RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 009196
         (540 letters)



>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
           function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
           c.1.4.1
          Length = 318

 Score =  215 bits (550), Expect = 9e-66
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 37/290 (12%)

Query: 183 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 242
           +    K+ LAP+    +  FR +    GAD    EM      L        LL     E 
Sbjct: 1   MSLEVKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLP-QPHER 59

Query: 243 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 302
              VQI G+ P+ L+    ++ ++    +ID+N GCP+  VV +GAG  LL      + I
Sbjct: 60  NVAVQIFGSEPNELSEAARILSEKY--KWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYI 117

Query: 303 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG-TWGASAVTVHGRTRQQRYSKLADW 361
           +     +V    ++K R G +E     +  I  I    G   V +H RT  Q ++  A+W
Sbjct: 118 VRELRKSVSGKFSVKTRLG-WEKNEVEE--IYRILVEEGVDEVFIHTRTVVQSFTGRAEW 174

Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS-------C---MIARGALIK 411
             +          +    +GDI++           PE A        C   ++ARGA+ +
Sbjct: 175 KAL----SVLEKRIPTFVSGDIFT-----------PEDAKRALEESGCDGLLVARGAIGR 219

Query: 412 PWIFTEIKE----QRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTR 457
           PWIF +IK+     ++ + +  E L   +      ++  G ++K V   R
Sbjct: 220 PWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKG-ERKAVVEMR 268


>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
           1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
          Length = 350

 Score = 68.8 bits (169), Expect = 9e-13
 Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 16/253 (6%)

Query: 217 EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINM 276
           EM +   +L+G      LL     E    +Q+ G+ P +LA    +  +    D I++N+
Sbjct: 35  EMTVDQAVLRGNRER--LLAFRPEEHPIALQLAGSDPKSLAEAARIG-EAFGYDEINLNL 91

Query: 277 GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY--FEGKNRIDSLIA 334
           GCP +     G G+CLL    R++ I++A    V  P+T+K+R G    E    +   + 
Sbjct: 92  GCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVE 151

Query: 335 DIGTWGASAVTVHGR-------TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL 387
            +   G     VH R       T+  R       D++++        L  + NG I S  
Sbjct: 152 AMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP-QLTFVTNGGIRSLE 210

Query: 388 DWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWG 447
           +   H          M+ R     P++  E   +         RL + +    +  E   
Sbjct: 211 EALFHLKRV---DGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVL 267

Query: 448 SDKKGVETTRHFL 460
                    RH L
Sbjct: 268 KGTPPWAVLRHML 280


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 61.4 bits (148), Expect = 5e-10
 Identities = 86/591 (14%), Positives = 167/591 (28%), Gaps = 191/591 (32%)

Query: 20  STNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGV 79
           S  T     + + L  D Q      K    +       L        +  ++E +  + V
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQ-PYLKL--------RQALLELRPAKNV 153

Query: 80  VDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENV-----ENCC 134
           +        +G   + G+G +    +          +     ++      +     +NC 
Sbjct: 154 L-------IDG---VLGSGKTWVALD----------VCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 135 SVEGDNGVSVLEE-DTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLID-FREKLY-- 190
           S E     +VLE         D    ++ D     ++  L+ HS + +L    + K Y  
Sbjct: 194 SPE-----TVLEMLQKLLYQIDPNWTSRSD---HSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 191 -LAPLTTVGNL----PFRRVCKVLGADVTCGEMAMCTNLLQGQASEWAL------LRRHS 239
            L  L  V N      F   CK+L   +T     +   L     +  +L      L    
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 240 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRM 299
            + L   +     P  L R      +  T +                         P R+
Sbjct: 303 VKSLLL-KYLDCRPQDLPR------EVLTTN-------------------------PRRL 330

Query: 300 KGIIEATSGTVDKPITIKVRTGYFE--GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSK 357
             I E+     D   T       ++    +++ ++I       +S   +     ++ + +
Sbjct: 331 SIIAESIR---DGLATWD----NWKHVNCDKLTTIIE------SSLNVLEPAEYRKMFDR 377

Query: 358 LADWDYIYQCARKASDD----LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 413
           L+    ++               +L    +     W         +    + + +L++  
Sbjct: 378 LS----VFP------PSAHIPTILLS---LI----WFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 414 ----------IFTEIKEQR------HWDITSGERLNIMKDFARFGL----------EHWG 447
                     I+ E+K +       H  I   +  NI K F    L           H G
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 448 -------SDKKGVETTRHFL-LEWLSYTCRY------IPVGLLDVIPQRLNWRP------ 487
                    ++       FL   +L    R+          +L+ + Q   ++P      
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 488 PAYSGR-DDL-------ETLMASDSAADWIRISEMLLGKVPDGFTFAPKHK 530
           P Y    + +       E  +      D +RI+ M      D   F   HK
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALM----AEDEAIFEEAHK 585


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 54.7 bits (131), Expect = 6e-08
 Identities = 83/490 (16%), Positives = 142/490 (28%), Gaps = 168/490 (34%)

Query: 143 SVLEEDTRNNTADTQPAAK----------IDDILPETDGSLKTHSREKKLIDFREKLYL- 191
            +L E T    AD +P             +  ++  +            L +F E  YL 
Sbjct: 39  KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLE 97

Query: 192 --------APLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED- 242
                   A L    +    +  +++   +      +       + S  AL R     + 
Sbjct: 98  GNDIHALAAKLLQENDTTLVKTKELIKNYI---TARIMAKRPFDKKSNSALFRAVGEGNA 154

Query: 243 ----LFGVQICGAYPDTLARTVELIDQQCT-----VDFIDINMGCPIDIVVNKGAGSCLL 293
               +FG Q  G   D      EL D   T      D I  +     +++        + 
Sbjct: 155 QLVAIFGGQ--GNTDDYFE---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209

Query: 294 TKPMRMKGIIEATSGTVDKP---------------------ITIKVRTGYFEGKNRIDSL 332
           T+ + +   +E  S T DK                      +T K+  G+  G+ R   L
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL-LGFTPGELR-SYL 267

Query: 333 IADIGTWGASAVTVHGRTRQQRYSKLA-----DWDYIYQCARKASDDLQVLGNGDIYSYL 387
                       T H    Q   + +A      W+  +   RKA   + VL       ++
Sbjct: 268 ---------KGATGHS---QGLVTAVAIAETDSWESFFVSVRKA---ITVL------FFI 306

Query: 388 DWNKHK------------SDCPE----LASCMIA-RGALIKPWIFTEIK-------EQRH 423
               ++             D  E    + S M++    L +  +   +          + 
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQ 365

Query: 424 WDIT----------SG-----ERLNIM--KDFARFGLEHW---GSDKKGVETTRHFLLEW 463
            +I+          SG       LN+   K  A  GL+      S++K   + R FL   
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-FL--- 421

Query: 464 LSYTCRYIPVG------LL---------DVIPQRLNWRP-----PAYSGRD--DLETLMA 501
                   PV       LL         D++   +++       P Y   D  DL  L  
Sbjct: 422 --------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473

Query: 502 S--DSAADWI 509
           S  +   D I
Sbjct: 474 SISERIVDCI 483



 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 45/316 (14%), Positives = 95/316 (30%), Gaps = 110/316 (34%)

Query: 24   LRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKS-LGLLGPAKSKMKVMEDKEQEGVVDS 82
            L K+S          + +W       +AD   K   G      S + ++ +      +  
Sbjct: 1635 LYKTS-------KAAQDVWN------RADNHFKDTYGF-----SILDIVINNPVNLTI-- 1674

Query: 83   NNSHATNGNGC------MKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSV 136
               H     G            +++ + +                + K  +E+  +    
Sbjct: 1675 ---HFGGEKGKRIRENYSAMIFETIVDGKLKT-----------EKIFKEINEHSTSYT-F 1719

Query: 137  EGDNGVSVLEEDTRNNTADTQPA------AKIDDILPETDGSLKT------HSREKKLID 184
              + G+  L     + T  TQPA      A  +D+  ++ G +        HS       
Sbjct: 1720 RSEKGL--L-----SATQFTQPALTLMEKAAFEDL--KSKGLIPADATFAGHS------- 1763

Query: 185  FREKL--YLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE 241
                L  Y A L ++ + +    + +V+                +G   + A+ R     
Sbjct: 1764 ----LGEYAA-LASLADVMSIESLVEVV--------------FYRGMTMQVAVPRDELGR 1804

Query: 242  DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN---KG-----AGS--- 290
              +G  +    P  +A +      Q  V+ +    G  ++I VN   +      AG    
Sbjct: 1805 SNYG--MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-VNYNVENQQYVAAGDLRA 1861

Query: 291  ----CLLTKPMRMKGI 302
                  +   ++++ I
Sbjct: 1862 LDTVTNVLNFIKLQKI 1877



 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 78/412 (18%), Positives = 124/412 (30%), Gaps = 151/412 (36%)

Query: 162 IDDILPETDGSLKTHSRE----KKL----IDFREKL----------YLA------PLTTV 197
           + D++  +  +L    R     +K+    ++  E L          YL       PL  V
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243

Query: 198 GNLP-FRRVCKVLGADVTCGEMAMCTNLLQG---------------QASEWALLRRHSS- 240
             L  +    K+LG   T GE+    + L+G               +   W         
Sbjct: 244 IQLAHYVVTAKLLG--FTPGELR---SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298

Query: 241 --EDLF--GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP 296
               LF  GV+   AYP+T   ++     +   D ++ N G P          S     P
Sbjct: 299 AITVLFFIGVRCYEAYPNT---SLPPSILE---DSLENNEGVP----------S-----P 337

Query: 297 M-RMKGI--------IEATSGTV--DKPITIKVRTGYFEGKNRI-----DSLIADIGTW- 339
           M  +  +        +  T+  +   K + I +  G    KN +      SL   +    
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA---KNLVVSGPPQSLYG-LNLTL 393

Query: 340 -GASAVTVHGRTRQ---QRYSKLA-DW-----------DYIYQCARKASDDLQ---VLGN 380
             A A +   ++R    +R  KL                 +   +   + DL    V  N
Sbjct: 394 RKAKAPSGLDQSRIPFSER--KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451

Query: 381 GD-----IYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWD-ITSGERLNI 434
                  +Y   D     SD   L+  +  R   I   I         W+  T  +  +I
Sbjct: 452 AKDIQIPVYDTFDG----SDLRVLSGSISER---IVDCIIR---LPVKWETTTQFKATHI 501

Query: 435 MKDFARFGLEHWGS------DKKGVETTRHFLLEWLSYTCRYIPVGLLDVIP 480
           + DF   G    G       D  GV               R I  G LD+ P
Sbjct: 502 L-DFGPGGASGLGVLTHRNKDGTGV---------------RVIVAGTLDINP 537


>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
           alpha-beta barrel, beta sandwich, FAD domain alpha/beta
           NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
           SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
          Length = 311

 Score = 35.2 bits (82), Expect = 0.044
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 235 LRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN-KGAGSCLL 293
           L  +  E      + G+           I     V  I++N+ CP     N K  G    
Sbjct: 92  LNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCP-----NVKHGGQAFG 146

Query: 294 TKPMRMKGIIEATSGTVDKPITIK 317
           T P     +++A       P+ +K
Sbjct: 147 TDPEVAAALVKACKAVSKVPLYVK 170


>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
           2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
           d.87.1.1
          Length = 499

 Score = 33.7 bits (78), Expect = 0.14
 Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 1/60 (1%)

Query: 25  RKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNN 84
           R  +     + D+   L    ++      +L      G A+ ++K           +++ 
Sbjct: 89  RVKTLAAAQSADITAQLLSMGVQVIAGRGELIDST-PGLARHRIKATAADGSTSEHEADV 147


>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel,
           flavoprotein, mutant enzyme, oxidoreductase; HET: FMN;
           1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A*
           1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A*
           1jrc_A* 1jqx_A*
          Length = 311

 Score = 33.7 bits (78), Expect = 0.14
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 231 EWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGS 290
                + ++ E      I G         ++ I +       ++N+ CP     N     
Sbjct: 83  VLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCP-----NVPGEP 137

Query: 291 CLLTKPMRMKGIIEATSGTVDKPITIKV 318
            L       + +++       KP+ +K+
Sbjct: 138 QLAYDFEATEKLLKEVFTFFTKPLGVKL 165


>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
           barrel, oxidoreductase; HET: MLY FMN; 2.40A
           {Streptococcus mutans}
          Length = 345

 Score = 33.3 bits (76), Expect = 0.19
 Identities = 17/173 (9%), Positives = 49/173 (28%), Gaps = 24/173 (13%)

Query: 235 LRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLT 294
           L++        + + G  P+     + +++       +++N+ CP     N      +  
Sbjct: 122 LQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCP-----NVPGXPQIAY 176

Query: 295 KPMRMKGIIEATSGTVDKPITIKV----------RTGYFEGKNRIDSLIADIGTWGASAV 344
                  I+        KP+ IK+          +         +  +           +
Sbjct: 177 DFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVI 236

Query: 345 TVHGRTRQQRYS---------KLADWDYIYQCARKASDDLQVLGNGDIYSYLD 388
                    +           K      ++   ++ +  +Q++G G + +  D
Sbjct: 237 EDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRD 289


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 29.6 bits (66), Expect = 2.1
 Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 10/53 (18%)

Query: 99  DSVDESECSPCVPEENNIVNDRPLKKAKSENV-ENCCSVEGDNGVSVLEEDTR 150
           +      C  C      IV       ++ + V   C  V  D  V     DTR
Sbjct: 17  NLNIVLTCPECKVYPPKIVER----FSEGDVVCALCGLVLSDKLV-----DTR 60


>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein
           BC008207 [HOMO sapiens], structural genomics, NPPSFA;
           NMR {Homo sapiens}
          Length = 103

 Score = 27.9 bits (62), Expect = 2.6
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 130 VENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDIL 166
           +E    +E    +  + E+T    +D Q A KI +I 
Sbjct: 35  IEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIF 71


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
           termination, binding, hydrolase, membrane, mRNA
           transport; 2.80A {Schizosaccharomyces pombe}
          Length = 508

 Score = 29.1 bits (66), Expect = 4.8
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 17/51 (33%)

Query: 391 KHKSDCPELASCMIARG---ALIKPWIFTEIKEQRHWDITSGERLNIMKDF 438
           K  ++  E+A  M A G   A +              ++   +R  IM  F
Sbjct: 367 KDTAE--EIARRMTADGHTVACL------------TGNLEGAQRDAIMDSF 403


>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
           protein structure initiati YORK structural genomics
           research consortium; HET: FAD; 1.90A {Sinorhizobium
           meliloti}
          Length = 491

 Score = 28.7 bits (65), Expect = 5.5
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 25  RKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNN 84
            K + V      V  L  KNK+   +   K+         + K+ V  +K +E V+++ N
Sbjct: 109 HKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLG-------QGKVSVTNEKGEEQVLEAKN 161


>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose,
           nucleotidyltransferase, pyrophosphorylase, allostery;
           HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6
           PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A*
           1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B*
           1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A*
           ...
          Length = 293

 Score = 28.2 bits (64), Expect = 6.5
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 297 MRMKGIIEAT-SGTVDKPITIKV 318
           M+ KGII A  SGT   P T+ +
Sbjct: 1   MKRKGIILAGGSGTRLHPATLAI 23


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0811    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,346,981
Number of extensions: 508569
Number of successful extensions: 859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 21
Length of query: 540
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 442
Effective length of database: 3,965,535
Effective search space: 1752766470
Effective search space used: 1752766470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)