cccCCCccCCCHHHHHHHHhhhcc--CCEEEEEECCCCCC
Confidence 4444 35788889999887 799999999 4444322 346677777777777777765431 35666666765311
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHH----HHHHHHcCCCceEEEe----CCCCCHHHHHHHH---
Q 009196 325 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI----YQCARKASDDLQVLGN----GDIYSYLDWNKHK--- 393 (540)
Q Consensus 325 ~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I----~~i~~~~~~~IPVIgN----GdI~s~eDa~~~l--- 393 (540)
.+.+..+.++|++.|.+.-.. .+++.+ +.+++. .+.|.++ .+ .+++.+.+++
T Consensus 85 -----~~~l~~a~~~gv~~iri~~~~--------~~~~~~~~~i~~ak~~---G~~v~~~~~~a~~-~~~~~~~~~~~~~ 147 (266)
T cd07944 85 -----IDLLEPASGSVVDMIRVAFHK--------HEFDEALPLIKAIKEK---GYEVFFNLMAISG-YSDEELLELLELV 147 (266)
T ss_pred -----HHHHHHHhcCCcCEEEEeccc--------ccHHHHHHHHHHHHHC---CCeEEEEEEeecC-CCHHHHHHHHHHH
Confidence 234566788999998875322 233333 333332 2444433 22 4566655544
Q ss_pred hcCCCcCeeeec
Q 009196 394 SDCPELASCMIA 405 (540)
Q Consensus 394 ~~~~gaDgVMIG 405 (540)
.+ .|+|.|.++
T Consensus 148 ~~-~g~~~i~l~ 158 (266)
T cd07944 148 NE-IKPDVFYIV 158 (266)
T ss_pred Hh-CCCCEEEEe
Confidence 33 578887665
No 488
>PRK15108 biotin synthase; Provisional
Probab=86.29 E-value=4.3 Score=43.18 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 326 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 326 ~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
.+++.+.|+.+.+.|+..|++.+-.... ....++++.++.+.+. ..+.++.+=+..+.+.+.++.+ .|+|.+-+
T Consensus 78 ~eEI~~~a~~~~~~G~~~i~i~~~g~~p---~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~Lke--AGld~~n~ 152 (345)
T PRK15108 78 VEQVLESARKAKAAGSTRFCMGAAWKNP---HERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLAN--AGLDYYNH 152 (345)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCCC---CcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHH--cCCCEEee
Confidence 4678889999999999999774321111 1123455544433221 1466665555667888777544 89999877
Q ss_pred cHHHHhCCCchHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH
Q 009196 405 ARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWL 464 (540)
Q Consensus 405 GRgaL~nPwif~eik~~~~~~~s~~erl~il~~~~~~~le~~g~d~~gv~~~R~~l~e~l 464 (540)
.=-. .|..|.+|.. .-+..+|++.++.-.+.++.-.-.--.|+..+...+.+.+
T Consensus 153 ~leT--~p~~f~~I~~----~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~ 206 (345)
T PRK15108 153 NLDT--SPEFYGNIIT----TRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLL 206 (345)
T ss_pred cccc--ChHhcCCCCC----CCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHH
Confidence 5444 6888887753 2267899999998877666322111345555555444433
No 489
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=86.18 E-value=22 Score=35.20 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=78.2
Q ss_pred EEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecC--C-C
Q 009196 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT--G-Y 322 (540)
Q Consensus 246 vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~--G-~ 322 (540)
+.+|..+++....|+ +.|+|-|||+.+ .. .|+ | .|.. .+++.+++.+++||-|=||+ | |
T Consensus 3 lEvcv~s~~~a~~A~-----~~GAdRiELc~~-----l~---~GG-l--TPS~--g~i~~~~~~~~ipv~vMIRpr~gdF 64 (201)
T PF03932_consen 3 LEVCVESLEDALAAE-----AGGADRIELCSN-----LE---VGG-L--TPSL--GLIRQAREAVDIPVHVMIRPRGGDF 64 (201)
T ss_dssp EEEEESSHHHHHHHH-----HTT-SEEEEEBT-----GG---GT--B-----H--HHHHHHHHHTTSEEEEE--SSSS-S
T ss_pred EEEEeCCHHHHHHHH-----HcCCCEEEECCC-----cc---CCC-c--CcCH--HHHHHHHhhcCCceEEEECCCCCCc
Confidence 455666666554443 579999999741 11 121 1 2332 34555555778999988887 2 2
Q ss_pred CCCh---hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCC---CCCHHHHHHHHhcC
Q 009196 323 FEGK---NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD---IYSYLDWNKHKSDC 396 (540)
Q Consensus 323 ~e~~---~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGd---I~s~eDa~~~l~~~ 396 (540)
.-+. ....+-++.+.++|++.+.+-.=+. .+..|.+.++++.+... ++|+...=- +.++..+.+.|.+
T Consensus 65 ~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~----dg~iD~~~~~~Li~~a~-~~~~tFHRAfD~~~d~~~al~~L~~- 138 (201)
T PF03932_consen 65 VYSDEEIEIMKEDIRMLRELGADGFVFGALTE----DGEIDEEALEELIEAAG-GMPVTFHRAFDEVPDPEEALEQLIE- 138 (201)
T ss_dssp ---HHHHHHHHHHHHHHHHTT-SEEEE--BET----TSSB-HHHHHHHHHHHT-TSEEEE-GGGGGSSTHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCeeEEEeECC----CCCcCHHHHHHHHHhcC-CCeEEEeCcHHHhCCHHHHHHHHHh-
Confidence 2222 2445556677899999998855443 34578889999988876 788887653 3456666666665
Q ss_pred CCcCeeeec
Q 009196 397 PELASCMIA 405 (540)
Q Consensus 397 ~gaDgVMIG 405 (540)
.|++.|.-.
T Consensus 139 lG~~rVLTS 147 (201)
T PF03932_consen 139 LGFDRVLTS 147 (201)
T ss_dssp HT-SEEEES
T ss_pred cCCCEEECC
Confidence 588888655
No 490
>PRK15063 isocitrate lyase; Provisional
Probab=86.10 E-value=25 Score=38.66 Aligned_cols=155 Identities=10% Similarity=-0.006 Sum_probs=91.9
Q ss_pred CeEEEEe-c--CCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhccc---ccccEE
Q 009196 242 DLFGVQI-C--GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT---VDKPIT 315 (540)
Q Consensus 242 ~p~~vQL-~--G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~---v~iPVt 315 (540)
.|+++=+ . |+ +....+.++.+. ++|+.+|.|-=..+.++.+....|-.|....+.+.+ |++++.+ .+.|+.
T Consensus 147 ~PIiADaDtGfGg-~~nv~~~vk~~i-eAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~k-L~AAr~A~d~~g~~~v 223 (428)
T PRK15063 147 APIVADAEAGFGG-VLNAFELMKAMI-EAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRK-LVAARLAADVMGVPTL 223 (428)
T ss_pred CCeEEECCCCCCC-cHHHHHHHHHHH-HcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHH-HHHHHHHHHhcCCCeE
Confidence 5888776 2 34 444777888877 789999999655444444433334445444444444 4444433 366776
Q ss_pred EEecCCCC------------------------------CChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHH
Q 009196 316 IKVRTGYF------------------------------EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIY 365 (540)
Q Consensus 316 VKiR~G~~------------------------------e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~ 365 (540)
|=-|+.-. ...+.+++=+....+ |+|.|-++. +..+++.++
T Consensus 224 IiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et--------~~~d~ee~~ 294 (428)
T PRK15063 224 VIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCET--------STPDLEEAR 294 (428)
T ss_pred EEEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCC--------CCCCHHHHH
Confidence 66676331 123466666666777 999998863 346788888
Q ss_pred HHHHHcCCCce--EEEeCCCCC--------HHHHHH---HHhcCCCcCeeeecHHHH
Q 009196 366 QCARKASDDLQ--VLGNGDIYS--------YLDWNK---HKSDCPELASCMIARGAL 409 (540)
Q Consensus 366 ~i~~~~~~~IP--VIgNGdI~s--------~eDa~~---~l~~~~gaDgVMIGRgaL 409 (540)
++++.+...+| ++++|.--+ .+++.. -|.+ -|...+.+.-+.+
T Consensus 295 ~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~-~Gy~~~~~~la~~ 350 (428)
T PRK15063 295 RFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGA-MGYKFQFITLAGF 350 (428)
T ss_pred HHHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHHHH-cCceEEEechHHH
Confidence 88888743347 777773322 223222 2333 5666666654443
No 491
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=86.09 E-value=5.4 Score=43.20 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=37.7
Q ss_pred CCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeec
Q 009196 356 SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 405 (540)
Q Consensus 356 ~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 405 (540)
.+..+|+.|+.+++.. ++|||. .+|.|.+|+..+++ .|||+|.|+
T Consensus 229 ~~~ltW~di~~lr~~~--~~pviv-KgV~s~~dA~~a~~--~Gvd~I~Vs 273 (381)
T PRK11197 229 DPSISWKDLEWIRDFW--DGPMVI-KGILDPEDARDAVR--FGADGIVVS 273 (381)
T ss_pred CCCCCHHHHHHHHHhC--CCCEEE-EecCCHHHHHHHHh--CCCCEEEEC
Confidence 3456899999999998 689886 55789999999886 799999764
No 492
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=86.05 E-value=8.2 Score=40.47 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=56.9
Q ss_pred HHHHHHhcccc-cccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEE
Q 009196 300 KGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL 378 (540)
Q Consensus 300 ~eIv~av~~~v-~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVI 378 (540)
.+.++.++... ..++.|-++. .+=+..+.++|+|.|-+-.-+ .+.++++.+....++.+.
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~s---------leea~ea~~~gaDiI~LDn~s----------~e~~~~av~~~~~~~~ie 256 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVEN---------LDELDQALKAGADIIMLDNFT----------TEQMREAVKRTNGRALLE 256 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeCC---------HHHHHHHHHcCCCEEEeCCCC----------hHHHHHHHHhhcCCeEEE
Confidence 34555555443 4567775553 222444567999999885332 244555555544478999
Q ss_pred EeCCCCCHHHHHHHHhcCCCcCeeeecH
Q 009196 379 GNGDIYSYLDWNKHKSDCPELASCMIAR 406 (540)
Q Consensus 379 gNGdI~s~eDa~~~l~~~~gaDgVMIGR 406 (540)
++|+| +.+.+.++-. +|+|.+.+|.
T Consensus 257 aSGGI-~~~ni~~yA~--tGVD~Is~ga 281 (296)
T PRK09016 257 VSGNV-TLETLREFAE--TGVDFISVGA 281 (296)
T ss_pred EECCC-CHHHHHHHHh--cCCCEEEeCc
Confidence 99999 7888888654 8999999995
No 493
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=86.05 E-value=24 Score=38.84 Aligned_cols=193 Identities=14% Similarity=0.061 Sum_probs=107.6
Q ss_pred cCCCCCCHHHHHHHHHh---CCCEEEeccceechhccCChhhhh----hhhcccC--C--CeEEEEecCCcHHHHHHHHH
Q 009196 193 PLTTVGNLPFRRVCKVL---GADVTCGEMAMCTNLLQGQASEWA----LLRRHSS--E--DLFGVQICGAYPDTLARTVE 261 (540)
Q Consensus 193 PM~~vtdlpfR~l~~~~---Gadl~~TEmi~a~~l~~g~~~e~~----ll~~~~~--e--~p~~vQL~G~~p~~~a~AA~ 261 (540)
|-.+.+-..|.++|.++ |.|++----..+++-..-...... .++++.. + ....+.|.+ ++++|.+-|+
T Consensus 169 PklGLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~em~~ra~ 247 (424)
T cd08208 169 PNIGLPPGEFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-EVDRLMELHD 247 (424)
T ss_pred ccccCCHHHHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHH
Confidence 76788888899888764 788764222222211111111111 1222222 2 346789988 6999999999
Q ss_pred HHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCCCCC-----C-hhHHHHHHHH
Q 009196 262 LIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE-----G-KNRIDSLIAD 335 (540)
Q Consensus 262 ~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G~~e-----~-~~~~~~la~~ 335 (540)
.+. ++|...+=+|. ...|+. .++++++..++||-+ .|.++-- + --...-+++.
T Consensus 248 ~a~-~~G~~~vmv~~-------~~~G~~------------al~~L~~~~~l~iha-Hra~~ga~~r~~~~Gis~~vl~Kl 306 (424)
T cd08208 248 VAV-RNGANALLINA-------MPVGLS------------AVRMLRKHAQVPLIA-HFPFIASFSRLEKYGIHSRVMTKL 306 (424)
T ss_pred HHH-HhCCCEEEEee-------ecccHH------------HHHHHHhcCCCeEEe-ccCccccccCCCCCCCcHHHHHHH
Confidence 887 67888776662 223332 244444444556543 2322110 0 0122337888
Q ss_pred HHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHc-------CCCceEEEeCCCCCHHHHHHHHhcCCC-cCee-eecH
Q 009196 336 IGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKA-------SDDLQVLGNGDIYSYLDWNKHKSDCPE-LASC-MIAR 406 (540)
Q Consensus 336 leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~-------~~~IPVIgNGdI~s~eDa~~~l~~~~g-aDgV-MIGR 406 (540)
+.=+|+|.+++.+- ..++.-. -+.+.++...+ +.-+||. +||+ ++..+-.+++. .| .|.| ++|-
T Consensus 307 ~RLaGaD~ih~~~~--gg~~~~~--~~~~~~~~~~~~~~~~~~k~~~Pv~-SGG~-~~~~~p~~~~~-~G~~Dvil~~GG 379 (424)
T cd08208 307 QRLAGLDVVIMPGF--GPRMMTP--EEEVLECVIACLEPMGPIKPCLPVP-GGSD-SALTLQTVYEK-VGNVDFGFVPGR 379 (424)
T ss_pred HHHcCCCeeeccCC--CCCccch--HHHHHHHHHHHhCcccCCCCceEec-ccCC-CHhHHHHHHHH-hCCCCEEEecCc
Confidence 88899999987431 1122111 12222222221 1135665 6777 67777777776 67 6877 7899
Q ss_pred HHHhCCCc
Q 009196 407 GALIKPWI 414 (540)
Q Consensus 407 gaL~nPwi 414 (540)
|++..||=
T Consensus 380 Gi~gHP~G 387 (424)
T cd08208 380 GVFGHPMG 387 (424)
T ss_pred cccCCCCC
Confidence 99999983
No 494
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=86.04 E-value=6.2 Score=40.25 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEe
Q 009196 251 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 318 (540)
Q Consensus 251 ~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKi 318 (540)
.+++...+-|.... +.|+|.||||++ |. .....+.+.+++..+++.+++||+|-.
T Consensus 23 ~~~d~~~~~A~~~~-~~GAdiIDIG~~-~~-----------~~~~~ee~~r~v~~i~~~~~~piSIDT 77 (252)
T cd00740 23 EDYDEALDVARQQV-EGGAQILDLNVD-YG-----------GLDGVSAMKWLLNLLATEPTVPLMLDS 77 (252)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCC-CC-----------CCCHHHHHHHHHHHHHHhcCCcEEeeC
Confidence 55666666666665 569999999975 21 112345666776767766789998844
No 495
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.82 E-value=8.9 Score=40.18 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=48.3
Q ss_pred HHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCC
Q 009196 333 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 412 (540)
Q Consensus 333 a~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 412 (540)
+..+.++|+|.|-+-.-+ .+.++++.+.++.++.+.++|+| +.+.+.++-. +|+|.+.+|.--..=|
T Consensus 218 a~eA~~aGaDiImLDnms----------pe~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~--tGVD~IS~galthsa~ 284 (294)
T PRK06978 218 LETALAHGAQSVLLDNFT----------LDMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAE--TGVDRISIGALTKDVR 284 (294)
T ss_pred HHHHHHcCCCEEEECCCC----------HHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHh--cCCCEEEeCccccCCc
Confidence 444567999999985433 24455555554446889999999 8888888665 8999999996443334
Q ss_pred C
Q 009196 413 W 413 (540)
Q Consensus 413 w 413 (540)
|
T Consensus 285 ~ 285 (294)
T PRK06978 285 A 285 (294)
T ss_pred c
Confidence 3
No 496
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=85.63 E-value=1.2 Score=45.12 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=36.0
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHH
Q 009196 374 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 418 (540)
Q Consensus 374 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~ei 418 (540)
.++|+.-|.|.. +++.+++.. ..+||+.||++.| +|.-|.+|
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~-~~vDG~LVG~Asl-~~~~f~~I 240 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQ-PDIDGVLVGGASL-KAESFLDI 240 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcC-CCCCEEEeehHhh-CHHHHHHH
Confidence 589999999966 999998875 7799999999998 67777665
No 497
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=85.55 E-value=25 Score=36.06 Aligned_cols=136 Identities=17% Similarity=0.172 Sum_probs=83.6
Q ss_pred EEecCCcHHHHHHHHHHHHHhCCCCEEEecCCCCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEecCC---C
Q 009196 246 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG---Y 322 (540)
Q Consensus 246 vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~GCP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR~G---~ 322 (540)
+-+|..+++....| . ++|+|-|||+.+=.. |+ | .|.. .+++.+++.+++||.|=||+- +
T Consensus 4 lEvcv~s~~~a~~A----~-~~GAdRiELc~~L~~--------GG-l--TPS~--g~i~~~~~~~~ipv~vMIRPR~gdF 65 (248)
T PRK11572 4 LEICCYSMECALTA----Q-QAGADRIELCAAPKE--------GG-L--TPSL--GVLKSVRERVTIPVHPIIRPRGGDF 65 (248)
T ss_pred EEEEECCHHHHHHH----H-HcCCCEEEEccCcCC--------CC-c--CCCH--HHHHHHHHhcCCCeEEEEecCCCCC
Confidence 44555665554333 3 579999999743111 11 1 2322 234444555689999888873 2
Q ss_pred CCCh---hHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCCceEEEeCCC---CCHHHHHHHHhcC
Q 009196 323 FEGK---NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDI---YSYLDWNKHKSDC 396 (540)
Q Consensus 323 ~e~~---~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~IPVIgNGdI---~s~eDa~~~l~~~ 396 (540)
.-+. +...+-++.+.+.|++.|.+-.=+. .+..|.+.++++.+... ++|+...=-+ .++..+.+.|.+
T Consensus 66 ~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~----dg~vD~~~~~~Li~~a~-~~~vTFHRAfD~~~d~~~al~~l~~- 139 (248)
T PRK11572 66 CYSDGEFAAMLEDIATVRELGFPGLVTGVLDV----DGHVDMPRMRKIMAAAG-PLAVTFHRAFDMCANPLNALKQLAD- 139 (248)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEeeECC----CCCcCHHHHHHHHHHhc-CCceEEechhhccCCHHHHHHHHHH-
Confidence 2222 2344556677899999998754443 34578888998888775 6888765433 356666665665
Q ss_pred CCcCeeeec
Q 009196 397 PELASCMIA 405 (540)
Q Consensus 397 ~gaDgVMIG 405 (540)
.|++.|.-.
T Consensus 140 lG~~rILTS 148 (248)
T PRK11572 140 LGVARILTS 148 (248)
T ss_pred cCCCEEECC
Confidence 578877644
No 498
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=85.46 E-value=10 Score=38.56 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=50.2
Q ss_pred CCeEEEEecCCcHHHHHHHHHHHHHhCCCCEEEecCC-CCCcccccCCccccccCCchHHHHHHHHhcccccccEEEEec
Q 009196 241 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 319 (540)
Q Consensus 241 e~p~~vQL~G~~p~~~a~AA~~~~~~aG~D~IDIN~G-CP~~~v~~~G~GsaLl~~p~~l~eIv~av~~~v~iPVtVKiR 319 (540)
+..+++-+.-.+|. +++.+. .+|||+|=|-+= .|+ +.+-+..++.++.. .+.+..| |
T Consensus 11 ~~~~G~~~~~~sp~----~~e~~a-~~G~D~v~iD~EHg~~--------------~~~~~~~~~~a~~~-~g~~~~V--R 68 (249)
T TIGR03239 11 ETLIGCWSALGNPI----TTEVLG-LAGFDWLLLDGEHAPN--------------DVLTFIPQLMALKG-SASAPVV--R 68 (249)
T ss_pred CceEEEEEcCCCcH----HHHHHH-hcCCCEEEEecccCCC--------------CHHHHHHHHHHHhh-cCCCcEE--E
Confidence 34566655555553 444554 579999888642 122 45667788887754 3666777 5
Q ss_pred CCCCCChhHHHHHHHHHHHcCCcEEEE
Q 009196 320 TGYFEGKNRIDSLIADIGTWGASAVTV 346 (540)
Q Consensus 320 ~G~~e~~~~~~~la~~leeaGvdaItV 346 (540)
+.+.+ ...++++.+.|++.|.+
T Consensus 69 vp~~~-----~~~i~r~LD~Ga~gIiv 90 (249)
T TIGR03239 69 PPWNE-----PVIIKRLLDIGFYNFLI 90 (249)
T ss_pred CCCCC-----HHHHHHHhcCCCCEEEe
Confidence 43322 35667888999999977
No 499
>PRK14565 triosephosphate isomerase; Provisional
Probab=85.40 E-value=1.5 Score=44.51 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=42.2
Q ss_pred CcCHHHHHH----HHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCeeeecHHHHhCCCchHHHH
Q 009196 358 LADWDYIYQ----CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 419 (540)
Q Consensus 358 ~adw~~I~~----i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwif~eik 419 (540)
.|.-+++.+ |++... +++|+.-|.| +++.+.+++.. .++||+.|||+.| +|.-|.+|-
T Consensus 170 ~a~~e~i~~~~~~Ir~~~~-~~~IlYGGSV-~~~N~~~l~~~-~~iDG~LvG~asl-~~~~f~~ii 231 (237)
T PRK14565 170 IPSNDAIAEAFEIIRSYDS-KSHIIYGGSV-NQENIRDLKSI-NQLSGVLVGSASL-DVDSFCKII 231 (237)
T ss_pred CCCHHHHHHHHHHHHHhCC-CceEEEcCcc-CHhhHHHHhcC-CCCCEEEEechhh-cHHHHHHHH
Confidence 344444443 444333 6899999999 67777777764 8999999999998 777777764
No 500
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=85.36 E-value=6.4 Score=41.27 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=67.3
Q ss_pred CchHHHHHHHHhcccccccEEEEecCCCCCChhHHHHHHHHHHHcCCcEEEEecccccCccCCCcCHHHHHHHHHHcCCC
Q 009196 295 KPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDD 374 (540)
Q Consensus 295 ~p~~l~eIv~av~~~v~iPVtVKiR~G~~e~~~~~~~la~~leeaGvdaItVHgRtr~q~y~g~adw~~I~~i~~~~~~~ 374 (540)
.++.+.+-++.+++.++.|+.|-+..- . ....+.++.+.+.|++.|.+++.. + .+++.++++. .
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~-~---~~~~~~~~~~~~~~v~~v~~~~g~--------p-~~~i~~lk~~---g 109 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLL-S---PFVDELVDLVIEEKVPVVTTGAGN--------P-GKYIPRLKEN---G 109 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecC-C---CCHHHHHHHHHhCCCCEEEEcCCC--------c-HHHHHHHHHc---C
Confidence 578888999999988888988876542 1 224566777788999999886421 1 3578888874 4
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCCCcCeeee
Q 009196 375 LQVLGNGDIYSYLDWNKHKSDCPELASCMI 404 (540)
Q Consensus 375 IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 404 (540)
+.|+. +|.+.+.+.++.+ .|+|+|.+
T Consensus 110 ~~v~~--~v~s~~~a~~a~~--~GaD~Ivv 135 (307)
T TIGR03151 110 VKVIP--VVASVALAKRMEK--AGADAVIA 135 (307)
T ss_pred CEEEE--EcCCHHHHHHHHH--cCCCEEEE
Confidence 78874 8899999988665 79999986
Done!