RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 009196
         (540 letters)



>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
           {Thermotoga maritima [TaxId: 2336]}
          Length = 305

 Score =  117 bits (294), Expect = 3e-30
 Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 14/277 (5%)

Query: 188 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQ 247
           K+ LAP+    +  FR +    GAD    EM      L        LL     E    VQ
Sbjct: 2   KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQ 60

Query: 248 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 307
           I G+ P+ L+    ++       +ID+N GCP+  VV +GAG  LL      + I+    
Sbjct: 61  IFGSEPNELSEAARIL--SEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELR 118

Query: 308 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 367
            +V    ++K R G+ + +         +   G   V +H RT  Q ++  A+W  +   
Sbjct: 119 KSVSGKFSVKTRLGWEKNEVEEI--YRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVL 176

Query: 368 ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF----TEIKEQRH 423
                  +    +GDI++  D  +   +       ++ARGA+ +PWIF      ++  ++
Sbjct: 177 ----EKRIPTFVSGDIFTPEDAKRAL-EESGCDGLLVARGAIGRPWIFKQIKDFLRSGKY 231

Query: 424 WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFL 460
            + +  E L   +      ++  G  K  VE  +   
Sbjct: 232 SEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLA 268


>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
           lactis, isozyme B [TaxId: 1358]}
          Length = 311

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 28/207 (13%), Positives = 59/207 (28%), Gaps = 26/207 (12%)

Query: 232 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 291
              L  +  E      + G+           I     V  I++N+ CP         G  
Sbjct: 89  LPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK----HGGQA 144

Query: 292 LLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG--------KNRIDSLIADIGTWGASA 343
             T P     +++A       P+ +K+     +             D L       G   
Sbjct: 145 FGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRF 204

Query: 344 VTVHGRTRQQ--------RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD-WNKHKS 394
                +               K      I+Q A+    D+ ++G G + +  D    + +
Sbjct: 205 DLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD--VDIPIIGMGGVANAQDVLEMYMA 262

Query: 395 DCPELASCMIARGALIKPWIFTEIKEQ 421
                ++  +       P++  +I ++
Sbjct: 263 GA---SAVAVGTANFADPFVCPKIIDK 286


>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 324

 Score = 26.8 bits (59), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 240 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFI 272
           +E+L  +      P  +A  V L+D+  TV FI
Sbjct: 9   AEELSALPSGRVQPQQVAAAVALLDEGSTVPFI 41


>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes
           [TaxId: 844]}
          Length = 328

 Score = 26.6 bits (58), Expect = 8.5
 Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 13/130 (10%)

Query: 305 ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYS---KLADW 361
           AT GT+       V++ Y  G   +D L+A +      A T+ G       S       W
Sbjct: 8   ATGGTIAGSGESSVKSSYSAGAVTVDKLLAAVPAINDLA-TIKGEQISSIGSQEMTGKVW 66

Query: 362 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 421
             + +   +     +                  +     +  +      KP +       
Sbjct: 67  LKLAKRVNELLAQKETEA----VIITHGTDTMEETAFFLNLTVKSQ---KPVVLV--GAM 117

Query: 422 RHWDITSGER 431
           R     S + 
Sbjct: 118 RPGSSMSADG 127


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,050,224
Number of extensions: 97210
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 5
Length of query: 540
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 450
Effective length of database: 1,171,896
Effective search space: 527353200
Effective search space used: 527353200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)