Query 009198
Match_columns 540
No_of_seqs 286 out of 2761
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 21:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 8.8E-58 1.9E-62 476.0 50.4 513 16-538 52-564 (567)
2 TIGR02731 phytoene_desat phyto 100.0 3.4E-46 7.3E-51 384.2 45.8 447 59-518 1-452 (453)
3 TIGR02732 zeta_caro_desat caro 100.0 2E-42 4.3E-47 354.4 43.8 443 59-519 1-474 (474)
4 PLN02487 zeta-carotene desatur 100.0 6.1E-42 1.3E-46 352.1 47.1 455 56-529 74-560 (569)
5 PRK07233 hypothetical protein; 100.0 1.8E-37 3.9E-42 319.2 40.0 425 59-523 1-432 (434)
6 COG3349 Uncharacterized conser 100.0 7.5E-37 1.6E-41 298.7 27.3 451 58-527 1-468 (485)
7 PRK12416 protoporphyrinogen ox 100.0 8.4E-36 1.8E-40 307.9 35.1 423 58-523 2-462 (463)
8 TIGR00562 proto_IX_ox protopor 100.0 1.8E-35 4E-40 306.0 33.1 419 57-523 2-461 (462)
9 PRK11883 protoporphyrinogen ox 100.0 5.2E-35 1.1E-39 302.2 35.5 417 58-520 1-450 (451)
10 PLN02268 probable polyamine ox 100.0 9.3E-36 2E-40 305.3 29.6 421 58-522 1-434 (435)
11 TIGR03467 HpnE squalene-associ 100.0 6.3E-34 1.4E-38 291.6 41.0 414 71-519 1-418 (419)
12 PLN02576 protoporphyrinogen ox 100.0 6E-35 1.3E-39 304.5 33.6 432 55-529 10-494 (496)
13 COG1232 HemY Protoporphyrinoge 100.0 1.3E-34 2.7E-39 285.2 30.7 409 58-519 1-443 (444)
14 PRK07208 hypothetical protein; 100.0 4.8E-34 1E-38 296.3 35.5 424 56-521 3-460 (479)
15 PLN02676 polyamine oxidase 100.0 5.7E-34 1.2E-38 292.0 31.8 422 55-524 24-475 (487)
16 TIGR02733 desat_CrtD C-3',4' d 100.0 5.5E-33 1.2E-37 288.8 39.6 430 57-520 1-490 (492)
17 COG1231 Monoamine oxidase [Ami 100.0 4.2E-34 9E-39 273.8 27.6 427 55-524 5-449 (450)
18 PLN02529 lysine-specific histo 100.0 1.3E-32 2.7E-37 288.4 36.2 428 55-526 158-602 (738)
19 KOG0029 Amine oxidase [Seconda 100.0 6.4E-33 1.4E-37 280.2 31.2 428 54-524 12-461 (501)
20 PLN02568 polyamine oxidase 100.0 1.5E-32 3.2E-37 283.2 33.5 446 56-523 4-536 (539)
21 TIGR02734 crtI_fam phytoene de 100.0 2.5E-32 5.4E-37 284.8 34.4 433 60-526 1-496 (502)
22 TIGR02730 carot_isom carotene 100.0 1.1E-31 2.4E-36 278.5 38.1 430 58-522 1-492 (493)
23 PLN03000 amine oxidase 100.0 8.5E-32 1.9E-36 282.4 33.7 429 55-528 182-629 (881)
24 KOG0685 Flavin-containing amin 100.0 2E-32 4.4E-37 261.6 26.4 432 55-526 19-495 (498)
25 PLN02328 lysine-specific histo 100.0 2.7E-31 5.9E-36 279.3 35.1 428 55-527 236-684 (808)
26 PLN02976 amine oxidase 100.0 6.5E-31 1.4E-35 282.1 33.4 429 56-524 692-1188(1713)
27 PF01593 Amino_oxidase: Flavin 100.0 8.4E-32 1.8E-36 277.9 17.0 429 67-519 1-450 (450)
28 KOG1276 Protoporphyrinogen oxi 100.0 3.1E-26 6.7E-31 215.5 26.5 424 55-519 9-490 (491)
29 KOG4254 Phytoene desaturase [C 100.0 4E-26 8.7E-31 215.5 26.6 244 269-528 252-552 (561)
30 COG1233 Phytoene dehydrogenase 100.0 7.1E-26 1.5E-30 232.8 28.7 432 56-521 2-482 (487)
31 COG3380 Predicted NAD/FAD-depe 99.9 3.6E-24 7.8E-29 189.7 13.2 322 58-522 2-331 (331)
32 COG2907 Predicted NAD/FAD-bind 99.9 1.3E-22 2.7E-27 185.9 21.8 284 55-371 6-302 (447)
33 PRK13977 myosin-cross-reactive 99.9 6.6E-19 1.4E-23 178.1 30.4 429 54-520 19-522 (576)
34 TIGR03329 Phn_aa_oxid putative 99.8 5E-17 1.1E-21 167.3 24.7 61 281-346 182-242 (460)
35 PTZ00363 rab-GDP dissociation 99.8 2E-16 4.3E-21 159.2 23.4 258 55-336 2-286 (443)
36 TIGR01373 soxB sarcosine oxida 99.7 4.8E-16 1E-20 158.2 23.1 201 281-520 182-384 (407)
37 PRK00711 D-amino acid dehydrog 99.7 6.1E-16 1.3E-20 158.1 21.5 202 281-521 200-402 (416)
38 PF01266 DAO: FAD dependent ox 99.7 3.2E-17 6.8E-22 164.2 10.9 63 281-346 146-208 (358)
39 PRK12409 D-amino acid dehydrog 99.7 9.6E-15 2.1E-19 148.8 22.9 204 281-520 196-405 (410)
40 TIGR01377 soxA_mon sarcosine o 99.7 2.6E-14 5.6E-19 144.4 24.7 208 281-521 144-360 (380)
41 PRK11259 solA N-methyltryptoph 99.6 7.3E-14 1.6E-18 140.9 24.9 62 281-346 148-209 (376)
42 PRK11101 glpA sn-glycerol-3-ph 99.6 1.6E-13 3.4E-18 143.7 25.0 62 281-344 148-214 (546)
43 COG0665 DadA Glycine/D-amino a 99.6 2E-13 4.3E-18 138.3 23.5 57 281-340 155-212 (387)
44 KOG2820 FAD-dependent oxidored 99.6 2.9E-13 6.3E-18 124.7 20.4 66 281-347 152-218 (399)
45 TIGR00031 UDP-GALP_mutase UDP- 99.6 1.8E-13 4E-18 134.5 20.1 241 58-342 2-249 (377)
46 PRK01747 mnmC bifunctional tRN 99.6 4.1E-13 8.8E-18 144.5 23.9 69 274-346 398-468 (662)
47 COG2081 Predicted flavoprotein 99.5 4.1E-14 8.8E-19 134.6 12.4 60 281-342 110-169 (408)
48 TIGR03364 HpnW_proposed FAD de 99.5 3.1E-13 6.8E-18 135.6 19.7 59 281-347 144-203 (365)
49 PF06100 Strep_67kDa_ant: Stre 99.5 3.1E-12 6.7E-17 125.9 25.8 252 57-340 2-274 (500)
50 COG0579 Predicted dehydrogenas 99.5 2.3E-13 5.1E-18 134.0 17.0 95 281-386 152-249 (429)
51 COG0578 GlpA Glycerol-3-phosph 99.5 1.9E-12 4.2E-17 130.1 22.7 155 272-443 153-316 (532)
52 PF03486 HI0933_like: HI0933-l 99.5 5.7E-14 1.2E-18 140.0 11.0 66 274-340 101-166 (409)
53 PRK10157 putative oxidoreducta 99.5 1.9E-12 4.1E-17 131.9 21.0 56 283-340 109-164 (428)
54 PLN02464 glycerol-3-phosphate 99.5 8.4E-12 1.8E-16 132.2 26.4 60 281-340 231-296 (627)
55 PF13450 NAD_binding_8: NAD(P) 99.5 6E-14 1.3E-18 102.1 6.4 66 62-128 1-68 (68)
56 PRK10015 oxidoreductase; Provi 99.5 8.1E-12 1.8E-16 127.1 24.2 56 283-340 109-164 (429)
57 PRK11728 hydroxyglutarate oxid 99.5 1.5E-11 3.3E-16 124.4 23.5 57 281-340 148-204 (393)
58 PRK12266 glpD glycerol-3-phosp 99.5 2.9E-11 6.3E-16 125.7 26.1 58 281-340 154-216 (508)
59 PRK13369 glycerol-3-phosphate 99.4 3.6E-11 7.8E-16 125.1 24.4 58 281-340 154-215 (502)
60 COG0644 FixC Dehydrogenases (f 99.4 7.9E-11 1.7E-15 119.0 25.3 57 282-339 95-151 (396)
61 PTZ00383 malate:quinone oxidor 99.4 5.9E-12 1.3E-16 128.9 15.3 59 281-341 210-274 (497)
62 PRK08773 2-octaprenyl-3-methyl 99.4 2.4E-10 5.2E-15 115.8 25.1 57 282-340 113-169 (392)
63 PRK07045 putative monooxygenas 99.3 4.5E-10 9.7E-15 113.7 25.5 58 283-340 107-165 (388)
64 COG1635 THI4 Ribulose 1,5-bisp 99.3 1.9E-11 4.2E-16 106.1 12.8 42 56-97 29-70 (262)
65 PF00996 GDI: GDP dissociation 99.3 3.3E-10 7.1E-15 112.8 21.8 252 55-334 2-283 (438)
66 PLN02463 lycopene beta cyclase 99.3 1.1E-09 2.4E-14 111.1 25.9 56 282-340 114-169 (447)
67 TIGR01988 Ubi-OHases Ubiquinon 99.3 8.8E-10 1.9E-14 111.6 25.1 57 282-340 106-163 (385)
68 PRK06481 fumarate reductase fl 99.3 9.4E-11 2E-15 122.0 18.2 58 282-340 190-251 (506)
69 PRK05714 2-octaprenyl-3-methyl 99.3 1.9E-09 4.1E-14 109.7 27.3 63 282-346 112-175 (405)
70 PRK06847 hypothetical protein; 99.3 1.1E-09 2.4E-14 110.3 25.3 57 282-340 107-163 (375)
71 TIGR01984 UbiH 2-polyprenyl-6- 99.3 1.1E-09 2.3E-14 110.8 24.9 62 282-345 105-168 (382)
72 PRK04176 ribulose-1,5-biphosph 99.3 4E-11 8.7E-16 112.7 13.5 60 281-340 103-173 (257)
73 PRK07121 hypothetical protein; 99.3 1.4E-10 3E-15 120.8 18.7 59 282-340 177-239 (492)
74 PLN02697 lycopene epsilon cycl 99.3 3.6E-09 7.9E-14 109.1 28.5 211 282-525 192-413 (529)
75 PRK06185 hypothetical protein; 99.3 2.3E-09 4.9E-14 109.4 26.8 63 283-346 109-176 (407)
76 PRK07364 2-octaprenyl-6-methox 99.3 2.1E-09 4.5E-14 110.0 26.5 38 55-92 16-53 (415)
77 PRK07608 ubiquinone biosynthes 99.3 1.4E-09 3.1E-14 110.1 25.0 56 282-340 111-167 (388)
78 TIGR02352 thiamin_ThiO glycine 99.3 4.8E-10 1E-14 111.3 21.0 200 281-520 136-335 (337)
79 TIGR00292 thiazole biosynthesi 99.3 1.1E-10 2.5E-15 109.2 15.3 59 282-340 100-170 (254)
80 PRK08020 ubiF 2-octaprenyl-3-m 99.3 1.5E-09 3.2E-14 110.1 24.7 57 282-340 112-169 (391)
81 COG0654 UbiH 2-polyprenyl-6-me 99.3 2.6E-09 5.7E-14 107.8 25.7 63 282-346 104-169 (387)
82 PRK06184 hypothetical protein; 99.3 1.6E-09 3.4E-14 113.3 24.9 62 283-346 110-175 (502)
83 TIGR02032 GG-red-SF geranylger 99.3 4.9E-09 1.1E-13 101.9 26.3 57 282-340 91-148 (295)
84 PRK07333 2-octaprenyl-6-methox 99.2 1.9E-09 4.2E-14 109.7 24.1 57 282-340 111-167 (403)
85 PRK07494 2-octaprenyl-6-methox 99.2 4E-10 8.6E-15 114.1 18.9 57 282-340 111-167 (388)
86 PLN00093 geranylgeranyl diphos 99.2 1.5E-08 3.3E-13 103.5 29.4 38 53-90 35-72 (450)
87 PRK08274 tricarballylate dehyd 99.2 1.8E-10 4E-15 119.3 15.8 57 282-339 131-191 (466)
88 KOG2844 Dimethylglycine dehydr 99.2 5.1E-11 1.1E-15 119.1 10.8 58 281-340 186-243 (856)
89 PRK07190 hypothetical protein; 99.2 7.8E-09 1.7E-13 106.9 27.5 61 284-346 111-172 (487)
90 TIGR01813 flavo_cyto_c flavocy 99.2 8.2E-11 1.8E-15 121.0 12.9 59 282-340 130-192 (439)
91 PRK09126 hypothetical protein; 99.2 1.9E-09 4E-14 109.4 22.4 56 283-340 111-167 (392)
92 KOG2853 Possible oxidoreductas 99.2 3.2E-09 7E-14 98.2 21.4 39 55-93 84-126 (509)
93 PRK07588 hypothetical protein; 99.2 4.7E-09 1E-13 106.3 25.3 55 283-340 104-158 (391)
94 PRK08244 hypothetical protein; 99.2 2.6E-09 5.6E-14 111.5 23.9 60 57-132 2-61 (493)
95 PF01946 Thi4: Thi4 family; PD 99.2 7.4E-11 1.6E-15 103.4 10.1 42 56-97 16-57 (230)
96 TIGR01320 mal_quin_oxido malat 99.2 1.7E-10 3.6E-15 118.7 14.4 67 273-340 167-240 (483)
97 PRK08243 4-hydroxybenzoate 3-m 99.2 9.1E-09 2E-13 104.2 26.8 61 57-133 2-64 (392)
98 PRK06834 hypothetical protein; 99.2 3.6E-09 7.7E-14 109.5 24.0 56 283-340 101-156 (488)
99 PRK05257 malate:quinone oxidor 99.2 4.5E-10 9.7E-15 115.6 17.1 59 281-340 182-246 (494)
100 TIGR01790 carotene-cycl lycope 99.2 1.2E-08 2.7E-13 103.3 27.0 57 282-340 85-141 (388)
101 PRK08013 oxidoreductase; Provi 99.2 1.5E-08 3.2E-13 102.9 27.5 61 283-345 112-174 (400)
102 PRK13339 malate:quinone oxidor 99.2 3.1E-10 6.7E-15 115.8 14.7 59 281-340 183-247 (497)
103 PRK06126 hypothetical protein; 99.2 7E-09 1.5E-13 109.7 25.5 63 55-133 5-67 (545)
104 PRK06183 mhpA 3-(3-hydroxyphen 99.2 1.4E-08 3E-13 107.0 27.4 63 55-133 8-70 (538)
105 PF01494 FAD_binding_3: FAD bi 99.2 8.5E-10 1.8E-14 110.3 16.3 64 282-345 111-178 (356)
106 PF00890 FAD_binding_2: FAD bi 99.2 1.3E-09 2.9E-14 111.4 17.8 59 282-341 141-204 (417)
107 PRK08849 2-octaprenyl-3-methyl 99.2 9.9E-09 2.1E-13 103.6 23.9 55 284-340 112-167 (384)
108 PRK08850 2-octaprenyl-6-methox 99.2 1.1E-08 2.5E-13 104.0 24.4 61 284-346 113-175 (405)
109 PLN02661 Putative thiazole syn 99.1 1.3E-09 2.9E-14 104.7 15.2 42 54-95 89-131 (357)
110 PRK07573 sdhA succinate dehydr 99.1 2.2E-09 4.7E-14 114.3 18.1 54 286-340 174-232 (640)
111 PRK12835 3-ketosteroid-delta-1 99.1 3E-09 6.5E-14 112.3 19.0 59 282-340 213-275 (584)
112 PRK08132 FAD-dependent oxidore 99.1 6.7E-08 1.5E-12 102.2 28.7 65 53-133 19-83 (547)
113 PRK06617 2-octaprenyl-6-methox 99.1 8.7E-09 1.9E-13 103.6 20.8 61 282-345 104-166 (374)
114 TIGR02023 BchP-ChlP geranylger 99.1 3.7E-08 8.1E-13 99.5 25.4 32 58-89 1-32 (388)
115 PRK11445 putative oxidoreducta 99.1 4.6E-08 9.9E-13 97.4 25.5 62 57-131 1-62 (351)
116 PRK05732 2-octaprenyl-6-methox 99.1 3.1E-08 6.8E-13 100.6 24.9 55 284-340 114-169 (395)
117 PRK12845 3-ketosteroid-delta-1 99.1 3.1E-09 6.8E-14 111.4 17.6 58 282-340 217-278 (564)
118 PRK06175 L-aspartate oxidase; 99.1 1.8E-09 3.9E-14 110.0 15.5 58 282-340 128-189 (433)
119 TIGR01989 COQ6 Ubiquinone bios 99.1 4.1E-08 9E-13 100.7 25.1 58 283-340 118-183 (437)
120 TIGR02028 ChlP geranylgeranyl 99.1 1.1E-07 2.4E-12 96.1 27.5 35 58-92 1-35 (398)
121 PRK12839 hypothetical protein; 99.1 5.9E-09 1.3E-13 109.7 18.8 60 281-340 213-276 (572)
122 PRK06996 hypothetical protein; 99.1 1.8E-08 3.8E-13 102.3 21.8 63 282-346 115-182 (398)
123 PLN02985 squalene monooxygenas 99.1 1.2E-07 2.5E-12 98.6 28.0 64 54-133 40-103 (514)
124 PRK08958 sdhA succinate dehydr 99.1 3.5E-09 7.5E-14 111.9 16.9 59 282-340 143-206 (588)
125 PRK06134 putative FAD-binding 99.1 3.7E-09 8E-14 111.8 17.0 58 282-340 217-278 (581)
126 PRK07804 L-aspartate oxidase; 99.1 3.1E-09 6.7E-14 111.4 16.2 59 282-340 144-210 (541)
127 PF13738 Pyr_redox_3: Pyridine 99.1 1.1E-09 2.3E-14 100.2 11.3 55 284-340 84-138 (203)
128 KOG2852 Possible oxidoreductas 99.1 5.5E-09 1.2E-13 94.6 15.2 64 281-347 146-214 (380)
129 PRK07395 L-aspartate oxidase; 99.1 2.7E-09 5.9E-14 111.7 15.5 59 282-340 134-197 (553)
130 PRK06452 sdhA succinate dehydr 99.1 2.5E-09 5.5E-14 112.6 15.2 58 282-340 136-198 (566)
131 PRK09078 sdhA succinate dehydr 99.1 5.1E-09 1.1E-13 110.9 17.4 59 282-340 149-212 (598)
132 PRK07843 3-ketosteroid-delta-1 99.1 4E-09 8.7E-14 111.0 16.5 44 55-98 5-48 (557)
133 PLN00128 Succinate dehydrogena 99.1 4.5E-09 9.8E-14 111.5 16.9 59 282-340 187-250 (635)
134 TIGR00275 flavoprotein, HI0933 99.1 2.7E-09 5.9E-14 107.7 14.6 57 281-340 104-160 (400)
135 PTZ00139 Succinate dehydrogena 99.1 6.1E-09 1.3E-13 110.5 17.8 59 282-340 166-229 (617)
136 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 6.3E-08 1.4E-12 97.8 24.4 63 57-133 2-64 (390)
137 COG0562 Glf UDP-galactopyranos 99.0 1.1E-09 2.4E-14 100.8 10.4 239 57-343 1-244 (374)
138 PRK12842 putative succinate de 99.0 6.6E-09 1.4E-13 110.0 17.8 58 282-340 214-275 (574)
139 TIGR03197 MnmC_Cterm tRNA U-34 99.0 1.4E-08 3E-13 102.4 18.9 61 281-345 134-194 (381)
140 PRK08163 salicylate hydroxylas 99.0 4.6E-09 9.9E-14 106.7 15.3 57 282-340 109-166 (396)
141 PRK08294 phenol 2-monooxygenas 99.0 1.1E-07 2.3E-12 101.5 26.1 61 55-133 30-93 (634)
142 TIGR01812 sdhA_frdA_Gneg succi 99.0 4.8E-09 1E-13 111.2 15.7 58 282-340 129-191 (566)
143 TIGR00551 nadB L-aspartate oxi 99.0 6.8E-09 1.5E-13 107.8 16.4 58 282-340 128-189 (488)
144 PF05834 Lycopene_cycl: Lycope 99.0 5.8E-08 1.3E-12 97.3 22.4 197 282-524 87-290 (374)
145 PRK12844 3-ketosteroid-delta-1 99.0 6E-09 1.3E-13 109.6 16.0 58 282-340 208-269 (557)
146 TIGR03378 glycerol3P_GlpB glyc 99.0 1.3E-09 2.9E-14 107.6 10.4 63 282-345 263-327 (419)
147 PLN02815 L-aspartate oxidase 99.0 5.4E-09 1.2E-13 109.9 15.3 59 282-340 155-222 (594)
148 PRK07057 sdhA succinate dehydr 99.0 1.8E-08 4E-13 106.6 18.7 59 282-340 148-211 (591)
149 PRK05945 sdhA succinate dehydr 99.0 4.9E-09 1.1E-13 110.9 14.3 58 282-340 135-197 (575)
150 PRK08401 L-aspartate oxidase; 99.0 1.3E-08 2.9E-13 104.9 17.0 56 282-340 120-175 (466)
151 PRK06263 sdhA succinate dehydr 99.0 1.6E-08 3.4E-13 106.4 17.9 59 282-340 134-197 (543)
152 PRK12843 putative FAD-binding 99.0 3.1E-08 6.8E-13 104.8 20.1 58 282-340 221-282 (578)
153 PRK07538 hypothetical protein; 99.0 4.9E-07 1.1E-11 92.2 28.1 59 58-132 1-59 (413)
154 PRK12834 putative FAD-binding 99.0 1.6E-08 3.5E-13 106.5 17.0 42 56-97 3-46 (549)
155 PF04820 Trp_halogenase: Trypt 99.0 6.1E-09 1.3E-13 106.4 13.4 58 282-340 154-211 (454)
156 PRK08626 fumarate reductase fl 99.0 3.1E-09 6.7E-14 113.4 11.5 58 282-340 158-220 (657)
157 PRK05192 tRNA uridine 5-carbox 99.0 6.6E-09 1.4E-13 107.2 13.4 57 282-340 100-157 (618)
158 PRK06475 salicylate hydroxylas 99.0 1.9E-07 4.1E-12 94.9 23.9 60 58-133 3-62 (400)
159 PRK07803 sdhA succinate dehydr 98.9 1.3E-08 2.9E-13 108.3 15.5 41 56-96 7-47 (626)
160 PRK08205 sdhA succinate dehydr 98.9 1.2E-08 2.7E-13 107.9 15.2 59 282-340 140-206 (583)
161 PLN02172 flavin-containing mon 98.9 5.7E-09 1.2E-13 106.6 12.2 44 55-98 8-51 (461)
162 PRK08641 sdhA succinate dehydr 98.9 1.4E-08 2.9E-13 107.6 15.3 59 282-340 133-200 (589)
163 PRK12837 3-ketosteroid-delta-1 98.9 3.9E-08 8.5E-13 102.6 18.5 42 55-97 5-46 (513)
164 PRK06069 sdhA succinate dehydr 98.9 3.7E-08 8E-13 104.4 18.1 58 282-340 137-200 (577)
165 PRK05329 anaerobic glycerol-3- 98.9 1.1E-08 2.3E-13 102.7 13.2 57 283-340 260-318 (422)
166 PRK08071 L-aspartate oxidase; 98.9 1.6E-08 3.6E-13 105.2 14.7 57 282-340 130-190 (510)
167 PF12831 FAD_oxidored: FAD dep 98.9 1.4E-09 3.1E-14 110.8 6.6 61 287-348 95-158 (428)
168 TIGR01176 fum_red_Fp fumarate 98.9 2.1E-08 4.6E-13 105.7 15.0 58 282-340 132-195 (580)
169 PRK09231 fumarate reductase fl 98.9 2E-08 4.4E-13 106.1 14.8 58 282-340 133-196 (582)
170 PTZ00306 NADH-dependent fumara 98.9 2.2E-08 4.8E-13 113.7 16.0 43 55-97 407-449 (1167)
171 PRK06854 adenylylsulfate reduc 98.9 3.4E-08 7.4E-13 104.8 16.5 58 282-340 132-195 (608)
172 PRK07512 L-aspartate oxidase; 98.9 1.6E-08 3.4E-13 105.4 13.6 58 282-340 136-197 (513)
173 TIGR01811 sdhA_Bsu succinate d 98.9 2.3E-08 5E-13 105.9 14.9 59 282-340 129-196 (603)
174 TIGR02485 CobZ_N-term precorri 98.9 3.2E-08 6.9E-13 101.4 15.4 59 281-339 122-182 (432)
175 PRK08275 putative oxidoreducta 98.9 5.2E-08 1.1E-12 102.7 17.1 59 282-340 137-200 (554)
176 PRK07236 hypothetical protein; 98.9 3.2E-08 6.9E-13 100.0 13.9 62 56-132 5-66 (386)
177 PF01134 GIDA: Glucose inhibit 98.8 5.2E-08 1.1E-12 95.4 14.1 56 283-340 96-152 (392)
178 PRK09077 L-aspartate oxidase; 98.8 5E-08 1.1E-12 102.3 15.0 59 282-340 138-207 (536)
179 PF13454 NAD_binding_9: FAD-NA 98.8 3.9E-08 8.5E-13 85.3 11.8 50 286-338 105-155 (156)
180 COG2509 Uncharacterized FAD-de 98.8 1E-06 2.3E-11 85.6 22.4 59 281-340 172-230 (486)
181 PRK06753 hypothetical protein; 98.8 9.7E-09 2.1E-13 103.4 9.2 36 58-93 1-36 (373)
182 PRK05249 soluble pyridine nucl 98.8 3E-08 6.6E-13 102.7 13.0 60 282-343 216-275 (461)
183 KOG2614 Kynurenine 3-monooxyge 98.8 1E-07 2.2E-12 91.6 14.8 38 57-94 2-39 (420)
184 KOG0042 Glycerol-3-phosphate d 98.8 3.5E-08 7.6E-13 97.0 11.9 72 269-340 211-287 (680)
185 PRK06116 glutathione reductase 98.8 5.1E-09 1.1E-13 108.0 6.6 57 283-340 209-265 (450)
186 COG4716 Myosin-crossreactive a 98.8 1.8E-08 4E-13 94.5 9.3 254 56-337 21-289 (587)
187 KOG2404 Fumarate reductase, fl 98.8 3.7E-08 8E-13 90.6 11.1 39 59-97 11-49 (477)
188 TIGR01372 soxA sarcosine oxida 98.8 2.6E-07 5.5E-12 103.7 19.5 43 56-98 162-204 (985)
189 PRK05868 hypothetical protein; 98.8 1.4E-07 3.1E-12 94.5 15.8 50 294-345 116-166 (372)
190 PF00732 GMC_oxred_N: GMC oxid 98.8 5E-08 1.1E-12 94.8 12.2 61 285-345 195-263 (296)
191 TIGR01292 TRX_reduct thioredox 98.8 5.9E-08 1.3E-12 94.6 12.1 37 58-95 1-37 (300)
192 TIGR03219 salicylate_mono sali 98.8 1.9E-08 4.2E-13 102.6 8.5 54 283-340 106-159 (414)
193 PRK12831 putative oxidoreducta 98.8 4.9E-07 1.1E-11 93.1 18.7 44 54-97 137-180 (464)
194 TIGR01421 gluta_reduc_1 glutat 98.8 1.6E-08 3.5E-13 103.9 7.7 61 282-343 207-268 (450)
195 PF06039 Mqo: Malate:quinone o 98.7 3.8E-08 8.2E-13 96.3 9.6 62 281-343 180-247 (488)
196 TIGR01350 lipoamide_DH dihydro 98.7 6.1E-08 1.3E-12 100.4 11.8 57 282-340 211-269 (461)
197 TIGR01316 gltA glutamate synth 98.7 5.1E-07 1.1E-11 92.8 18.4 43 55-97 131-173 (449)
198 PTZ00367 squalene epoxidase; P 98.7 3.3E-06 7.1E-11 88.4 24.3 65 54-133 30-94 (567)
199 COG3075 GlpB Anaerobic glycero 98.7 2.4E-07 5.1E-12 85.9 13.7 62 283-345 259-322 (421)
200 TIGR02061 aprA adenosine phosp 98.7 3.8E-07 8.2E-12 96.2 16.7 58 283-340 127-191 (614)
201 TIGR03377 glycerol3P_GlpA glyc 98.7 2.9E-06 6.2E-11 89.1 23.1 62 281-344 127-193 (516)
202 TIGR01424 gluta_reduc_2 glutat 98.7 1.2E-07 2.5E-12 97.6 12.4 41 57-98 2-42 (446)
203 TIGR00136 gidA glucose-inhibit 98.7 9.7E-08 2.1E-12 98.5 11.4 61 282-343 96-157 (617)
204 KOG2665 Predicted FAD-dependen 98.7 1.3E-06 2.8E-11 80.5 17.3 60 54-116 45-106 (453)
205 PRK09897 hypothetical protein; 98.7 1.3E-07 2.8E-12 97.8 12.3 55 283-339 108-165 (534)
206 COG0029 NadB Aspartate oxidase 98.7 1.4E-06 3.1E-11 85.8 18.7 57 282-338 133-194 (518)
207 PRK12769 putative oxidoreducta 98.7 3.8E-07 8.3E-12 98.2 16.3 44 55-98 325-368 (654)
208 KOG2415 Electron transfer flav 98.7 4.2E-08 9.2E-13 93.3 7.5 58 281-338 182-254 (621)
209 COG2072 TrkA Predicted flavopr 98.7 2.9E-07 6.3E-12 93.8 14.3 45 54-98 5-50 (443)
210 TIGR03140 AhpF alkyl hydropero 98.7 1E-07 2.2E-12 99.7 11.1 54 285-340 270-323 (515)
211 PRK07251 pyridine nucleotide-d 98.7 2.1E-07 4.6E-12 95.6 13.2 40 57-96 3-43 (438)
212 PRK06115 dihydrolipoamide dehy 98.7 2.1E-07 4.5E-12 96.2 13.0 42 57-98 3-44 (466)
213 PRK15317 alkyl hydroperoxide r 98.7 1.2E-07 2.5E-12 99.4 11.3 55 284-340 268-322 (517)
214 PRK12775 putative trifunctiona 98.7 1.3E-06 2.9E-11 97.5 19.5 44 55-98 428-471 (1006)
215 TIGR01789 lycopene_cycl lycope 98.6 1.7E-06 3.7E-11 86.4 17.7 36 59-94 1-38 (370)
216 COG1249 Lpd Pyruvate/2-oxoglut 98.6 4.3E-07 9.3E-12 91.7 13.3 71 268-340 194-272 (454)
217 PRK11749 dihydropyrimidine deh 98.6 2.6E-06 5.6E-11 88.0 19.4 43 55-97 138-180 (457)
218 PRK06370 mercuric reductase; V 98.6 1.6E-07 3.4E-12 97.3 10.4 58 283-340 213-271 (463)
219 PRK06416 dihydrolipoamide dehy 98.6 3.6E-07 7.8E-12 94.7 12.8 41 56-97 3-43 (462)
220 PRK07818 dihydrolipoamide dehy 98.6 4.8E-07 1E-11 93.7 13.1 56 283-340 214-273 (466)
221 PRK12810 gltD glutamate syntha 98.6 3.2E-06 6.8E-11 87.6 18.7 43 55-97 141-183 (471)
222 PRK06327 dihydrolipoamide dehy 98.6 3.6E-07 7.7E-12 94.8 11.6 33 56-88 3-35 (475)
223 PRK05976 dihydrolipoamide dehy 98.6 5.3E-07 1.1E-11 93.6 12.7 42 56-98 3-44 (472)
224 KOG1399 Flavin-containing mono 98.6 3.3E-07 7.1E-12 92.1 10.6 43 56-98 5-47 (448)
225 PRK12778 putative bifunctional 98.6 2.3E-06 5.1E-11 93.7 18.0 43 55-97 429-471 (752)
226 TIGR02462 pyranose_ox pyranose 98.6 4.2E-06 9E-11 86.5 18.6 37 58-94 1-37 (544)
227 PRK13800 putative oxidoreducta 98.5 1.9E-06 4.1E-11 96.0 16.8 37 55-91 11-47 (897)
228 COG0492 TrxB Thioredoxin reduc 98.5 5.6E-07 1.2E-11 86.3 11.1 43 482-525 261-303 (305)
229 COG1252 Ndh NADH dehydrogenase 98.5 1.9E-06 4.1E-11 84.9 14.8 54 281-340 208-262 (405)
230 PRK06467 dihydrolipoamide dehy 98.5 2.2E-06 4.8E-11 88.7 16.1 42 56-97 3-44 (471)
231 TIGR01318 gltD_gamma_fam gluta 98.5 8.3E-06 1.8E-10 84.2 20.0 43 55-97 139-181 (467)
232 PRK10262 thioredoxin reductase 98.5 5.1E-07 1.1E-11 88.8 10.7 43 55-98 4-46 (321)
233 TIGR03143 AhpF_homolog putativ 98.5 4.6E-07 1E-11 95.5 10.8 40 56-96 3-42 (555)
234 PTZ00058 glutathione reductase 98.5 1E-06 2.2E-11 92.2 13.2 43 55-98 46-88 (561)
235 PLN02927 antheraxanthin epoxid 98.5 6.9E-07 1.5E-11 94.1 11.1 36 55-90 79-114 (668)
236 KOG1439 RAB proteins geranylge 98.5 2.6E-06 5.6E-11 81.4 13.5 254 56-335 3-284 (440)
237 PRK12809 putative oxidoreducta 98.5 6.2E-06 1.3E-10 88.6 17.9 43 55-97 308-350 (639)
238 TIGR01810 betA choline dehydro 98.4 3.5E-06 7.5E-11 88.8 14.8 59 285-344 196-259 (532)
239 PLN02507 glutathione reductase 98.4 1.3E-06 2.8E-11 90.9 11.2 34 55-88 23-56 (499)
240 COG3573 Predicted oxidoreducta 98.4 5.1E-06 1.1E-10 77.2 13.7 40 56-95 4-45 (552)
241 PRK02106 choline dehydrogenase 98.4 2E-06 4.3E-11 91.2 12.7 37 55-91 3-40 (560)
242 KOG1335 Dihydrolipoamide dehyd 98.4 4.4E-06 9.5E-11 79.2 12.4 43 56-98 38-80 (506)
243 KOG1298 Squalene monooxygenase 98.4 6.7E-06 1.5E-10 78.0 13.2 36 54-89 42-77 (509)
244 COG1053 SdhA Succinate dehydro 98.4 4.6E-06 9.9E-11 86.8 13.1 44 55-98 4-47 (562)
245 PRK12771 putative glutamate sy 98.3 3.6E-05 7.8E-10 81.7 19.9 43 55-97 135-177 (564)
246 PRK07845 flavoprotein disulfid 98.3 3.4E-06 7.3E-11 87.3 11.3 40 58-98 2-41 (466)
247 COG5044 MRS6 RAB proteins gera 98.2 8E-05 1.7E-09 70.6 16.4 250 56-335 5-279 (434)
248 PRK14989 nitrite reductase sub 98.2 4.2E-05 9E-10 84.1 16.3 61 284-344 189-249 (847)
249 COG4529 Uncharacterized protei 98.2 1.6E-05 3.4E-10 78.7 11.3 40 57-96 1-43 (474)
250 PRK09564 coenzyme A disulfide 98.2 2.6E-05 5.7E-10 80.5 13.5 56 282-340 191-246 (444)
251 KOG3923 D-aspartate oxidase [A 98.1 7.7E-05 1.7E-09 68.6 14.4 185 282-523 151-338 (342)
252 TIGR03315 Se_ygfK putative sel 98.1 3.5E-06 7.7E-11 92.6 6.7 43 56-98 536-578 (1012)
253 PRK13512 coenzyme A disulfide 98.1 3.7E-05 7.9E-10 79.0 13.7 52 283-340 190-241 (438)
254 PLN02852 ferredoxin-NADP+ redu 98.1 4E-06 8.6E-11 85.8 6.4 44 55-98 24-69 (491)
255 PRK12779 putative bifunctional 98.1 3.6E-06 7.9E-11 93.2 6.1 43 55-97 304-346 (944)
256 PRK09754 phenylpropionate diox 98.1 4.1E-05 8.9E-10 77.6 12.8 49 289-340 193-241 (396)
257 PTZ00318 NADH dehydrogenase-li 98.1 7.3E-05 1.6E-09 76.4 14.6 53 282-340 228-280 (424)
258 COG1148 HdrA Heterodisulfide r 98.1 4E-06 8.7E-11 81.9 4.8 44 55-98 122-165 (622)
259 COG0445 GidA Flavin-dependent 98.0 3.1E-05 6.7E-10 77.3 10.3 48 296-344 115-162 (621)
260 PRK08010 pyridine nucleotide-d 98.0 6.8E-06 1.5E-10 84.6 5.3 58 282-342 199-256 (441)
261 KOG0405 Pyridine nucleotide-di 98.0 8.6E-06 1.9E-10 76.2 5.3 48 51-98 14-61 (478)
262 PRK09853 putative selenate red 98.0 9.1E-06 2E-10 89.0 6.4 44 55-98 537-580 (1019)
263 PF07156 Prenylcys_lyase: Pren 98.0 0.00018 4E-09 70.9 14.1 114 206-340 69-187 (368)
264 TIGR03169 Nterm_to_SelD pyridi 97.9 0.0001 2.2E-09 73.9 12.3 52 283-340 192-243 (364)
265 TIGR03452 mycothione_red mycot 97.9 6E-05 1.3E-09 77.7 10.7 39 57-98 2-40 (452)
266 PF00743 FMO-like: Flavin-bind 97.9 1.2E-05 2.6E-10 83.6 5.2 40 58-97 2-41 (531)
267 PTZ00188 adrenodoxin reductase 97.9 1.9E-05 4.2E-10 79.6 6.4 43 56-98 38-81 (506)
268 PRK06292 dihydrolipoamide dehy 97.9 1.3E-05 2.8E-10 83.1 5.2 41 56-97 2-42 (460)
269 PRK05335 tRNA (uracil-5-)-meth 97.9 1.7E-05 3.6E-10 78.8 5.4 37 57-93 2-38 (436)
270 PRK06567 putative bifunctional 97.9 2E-05 4.4E-10 85.3 6.2 41 54-94 380-420 (1028)
271 TIGR02053 MerA mercuric reduct 97.9 1.8E-05 3.9E-10 82.0 5.5 56 283-340 208-266 (463)
272 PRK14727 putative mercuric red 97.8 2.3E-05 5E-10 81.4 5.9 45 54-98 13-57 (479)
273 PRK12814 putative NADPH-depend 97.8 2.9E-05 6.3E-10 83.5 6.6 43 55-97 191-233 (652)
274 PRK14694 putative mercuric red 97.8 2.3E-05 5.1E-10 81.2 5.7 60 282-344 218-277 (468)
275 PF00070 Pyr_redox: Pyridine n 97.8 4.3E-05 9.4E-10 57.8 5.5 35 59-93 1-35 (80)
276 PRK04965 NADH:flavorubredoxin 97.8 0.00026 5.7E-09 71.3 12.5 50 289-340 190-239 (377)
277 TIGR02374 nitri_red_nirB nitri 97.8 0.00024 5.2E-09 78.1 13.0 50 289-340 189-238 (785)
278 KOG4405 GDP dissociation inhib 97.8 0.0019 4.2E-08 62.2 16.9 117 204-335 220-340 (547)
279 PRK13748 putative mercuric red 97.8 2.6E-05 5.7E-10 83.0 5.2 59 282-343 310-368 (561)
280 PRK05976 dihydrolipoamide dehy 97.7 0.00034 7.3E-09 72.7 12.8 33 58-90 181-213 (472)
281 KOG1336 Monodehydroascorbate/f 97.7 0.00029 6.3E-09 69.5 11.0 59 288-346 261-319 (478)
282 PTZ00052 thioredoxin reductase 97.7 3.6E-05 7.7E-10 80.2 5.1 61 283-345 223-283 (499)
283 TIGR02374 nitri_red_nirB nitri 97.7 0.00014 2.9E-09 80.1 9.5 44 293-340 65-108 (785)
284 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 4.2E-05 9.2E-10 76.4 5.0 37 58-94 1-37 (433)
285 PF07992 Pyr_redox_2: Pyridine 97.7 5E-05 1.1E-09 69.1 5.0 33 59-91 1-33 (201)
286 PLN02546 glutathione reductase 97.7 9.8E-05 2.1E-09 77.5 7.7 60 283-343 294-353 (558)
287 TIGR01317 GOGAT_sm_gam glutama 97.7 6.9E-05 1.5E-09 77.8 6.2 42 56-97 142-183 (485)
288 PRK06416 dihydrolipoamide dehy 97.7 0.00045 9.8E-09 71.7 12.2 33 58-90 173-205 (462)
289 KOG2960 Protein involved in th 97.6 1.8E-05 3.8E-10 68.9 1.3 65 56-131 75-143 (328)
290 TIGR02053 MerA mercuric reduct 97.6 0.00077 1.7E-08 69.9 13.4 35 58-92 167-201 (463)
291 PRK07845 flavoprotein disulfid 97.6 0.00078 1.7E-08 69.8 13.4 51 290-342 226-276 (466)
292 COG0493 GltD NADPH-dependent g 97.6 7.9E-05 1.7E-09 75.6 5.7 43 56-98 122-164 (457)
293 PRK12770 putative glutamate sy 97.6 9.9E-05 2.2E-09 73.5 6.4 42 56-97 17-58 (352)
294 TIGR01423 trypano_reduc trypan 97.6 7E-05 1.5E-09 77.5 5.2 61 282-343 231-291 (486)
295 KOG0399 Glutamate synthase [Am 97.6 8.5E-05 1.8E-09 79.4 5.4 44 55-98 1783-1826(2142)
296 TIGR01423 trypano_reduc trypan 97.6 0.00082 1.8E-08 69.7 12.7 36 57-92 187-225 (486)
297 PRK05675 sdhA succinate dehydr 97.5 0.0014 2.9E-08 69.6 13.8 59 282-340 126-189 (570)
298 PLN02507 glutathione reductase 97.5 0.00086 1.9E-08 69.9 12.1 52 290-343 252-303 (499)
299 TIGR01424 gluta_reduc_2 glutat 97.5 0.00087 1.9E-08 69.1 12.0 49 290-340 215-263 (446)
300 PTZ00153 lipoamide dehydrogena 97.5 0.00011 2.5E-09 78.2 5.3 43 56-98 115-158 (659)
301 TIGR03385 CoA_CoA_reduc CoA-di 97.5 0.001 2.2E-08 68.2 12.2 47 290-340 187-233 (427)
302 COG0446 HcaD Uncharacterized N 97.5 0.00078 1.7E-08 68.8 11.3 38 57-94 136-173 (415)
303 PRK06912 acoL dihydrolipoamide 97.5 0.00012 2.7E-09 75.6 5.4 55 283-340 212-268 (458)
304 PTZ00058 glutathione reductase 97.5 0.0012 2.6E-08 69.4 12.5 34 57-90 237-270 (561)
305 PF13434 K_oxygenase: L-lysine 97.5 0.0005 1.1E-08 67.6 9.1 37 57-93 2-39 (341)
306 PRK13984 putative oxidoreducta 97.5 0.00018 3.9E-09 77.2 6.4 43 55-97 281-323 (604)
307 TIGR03862 flavo_PP4765 unchara 97.4 0.00072 1.6E-08 66.9 9.8 62 275-340 79-141 (376)
308 PRK07846 mycothione reductase; 97.4 0.0011 2.4E-08 68.2 11.6 49 295-345 219-267 (451)
309 PRK08255 salicylyl-CoA 5-hydro 97.4 0.00015 3.3E-09 79.5 5.1 34 58-91 1-36 (765)
310 TIGR01438 TGR thioredoxin and 97.4 0.00018 3.9E-09 74.7 5.1 61 282-344 220-283 (484)
311 KOG1800 Ferredoxin/adrenodoxin 97.4 0.00026 5.7E-09 67.4 5.4 42 57-98 20-63 (468)
312 KOG0404 Thioredoxin reductase 97.4 0.0011 2.5E-08 58.4 8.8 61 283-348 71-132 (322)
313 KOG2311 NAD/FAD-utilizing prot 97.4 0.0015 3.3E-08 64.1 10.4 40 55-94 26-66 (679)
314 PRK08010 pyridine nucleotide-d 97.3 0.002 4.3E-08 66.4 12.1 34 58-91 159-192 (441)
315 PRK06327 dihydrolipoamide dehy 97.3 0.002 4.4E-08 66.9 12.2 34 57-90 183-216 (475)
316 PRK06912 acoL dihydrolipoamide 97.3 0.0021 4.5E-08 66.5 12.1 34 58-91 171-204 (458)
317 COG3634 AhpF Alkyl hydroperoxi 97.3 0.0006 1.3E-08 64.2 6.3 66 283-348 267-333 (520)
318 TIGR03452 mycothione_red mycot 97.2 0.003 6.5E-08 65.2 11.7 49 295-345 222-270 (452)
319 PTZ00052 thioredoxin reductase 97.2 0.003 6.5E-08 66.0 11.1 32 58-89 183-214 (499)
320 COG2303 BetA Choline dehydroge 97.1 0.00043 9.2E-09 72.7 4.6 36 55-90 5-40 (542)
321 PRK14727 putative mercuric red 97.1 0.0034 7.4E-08 65.3 11.2 53 289-344 235-287 (479)
322 PLN02546 glutathione reductase 97.1 0.0053 1.1E-07 64.7 12.5 35 57-91 252-286 (558)
323 PRK14694 putative mercuric red 97.1 0.0047 1E-07 64.1 12.0 32 58-89 179-210 (468)
324 PRK13748 putative mercuric red 97.1 0.0049 1.1E-07 65.7 12.3 33 57-89 270-302 (561)
325 PRK06467 dihydrolipoamide dehy 97.1 0.0047 1E-07 64.1 11.8 33 58-90 175-207 (471)
326 PTZ00153 lipoamide dehydrogena 97.1 0.0052 1.1E-07 65.8 11.9 34 58-91 313-346 (659)
327 TIGR01438 TGR thioredoxin and 97.0 0.0063 1.4E-07 63.3 11.3 32 58-89 181-212 (484)
328 PRK07846 mycothione reductase; 96.9 0.00093 2E-08 68.9 4.5 37 57-96 1-37 (451)
329 PRK09754 phenylpropionate diox 96.9 0.0012 2.5E-08 67.1 5.1 35 57-91 3-39 (396)
330 PLN02785 Protein HOTHEAD 96.8 0.0014 3.1E-08 69.3 5.3 36 54-90 52-87 (587)
331 COG1249 Lpd Pyruvate/2-oxoglut 96.4 0.0067 1.5E-07 61.7 6.3 39 56-94 172-210 (454)
332 COG1206 Gid NAD(FAD)-utilizing 96.3 0.004 8.7E-08 58.5 3.9 37 57-93 3-39 (439)
333 KOG4716 Thioredoxin reductase 96.3 0.0044 9.5E-08 58.3 3.9 62 281-343 237-303 (503)
334 PF13434 K_oxygenase: L-lysine 96.2 0.032 6.9E-07 55.0 10.2 36 54-89 187-224 (341)
335 PRK04965 NADH:flavorubredoxin 96.2 0.006 1.3E-07 61.5 4.9 33 58-90 3-37 (377)
336 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.0073 1.6E-07 52.3 3.9 32 59-90 1-32 (157)
337 PF02737 3HCDH_N: 3-hydroxyacy 95.8 0.011 2.5E-07 52.3 4.4 32 59-90 1-32 (180)
338 PF03721 UDPG_MGDP_dh_N: UDP-g 95.8 0.0096 2.1E-07 53.0 3.7 34 58-91 1-34 (185)
339 COG3486 IucD Lysine/ornithine 95.7 0.078 1.7E-06 51.8 9.9 39 55-93 3-42 (436)
340 KOG1238 Glucose dehydrogenase/ 95.7 0.011 2.5E-07 61.0 4.2 39 54-92 54-93 (623)
341 COG1251 NirB NAD(P)H-nitrite r 95.6 0.024 5.3E-07 59.3 6.4 53 286-340 191-243 (793)
342 PRK06370 mercuric reductase; V 95.5 0.03 6.4E-07 58.2 6.7 38 57-94 171-208 (463)
343 PF02558 ApbA: Ketopantoate re 95.5 0.016 3.6E-07 49.7 4.0 31 60-90 1-31 (151)
344 KOG3855 Monooxygenase involved 95.5 0.016 3.5E-07 56.4 4.2 36 55-90 34-73 (481)
345 PRK01438 murD UDP-N-acetylmura 95.4 0.02 4.4E-07 59.6 5.2 34 57-90 16-49 (480)
346 PRK07251 pyridine nucleotide-d 95.2 0.029 6.3E-07 57.8 5.5 36 57-92 157-192 (438)
347 PRK05249 soluble pyridine nucl 95.2 0.038 8.2E-07 57.4 6.4 37 57-93 175-211 (461)
348 PRK06129 3-hydroxyacyl-CoA deh 95.2 0.024 5.3E-07 55.2 4.5 33 58-90 3-35 (308)
349 PRK02705 murD UDP-N-acetylmura 95.1 0.024 5.2E-07 58.7 4.7 34 59-92 2-35 (459)
350 COG0569 TrkA K+ transport syst 95.1 0.029 6.3E-07 51.7 4.7 67 58-133 1-67 (225)
351 PRK07066 3-hydroxybutyryl-CoA 95.0 0.041 8.9E-07 53.4 5.5 34 57-90 7-40 (321)
352 TIGR01350 lipoamide_DH dihydro 94.9 0.04 8.7E-07 57.2 5.6 37 57-93 170-206 (461)
353 TIGR01421 gluta_reduc_1 glutat 94.9 0.039 8.5E-07 56.9 5.4 37 57-93 166-202 (450)
354 PRK06249 2-dehydropantoate 2-r 94.8 0.051 1.1E-06 53.1 5.6 35 56-90 4-38 (313)
355 PRK06115 dihydrolipoamide dehy 94.7 0.048 1E-06 56.6 5.6 35 57-91 174-208 (466)
356 PRK12831 putative oxidoreducta 94.7 0.085 1.8E-06 54.6 7.3 34 56-89 280-313 (464)
357 COG1004 Ugd Predicted UDP-gluc 94.7 0.037 8E-07 53.9 4.3 34 58-91 1-34 (414)
358 TIGR01316 gltA glutamate synth 94.7 0.093 2E-06 54.1 7.5 35 56-90 271-305 (449)
359 PRK13512 coenzyme A disulfide 94.6 0.042 9.1E-07 56.5 4.9 36 58-93 149-184 (438)
360 PRK05708 2-dehydropantoate 2-r 94.6 0.053 1.2E-06 52.7 5.2 33 57-89 2-34 (305)
361 PRK09564 coenzyme A disulfide 94.6 0.068 1.5E-06 55.2 6.2 36 57-92 149-184 (444)
362 PF13738 Pyr_redox_3: Pyridine 94.5 0.044 9.6E-07 49.6 4.2 35 56-90 166-200 (203)
363 PRK07818 dihydrolipoamide dehy 94.5 0.054 1.2E-06 56.2 5.3 35 58-92 173-207 (466)
364 PF01488 Shikimate_DH: Shikima 94.5 0.087 1.9E-06 44.2 5.6 34 56-89 11-45 (135)
365 TIGR01816 sdhA_forward succina 94.4 0.1 2.2E-06 55.5 7.3 58 282-340 119-181 (565)
366 PF01262 AlaDh_PNT_C: Alanine 94.4 0.067 1.4E-06 46.9 5.0 34 56-89 19-52 (168)
367 PRK07819 3-hydroxybutyryl-CoA 94.4 0.059 1.3E-06 51.8 5.0 34 58-91 6-39 (286)
368 KOG2755 Oxidoreductase [Genera 94.4 0.026 5.6E-07 51.5 2.3 35 60-94 2-38 (334)
369 PRK08293 3-hydroxybutyryl-CoA 94.4 0.054 1.2E-06 52.2 4.7 33 58-90 4-36 (287)
370 PRK09260 3-hydroxybutyryl-CoA 94.3 0.055 1.2E-06 52.2 4.7 32 59-90 3-34 (288)
371 PRK06292 dihydrolipoamide dehy 94.3 0.064 1.4E-06 55.6 5.5 36 57-92 169-204 (460)
372 PRK14989 nitrite reductase sub 94.2 0.079 1.7E-06 58.8 6.0 37 57-93 145-181 (847)
373 PF00070 Pyr_redox: Pyridine n 94.1 0.11 2.4E-06 39.0 4.9 41 282-324 40-80 (80)
374 TIGR01470 cysG_Nterm siroheme 94.0 0.09 2E-06 47.6 5.0 34 57-90 9-42 (205)
375 PRK14106 murD UDP-N-acetylmura 93.9 0.079 1.7E-06 54.8 5.1 34 57-90 5-38 (450)
376 PRK06522 2-dehydropantoate 2-r 93.9 0.077 1.7E-06 51.6 4.8 32 58-89 1-32 (304)
377 PRK07530 3-hydroxybutyryl-CoA 93.9 0.08 1.7E-06 51.2 4.8 33 58-90 5-37 (292)
378 COG1252 Ndh NADH dehydrogenase 93.8 0.05 1.1E-06 54.2 3.2 60 56-132 154-226 (405)
379 TIGR03140 AhpF alkyl hydropero 93.8 0.083 1.8E-06 55.5 5.1 34 57-90 352-385 (515)
380 PRK08229 2-dehydropantoate 2-r 93.8 0.083 1.8E-06 52.4 4.8 32 58-89 3-34 (341)
381 PRK06718 precorrin-2 dehydroge 93.8 0.11 2.4E-06 47.0 5.1 34 56-89 9-42 (202)
382 cd01080 NAD_bind_m-THF_DH_Cycl 93.8 0.11 2.4E-06 45.2 5.0 34 56-89 43-77 (168)
383 PRK12921 2-dehydropantoate 2-r 93.7 0.088 1.9E-06 51.2 4.8 31 58-88 1-31 (305)
384 PRK06719 precorrin-2 dehydroge 93.7 0.12 2.6E-06 44.6 5.0 32 56-87 12-43 (157)
385 PF13241 NAD_binding_7: Putati 93.6 0.064 1.4E-06 42.6 2.9 35 56-90 6-40 (103)
386 PRK06035 3-hydroxyacyl-CoA deh 93.6 0.089 1.9E-06 50.8 4.5 33 58-90 4-36 (291)
387 TIGR02354 thiF_fam2 thiamine b 93.5 0.12 2.5E-06 46.7 4.7 36 56-91 20-56 (200)
388 PRK04148 hypothetical protein; 93.4 0.091 2E-06 43.5 3.6 34 57-91 17-50 (134)
389 PRK05808 3-hydroxybutyryl-CoA 93.3 0.11 2.3E-06 50.0 4.6 33 58-90 4-36 (282)
390 PRK10262 thioredoxin reductase 93.3 0.13 2.8E-06 50.5 5.1 35 56-90 145-179 (321)
391 cd05292 LDH_2 A subgroup of L- 93.3 0.12 2.7E-06 50.2 4.9 33 58-90 1-35 (308)
392 PRK12778 putative bifunctional 93.3 0.22 4.8E-06 55.0 7.5 34 56-89 569-603 (752)
393 PRK06116 glutathione reductase 93.2 0.13 2.7E-06 53.3 5.3 36 57-92 167-202 (450)
394 KOG3851 Sulfide:quinone oxidor 93.2 0.19 4.1E-06 47.4 5.7 38 54-91 36-75 (446)
395 PRK14619 NAD(P)H-dependent gly 93.2 0.14 3.1E-06 49.8 5.4 35 56-90 3-37 (308)
396 TIGR03143 AhpF_homolog putativ 93.2 0.12 2.5E-06 54.9 5.0 37 56-92 142-178 (555)
397 TIGR03026 NDP-sugDHase nucleot 93.0 0.11 2.4E-06 52.9 4.4 34 58-91 1-34 (411)
398 PRK15317 alkyl hydroperoxide r 92.9 0.14 3.1E-06 53.9 5.1 35 56-90 350-384 (517)
399 PRK11064 wecC UDP-N-acetyl-D-m 92.9 0.12 2.7E-06 52.5 4.5 34 58-91 4-37 (415)
400 TIGR01763 MalateDH_bact malate 92.9 0.17 3.7E-06 49.0 5.3 32 58-89 2-34 (305)
401 COG0686 Ald Alanine dehydrogen 92.8 0.12 2.6E-06 48.6 3.8 35 55-89 166-200 (371)
402 KOG2304 3-hydroxyacyl-CoA dehy 92.8 0.13 2.8E-06 45.9 3.8 38 54-91 8-45 (298)
403 PRK14620 NAD(P)H-dependent gly 92.8 0.14 3E-06 50.4 4.6 33 58-90 1-33 (326)
404 PRK14618 NAD(P)H-dependent gly 92.8 0.15 3.3E-06 50.1 4.9 34 57-90 4-37 (328)
405 PRK12770 putative glutamate sy 92.7 0.17 3.7E-06 50.4 5.2 33 57-89 172-205 (352)
406 PRK06130 3-hydroxybutyryl-CoA 92.7 0.17 3.6E-06 49.4 5.0 34 57-90 4-37 (311)
407 PTZ00318 NADH dehydrogenase-li 92.7 0.16 3.5E-06 52.0 5.1 36 58-93 174-223 (424)
408 PF00899 ThiF: ThiF family; I 92.7 0.18 3.9E-06 42.3 4.5 37 57-93 2-39 (135)
409 TIGR00518 alaDH alanine dehydr 92.6 0.18 3.8E-06 50.4 5.1 35 56-90 166-200 (370)
410 PLN02545 3-hydroxybutyryl-CoA 92.6 0.17 3.7E-06 49.0 4.9 33 58-90 5-37 (295)
411 PRK00094 gpsA NAD(P)H-dependen 92.5 0.16 3.6E-06 49.8 4.7 33 58-90 2-34 (325)
412 TIGR01292 TRX_reduct thioredox 92.5 0.19 4.1E-06 48.6 5.1 34 56-89 140-173 (300)
413 PRK15116 sulfur acceptor prote 92.4 0.21 4.5E-06 47.1 4.9 38 56-93 29-67 (268)
414 PF03446 NAD_binding_2: NAD bi 92.3 0.19 4.1E-06 43.8 4.3 33 58-90 2-34 (163)
415 COG1748 LYS9 Saccharopine dehy 92.2 0.2 4.3E-06 49.6 4.7 33 58-90 2-35 (389)
416 PF00056 Ldh_1_N: lactate/mala 92.1 0.29 6.4E-06 41.3 5.1 33 58-90 1-36 (141)
417 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.0 0.21 4.6E-06 51.9 5.0 36 56-91 4-39 (503)
418 PRK08268 3-hydroxy-acyl-CoA de 91.9 0.25 5.4E-06 51.5 5.3 35 57-91 7-41 (507)
419 PRK07417 arogenate dehydrogena 91.8 0.19 4.2E-06 48.1 4.2 32 59-90 2-33 (279)
420 PF02254 TrkA_N: TrkA-N domain 91.8 0.26 5.6E-06 40.0 4.3 32 60-91 1-32 (116)
421 COG0771 MurD UDP-N-acetylmuram 91.8 0.21 4.5E-06 50.5 4.4 36 57-92 7-42 (448)
422 PRK15057 UDP-glucose 6-dehydro 91.8 0.21 4.6E-06 50.1 4.5 33 58-91 1-33 (388)
423 PLN02353 probable UDP-glucose 91.7 0.22 4.9E-06 51.2 4.7 35 57-91 1-37 (473)
424 cd05311 NAD_bind_2_malic_enz N 91.7 0.29 6.3E-06 45.1 5.0 35 56-90 24-61 (226)
425 PRK07531 bifunctional 3-hydrox 91.5 0.23 5E-06 51.8 4.6 33 58-90 5-37 (495)
426 PRK09424 pntA NAD(P) transhydr 91.5 0.32 6.9E-06 50.3 5.5 35 55-89 163-197 (509)
427 cd05293 LDH_1 A subgroup of L- 91.4 0.33 7.1E-06 47.2 5.3 35 56-90 2-38 (312)
428 cd05191 NAD_bind_amino_acid_DH 91.4 0.43 9.3E-06 36.4 4.9 33 56-88 22-55 (86)
429 cd01075 NAD_bind_Leu_Phe_Val_D 91.4 0.35 7.5E-06 43.7 5.0 35 56-90 27-61 (200)
430 COG3634 AhpF Alkyl hydroperoxi 91.2 0.19 4.1E-06 47.9 3.2 35 56-90 353-387 (520)
431 PRK12549 shikimate 5-dehydroge 91.2 0.32 7E-06 46.6 4.9 35 56-90 126-161 (284)
432 TIGR01915 npdG NADPH-dependent 91.2 0.32 6.9E-06 44.7 4.7 32 58-89 1-33 (219)
433 COG1893 ApbA Ketopantoate redu 91.1 0.27 5.9E-06 47.6 4.4 33 58-90 1-33 (307)
434 PRK11749 dihydropyrimidine deh 91.1 0.32 7E-06 50.3 5.2 34 56-89 272-306 (457)
435 PLN02256 arogenate dehydrogena 91.0 0.76 1.6E-05 44.5 7.3 35 56-90 35-69 (304)
436 PRK01710 murD UDP-N-acetylmura 91.0 0.31 6.6E-06 50.5 4.9 33 58-90 15-47 (458)
437 PRK04690 murD UDP-N-acetylmura 90.9 0.3 6.5E-06 50.6 4.8 35 57-91 8-42 (468)
438 PRK12475 thiamine/molybdopteri 90.9 0.33 7.2E-06 47.7 4.8 36 56-91 23-59 (338)
439 PRK08644 thiamine biosynthesis 90.8 0.38 8.3E-06 43.8 4.8 36 56-91 27-63 (212)
440 PRK12779 putative bifunctional 90.7 0.63 1.4E-05 52.4 7.3 35 56-90 446-480 (944)
441 PRK07688 thiamine/molybdopteri 90.6 0.38 8.2E-06 47.3 4.9 36 56-91 23-59 (339)
442 cd00401 AdoHcyase S-adenosyl-L 90.5 0.41 8.9E-06 48.2 5.1 36 56-91 201-236 (413)
443 PRK02472 murD UDP-N-acetylmura 90.5 0.35 7.7E-06 49.9 4.9 34 57-90 5-38 (447)
444 PRK03369 murD UDP-N-acetylmura 90.4 0.38 8.1E-06 50.2 5.0 33 57-89 12-44 (488)
445 PRK11730 fadB multifunctional 90.4 0.31 6.6E-06 53.3 4.4 34 58-91 314-347 (715)
446 TIGR02355 moeB molybdopterin s 90.4 0.42 9.1E-06 44.5 4.7 39 56-94 23-62 (240)
447 PRK06223 malate dehydrogenase; 90.3 0.45 9.8E-06 46.3 5.2 33 58-90 3-36 (307)
448 PRK04308 murD UDP-N-acetylmura 90.3 0.42 9E-06 49.3 5.2 35 57-91 5-39 (445)
449 PRK08306 dipicolinate synthase 90.2 0.47 1E-05 45.8 5.1 35 56-90 151-185 (296)
450 COG1250 FadB 3-hydroxyacyl-CoA 90.1 0.38 8.1E-06 46.1 4.3 33 57-89 3-35 (307)
451 TIGR02437 FadB fatty oxidation 90.1 0.42 9.1E-06 52.2 5.1 36 56-91 312-347 (714)
452 TIGR02356 adenyl_thiF thiazole 90.1 0.49 1.1E-05 42.8 4.8 36 56-91 20-56 (202)
453 cd01487 E1_ThiF_like E1_ThiF_l 90.1 0.49 1.1E-05 41.6 4.7 33 59-91 1-34 (174)
454 cd01483 E1_enzyme_family Super 90.0 0.48 1E-05 40.1 4.5 35 59-93 1-36 (143)
455 KOG1335 Dihydrolipoamide dehyd 90.0 0.19 4.1E-06 48.7 2.0 40 56-95 210-249 (506)
456 PRK05690 molybdopterin biosynt 90.0 0.5 1.1E-05 44.2 4.9 36 56-91 31-67 (245)
457 PTZ00082 L-lactate dehydrogena 89.9 0.53 1.1E-05 46.0 5.2 34 58-91 7-41 (321)
458 KOG2495 NADH-dehydrogenase (ub 89.9 0.15 3.2E-06 50.1 1.4 34 59-92 220-267 (491)
459 cd05291 HicDH_like L-2-hydroxy 89.9 0.48 1E-05 46.1 4.9 32 59-90 2-35 (306)
460 cd01078 NAD_bind_H4MPT_DH NADP 89.9 0.56 1.2E-05 42.2 5.0 34 56-89 27-61 (194)
461 PRK12810 gltD glutamate syntha 89.8 0.97 2.1E-05 47.0 7.4 39 484-524 428-466 (471)
462 TIGR02853 spore_dpaA dipicolin 89.7 0.49 1.1E-05 45.4 4.8 35 56-90 150-184 (287)
463 KOG1346 Programmed cell death 89.6 0.31 6.7E-06 47.7 3.2 65 281-347 392-456 (659)
464 PRK00421 murC UDP-N-acetylmura 89.5 0.45 9.8E-06 49.3 4.7 36 56-91 6-42 (461)
465 TIGR00561 pntA NAD(P) transhyd 89.5 0.5 1.1E-05 48.8 4.8 34 56-89 163-196 (511)
466 cd00757 ThiF_MoeB_HesA_family 89.5 0.55 1.2E-05 43.4 4.7 36 56-91 20-56 (228)
467 PRK08328 hypothetical protein; 89.4 0.54 1.2E-05 43.5 4.7 36 56-91 26-62 (231)
468 PF13478 XdhC_C: XdhC Rossmann 89.4 0.44 9.5E-06 39.9 3.6 32 60-91 1-32 (136)
469 PRK12548 shikimate 5-dehydroge 89.2 0.68 1.5E-05 44.6 5.4 35 56-90 125-160 (289)
470 PRK00141 murD UDP-N-acetylmura 89.2 0.53 1.2E-05 48.9 4.9 33 57-89 15-47 (473)
471 TIGR02441 fa_ox_alpha_mit fatt 89.1 0.44 9.5E-06 52.2 4.4 35 57-91 335-369 (737)
472 PRK09496 trkA potassium transp 89.1 0.51 1.1E-05 48.9 4.7 34 58-91 1-34 (453)
473 PF10727 Rossmann-like: Rossma 89.0 0.32 6.9E-06 40.1 2.5 36 54-89 7-42 (127)
474 TIGR01505 tartro_sem_red 2-hyd 89.0 0.43 9.2E-06 46.1 3.8 32 59-90 1-32 (291)
475 PLN02172 flavin-containing mon 88.9 0.5 1.1E-05 48.8 4.4 34 56-89 203-236 (461)
476 PRK11199 tyrA bifunctional cho 88.8 0.64 1.4E-05 46.6 5.0 36 55-90 96-132 (374)
477 TIGR00507 aroE shikimate 5-deh 88.8 0.67 1.5E-05 44.1 5.0 34 56-89 116-149 (270)
478 cd01065 NAD_bind_Shikimate_DH 88.7 0.8 1.7E-05 39.3 5.0 35 56-90 18-53 (155)
479 PTZ00142 6-phosphogluconate de 88.6 0.49 1.1E-05 48.7 4.1 34 58-91 2-35 (470)
480 cd01339 LDH-like_MDH L-lactate 88.5 0.54 1.2E-05 45.6 4.1 31 60-90 1-32 (300)
481 TIGR01317 GOGAT_sm_gam glutama 88.4 1.5 3.2E-05 45.7 7.6 39 484-524 442-480 (485)
482 PRK00066 ldh L-lactate dehydro 88.4 0.8 1.7E-05 44.6 5.2 35 56-90 5-41 (315)
483 PRK15461 NADH-dependent gamma- 88.2 0.63 1.4E-05 45.0 4.4 32 59-90 3-34 (296)
484 PRK01368 murD UDP-N-acetylmura 88.2 0.57 1.2E-05 48.3 4.3 32 57-89 6-37 (454)
485 PRK00258 aroE shikimate 5-dehy 88.2 0.8 1.7E-05 43.8 5.0 35 56-90 122-157 (278)
486 TIGR00872 gnd_rel 6-phosphoglu 88.1 0.64 1.4E-05 45.0 4.4 33 58-90 1-33 (298)
487 COG1251 NirB NAD(P)H-nitrite r 88.1 0.81 1.8E-05 48.5 5.2 46 293-342 70-115 (793)
488 PRK11154 fadJ multifunctional 88.1 0.98 2.1E-05 49.4 6.2 34 57-90 309-343 (708)
489 PF00670 AdoHcyase_NAD: S-aden 88.0 0.77 1.7E-05 39.4 4.2 36 56-91 22-57 (162)
490 TIGR03736 PRTRC_ThiF PRTRC sys 88.0 0.76 1.7E-05 42.6 4.6 36 55-90 9-55 (244)
491 TIGR02440 FadJ fatty oxidation 88.0 0.6 1.3E-05 50.9 4.5 35 57-91 304-339 (699)
492 cd01485 E1-1_like Ubiquitin ac 87.9 0.74 1.6E-05 41.5 4.4 36 56-91 18-54 (198)
493 TIGR02964 xanthine_xdhC xanthi 87.9 0.89 1.9E-05 42.4 5.0 37 55-91 98-134 (246)
494 PRK05562 precorrin-2 dehydroge 87.9 0.91 2E-05 41.4 4.9 34 56-89 24-57 (223)
495 TIGR01809 Shik-DH-AROM shikima 87.9 0.84 1.8E-05 43.7 4.9 34 56-89 124-158 (282)
496 PLN02695 GDP-D-mannose-3',5'-e 87.9 1.1 2.4E-05 45.0 6.0 36 54-89 18-54 (370)
497 cd00755 YgdL_like Family of ac 87.8 0.77 1.7E-05 42.4 4.5 41 56-96 10-51 (231)
498 cd05290 LDH_3 A subgroup of L- 87.8 0.73 1.6E-05 44.6 4.6 31 59-89 1-33 (307)
499 PRK02006 murD UDP-N-acetylmura 87.8 0.7 1.5E-05 48.4 4.8 34 57-90 7-40 (498)
500 TIGR00936 ahcY adenosylhomocys 87.7 0.84 1.8E-05 45.8 5.0 35 56-90 194-228 (406)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=8.8e-58 Score=476.00 Aligned_cols=513 Identities=88% Similarity=1.417 Sum_probs=424.9
Q ss_pred CCCCceeeecCCCCCCccccchhhhhhhhccCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcc
Q 009198 16 GFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (540)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~ 95 (540)
+.+|..+.|+++|.+.++.+.+|.............+......+|+|||||++||+||++|++.|++|+|+|+++.+||+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 52 GRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCceEEecCCCCCchhhHHHHHhhhhhccccccCCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 56789999999999999999999876655444444455556789999999999999999999999999999999999999
Q ss_pred eeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcC
Q 009198 96 IAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN 175 (540)
Q Consensus 96 ~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (540)
+.++...+|+.+|.|.|++.+.++++.++++++|++....+....+.+.++...+.+..+.++...|.....+..++...
T Consensus 132 ~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~ 211 (567)
T PLN02612 132 VAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNN 211 (567)
T ss_pred ceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcC
Confidence 99987557899999999999999999999999999877777666666655555555555555554566666677777666
Q ss_pred CCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHH
Q 009198 176 EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQ 255 (540)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (540)
..+.+.++++....+.+........+...++.++.+|+++. +.+..+.++++.++....++.+++++|+.
T Consensus 212 ~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~----------~~~~~~~~~~~~~l~~~~~~~~p~~~S~~ 281 (567)
T PLN02612 212 EMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQ----------GVPDRVNDEVFIAMSKALNFINPDELSMQ 281 (567)
T ss_pred ccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhc----------CCCHHHHHHHHHHHHHHhcCCCHHHhhHH
Confidence 67778888776655544333333344556789999999998 88888889999999988888999999999
Q ss_pred HHHHHHHHHhhhccCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEc
Q 009198 256 CILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 335 (540)
Q Consensus 256 ~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A 335 (540)
.....+..++....++...+..|+.+..+++.|.+.+++.|++|+++++|++|+.++++.+++|.+.+|+++.||+||+|
T Consensus 282 ~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a 361 (567)
T PLN02612 282 CILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSA 361 (567)
T ss_pred HHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEEC
Confidence 88877777666666777888888755789999999999999999999999999986677677788888988999999999
Q ss_pred cCHHHHhhcCCCCchhhHHHHHHhccCCcCeEEEEEEeccccccccCcceeecCCceeEEeccCcccccccCCCccEEEE
Q 009198 336 TPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLEL 415 (540)
Q Consensus 336 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 415 (540)
+|+..+..|+++...+..+.+.++++.+.++++++++|++++|...+++++...+..+.+.+++..+..|.+++.+++.+
T Consensus 362 ~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~ 441 (567)
T PLN02612 362 TPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLEL 441 (567)
T ss_pred CCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCceeehhhhhcchhhcCCCCeEEEE
Confidence 99999999988755455667777788888999999999999987777777776666666667776666777777777777
Q ss_pred EeeccccccCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEeccc
Q 009198 416 VFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDY 495 (540)
Q Consensus 416 ~~~~~~~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~ 495 (540)
++.+..+|..++++++++.++++|+++||..+.++....++..+.+..+|.+.|...|+...+++.+++|++|||||||+
T Consensus 442 ~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~ 521 (567)
T PLN02612 442 VFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDY 521 (567)
T ss_pred EEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecc
Confidence 77777899999999999999999999999764444345677888899999999998888777888889999999999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHhHHHhhcchhhhhhcC
Q 009198 496 TKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 538 (540)
Q Consensus 496 ~~~~~~~~~~ga~~sg~~aA~~v~~~l~~~~~~~~~~~~~~~~ 538 (540)
+.++|+++|+||+.||++||++|+++++...++.+..++|++.
T Consensus 522 t~~~~~~smeGAv~SG~~AA~~I~~~~~~~~~~~~~~~~~~~~ 564 (567)
T PLN02612 522 TKQKYLASMEGAVLSGKLCAQSIVQDYELLAARGPRKLSEATV 564 (567)
T ss_pred eeCCchhhHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 9999999999999999999999999998878888888887763
No 2
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=3.4e-46 Score=384.23 Aligned_cols=447 Identities=74% Similarity=1.229 Sum_probs=339.5
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCccccccc
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 138 (540)
+|+|||||++||+||+.|+++|++|+|+|+++++||++.++...+|+.+|.|.|++.+.++++.++++++|++....+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 58999999999999999999999999999999999999987545789999999999999999999999999987655555
Q ss_pred ccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHHHhCC
Q 009198 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQ 218 (540)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (540)
....+......+....+.++. .+.....+..++.....+.+.++++....+.+........+...++.++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-- 157 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQ-- 157 (453)
T ss_pred CceEEecCCCCcceeeccCCC-CCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHc--
Confidence 444444333333333333332 34444444455544445667777666554433222222333455789999999998
Q ss_pred CchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCccchhHHHHHHHHcCcE
Q 009198 219 PSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGE 298 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~ 298 (540)
+++..+.+.++.++...+++.+++++|+......+..++....+....+..|+.+..+++.|.+.+++.|++
T Consensus 158 --------~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~ 229 (453)
T TIGR02731 158 --------GVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGE 229 (453)
T ss_pred --------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCE
Confidence 888888899999999998888999999988887776656545565555666654678999999999999999
Q ss_pred EEeCcceeEEEEccCCcEEEEEEcCCc-----EEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhccCCcCeEEEEEEe
Q 009198 299 VRLNSRVQKIELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWF 373 (540)
Q Consensus 299 i~~~t~V~~I~~~~~~~~~~V~~~~G~-----~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 373 (540)
|++|++|++|+..+++++++|++.+|+ ++.||.||+|+|+..+.+||+.......+.+.+.++.+.++.++++.|
T Consensus 230 i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 309 (453)
T TIGR02731 230 VRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWF 309 (453)
T ss_pred EeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEE
Confidence 999999999987567777788887765 799999999999999999997643224566777777888999999999
Q ss_pred ccccccccCcceeecCCceeEEeccCcccccccCCCccEEEEEeeccccccCCChHHHHHHHHHHHHHhCCCcccccccc
Q 009198 374 DRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSK 453 (540)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~ 453 (540)
+++++... .+++...+......+.+.....+.+++.+++.+++....+|..+++|++++.++++|.++||...... ..
T Consensus 310 ~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~-~~ 387 (453)
T TIGR02731 310 DRKLTTVD-HLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKAD-SP 387 (453)
T ss_pred ccccCCCC-ceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCC-CC
Confidence 99987543 34444444333332333333344555567777666556677788999999999999999998521100 12
Q ss_pred ceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHH
Q 009198 454 AKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 518 (540)
Q Consensus 454 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v 518 (540)
..++.+.|.++|++.|...|+.....+.+++|++||||||++++..|+++||||+.||++||++|
T Consensus 388 ~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 388 AKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred ceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 35778889999999887777765667778899999999999999999999999999999999987
No 3
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=2e-42 Score=354.39 Aligned_cols=443 Identities=37% Similarity=0.677 Sum_probs=323.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCccccccc
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 138 (540)
+|+|||||++||++|+.|++.|++|+|+|+++.+||+++++...+|+.+|+|.|++.+.++++.++++++|+...+.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 58999999999999999999999999999999999999997656799999999999999999999999999987655443
Q ss_pred ccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchh--hhHhcC---c---ccccccCCCCHH
Q 009198 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PAIIGG---Q---AYVEAQDGLTVQ 210 (540)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~---~~~~~~~~~s~~ 210 (540)
....+. ...+....+.+....+.++.....+++ ...+.+.++++...... +..... . ..+...++.++.
T Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~l~-~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 81 HTHTFV--NKGGDIGELDFRFATGAPFNGLKAFFT-TSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ceeEEE--cCCCcccccccCCCCCCchhhhHHHhc-CCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 332221 111222222222223334344445554 45677888776554431 211100 0 122345679999
Q ss_pred HHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCccchhHHHH
Q 009198 211 EWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVE 290 (540)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~ 290 (540)
+|++++ +.+....+.++++++....+.+++++|+......+..+.....++...++.|+....+.+.|.+
T Consensus 158 ~~l~~~----------~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~ 227 (474)
T TIGR02732 158 EWFLSH----------GGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILE 227 (474)
T ss_pred HHHHHc----------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHH
Confidence 999999 7777788999999999999999999999888765554444455667788887733347777999
Q ss_pred HHHHcCcEEEeCcceeEEEEcc--CC--cEEEEEEcCC---cEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhccCC
Q 009198 291 HIQSLGGEVRLNSRVQKIELND--DG--TVKNFLLTNG---NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVG 363 (540)
Q Consensus 291 ~l~~~G~~i~~~t~V~~I~~~~--~~--~~~~V~~~~G---~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 363 (540)
.++++|++|+++++|++|+.++ ++ ++++|++.+| +++.||+||+|+|++.+..|+++..........+.++.+
T Consensus 228 ~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~ 307 (474)
T TIGR02732 228 YIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDA 307 (474)
T ss_pred HHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCC
Confidence 9999999999999999998743 23 2667777654 468999999999999999999875433346678888888
Q ss_pred cCeEEEEEEecccccccc--------------CcceeecCCceeEEeccCcccc-cccCCCc-cEEEEEeeccccccCCC
Q 009198 364 VPVINIHIWFDRKLKNTY--------------DHLLFSRSSLLSVYADMSLTCK-EYYNPNQ-SMLELVFAPAEEWISCS 427 (540)
Q Consensus 364 ~~~~~i~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 427 (540)
.++..++++|++++.... +++.+........+.+.+...+ .|.+.+. .++..+......+.+++
T Consensus 308 ~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 387 (474)
T TIGR02732 308 VPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPES 387 (474)
T ss_pred CCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCC
Confidence 999999999998763321 1111111111111223221112 2433333 33555555556677889
Q ss_pred hHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHH
Q 009198 428 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGA 507 (540)
Q Consensus 428 ~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga 507 (540)
+++++++++++|.++||.... ..+....+.+.|++.|...|++...+|..+++.+|||+|||++..+|+.+||||
T Consensus 388 ~~~l~~~~~~~L~~~~p~~~~-----~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egA 462 (474)
T TIGR02732 388 NEEIAKRVDKQVRALFPSSKN-----LKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGA 462 (474)
T ss_pred HHHHHHHHHHHHHHhCccccC-----CceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHH
Confidence 999999999999999996321 246666788999999999999888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 009198 508 VLSGKLCAQAIV 519 (540)
Q Consensus 508 ~~sg~~aA~~v~ 519 (540)
+.||++||+.|+
T Consensus 463 v~sG~~aA~~i~ 474 (474)
T TIGR02732 463 TLSGRQAAAAIL 474 (474)
T ss_pred HHHHHHHHHHhC
Confidence 999999999874
No 4
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=6.1e-42 Score=352.07 Aligned_cols=455 Identities=34% Similarity=0.610 Sum_probs=335.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcccc
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 135 (540)
..++|+|||||++||++|+.|.+.|++|+|+|+++.+||.++++....|+.+|+|.|++.+.++++.++++++|++..+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 34699999999999999999999999999999999999999988655789999999999999999999999999987654
Q ss_pred cccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhch--hhhHhc------CcccccccCCC
Q 009198 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL--LPAIIG------GQAYVEAQDGL 207 (540)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~ 207 (540)
+......+. ...+....+.+.-..+..+..+..+++ ...+.+.++++....+ .+.... ....+...++.
T Consensus 154 ~~~~~~~~~--~~~g~~~~~~~~~p~~~pl~~~~~~l~-~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~ 230 (569)
T PLN02487 154 VKDHTHTFV--NKGGDVGELDFRFPVGAPLHGIKAFLT-TNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDI 230 (569)
T ss_pred ccccceeEE--ecCCEEeeeccCCCCCchhhhHHHHHc-CCCCCHHHHHhhcccccccchhhhccCccccccccccccCC
Confidence 433222121 111222111111112333333444444 3446666666654332 111110 01223456679
Q ss_pred CHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCc-cchh
Q 009198 208 TVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPE-RLCL 286 (540)
Q Consensus 208 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~-~l~~ 286 (540)
++.+|++++ +.+....+.++++++....+.+++++|+......+..+.....++...++.|+ +. .+++
T Consensus 231 sv~~~l~r~----------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg-~~~~l~~ 299 (569)
T PLN02487 231 SFSDWFTSH----------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGS-PDVRLSG 299 (569)
T ss_pred cHHHHHHHh----------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCC-chHHHHH
Confidence 999999999 77777899999999999999999999999888777543323334567888888 56 5999
Q ss_pred HHHHHHHHcCcEEEeCcceeEEEEcc--CC--cEEEEEE---cCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHh
Q 009198 287 PIVEHIQSLGGEVRLNSRVQKIELND--DG--TVKNFLL---TNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLE 359 (540)
Q Consensus 287 ~l~~~l~~~G~~i~~~t~V~~I~~~~--~~--~~~~V~~---~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~ 359 (540)
.+.+.++++|++|+++++|++|..+. ++ ++++|++ .+++.+.+|.||+|+|++.+.+|+|+.......+..+.
T Consensus 300 pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~ 379 (569)
T PLN02487 300 PIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIY 379 (569)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHh
Confidence 99999999999999999999999852 33 3778888 34456899999999999999999998644444577888
Q ss_pred ccCCcCeEEEEEEeccccccccC--------------cceeecCCceeEEeccCcccc-cc-cCCCccEEEEEeeccccc
Q 009198 360 KLVGVPVINIHIWFDRKLKNTYD--------------HLLFSRSSLLSVYADMSLTCK-EY-YNPNQSMLELVFAPAEEW 423 (540)
Q Consensus 360 ~~~~~~~~~i~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~s~~~~-~~-~~~~~~~~~~~~~~~~~~ 423 (540)
++.+.++..++++|++++..... ++.+........+++.+.... .+ .+.....+..++.+.+.+
T Consensus 380 ~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~ 459 (569)
T PLN02487 380 KLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPY 459 (569)
T ss_pred cCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccc
Confidence 88889999999999987643221 100111111112223211111 12 233345667777777788
Q ss_pred cCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCc
Q 009198 424 ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLAS 503 (540)
Q Consensus 424 ~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~ 503 (540)
..+++++++++++++|.+++|.... ..+....+.+.+.++|...|+....+|.++|+++|||+||||+.++|+.+
T Consensus 460 ~~~~~~ei~~~~~~~L~~~~p~~~~-----~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat 534 (569)
T PLN02487 460 MPLSNDKIVEKVHKQVLELFPSSRG-----LEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDS 534 (569)
T ss_pred cCCCHHHHHHHHHHHHHHhCccccc-----CceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcch
Confidence 8999999999999999999997422 23566788999999999999988888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhhc
Q 009198 504 MEGAVLSGKLCAQAIVQDYVLLAARG 529 (540)
Q Consensus 504 ~~ga~~sg~~aA~~v~~~l~~~~~~~ 529 (540)
||||+.||++||+.|++......+-+
T Consensus 535 ~EgAv~SG~~AA~~i~~~~~~~~~~~ 560 (569)
T PLN02487 535 MEGATLSGRQAAAYICEAGEELAGLR 560 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999886555443
No 5
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=319.17 Aligned_cols=425 Identities=25% Similarity=0.353 Sum_probs=294.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCccccccc
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 138 (540)
+|+|||||++||+||+.|+++|++|+|+|+++++||++.++. .+|+.+|.|+|++...++++.++++++|++....+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc
Confidence 589999999999999999999999999999999999999876 5689999999999888889999999999876554433
Q ss_pred ccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHHHhCC
Q 009198 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQ 218 (540)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (540)
....+...+ .... + .....+... ..+...++.+........ .........+..++.+|+.++
T Consensus 80 ~~~~~~~~~---~~~~--~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~l~~~-- 141 (434)
T PRK07233 80 TKTGYYVDG---KLYP--L--------GTPLELLRF-PHLSLIDKFRLGLLTLLA--RRIKDWRALDKVPAEEWLRRW-- 141 (434)
T ss_pred CceEEEECC---eEec--C--------CCHHHHHcC-CCCCHHHHHHhHHHHHhh--hhcccccccccccHHHHHHHh--
Confidence 322222211 1100 0 001111111 122233333222111111 001112344578999999987
Q ss_pred CchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhh-c--cCcceeeecCCCCccchhHHHHHHHHc
Q 009198 219 PSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE-K--HGSKMAFLDGNPPERLCLPIVEHIQSL 295 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~--~g~~~~~~~gg~~~~l~~~l~~~l~~~ 295 (540)
......+.++.+++...++.+++++++......+...... . ....+.++.|| ++.+++.|.+.+.+.
T Consensus 142 ---------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l~~~l~~~ 211 (434)
T PRK07233 142 ---------SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGG-FATLIDALAEAIEAR 211 (434)
T ss_pred ---------cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCC-HHHHHHHHHHHHHhc
Confidence 4566778889999888888999999987665544322111 0 12346678887 899999999999999
Q ss_pred CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhccCCcCeEEEEEEecc
Q 009198 296 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDR 375 (540)
Q Consensus 296 G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 375 (540)
|++|+++++|++|+. +++.++.+. .+|+++.||+||+|+|+..+..++++. +....+.++++.+.+..++++.+++
T Consensus 212 g~~v~~~~~V~~i~~-~~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~l~~~~ 287 (434)
T PRK07233 212 GGEIRLGTPVTSVVI-DGGGVTGVE-VDGEEEDFDAVISTAPPPILARLVPDL--PADVLARLRRIDYQGVVCMVLKLRR 287 (434)
T ss_pred CceEEeCCCeeEEEE-cCCceEEEE-eCCceEECCEEEECCCHHHHHhhcCCC--cHHHHhhhcccCccceEEEEEEecC
Confidence 999999999999997 445554444 566689999999999999999988653 3355677788888899999999998
Q ss_pred ccccccCcceeec--CCceeEEeccCcccccccCCCccEEE-EEeecc-ccccCCChHHHHHHHHHHHHHhCCCcccccc
Q 009198 376 KLKNTYDHLLFSR--SSLLSVYADMSLTCKEYYNPNQSMLE-LVFAPA-EEWISCSDSEIIDATMKELAKLFPDEISADQ 451 (540)
Q Consensus 376 ~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~ 451 (540)
+++..+ ...+.. .++..++ ..+..++...+++.+++. ..+... ..+..++++++++.++++|.+++|+..
T Consensus 288 ~~~~~~-~~~~~~~~~~~~~~~-~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~---- 361 (434)
T PRK07233 288 PLTDYY-WLNINDPGAPFGGVI-EHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFD---- 361 (434)
T ss_pred CCCCCc-eeeecCCCCCcceEE-EecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCC----
Confidence 864311 111111 2233222 233334444445555432 233332 223356789999999999999999631
Q ss_pred ccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Q 009198 452 SKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 523 (540)
Q Consensus 452 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~ 523 (540)
...++...+.+++++...+.++....++...++.+||||||+++...+.++|++|+.||++||++|+..++
T Consensus 362 -~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 362 -RDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred -hhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 12366777888888877777776666777778899999999954443346999999999999999988765
No 6
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.5e-37 Score=298.68 Aligned_cols=451 Identities=39% Similarity=0.600 Sum_probs=360.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcccccc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWK 137 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~ 137 (540)
++|+|+|||++||+||++|+++|++|+|+|+++++||.+.++...+|...|.|-|++.+.|.++.+++++++.+....+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred ccccee-ecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHHHh
Q 009198 138 EHSMIF-AMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (540)
Q Consensus 138 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (540)
+....+ ..+..++.+.++..+. .|........++... .+.+.++.+....+..........+.++++.++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~ 158 (485)
T COG3349 81 EHTKTFVGSGTRPGAIGRFARPD-APQPTNGLKAFLRLP-QLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK 158 (485)
T ss_pred hhhhhhcccCCCCCcccccccCC-CCCcchhhhhhhhcc-ccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence 766665 5666677766666665 445555555555543 5667777777665554433123446678899999999998
Q ss_pred CCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhc-cCcceeeecCCCCccchhHHHHHHHHc
Q 009198 217 VQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK-HGSKMAFLDGNPPERLCLPIVEHIQSL 295 (540)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~g~~~~~~~gg~~~~l~~~l~~~l~~~ 295 (540)
+......++.|.+......+..++..+.......+..++... .++......++..+.++..+.+.+.+.
T Consensus 159 ----------g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~ 228 (485)
T COG3349 159 ----------GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPER 228 (485)
T ss_pred ----------CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhcccc
Confidence 888888899999999888899999999877776666655444 455556667776789999999999999
Q ss_pred CcEEEeCcceeEEEEcc---CCcEEEEEEcCCc---EEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhccCCcCeEEE
Q 009198 296 GGEVRLNSRVQKIELND---DGTVKNFLLTNGN---VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINI 369 (540)
Q Consensus 296 G~~i~~~t~V~~I~~~~---~~~~~~V~~~~G~---~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i 369 (540)
|.+++.+.+|+.|.... +.+++++... +. .+.+..|+.+.+...+...+|..+.+....+.+..+...++.++
T Consensus 229 G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~ 307 (485)
T COG3349 229 GRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITL 307 (485)
T ss_pred CceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEE
Confidence 99999999999998643 4456666665 42 45667788888998889999998876677788888888899999
Q ss_pred EEEeccccccc--------cCcceeecCCceeEEeccCcccccccCCCc-cEEEEEeeccccccCCChHHHHHHHHHHHH
Q 009198 370 HIWFDRKLKNT--------YDHLLFSRSSLLSVYADMSLTCKEYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELA 440 (540)
Q Consensus 370 ~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~v~~~l~ 440 (540)
+++|+...+.. .++..++..+..+.+++....++.+..++. ..+.....+...|...+++++...+.+++.
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~ 387 (485)
T COG3349 308 HLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELY 387 (485)
T ss_pred EEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhh
Confidence 99999755321 223335555666666676666667777766 334445666677778889999999999999
Q ss_pred HhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHH
Q 009198 441 KLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 520 (540)
Q Consensus 441 ~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~ 520 (540)
..+|..... + +.......+.+++...|+....+|...+|++|++++||++...+.++||+|..||++||+.|++
T Consensus 388 ~~vP~~~~a-----~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~ 461 (485)
T COG3349 388 ELVPSLAEA-----K-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILD 461 (485)
T ss_pred hcCCchhcc-----c-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHH
Confidence 888874322 2 5667788999999999999999999999999999999999888889999999999999999998
Q ss_pred HHhHHHh
Q 009198 521 DYVLLAA 527 (540)
Q Consensus 521 ~l~~~~~ 527 (540)
.+.....
T Consensus 462 ~~~~~~~ 468 (485)
T COG3349 462 NLGHHAP 468 (485)
T ss_pred hhhhcCc
Confidence 8774443
No 7
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=8.4e-36 Score=307.95 Aligned_cols=423 Identities=16% Similarity=0.201 Sum_probs=281.3
Q ss_pred CeEEEECCChHHHHHHHHHHHC------CCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADA------GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~------g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 131 (540)
.+|+|||||++||+||+.|++. |++|+|||+++++||++.+.. .+|+.+|.|+|++...++++.++++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 4799999999999999999986 379999999999999999986 568999999999988888899999999998
Q ss_pred cccccccccceeecCCCCCCcccccCCC--CCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCH
Q 009198 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (540)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (540)
....+......+.+. .+....+.... .+|.. +..++. ...+.+..+++.+....... ....++.|+
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~p~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~sv 148 (463)
T PRK12416 81 EEMVYNETGISYIYS--DNTLHPIPSDTIFGIPMS---VESLFS-STLVSTKGKIVALKDFITKN------KEFTKDTSL 148 (463)
T ss_pred cceecCCCCceEEEE--CCeEEECCCCCeecCCCC---hHHhhc-CCcCCHHHHHHhhhhhccCC------CCCCCCCCH
Confidence 665433322221111 11111111110 11111 111121 22333344443333222110 011357899
Q ss_pred HHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHH-----------hh------hccCcc
Q 009198 210 QEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQ------EKHGSK 272 (540)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-----------~~------~~~g~~ 272 (540)
.+|+++. ++..+.+.++.++...+++.++++++....+..+..+ .. ...+..
T Consensus 149 ~~~l~~~-----------~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 217 (463)
T PRK12416 149 ALFLESF-----------LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKK 217 (463)
T ss_pred HHHHHHh-----------cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCc
Confidence 9999986 6777888899999988888888988875433322111 00 011223
Q ss_pred eeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhh
Q 009198 273 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEM 352 (540)
Q Consensus 273 ~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~ 352 (540)
+.++.|| ++.+++.|++.+.+ ++|+++++|++|+.+++ .+ .|++.+|+++.||+||+|+|...+..|++++.
T Consensus 218 ~~~~~gG-~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~-~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~--- 289 (463)
T PRK12416 218 FVSFKGG-LSTIIDRLEEVLTE--TVVKKGAVTTAVSKQGD-RY-EISFANHESIQADYVVLAAPHDIAETLLQSNE--- 289 (463)
T ss_pred eEeeCCC-HHHHHHHHHHhccc--ccEEcCCEEEEEEEcCC-EE-EEEECCCCEEEeCEEEECCCHHHHHhhcCCcc---
Confidence 5566777 88999999998854 68999999999998444 33 57888887899999999999999999987643
Q ss_pred HHHHHHhccCCcCeEEEEEEecccccc-ccCc--ceeecC-Cce-eEEeccCcccccccCCCccEEEEEee----ccccc
Q 009198 353 AYFKRLEKLVGVPVINIHIWFDRKLKN-TYDH--LLFSRS-SLL-SVYADMSLTCKEYYNPNQSMLELVFA----PAEEW 423 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~--~~~~~~-~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~----~~~~~ 423 (540)
..+.+.++.+.++.++++.|+++.|. +... ++.+.. +.. ......+..++...+++..++.+++. ...++
T Consensus 290 -l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 368 (463)
T PRK12416 290 -LNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETI 368 (463)
T ss_pred -hhHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhh
Confidence 23456777888999999999977542 1122 222322 221 11111233333333444444444442 12446
Q ss_pred cCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCC----CCCCCCCCCCeEEecccccCC
Q 009198 424 ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQK 499 (540)
Q Consensus 424 ~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~l~~aG~~~~~~ 499 (540)
.+++++++.+.++++|.+++|... +++.+.+.+|..+++.|..+.... ......+.+||++||+++..
T Consensus 369 ~~~~dee~~~~~~~~L~~~lG~~~-------~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g- 440 (463)
T PRK12416 369 KNYSEEELVRVALYDIEKSLGIKG-------EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG- 440 (463)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCC-------CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc-
Confidence 678999999999999999998521 245567778887776665553211 12223446899999999876
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHh
Q 009198 500 YLASMEGAVLSGKLCAQAIVQDYV 523 (540)
Q Consensus 500 ~~~~~~ga~~sg~~aA~~v~~~l~ 523 (540)
.+|++|+.||+++|++|++.+.
T Consensus 441 --~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 441 --VGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred --ccHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999998753
No 8
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.8e-35 Score=306.02 Aligned_cols=419 Identities=21% Similarity=0.311 Sum_probs=286.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHC----CCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCc
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~----g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 132 (540)
++||+|||||++||+||+.|+++ |++|+|+|+++++||++.+.. .+|+.+|.|+|++...++++.++++++|++.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~ 80 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEH 80 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCc
Confidence 46999999999999999999999 999999999999999999976 5789999999999988888999999999976
Q ss_pred ccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHH
Q 009198 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (540)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (540)
...+......+... ..+.+.. .|.. +..++.. ....+.++++...... . . .....++++.+|
T Consensus 81 ~~~~~~~~~~~~~~-~~g~~~~------~p~~---~~~~~~~-~~~~~~~~~~~~~~~~---~---~-~~~~~d~s~~e~ 142 (462)
T TIGR00562 81 VLVSDATGQRYVLV-NRGKLMP------VPTK---IAPFVKT-GLFSLGGKLRAGMDFI---R---P-ASPGKDESVEEF 142 (462)
T ss_pred ccccCCCCceEEEE-CCCceec------CCCC---hHHHhcC-CCCCchhhHHhhhhhc---c---C-CCCCCCcCHHHH
Confidence 54331111111110 0111111 1111 1112211 2223333332221110 0 0 012235899999
Q ss_pred HHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHH-----------Hhhhc-------------
Q 009198 213 MRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR-----------FLQEK------------- 268 (540)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----------~~~~~------------- 268 (540)
++++ ++..+.+.++.++....++.+++++++......+.. .....
T Consensus 143 l~~~-----------~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 211 (462)
T TIGR00562 143 VRRR-----------FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAK 211 (462)
T ss_pred HHHh-----------cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccccccc
Confidence 9987 677788889999999998889998887755433211 00000
Q ss_pred -cCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCC
Q 009198 269 -HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 347 (540)
Q Consensus 269 -~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~ 347 (540)
.|..+..+.+| ++.|++.|++.+.. ++|+++++|++|..++++ + .|++.+|+++.||+||+|+|+..+..|+++
T Consensus 212 ~~~~~~~~~~gG-~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~ 286 (462)
T TIGR00562 212 KQGQDFQTLATG-LETLPEEIEKRLKL--TKVYKGTKVTKLSHRGSN-Y-TLELDNGVTVETDSVVVTAPHKAAAGLLSE 286 (462)
T ss_pred ccCCceEecchh-HHHHHHHHHHHhcc--CeEEcCCeEEEEEecCCc-E-EEEECCCcEEEcCEEEECCCHHHHHHHhcc
Confidence 11113334454 66788888877742 689999999999974443 3 478888878999999999999999999876
Q ss_pred CchhhHHHHHHhccCCcCeEEEEEEeccccccc-cCccee--ecC---CceeEEeccCcccccccCCCccEEEEEeecc-
Q 009198 348 NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-YDHLLF--SRS---SLLSVYADMSLTCKEYYNPNQSMLELVFAPA- 420 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~- 420 (540)
.+....+++.++.+.++.++.+.|++++|.. ...+.+ +.. ....+.++ ++.++...+++..++..+..+.
T Consensus 287 --~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~-s~~~p~~~p~g~~~l~~~~~g~~ 363 (462)
T TIGR00562 287 --LSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFT-SKLFPNRAPPGKTLLTAYIGGAT 363 (462)
T ss_pred --cCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEE-ccccCCcCCCCcEEEEEEeCCCC
Confidence 3446778889999999999999999887643 233222 221 23344333 3344555666666554444332
Q ss_pred -ccccCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCC----CCCCCCCeEEeccc
Q 009198 421 -EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL----QRSPVEGFYLAGDY 495 (540)
Q Consensus 421 -~~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~l~~aG~~ 495 (540)
.++.+.+++++++.++++|.++++.. . .+....+.+|+++.+.+.++....... ...+.+|||+||++
T Consensus 364 ~~~~~~~~~ee~~~~v~~~L~~~~gi~--~-----~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~ 436 (462)
T TIGR00562 364 DESIVDLSENEIINIVLRDLKKVLNIN--N-----EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNS 436 (462)
T ss_pred CccccCCCHHHHHHHHHHHHHHHhCCC--C-----CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccc
Confidence 44557789999999999999999742 1 144567788888887777764322222 22346799999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHh
Q 009198 496 TKQKYLASMEGAVLSGKLCAQAIVQDYV 523 (540)
Q Consensus 496 ~~~~~~~~~~ga~~sg~~aA~~v~~~l~ 523 (540)
+.. .+|++|+.||+++|++|++.+.
T Consensus 437 ~~g---~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 437 FEG---VGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred cCC---CcHHHHHHHHHHHHHHHHHhhc
Confidence 764 5999999999999999998764
No 9
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=5.2e-35 Score=302.25 Aligned_cols=417 Identities=21% Similarity=0.257 Sum_probs=275.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcccc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g--~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 135 (540)
++|+|||||++||+||+.|++.| ++|+|+|+++++||++.+.. .+|+.+|.|+|++...++++.++++++|++....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCcccee
Confidence 47999999999999999999987 89999999999999999976 5789999999988887888999999999875433
Q ss_pred ccc-ccceeecCCCCCCcccccCCC--CCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHH
Q 009198 136 WKE-HSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (540)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (540)
... ....+.. .+....+.... ..+.. +..++ ....+...++.+..... ........++.++.+|
T Consensus 80 ~~~~~~~~~~~---~g~~~~~p~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~ 146 (451)
T PRK11883 80 ANTTGQSYIYV---NGKLHPIPPGTVMGIPTS---IAPFL-FAGLVSPIGKLRAAADL------RPPRWKPGQDQSVGAF 146 (451)
T ss_pred cCCCCcceEEE---CCeEEECCCCCeeccCCC---chhhh-cCCCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHH
Confidence 221 1111111 11111111000 01110 11111 01122222222211111 0111223456899999
Q ss_pred HHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHh----------h-----h--ccCcceee
Q 009198 213 MRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL----------Q-----E--KHGSKMAF 275 (540)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----------~-----~--~~g~~~~~ 275 (540)
+.+. ++..+.+.++.++...+++.+++++++......+.... . . ..+..+..
T Consensus 147 l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (451)
T PRK11883 147 FRRR-----------FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGT 215 (451)
T ss_pred HHHh-----------ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEe
Confidence 9876 67778888999998888888999988766543322111 0 0 11334556
Q ss_pred ecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHH
Q 009198 276 LDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYF 355 (540)
Q Consensus 276 ~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~ 355 (540)
+.+| ++.+++.|++.+.+. +|+++++|++|+..++ . +.|++.+|+++.||+||+|+|+..+..++.++ ...
T Consensus 216 ~~~G-~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~-~-~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~ 286 (451)
T PRK11883 216 LKGG-LQSLIEALEEKLPAG--TIHKGTPVTKIDKSGD-G-YEIVLSNGGEIEADAVIVAVPHPVLPSLFVAP----PAF 286 (451)
T ss_pred eccH-HHHHHHHHHHhCcCC--eEEeCCEEEEEEEcCC-e-EEEEECCCCEEEcCEEEECCCHHHHHHhccCh----hHH
Confidence 6777 788999988877543 8999999999997443 3 35778888889999999999999999987642 345
Q ss_pred HHHhccCCcCeEEEEEEecccccccc--Ccceee-cC--CceeEEeccCcccccccCCCccEEEEEeecc-cc-ccCCCh
Q 009198 356 KRLEKLVGVPVINIHIWFDRKLKNTY--DHLLFS-RS--SLLSVYADMSLTCKEYYNPNQSMLELVFAPA-EE-WISCSD 428 (540)
Q Consensus 356 ~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~~~~-~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 428 (540)
+++.++.+.++.++++.|+++++... .++++. +. ++..+.+ .+...+...+++..++..++... .. ..+.++
T Consensus 287 ~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ 365 (451)
T PRK11883 287 ALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTW-TSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATD 365 (451)
T ss_pred HHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEe-EcCcCCCCCCCCcEEEEEecCCCCCchhccCCH
Confidence 77888899999999999999853222 223333 22 2223322 23334555666666665544321 22 235689
Q ss_pred HHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCC----CCCCCCCCCeEEecccccCCCCCch
Q 009198 429 SEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCR----PLQRSPVEGFYLAGDYTKQKYLASM 504 (540)
Q Consensus 429 e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~l~~aG~~~~~~~~~~~ 504 (540)
+++++.++++|+++++... +.....+.+|.++.+.+.++..... +.... .+|||+||+++.+ .++
T Consensus 366 ~~~~~~~~~~L~~~~g~~~-------~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g---~~i 434 (451)
T PRK11883 366 EELVAFVLADLSKVMGITG-------DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEG---VGL 434 (451)
T ss_pred HHHHHHHHHHHHHHhCCCC-------CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCC---ccH
Confidence 9999999999999997421 1234566777777655555532211 11122 6799999999863 689
Q ss_pred HHHHHHHHHHHHHHHH
Q 009198 505 EGAVLSGKLCAQAIVQ 520 (540)
Q Consensus 505 ~ga~~sg~~aA~~v~~ 520 (540)
++|+.||+++|++|++
T Consensus 435 ~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 435 PDCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999975
No 10
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=9.3e-36 Score=305.29 Aligned_cols=421 Identities=20% Similarity=0.260 Sum_probs=254.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccC--cccHHHHHHhcCCCcccc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA--YPNIQNLFGELGINDRLQ 135 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~~~~ 135 (540)
.+|+|||||++||+||+.|.+.|++|+|||+++++||++.+.. ..|+.+|.|++|+.+. ...+.++++++|++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~ 79 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRT 79 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCceEec
Confidence 3799999999999999999999999999999999999999865 5688999999999753 334889999999964321
Q ss_pred cccccceeecCCCCCCcccccC-CCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHH
Q 009198 136 WKEHSMIFAMPNKPGEFSRFDF-PEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (540)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (540)
.......+ .........+.. ...+|. .....+.. ....+........ ....++.|+.+|++
T Consensus 80 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~s~~~~~~ 141 (435)
T PLN02268 80 SGDNSVLY--DHDLESYALFDMDGNQVPQ--ELVTKVGE---------TFERILEETEKVR-----DEHEEDMSLLQAIS 141 (435)
T ss_pred cCCccccc--cccccccceecCCCCCCCH--HHHHHHHH---------HHHHHHHHHHHHH-----hccCCCcCHHHHHH
Confidence 11000001 000000000000 000111 10100000 0000000000000 01235679999887
Q ss_pred HhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCccchhHHHHHHHH
Q 009198 215 KQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 294 (540)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~ 294 (540)
+........+..++...+.+.++.++ ...++.++++++...... .....|.. .+..+| ++.+++.|.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ls~~~~~~-----~~~~~g~~-~~~~~G-~~~l~~~l~~---- 209 (435)
T PLN02268 142 IVLERHPELRLEGLAHEVLQWYLCRM-EGWFAADADTISLKSWDQ-----EELLEGGH-GLMVRG-YDPVINTLAK---- 209 (435)
T ss_pred HHhhhCcccccchHHHHHHHHHHHHH-HHHhCCChHhCchhhcCC-----ccccCCCc-eeecCC-HHHHHHHHhc----
Confidence 65211110111122333333333332 234456777777543100 00011211 223334 4555555543
Q ss_pred cCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhc--CCCCchhhHHHHHHhccCCcCeEEEEEE
Q 009198 295 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ--LPENWKEMAYFKRLEKLVGVPVINIHIW 372 (540)
Q Consensus 295 ~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~l--l~~~~~~~~~~~~~~~~~~~~~~~i~l~ 372 (540)
+++|+++++|++|...+++ + .|++.+|+++.||+||+|+|+..+..+ ...+.+|....++++++.+.+..|+.+.
T Consensus 210 -~~~i~~~~~V~~i~~~~~~-v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~ 286 (435)
T PLN02268 210 -GLDIRLNHRVTKIVRRYNG-V-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALH 286 (435)
T ss_pred -cCceeCCCeeEEEEEcCCc-E-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEE
Confidence 5689999999999985444 3 488888888999999999999998653 2223456677888999999999999999
Q ss_pred eccccccccCccee--ecCCceeEEeccCcccccccCCCccEEEEEeec--cccccCCChHHHHHHHHHHHHHhCCCccc
Q 009198 373 FDRKLKNTYDHLLF--SRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEIS 448 (540)
Q Consensus 373 ~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~v~~~l~~~~p~~~~ 448 (540)
|+++||+....+.. ....-...+... ....+..++..+..+ ...+..++++++++.++++|.+++|....
T Consensus 287 f~~~fw~~~~~~g~~~~~~~~~~~~~~~------~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~ 360 (435)
T PLN02268 287 FDSVFWPNVEFLGVVAPTSYGCSYFLNL------HKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATE 360 (435)
T ss_pred eCCCCCCCCceeeccCCCCCCceEEEec------ccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCC
Confidence 99999975321111 111111111110 111334444433332 25567889999999999999999985322
Q ss_pred cccccceEEEEEEecCCCce--ecc-CCCC-CCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 009198 449 ADQSKAKIVKYHVVKTPRSV--YKT-IPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 522 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~p~~~--~~~-~~~~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l 522 (540)
+ .......|...|++. |.+ .|+. ....+.+++|++||||||++++..|+++|+||++||++||++|++.|
T Consensus 361 p----~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 361 P----VQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred c----cEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 2 234455666677743 332 3442 22334466788999999999999888999999999999999999764
No 11
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=6.3e-34 Score=291.56 Aligned_cols=414 Identities=29% Similarity=0.438 Sum_probs=281.0
Q ss_pred HHHHHHHHCCCceEEEecCCCCCcceeeeccCCC--CeeeccceeeccCcccHHHHHHhcCCCcccccccccceeecCCC
Q 009198 71 STAKYLADAGHKPLLLEARDVLGGKIAAWKDGDG--DWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNK 148 (540)
Q Consensus 71 ~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g--~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~ 148 (540)
+||+.|+++|++|+|||+++++||++.++. .+| +.+|.|+|++.+.++++.++++++|++...........+..+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-- 77 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDP-- 77 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecC--
Confidence 489999999999999999999999999986 444 459999999998889999999999998654321111122111
Q ss_pred CCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHHHhCCCchhhhhcCC
Q 009198 149 PGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGV 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 228 (540)
.+....+.. ..++.+......+. ....+...++.+....+...... .....+..++.+|++++ +.
T Consensus 78 ~~~~~~~~~-~~~~~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~l~~~----------~~ 142 (419)
T TIGR03467 78 GGRLSRLRL-SRLPAPLHLARGLL-RAPGLSWADKLALARALLALRRT---RFRALDDTTVGDWLQAA----------GQ 142 (419)
T ss_pred CCCceeecC-CCCCCCHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHhc---CccccCCCCHHHHHHHc----------CC
Confidence 111101111 11222222112222 22344455554443322211110 01245678999999998 67
Q ss_pred ChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHH-HhhhccCcceeeecCCCCccch-hHHHHHHHHcCcEEEeCccee
Q 009198 229 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLC-LPIVEHIQSLGGEVRLNSRVQ 306 (540)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~g~~~~~~~gg~~~~l~-~~l~~~l~~~G~~i~~~t~V~ 306 (540)
+..+.+.++.++....++.++++++.......+.. +.....+..+.++.+| +..++ +.|.+.+++.|++|++|++|+
T Consensus 143 ~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~~~~~~l~~~l~~~g~~i~~~~~V~ 221 (419)
T TIGR03467 143 SERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVP-LSELFPEPARRWLDSRGGEVRLGTRVR 221 (419)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCC-HHHHHHHHHHHHHHHcCCEEEcCCeee
Confidence 88888889999988888889999998877665533 2222223346788877 55555 558889988999999999999
Q ss_pred EEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhccCCcCeEEEEEEeccccccccCccee
Q 009198 307 KIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLF 386 (540)
Q Consensus 307 ~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~ 386 (540)
+|+.++++ +..+.+.+|+++.||+||+|+|+..+..|++++ ...+++.++.+.++.++++.|++++|.+.+...+
T Consensus 222 ~i~~~~~~-~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~ 296 (419)
T TIGR03467 222 SIEANAGG-IRALVLSGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGL 296 (419)
T ss_pred EEEEcCCc-ceEEEecCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeee
Confidence 99984443 322333467789999999999999999998762 3456778889999999999999999755443333
Q ss_pred ecCCceeEEeccCcccccccCCCccEEEEEeeccccccCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCC
Q 009198 387 SRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR 466 (540)
Q Consensus 387 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~ 466 (540)
...+.. +.++.+. . ++...++..++....++...+++++++.++++|.+++|..... .+....+.++..
T Consensus 297 ~~~~~~-~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~-----~~~~~~~~~~~~ 365 (419)
T TIGR03467 297 VGGLAQ-WLFDRGQ----L-AGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGA-----KPLWARVIKEKR 365 (419)
T ss_pred cCCcee-EEEECCc----C-CCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccC-----CccceEEEEccC
Confidence 222222 2222111 1 1222344444444566777899999999999999999863211 233344555666
Q ss_pred ceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHH
Q 009198 467 SVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 519 (540)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~ 519 (540)
+.|.+.++....++...++.+|||||||++.++++++|+||+.||.+||++|+
T Consensus 366 ~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 366 ATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred CccccCCcccccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 66666666555566667889999999999999888899999999999999986
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=6e-35 Score=304.46 Aligned_cols=432 Identities=20% Similarity=0.275 Sum_probs=283.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC-CCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcc
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~-g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 133 (540)
+.++||+|||||++||+||++|++. |++|+|+|+++++||++.+.. .+|+.+|.|+|++...++.+..++++ |++..
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~ 87 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLRDD 87 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CChhh
Confidence 4567999999999999999999999 999999999999999999986 57899999999998877778777777 87755
Q ss_pred cccccccc-eeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHH
Q 009198 134 LQWKEHSM-IFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (540)
Q Consensus 134 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (540)
..+..... .+... .++... + |.. ...++. ...+.+.++++......... .. ....+++++.+|
T Consensus 88 ~~~~~~~~~~~~~~--~g~~~~--~----p~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~sv~~~ 151 (496)
T PLN02576 88 LVFPDPQAPRYVVW--NGKLRP--L----PSN---PIDLPT-FDLLSAPGKIRAGLGAFGWK---RP-PPPGREESVGEF 151 (496)
T ss_pred eecCCCCceEEEEE--CCEEEE--c----CCC---hHHhcC-cCcCChhHHHHHhHHHhhcc---CC-CCCCCCCcHHHH
Confidence 43322111 11100 111111 1 111 111111 23344444444332221110 00 112457899999
Q ss_pred HHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHH---------------hhh----------
Q 009198 213 MRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF---------------LQE---------- 267 (540)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---------------~~~---------- 267 (540)
+.++ ++..+.+.++.++....++.+++++|+......+... ...
T Consensus 152 l~~~-----------~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~ 220 (496)
T PLN02576 152 VRRH-----------LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRD 220 (496)
T ss_pred HHHh-----------cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccc
Confidence 9987 7888999999999999999999999887654432211 000
Q ss_pred -----ccCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcE-EEEEEcCC-cEEEcCEEEEccCHHH
Q 009198 268 -----KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTV-KNFLLTNG-NVIDGDAYVFATPVDI 340 (540)
Q Consensus 268 -----~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~-~~V~~~~G-~~i~a~~VI~A~~~~~ 340 (540)
..+.......+| ++.|++.|++.+.+ .+|++|++|++|+..+++.+ +.+.+.+| +++.||+||+|+|+..
T Consensus 221 ~~~~~~~~~~~~~~~gG-~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~ 297 (496)
T PLN02576 221 PRLPKPKGQTVGSFRGG-LQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYV 297 (496)
T ss_pred cccccccCCeeEeccch-HHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHH
Confidence 011122333455 67888888876621 58999999999998555422 22333355 3699999999999999
Q ss_pred HhhcCCCCchhhHHHHHHhccCCcCeEEEEEEeccccccc-------cCccee--ec-C--CceeEEeccCcccccccCC
Q 009198 341 LKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-------YDHLLF--SR-S--SLLSVYADMSLTCKEYYNP 408 (540)
Q Consensus 341 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-------~~~~~~--~~-~--~~~~~~~~~s~~~~~~~~~ 408 (540)
+..++++. +....+.+.++.+.++.++++.|++++|.. ...+.+ .. . ...++.+ .+...+...++
T Consensus 298 l~~ll~~~--~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~-~s~~~p~~~~~ 374 (496)
T PLN02576 298 VSEMLRPK--SPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIY-SSSLFPDRAPE 374 (496)
T ss_pred HHHHhccc--CHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEe-ecCcCCCCCCC
Confidence 99998753 335677888999999999999999987753 112111 11 1 1122222 12233444455
Q ss_pred CccEEEEEeec--cccccCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCC---
Q 009198 409 NQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR--- 483 (540)
Q Consensus 409 ~~~~~~~~~~~--~~~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--- 483 (540)
+..++..+..+ ...+..++++++++.++++|.+++|....+ ........+|+++.+.+.+++....+..+
T Consensus 375 ~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~-----~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l 449 (496)
T PLN02576 375 GRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAP-----PPKVVGVRVWPKAIPQYLLGHLDVLEAAEKME 449 (496)
T ss_pred CCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCC-----CCcEEEEeEcCcccCCCCcCHHHHHHHHHHHH
Confidence 54444333332 245667889999999999999999852111 11233456677777666666432221111
Q ss_pred CCC--CCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhHHHhhc
Q 009198 484 SPV--EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARG 529 (540)
Q Consensus 484 ~~~--~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~~~~~~~ 529 (540)
.+. +|||+||+++.. .++++|+.||+++|++|+..+...+.+|
T Consensus 450 ~~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~~~~~~~ 494 (496)
T PLN02576 450 KDLGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYLESSAYKK 494 (496)
T ss_pred HhcCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 123 799999999975 6999999999999999999987665544
No 13
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-34 Score=285.23 Aligned_cols=409 Identities=23% Similarity=0.329 Sum_probs=291.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcccc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g--~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 135 (540)
+.|+|||||++||+|||+|++++ .+|+|||+.+++||.+.++. .+|+.+|.|+|.+...-..+.++++++|++..+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 47999999999999999999998 89999999999999999986 8999999999988866677999999999999877
Q ss_pred cccccce-eecCCCCCCcccccCCC--CCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHH
Q 009198 136 WKEHSMI-FAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (540)
Q Consensus 136 ~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (540)
+...... ++.. +++..+.... .+|..... ....+...+..+. ....+...++.++.+|
T Consensus 80 ~~~~~~~~i~~~---gkl~p~P~~~i~~ip~~~~~-----------~~~~~~~~~~~~~-----~~~~~~~~~d~sv~~f 140 (444)
T COG1232 80 WNSTARKYIYYD---GKLHPIPTPTILGIPLLLLS-----------SEAGLARALQEFI-----RPKSWEPKQDISVGEF 140 (444)
T ss_pred cCCcccceEeeC---CcEEECCccceeecCCcccc-----------chhHHHHHHHhhh-----cccCCCCCCCcCHHHH
Confidence 6644433 2222 2222222111 01110000 0001111111111 1111344567899999
Q ss_pred HHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCc------------------cee
Q 009198 213 MRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS------------------KMA 274 (540)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~------------------~~~ 274 (540)
++++ +++++.+.++.+++.++++.+.+++|+......+... +..+++ .+.
T Consensus 141 ~r~~-----------fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~-e~~~~s~~~g~~~~~~~~~~~~~~~~~ 208 (444)
T COG1232 141 IRRR-----------FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARA-ERKYGSLLRGAKKEGLPKQSLKKEKFG 208 (444)
T ss_pred HHHH-----------HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhh-hhhhcchhhhhhhccCccccccccccc
Confidence 9998 8899999999999999999999999988444333221 112222 244
Q ss_pred eecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHH
Q 009198 275 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAY 354 (540)
Q Consensus 275 ~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~ 354 (540)
+..|| ++.|+++|.+.+..+ |+++++|++|.++.++. .+++.+|+.+.||.||+|+|++.+..++++. ..
T Consensus 209 ~~~gG-~~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~--~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~----~~ 278 (444)
T COG1232 209 YLRGG-LQSLIEALAEKLEAK---IRTGTEVTKIDKKGAGK--TIVDVGGEKITADGVISTAPLPELARLLGDE----AV 278 (444)
T ss_pred ccCcc-HHHHHHHHHHHhhhc---eeecceeeEEEEcCCcc--EEEEcCCceEEcceEEEcCCHHHHHHHcCCc----ch
Confidence 55666 899999999998765 99999999999853333 4667788889999999999999999999882 34
Q ss_pred HHHHhccCCcCeEEEEEEeccc----cccccCccee-ecCCceeEEeccCcccccccCCCccEEEEEeecc-ccc-cCCC
Q 009198 355 FKRLEKLVGVPVINIHIWFDRK----LKNTYDHLLF-SRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPA-EEW-ISCS 427 (540)
Q Consensus 355 ~~~~~~~~~~~~~~i~l~~~~~----~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 427 (540)
.+...++.+.++.++.+.++++ ..+.+ ++.+ .+.+...-+...|..++...|.+.+++.+.+... +++ ..++
T Consensus 279 ~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~-g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~ 357 (444)
T COG1232 279 SKAAKELQYTSVVTVVVGLDEKDNPALPDGY-GLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMS 357 (444)
T ss_pred hhhhhhccccceEEEEEEeccccccCCCCce-EEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccC
Confidence 5667788888999999999986 22222 2333 3444232233456677777777888877655443 333 3567
Q ss_pred hHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCC----CCCCCCCeEEecccccCCCCCc
Q 009198 428 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL----QRSPVEGFYLAGDYTKQKYLAS 503 (540)
Q Consensus 428 ~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~l~~aG~~~~~~~~~~ 503 (540)
||++++.++++|.++++....+ ..+.+.+|+.+++.|.+++...... +.+..+||+.+|.+... -|
T Consensus 358 dee~~~~~l~~L~~~~~~~~~~-------~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g 427 (444)
T COG1232 358 DEELVAAVLDDLKKLGGINGDP-------VFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VG 427 (444)
T ss_pred HHHHHHHHHHHHHHHcCcCcch-------hheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC---CC
Confidence 9999999999999999864322 2677889999998888875333222 22234899999988764 49
Q ss_pred hHHHHHHHHHHHHHHH
Q 009198 504 MEGAVLSGKLCAQAIV 519 (540)
Q Consensus 504 ~~ga~~sg~~aA~~v~ 519 (540)
+.+|+.+|..||++|+
T Consensus 428 ~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 428 LPDCIAAGKEAAEQLL 443 (444)
T ss_pred chHHHHHHHHHHHHhh
Confidence 9999999999999986
No 14
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-34 Score=296.33 Aligned_cols=424 Identities=19% Similarity=0.264 Sum_probs=283.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcccc
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 135 (540)
...||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|+.+|.|+|++...++.+.+++++++......
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~ 81 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFL 81 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCccc
Confidence 456999999999999999999999999999999999999998865 5789999999999988889999999998633322
Q ss_pred cccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHHH
Q 009198 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (540)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (540)
.......... .+.+.. .|.. ....+. .+.+.+..+......... .....++.++.+|+.+
T Consensus 82 ~~~~~~~~~~---~g~~~~------~p~~---~~~~l~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~e~l~~ 141 (479)
T PRK07208 82 LRPRLSRIYY---RGKFFD------YPLK---AFDALK---NLGLWRTAKCGASYLKAR-----LRPRKEEDSFEDWVIN 141 (479)
T ss_pred cccccceEEE---CCEEec------CCcc---hhHHHH---hCCHhHHHHHHHHHHHHh-----cCCCCCCCCHHHHHHH
Confidence 2111111111 111111 1111 011111 112222222222111110 0111356899999998
Q ss_pred hCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHH---------HHHHhhhc-------------cCcce
Q 009198 216 QVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIA---------LNRFLQEK-------------HGSKM 273 (540)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~---------~~~~~~~~-------------~g~~~ 273 (540)
+ ++..+.+.++.++...+++.+++++++.+.... +...+... ....+
T Consensus 142 ~-----------~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (479)
T PRK07208 142 R-----------FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEF 210 (479)
T ss_pred h-----------hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEE
Confidence 7 678889999999999999999999987653321 11111110 01245
Q ss_pred eeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc--CCc--EEEcCEEEEccCHHHHhhcCCCCc
Q 009198 274 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDILKLQLPENW 349 (540)
Q Consensus 274 ~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~--~G~--~i~a~~VI~A~~~~~~~~ll~~~~ 349 (540)
.++.|| ++.+++.|.+.+.+.|++|+++++|++|..++++.++.++.. +|+ ++.||+||+|+|+..+..++++.
T Consensus 211 ~~p~gG-~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~- 288 (479)
T PRK07208 211 RYPKLG-PGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP- 288 (479)
T ss_pred eCCCCC-cchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-
Confidence 677777 799999999999999999999999999998555544444432 353 58999999999999888888643
Q ss_pred hhhHHHHHHhccCCcCeEEEEEEeccccccccCcceeecCC-ceeEEeccCcccccccCCCcc-EEEEEe-e--cccccc
Q 009198 350 KEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSS-LLSVYADMSLTCKEYYNPNQS-MLELVF-A--PAEEWI 424 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~-~~~~~~-~--~~~~~~ 424 (540)
.+....+++.++.+.++.++++.|+++...+...+.+.+.. ........++..+...|++.+ .+...+ . +...|
T Consensus 289 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~- 367 (479)
T PRK07208 289 PPPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLW- 367 (479)
T ss_pred CCHHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccc-
Confidence 34466677788888899999999998754332222222211 111111122222444566653 232212 1 22344
Q ss_pred CCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCC---CCCCCCCeEEecccccCCCC
Q 009198 425 SCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL---QRSPVEGFYLAGDYTKQKYL 501 (540)
Q Consensus 425 ~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~l~~aG~~~~~~~~ 501 (540)
.++|+++++.++++|.++.+. . ...+....+.+++.+++.+..+....... ..++.+|||+||++....|
T Consensus 368 ~~~deel~~~~~~~L~~l~~~--~----~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~- 440 (479)
T PRK07208 368 NMSDEDLIALAIQELARLGLI--R----PADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY- 440 (479)
T ss_pred cCCHHHHHHHHHHHHHHcCCC--C----hhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-
Confidence 678999999999999997321 1 22467778888998887776664322221 3356799999999887766
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 009198 502 ASMEGAVLSGKLCAQAIVQD 521 (540)
Q Consensus 502 ~~~~ga~~sg~~aA~~v~~~ 521 (540)
.++++|+.||+++|++|++.
T Consensus 441 ~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 441 NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred CChhHHHHHHHHHHHHHhcC
Confidence 49999999999999999877
No 15
>PLN02676 polyamine oxidase
Probab=100.00 E-value=5.7e-34 Score=291.96 Aligned_cols=422 Identities=19% Similarity=0.192 Sum_probs=259.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCCCCcceeeeccCCCCeeeccceeecc----CcccHHHHHHhcC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG----AYPNIQNLFGELG 129 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lg 129 (540)
+..+||+|||||++||+||++|++.|. +|+|+|+++++||++.+.. ..|+.+|.|++++.+ ....+.++++++|
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g 102 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKLK 102 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhcC
Confidence 457799999999999999999999998 6999999999999998865 578899999999964 3345788999999
Q ss_pred CCcccccccc-cceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCC
Q 009198 130 INDRLQWKEH-SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLT 208 (540)
Q Consensus 130 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 208 (540)
++........ ...... ..+.. .+. .....+.. ....+..+......... ....++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~--~~g~~--------~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~s 160 (487)
T PLN02676 103 LRTFYSDFDNLSSNIYK--QDGGL--------YPK--KVVQKSMK---------VADASDEFGENLSISLS-AKKAVDIS 160 (487)
T ss_pred CceeecCccccceeEEC--CCCCC--------CCH--HHHHHHHH---------HHHHHHHHHHHHHHhhc-ccCCCCcc
Confidence 8754221110 000000 01110 000 00000000 00000000000000000 11223444
Q ss_pred H--HHHHHHhCCCchhhhhcCCChHHHHHHHHHHHh-hccCCCCccchHHHHHHHHHHHhhhccCcceeee--cCCCCcc
Q 009198 209 V--QEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSK-ALNFINPDELSMQCILIALNRFLQEKHGSKMAFL--DGNPPER 283 (540)
Q Consensus 209 ~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~--~gg~~~~ 283 (540)
+ ..++.+. ............+.. ...+.+++++|+..... ...+. ..|....+. .+| ++.
T Consensus 161 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~--~~~~~-~~g~~~~~~~~~~G-~~~ 225 (487)
T PLN02676 161 ILTAQRLFGQ-----------VPKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEP--NPTFV-DFGEDEYFVADPRG-YES 225 (487)
T ss_pred HHHHHHHHhh-----------CCCCHHHHHHHHHhccceeccCccccchhhcCc--ccccc-cCCCceEEeecCCC-HHH
Confidence 4 3333333 100011111111111 11345667777654321 01111 123223333 344 788
Q ss_pred chhHHHHHHHHc------CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCCchhhHHH
Q 009198 284 LCLPIVEHIQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYF 355 (540)
Q Consensus 284 l~~~l~~~l~~~------G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~--ll~~~~~~~~~~ 355 (540)
+++.|++.+.++ +.+|++|++|++|..++++ + .|++.+|+++.||+||+|+|..++.. +...+.+|...+
T Consensus 226 l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~ 303 (487)
T PLN02676 226 LVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG-V-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKI 303 (487)
T ss_pred HHHHHHhhcccccccccCCCceecCCEeeEEEEcCCc-E-EEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHH
Confidence 999999877543 2579999999999985443 3 58899998899999999999999875 544445677778
Q ss_pred HHHhccCCcCeEEEEEEeccccccc-cCcc--eeecCC--ceeEEeccCcccccccCCCccEEEEEeec--cccccCCCh
Q 009198 356 KRLEKLVGVPVINIHIWFDRKLKNT-YDHL--LFSRSS--LLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSD 428 (540)
Q Consensus 356 ~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~--~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 428 (540)
++++++.+....||++.|+++||+. .+.. .+.... ....+... ...+++..++..++.+ ...|..+++
T Consensus 304 ~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~g~~a~~~~~~s~ 378 (487)
T PLN02676 304 EAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHL-----ENEYPGSNVLFVTVTDEESRRIEQQPD 378 (487)
T ss_pred HHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhc-----ccCCCCCCEEEEEechHHHHHHHhCCH
Confidence 8999999999999999999999975 1111 111110 00000000 0012233444444432 355678899
Q ss_pred HHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCc--eecc-CCCC-CCCCCCCCCCCCCeEEecccccCCCCCch
Q 009198 429 SEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRS--VYKT-IPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASM 504 (540)
Q Consensus 429 e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~--~~~~-~~~~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~ 504 (540)
++.++.+++.|.++||.... ....+....|...|++ .|.+ .|+. ......+++|+++|||||++++..|+++|
T Consensus 379 e~~~~~vl~~L~~~~g~~~~---~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~ 455 (487)
T PLN02676 379 SETKAEIMEVLRKMFGPNIP---EATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYV 455 (487)
T ss_pred HHHHHHHHHHHHHHhCCCCC---CcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccch
Confidence 99999999999999974221 1234556677778884 3443 3443 22344567789999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 009198 505 EGAVLSGKLCAQAIVQDYVL 524 (540)
Q Consensus 505 ~ga~~sg~~aA~~v~~~l~~ 524 (540)
+||++||+|||++|++.++.
T Consensus 456 eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 456 HGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998864
No 16
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=5.5e-33 Score=288.80 Aligned_cols=430 Identities=22% Similarity=0.262 Sum_probs=262.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCc--ccHHHHHHhcCCCcc-
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY--PNIQNLFGELGINDR- 133 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~--~~~~~l~~~lgl~~~- 133 (540)
+.||||||||++||+||..|+++|++|+|+|+++.+||++.++. .+|+.+|.|+|++.... ..+..+++++|++..
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~ 79 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPE 79 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcc
Confidence 36999999999999999999999999999999999999999997 58999999999987542 236788899997632
Q ss_pred cccccccceeecCCCCCCcccccCCC-----------CCCCc---hhHHHHhhh-------cCCCC---ChhHHHHhhhc
Q 009198 134 LQWKEHSMIFAMPNKPGEFSRFDFPE-----------VLPAP---LNGILAILR-------NNEML---TWPEKVKFAIG 189 (540)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~~-------~~~~~---~~~~~~~~~~~ 189 (540)
............++ +. ..+.+.. ..|.. +..+..... ....+ ...+....+..
T Consensus 80 ~~~~d~~~~~~~~d--g~-~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (492)
T TIGR02733 80 AKILDPACAVDLPD--GS-EPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSA 156 (492)
T ss_pred cccCCCCcEEEECC--Cc-eEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Confidence 11111111111111 10 0011000 01111 000000000 00000 00010000000
Q ss_pred hhhhHhcCcccccccCCCCHHHHHHHhCCCchhhhhcC-CChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhc
Q 009198 190 LLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELG-VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK 268 (540)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 268 (540)
+.+.. .........++.+|+++. + +.....+.++..........++++.+.......+. +....
T Consensus 157 ~~~~~----~~~~~~~~~s~~~~l~~~----------~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 221 (492)
T TIGR02733 157 LRPDT----LLTGPLSLLTVADLLRLC----------GLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQ-MAQAP 221 (492)
T ss_pred cChhh----hhhhhhhhhhHHHHHHHh----------CCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhh-ccccC
Confidence 00000 000112246777777664 3 23334444444332222234455555444322221 12211
Q ss_pred cCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC-----cEEEcCEEEEccCHHHHhh
Q 009198 269 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 269 ~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G-----~~i~a~~VI~A~~~~~~~~ 343 (540)
.| ..++.|| ++.|+++|.+.++++|++|+++++|++|.. +++++.+|.+.+| +++.||+||+|+++..+.+
T Consensus 222 ~G--~~~~~GG-~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ 297 (492)
T TIGR02733 222 HG--LWHLHGS-MQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE 297 (492)
T ss_pred CC--ceeecCc-HHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH
Confidence 22 3457777 899999999999999999999999999998 4555556766554 5799999999999999889
Q ss_pred cCCCCchhhHHHHHHhccCCcC-eEEEEEEecccccc-c-cCcc--eeecCCceeEEeccCcccccccCCCccEEE-EEe
Q 009198 344 QLPENWKEMAYFKRLEKLVGVP-VINIHIWFDRKLKN-T-YDHL--LFSRSSLLSVYADMSLTCKEYYNPNQSMLE-LVF 417 (540)
Q Consensus 344 ll~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~-~-~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~ 417 (540)
|++++..+..+.+++++..+.+ .+++++.+++...+ . ..++ .+.... ++|...+...+..+|+|.+++. .++
T Consensus 298 ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~d~~~aP~G~~~l~~~~~ 375 (492)
T TIGR02733 298 LLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQG--SLFVSISQEGDGRAPQGEATLIASSF 375 (492)
T ss_pred hcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCc--eEEEEeCCccccCCCCCceEEEEEcC
Confidence 9886555656777787777765 66899999874311 1 1121 222222 3444333345677888887764 345
Q ss_pred eccccccCCC-------hHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCce-----------eccCCCCC---
Q 009198 418 APAEEWISCS-------DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-----------YKTIPNCE--- 476 (540)
Q Consensus 418 ~~~~~~~~~~-------~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~~--- 476 (540)
+++..|..+. .+++.+++++.+++.+|+.. .++ ......+|.++ |+..+...
T Consensus 376 ~~~~~~~~~~~~~y~~~k~~~~~~il~~le~~~p~l~------~~i-~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~ 448 (492)
T TIGR02733 376 TDTNDWSSLDEEDYTAKKKQYTQTIIERLGHYFDLLE------ENW-VHVELATPRTFERWTGRPQGIVGGLGQRPSTFG 448 (492)
T ss_pred CCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHCCCcc------ccE-EEEEccCCchHHHHhCCCCcEECCCCcCccccC
Confidence 5555554321 35688999999999999732 234 34456777753 22222111
Q ss_pred CCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHH
Q 009198 477 PCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 520 (540)
Q Consensus 477 ~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~ 520 (540)
.+.+..+++++||||||+++.++ +|+.|+++||+.+|++|+.
T Consensus 449 ~~~~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 449 PFGLSSRTPVKGLWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CcCCCCCCCCCCeEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 12334468899999999999886 7999999999999999975
No 17
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-34 Score=273.82 Aligned_cols=427 Identities=20% Similarity=0.176 Sum_probs=266.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCccc
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL 134 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 134 (540)
...+||+|||+|.+||++|+.|.+.|++|+|+|+++++||++.+... .+...|+|++++...+..+..+.+++|++...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~ 83 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEFGVPLEP 83 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhcCCCCCc
Confidence 56789999999999999999999999999999999999999999775 78899999999988777899999999998765
Q ss_pred ccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHH
Q 009198 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (540)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (540)
................. .|.-........+. ...+................+...+.+.+++..| +
T Consensus 84 fi~~g~~~~~~~~~~~~---------~p~~~~~~~~d~~~----~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~ 149 (450)
T COG1231 84 FIRDGDNVIGYVGSSKS---------TPKRSLTAAADVRG----LVAELEAKARSAGELDPGLTPEDRELDLESLAAW-K 149 (450)
T ss_pred eeccCcccccccccccc---------cchhccchhhhhcc----hhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h
Confidence 44432222111000000 01100000000000 0000000000000011111122233344566666 1
Q ss_pred HhCCCchhhhhcCCChHHHHHHHHHHHhhccC--CCCccchHH------HHHHHHHHHhhhccCcceeeecCCCCccchh
Q 009198 215 KQVQPSDLVRELGVPDRVTTEVFIAMSKALNF--INPDELSMQ------CILIALNRFLQEKHGSKMAFLDGNPPERLCL 286 (540)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~------~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~ 286 (540)
.. ... +++... ...... ..+.++... .....+..............+-|| ++.+.+
T Consensus 150 ~~-~~~------~~~~~~--------~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GG-md~la~ 213 (450)
T COG1231 150 TS-SLR------GLSRDP--------GARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGG-MDQLAE 213 (450)
T ss_pred hc-ccc------ccccCc--------cceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCcc-HHHHHH
Confidence 11 000 111000 000000 111111111 111111111111112223333355 788888
Q ss_pred HHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhccCCcCe
Q 009198 287 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPV 366 (540)
Q Consensus 287 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (540)
++.+.+ |..|.++++|++|.+.++| | .|++.+.+++.+|.||+|+|..++.++.-++..+..+++++..+.|.+.
T Consensus 214 Afa~ql---~~~I~~~~~V~rI~q~~~g-V-~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~ 288 (450)
T COG1231 214 AFAKQL---GTRILLNEPVRRIDQDGDG-V-TVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSA 288 (450)
T ss_pred HHHHHh---hceEEecCceeeEEEcCCe-E-EEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchh
Confidence 887766 5689999999999985554 3 5888884489999999999999999987666677788899999999999
Q ss_pred EEEEEEeccccccc---cCcceeecCCceeEEeccCcccccccCCCccEEEEE---eeccccccCCChHHHHHHHHHHHH
Q 009198 367 INIHIWFDRKLKNT---YDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELV---FAPAEEWISCSDSEIIDATMKELA 440 (540)
Q Consensus 367 ~~i~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~~v~~~l~ 440 (540)
+|+.+.|+++||++ +++..+.+..+..++.+ +. ....+..|+... ..++..|..+++++..+.++..+.
T Consensus 289 ~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~-s~----~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~ 363 (450)
T COG1231 289 TKIGVAFSRPFWEEAGILGGESLTDLGLGFISYP-SA----PFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLA 363 (450)
T ss_pred eeeeeecCchhhhhcccCCceEeecCCcceEecC-cc----ccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHh
Confidence 99999999999985 44566666664444322 11 122344454442 345688999999999999999999
Q ss_pred HhCCCccccccccceEEEEEEecCCCce--e-ccCCC-CCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHH
Q 009198 441 KLFPDEISADQSKAKIVKYHVVKTPRSV--Y-KTIPN-CEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQ 516 (540)
Q Consensus 441 ~~~p~~~~~~~~~~~~~~~~~~~~p~~~--~-~~~~~-~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~ 516 (540)
++||+.....+ .......|...|++. + .+.++ ....-+.+..|.++|+|||....+.++|+++||++||++||.
T Consensus 364 ~~~g~~a~~~f--~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ 441 (450)
T COG1231 364 KLFGDEAADPF--DYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAA 441 (450)
T ss_pred hhCChhhcccc--ccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHH
Confidence 99996332211 122334566666643 2 23344 344566667789999999966667788999999999999999
Q ss_pred HHHHHHhH
Q 009198 517 AIVQDYVL 524 (540)
Q Consensus 517 ~v~~~l~~ 524 (540)
+|...+.+
T Consensus 442 ei~~~l~s 449 (450)
T COG1231 442 EIHALLSS 449 (450)
T ss_pred HHHHhhcC
Confidence 99987753
No 18
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1.3e-32 Score=288.39 Aligned_cols=428 Identities=19% Similarity=0.201 Sum_probs=255.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccC-CC--CeeeccceeeccCccc-HHHHHHhcCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DG--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~-~g--~~~d~G~~~~~~~~~~-~~~l~~~lgl 130 (540)
....||+|||||++||+||..|+++|++|+|+|+++++||++.+.... +| ..+|.|++|+.+...+ +..+.+++|+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl 237 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSI 237 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCC
Confidence 456799999999999999999999999999999999999999987632 23 4799999999987666 7889999998
Q ss_pred CcccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHH
Q 009198 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (540)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 210 (540)
+.... .....++.. .+...... ... .+...+ .+..+....+..... ...++.|+.
T Consensus 238 ~~~~~-~~~~~~~~~---~G~~v~~~----~~~---~~~~~~--------~~~l~~~~~l~~~~~------~~~~d~Sl~ 292 (738)
T PLN02529 238 PLHKV-RDNCPLYKP---DGALVDKE----IDS---NIEFIF--------NKLLDKVTELRQIMG------GFANDISLG 292 (738)
T ss_pred Ccccc-CCCceEEeC---CCcCcchh----hhh---hHHHHH--------HHHHHHHHHHHHhcc------cCccCCCHH
Confidence 65321 111111111 11110000 000 000000 000000000000000 123467899
Q ss_pred HHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCccchhHHHH
Q 009198 211 EWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVE 290 (540)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~ 290 (540)
+|+++... ... ..... ..+.++........+.....++.......... .....+.....+.|| ++.++++|++
T Consensus 293 ~~le~~~~---~~~-~~~t~-~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~-~~~e~~G~~~~i~GG-~~~Li~aLA~ 365 (738)
T PLN02529 293 SVLERLRQ---LYG-VARST-EERQLLDWHLANLEYANAGCLSDLSAAYWDQD-DPYEMGGDHCFLAGG-NWRLINALCE 365 (738)
T ss_pred HHHHHHHh---hhc-cCCCH-HHHHHHHHHHHHhceecCCChHHhhhhHhhhc-cccccCCceEEECCc-HHHHHHHHHh
Confidence 99876410 000 00111 22344444443333333333332222111111 001223344556666 6788887775
Q ss_pred HHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCCchhhHHHHHHhccCCcCeEE
Q 009198 291 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVIN 368 (540)
Q Consensus 291 ~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~--ll~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
+..|++|++|++|...+++ + .|++ +++++.||+||+|+|..++.. +.-.+.+|....++++++.+.++.|
T Consensus 366 -----~L~IrLnt~V~~I~~~~dG-V-tV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~K 437 (738)
T PLN02529 366 -----GVPIFYGKTVDTIKYGNDG-V-EVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNK 437 (738)
T ss_pred -----cCCEEcCCceeEEEEcCCe-E-EEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEE
Confidence 3469999999999985444 3 4655 445799999999999999874 3223345667889999999999999
Q ss_pred EEEEecccccccc-Ccceee--cC-CceeEEeccCcccccccCCCccEEEEEee-c-cccccCCChHHHHHHHHHHHHHh
Q 009198 369 IHIWFDRKLKNTY-DHLLFS--RS-SLLSVYADMSLTCKEYYNPNQSMLELVFA-P-AEEWISCSDSEIIDATMKELAKL 442 (540)
Q Consensus 369 i~l~~~~~~~~~~-~~~~~~--~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~e~~~~~v~~~l~~~ 442 (540)
|++.|+++||+.. +.+.+. .. ....++...+ .....+..++..+.. + +..+..++++++++.+++.|.++
T Consensus 438 V~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~----~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~i 513 (738)
T PLN02529 438 VAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYG----YHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGI 513 (738)
T ss_pred EEEEeCCccccCCCCceEEEeccCCCCceEEEEec----CCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999653 222211 11 1001111111 011122234433332 2 35567789999999999999999
Q ss_pred CCCccccccccceEEEEEEecCCCc--eeccCC-CCCC-CCCCCCCC-CCCeEEecccccCCCCCchHHHHHHHHHHHHH
Q 009198 443 FPDEISADQSKAKIVKYHVVKTPRS--VYKTIP-NCEP-CRPLQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 517 (540)
Q Consensus 443 ~p~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~-~~~~-~~~~~~~~-~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~ 517 (540)
|+......+....++...|...|++ .|.+.. +... ....+..| .++|||||++++..|+++|+||++||+|||++
T Consensus 514 fgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~e 593 (738)
T PLN02529 514 YNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASR 593 (738)
T ss_pred hCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHH
Confidence 9731111111234555667777774 344322 2111 11223344 58999999999999999999999999999999
Q ss_pred HHHHHhHHH
Q 009198 518 IVQDYVLLA 526 (540)
Q Consensus 518 v~~~l~~~~ 526 (540)
|++.++...
T Consensus 594 Il~~l~~~~ 602 (738)
T PLN02529 594 ILHVARSQQ 602 (738)
T ss_pred HHHHHhhhh
Confidence 999887533
No 19
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.4e-33 Score=280.24 Aligned_cols=428 Identities=25% Similarity=0.313 Sum_probs=251.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcc-cHHHHHHhcCCCc
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP-NIQNLFGELGIND 132 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~-~~~~l~~~lgl~~ 132 (540)
....++|+|||||+|||+||.+|.+.|++|+|||+++++||++.++....+..+|+|++++.+.+. .+..+.+++|++.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~ 91 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLEL 91 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCccc
Confidence 346779999999999999999999999999999999999999999987777789999999999988 4777889999986
Q ss_pred ccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHH
Q 009198 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (540)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (540)
.. .......+...+ ......+....+.....+..-..... +....... .....++.+.
T Consensus 92 ~~-~~~~~~l~~~~~---~~~~~~~d~~~~~~~~~l~~~~~~~~--------~~~~~~~~----------~i~~~~~~~~ 149 (501)
T KOG0029|consen 92 YK-VRDTCPLFNENG---GESDKVFDDFVEQEFNRLLDDASNLE--------QRLDNEII----------GISDDSFGEA 149 (501)
T ss_pred ce-ecccccccccCC---cccccccccchhhhhHHHHHHHhhhh--------hhhhhccc----------ccccccHHHH
Confidence 42 222222222221 11111111111111111111000000 00000000 0000111111
Q ss_pred HHHhCC------CchhhhhcCCChHHHHHHHHHHHhhc--cCCCC-ccchHHHHHHHHHHHhhhccCcceeeecCCCCcc
Q 009198 213 MRKQVQ------PSDLVRELGVPDRVTTEVFIAMSKAL--NFINP-DELSMQCILIALNRFLQEKHGSKMAFLDGNPPER 283 (540)
Q Consensus 213 l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~ 283 (540)
+..... ........+. ....+......+ ..... +.++.. .......+. ..+ ......+| ...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~-~~~-~~~~~~~G-~~~ 220 (501)
T KOG0029|consen 150 LEAFLSASRLMKTLLELLLEGE----ADKVLQWHLVNLELTFIAHLENASAR--LWDQDELFG-GGG-IHLLMKGG-YEP 220 (501)
T ss_pred HHhHHHHHHHHHhhHHHhhhhh----hhHHHHHHHHHHHHHhhccHhHhhHH--hhhhhhhcc-ccc-chhHhhCC-ccH
Confidence 111000 0000000011 111111111111 11111 111111 111111111 111 11223333 345
Q ss_pred chhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCCchhhHHHHHHhcc
Q 009198 284 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKL 361 (540)
Q Consensus 284 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~--ll~~~~~~~~~~~~~~~~ 361 (540)
++..++. |..|+++..|.+|...+++. +.+++.++..+.+|+||+|+|..++.. +...+.+|....++++++
T Consensus 221 v~~~la~-----~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~l 294 (501)
T KOG0029|consen 221 VVNSLAE-----GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRL 294 (501)
T ss_pred HHhhcCC-----CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhc
Confidence 5555544 89999999999999866665 346667776799999999999999887 555566788899999999
Q ss_pred CCcCeEEEEEEeccccccc-cCccee--ecCCcee--EEeccCcccccccCCCccEEEEEeec--cccccCCChHHHHHH
Q 009198 362 VGVPVINIHIWFDRKLKNT-YDHLLF--SRSSLLS--VYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDA 434 (540)
Q Consensus 362 ~~~~~~~i~l~~~~~~~~~-~~~~~~--~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~ 434 (540)
....+.||.+.|++.||.. .+.+.. ......+ .+.++. .. .+..++....+. ...+..++++++++.
T Consensus 295 g~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~----~~--~~~~~l~~~~~~~~a~~~~~~~~~~~~~~ 368 (501)
T KOG0029|consen 295 GFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCK----PV--AGHPVLMSVVVGEAAERVETLSDSEIVKK 368 (501)
T ss_pred CCCceeEEEEEeccccCCCCcCeEEEccccccccchhhhhhcC----cc--CCCCeEEEEehhhhhHHHhcCCHHHHHHH
Confidence 9999999999999999952 222221 1111111 111111 11 111233333332 467889999999999
Q ss_pred HHHHHHHhCCCccccccccceEEEEEEecCCCceeccCC-CCCCCC-CCCCCCCCC-eEEecccccCCCCCchHHHHHHH
Q 009198 435 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIP-NCEPCR-PLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSG 511 (540)
Q Consensus 435 v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~-~~~~~~~~~-l~~aG~~~~~~~~~~~~ga~~sg 511 (540)
++..|+++|+....+++....+.+|.......+.|.+.+ +..... ..++.|+.| +||||+++...|+++|+||..||
T Consensus 369 ~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG 448 (501)
T KOG0029|consen 369 AMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSG 448 (501)
T ss_pred HHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhh
Confidence 999999999943334444434444443334445555433 222111 334677777 99999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q 009198 512 KLCAQAIVQDYVL 524 (540)
Q Consensus 512 ~~aA~~v~~~l~~ 524 (540)
+++|..|+..+..
T Consensus 449 ~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 449 LRAASDILDSLIE 461 (501)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999995
No 20
>PLN02568 polyamine oxidase
Probab=100.00 E-value=1.5e-32 Score=283.17 Aligned_cols=446 Identities=18% Similarity=0.230 Sum_probs=252.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-----CceEEEecCCCCCcceeeeccCCCCeeeccceeeccCc-ccHHHHHHhcC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAG-----HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY-PNIQNLFGELG 129 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g-----~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~-~~~~~l~~~lg 129 (540)
...||+|||||++||+||+.|++.| ++|+|+|++.++||++.+.. ..|+.+|.|++++.+.. ..+.++++++|
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~~~~~~~l~~~~g 82 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIGGSPVYKIAQEAG 82 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCCCCHHHHHHHHhC
Confidence 3579999999999999999999887 89999999999999999976 56889999999998753 45889999999
Q ss_pred CCcccc-cccccceeecCCCCCCcccccCCC--CCCC-chhHHH----HhhhcCC--CCChhHHHHhhhchhhhHhcCcc
Q 009198 130 INDRLQ-WKEHSMIFAMPNKPGEFSRFDFPE--VLPA-PLNGIL----AILRNNE--MLTWPEKVKFAIGLLPAIIGGQA 199 (540)
Q Consensus 130 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 199 (540)
+..... +...... .... .+...+ .++. ....+. .++.... ..+..+. .. .++.........
T Consensus 83 ~~~~~~~~~~~~~~------~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~d~~~~~~~~~~ 153 (539)
T PLN02568 83 SLESDEPWECMDGF------PDRP-KTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEV-DE-VDFVKLAAKAAR 153 (539)
T ss_pred CccccCcceecccc------cccc-eEEccCCcCCCHHHHHHHHHHHHHHHHHhhccccccccc-cc-ccccccchhccc
Confidence 854321 1110000 0000 000000 0110 011111 1111000 0000000 00 000000000000
Q ss_pred cccccCCCCHHHHHHHhCCCchhhhhc----------CCChHH-HHHHHHHHHhhc-cCCCCccchHHHHHHHHHHHhhh
Q 009198 200 YVEAQDGLTVQEWMRKQVQPSDLVREL----------GVPDRV-TTEVFIAMSKAL-NFINPDELSMQCILIALNRFLQE 267 (540)
Q Consensus 200 ~~~~~~~~s~~~~l~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~ 267 (540)
........++.+|+++.+.. .+..+ +..... ....+..+.... ...+...++...... ...+ ..
T Consensus 154 ~~~~~~~~Sl~~fl~~~l~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~-~~~~-~~ 229 (539)
T PLN02568 154 VCESGGGGSVGSFLRRGLDA--YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAA-ESEY-RM 229 (539)
T ss_pred hhccCCCCcHHHHHHHHHHH--HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccc-cCcc-ee
Confidence 00001234788888875210 00000 000000 011111111100 011112211110000 0000 00
Q ss_pred ccCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh----
Q 009198 268 KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL---- 343 (540)
Q Consensus 268 ~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~---- 343 (540)
..|. ...+.+| ++.|++.|++.+. +.+|+++++|++|...+++ +.|++.+|+++.||+||+|+|+.++..
T Consensus 230 ~~g~-~~~i~gG-~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~--v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~ 303 (539)
T PLN02568 230 FPGE-EITIAKG-YLSVIEALASVLP--PGTIQLGRKVTRIEWQDEP--VKLHFADGSTMTADHVIVTVSLGVLKAGIGE 303 (539)
T ss_pred cCCC-eEEECCc-HHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe--EEEEEcCCCEEEcCEEEEcCCHHHHhhcccc
Confidence 1122 3345555 7889999988774 3479999999999984433 358888998899999999999999885
Q ss_pred --cCCCCchhhHHHHHHhccCCcCeEEEEEEeccccccccCcceeecCCceeEEeccCc---------ccc----ccc--
Q 009198 344 --QLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSL---------TCK----EYY-- 406 (540)
Q Consensus 344 --ll~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------~~~----~~~-- 406 (540)
+.-.+.+|...+++++++.+..+.||++.|+++||.....+. +-+...++++.+. .|. .+.
T Consensus 304 ~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (539)
T PLN02568 304 DSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVA--KFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI 381 (539)
T ss_pred ccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccc--cccceeeeecccchhhhcccccchhhcccccccc
Confidence 233345677778999999999999999999999875311110 0011111100000 000 011
Q ss_pred CCCccEEEEEeec--cccccCCChHHHHHHHHHHHHHhCCCcccc-------------------ccccceEEEEEEecCC
Q 009198 407 NPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISA-------------------DQSKAKIVKYHVVKTP 465 (540)
Q Consensus 407 ~~~~~~~~~~~~~--~~~~~~~~~e~~~~~v~~~l~~~~p~~~~~-------------------~~~~~~~~~~~~~~~p 465 (540)
..+..++..+..+ +..+..++++++++.+++.|.++||..... ......++...|...|
T Consensus 382 ~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp 461 (539)
T PLN02568 382 HKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDP 461 (539)
T ss_pred CCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCC
Confidence 1234455444433 366778999999999999999999853210 0123445566777778
Q ss_pred Cc--eeccC-CCCCC-CCCCCCCCC-------------CCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Q 009198 466 RS--VYKTI-PNCEP-CRPLQRSPV-------------EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 523 (540)
Q Consensus 466 ~~--~~~~~-~~~~~-~~~~~~~~~-------------~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~ 523 (540)
++ .|.+. |+... ....++.|+ ++|||||++++..|+++|+||++||+|+|++|++.++
T Consensus 462 ~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 462 LFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred ccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 84 45544 34322 223334443 3799999999999999999999999999999999865
No 21
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=2.5e-32 Score=284.80 Aligned_cols=433 Identities=20% Similarity=0.225 Sum_probs=258.5
Q ss_pred EEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCC--cccccc
Q 009198 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN--DRLQWK 137 (540)
Q Consensus 60 v~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~--~~~~~~ 137 (540)
|||||||++||+||..|++.|++|+|||+++.+||+++++. .+|+.+|.|+|++... ..+.++++++|++ ..+.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~-~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMP-EALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccc-cHHHHHHHHcCCChhheEEEE
Confidence 68999999999999999999999999999999999999988 5899999999998642 3467788888853 223332
Q ss_pred cccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhh----hHh-----------c--Cccc
Q 009198 138 EHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLP----AII-----------G--GQAY 200 (540)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------~--~~~~ 200 (540)
..+..+.+....+. .+.+..........+..+.. .+...+....+....+.. ... . ....
T Consensus 79 ~~~~~~~~~~~~g~--~~~~~~~~~~~~~~l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (502)
T TIGR02734 79 PLDPFYRLCWEDGS--QLDVDNDQEELEAQIARFNP-GDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQL 155 (502)
T ss_pred ECCCceEEECCCCC--EEEecCCHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhh
Confidence 22211111111111 11111111100111111100 000001111100000000 000 0 0000
Q ss_pred ccccCCCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCC
Q 009198 201 VEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNP 280 (540)
Q Consensus 201 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~ 280 (540)
.......++.+|+++. +.....+.++.. .....+.++++.+....... +... .+ ...++.||
T Consensus 156 ~~~~~~~s~~~~~~~~-----------~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~~---~~~~-~~-g~~~~~gG- 217 (502)
T TIGR02734 156 LALLAWRSLYSKVARF-----------FSDERLRQAFSF-HALFLGGNPFRTPSIYALIS---ALER-EW-GVWFPRGG- 217 (502)
T ss_pred hhccCcCCHHHHHHhh-----------cCCHHHHHHhcc-cceeeccCcccchHHHHHHH---HHHh-hc-eEEEcCCC-
Confidence 1122346777777765 333333333321 11233456666554433221 1111 12 24467777
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCCCCchhhHHHHHHh
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLE 359 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~-~~~~ll~~~~~~~~~~~~~~ 359 (540)
...+++.|.+.++++|++|+++++|++|.. +++++++|++.+|+++.||+||+|++.. +...|++....+....++++
T Consensus 218 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~ 296 (502)
T TIGR02734 218 TGALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLS 296 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccc
Confidence 789999999999999999999999999987 4567778999999889999999999974 44567766544434445555
Q ss_pred ccCC-cCeEEEEEEec---cccccc-cCcceeecC--------------C-ceeEEe-ccCcccccccCCCccEEEE-Ee
Q 009198 360 KLVG-VPVINIHIWFD---RKLKNT-YDHLLFSRS--------------S-LLSVYA-DMSLTCKEYYNPNQSMLEL-VF 417 (540)
Q Consensus 360 ~~~~-~~~~~i~l~~~---~~~~~~-~~~~~~~~~--------------~-~~~~~~-~~s~~~~~~~~~~~~~~~~-~~ 417 (540)
+..+ .+.+++++.++ +++... ..++.+..+ + -..++. .++..+++.+|+|.+.+.+ +.
T Consensus 297 ~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~ 376 (502)
T TIGR02734 297 RKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAP 376 (502)
T ss_pred cCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEe
Confidence 5554 46888899998 443211 112222110 0 112232 2345567888888776543 34
Q ss_pred ecc-----ccccCCChHHHHHHHHHHHHHh-CCCccccccccceEEEEEEecCCCcee-----------ccCCC---CCC
Q 009198 418 APA-----EEWISCSDSEIIDATMKELAKL-FPDEISADQSKAKIVKYHVVKTPRSVY-----------KTIPN---CEP 477 (540)
Q Consensus 418 ~~~-----~~~~~~~~e~~~~~v~~~l~~~-~p~~~~~~~~~~~~~~~~~~~~p~~~~-----------~~~~~---~~~ 477 (540)
++. .+|... .+++.+++++.|++. +|+.. ..+ ......+|.++. +..+. ...
T Consensus 377 ~~~~~~~~~~~~~~-k~~~~~~il~~l~~~~~p~l~------~~i-~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~ 448 (502)
T TIGR02734 377 VPHLGTADVDWSVE-GPRYRDRILAYLEERAIPGLR------DRI-VVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAW 448 (502)
T ss_pred CCCCCCCCCCcHHH-HHHHHHHHHHHHHHhcCCChh------Hhe-EEEEEcCHHHHHHhcCCCCccccchhhchhhccc
Confidence 333 235332 467999999999998 98742 233 445567777542 21111 122
Q ss_pred CCCC-CCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhHHH
Q 009198 478 CRPL-QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLA 526 (540)
Q Consensus 478 ~~~~-~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~~~~ 526 (540)
++|. .+++++|||+||+++.++ +|+.+|++||+.||++|+.+++...
T Consensus 449 ~rp~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 449 FRPHNRDRKIDNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CCCCCCCCCCCCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccCCC
Confidence 3443 357899999999999886 7999999999999999998766544
No 22
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=1.1e-31 Score=278.49 Aligned_cols=430 Identities=19% Similarity=0.292 Sum_probs=255.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccC----cc-cHHHHHHhcCCCc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA----YP-NIQNLFGELGIND 132 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~----~~-~~~~l~~~lgl~~ 132 (540)
+||||||||++||+||..|++.|++|+||||+..+||+++++. .+|+.+|.|.|++.+. .. .+.+.+..++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 5899999999999999999999999999999999999999987 5899999999987643 22 2455666666432
Q ss_pred ccccccccceeecCCCCCCcccccCCCC-----------CCCchhHHHHhhhcCC----------CCChhHHHHhhhchh
Q 009198 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEV-----------LPAPLNGILAILRNNE----------MLTWPEKVKFAIGLL 191 (540)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 191 (540)
..........+..++ +. .+.+... .|.....+..+++... ...+..... +.
T Consensus 80 ~~~~~~~~~~~~~~~--g~--~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 151 (493)
T TIGR02730 80 ETIPDPVQIHYHLPN--GL--NVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRY----LF 151 (493)
T ss_pred cccCCCccEEEECCC--Ce--eEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHH----HH
Confidence 211111111121111 10 0111111 1111111111111000 000000000 00
Q ss_pred hhHhcCcc---cccccCCCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhc
Q 009198 192 PAIIGGQA---YVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK 268 (540)
Q Consensus 192 ~~~~~~~~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 268 (540)
..+..... ........++.+++++. +.....+.++..........++.+.+.......+. ...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~~~ 217 (493)
T TIGR02730 152 RVFFKHPLACLGLAKYLPQNAGDIARRY-----------IRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS---DRH 217 (493)
T ss_pred HHHhhchhhhhHHHHHhhccHHHHHHHh-----------cCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc---ccc
Confidence 00000000 00001124566666655 33333344444322222222334555433322211 111
Q ss_pred cCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHH-HHhhcCCC
Q 009198 269 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPE 347 (540)
Q Consensus 269 ~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~-~~~~ll~~ 347 (540)
. ..+.++.|| ...++++|.+.++++|++|+++++|++|.. +++++.+|++.+|+++.||+||+|++++ ++.+|+++
T Consensus 218 ~-~g~~~~~gG-~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~ 294 (493)
T TIGR02730 218 Y-GGINYPKGG-VGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKA 294 (493)
T ss_pred c-ceEecCCCh-HHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCc
Confidence 2 245678887 689999999999999999999999999987 5677889999999889999999998775 55568877
Q ss_pred CchhhHHHHHHhccCCc-CeEEEEEEecccccc---ccCcceeec-----CCceeEEec-cCcccccccCCCccEEEEEe
Q 009198 348 NWKEMAYFKRLEKLVGV-PVINIHIWFDRKLKN---TYDHLLFSR-----SSLLSVYAD-MSLTCKEYYNPNQSMLELVF 417 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~---~~~~~~~~~-----~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~ 417 (540)
...+......+++..+. +.+++++.++++..+ ...++++.. .....++.. ++...++.+|++.+++.+..
T Consensus 295 ~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~ 374 (493)
T TIGR02730 295 ENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFT 374 (493)
T ss_pred cccchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEec
Confidence 65554444555555554 588999999985422 111222211 111122322 34456778888888765432
Q ss_pred -eccccccCCC-------hHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCce----------eccCCCC---C
Q 009198 418 -APAEEWISCS-------DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV----------YKTIPNC---E 476 (540)
Q Consensus 418 -~~~~~~~~~~-------~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~---~ 476 (540)
.+...|..++ .+++.+++++.|++++|+.. .++ .+....+|.++ |+..+.. .
T Consensus 375 ~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~------~~I-~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~ 447 (493)
T TIGR02730 375 PSSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLD------SAI-DYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPG 447 (493)
T ss_pred CCChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCChh------hcE-EEEEeeCchhHHHHhCCCCcccCCcccccccc
Confidence 2234454322 35688999999999999742 233 35556677754 2111111 0
Q ss_pred CCC-CCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 009198 477 PCR-PLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 522 (540)
Q Consensus 477 ~~~-~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l 522 (540)
..+ +..+++++|||+||+++.++ +|+.+|+.||+.||++|+.++
T Consensus 448 ~~~~~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 448 LLPMPFNRTAIPGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred cccCCCCCCCCCCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 111 34678899999999999886 799999999999999999864
No 23
>PLN03000 amine oxidase
Probab=100.00 E-value=8.5e-32 Score=282.45 Aligned_cols=429 Identities=18% Similarity=0.223 Sum_probs=253.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCC---CCeeeccceeeccCccc-HHHHHHhcCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD---GDWYETGLHIFFGAYPN-IQNLFGELGI 130 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~---g~~~d~G~~~~~~~~~~-~~~l~~~lgl 130 (540)
....+|+|||||++||++|+.|.+.|++|+|+|+++++||++.+....+ ++.+|.|++|+.+...+ +..+++++|+
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl 261 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGS 261 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCC
Confidence 3568999999999999999999999999999999999999999876322 57799999999987664 5667899998
Q ss_pred CcccccccccceeecCCCCCCcccccCCCCCCCchh-HHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCH
Q 009198 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (540)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (540)
+.... .....++... +.. .+.... .+...+. .. .+....+..+. . ....+.++
T Consensus 262 ~l~~~-~~~~~ly~~~---Gk~--------v~~~~~~~ve~~fn--~l---Ld~~~~lr~l~---~------~~~~D~SL 315 (881)
T PLN03000 262 SLYKV-RDKCPLYRVD---GKP--------VDPDVDLKVEVAFN--QL---LDKASKLRQLM---G------DVSMDVSL 315 (881)
T ss_pred ceeec-CCCCeEEEeC---CcC--------CchhhhhhHHHHHH--HH---HHHHHHHHHHh---c------ccCcCCcH
Confidence 74321 1111122111 111 010000 0000000 00 00000000000 0 01113445
Q ss_pred HHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCccchhHHH
Q 009198 210 QEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIV 289 (540)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~ 289 (540)
.++++... ... ...+... ...++.+....+.+.....++..... ..........+.......|| ++.|+++|+
T Consensus 316 g~aLe~~~---~~~-g~~~t~e-~~~Ll~w~lanLE~~~as~ls~LSl~-~wdqd~~~e~~G~~~~v~GG-~~~LieaLa 388 (881)
T PLN03000 316 GAALETFR---QVS-GNDVATE-EMGLFNWHLANLEYANAGLVSKLSLA-FWDQDDPYDMGGDHCFLPGG-NGRLVQALA 388 (881)
T ss_pred HHHHHHHH---HHH-cccCCHH-HHHHHHHHHHHHhcccccCHHHHHHH-HhhhcccccCCCceEEeCCC-HHHHHHHHH
Confidence 44333210 000 0011111 11223333322222222222211111 00000001123334456666 789999988
Q ss_pred HHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHh--hcCCCCchhhHHHHHHhccCCcCeE
Q 009198 290 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVI 367 (540)
Q Consensus 290 ~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~--~ll~~~~~~~~~~~~~~~~~~~~~~ 367 (540)
+.+ .|+++++|++|...+++ + .|++.+ +++.||+||+|+|..++. .+...+.+|....+++.++.+..+.
T Consensus 389 ~~L-----~I~Ln~~Vt~I~~~~dg-V-~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~ 460 (881)
T PLN03000 389 ENV-----PILYEKTVQTIRYGSNG-V-KVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLN 460 (881)
T ss_pred hhC-----CcccCCcEEEEEECCCe-E-EEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceE
Confidence 766 49999999999985444 3 466654 489999999999999988 3333344677788999999999999
Q ss_pred EEEEEecccccccc-Cccee--ecCCceeEEeccCcccccccC-CCccEEEEEeec--cccccCCChHHHHHHHHHHHHH
Q 009198 368 NIHIWFDRKLKNTY-DHLLF--SRSSLLSVYADMSLTCKEYYN-PNQSMLELVFAP--AEEWISCSDSEIIDATMKELAK 441 (540)
Q Consensus 368 ~i~l~~~~~~~~~~-~~~~~--~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~e~~~~~v~~~l~~ 441 (540)
||++.|+++||+.. +.+.+ ........++. +..+.+ .+..++..+..+ +..|..++++++++.++++|.+
T Consensus 461 KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~----f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrk 536 (881)
T PLN03000 461 KVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFL----FYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRG 536 (881)
T ss_pred EEEEEeCCccccCCCCceeEEecCCCCCceeEE----EeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHH
Confidence 99999999999753 22211 11111111110 111222 233444443332 3567788999999999999999
Q ss_pred hCCCccccccccceEEEEEEecCCCc--eeccC-CCCC-CCCCCCCCCC--CCeEEecccccCCCCCchHHHHHHHHHHH
Q 009198 442 LFPDEISADQSKAKIVKYHVVKTPRS--VYKTI-PNCE-PCRPLQRSPV--EGFYLAGDYTKQKYLASMEGAVLSGKLCA 515 (540)
Q Consensus 442 ~~p~~~~~~~~~~~~~~~~~~~~p~~--~~~~~-~~~~-~~~~~~~~~~--~~l~~aG~~~~~~~~~~~~ga~~sg~~aA 515 (540)
+|+......+.....+...|..+|++ .|.+. ++.. .....+.+|+ ++|||||++++..|+++|+||++||+|||
T Consensus 537 ifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA 616 (881)
T PLN03000 537 IYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREA 616 (881)
T ss_pred HhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHH
Confidence 99731110011123455667777874 34433 3422 2233445564 58999999999989999999999999999
Q ss_pred HHHHHHHhHHHhh
Q 009198 516 QAIVQDYVLLAAR 528 (540)
Q Consensus 516 ~~v~~~l~~~~~~ 528 (540)
.+|++.++.....
T Consensus 617 ~eIl~~l~~~~~~ 629 (881)
T PLN03000 617 ANMAQSAKARGIR 629 (881)
T ss_pred HHHHHHhhhccCC
Confidence 9999999876554
No 24
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2e-32 Score=261.58 Aligned_cols=432 Identities=22% Similarity=0.262 Sum_probs=260.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCCCCcceeeeccCCCCeeeccceeecc-CcccHHHHHHhcCCCc
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG-AYPNIQNLFGELGIND 132 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~ 132 (540)
...++|||||||+|||+||.+|.+.|+ +|+|+|+.+++|||+.++.. .+.++|+|++|+++ ....+.++.+++|...
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~-~d~~ielGAqwihG~~gNpVY~la~~~g~~~ 97 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPF-ADGVIELGAQWIHGEEGNPVYELAKEYGDLK 97 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEc-CCCeEeecceeecCCCCChHHHHHHHhCccc
Confidence 466799999999999999999998765 89999999999999999874 44499999999998 4445899999888211
Q ss_pred ccccccccceeecCCCCCCcccccCCCCCCCchh-HHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHH
Q 009198 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (540)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 211 (540)
.+ ......+. +. ..........+.... .+..+..... .. .....-..+..|+..
T Consensus 98 ~~--~~tg~~~~----~~-~~~~~~g~~V~~~~~~~~~~~~~~~~---------------~~---~r~~~~~~~~~SvG~ 152 (498)
T KOG0685|consen 98 LL--EVTGPAYV----DN-FHTRSNGEVVPEELLDELNEITVTLS---------------DK---LREAEIAHDEGSVGE 152 (498)
T ss_pred ee--ccCCcccc----ce-eEEEecCccCcHHHHHHHHHHHHhhh---------------hh---cccccccCccccHHH
Confidence 11 00000000 00 000000011111111 1111111000 00 000001134567888
Q ss_pred HHHHhCCCchhhhhcC------CChHHHHHHHHHHHhhccCC----CCccchHHHHHHHHHHHhhhccCc-ceeeecCCC
Q 009198 212 WMRKQVQPSDLVRELG------VPDRVTTEVFIAMSKALNFI----NPDELSMQCILIALNRFLQEKHGS-KMAFLDGNP 280 (540)
Q Consensus 212 ~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~~~~~~~~~~g~-~~~~~~gg~ 280 (540)
++... +++.+. ....+..+.+..+...-..+ +.++++.... ..+.. ..|. .......|
T Consensus 153 ~ln~~-----~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~----~ey~~-~~ge~~~~~~~kG- 221 (498)
T KOG0685|consen 153 YLNSE-----FWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRAL----LEYTE-CPGEELLIWNKKG- 221 (498)
T ss_pred HHHHH-----HHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhc----cceee-cCchhhheechhH-
Confidence 88763 222211 12222333333333222212 2223332211 11111 1110 11122222
Q ss_pred CccchhHHHHHHHHc----C--cEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhc---CCCCchh
Q 009198 281 PERLCLPIVEHIQSL----G--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ---LPENWKE 351 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~----G--~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~l---l~~~~~~ 351 (540)
+.++.+.|++.+.+. | .+++++++|.+|...+.+.+ .|++.||+.+.||+||+++...++.+- +..+.+|
T Consensus 222 y~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP 300 (498)
T KOG0685|consen 222 YKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLP 300 (498)
T ss_pred HHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCC
Confidence 456666666554432 2 35667799999998555665 599999999999999999999888772 2233467
Q ss_pred hHHHHHHhccCCcCeEEEEEEeccccccc-cCcc--eeecCCc---eeE-EeccCc-ccccccCCCccEEEEEeecc--c
Q 009198 352 MAYFKRLEKLVGVPVINIHIWFDRKLKNT-YDHL--LFSRSSL---LSV-YADMSL-TCKEYYNPNQSMLELVFAPA--E 421 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~--~~~~~~~---~~~-~~~~s~-~~~~~~~~~~~~~~~~~~~~--~ 421 (540)
.....+|+++.+.++.|||+.|.+++|+. ...+ ++.++.. .+. .+.... ......+...++++.++++. .
T Consensus 301 ~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~ 380 (498)
T KOG0685|consen 301 AEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREAR 380 (498)
T ss_pred HHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcce
Confidence 78899999999999999999999999976 2222 2333221 000 000000 00000112225666666553 5
Q ss_pred cccCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCC--ceeccCC-CCC--------CCCCCC-CCCCCCe
Q 009198 422 EWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR--SVYKTIP-NCE--------PCRPLQ-RSPVEGF 489 (540)
Q Consensus 422 ~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~-~~~--------~~~~~~-~~~~~~l 489 (540)
...+++||++++.+...|++++++..-+ .+.++++..|...|+ +.|+|.. +.. ...|.. .+.-+.|
T Consensus 381 ~me~lsdEev~e~~~~~lr~fl~n~~iP--~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I 458 (498)
T KOG0685|consen 381 HMETLSDEEVLEGLTKLLRKFLKNPEIP--KPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQI 458 (498)
T ss_pred ehhhCCHHHHHHHHHHHHHHhcCCCCCC--CchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceE
Confidence 5678999999999999999999863322 456788999999998 5676644 211 112221 2345689
Q ss_pred EEecccccCCCCCchHHHHHHHHHHHHHHHHHHhHHH
Q 009198 490 YLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLA 526 (540)
Q Consensus 490 ~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~~~~ 526 (540)
-|||++++..++++++||++||+|.|+++++.+....
T Consensus 459 ~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~~ 495 (498)
T KOG0685|consen 459 LFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESST 495 (498)
T ss_pred EEccccccccceehhhhhHHhhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999776543
No 25
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=2.7e-31 Score=279.28 Aligned_cols=428 Identities=18% Similarity=0.197 Sum_probs=252.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCC-C--CeeeccceeeccCccc-HHHHHHhcCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-G--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~-g--~~~d~G~~~~~~~~~~-~~~l~~~lgl 130 (540)
....+|+|||||++||+||+.|++.|++|+|+|++.++||++.+....+ + ..+|.|++++.+...+ +..+++++|+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl 315 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGL 315 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCC
Confidence 4567999999999999999999999999999999999999998876332 2 3689999999876554 7789999998
Q ss_pred CcccccccccceeecCCCCCCcccccCCCCCCCchhH-HHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCH
Q 009198 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNG-ILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (540)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (540)
+.... .....++. . .+...... .+..... ...++. ...+.+. .. ... ....+.++
T Consensus 316 ~~~~~-~~~~~~~~-~--dG~~~~~~----~~~~v~~~f~~lL~------~~~klr~------~~---~~~-~~~~D~SL 371 (808)
T PLN02328 316 PLHKV-RDICPLYL-P--DGKAVDAE----IDSKIEASFNKLLD------RVCKLRQ------AM---IEE-VKSVDVNL 371 (808)
T ss_pred ceEec-CCCceEEe-C--CCcCcchh----hhhhHHHHHHHHHH------HHHHHHH------hh---hhc-ccccCcCH
Confidence 64321 11111111 1 11110000 1111100 001110 0000000 00 000 01124688
Q ss_pred HHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCccchhHHH
Q 009198 210 QEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIV 289 (540)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~ 289 (540)
.++++.+. ... ..... .....++.+.+..+.+.....++........... ....+....+..|| +..|+++|+
T Consensus 372 g~~le~~~---~~~-~~~~~-~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~-~~e~~G~~~~v~GG-~~~Li~aLa 444 (808)
T PLN02328 372 GTALEAFR---HVY-KVAED-PQERMLLNWHLANLEYANASLMSNLSMAYWDQDD-PYEMGGDHCFIPGG-NDTFVRELA 444 (808)
T ss_pred HHHHHHHh---hhh-ccCCC-HHHHHHHHHHHHHHhccchhhHHHHHhhhhhccc-cccCCCeEEEECCc-HHHHHHHHH
Confidence 88886440 000 01111 1122333333332222222222211110000000 01122334555666 788888888
Q ss_pred HHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCCchhhHHHHHHhccCCcCeE
Q 009198 290 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVI 367 (540)
Q Consensus 290 ~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~--ll~~~~~~~~~~~~~~~~~~~~~~ 367 (540)
+.+ .|+++++|++|...+++ + .| +.+|+++.||+||+|+|..++.. +.-.+.+|....++++++.+..+.
T Consensus 445 ~~L-----~I~ln~~V~~I~~~~dg-V-~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~ 516 (808)
T PLN02328 445 KDL-----PIFYERTVESIRYGVDG-V-IV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLN 516 (808)
T ss_pred hhC-----CcccCCeeEEEEEcCCe-E-EE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceE
Confidence 765 48999999999985444 3 34 45777899999999999999874 222334667788999999999999
Q ss_pred EEEEEecccccccc-Ccce--eecCCcee---EEeccCcccccccCCCccEEEEEeec--cccccCCChHHHHHHHHHHH
Q 009198 368 NIHIWFDRKLKNTY-DHLL--FSRSSLLS---VYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKEL 439 (540)
Q Consensus 368 ~i~l~~~~~~~~~~-~~~~--~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~v~~~l 439 (540)
||++.|+++||... +.+. ..+....+ ++.+.+ ...+..++..+..+ ...+..++++++++.+++.|
T Consensus 517 KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s------~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~L 590 (808)
T PLN02328 517 KVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYS------SVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQIL 590 (808)
T ss_pred EEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCC------CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHH
Confidence 99999999999753 2221 12111111 111111 11233444443332 25566789999999999999
Q ss_pred HHhCCCccccccccceEEEEEEecCCCc--eeccC-CCCC-CCCCCCCCC--CCCeEEecccccCCCCCchHHHHHHHHH
Q 009198 440 AKLFPDEISADQSKAKIVKYHVVKTPRS--VYKTI-PNCE-PCRPLQRSP--VEGFYLAGDYTKQKYLASMEGAVLSGKL 513 (540)
Q Consensus 440 ~~~~p~~~~~~~~~~~~~~~~~~~~p~~--~~~~~-~~~~-~~~~~~~~~--~~~l~~aG~~~~~~~~~~~~ga~~sg~~ 513 (540)
.++|+......+.......+.|...|++ .|.+. ++.. ...+.+..| .++|||||++++..|+++|+||++||+|
T Consensus 591 r~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlR 670 (808)
T PLN02328 591 RGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMR 670 (808)
T ss_pred HHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHH
Confidence 9999731110011223455566666664 34332 3321 122333455 4689999999998888999999999999
Q ss_pred HHHHHHHHHhHHHh
Q 009198 514 CAQAIVQDYVLLAA 527 (540)
Q Consensus 514 aA~~v~~~l~~~~~ 527 (540)
+|.+|+..++....
T Consensus 671 AA~eIl~~~~~~~~ 684 (808)
T PLN02328 671 EAANILRVARRRSL 684 (808)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999887654
No 26
>PLN02976 amine oxidase
Probab=100.00 E-value=6.5e-31 Score=282.10 Aligned_cols=429 Identities=18% Similarity=0.185 Sum_probs=252.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcc--------c-HHHHHH
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP--------N-IQNLFG 126 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~--------~-~~~l~~ 126 (540)
..+||+|||||++|+++|+.|.+.|++|+|||+++.+||++.+.....++.+|.|++++.+... + +..+++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ 771 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA 771 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence 4579999999999999999999999999999999999999888654467889999999986432 2 334678
Q ss_pred hcCCCcccccccccceeecCCCCCCcccccCCCCCCCch-hHHHHhhhcCCCCChhHHHHhhhchhhhHhcC-ccccccc
Q 009198 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPL-NGILAILRNNEMLTWPEKVKFAIGLLPAIIGG-QAYVEAQ 204 (540)
Q Consensus 127 ~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 204 (540)
++|+........ ...+.. .....++... ..+...+. .+....... .......
T Consensus 772 qlGl~l~~~~~~-~~~yd~----------~~G~~V~~e~~~~v~~~fn---------------~lld~~~~~~~~~g~~a 825 (1713)
T PLN02976 772 QLGLELTVLNSD-CPLYDV----------VTGEKVPADLDEALEAEYN---------------SLLDDMVLLVAQKGEHA 825 (1713)
T ss_pred hcCCccccccCC-CceeEc----------cCCcCCCHHHHHHHHHHHH---------------HHHHHHHHHHhhcccCc
Confidence 888775321110 000100 0001111111 01111100 000000000 0000001
Q ss_pred CCCCHHHHHHHhCCCch-------------------hhhh-------cCCC--------hHHHHHHHHHHHhhc---cCC
Q 009198 205 DGLTVQEWMRKQVQPSD-------------------LVRE-------LGVP--------DRVTTEVFIAMSKAL---NFI 247 (540)
Q Consensus 205 ~~~s~~~~l~~~~~~~~-------------------~~~~-------~~~~--------~~~~~~~~~~~~~~~---~~~ 247 (540)
...++.++|........ +... .... ....+.++..++... .+.
T Consensus 826 ~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa 905 (1713)
T PLN02976 826 MKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAA 905 (1713)
T ss_pred cCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccC
Confidence 13455555543210000 0000 0000 001111222222222 123
Q ss_pred CCccchHHHHHHHHHHHhhhccCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEcc--------CCcEEEE
Q 009198 248 NPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--------DGTVKNF 319 (540)
Q Consensus 248 ~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~--------~~~~~~V 319 (540)
+++++++..... ...+. .++.....+.|| +..|++.|++.+ .|++|++|++|.... ++.-+.|
T Consensus 906 ~L~eVSl~~~~q--d~~y~-~fgG~~~rIkGG-YqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtV 976 (1713)
T PLN02976 906 LLKEVSLPYWNQ--DDVYG-GFGGAHCMIKGG-YSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKV 976 (1713)
T ss_pred CHHHhhhhhhhc--ccccc-cCCCceEEeCCC-HHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEE
Confidence 445555432110 00011 112233345566 788888888754 599999999998731 1222458
Q ss_pred EEcCCcEEEcCEEEEccCHHHHh--hcCCCCchhhHHHHHHhccCCcCeEEEEEEecccccccc-Cccee--ecCCceeE
Q 009198 320 LLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-DHLLF--SRSSLLSV 394 (540)
Q Consensus 320 ~~~~G~~i~a~~VI~A~~~~~~~--~ll~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~~~--~~~~~~~~ 394 (540)
++.+|+++.||+||+|+|+.++. .+...+.+|.....++.++.+..+.||++.|+++||+.. +.+.. ........
T Consensus 977 tTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~ 1056 (1713)
T PLN02976 977 STSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQ 1056 (1713)
T ss_pred EECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCce
Confidence 88999889999999999999987 344445577778889999999999999999999999753 22211 11111111
Q ss_pred EeccCcccccccCCCccEEEEEeec--cccccCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCc--eec
Q 009198 395 YADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRS--VYK 470 (540)
Q Consensus 395 ~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~--~~~ 470 (540)
++. .++...+.+..++..++.+ +..+..++++++++.+++.|.++||....+. ...+....|...|++ .|.
T Consensus 1057 ~~~---~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPd--Pv~~vvTrWssDPySrGSYS 1131 (1713)
T PLN02976 1057 CFM---FWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPD--PVASVVTDWGRDPFSYGAYS 1131 (1713)
T ss_pred EEE---eccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccC--cceeEEecCCCCCCcCcccc
Confidence 110 1111122344444444433 2556788999999999999999998532222 234556677777884 454
Q ss_pred cC-CCCC-CCCCCCCCCCCC-eEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhH
Q 009198 471 TI-PNCE-PCRPLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 524 (540)
Q Consensus 471 ~~-~~~~-~~~~~~~~~~~~-l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~~ 524 (540)
+. |+.. .....+..|+.| |||||++++..|+++|+||++||+|||++|+..|.+
T Consensus 1132 y~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1132 YVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 43 4432 223345567665 999999999999999999999999999999999865
No 27
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.97 E-value=8.4e-32 Score=277.90 Aligned_cols=429 Identities=29% Similarity=0.382 Sum_probs=232.8
Q ss_pred hHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCC-CCeeeccceeeccCcccHHHHHHhcCCCcccccccccceeec
Q 009198 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-GDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAM 145 (540)
Q Consensus 67 ~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~ 145 (540)
++||+||++|++.|++|+|||+++++||++.++.... |+.+|.|++++...+..+..++.++++...............
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSLETFPFPQIPFV 80 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTEEEEEESSEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccccccccccceee
Confidence 6999999999999999999999999999999988553 899999999999888889999999997543332222111110
Q ss_pred CCCCCCcccccCCCCCCCchhHH---HHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHHHhCCCchh
Q 009198 146 PNKPGEFSRFDFPEVLPAPLNGI---LAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDL 222 (540)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 222 (540)
................+...... ........ .+...........................++.+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 152 (450)
T PF01593_consen 81 YWPFGDGRPPWPPSQLPRNLNEFAALISLARFFR--LLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQ------ 152 (450)
T ss_dssp EEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred eccccccccccccccccccccchhhhhhcccccc--ccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhh------
Confidence 00000000000000000000000 00000000 00000000000000000000000011112333333222
Q ss_pred hhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh-----hccCcceeeecCCCCccchhHHHHHHHHcCc
Q 009198 223 VRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-----EKHGSKMAFLDGNPPERLCLPIVEHIQSLGG 297 (540)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-----~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~ 297 (540)
..........+...............+.......+..... ......+.... ..+...+...+...|+
T Consensus 153 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~g~ 224 (450)
T PF01593_consen 153 ----SFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGM----GGLSLALALAAEELGG 224 (450)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEET----TTTHHHHHHHHHHHGG
T ss_pred ----hhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecc----cchhHHHHHHHhhcCc
Confidence 1111111111222222221122222222211111111100 11112222222 2344455555555678
Q ss_pred EEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh--cCCCCchhhHHHHHHhccCCcCeEEEEEEecc
Q 009198 298 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIWFDR 375 (540)
Q Consensus 298 ~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~--ll~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 375 (540)
+|+++++|++|+. +++++ .|++.+|+++.||+||+|+|...+.+ +.|. .+....++++++++.+..+|++.|++
T Consensus 225 ~i~l~~~V~~I~~-~~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~--l~~~~~~a~~~~~~~~~~~v~l~~~~ 300 (450)
T PF01593_consen 225 EIRLNTPVTRIER-EDGGV-TVTTEDGETIEADAVISAVPPSVLKNILLLPP--LPEDKRRAIENLPYSSVSKVFLGFDR 300 (450)
T ss_dssp GEESSEEEEEEEE-ESSEE-EEEETTSSEEEESEEEE-S-HHHHHTSEEEST--SHHHHHHHHHTEEEEEEEEEEEEESS
T ss_pred eeecCCcceeccc-ccccc-ccccccceEEecceeeecCchhhhhhhhhccc--ccccccccccccccCcceeEEEeeec
Confidence 9999999999998 44555 58899998999999999999999895 4443 45556778889999999999999999
Q ss_pred cccccc---CcceeecC-CceeEEeccCcccccccCCCccEEEEEeecc-ccccCCChHHHHHHHHHHHHHhCCCccccc
Q 009198 376 KLKNTY---DHLLFSRS-SLLSVYADMSLTCKEYYNPNQSMLELVFAPA-EEWISCSDSEIIDATMKELAKLFPDEISAD 450 (540)
Q Consensus 376 ~~~~~~---~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~v~~~l~~~~p~~~~~~ 450 (540)
++|... ..+++.+. .....+.+.+.. ... +++..++..+..+. ..|..++++++++.++++|.+++|....++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~ 378 (450)
T PF01593_consen 301 PFWPPDIDFFGILYSDGFSPIGYVSDPSKF-PGR-PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPD 378 (450)
T ss_dssp GGGGSTTTESEEEEESSTSSEEEEEEECCT-TSC-TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGE
T ss_pred ccccccccccceecccCccccccccccccC-ccc-ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccccccc
Confidence 999763 23334433 222222222211 111 22333333333333 567889999999999999999999522222
Q ss_pred cccceEEEEEEecCCC--ceeccCCCCCC--CCCCCCCCC-CCeEEecccccCCCCCchHHHHHHHHHHHHHHH
Q 009198 451 QSKAKIVKYHVVKTPR--SVYKTIPNCEP--CRPLQRSPV-EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 519 (540)
Q Consensus 451 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~--~~~~~~~~~-~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~ 519 (540)
+. .+....|...+. +.|.+.+.... .++..++|+ +|||||||++.+.+.++++||+.||++||++||
T Consensus 379 ~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 379 PI--DITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp ES--EEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cc--cccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 11 233344444343 33433333222 455566777 699999999999887899999999999999996
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.95 E-value=3.1e-26 Score=215.50 Aligned_cols=424 Identities=19% Similarity=0.235 Sum_probs=274.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCc--eEEEecCCCCCcceeeeccCCCCeeeccceeeccCcc---cHHHHHHhcC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHK--PLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP---NIQNLFGELG 129 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~--v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~lg 129 (540)
...++|+|||||++||++||+|++++.+ |+|+|+.+++||.+.+....+++.+|.|++.+.+..+ .+.+++.++|
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG 88 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence 4678999999999999999999999765 5679999999999999666899999999999987666 5889999999
Q ss_pred CCcccccccccceeecCCCCCCcccccCC-CCCCCchhHHHH----hhhcCCCCChhHHHHhhhchhhhHhcCccccccc
Q 009198 130 INDRLQWKEHSMIFAMPNKPGEFSRFDFP-EVLPAPLNGILA----ILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQ 204 (540)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (540)
+++.+...+.+. +....++.+. +.++.....+.. .+... .-+-...++....+ ...-...
T Consensus 89 l~~e~~~i~~~~-------paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~---~k~L~~a~l~e~fr-----~~~~~~~ 153 (491)
T KOG1276|consen 89 LEDELQPIDISH-------PAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPF---GKPLLEAFLRELFR-----KKVSDPS 153 (491)
T ss_pred ccceeeecCCCC-------hhhhheeeccCcccccCCcccccccccccCcc---cchhHHHHHhhhcc-----ccCCCCC
Confidence 986543322211 1001111111 111110001100 00000 00000000000000 0001234
Q ss_pred CCCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcc------------
Q 009198 205 DGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSK------------ 272 (540)
Q Consensus 205 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~------------ 272 (540)
.++|+.+|.+++ +++++.+..+++++.++++.++.++|+...+..+... +..+|+.
T Consensus 154 ~dESV~sF~~Rr-----------fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~-Eqk~Gsi~~G~i~~~~~~~ 221 (491)
T KOG1276|consen 154 ADESVESFARRR-----------FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKV-EQKHGSIILGTIRAKFARK 221 (491)
T ss_pred ccccHHHHHHHh-----------hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHH-HHhccchhHHHHHHHHHhh
Confidence 578999999998 7889999999999999999999999998776654331 2223321
Q ss_pred -------------------eeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCC-cEEEEEEcCCc-EEEcCE
Q 009198 273 -------------------MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGN-VIDGDA 331 (540)
Q Consensus 273 -------------------~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~-~~~~V~~~~G~-~i~a~~ 331 (540)
+.-.+|| .+-+.+++.+.|.+..+.|.+.-++..+.....+ ....++..+++ .+..++
T Consensus 222 ~~k~~e~~~~~~~~~e~~~~~sl~gG-le~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~ 300 (491)
T KOG1276|consen 222 RTKKAETALSAQAKKEKWTMFSLKGG-LETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSY 300 (491)
T ss_pred cCCCccchhhhhhcccccchhhhhhh-HhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccc
Confidence 1112333 6789999999998888999999999988764444 44445556664 345667
Q ss_pred EEEccCHHHHhhcCCCCchhhHHHHHHhccCCcCeEEEEEEeccc-cc---cccCccee--ecC--CceeEEeccCcccc
Q 009198 332 YVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK-LK---NTYDHLLF--SRS--SLLSVYADMSLTCK 403 (540)
Q Consensus 332 VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-~~---~~~~~~~~--~~~--~~~~~~~~~s~~~~ 403 (540)
+..+.++..+.+|++... .....++.++.|.++..|++.|.++ .. +.++.++. ... ...++.++. ...+
T Consensus 301 ~~~t~~~~k~a~ll~~~~--~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS-~~Fp 377 (491)
T KOG1276|consen 301 DAATLPAVKLAKLLRGLQ--NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDS-MLFP 377 (491)
T ss_pred cccccchHHhhhhccccc--hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeec-ccCC
Confidence 777999999999998742 3445677889999999999999986 32 34555554 222 234555552 2233
Q ss_pred cccCCCccEEEEEeecccccc--CCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCC
Q 009198 404 EYYNPNQSMLELVFAPAEEWI--SCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL 481 (540)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 481 (540)
...+++.+.+....+....|. ..+.|++++.+.++|.++++..-. .....+.-|+.+++.|..+.......
T Consensus 378 ~~~~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~-------P~~~~v~l~~~ciPqy~vGh~~~le~ 450 (491)
T KOG1276|consen 378 DRSPSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNK-------PVSVNVHLWKNCIPQYTVGHDDVLEA 450 (491)
T ss_pred CCCCCceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCC-------cccccceehhhcccceecchHHHHHH
Confidence 333333332222222223332 447899999999999999975211 22233346777777777765443332
Q ss_pred CC---CCC--CCeEEecccccCCCCCchHHHHHHHHHHHHHHH
Q 009198 482 QR---SPV--EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 519 (540)
Q Consensus 482 ~~---~~~--~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~ 519 (540)
.+ +.. .+|+++|.++.. .++..++++|.++|.+|+
T Consensus 451 a~~~l~~~~g~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 451 AKSMLTDSPGLGLFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred HHHHHHhCCCCceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 21 222 489999999876 599999999999999875
No 29
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.95 E-value=4e-26 Score=215.49 Aligned_cols=244 Identities=22% Similarity=0.278 Sum_probs=170.2
Q ss_pred cCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEE-ccCHHHHhhcCCC
Q 009198 269 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVF-ATPVDILKLQLPE 347 (540)
Q Consensus 269 ~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~-A~~~~~~~~ll~~ 347 (540)
....|.|+.|| +..++.++++.+++.|++|.+++.|.+|.. ++|++++|.+++|++++++.||+ |++..++.+|+|.
T Consensus 252 ~~g~~~Yp~GG-~Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 252 HKGGWGYPRGG-MGAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPG 329 (561)
T ss_pred cCCcccCCCCC-hhHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCC
Confidence 34568899999 899999999999999999999999999998 56999999999999999999998 5666788899999
Q ss_pred CchhhHHHHHHhccCCcC-eEE----EEEEecccccccc------------------------CcceeecCCceeEEecc
Q 009198 348 NWKEMAYFKRLEKLVGVP-VIN----IHIWFDRKLKNTY------------------------DHLLFSRSSLLSVYADM 398 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~-~~~----i~l~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~ 398 (540)
+.+|..+ .+.++.+.+ ..+ .|+..+..--.+. .+-..+..+.+.+. -+
T Consensus 330 e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~s-iP 406 (561)
T KOG4254|consen 330 EALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELS-IP 406 (561)
T ss_pred ccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEe-cc
Confidence 9888765 455554332 221 2332221110000 00011223333222 35
Q ss_pred CcccccccCCCccEEEEEeec-cccccCCC-------hHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCce--
Q 009198 399 SLTCKEYYNPNQSMLELVFAP-AEEWISCS-------DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-- 468 (540)
Q Consensus 399 s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~-- 468 (540)
|..++.++|++++++.++... ..+|+... .+++++++++.+++++|+.. .+++.+ ..-+|.+.
T Consensus 407 S~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfs------ssv~~~-dvgTP~t~qr 479 (561)
T KOG4254|consen 407 SSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFS------SSVESY-DVGTPPTHQR 479 (561)
T ss_pred cccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCcc------ceEEEE-ecCCCchhhH
Confidence 667788999999998775432 26676433 37899999999999999843 345444 34566532
Q ss_pred --------ecc-CCC---CCCCCCCC-----CCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhHHHhh
Q 009198 469 --------YKT-IPN---CEPCRPLQ-----RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 528 (540)
Q Consensus 469 --------~~~-~~~---~~~~~~~~-----~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~~~~~~ 528 (540)
+.. ..+ ....+|.. ++|++|||+||+.+.++ +++.++. |+.+|...+.+.+.....
T Consensus 480 ~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~~~~l 552 (561)
T KOG4254|consen 480 FLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKLYSDL 552 (561)
T ss_pred HhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhhHHHh
Confidence 111 111 12234444 78999999999999998 8999985 999999998887765443
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=7.1e-26 Score=232.84 Aligned_cols=432 Identities=22% Similarity=0.260 Sum_probs=227.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcC-CCcc-
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELG-INDR- 133 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg-l~~~- 133 (540)
..+||||||||+.||+||..|+++|++|+||||++.+||++++++ .+|+.+|.|++++..... ..++++++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~--~~~~~~l~~l~~~~ 78 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDP--GPLFRELGNLDADG 78 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCch--HHHHHHhccCcccc
Confidence 468999999999999999999999999999999999999999988 459999999988764433 36667777 5443
Q ss_pred cccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhc---CCCCChhHHHHhhhchhhhHhcC--cccccc--cCC
Q 009198 134 LQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRN---NEMLTWPEKVKFAIGLLPAIIGG--QAYVEA--QDG 206 (540)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~ 206 (540)
+.+...+..+......+... . ...........+.. .+...+................. ...... ...
T Consensus 79 l~~~~~~~~~~~~~~~g~~~--~----~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (487)
T COG1233 79 LDLLPPDPAYRVFLPDGDAI--D----VYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVP 152 (487)
T ss_pred eeeeccCCceeeecCCCCEE--E----ecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcc
Confidence 22222211111111111110 0 01111111111110 01111111111111111100000 000000 011
Q ss_pred CCHHHHHHHh----CCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCc
Q 009198 207 LTVQEWMRKQ----VQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPE 282 (540)
Q Consensus 207 ~s~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~ 282 (540)
.....++.-. ....+++... +..+..+..+........ .++...++ ...+.... .....+.++.|| ++
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a---~~~~~~~~--~~~~G~~~p~GG-~~ 224 (487)
T COG1233 153 DTPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPA---LYLLLSHL--GLSGGVFYPRGG-MG 224 (487)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhH---HHHHHHHh--cccCCeeeeeCC-HH
Confidence 1222222211 0011111111 333333333333221122 34444431 11112222 233457788888 89
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhccC
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLV 362 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~ 362 (540)
.++++|++.++++|++|+++++|++|.. ++|+.+++++.+|+.+.+|.||++........+.++.... ....... .
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~~-~~~~~~~--~ 300 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADPALLARLLGEARRP-RYRGSYL--K 300 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCchhhhhhhhhhhhhh-ccccchh--h
Confidence 9999999999999999999999999998 6666667888888779999999998775545554432210 0000000 0
Q ss_pred CcCeEEEEEEeccccccc-cCccee----------------ecCCceeEEe-ccCcccccccCCCccEEEE--Eeec-cc
Q 009198 363 GVPVINIHIWFDRKLKNT-YDHLLF----------------SRSSLLSVYA-DMSLTCKEYYNPNQSMLEL--VFAP-AE 421 (540)
Q Consensus 363 ~~~~~~i~l~~~~~~~~~-~~~~~~----------------~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~--~~~~-~~ 421 (540)
..+.+..++.++...... ....++ ...+ .++. .++..+++++|+|.+.+.. ...+ ..
T Consensus 301 ~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~ 378 (487)
T COG1233 301 SLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPP--PLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLG 378 (487)
T ss_pred hhHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCC--ceEEeCCCCCCCccCCCCCcceeeeeeecCcCC
Confidence 112223333343321000 001111 0111 2232 3566788999999762212 2222 12
Q ss_pred cccCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEEecCCCceecc-----------C---CCCCCCCCCC-CCCC
Q 009198 422 EWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKT-----------I---PNCEPCRPLQ-RSPV 486 (540)
Q Consensus 422 ~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------~---~~~~~~~~~~-~~~~ 486 (540)
.| +...+++.+. +..+++..|+.. ..+ ......+|.....+ . .+....+|.. ++++
T Consensus 379 ~~-~~~~~~~~~~-~~~~~~~~p~~~------~~i-v~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i 449 (487)
T COG1233 379 DY-DELKESLADA-IDALEELAPGLR------DRI-VAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPI 449 (487)
T ss_pred Ch-HHHHHHHHHH-HHHHhhcCCCcc------cce-eEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCc
Confidence 22 2234556666 667888888742 234 34444555532111 0 1122344544 4889
Q ss_pred CCeEEecccccCCCCCchHHHHHHHHHHHHHHHHH
Q 009198 487 EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 521 (540)
Q Consensus 487 ~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~ 521 (540)
+|||++|+++.++ +++.++..++..++..+...
T Consensus 450 ~~LYl~Ga~t~PG--~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 450 KGLYLVGASTHPG--GGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred CceEEeCCcCCCC--CCcchhhhhHHHHHhhhccc
Confidence 9999999999998 89999988777777766544
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.91 E-value=3.6e-24 Score=189.73 Aligned_cols=322 Identities=21% Similarity=0.250 Sum_probs=203.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCccc-cc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL-QW 136 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~-~~ 136 (540)
.+|+|||+||+|++||+.|+..|.+|+|+||..-+||++.+.. ..+..+|.|+.++....+.+.++++.+.-+.-+ .|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 3699999999999999999999999999999999999998865 456669999999876666565555544322100 00
Q ss_pred ccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHHHh
Q 009198 137 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (540)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (540)
.+ .+..+-
T Consensus 81 ~~---------------------------------------------------------------------~~~~~~--- 88 (331)
T COG3380 81 TP---------------------------------------------------------------------AVWTFT--- 88 (331)
T ss_pred cc---------------------------------------------------------------------cccccc---
Confidence 00 000000
Q ss_pred CCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCccchhHHHHHHHHcC
Q 009198 217 VQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLG 296 (540)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~G 296 (540)
+ ....+. +....|....++..|++.|+ ..
T Consensus 89 ----------~-----------------~~~~~~-------------------~d~~pyvg~pgmsalak~LA-----td 117 (331)
T COG3380 89 ----------G-----------------DGSPPR-------------------GDEDPYVGEPGMSALAKFLA-----TD 117 (331)
T ss_pred ----------c-----------------CCCCCC-------------------CCCCccccCcchHHHHHHHh-----cc
Confidence 0 000000 00000111001333443333 34
Q ss_pred cEEEeCcceeEEEEccCCcEEEEEEcCC-cEEEcCEEEEccCHHHHhhcCCC--CchhhHHHHHHhccCCcCeEEEEEEe
Q 009198 297 GEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPE--NWKEMAYFKRLEKLVGVPVINIHIWF 373 (540)
Q Consensus 297 ~~i~~~t~V~~I~~~~~~~~~~V~~~~G-~~i~a~~VI~A~~~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~i~l~~ 373 (540)
.+|+++++|++|... ++ .+.+++++| +...+|.||+|.|+..+..||.. ...|..++.++..+.|.++..+.+.|
T Consensus 118 L~V~~~~rVt~v~~~-~~-~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~ 195 (331)
T COG3380 118 LTVVLETRVTEVART-DN-DWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGY 195 (331)
T ss_pred chhhhhhhhhhheec-CC-eeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcC
Confidence 689999999999985 33 346899776 45789999999999877888754 34566788899999999998888999
Q ss_pred ccccccccCcceeecCCceeEEeccCcccccccCCCccEEEEEeeccccc----cCCChHHHHHHHHHHHHHhCCCcccc
Q 009198 374 DRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEW----ISCSDSEIIDATMKELAKLFPDEISA 449 (540)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~v~~~l~~~~p~~~~~ 449 (540)
..+...++.+....+.++-.+-.+.+ -+...|.+..++ +.. ..+| .+.++|..+..+........+.. .+
T Consensus 196 ~q~l~~P~~G~~vdg~~laWla~d~s--K~g~~p~~~~~v--vqa-sp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~-~~ 269 (331)
T COG3380 196 PQPLDRPWPGNFVDGHPLAWLARDAS--KKGHVPDGEIWV--VQA-SPDWSREHLDHPAEQVIVALRAAAQELDGDR-LP 269 (331)
T ss_pred CccCCCCCCCcccCCCeeeeeecccc--CCCCCCcCceEE--EEe-CchHHHHhhcCCHHHHHHHHHHhhhhccCCC-CC
Confidence 98876665554445555543322212 234444444322 121 2344 35567777766666666666631 11
Q ss_pred ccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 009198 450 DQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 522 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l 522 (540)
+ +......+|+++.+....+.. +....+.-+||+||||+.. +-+|||.+||.-+|++|++.|
T Consensus 270 ~-----p~~s~~H~WrYA~P~~~~~~~---~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 270 E-----PDWSDAHRWRYAIPNDAVAGP---PLDADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred c-----chHHHhhccccccccccccCC---ccccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 1 233445566666543222211 1111344579999999987 699999999999999999864
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=185.95 Aligned_cols=284 Identities=21% Similarity=0.293 Sum_probs=192.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeec---cCCCCeeeccceeecc-CcccHHHHHHhcCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK---DGDGDWYETGLHIFFG-AYPNIQNLFGELGI 130 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~---~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl 130 (540)
....+|+|||+|++||+||+.|+++ ++||++|+..++||.+.+.. ..+|..+|+|.+++.+ .|+++..+++++|+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv 84 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGV 84 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCC
Confidence 3567999999999999999999987 89999999999999999974 4567899999999987 89999999999999
Q ss_pred CcccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcC--cccccccCCCC
Q 009198 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGG--QAYVEAQDGLT 208 (540)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s 208 (540)
+... ..+.+.+....+. +++.... .+..++.....+..+....++++++...... ..........+
T Consensus 85 ~t~a----s~Msf~v~~d~gg---lEy~g~t-----gl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~t 152 (447)
T COG2907 85 DTKA----SFMSFSVSLDMGG---LEYSGLT-----GLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTT 152 (447)
T ss_pred CCcc----cceeEEEEecCCc---eeeccCC-----CccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCcc
Confidence 8642 2333333322221 1111100 0001111111222223333333333322211 11112234689
Q ss_pred HHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccC-------cceeeecCCCC
Q 009198 209 VQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG-------SKMAFLDGNPP 281 (540)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g-------~~~~~~~gg~~ 281 (540)
+++||+++ +++..+.++++.++..+++..+..+++.......+ .++. ..| ..|..+.|| .
T Consensus 153 l~~~L~~~----------~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~-nhGll~l~~rp~wrtV~gg-S 219 (447)
T COG2907 153 LAQYLKQR----------NFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTD-NHGLLYLPKRPTWRTVAGG-S 219 (447)
T ss_pred HHHHHHhc----------CccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHh-ccCceecCCCCceeEcccc-h
Confidence 99999999 99999999999999999988888887755444333 3332 233 235555555 4
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhcc
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKL 361 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~ 361 (540)
.+.++.|...+ +.+|.++++|.+|.+-.+|.+ |+..+|++-++|+||+||.++.+..||+++. | ..++.+..+
T Consensus 220 ~~yvq~laa~~---~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~mL~e~s-p-~e~qll~a~ 292 (447)
T COG2907 220 RAYVQRLAADI---RGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALALLDEPS-P-EERQLLGAL 292 (447)
T ss_pred HHHHHHHhccc---cceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHhcCCCC-H-HHHHHHHhh
Confidence 55555555443 467999999999998777754 6667798889999999999998899998863 2 445677888
Q ss_pred CCcCeEEEEE
Q 009198 362 VGVPVINIHI 371 (540)
Q Consensus 362 ~~~~~~~i~l 371 (540)
.|.....+..
T Consensus 293 ~Ys~n~aVlh 302 (447)
T COG2907 293 RYSANTAVLH 302 (447)
T ss_pred hhhhceeEEe
Confidence 8866555443
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.86 E-value=6.6e-19 Score=178.11 Aligned_cols=429 Identities=16% Similarity=0.202 Sum_probs=229.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC----CCceEEEecCCCCCcceeeecc-CCCCeeeccceeeccCcccHHHHHHhc
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKD-GDGDWYETGLHIFFGAYPNIQNLFGEL 128 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~----g~~v~v~E~~~~~gG~~~~~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l 128 (540)
...+.+|+|||||++||+||++|++. |.+|+|+|+++.+||++.++.. .+|+.++.|.+ +...+..++++++++
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~i 97 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSI 97 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhc
Confidence 34568999999999999999999996 6799999999999999987542 46787777754 567777889999887
Q ss_pred CCCcccccccccceeecCCCCCCc--ccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCC
Q 009198 129 GINDRLQWKEHSMIFAMPNKPGEF--SRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDG 206 (540)
Q Consensus 129 gl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (540)
+-......+..+..+......... .++....... + ....+.+..+.+. .+.+.+... ...++.
T Consensus 98 psle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~---------~-d~~~~~L~~k~r~--~Ll~l~l~~---e~~Ld~ 162 (576)
T PRK13977 98 PSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEI---------L-DTDKFGLSKKDRK--ELLKLLLTP---EEKLDD 162 (576)
T ss_pred cccCCCCcccccceeeeecCCcccceeeEEcCCCCE---------E-ECcCCCCCHHHHH--HHHHHhccC---HHHhCC
Confidence 422111111110111110000000 0111000000 0 0111122222111 112222111 345678
Q ss_pred CCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhh----ccCcceeeecCCCCc
Q 009198 207 LTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE----KHGSKMAFLDGNPPE 282 (540)
Q Consensus 207 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~----~~g~~~~~~~gg~~~ 282 (540)
.++.+|+.+. .+ +..|..+.+..+++. +..|+......+..|+.. ...+.+.+...++..
T Consensus 163 ~tI~d~f~~~----------Ff-----~t~Fw~~w~t~FaF~-~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqye 226 (576)
T PRK13977 163 KTIEDWFSPE----------FF-----ETNFWYYWRTMFAFE-KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYE 226 (576)
T ss_pred cCHHHHHhhc----------Cc-----hhHHHHHHHHHHCCc-hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchh
Confidence 9999999987 33 233444444444444 566777777776666432 233445566666678
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEc-cC--CcEEEEEEcC-Cc-----EEEcCEEEEccCHHHHhhcCCCCchhh-
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELN-DD--GTVKNFLLTN-GN-----VIDGDAYVFATPVDILKLQLPENWKEM- 352 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~-~~--~~~~~V~~~~-G~-----~i~a~~VI~A~~~~~~~~ll~~~~~~~- 352 (540)
.++..|.+.|+++||+|+++++|++|..+ ++ +++++|.+.+ |+ ....|.||+|+|..+-..-+++...|+
T Consensus 227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~p~~ 306 (576)
T PRK13977 227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDTPAP 306 (576)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCCCCC
Confidence 99999999999999999999999999874 23 5688887753 32 235789999998866333332211110
Q ss_pred ---------HHHHHHhcc--------------CCcCeEEEEEEeccc-ccc---------ccC------cc-eeecCCc-
Q 009198 353 ---------AYFKRLEKL--------------VGVPVINIHIWFDRK-LKN---------TYD------HL-LFSRSSL- 391 (540)
Q Consensus 353 ---------~~~~~~~~~--------------~~~~~~~i~l~~~~~-~~~---------~~~------~~-~~~~~~~- 391 (540)
...+.+.+- .........+.++.+ +.+ +.. ++ .+.++.|
T Consensus 307 ~~~~~~~~w~LW~~la~~~~~fG~P~~F~~~~~~s~w~SfTvT~~~~~~~~~i~~~t~~~p~~g~~~tg~~vt~~dS~W~ 386 (576)
T PRK13977 307 LNRELGGSWTLWKNIAAQSPEFGNPDKFCGDIPESNWESFTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFKDSNWL 386 (576)
T ss_pred CCCCCCccHHHHHHHHhcCccCCChhhhcCCcccceEEEEEEEcCCHHHHHHHHHHhCCCCCCCccccCceeEEecCCee
Confidence 111222211 111111122222211 110 111 11 1233333
Q ss_pred eeEEeccCcccccccCCCccEEE-EEee---cc------ccccCCChHHHHHHHHHHHHHhCCCccccccccceEEEEEE
Q 009198 392 LSVYADMSLTCKEYYNPNQSMLE-LVFA---PA------EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHV 461 (540)
Q Consensus 392 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~---~~------~~~~~~~~e~~~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~ 461 (540)
+++... ..+.+......+.. ..|+ +. ....+++.+||..+++-+|.- |...-++.. .......-
T Consensus 387 ~s~~v~---~QP~F~~Qp~d~~v~WgY~l~~~~~G~yvkKpm~~CtG~Ei~~E~l~Hl~~--~~~~~~~i~-~~~~~~ip 460 (576)
T PRK13977 387 MSITVN---RQPHFKNQPKNETVVWGYGLYPDRPGNYVKKPMRECTGEEILQELLYHLGV--PEDKIEELA-ADSANTIP 460 (576)
T ss_pred EEEEec---CCCCCCCCCCCcEEEEEEecccCCCCCccCCchhhCCHHHHHHHHHHhcCC--chhhHHHHH-hhcCceEe
Confidence 232211 11223332222222 2232 11 223367889998888888721 110000000 01112233
Q ss_pred ecCCCceeccCCCCCCCCCCCCC-CCCCeEEecccccCCC-C-CchHHHHHHHHHHHHHHHH
Q 009198 462 VKTPRSVYKTIPNCEPCRPLQRS-PVEGFYLAGDYTKQKY-L-ASMEGAVLSGKLCAQAIVQ 520 (540)
Q Consensus 462 ~~~p~~~~~~~~~~~~~~~~~~~-~~~~l~~aG~~~~~~~-~-~~~~ga~~sg~~aA~~v~~ 520 (540)
..-|+......|....-||.... ...||-|.|+.+-... . -++|-++.+|+.|+-+++.
T Consensus 461 ~~MP~ita~f~pR~~gDRP~VvP~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 461 VMMPYITSQFMPRAKGDRPLVVPEGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred eccchhhhhhCCCCCCCCCCcCCCCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 44555444444443334444332 2569999999886431 1 2899999999999988765
No 34
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.78 E-value=5e-17 Score=167.33 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=51.7
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 346 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~ 346 (540)
|.+++..|++.+++.|++|+.+++|++|+. ++ . +.|++++| ++.||+||+|+|.|+ ..+++
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~-~-~~v~t~~g-~v~A~~VV~Atga~s-~~l~~ 242 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQ-P-AVVRTPDG-QVTADKVVLALNAWM-ASHFP 242 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CC-c-eEEEeCCc-EEECCEEEEcccccc-cccCh
Confidence 789999999999999999999999999975 33 2 35888888 699999999999987 44544
No 35
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.75 E-value=2e-16 Score=159.15 Aligned_cols=258 Identities=14% Similarity=0.169 Sum_probs=156.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeecc-------------------CCCCeeeccceeec
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD-------------------GDGDWYETGLHIFF 115 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~-------------------~~g~~~d~G~~~~~ 115 (540)
++.+||+|||+|++|+.+|..|++.|++|+++|+++..||+..++.. ...+-+|+..+++.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 46799999999999999999999999999999999999999998631 02233455555554
Q ss_pred cCcccHHHHHHhcCCCcccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhh--
Q 009198 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPA-- 193 (540)
Q Consensus 116 ~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 193 (540)
.. ..+..++.+.++...+++...+..+... ..+++.. .|.. ..+.+. ...+.+.++.+..+-+...
T Consensus 82 ~~-G~lv~lL~~s~v~ryleF~~l~g~~v~~-~~g~~~~------vP~s---~~~~~~-s~ll~l~eKr~l~kfl~~v~~ 149 (443)
T PTZ00363 82 AS-GELVKILLHTDVTRYLEFKVIDGSYVYQ-KEGKIHK------VPAT---DMEALS-SPLMGFFEKNRCKNFLQYVSN 149 (443)
T ss_pred cC-ChHHHHHhhcCccceeeeEEeceEEEEe-cCCeEEE------CCCC---HHHHhh-CCCcchhhHHHHHHHHHHHHh
Confidence 33 3456777778887766665544333220 1122111 1221 111121 2334444554443222111
Q ss_pred HhcCc-ccccc--cCCCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh--hc
Q 009198 194 IIGGQ-AYVEA--QDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EK 268 (540)
Q Consensus 194 ~~~~~-~~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~ 268 (540)
..... ..+.. .+..++.+|++++ +++....+ ++...+.........+.+.......+..+.. ..
T Consensus 150 ~~~~~~~~~~~~~~d~~T~~d~L~~~----------~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~ 218 (443)
T PTZ00363 150 YDENDPETHKGLNLKTMTMAQLYKKF----------GLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSR 218 (443)
T ss_pred hccCChhhhcccCcccCCHHHHHHHh----------CCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhh
Confidence 11100 01111 3467999999988 77765444 2222222211111111122222222222221 12
Q ss_pred cC-cceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEcc
Q 009198 269 HG-SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFAT 336 (540)
Q Consensus 269 ~g-~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~ 336 (540)
+| ..+.|+.+| .+.++++|++.+...|++++++++|++|..++++++++|++.+|++++|++||+..
T Consensus 219 ~g~~p~~yp~gG-~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 219 YGKSPFIYPLYG-LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP 286 (443)
T ss_pred ccCCcceeeCCC-HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence 22 235678777 78999999999999999999999999999855677888999999999999999853
No 36
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.73 E-value=4.8e-16 Score=158.22 Aligned_cols=201 Identities=12% Similarity=0.176 Sum_probs=110.9
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHH--hhcCCCCchhhHHHHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL--KLQLPENWKEMAYFKRL 358 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~--~~ll~~~~~~~~~~~~~ 358 (540)
+..++..|++.+.++|++++.+++|++|+..+++.+++|++.+| ++.|++||+|++.+.. .+++... .+
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~-~~------- 252 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR-LP------- 252 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC-CC-------
Confidence 56788889999999999999999999998644566777889888 6999999999988762 1222111 11
Q ss_pred hccCCcCeEEEEEEeccccccccCcceeecCCceeEEeccCcccccccCCCccEEEEEeeccccccCCChHHHHHHHHHH
Q 009198 359 EKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKE 438 (540)
Q Consensus 359 ~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~~~ 438 (540)
+. +. ...+.+.++.......++..... ..|+.+ .+++..++..............+.+..+.+++.
T Consensus 253 --~~--~~-~~~~~~~~~~~~~~~~~~~~~~~--~~y~~p-------~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~ 318 (407)
T TIGR01373 253 --IE--SH-PLQALVSEPLKPIIDTVVMSNAV--HFYVSQ-------SDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAA 318 (407)
T ss_pred --cC--cc-cceEEEecCCCCCcCCeEEeCCC--ceEEEE-------cCCceEEEecCCCCCCccCcCCCHHHHHHHHHH
Confidence 00 00 11111122211101111111000 011110 112322222111111112222346678889999
Q ss_pred HHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHH
Q 009198 439 LAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 518 (540)
Q Consensus 439 l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v 518 (540)
+.+++|.... ..+. ..| .+.+...++..+..-. .+.+|+|++..+.. .|+..|...|+..|+.|
T Consensus 319 ~~~~~P~l~~-----~~~~-~~w----~G~~~~t~D~~PiIg~--~~~~gl~~a~G~~g----~G~~~ap~~G~~la~li 382 (407)
T TIGR01373 319 ILEMFPILSR-----VRML-RSW----GGIVDVTPDGSPIIGK--TPLPNLYLNCGWGT----GGFKATPASGTVFAHTL 382 (407)
T ss_pred HHHhCCCcCC-----CCeE-EEe----ccccccCCCCCceeCC--CCCCCeEEEeccCC----cchhhchHHHHHHHHHH
Confidence 9999997421 1121 122 3344445553333222 23589999986543 48888888999999988
Q ss_pred HH
Q 009198 519 VQ 520 (540)
Q Consensus 519 ~~ 520 (540)
+.
T Consensus 383 ~~ 384 (407)
T TIGR01373 383 AR 384 (407)
T ss_pred hC
Confidence 74
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.72 E-value=6.1e-16 Score=158.13 Aligned_cols=202 Identities=15% Similarity=0.109 Sum_probs=109.8
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhc
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 360 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~ 360 (540)
+..++..|.+.+.++|++|+++++|++|+. +++.++.|++.+| ++.||+||+|+|.+. ..+++..-... .+
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~t~~~-~~~a~~VV~a~G~~~-~~l~~~~g~~~----pi-- 270 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALGSYS-TALLKPLGVDI----PV-- 270 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCEEEEEEeCCc-EEeCCEEEECCCcch-HHHHHHhCCCc----cc--
Confidence 678999999999999999999999999987 4555666888777 799999999999987 33332110000 00
Q ss_pred cCCcCeEEEEEEeccccccccCcceeecCCceeEEeccCccccccc-CCCccEEEEEeeccccccCCChHHHHHHHHHHH
Q 009198 361 LVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYY-NPNQSMLELVFAPAEEWISCSDSEIIDATMKEL 439 (540)
Q Consensus 361 ~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~~~l 439 (540)
.......+.+..+..... +...+. +... ...+. ..+..++.... ....+....+++..+.+.+.+
T Consensus 271 -~p~rg~~~~~~~~~~~~~----------p~~~~~-~~~~-~~~~~~~~~~~~iG~~~-~~~~~~~~~~~~~~~~l~~~~ 336 (416)
T PRK00711 271 -YPLKGYSLTVPITDEDRA----------PVSTVL-DETY-KIAITRFDDRIRVGGMA-EIVGFDLRLDPARRETLEMVV 336 (416)
T ss_pred -CCccceEEEEecCCCCCC----------CceeEE-eccc-CEEEeecCCceEEEEEE-EecCCCCCCCHHHHHHHHHHH
Confidence 000011112222211100 000000 0000 00011 12222222221 112222233456778888889
Q ss_pred HHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHH
Q 009198 440 AKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 519 (540)
Q Consensus 440 ~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~ 519 (540)
.+++|..... .+. ..| .+.+...++..+.... .+.+|+|++..+.. .|+.-|...|+..|+.|+
T Consensus 337 ~~~~P~l~~~-----~~~-~~w----~G~r~~t~D~~PiIG~--~~~~gl~~a~G~~g----~G~~~ap~~g~~la~li~ 400 (416)
T PRK00711 337 RDLFPGGGDL-----SQA-TFW----TGLRPMTPDGTPIVGA--TRYKNLWLNTGHGT----LGWTMACGSGQLLADLIS 400 (416)
T ss_pred HHHCCCcccc-----ccc-cee----eccCCCCCCCCCEeCC--cCCCCEEEecCCch----hhhhhhhhHHHHHHHHHc
Confidence 9999973211 111 112 2223333443222211 13589999886643 488899999999999887
Q ss_pred HH
Q 009198 520 QD 521 (540)
Q Consensus 520 ~~ 521 (540)
..
T Consensus 401 g~ 402 (416)
T PRK00711 401 GR 402 (416)
T ss_pred CC
Confidence 53
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.71 E-value=3.2e-17 Score=164.25 Aligned_cols=63 Identities=30% Similarity=0.443 Sum_probs=52.7
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 346 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~ 346 (540)
+.++++.|.+.+++.|++|+++++|++|.. +++.+.+|.+.+|+ +.||+||+|+|+++ ..|++
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~ 208 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLP 208 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccccc-eeeee
Confidence 689999999999999999999999999998 56667789999996 99999999999987 44433
No 39
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.67 E-value=9.6e-15 Score=148.85 Aligned_cols=204 Identities=14% Similarity=0.139 Sum_probs=104.9
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC-----cEEEcCEEEEccCHHHHhhcCCCCchhhHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKLQLPENWKEMAYF 355 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G-----~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~ 355 (540)
+.+++..|.+.+++.|++|+++++|++|+. +++.+ .+.+.++ .+++||+||+|+|+++ ..+.+......
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~-~~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s-~~l~~~~~~~~--- 269 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKT-DGGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS-RALAAMLGDRV--- 269 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-eCCEE-EEEEEcCCCCccceEecCEEEECCCcCh-HHHHHHhCCCC---
Confidence 678889999999999999999999999987 34433 3433332 3699999999999987 33322100000
Q ss_pred HHHhccCCcCeEEEEEEeccccccccCcceeecCCceeEEeccCcc-cccccCCCccEEEEEeeccccccCCChHHHHHH
Q 009198 356 KRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLT-CKEYYNPNQSMLELVFAPAEEWISCSDSEIIDA 434 (540)
Q Consensus 356 ~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 434 (540)
.+.... ...+ .+......... ..+...+. +.... ......++..++...... .......+.+..+.
T Consensus 270 -~i~p~~-g~~~--~~~~~~~~~~~-------~~p~~~~~-~~~~~~~~~~~~~~~~~igg~~~~-~~~~~~~~~~~~~~ 336 (410)
T PRK12409 270 -NVYPVK-GYSI--TVNLDDEASRA-------AAPWVSLL-DDSAKIVTSRLGADRFRVAGTAEF-NGYNRDIRADRIRP 336 (410)
T ss_pred -ccccCC-ceEE--EeecCCccccc-------cCCceeee-ecCCcEEEEecCCCcEEEEEEEEe-cCCCCCCCHHHHHH
Confidence 000001 0111 11121111000 00100000 00000 000012233223222211 11222234568888
Q ss_pred HHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHH
Q 009198 435 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 514 (540)
Q Consensus 435 v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~a 514 (540)
+++.+.+++|..... .+ ..| .+.+...++..+..-. .+.+|+|++..+.. .|+.-|...|+..
T Consensus 337 l~~~~~~~~P~l~~~-----~~-----~~w-~G~r~~t~D~~PiiG~--~~~~~l~~~~G~~~----~G~~~ap~~g~~l 399 (410)
T PRK12409 337 LVDWVRRNFPDVSTR-----RV-----VPW-AGLRPMMPNMMPRVGR--GRRPGVFYNTGHGH----LGWTLSAATADLV 399 (410)
T ss_pred HHHHHHHhCCCCCcc-----cc-----cee-cccCCCCCCCCCeeCC--CCCCCEEEecCCcc----cchhhcccHHHHH
Confidence 899999999974211 11 111 3333444443222221 23689998875422 4888999999999
Q ss_pred HHHHHH
Q 009198 515 AQAIVQ 520 (540)
Q Consensus 515 A~~v~~ 520 (540)
|+.|..
T Consensus 400 A~~i~~ 405 (410)
T PRK12409 400 AQVVAQ 405 (410)
T ss_pred HHHHcC
Confidence 998864
No 40
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.66 E-value=2.6e-14 Score=144.37 Aligned_cols=208 Identities=13% Similarity=0.096 Sum_probs=108.9
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhc
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 360 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~ 360 (540)
|.+++..|.+.+++.|++++.+++|++|+. +++.+ .|.+.+| ++.||+||+|+|.+. ..+.+..-. .
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~-~~~~~-~v~~~~~-~i~a~~vV~aaG~~~-~~l~~~~g~---------~ 210 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEP-TELLV-TVKTTKG-SYQANKLVVTAGAWT-SKLLSPLGI---------E 210 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEe-cCCeE-EEEeCCC-EEEeCEEEEecCcch-HHHhhhccc---------C
Confidence 678999999999999999999999999987 34444 4778777 799999999999876 344332100 0
Q ss_pred cCCcCeEEEEEEeccccccccCcceeecCCceeEEeccCcccccccCC--CccEEEEEeecc-------ccccCCChHHH
Q 009198 361 LVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNP--NQSMLELVFAPA-------EEWISCSDSEI 431 (540)
Q Consensus 361 ~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~e~~ 431 (540)
+.-.+.-.-.+.+..+...... . ....+... ....+.... ..|. +..++....... ..|....++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~p~~~-~~~~~~~~y-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (380)
T TIGR01377 211 IPLQPLRINVCYWREKEPGSYG-V-SQAFPCFL-VLGLNPHIY-GLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIED 286 (380)
T ss_pred CCceEEEEEEEEEecCCccccC-c-cCCCCEEE-EeCCCCceE-ecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHH
Confidence 0000111111112211110000 0 00001100 000000000 0111 112222211110 12222245677
Q ss_pred HHHHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHH
Q 009198 432 IDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSG 511 (540)
Q Consensus 432 ~~~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg 511 (540)
.+.+.+.+.+.+|..... .... | .+++.+.|+..+... .....+|||++..+.. .|+.-+...|
T Consensus 287 ~~~l~~~~~~~~P~l~~~------~~~~-~----~~~~~~t~D~~piIg-~~p~~~~l~va~G~~g----~G~~~~p~~g 350 (380)
T TIGR01377 287 VQILRKFVRDHLPGLNGE------PKKG-E----VCMYTNTPDEHFVID-LHPKYDNVVIGAGFSG----HGFKLAPVVG 350 (380)
T ss_pred HHHHHHHHHHHCCCCCCC------ccee-e----EEEeccCCCCCeeee-cCCCCCCEEEEecCCc----cceeccHHHH
Confidence 889999999999984311 1111 1 122334444322211 1224689999986654 3777888899
Q ss_pred HHHHHHHHHH
Q 009198 512 KLCAQAIVQD 521 (540)
Q Consensus 512 ~~aA~~v~~~ 521 (540)
+..|+.|+..
T Consensus 351 ~~la~li~~~ 360 (380)
T TIGR01377 351 KILAELAMKL 360 (380)
T ss_pred HHHHHHHhcC
Confidence 9999999764
No 41
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.63 E-value=7.3e-14 Score=140.86 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=52.2
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 346 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~ 346 (540)
+.+++..+.+.+.+.|++|+++++|++|+. +++. +.|++.+| ++.||+||+|+|.+. ..+++
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~-~~v~~~~g-~~~a~~vV~A~G~~~-~~l~~ 209 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEA-DGDG-VTVTTADG-TYEAKKLVVSAGAWV-KDLLP 209 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEe-eCCe-EEEEeCCC-EEEeeEEEEecCcch-hhhcc
Confidence 678889999999999999999999999987 3443 35888888 799999999999987 55554
No 42
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.61 E-value=1.6e-13 Score=143.73 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=51.8
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc---CC--cEEEcCEEEEccCHHHHhhc
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILKLQ 344 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~---~G--~~i~a~~VI~A~~~~~~~~l 344 (540)
|.+++..++..+.++|++|+++++|++|.. +++++++|++. +| .+|.|++||+|+|+|. ..+
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa-~~l 214 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG-QHI 214 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH-HHH
Confidence 788999999999999999999999999987 56667777753 23 3799999999999997 444
No 43
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.59 E-value=2e-13 Score=138.33 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=49.8
Q ss_pred CccchhHHHHHHHHcC-cEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
|.+++..|++.+.+.| ..+..+++|+.+... . ..+.|.|.+|+ +.|++||+|+|.++
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 6789999999999999 567779999999873 3 56789999995 99999999999998
No 44
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.58 E-value=2.9e-13 Score=124.67 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=57.1
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEE-ccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCC
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIEL-NDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 347 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~-~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~ 347 (540)
+.+-++.+...+.+.|+.|+-+..|+.++. ++++..+.|.|.+|..+.|+++|+|+|+|+ ..||+.
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi-~klL~~ 218 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI-NKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH-HhhcCc
Confidence 678889999999999999999999999984 345556789999997799999999999999 677774
No 45
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.57 E-value=1.8e-13 Score=134.48 Aligned_cols=241 Identities=15% Similarity=0.164 Sum_probs=136.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCe-eeccceeeccCcccHHHHHHhcCCCccccc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDW-YETGLHIFFGAYPNIQNLFGELGINDRLQW 136 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~-~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~ 136 (540)
+||+|||||++|+++|+.|++.|.+|+|+|+++.+||.+.+.. .++.. .+.|+|++......+.+++.++.-... +
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~~~--~ 78 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWDYISPFFELNN--Y 78 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHHHHHhhccccc--e
Confidence 6999999999999999999999999999999999999877654 34444 588999998777777777776531111 1
Q ss_pred ccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHH---
Q 009198 137 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM--- 213 (540)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l--- 213 (540)
... ..... .+.+..+ |-....+..++... ....+........... ......++.+|.
T Consensus 79 ~~~-~~~~~---~g~~~~~------P~~~~~i~~l~~~~-------~~~~~~~~l~~~~~~~---~~~~~~~~~e~~d~~ 138 (377)
T TIGR00031 79 QHR-VLALY---NNLDLTL------PFNFNQFRKLLGVK-------DAQELQNFFNAQFKYG---DHVPLEELQEIADPD 138 (377)
T ss_pred eEE-EEEEE---CCeEEcc------CCCHHHHHHhcccc-------hHHHHHHHHHHHhhcc---cCCCCCCHHHHHHHH
Confidence 111 01111 1222111 11222222222110 0111111111100000 001113455555
Q ss_pred HHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhh-cc--CcceeeecCCCCccchhHHHH
Q 009198 214 RKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE-KH--GSKMAFLDGNPPERLCLPIVE 290 (540)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~--g~~~~~~~gg~~~~l~~~l~~ 290 (540)
.+. ++..+.+.++.++....|+.++++++..+....-..+... .+ ..-..+|.+| ...+.+.|++
T Consensus 139 ~~~-----------~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~G-yt~~~~~ml~ 206 (377)
T TIGR00031 139 IQL-----------LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGG-YTKLFEKMLD 206 (377)
T ss_pred HHH-----------HHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCccccccccccccc-HHHHHHHHHh
Confidence 554 6788889999999999999999999877553221111110 00 1122355554 3444444432
Q ss_pred HHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHh
Q 009198 291 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 342 (540)
Q Consensus 291 ~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~ 342 (540)
..+.+|++|+.+..+.. .+++ +.+..+ .+. +.||.|.+...+-
T Consensus 207 ---~~~i~v~l~~~~~~~~~-~~~~---~~~~~~-~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 207 ---HPLIDVKLNCHINLLKD-KDSQ---LHFANK-AIR-KPVIYTGLIDQLF 249 (377)
T ss_pred ---cCCCEEEeCCccceeec-cccc---eeeccc-ccc-CcEEEecCchHHH
Confidence 23689999997777764 3332 333444 333 8899987776533
No 46
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.57 E-value=4.1e-13 Score=144.48 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=54.5
Q ss_pred eeecCC--CCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009198 274 AFLDGN--PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 346 (540)
Q Consensus 274 ~~~~gg--~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~ 346 (540)
.++.+| .|..++..|.+.+.+ |++|+.+++|++|.. +++.+ .|.+.+|..+.|++||+|+|.+. ..+++
T Consensus 398 ~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~-~~~~~-~v~t~~g~~~~ad~VV~A~G~~s-~~l~~ 468 (662)
T PRK01747 398 FYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLER-EDDGW-QLDFAGGTLASAPVVVLANGHDA-ARFAQ 468 (662)
T ss_pred EeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEE-eCCEE-EEEECCCcEEECCEEEECCCCCc-ccccc
Confidence 344444 267899999999999 999999999999987 34444 48888886678999999999987 44443
No 47
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.55 E-value=4.1e-14 Score=134.57 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=51.2
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHh
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 342 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~ 342 (540)
...+++.|.+.+++.||+|+++++|.+|+.++ ....|.+++|++|.||.+|+|+|.-...
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence 57899999999999999999999999999843 2345899999889999999999854433
No 48
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.55 E-value=3.1e-13 Score=135.58 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=49.4
Q ss_pred CccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCC
Q 009198 281 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 347 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~ 347 (540)
+.+++..|.+.+.++ |++|+.+++|++|+. + .|++.+| ++.||+||+|+|++. ..|++.
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s-~~l~~~ 203 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF-ETLFPE 203 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh-hhhCcc
Confidence 778999999998876 999999999999964 2 4788888 589999999999987 556553
No 49
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.55 E-value=3.1e-12 Score=125.85 Aligned_cols=252 Identities=20% Similarity=0.276 Sum_probs=137.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHC----CCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCc
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~----g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 132 (540)
..++-|||+|+++|+||.+|.+. |.+|+|||+.+..||.+.+........+-.|+..+...+..++++++.+.-..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~IPSle 81 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSIPSLE 81 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhCCCCC
Confidence 45788999999999999999997 55999999999999998776543333344455555556667888888875322
Q ss_pred ccccccccceeecCCCCCCcc--cccCCCCCCCchhHHHHhhhcCC--CCChhHHHHhhhchhhhHhcCcccccccCCCC
Q 009198 133 RLQWKEHSMIFAMPNKPGEFS--RFDFPEVLPAPLNGILAILRNNE--MLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLT 208 (540)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 208 (540)
....+-.+.++.......... ++....+. ...... .+...+..+. ...+... -..++..+
T Consensus 82 ~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~---------~~~~~~~~~Ls~k~r~eL----~kL~l~~---E~~L~~~~ 145 (500)
T PF06100_consen 82 DPGKSVLDEIYWFNKEDPNYSKARLIDKRGQ---------IVDTDSKFGLSEKDRMEL----IKLLLTP---EEDLGDKR 145 (500)
T ss_pred CCCCcHHHHHHHhccCCCCCcceeeeccCCc---------cccccCcCCCCHHHHHHH----HHHhcCC---HHHhCccc
Confidence 211111111111111100000 00000000 000000 0111111111 1111111 12344567
Q ss_pred HHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccC----cceeeecCCCCccc
Q 009198 209 VQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERL 284 (540)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g----~~~~~~~gg~~~~l 284 (540)
+.+|+.+. +.+..|-.+.+..+++.+- .|+......+.+++....+ +.+.+...++...+
T Consensus 146 I~d~F~~~---------------FF~SnFW~~W~T~FAFqpW-hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSi 209 (500)
T PF06100_consen 146 IEDWFSES---------------FFESNFWYMWSTMFAFQPW-HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESI 209 (500)
T ss_pred HHHhcchh---------------hhcCchhHhHHHhhccCcc-hhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHH
Confidence 77777665 2333344444555556553 2444555555555543322 22334444447889
Q ss_pred hhHHHHHHHHcCcEEEeCcceeEEEEccC--C-cEEEEEE-cCCc--EE---EcCEEEEccCHHH
Q 009198 285 CLPIVEHIQSLGGEVRLNSRVQKIELNDD--G-TVKNFLL-TNGN--VI---DGDAYVFATPVDI 340 (540)
Q Consensus 285 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~--~-~~~~V~~-~~G~--~i---~a~~VI~A~~~~~ 340 (540)
+..|.+.|+++||++++++.|+.|..+.+ . .+..+++ .+|+ +| .-|.|+++.|.-+
T Consensus 210 i~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 210 ILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 99999999999999999999999986422 2 2333333 4453 33 2477888776644
No 50
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.54 E-value=2.3e-13 Score=133.95 Aligned_cols=95 Identities=24% Similarity=0.260 Sum_probs=67.4
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcE-EEcCEEEEccCHHHH--hhcCCCCchhhHHHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVDIL--KLQLPENWKEMAYFKR 357 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~-i~a~~VI~A~~~~~~--~~ll~~~~~~~~~~~~ 357 (540)
+..++.+|++.++++|++|++|++|+.|++.++| +..+.+.+|++ ++|+.||.|.|.++. .++...+. .
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~---~---- 223 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE---D---- 223 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc---c----
Confidence 6789999999999999999999999999986665 44588889866 999999999998762 22222211 0
Q ss_pred HhccCCcCeEEEEEEeccccccccCccee
Q 009198 358 LEKLVGVPVINIHIWFDRKLKNTYDHLLF 386 (540)
Q Consensus 358 ~~~~~~~~~~~i~l~~~~~~~~~~~~~~~ 386 (540)
....+....++.++........+.++
T Consensus 224 ---~~~~P~~G~y~~~~~~~~~~~~~~Iy 249 (429)
T COG0579 224 ---FKIFPVRGEYLVLDNEVKALLRHKIY 249 (429)
T ss_pred ---cccCccceEEEEEcccccccccceee
Confidence 12234445667777654443444444
No 51
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.52 E-value=1.9e-12 Score=130.08 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=90.6
Q ss_pred ceeeecCC-CCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCc-----EEEcCEEEEccCHHHHhhcC
Q 009198 272 KMAFLDGN-PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQL 345 (540)
Q Consensus 272 ~~~~~~gg-~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~-----~i~a~~VI~A~~~~~~~~ll 345 (540)
.+.|+++- .+.+|+...+..+.++|.+|.+.++|+++.. +++ +++|.+.|.+ +|+|+.||.|+|+|. .+++
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~-d~i~ 229 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWV-DEIL 229 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccH-HHHH
Confidence 44555553 2578999999999999999999999999998 555 8888876542 589999999999998 5443
Q ss_pred CCCchhhHHHHHHhccCCcCeEEEEEEeccccccccCcceeecC-CceeEEeccCcccccccCCCccEEEEEeecccc-c
Q 009198 346 PENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRS-SLLSVYADMSLTCKEYYNPNQSMLELVFAPAEE-W 423 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~ 423 (540)
.......... ....+.-.+++.+++ +++....+++... +-.-.|..+ -.+..++.++-.++.. -
T Consensus 230 ~~~~~~~~~~-----~~vr~skGsHlVv~~-~~~~~~a~~~~~~~d~r~~f~iP--------~~~~~liGTTD~~~~~~~ 295 (532)
T COG0578 230 EMAGLEQSPH-----IGVRPSKGSHLVVDK-KFPINQAVINRCRKDGRIVFAIP--------YEGKTLIGTTDTDYDGDP 295 (532)
T ss_pred HhhcccCCCC-----ccceeccceEEEecc-cCCCCceEEeecCCCCceEEEec--------CCCCEEeeccccccCCCc
Confidence 3211000000 112245567888888 5444333333211 111111110 1223344443333322 1
Q ss_pred c-CCChHHHHHHHHHHHHHhC
Q 009198 424 I-SCSDSEIIDATMKELAKLF 443 (540)
Q Consensus 424 ~-~~~~e~~~~~v~~~l~~~~ 443 (540)
. ....++-++.+++.+..++
T Consensus 296 ~~~~~~~eEidyll~~~~~~~ 316 (532)
T COG0578 296 EDPRITEEEIDYLLDAVNRYL 316 (532)
T ss_pred ccCCCCHHHHHHHHHHHHhhh
Confidence 1 1234667788888888433
No 52
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.52 E-value=5.7e-14 Score=139.96 Aligned_cols=66 Identities=26% Similarity=0.386 Sum_probs=45.5
Q ss_pred eeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 274 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 274 ~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.||.......+++.|.+.+++.|++|+++++|++|+. +++.+..|.+++++++.||+||+|||...
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEEEEecCCCC
Confidence 3444333568999999999999999999999999998 44555678886666899999999998654
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.50 E-value=1.9e-12 Score=131.92 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=44.4
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.|-..|.+.+++.|++|+.+++|++|.. +++.++.+++ +|+++.|+.||.|+|...
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~~-~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVEA-DGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEEc-CCcEEECCEEEEEeCCCH
Confidence 4556678888889999999999999987 4566655554 555899999999998754
No 54
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.50 E-value=8.4e-12 Score=132.23 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=50.6
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEcc-CCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~-~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
+.+++..|++.+.++|++|+.+++|++|..++ ++++++|++ .+|+ ++.|+.||+|+|+|.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 78999999999999999999999999998744 466767665 2343 589999999999997
No 55
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.49 E-value=6e-14 Score=102.15 Aligned_cols=66 Identities=42% Similarity=0.766 Sum_probs=58.0
Q ss_pred EECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeecc--CcccHHHHHHhc
Q 009198 62 IAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG--AYPNIQNLFGEL 128 (540)
Q Consensus 62 IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l 128 (540)
|||||++||++|+.|++.|++|+|+|+++.+||++.+... ++..+|.|+|++.. .++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999999874 77999999999986 457788888875
No 56
>PRK10015 oxidoreductase; Provisional
Probab=99.49 E-value=8.1e-12 Score=127.09 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=44.0
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.|-..|.+.+++.|++++.+++|+.|.. +++++.+|.+. +.++.|+.||.|+|...
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~-~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAG-DDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEeC-CeEEECCEEEEccCcch
Confidence 4555677888888999999999999987 45566666654 44799999999999753
No 57
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.45 E-value=1.5e-11 Score=124.41 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=49.3
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
+..+++.|.+.+++.|++|+++++|++|.. +++.+ .|.+.+| ++.||.||+|+|.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~-~~~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDE-HANGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEe-cCCeE-EEEECCC-EEEeCEEEECCCcch
Confidence 678999999999999999999999999987 34433 5788887 799999999999976
No 58
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.45 E-value=2.9e-11 Score=125.70 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=47.6
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcC---Cc--EEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~---G~--~i~a~~VI~A~~~~~ 340 (540)
+.+++..++..+.++|++++++++|++|.. +++. ++|++.+ |+ ++.|+.||+|+|+|.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~-~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARR-ENGL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-eCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 678888999999999999999999999987 3443 3566543 43 699999999999987
No 59
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.42 E-value=3.6e-11 Score=125.14 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=48.1
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC----cEEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G----~~i~a~~VI~A~~~~~ 340 (540)
+.+++..++..+.++|++|+.+++|++|.. +++ .+.|++.++ .++.|+.||+|+|+|.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~-~~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARR-EGG-LWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEE-cCC-EEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 678889999999999999999999999987 343 345766554 2599999999999987
No 60
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.41 E-value=7.9e-11 Score=119.02 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=45.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 339 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~ 339 (540)
..+.+.|++.+++.|++++.++.|+.+..++++.+. ++..++.+++|+.||.|.|+.
T Consensus 95 ~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 95 AKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVV-GVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred HHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEE-EEEcCCEEEEcCEEEECCCcc
Confidence 466778999999999999999999999985556554 334444689999999999874
No 61
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.39 E-value=5.9e-12 Score=128.87 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=50.9
Q ss_pred CccchhHHHHHHHH----cC--cEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHH
Q 009198 281 PERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 341 (540)
Q Consensus 281 ~~~l~~~l~~~l~~----~G--~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~ 341 (540)
+..++..|.+.+++ +| ++|+++++|++|+. .++..+.|++.+| ++.|++||+|+|.|+.
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-SNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-cCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 67899999999999 77 78999999999997 4344567889888 6999999999999883
No 62
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.36 E-value=2.4e-10 Score=115.84 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.|++++++++|++|+.+ ++.+ .|++.+|+++.||.||.|.|.+.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRV-RLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeE-EEEECCCCEEEeCEEEEecCCCc
Confidence 467778888888889999999999999873 3334 47788888899999999998864
No 63
>PRK07045 putative monooxygenase; Reviewed
Probab=99.34 E-value=4.5e-10 Score=113.67 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=46.5
Q ss_pred cchhHHHHHHHH-cCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+.+.|.+.+.+ .|++++++++|++|+..+++.++.|++.+|+++.+|.||-|.|...
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 455566666654 4799999999999998666655678888998999999999998854
No 64
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.9e-11 Score=106.15 Aligned_cols=42 Identities=43% Similarity=0.602 Sum_probs=38.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
.+.||+|||||++||+|||+|+++|.+|+|+|++-.+||-+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 467999999999999999999999999999999999888553
No 65
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.31 E-value=3.3e-10 Score=112.78 Aligned_cols=252 Identities=18% Similarity=0.243 Sum_probs=146.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeec--------------------cCCCCeeeccceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK--------------------DGDGDWYETGLHIF 114 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~--------------------~~~g~~~d~G~~~~ 114 (540)
+.++||||+|.|+.-...|..|++.|.+|+.+|+++.-||...++. ....+.+|+-+.++
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 5789999999999999999999999999999999999999988854 01235566666666
Q ss_pred ccCcccHHHHHHhcCCCcccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhH
Q 009198 115 FGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAI 194 (540)
Q Consensus 115 ~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (540)
.... .+.+++-+-++...+++..-+..+... .+++. ..|.... +.++ ...+...++++.++-+.-..
T Consensus 82 ~a~g-~LV~lLi~S~V~rYLEFk~V~~~~v~~--~~~l~------kVP~sr~---dvf~-s~~lsl~eKR~lmkFl~~v~ 148 (438)
T PF00996_consen 82 YARG-PLVKLLISSGVTRYLEFKAVDGSYVYK--NGKLH------KVPCSRE---DVFK-SKLLSLFEKRRLMKFLKFVA 148 (438)
T ss_dssp ETTS-HHHHHHHHCTGGGGSEEEEESEEEEEE--TTEEE------E--SSHH---HHHC--TTS-HHHHHHHHHHHHHHH
T ss_pred hccC-HHHHHHHhCCcccceEEEEcceeEEEe--CCEEe------eCCCCHH---Hhhc-CCCccHHHHHHHHHHHHHHh
Confidence 5433 455666667777666655544443322 11211 1222221 2222 24566667766654432221
Q ss_pred hcC--cc-ccc--ccCCCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCc--cchHHHHHHHHHHHhh-
Q 009198 195 IGG--QA-YVE--AQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPD--ELSMQCILIALNRFLQ- 266 (540)
Q Consensus 195 ~~~--~~-~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~- 266 (540)
... .+ .+. .....++.++++++ +++....+.+...+. +. .+.. +.+.......+..++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~e~~~~f----------~L~~~~~~~i~haia--L~-~~~~~~~~p~~~~l~ri~~yl~S 215 (438)
T PF00996_consen 149 NYEEDDPSTHKGLDPEKKTFQELLKKF----------GLSENLIDFIGHAIA--LS-LDDSYLTEPAREGLERIKLYLSS 215 (438)
T ss_dssp HGCTTBGGGSTTG-TTTSBHHHHHHHT----------TS-HHHHHHHHHHTS---S-SSSGGGGSBSHHHHHHHHHHHHH
T ss_pred hcccCCcchhhccccccccHHHHHHhc----------CCCHHHHHHHHHhhh--hc-cCcccccccHHHHHHHHHHHHHH
Confidence 111 11 111 23357889999887 777665444433221 11 1111 1123344444444432
Q ss_pred -hccC-cceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEE
Q 009198 267 -EKHG-SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVF 334 (540)
Q Consensus 267 -~~~g-~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~ 334 (540)
..+| +.+.|+..| ...|.+++++.+.-.|+.+.++++|.+|..++++++.+|.. +|++++|++||.
T Consensus 216 lgryG~sPfLyP~YG-~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~ 283 (438)
T PF00996_consen 216 LGRYGKSPFLYPLYG-LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG 283 (438)
T ss_dssp HCCCSSSSEEEETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE
T ss_pred HhccCCCCEEEEccC-CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE
Confidence 1233 457788887 68999999999999999999999999999877788888875 788999999995
No 66
>PLN02463 lycopene beta cyclase
Probab=99.31 E-value=1.1e-09 Score=111.12 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=44.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.|++++ +++|++|+.. ++. +.|++.+|+++.|+.||.|+|...
T Consensus 114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~-~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 114 KKLKSKMLERCIANGVQFH-QAKVKKVVHE-ESK-SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCe-EEEEECCCCEEEcCEEEECcCCCc
Confidence 4566778888888899986 6799999874 333 358889998899999999999864
No 67
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.30 E-value=8.8e-10 Score=111.58 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=47.1
Q ss_pred ccchhHHHHHHHHcC-cEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.| ++|+.+++|++|+.. ++.+ .|++.+|+++.+|.||.|.|.+.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEeCCCCC
Confidence 467788888888887 999999999999873 4444 47888998899999999998753
No 68
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.30 E-value=9.4e-11 Score=121.97 Aligned_cols=58 Identities=22% Similarity=0.165 Sum_probs=47.2
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc--CC--cEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~--~G--~~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|+++++|++|.. +++++++|... +| .++.|+.||+|+|.+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 45888999999999999999999999986 56777777653 43 2689999999998654
No 69
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.30 E-value=1.9e-09 Score=109.75 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=48.9
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH-HhhcCC
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 346 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~-~~~ll~ 346 (540)
..+.+.|.+.+.+.|++|+.+++|++|+.++++ + .|++.+|+++.||.||.|.|.+. +.+++.
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 356667888888889999999999999874443 3 47888888899999999999854 344443
No 70
>PRK06847 hypothetical protein; Provisional
Probab=99.29 E-value=1.1e-09 Score=110.33 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=46.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.|++|+++++|++|+.. ++. +.|++.+|+++.+|.||.|+|.+.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQD-DDG-VTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCE-EEEEEcCCCEEEcCEEEECcCCCc
Confidence 456777888888889999999999999873 333 357888898899999999999854
No 71
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.29 E-value=1.1e-09 Score=110.78 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=49.0
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH-HhhcC
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 345 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~-~~~ll 345 (540)
..+.+.|.+.+.+. |++++.+++|++|+.+++ .+ .|++.+|+++.||.||.|.|.+. +.+.+
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~-~~-~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQD-YV-RVTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC-eE-EEEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 56888888888884 999999999999987444 33 47788888899999999999864 34444
No 72
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.29 E-value=4e-11 Score=112.66 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=47.9
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcC-----------CcEEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----------GNVIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~-----------G~~i~a~~VI~A~~~~~ 340 (540)
...+...|.+.+.+.|++|++++.|+++..++++++.+|.+.. ..++.|+.||.|||.+.
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 3577888999999999999999999999874554777776531 24799999999999765
No 73
>PRK07121 hypothetical protein; Validated
Probab=99.29 E-value=1.4e-10 Score=120.78 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=48.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcC-Cc--EEEc-CEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~-G~--~i~a-~~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|+++++|++|..++++++++|...+ |+ ++.| +.||+|||.+.
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 568889999999999999999999999875567888887643 32 5889 99999998754
No 74
>PLN02697 lycopene epsilon cyclase
Probab=99.28 E-value=3.6e-09 Score=109.07 Aligned_cols=211 Identities=11% Similarity=0.041 Sum_probs=109.6
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhcc
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKL 361 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~ 361 (540)
..|.+.|.+.+.+.|+++ ++++|++|..+++ .+..+++.+|+++.|+.||.|+|.+. .+++....... +.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S-~rl~~~~~~~~-------~~ 261 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGAAS-GRLLQYEVGGP-------RV 261 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCcCh-hhhhccccCCC-------Cc
Confidence 456677888888889998 7889999987434 33335667787899999999999987 33333111000 01
Q ss_pred CCcCeEEEEEEeccc-cccccCcceeecCCce-eEEeccCcccc--ccc-C--CCccEEEEE-eeccccccCCChHHHHH
Q 009198 362 VGVPVINIHIWFDRK-LKNTYDHLLFSRSSLL-SVYADMSLTCK--EYY-N--PNQSMLELV-FAPAEEWISCSDSEIID 433 (540)
Q Consensus 362 ~~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~--~~~-~--~~~~~~~~~-~~~~~~~~~~~~e~~~~ 433 (540)
.......+.+.+..+ +-.+. .+++....+. .-........+ -|. | ++...+.-+ +.. -..++.+++.+
T Consensus 262 ~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~---~~~l~~~~l~~ 337 (529)
T PLN02697 262 CVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLAS---KDAMPFDLLKK 337 (529)
T ss_pred ccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeecc---CCCCCHHHHHH
Confidence 122333444555432 21111 1111101000 00000000000 000 1 111222111 111 12345678888
Q ss_pred HHHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCC---CchHHHHHH
Q 009198 434 ATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYL---ASMEGAVLS 510 (540)
Q Consensus 434 ~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~---~~~~ga~~s 510 (540)
.+.+.|.+. +.. ..+++...+..-|.+. ..+. . .+++..+|+.....++ .++-.++.+
T Consensus 338 ~L~~~l~~~-Gi~------~~~i~~~E~g~iPm~g---------~~~~--~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~ 398 (529)
T PLN02697 338 RLMSRLETM-GIR------ILKTYEEEWSYIPVGG---------SLPN--T-EQKNLAFGAAASMVHPATGYSVVRSLSE 398 (529)
T ss_pred HHHHHHHhC-CCC------cceEEEEEeeeecCCC---------CCcc--c-CCCeeEeehhhcCCCCchhhhHHHHHHh
Confidence 888888874 421 1234444433333321 1111 1 2467788887765554 378888899
Q ss_pred HHHHHHHHHHHHhHH
Q 009198 511 GKLCAQAIVQDYVLL 525 (540)
Q Consensus 511 g~~aA~~v~~~l~~~ 525 (540)
|..+|+.|.+.++..
T Consensus 399 A~~~A~~ia~~l~~~ 413 (529)
T PLN02697 399 APKYASVIARILKNV 413 (529)
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999999988744
No 75
>PRK06185 hypothetical protein; Provisional
Probab=99.28 E-value=2.3e-09 Score=109.36 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEE--cCCc-EEEcCEEEEccCHHH-HhhcCC
Q 009198 283 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VIDGDAYVFATPVDI-LKLQLP 346 (540)
Q Consensus 283 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~--~~G~-~i~a~~VI~A~~~~~-~~~ll~ 346 (540)
.+.+.|.+.+.+. |++++.+++|+++.. +++.+++|.+ .+|+ +++|+.||.|.|.+. +.+.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~-~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIE-EGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 5566677777664 799999999999987 4555544443 4664 799999999998864 344443
No 76
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.28 E-value=2.1e-09 Score=109.98 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=35.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
+.++||+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 45789999999999999999999999999999998764
No 77
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.28 E-value=1.4e-09 Score=110.09 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=45.1
Q ss_pred ccchhHHHHHHHHcC-cEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.| ++++ ++.|++|+.+++ .+ .|++.+|+++.||.||.|.|.+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPD-AA-TLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-eE-EEEECCCCEEEeeEEEEeCCCCc
Confidence 467778888888887 8888 999999986333 33 58888887899999999999853
No 78
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.27 E-value=4.8e-10 Score=111.27 Aligned_cols=200 Identities=15% Similarity=0.138 Sum_probs=113.6
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhc
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 360 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~ 360 (540)
|.+++..|++.+.++|++|+.+++|++|.. +++.+++|.+.+| ++.||+||+|+|+++ ..|.+. +
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~-~~l~~~---~--------- 200 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWA-GELLPL---P--------- 200 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhh-hhcccC---C---------
Confidence 789999999999999999999999999997 5666777888888 799999999999998 455541 1
Q ss_pred cCCcCeEEEEEEeccccccccCcceeecCCceeEEeccCcccccccCCCccEEEEEeeccccccCCChHHHHHHHHHHHH
Q 009198 361 LVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELA 440 (540)
Q Consensus 361 ~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~~~l~ 440 (540)
+.... ...+.+..+.....+. +......+...+.. ..+.+..++.... ....+....+++..+.+++.+.
T Consensus 201 ~~~~~--g~~~~~~~~~~~~~~~------~~~~~~~~~~~y~~-p~~~g~~~iG~~~-~~~~~~~~~~~~~~~~l~~~~~ 270 (337)
T TIGR02352 201 LRPVR--GQPLRLEAPAVPLLNR------PLRAVVYGRRVYIV-PRRDGRLVVGATM-EESGFDTTPTLGGIKELLRDAY 270 (337)
T ss_pred ccccC--ceEEEeeccccccCCc------ccceEEEcCCEEEE-EcCCCeEEEEEec-cccCccCCCCHHHHHHHHHHHH
Confidence 11111 1112232211000000 00000000000000 0112333333222 2233433345677889999999
Q ss_pred HhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHH
Q 009198 441 KLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 520 (540)
Q Consensus 441 ~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~ 520 (540)
+++|.... ..+...-.+++...++..+..-. ....+|+|+++.+.. .|+.-+...|+..|+.|+.
T Consensus 271 ~~~P~l~~----------~~~~~~~~g~r~~t~D~~piig~-~~~~~~~~~~~g~~g----~G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 271 TILPALKE----------ARLLETWAGLRPGTPDNLPYIGE-HPEDRRLLIATGHYR----NGILLAPATAEVIADLILG 335 (337)
T ss_pred HhCCCccc----------CcHHHheecCCCCCCCCCCEeCc-cCCCCCEEEEccccc----CceehhhHHHHHHHHHHhc
Confidence 99996321 11111112233333332221111 112578999986543 4788888999999999874
No 79
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.27 E-value=1.1e-10 Score=109.19 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=46.5
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCC-cEEEEEEcC-----------CcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTN-----------GNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~-~~~~V~~~~-----------G~~i~a~~VI~A~~~~~ 340 (540)
..+...|.+.+.+.|++|+.++.|+++..++++ ++.+|.+.. ..++.|+.||.|||...
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 467778888888999999999999999874442 677887642 23789999999999643
No 80
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.27 E-value=1.5e-09 Score=110.06 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=44.9
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+. |++++.+++|+++...++ . +.|++.+|++++||.||.|.|.+.
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~-~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQALQRDDD-G-WELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCC-e-EEEEECCCCEEEeCEEEEeCCCCc
Confidence 34556777777766 899999999999986333 3 357788888899999999999865
No 81
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.26 E-value=2.6e-09 Score=107.76 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=50.1
Q ss_pred ccchhHHHHHHHHcC-cEEEeCcceeEEEEccCCcEEEEEEc-CCcEEEcCEEEEccCHHH-HhhcCC
Q 009198 282 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVDI-LKLQLP 346 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~~~-~G~~i~a~~VI~A~~~~~-~~~ll~ 346 (540)
..+.+.|.+.+.+.+ ++++.+++|+.++.+ ++.+. |++. +|+++.||.||-|-|.+. +++.++
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 467788888888876 899999999999984 44454 7777 998999999999998753 444554
No 82
>PRK06184 hypothetical protein; Provisional
Probab=99.26 E-value=1.6e-09 Score=113.29 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=45.6
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCcEEEcCEEEEccCHHH-HhhcCC
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI-LKLQLP 346 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~~i~a~~VI~A~~~~~-~~~ll~ 346 (540)
.+-..|.+.+.+.|++|+++++|++|+.++++ + .+++ .++++++||.||.|.|.+. +.+.+.
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 34556777888889999999999999874444 3 2444 4556899999999999864 344443
No 83
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.25 E-value=4.9e-09 Score=101.90 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=44.0
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc-CCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~-~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.|++++.+++|+++..+++ .+ .+.+. ++.+++||.||.|+|.+.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence 46777888888889999999999999987444 33 24333 345799999999999853
No 84
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.24 E-value=1.9e-09 Score=109.74 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=47.4
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.|++|+.+++|++|+.+ ++.+ .|++.+|+++.||.||.|.|.+.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEEcCCCCh
Confidence 567888888888889999999999999863 3333 57788888899999999998754
No 85
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.24 E-value=4e-10 Score=114.12 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=44.1
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.++..+++++|++++.+++ .+ .|++.+|+++.||.||.|.|.+.
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPRED-EV-TVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCC-eE-EEEECCCCEEEEeEEEEecCCCc
Confidence 45677788888777544488999999987444 34 47888888899999999999853
No 86
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.23 E-value=1.5e-08 Score=103.47 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=35.0
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 53 ~~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
....++||+|||||++|++||+.|++.|++|+|+|++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34678999999999999999999999999999999974
No 87
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.23 E-value=1.8e-10 Score=119.25 Aligned_cols=57 Identities=28% Similarity=0.335 Sum_probs=47.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc--CC--cEEEcCEEEEccCHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 339 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~--~G--~~i~a~~VI~A~~~~ 339 (540)
..++..|.+.+++.|++|+++++|++|.. +++++++|.+. +| ..+.|+.||+|+|.+
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 57888999999999999999999999987 56788888763 33 368999999999864
No 88
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.23 E-value=5.1e-11 Score=119.13 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=53.2
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
|+.++++|+..+.+.|+.|..|++|++|.. ++++..+|.|..| .|++.+||.|+|.|+
T Consensus 186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 186 PAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc-ceecceEEechhHHH
Confidence 889999999999999999999999999998 4445569999999 699999999999997
No 89
>PRK07190 hypothetical protein; Provisional
Probab=99.23 E-value=7.8e-09 Score=106.86 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=45.6
Q ss_pred chhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH-HhhcCC
Q 009198 284 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 346 (540)
Q Consensus 284 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~-~~~ll~ 346 (540)
+-..|.+.+.+.|++|+.+++|++|+.++++ + .+++.+|++++|+.||.|.|... +.+.+.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v-~v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-C-LTTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-e-EEEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 3344666777889999999999999874444 3 35667788899999999999854 344443
No 90
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.22 E-value=8.2e-11 Score=120.98 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=48.4
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc--CCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~--~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|+++++|++|..++++++++|... +|+ .+.++.||+|+|.+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 46889999999999999999999999998556777776653 443 378999999998765
No 91
>PRK09126 hypothetical protein; Provisional
Probab=99.22 E-value=1.9e-09 Score=109.41 Aligned_cols=56 Identities=20% Similarity=0.174 Sum_probs=42.5
Q ss_pred cchhHHHHHHHH-cCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+.+.|.+.+.+ .|++|+.+++|++++.. ++.+ .|++.+|+++.||.||.|.|...
T Consensus 111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~~-~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDGA-QVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred HHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCeE-EEEEcCCCEEEeCEEEEeCCCCc
Confidence 344555666544 58999999999999873 3333 57888888999999999999853
No 92
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.22 E-value=3.2e-09 Score=98.18 Aligned_cols=39 Identities=33% Similarity=0.429 Sum_probs=34.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC----CCceEEEecCCCCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLG 93 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~----g~~v~v~E~~~~~g 93 (540)
+..+||+|||||.+|+++|+.|.++ |.+|+|+|+.+...
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 4689999999999999999999874 79999999987643
No 93
>PRK07588 hypothetical protein; Provisional
Probab=99.22 E-value=4.7e-09 Score=106.33 Aligned_cols=55 Identities=18% Similarity=0.139 Sum_probs=41.6
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.|...|.+.+. .|++|+++++|++|+.. ++.+ .|++.+|+++.+|.||-|.|.+.
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEH-RDGV-RVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEEC-CCeE-EEEECCCCEEEeCEEEECCCCCc
Confidence 34445555443 37999999999999874 4444 48888998899999999999754
No 94
>PRK08244 hypothetical protein; Provisional
Probab=99.22 E-value=2.6e-09 Score=111.50 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCc
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 132 (540)
++||+|||||++||++|..|++.|++|+|+|+++...-... + ....+...++++++|+.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~r-------------a---~~l~~~~~e~l~~lGl~~ 61 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSK-------------A---LTLHPRTLEILDMRGLLE 61 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcc-------------e---eEecHHHHHHHHhcCcHH
Confidence 47999999999999999999999999999999865321100 0 122445678888988764
No 95
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.22 E-value=7.4e-11 Score=103.44 Aligned_cols=42 Identities=43% Similarity=0.558 Sum_probs=35.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
.++||+|||||++||+||++|++.|++|+|+|++..+||...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 568999999999999999999999999999999998888653
No 96
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.21 E-value=1.7e-10 Score=118.71 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=51.1
Q ss_pred eeeecCC--CCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCC--cEEEcCEEEEccCHHH
Q 009198 273 MAFLDGN--PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDI 340 (540)
Q Consensus 273 ~~~~~gg--~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G--~~i~a~~VI~A~~~~~ 340 (540)
+..+.++ .+..++.+|.+.++++|++|+++++|++|+..+++.+ .|++ .+| .++.|++||+|+|.+.
T Consensus 167 l~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 167 NWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 3344444 3789999999999999999999999999987444433 2432 334 2699999999999987
No 97
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.21 E-value=9.1e-09 Score=104.18 Aligned_cols=61 Identities=31% Similarity=0.442 Sum_probs=46.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC--CcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcc
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~--gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 133 (540)
++||+|||||++|+++|..|++.|++|+|+|+++.. .+. .++..+ .++..++++++|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-------------~~a~~l---~~~~~~~l~~lGl~~~ 64 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGR-------------IRAGVL---EQGTVDLLREAGVGER 64 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccc-------------cceeEE---CHhHHHHHHHcCChHH
Confidence 579999999999999999999999999999998742 111 112222 3456788899998653
No 98
>PRK06834 hypothetical protein; Provisional
Probab=99.21 E-value=3.6e-09 Score=109.51 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+-..|.+.+++.|++|+.+++|++|+.+++ .+ .|++.+|++++||.||.|.|.+.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~-~v-~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDT-GV-DVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-eE-EEEECCCCEEEeCEEEEecCCCC
Confidence 3555677777788999999999999987444 33 47777887899999999998864
No 99
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.21 E-value=4.5e-10 Score=115.61 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=47.8
Q ss_pred CccchhHHHHHHHHcC-cEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
+..++..|.+.+++.| ++|+++++|++|+..+++.+ .|++ .+|+ ++.|++||+|+|.+.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 6789999999999987 79999999999997555533 3443 3453 699999999999987
No 100
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.20 E-value=1.2e-08 Score=103.25 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=44.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.|++++ ++.|+++..+++ ..+.|++.+|++++|+.||.|+|.+.
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGV-ALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-ceeEEEeCCCCEEEeCEEEECCCCch
Confidence 4667778888888888885 668999886323 34468888887899999999999875
No 101
>PRK08013 oxidoreductase; Provisional
Probab=99.20 E-value=1.5e-08 Score=102.94 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=46.7
Q ss_pred cchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH-HhhcC
Q 009198 283 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 345 (540)
Q Consensus 283 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~-~~~ll 345 (540)
.+...|.+.+.+. |++++++++|++|+.++++ +.|++.+|++++||.||-|-|.+. +++.+
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence 4666777777775 7999999999999874443 357788898999999999998753 34444
No 102
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.19 E-value=3.1e-10 Score=115.83 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=46.4
Q ss_pred CccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEE---EcCCc--EEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~---~~~G~--~i~a~~VI~A~~~~~ 340 (540)
+..+.++|.+.+.+. |++|+++++|++|...+++.+ .|+ +.+|+ ++.||+||+|+|.|.
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcch
Confidence 568899999999654 899999999999987535443 243 44553 699999999999988
No 103
>PRK06126 hypothetical protein; Provisional
Probab=99.19 E-value=7e-09 Score=109.68 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=47.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcc
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 133 (540)
+..+||+|||||++||++|..|++.|++|+|+|+++...-.. .+. ...+...++++++|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~-------------ra~---~l~~r~~e~L~~lGl~~~ 67 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNP-------------KAN---TTSARSMEHFRRLGIADE 67 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCC-------------ccc---cCCHHHHHHHHhcChHHH
Confidence 567899999999999999999999999999999875322100 011 123456778888887654
No 104
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.18 E-value=1.4e-08 Score=107.04 Aligned_cols=63 Identities=30% Similarity=0.403 Sum_probs=48.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcc
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 133 (540)
...+||+|||||++||++|..|++.|++|+|+|+++.+....+. ....+...++++++|+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra----------------~~l~~~~~~~L~~lGl~~~ 70 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRA----------------VGIDDEALRVLQAIGLADE 70 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCce----------------eeeCHHHHHHHHHcCChhH
Confidence 46789999999999999999999999999999998765432111 0113456788888887654
No 105
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.16 E-value=8.5e-10 Score=110.30 Aligned_cols=64 Identities=28% Similarity=0.346 Sum_probs=44.6
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc-CC--cEEEcCEEEEccCHHH-HhhcC
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NG--NVIDGDAYVFATPVDI-LKLQL 345 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~-~G--~~i~a~~VI~A~~~~~-~~~ll 345 (540)
..+.+.|.+.+++.|++|+.+++|++++.+.++..+.+... +| +++.||.||-|-|.+. +++.+
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l 178 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQL 178 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHT
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhc
Confidence 45777888888999999999999999987544422223322 34 2689999999999864 34444
No 106
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.16 E-value=1.3e-09 Score=111.38 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc---CCc--EEEcCEEEEccCHHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDIL 341 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~---~G~--~i~a~~VI~A~~~~~~ 341 (540)
..++..|.+.+++.|++|+++++|+++.. +++++++|... +|+ +|.|+.||+|||....
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 56889999999999999999999999998 67799998876 454 5789999999988663
No 107
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.16 E-value=9.9e-09 Score=103.61 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=42.6
Q ss_pred chhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 284 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 284 l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
+-..|.+.+.+. |++++.+++|++++.++++ + .|++.+|+++.||.||.|.|.+.
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCCc
Confidence 444566665554 6899999999999874443 3 48888998999999999999854
No 108
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.15 E-value=1.1e-08 Score=104.01 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=45.3
Q ss_pred chhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH-HhhcCC
Q 009198 284 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 346 (540)
Q Consensus 284 l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~-~~~ll~ 346 (540)
+...|.+.+.+. |++++.+++|++|+.+++ . +.|++.+|++++||.||.|.|.+. +.+.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-~-~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGES-E-AWLTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC-e-EEEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 445666666664 699999999999987433 3 358888998999999999999743 344443
No 109
>PLN02661 Putative thiazole synthesis
Probab=99.13 E-value=1.3e-09 Score=104.67 Aligned_cols=42 Identities=38% Similarity=0.411 Sum_probs=37.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CCceEEEecCCCCCcc
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGK 95 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~-g~~v~v~E~~~~~gG~ 95 (540)
...++||+|||||++|++||++|++. |++|+|+|+...+||.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 35678999999999999999999986 8999999999888773
No 110
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=2.2e-09 Score=114.29 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=44.0
Q ss_pred hHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009198 286 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 286 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~---~G~--~i~a~~VI~A~~~~~ 340 (540)
+.|.+.+++.|++|++++.|+++.. +++++++|... +|+ .+.|+.||+|||.+.
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 5566677788999999999999987 56788888764 453 588999999998865
No 111
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.12 E-value=3e-09 Score=112.26 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=48.0
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcC-Cc--EEEcC-EEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGD-AYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~-G~--~i~a~-~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|+++++|++|..+++|++++|...+ |+ +|.|+ .||+|||.+.
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 567888888888899999999999999986678898886643 32 47887 5999997754
No 112
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.11 E-value=6.7e-08 Score=102.19 Aligned_cols=65 Identities=31% Similarity=0.382 Sum_probs=48.8
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCc
Q 009198 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (540)
Q Consensus 53 ~~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 132 (540)
..+.++||+|||||++||++|+.|++.|++|+|+|+++........ ....+...++++++|+..
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra----------------~~l~~~~~~~l~~lGl~~ 82 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRA----------------ICFAKRSLEIFDRLGCGE 82 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeE----------------EEEcHHHHHHHHHcCCcH
Confidence 3457789999999999999999999999999999998754321111 011345678888988765
Q ss_pred c
Q 009198 133 R 133 (540)
Q Consensus 133 ~ 133 (540)
.
T Consensus 83 ~ 83 (547)
T PRK08132 83 R 83 (547)
T ss_pred H
Confidence 3
No 113
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.11 E-value=8.7e-09 Score=103.58 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=46.3
Q ss_pred ccchhHHHHHHHHcC-cEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH-HhhcC
Q 009198 282 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 345 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~-~~~ll 345 (540)
..|...|.+.+.+.+ +++++++.|++|..+++ .+ .|++.++ +++||.||-|-|.+. +++.+
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v-~v~~~~~-~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHND-YS-IIKFDDK-QIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC-eE-EEEEcCC-EEeeCEEEEeCCCCchhHHhc
Confidence 467777888887775 88999999999987444 33 4777777 899999999998853 33444
No 114
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.10 E-value=3.7e-08 Score=99.53 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
+||+|||||++|+++|+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 115
>PRK11445 putative oxidoreductase; Provisional
Probab=99.10 E-value=4.6e-08 Score=97.35 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=44.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 131 (540)
.+||+|||||++|+++|+.|++. ++|+|+|+++..+-.... . ..|+ ...++..+.++++|+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~-~-------~~g~----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFS-K-------PCGG----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcccccccc-C-------cCcC----ccCHHHHHHHHHcCCC
Confidence 37999999999999999999999 999999998754210000 0 0111 1234577788888875
No 116
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.10 E-value=3.1e-08 Score=100.58 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=41.9
Q ss_pred chhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 284 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 284 l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
+-+.|.+.+.+. |++++.+++|++|... ++.+ .|++.+|+++.+|.||.|.|.+.
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecCCCh
Confidence 344566666553 7999999999999863 3333 47888888899999999999864
No 117
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.10 E-value=3.1e-09 Score=111.39 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc-CCc--EEEc-CEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~-~G~--~i~a-~~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|+++++|+++.. +++++++|... +|+ .|.+ +.||+|||.+.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 67899999999999999999999999986 57888888543 343 3566 57999998765
No 118
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.10 E-value=1.8e-09 Score=110.02 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=45.6
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEE-EcCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFL-LTNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~-~~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.++ |++|+++++|++|.. +++++++|. +.+|+ ++.|+.||+|||...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 46788888888764 899999999999986 566777754 33454 589999999998843
No 119
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.09 E-value=4.1e-08 Score=100.71 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHcC---cEEEeCcceeEEEEc-----cCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLG---GEVRLNSRVQKIELN-----DDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G---~~i~~~t~V~~I~~~-----~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+...|.+.+.+.+ ++++.+++|++|+.. +++..+.|++.+|++++||.||-|-|.+.
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence 45566777777764 899999999999752 22333468889999999999999998854
No 120
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.08 E-value=1.1e-07 Score=96.10 Aligned_cols=35 Identities=43% Similarity=0.586 Sum_probs=32.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
+||+|||||++|++||+.|++.|++|+|+|++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 58999999999999999999999999999997543
No 121
>PRK12839 hypothetical protein; Provisional
Probab=99.08 E-value=5.9e-09 Score=109.66 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=48.1
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc--CCc-EEE-cCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VID-GDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~--~G~-~i~-a~~VI~A~~~~~ 340 (540)
...++..|.+.+.+.|++|+++++|++|..++++++++|... +|+ ++. ++.||+|+|.+.
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 357889999999999999999999999987557888888653 443 344 489999998765
No 122
>PRK06996 hypothetical protein; Provisional
Probab=99.08 E-value=1.8e-08 Score=102.27 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=47.2
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC---cEEEcCEEEEccCH--HHHhhcCC
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV--DILKLQLP 346 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G---~~i~a~~VI~A~~~--~~~~~ll~ 346 (540)
..+.+.|.+.+.+.|++++.+++|++++...++ + .|++.+| ++++||.||-|.|. ....+.+.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 467778888888889999999999999864443 3 4666654 58999999999884 34345443
No 123
>PLN02985 squalene monooxygenase
Probab=99.07 E-value=1.2e-07 Score=98.60 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=47.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcc
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 133 (540)
.+..+||+|||||++|+++|+.|++.|++|+|+|+......+. .| . ...++-.+.++++|+.+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~------------~g-~---~L~p~g~~~L~~LGl~d~ 103 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM------------MG-E---FMQPGGRFMLSKLGLEDC 103 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc------------cc-c---ccCchHHHHHHHcCCcch
Confidence 4678899999999999999999999999999999975321110 01 1 113345667888898753
No 124
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=3.5e-09 Score=111.87 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=49.2
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.|++|++++.|+++..+++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 5688889988888899999999999998755788888875 3564 578999999998865
No 125
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.07 E-value=3.7e-09 Score=111.82 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=48.1
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc--CCc-EEEc-CEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDG-DAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~--~G~-~i~a-~~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|+++++|++|.. +++++++|... ++. ++.| +.||+|+|.+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 56889999999999999999999999987 46788777653 332 5788 89999998875
No 126
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.07 E-value=3.1e-09 Score=111.43 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=48.1
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc-------CC-cEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~-------~G-~~i~a~~VI~A~~~~~ 340 (540)
..+...|.+.+++.|++|++++.|++|..++++++.+|.+. +| ..+.|+.||+|||.+.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 46888899999889999999999999987445688887653 22 3689999999998865
No 127
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.07 E-value=1.1e-09 Score=100.20 Aligned_cols=55 Identities=27% Similarity=0.347 Sum_probs=38.2
Q ss_pred chhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 284 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 284 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
+.+.|.+.+++.+.+++++++|++|...+++ +.|++.+|+++.|++||+|||...
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSC
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccC
Confidence 4444555666678889999999999986555 469999998899999999999654
No 128
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.07 E-value=5.5e-09 Score=94.57 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=48.6
Q ss_pred CccchhHHHHHHHHcC-cEEEeCcceeEEEEccCCcEEEEEEc---C-CcEEEcCEEEEccCHHHHhhcCCC
Q 009198 281 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT---N-GNVIDGDAYVFATPVDILKLQLPE 347 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~~~---~-G~~i~a~~VI~A~~~~~~~~ll~~ 347 (540)
|+.|+..+++.+.+.| |++..+ .|.+|.. +.+++..|... + +....++++|+++|+|+ .+|+|.
T Consensus 146 P~lFc~~i~sea~k~~~V~lv~G-kv~ev~d-Ek~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT-skllp~ 214 (380)
T KOG2852|consen 146 PYLFCHFILSEAEKRGGVKLVFG-KVKEVSD-EKHRINSVPKAEAEDTIIKADVHKIVVSAGPWT-SKLLPF 214 (380)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEe-eeEEeec-ccccccccchhhhcCceEEeeeeEEEEecCCCc-hhhccc
Confidence 8999999999999986 788766 6888874 55555555443 1 33567789999999999 777765
No 129
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.06 E-value=2.7e-09 Score=111.71 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=46.6
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEcc-CCcEEEEEEc-CCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~-~~~~~~V~~~-~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.++ |++|++++.|+++..++ ++++++|... +|+ .+.|+.||+|||...
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 56888898888765 89999999999998743 3788887654 453 378999999998853
No 130
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=2.5e-09 Score=112.57 Aligned_cols=58 Identities=16% Similarity=0.014 Sum_probs=48.3
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~---~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.|++|++++.++++.. ++|++++|... +|+ .+.|+.||+|||...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 46888898888888999999999999997 57889888764 332 578999999998865
No 131
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=5.1e-09 Score=110.94 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=49.1
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.|++|++++.|+++..++++++++|.. .+|+ .+.|+.||+|||...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688899999988999999999999998754578888864 3564 688999999998865
No 132
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.06 E-value=4e-09 Score=110.98 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=40.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
+.++||||||+|++|++||..+++.|.+|+|||+....||.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccc
Confidence 45889999999999999999999999999999999988887654
No 133
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.06 E-value=4.5e-09 Score=111.52 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=48.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.|++|+.++.++++..++++++++|.. .+|+ .+.|+.||+|||.+.
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 4688899999988999999999999988744678888865 3463 578999999998864
No 134
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.05 E-value=2.7e-09 Score=107.69 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=46.1
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
...+.+.|.+.+++.|++|+++++|++|.. +++ .+.|++ +++++.||.||+|+|...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~-~~~-~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKK-DDN-GFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEe-cCC-eEEEEE-CCcEEEcCEEEECCCCcc
Confidence 357888899999999999999999999976 333 345776 455799999999999754
No 135
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.05 E-value=6.1e-09 Score=110.53 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=49.0
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|++++.|+++..+++|++.+|.. .+|+ .+.|+.||+|||.+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 5788899999999999999999999988645778888864 3563 578999999998864
No 136
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.05 E-value=6.3e-08 Score=97.81 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=46.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcc
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 133 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.+...- .. +.++..+ .++..++++++|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~--~~---------~~~a~~l---~~~~~~~L~~lGl~~~ 64 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYV--LG---------RIRAGVL---EQGTVDLLREAGVDER 64 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCccc--CC---------ceeEeeE---CHHHHHHHHHCCChHH
Confidence 47999999999999999999999999999999874210 00 0122222 3356788899998654
No 137
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=1.1e-09 Score=100.75 Aligned_cols=239 Identities=20% Similarity=0.235 Sum_probs=131.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccC-CCCe-eeccceeeccCcccHHHHHHhcCCCccc
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDW-YETGLHIFFGAYPNIQNLFGELGINDRL 134 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~-~g~~-~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 134 (540)
++|++|||||++|+.+|..|++.|++|+|+|+++.+||.+.+.... .|.. .-.|+|+++.....+++.+..+---...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~~~Y 80 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEFNPY 80 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhhhhh
Confidence 4799999999999999999999999999999999999998875432 4444 5679999998888888887765321111
Q ss_pred ccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHHHHH
Q 009198 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (540)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (540)
..+. +.+. .+.. -.+|..+..+..++... ..++..+.+...... .....+..++++-..
T Consensus 81 ~hrV----la~~--ng~~------~~lP~nl~ti~ql~G~~---~~p~~a~~~i~~~~~------~~~~~~~q~~ee~ai 139 (374)
T COG0562 81 QHRV----LALV--NGQL------YPLPFNLNTINQLFGKN---FTPDEARKFIEEQAA------EIDIAEPQNLEEQAI 139 (374)
T ss_pred ccce----eEEE--CCee------eeccccHHHHHHHhCcc---CCHHHHHHHHHHhhc------cccccchhhhhhHHH
Confidence 1000 0000 1110 01444455555554311 111111111110000 001111223333333
Q ss_pred HhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh-hcc-Cc-ceeeecCCCCccchhHHHHH
Q 009198 215 KQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-EKH-GS-KMAFLDGNPPERLCLPIVEH 291 (540)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~-g~-~~~~~~gg~~~~l~~~l~~~ 291 (540)
+. +...+.+.++..+....|+.+++++++......-..+.. ..+ .. --..|.+| ....+.+.
T Consensus 140 s~-----------vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~G----YT~~~~kM 204 (374)
T COG0562 140 SL-----------VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDG----YTAMFEKM 204 (374)
T ss_pred HH-----------HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCcccc----HHHHHHHH
Confidence 32 445566777777777888999999887654332111110 000 00 01123333 23333333
Q ss_pred HHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009198 292 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 292 l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ 343 (540)
+.....++++||.-..+... . + .+.+..||.|-+...+-.
T Consensus 205 l~hp~I~V~Lntd~~~~~~~-~---------~--~~~~~~VvytG~iD~~Fd 244 (374)
T COG0562 205 LDHPNIDVRLNTDFFDVKDQ-L---------R--AIPFAPVVYTGPIDAYFD 244 (374)
T ss_pred hcCCCceEEecCcHHHHhhh-h---------c--ccCCCceEEecchHhhhc
Confidence 34446889999877666431 1 1 155668999888776443
No 138
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.05 E-value=6.6e-09 Score=109.99 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=47.2
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcC--Cc-EEEcC-EEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN-VIDGD-AYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~--G~-~i~a~-~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|+++++|++|.. +++++++|.+.+ ++ .+.++ .||+|+|.+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 46888899999999999999999999987 567888887654 32 47785 7999998764
No 139
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.04 E-value=1.4e-08 Score=102.44 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=52.3
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 345 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll 345 (540)
+.+++..|.+.+.+ |++|+++++|++|+. +++. +.|++.+|+++.||+||+|+|.++ ..++
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~-~~~~-~~v~t~~g~~~~a~~vV~a~G~~~-~~l~ 194 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLER-DGEG-WQLLDANGEVIAASVVVLANGAQA-GQLA 194 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEE-cCCe-EEEEeCCCCEEEcCEEEEcCCccc-cccc
Confidence 78999999999999 999999999999987 3444 468888997799999999999998 4444
No 140
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.03 E-value=4.6e-09 Score=106.72 Aligned_cols=57 Identities=25% Similarity=0.284 Sum_probs=45.4
Q ss_pred ccchhHHHHHHHHcC-cEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+.+.+ ++++++++|+++..+ ++.+ .|++.+|+++.||.||.|.|.+.
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEECCCcCh
Confidence 456677888877765 899999999999863 3334 47788888899999999999864
No 141
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.03 E-value=1.1e-07 Score=101.53 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=47.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHH-CCCceEEEecCCCCC--cceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDVLG--GKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~-~g~~v~v~E~~~~~g--G~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 131 (540)
+.++||+|||||++||++|..|++ .|.+|+|+|+++... |+. .+..+...++++.+|+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA------------------~gl~prtleiL~~lGl~ 91 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQA------------------DGIACRTMEMFQAFGFA 91 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCee------------------eEEChHHHHHHHhccch
Confidence 567899999999999999999999 499999999975421 111 02245678889999987
Q ss_pred cc
Q 009198 132 DR 133 (540)
Q Consensus 132 ~~ 133 (540)
..
T Consensus 92 d~ 93 (634)
T PRK08294 92 ER 93 (634)
T ss_pred HH
Confidence 54
No 142
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.03 E-value=4.8e-09 Score=111.17 Aligned_cols=58 Identities=22% Similarity=0.181 Sum_probs=47.9
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..+...|.+.+.+.|++|++++.|++|.. +++++++|.. .+|+ .+.|+.||+|||.+.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 46788888888888999999999999987 4678877754 3564 589999999999864
No 143
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.02 E-value=6.8e-09 Score=107.76 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=47.5
Q ss_pred ccchhHHHHHHHH-cCcEEEeCcceeEEEEccCCcEEEEEEcC-C--cEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~~~~-G--~~i~a~~VI~A~~~~~ 340 (540)
..+...|.+.+++ .|++|++++.|++|.. +++.+++|.+.+ + .++.|+.||+|||.+.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 5688889998887 5899999999999987 466777776654 3 3689999999999875
No 144
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.02 E-value=5.8e-08 Score=97.29 Aligned_cols=197 Identities=17% Similarity=0.110 Sum_probs=102.3
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhcc
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKL 361 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~ 361 (540)
..|-+.+.+.+. .++.+++++.|++|+..++ ...|++.+|++++|+.||-|.|.... ... . .
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~----~~~--~---------~ 148 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP----KAR--P---------L 148 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc----ccc--c---------c
Confidence 356666777777 4567789999999997434 33588999989999999999995442 110 0 0
Q ss_pred CCcCeEEEEEEeccccccccCcceee-----c-CCceeEEeccCcccccccCCCccEEEEE-eeccccccCCChHHHHHH
Q 009198 362 VGVPVINIHIWFDRKLKNTYDHLLFS-----R-SSLLSVYADMSLTCKEYYNPNQSMLELV-FAPAEEWISCSDSEIIDA 434 (540)
Q Consensus 362 ~~~~~~~i~l~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~ 434 (540)
.......+.+.++++........++. . .+...+|.-+ ..++..++..+ +++ -..++.+++.++
T Consensus 149 ~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP-------~~~~~alvE~T~fs~---~~~~~~~~~~~~ 218 (374)
T PF05834_consen 149 GLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLP-------FSEDRALVEETSFSP---RPALPEEELKAR 218 (374)
T ss_pred ccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEE-------cCCCeEEEEEEEEcC---CCCCCHHHHHHH
Confidence 11123344555666532221111111 0 1111111100 01233444332 332 223578899999
Q ss_pred HHHHHHHhCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHH
Q 009198 435 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 514 (540)
Q Consensus 435 v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~a 514 (540)
+.+.|++ ++.. ..++++...-.-|.+.....+ ...+++...|+.....++ ..--++....+.
T Consensus 219 l~~~l~~-~g~~------~~~i~~~E~G~IPm~~~~~~~----------~~~~~v~~iG~agG~v~P-sTGYs~~~~~~~ 280 (374)
T PF05834_consen 219 LRRYLER-LGID------DYEILEEERGVIPMTTGGFPP----------RFGQRVIRIGTAGGMVKP-STGYSFARIQRQ 280 (374)
T ss_pred HHHHHHH-cCCC------ceeEEEeecceeecccCCCcc----------ccCCCeeeEEccccCCCC-cccHHHHHHHHH
Confidence 9999999 5532 112333332222221111111 112346666655433332 334556677777
Q ss_pred HHHHHHHHhH
Q 009198 515 AQAIVQDYVL 524 (540)
Q Consensus 515 A~~v~~~l~~ 524 (540)
|++|.+.+..
T Consensus 281 a~~ia~~l~~ 290 (374)
T PF05834_consen 281 ADAIADALAK 290 (374)
T ss_pred HHHHHHHHhh
Confidence 7777777765
No 145
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.02 E-value=6e-09 Score=109.56 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=47.5
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc-CCc--EEEcC-EEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~-~G~--~i~a~-~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|+++++|++|.. +++++++|... +|+ .+.|+ .||+|||...
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 46888999999999999999999999997 57788888764 343 47785 7999997754
No 146
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.02 E-value=1.3e-09 Score=107.64 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=52.7
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC--cEEEcCEEEEccCHHHHhhcC
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDILKLQL 345 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G--~~i~a~~VI~A~~~~~~~~ll 345 (540)
.++.+.|.+.++++|++|+.+++|+++.. ++++++.|.+.++ .++.||+||+|+|.|.-..|+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 57889999999999999999999999987 5667777887776 479999999999999435443
No 147
>PLN02815 L-aspartate oxidase
Probab=99.01 E-value=5.4e-09 Score=109.93 Aligned_cols=59 Identities=8% Similarity=0.016 Sum_probs=45.6
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEccCC---cEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDG---TVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~---~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+. |++|++++.++++..++++ ++++|.. .+|+ .+.|+.||+|||.+.
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 45788888888765 8999999999999874444 2778765 3553 568999999998764
No 148
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=1.8e-08 Score=106.58 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=48.6
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.|++|+.++.|+++..++++++++|.. .+|+ .+.|+.||+|||...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 4688889998888999999999999998755678888865 3453 578999999998865
No 149
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=4.9e-09 Score=110.87 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=48.0
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.|++|++++.|+++.. +++++.+|.. .+|+ .+.|+.||+|||.+.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 56888999999888999999999999987 5677777653 4564 589999999998865
No 150
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.99 E-value=1.3e-08 Score=104.87 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=46.7
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.|.+.+++.|++++.+ .|+.+.. +++++++|.+ +|+.+.++.||+|||.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 568889999999999999876 7999876 5677777877 555799999999999876
No 151
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=1.6e-08 Score=106.44 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=47.2
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|++++.|+++..++++++++|.. .+|+ .+.|+.||+|||...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 4678888888888899999999999998744445777653 4564 589999999998864
No 152
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.99 E-value=3.1e-08 Score=104.77 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=47.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC-c--EEEc-CEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N--VIDG-DAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G-~--~i~a-~~VI~A~~~~~ 340 (540)
..++..|.+.+++.|++|+++++|+++.. +++++++|.+.++ + ++.| +.||+|||.+.
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 57889999999999999999999999986 4778888876543 2 4776 68999998754
No 153
>PRK07538 hypothetical protein; Provisional
Probab=98.99 E-value=4.9e-07 Score=92.25 Aligned_cols=59 Identities=36% Similarity=0.561 Sum_probs=44.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 132 (540)
+||+|||||++||++|..|++.|++|+|+|+++.+.-. | .|. ...++..+.++++|+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--------g----~gi----~l~p~~~~~L~~lgl~~ 59 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPL--------G----VGI----NLLPHAVRELAELGLLD 59 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccccc--------C----cce----eeCchHHHHHHHCCCHH
Confidence 58999999999999999999999999999998654310 0 111 11345667778888754
No 154
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.97 E-value=1.6e-08 Score=106.54 Aligned_cols=42 Identities=48% Similarity=0.718 Sum_probs=38.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC--CCCccee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLGGKIA 97 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~--~~gG~~~ 97 (540)
.++||||||+|.+||+||..+++.|.+|+|||+.+ ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 57899999999999999999999999999999999 7788654
No 155
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.97 E-value=6.1e-09 Score=106.42 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=47.6
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.++-+.|.+.+.+.|++++.+ .|+++..+++|.+..|++.+|+++.||.||=|+|...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 578888999999999999877 5888888788888899999999999999999999864
No 156
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.97 E-value=3.1e-09 Score=113.36 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=47.2
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..+...|.+.+.+.|++|+.+++|++|.. +++++++|.. .+|+ .+.|+.||+|||.+.
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 45777888888889999999999999997 5678877765 3564 467999999998865
No 157
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.97 E-value=6.6e-09 Score=107.16 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=45.8
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+...+.+.+.+. |+++ .++.|++|.. +++++.+|.+.+|..+.|+.||+|+|.+.
T Consensus 100 ~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 100 KLYRAAMREILENQPNLDL-FQGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHHcCCCcEE-EEeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 34556677777665 6787 4678999987 56778899999999999999999999865
No 158
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.96 E-value=1.9e-07 Score=94.86 Aligned_cols=60 Identities=40% Similarity=0.525 Sum_probs=45.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 133 (540)
.+|+|||||++||++|..|++.|++|+|+|+.+...- .| .|. ...++..++++++|+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~--------~g----~gi----~l~~~~~~~L~~~Gl~~~ 62 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE--------VG----AGL----QLAPNAMRHLERLGVADR 62 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc--------CC----ccc----eeChhHHHHHHHCCChHH
Confidence 5899999999999999999999999999999865421 01 111 123467788888887643
No 159
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=1.3e-08 Score=108.31 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=37.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcce
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~ 96 (540)
.++||+|||||++||+||..+++.|.+|+|+|+....+|.+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s 47 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHT 47 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcc
Confidence 56899999999999999999999999999999998766643
No 160
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=1.2e-08 Score=107.92 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=48.4
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccC---CcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~---~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.|++|++++.|++|..+++ +++++|.. .+|+ .+.|+.||+|||...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 56888899999889999999999999987442 78888865 3554 578999999998865
No 161
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.95 E-value=5.7e-09 Score=106.63 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=39.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
...++|+|||||++||+||.+|++.|++|+|+|+++.+||....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34679999999999999999999999999999999999986643
No 162
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=1.4e-08 Score=107.55 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=45.7
Q ss_pred ccchhHHHHHHHHcC----cEEEeCcceeEEEEccCCcEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLG----GEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G----~~i~~~t~V~~I~~~~~~~~~~V~~~---~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.+ ++++.++.++++..+++|++++|... +|+ .+.|+.||+|||...
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 467778877776543 78999999999987557889888764 343 478999999998865
No 163
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.94 E-value=3.9e-08 Score=102.64 Aligned_cols=42 Identities=36% Similarity=0.558 Sum_probs=38.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
+.++||||||+| +|++||+++++.|.+|+|||+.+..||.+.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 458899999999 999999999999999999999998888653
No 164
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=3.7e-08 Score=104.39 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=46.5
Q ss_pred ccchhHHHHHHHH-cCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+ .|++|+.++.|+++.. +++++++|.. .+|+ .+.|+.||+|||...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIV-ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4588888888876 5899999999999987 5677777654 3564 579999999998864
No 165
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.93 E-value=1.1e-08 Score=102.73 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=46.3
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCc--EEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~--~i~a~~VI~A~~~~~ 340 (540)
++.+.|.+.+++.|++|+++++|++++. +++.+..+.+.+|+ ++.||.||+|+|...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~-~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEF-EGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 6788899999999999999999999987 45556555555553 589999999999764
No 166
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.92 E-value=1.6e-08 Score=105.20 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=45.1
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcC--Cc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~--G~--~i~a~~VI~A~~~~~ 340 (540)
..+++.|.+.+. .|++|++++.|++|.. +++++.+|.+.+ |+ .+.|+.||+|||.+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 457778887775 5899999999999986 567787777643 32 588999999998865
No 167
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.92 E-value=1.4e-09 Score=110.81 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcC---CcEEEcCEEEEccCHHHHhhcCCCC
Q 009198 287 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GNVIDGDAYVFATPVDILKLQLPEN 348 (540)
Q Consensus 287 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~---G~~i~a~~VI~A~~~~~~~~ll~~~ 348 (540)
.|.+.+.+.|++|++++.|+++.. +++++++|++.+ ..+|.|+.||-|||-..+..+...+
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~~ 158 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGAP 158 (428)
T ss_dssp -----------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 344444667999999999999998 677888888765 3579999999999976666665443
No 168
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.91 E-value=2.1e-08 Score=105.67 Aligned_cols=58 Identities=21% Similarity=0.107 Sum_probs=46.7
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+. |++++.++.|+++.. +++++.+|.. .+|+ .+.|+.||+|||...
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 56888888888774 799999999999987 5678887753 4563 688999999998855
No 169
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.91 E-value=2e-08 Score=106.06 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=45.9
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..+...|.+.+.+. +++++.++.|+++.. +++++.+|.. .+|+ .+.|+.||+|||...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEE-eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 45777888877775 799999999999987 5677777643 4663 689999999998754
No 170
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.91 E-value=2.2e-08 Score=113.72 Aligned_cols=43 Identities=44% Similarity=0.645 Sum_probs=39.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
..++||||||+|.+|++||..+++.|.+|+||||.+..||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4678999999999999999999999999999999999988654
No 171
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.90 E-value=3.4e-08 Score=104.83 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=45.7
Q ss_pred ccchhHHHHHHHHcC-cEEEeCcceeEEEEccCCcEEEEE---EcCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~---~~~G~--~i~a~~VI~A~~~~~ 340 (540)
..+...|.+.+++.| ++|++++.|++|.. +++++++|. +.+|+ ++.|+.||+|||.+.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 467777888887776 99999999999986 456777764 23553 689999999999865
No 172
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.90 E-value=1.6e-08 Score=105.38 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=47.1
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcC-Cc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~-G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+. |++|+.++.|++|.. +++++++|.+.+ ++ ++.|+.||+|||...
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 56888999888875 899999999999986 567888877643 32 589999999998864
No 173
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.90 E-value=2.3e-08 Score=105.88 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=44.6
Q ss_pred ccchhHHHHHHHH----cCcEEEeCcceeEEEEccCCcEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~----~G~~i~~~t~V~~I~~~~~~~~~~V~~~---~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+ .|++|+++++|++|..++++++++|... +|+ .+.|+.||+|||.+.
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3566666665544 3799999999999987556788888764 453 578999999998853
No 174
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.89 E-value=3.2e-08 Score=101.44 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=48.7
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEcc-CCcEEEEEEcCC-cEEEcCEEEEccCHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTNG-NVIDGDAYVFATPVD 339 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~-~~~~~~V~~~~G-~~i~a~~VI~A~~~~ 339 (540)
...+++.|.+.+++.|++|+++++|++|..++ ++++++|.+.++ .++.|+.||+|+|.+
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 35789999999999999999999999998743 577777776433 579999999999853
No 175
>PRK08275 putative oxidoreductase; Provisional
Probab=98.89 E-value=5.2e-08 Score=102.72 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=48.2
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..+...|.+.+.+.|++|++++.|++|..++++++.+|.. .+|+ .+.|+.||+|||...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3678889999988999999999999998743677888764 3564 478999999998864
No 176
>PRK07236 hypothetical protein; Provisional
Probab=98.86 E-value=3.2e-08 Score=100.05 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCc
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 132 (540)
...||+|||||++||++|..|++.|++|+|+|+++.... . .|.-. ...++..++++++|+..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~----------~g~gi--~l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD---G----------RGAGI--VLQPELLRALAEAGVAL 66 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC---C----------CCcee--EeCHHHHHHHHHcCCCc
Confidence 357999999999999999999999999999999864210 0 11100 11346778889998864
No 177
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.85 E-value=5.2e-08 Score=95.37 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=44.1
Q ss_pred cchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+...+.+.++++ +++|. ++.|++|.. +++++.+|.+.+|+.+.++.||+|||.+.
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 4555566666664 57774 789999988 77899999999999999999999999954
No 178
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.84 E-value=5e-08 Score=102.34 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=45.9
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEcc-----CCcEEEEEEc---CCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~-----~~~~~~V~~~---~G~--~i~a~~VI~A~~~~~ 340 (540)
..+...|.+.+.+. |++|++++.|+++..++ ++++++|... +|+ .|.|+.||+|||...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 45777888888765 89999999999998633 3778888753 453 589999999998865
No 179
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.84 E-value=3.9e-08 Score=85.32 Aligned_cols=50 Identities=30% Similarity=0.426 Sum_probs=36.2
Q ss_pred hHHHHHHHHcCcEEE-eCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCH
Q 009198 286 LPIVEHIQSLGGEVR-LNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 338 (540)
Q Consensus 286 ~~l~~~l~~~G~~i~-~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~ 338 (540)
+.+.+.+ ..|++|. .+.+|++|...+++. .|.+.+|..+.||+||+|||.
T Consensus 105 ~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 105 DRLLARL-PAGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHhh-cCCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 3444444 4454443 467999999855553 588899999999999999984
No 180
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.84 E-value=1e-06 Score=85.63 Aligned_cols=59 Identities=36% Similarity=0.511 Sum_probs=52.0
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..++++.+.+.+++.|++|+++|.|..|+. +++.+.+|.+.+|+++.+|+||+|.|-..
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcch
Confidence 457899999999999999999999999998 56556789999999999999999997643
No 181
>PRK06753 hypothetical protein; Provisional
Probab=98.84 E-value=9.7e-09 Score=103.42 Aligned_cols=36 Identities=33% Similarity=0.666 Sum_probs=33.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~g 93 (540)
+||+|||||++|+++|..|++.|++|+|+|+++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 489999999999999999999999999999987653
No 182
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.83 E-value=3e-08 Score=102.67 Aligned_cols=60 Identities=25% Similarity=0.320 Sum_probs=47.5
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ 343 (540)
..+...+.+.++++|++++++++|++|+..++ .+ .+++.+|+++.+|.||+|+|......
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCcccc
Confidence 35667888889999999999999999986333 33 46677888899999999998865443
No 183
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.82 E-value=1e-07 Score=91.60 Aligned_cols=38 Identities=42% Similarity=0.579 Sum_probs=34.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCc
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG 94 (540)
+.+|||||||++||++|..|.+.|++|+|+|++..+-|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 45899999999999999999999999999999766544
No 184
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.82 E-value=3.5e-08 Score=96.99 Aligned_cols=72 Identities=19% Similarity=0.162 Sum_probs=54.6
Q ss_pred cCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcC---Cc--EEEcCEEEEccCHHH
Q 009198 269 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 269 ~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~---G~--~i~a~~VI~A~~~~~ 340 (540)
.|+.++|-...+-.++...++=.+..+|..+..+.+|.++.+++++++.++...| |+ +|+|+.||.|||+.+
T Consensus 211 ~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 211 KGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred eeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence 3444444333334678888888888899999999999999987888887777654 33 589999999999865
No 185
>PRK06116 glutathione reductase; Validated
Probab=98.82 E-value=5.1e-09 Score=107.99 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=46.6
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+...+.+.++++|+++++++.|++|+.++++.+ .|.+.+|+++.+|.||+|+|...
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCc
Confidence 4667788888999999999999999987444433 47778888899999999998754
No 186
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.82 E-value=1.8e-08 Score=94.45 Aligned_cols=254 Identities=18% Similarity=0.243 Sum_probs=127.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC----CCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~----g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 131 (540)
..+.+-|||+|++||++|..|.+. |.+|.|+|.-+..||............+-.|++-+-..+..++++++.+.--
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemEnhfEc~WDlfrsIPSL 100 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREMENHFECLWDLFRSIPSL 100 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHHHHHHHHHHHHhcCccc
Confidence 456789999999999999999986 5699999999999998765443333444456666655666788888775421
Q ss_pred cccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchhhhHhcCcccccccCCCCHHH
Q 009198 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (540)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 211 (540)
+....+-.+.++-+........+....+.- -..+... ....+..+.+ +.+...+.. --+.+++.++.+
T Consensus 101 ei~naSvldEfy~~d~~dPn~s~cRli~k~------g~rv~dd-g~~tl~~~~~--~ei~kL~~t---~EE~L~~~tI~d 168 (587)
T COG4716 101 EIPNASVLDEFYWLDKDDPNSSNCRLIHKR------GRRVDDD-GSFTLNNKAR--KEIIKLLMT---PEEKLDDLTIED 168 (587)
T ss_pred cCCCcHHHHHHHhccCCCCCccceeeeecc------ccccccc-cccccChhhH--HHHHHHHcC---cHHhcCCccHHH
Confidence 111111111111110000000000000000 0000000 0011110100 011111110 013456788888
Q ss_pred HHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccC----cceeeecCCCCccchhH
Q 009198 212 WMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLP 287 (540)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g----~~~~~~~gg~~~~l~~~ 287 (540)
|+.+. +.+..|..+.+.++++..- -|+......+.+++....| +.+.+..-++...++..
T Consensus 169 ~Fse~---------------FF~sNFW~yW~tmFAFekW-hSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlP 232 (587)
T COG4716 169 WFSED---------------FFKSNFWYYWQTMFAFEKW-HSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLP 232 (587)
T ss_pred hhhHh---------------hhhhhHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHH
Confidence 88776 2222233333333333321 1222222333333322212 22334444446789999
Q ss_pred HHHHHHHcCcEEEeCcceeEEEEcc-CCcEE--EE-EEcCCcEEE--c-CEEEEccC
Q 009198 288 IVEHIQSLGGEVRLNSRVQKIELND-DGTVK--NF-LLTNGNVID--G-DAYVFATP 337 (540)
Q Consensus 288 l~~~l~~~G~~i~~~t~V~~I~~~~-~~~~~--~V-~~~~G~~i~--a-~~VI~A~~ 337 (540)
|...|+++||+|..++.|+.|..+. .|+.+ .+ +..+++++. - |-|+++-|
T Consensus 233 li~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNg 289 (587)
T COG4716 233 LITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNG 289 (587)
T ss_pred HHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEecc
Confidence 9999999999999999999998632 23211 12 245665543 2 45555443
No 187
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.81 E-value=3.7e-08 Score=90.64 Aligned_cols=39 Identities=38% Similarity=0.624 Sum_probs=36.1
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
-|||||+|.+||+|+..+...|-.|+++|++..+||..-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999999888999999999999653
No 188
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.80 E-value=2.6e-07 Score=103.69 Aligned_cols=43 Identities=33% Similarity=0.520 Sum_probs=40.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
..+||+|||||++||+||..|++.|++|+|+|+.+.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4679999999999999999999999999999999999998754
No 189
>PRK05868 hypothetical protein; Validated
Probab=98.79 E-value=1.4e-07 Score=94.52 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=39.0
Q ss_pred HcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH-HhhcC
Q 009198 294 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 345 (540)
Q Consensus 294 ~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~-~~~ll 345 (540)
..|++++++++|++|+. +++. +.|++.+|+++.||.||-|-|.+. +++.+
T Consensus 116 ~~~v~i~~~~~v~~i~~-~~~~-v~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQD-DGDS-VRVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEe-cCCe-EEEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 45799999999999986 3433 358889998999999999998743 34444
No 190
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.79 E-value=5e-08 Score=94.83 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=42.8
Q ss_pred hhHHHHHHHHc-CcEEEeCcceeEEEEc-cCCcEEEEEEcC--Cc----EEEcCEEEEccCHHHHhhcC
Q 009198 285 CLPIVEHIQSL-GGEVRLNSRVQKIELN-DDGTVKNFLLTN--GN----VIDGDAYVFATPVDILKLQL 345 (540)
Q Consensus 285 ~~~l~~~l~~~-G~~i~~~t~V~~I~~~-~~~~~~~V~~~~--G~----~i~a~~VI~A~~~~~~~~ll 345 (540)
...++..+.++ +++|++++.|++|..+ +++++++|.+.+ +. .+.++.||+|+|+--..+||
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 34444455555 8999999999999763 467788887643 33 46789999999985556664
No 191
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.77 E-value=5.9e-08 Score=94.56 Aligned_cols=37 Identities=46% Similarity=0.711 Sum_probs=33.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~ 95 (540)
+||+|||||++|+++|..|++.|++|+|+|+.+ .||.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~ 37 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQ 37 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcc
Confidence 599999999999999999999999999999876 5553
No 192
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.76 E-value=1.9e-08 Score=102.62 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.|.+.|.+.+. ...++++++|++|+..+++ +.|++.+|+++.||.||.|.|.+.
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 45556665553 3568899999999874443 358888998899999999999865
No 193
>PRK12831 putative oxidoreductase; Provisional
Probab=98.76 E-value=4.9e-07 Score=93.05 Aligned_cols=44 Identities=36% Similarity=0.454 Sum_probs=40.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
....+||+|||||++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 35678999999999999999999999999999999999998764
No 194
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.75 E-value=1.6e-08 Score=103.86 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=47.1
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC-cEEEcCEEEEccCHHHHhh
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G-~~i~a~~VI~A~~~~~~~~ 343 (540)
..+...+.+.++++|+++++++.|++|..++++. ..|++.+| +++.+|.||+|+|......
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 3466778888889999999999999998633332 34677777 5799999999998865443
No 195
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.75 E-value=3.8e-08 Score=96.32 Aligned_cols=62 Identities=26% Similarity=0.281 Sum_probs=50.8
Q ss_pred CccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEc---CC--cEEEcCEEEEccCHHHHhh
Q 009198 281 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~---~G--~~i~a~~VI~A~~~~~~~~ 343 (540)
+..|.+.|.+.+.++ |++++++++|++|++.+++.+ .|++. .| .++.|+.|++..|.+++.-
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L 247 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGALPL 247 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhHHH
Confidence 678999999999998 999999999999999777743 35442 22 4799999999999988543
No 196
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.75 E-value=6.1e-08 Score=100.44 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=45.0
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC--cEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G--~~i~a~~VI~A~~~~~ 340 (540)
..+...+.+.+++.|+++++++.|++|+. +++.+ .+.+.+| +++.+|.||+|+|...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~-~~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEK-NDDQV-VYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEE-eCCEE-EEEEeCCcEEEEEeCEEEEecCCcc
Confidence 35667788888899999999999999986 34444 3666667 4799999999998765
No 197
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.74 E-value=5.1e-07 Score=92.76 Aligned_cols=43 Identities=44% Similarity=0.566 Sum_probs=39.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
...++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 4568999999999999999999999999999999998888653
No 198
>PTZ00367 squalene epoxidase; Provisional
Probab=98.74 E-value=3.3e-06 Score=88.42 Aligned_cols=65 Identities=29% Similarity=0.309 Sum_probs=47.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcc
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 133 (540)
...++||+|||||++|+++|+.|++.|++|+|+|+..... ..+ . .|. ...++-.+.++++|+.+.
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~--~~r---~------~G~----~L~p~g~~~L~~LGL~d~ 94 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSK--PDR---I------VGE----LLQPGGVNALKELGMEEC 94 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccc--cch---h------hhh----hcCHHHHHHHHHCCChhh
Confidence 3467899999999999999999999999999999975200 000 0 111 123456778899998653
No 199
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.73 E-value=2.4e-07 Score=85.86 Aligned_cols=62 Identities=24% Similarity=0.267 Sum_probs=52.2
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCc--EEEcCEEEEccCHHHHhhcC
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDILKLQL 345 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~--~i~a~~VI~A~~~~~~~~ll 345 (540)
++-+.|...+++.|+.+..+-+|.+... .+++++.|.|.++. .++|+.+|+|+|...-..|.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLv 322 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLV 322 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccch
Confidence 6778888889999999999999999998 67788889988774 47899999999987744444
No 200
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.72 E-value=3.8e-07 Score=96.18 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=43.9
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccC--CcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~--~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
.+...+...+.+.+++|+.++.|+++..+++ |++++|.. .+|+ ++.|+.||+|||.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4445556666666789999999999997432 68888864 3554 578999999999875
No 201
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.71 E-value=2.9e-06 Score=89.08 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=51.9
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc---CC--cEEEcCEEEEccCHHHHhhc
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILKLQ 344 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~---~G--~~i~a~~VI~A~~~~~~~~l 344 (540)
|.+++..+++.+.++|++|+++++|++|.. +++.+++|++. +| .+|.|++||+|+|+|+ ..+
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa-~~l 193 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA-GRI 193 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch-HHH
Confidence 789999999999999999999999999987 56666667653 34 2699999999999987 444
No 202
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.71 E-value=1.2e-07 Score=97.61 Aligned_cols=41 Identities=27% Similarity=0.457 Sum_probs=36.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
++||+|||||++|++||..+++.|++|+|+|+. .+||.+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeec
Confidence 589999999999999999999999999999984 67876543
No 203
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.70 E-value=9.7e-08 Score=98.49 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHc-CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009198 282 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 282 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ 343 (540)
..+...+.+.+++. |+.++ ...|+++..++++.+.+|.+.+|..+.|+.||+|+|.+.-..
T Consensus 96 ~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ 157 (617)
T TIGR00136 96 VLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRGK 157 (617)
T ss_pred HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCCC
Confidence 45666677777777 57775 557888876446788899999998899999999999996333
No 204
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.70 E-value=1.3e-06 Score=80.51 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=47.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC--CCceEEEecCCCCCcceeeeccCCCCeeeccceeecc
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG 116 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~--g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~ 116 (540)
...++|+||||||+.|++.|.+|.-+ +.+|.|+|++..++-..++ .+..++..|.-+.++
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg---hNSgViHaGIYY~P~ 106 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG---HNSGVIHAGIYYKPG 106 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc---cccceeeeeeeeCCc
Confidence 35789999999999999999999877 8899999999887755544 445566666555443
No 205
>PRK09897 hypothetical protein; Provisional
Probab=98.70 E-value=1.3e-07 Score=97.75 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=39.9
Q ss_pred cchhHHHHHHHHcC--cEEEeCcceeEEEEccCCcEEEEEEcC-CcEEEcCEEEEccCHH
Q 009198 283 RLCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPVD 339 (540)
Q Consensus 283 ~l~~~l~~~l~~~G--~~i~~~t~V~~I~~~~~~~~~~V~~~~-G~~i~a~~VI~A~~~~ 339 (540)
...+.+.+.+.+.| ++++.+++|++|+..++ .+ .|++.+ |+++.||+||+|+|..
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~-g~-~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNA-GV-MLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCC-EE-EEEECCCCeEEEcCEEEECCCCC
Confidence 34445666666777 78888999999987443 33 477655 4679999999999863
No 206
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.70 E-value=1.4e-06 Score=85.76 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=44.6
Q ss_pred ccchhHHHHHHHH-cCcEEEeCcceeEEEEccCCcEEEEEEcCC----cEEEcCEEEEccCH
Q 009198 282 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPV 338 (540)
Q Consensus 282 ~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G----~~i~a~~VI~A~~~ 338 (540)
..+++.|.+.+.+ .+++|+.++.+.+|..+++..+.+|.+.+. .++.|+.||+|||.
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 5788889998887 489999999999998844424557777433 46889999999976
No 207
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.69 E-value=3.8e-07 Score=98.19 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=40.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
+...+|+|||||++||++|+.|++.|++|+|+|+.+.+||.+..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 35679999999999999999999999999999999999997653
No 208
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.69 E-value=4.2e-08 Score=93.31 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=49.1
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc---------------CCcEEEcCEEEEccCH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---------------NGNVIDGDAYVFATPV 338 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~---------------~G~~i~a~~VI~A~~~ 338 (540)
...++..|-+.+++.|++|+-+-.+.+|..+++|.+.+|.|. +|-.+.|+.-|+|-|.
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 468899999999999999999999999998889999888774 3336789999998765
No 209
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.69 E-value=2.9e-07 Score=93.82 Aligned_cols=45 Identities=36% Similarity=0.472 Sum_probs=40.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCc-eEEEecCCCCCcceee
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDVLGGKIAA 98 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~-v~v~E~~~~~gG~~~~ 98 (540)
....+||+|||||++|+++|++|.+.|.. ++||||++.+||.-..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh
Confidence 45788999999999999999999999998 9999999999986544
No 210
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.68 E-value=1e-07 Score=99.71 Aligned_cols=54 Identities=28% Similarity=0.361 Sum_probs=41.3
Q ss_pred hhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 285 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 285 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
...+.+.+.+.|++++++++|++|... ++. ..|++.+|+++.+|+||+|+|...
T Consensus 270 ~~~l~~~l~~~gv~i~~~~~V~~I~~~-~~~-~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 270 AANLEEHIKQYPIDLMENQRAKKIETE-DGL-IVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHhCCeEEcCCEEEEEEec-CCe-EEEEECCCCEEEeCEEEECCCCCc
Confidence 344555566678999999999999863 332 357778888899999999999863
No 211
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.68 E-value=2.1e-07 Score=95.62 Aligned_cols=40 Identities=35% Similarity=0.520 Sum_probs=36.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC-CCcce
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV-LGGKI 96 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~-~gG~~ 96 (540)
++||+|||||++|++||..|++.|++|+|+|+++. +||.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c 43 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC 43 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence 58999999999999999999999999999999864 68754
No 212
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.67 E-value=2.1e-07 Score=96.24 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=38.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
++||+|||||++|++||..+++.|++|+|+|++..+||.+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 489999999999999999999999999999987788887633
No 213
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.67 E-value=1.2e-07 Score=99.36 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=42.4
Q ss_pred chhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 284 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 284 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
+...+.+.+++.|++++++++|++|...+ +. ..|.+.+|+++.++.||+|+|...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~~-~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAA-GL-IEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC-Ce-EEEEECCCCEEEcCEEEECCCCCc
Confidence 34445566677789999999999998733 33 357788888899999999999854
No 214
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.65 E-value=1.3e-06 Score=97.49 Aligned_cols=44 Identities=39% Similarity=0.465 Sum_probs=39.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
+...+|+|||||++||+||+.|++.|++|+|+|+.+.+||.+..
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 34679999999999999999999999999999999999987643
No 215
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.63 E-value=1.7e-06 Score=86.39 Aligned_cols=36 Identities=36% Similarity=0.509 Sum_probs=33.5
Q ss_pred eEEEECCChHHHHHHHHHHHC--CCceEEEecCCCCCc
Q 009198 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGG 94 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~--g~~v~v~E~~~~~gG 94 (540)
||+|||||++|+++|+.|++. |++|+|+|+.+.++|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 899999999999999999987 999999999887665
No 216
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.63 E-value=4.3e-07 Score=91.70 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=53.4
Q ss_pred ccCcceeeecCCC------CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCc--EEEcCEEEEccCHH
Q 009198 268 KHGSKMAFLDGNP------PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVD 339 (540)
Q Consensus 268 ~~g~~~~~~~gg~------~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~--~i~a~~VI~A~~~~ 339 (540)
..|+.......+. -..+.+.+.+.+++.|++|+++++|++++..+++ +.+++.+|+ ++.+|.|++|+|-.
T Consensus 194 ~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 194 ALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred HcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCc
Confidence 3566555544321 2467888888888888999999999999874444 457888875 68999999999875
Q ss_pred H
Q 009198 340 I 340 (540)
Q Consensus 340 ~ 340 (540)
.
T Consensus 272 P 272 (454)
T COG1249 272 P 272 (454)
T ss_pred c
Confidence 4
No 217
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.62 E-value=2.6e-06 Score=88.01 Aligned_cols=43 Identities=42% Similarity=0.568 Sum_probs=39.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
...++|+|||||++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4567999999999999999999999999999999999988653
No 218
>PRK06370 mercuric reductase; Validated
Probab=98.62 E-value=1.6e-07 Score=97.28 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=42.3
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc-CCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~-~G~~i~a~~VI~A~~~~~ 340 (540)
.+...+.+.+.+.|++|++++.|++|+..+++..+.+... +++++.+|.||+|+|...
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCc
Confidence 4566788888889999999999999986333322223222 345799999999998754
No 219
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=3.6e-07 Score=94.66 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=37.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
..+|++|||||++|++||..|++.|++|+|+|+.. +||.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 46899999999999999999999999999999977 777553
No 220
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.60 E-value=4.8e-07 Score=93.69 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc--CC--cEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~--~G--~~i~a~~VI~A~~~~~ 340 (540)
.+...+.+.++++|++|++++.|++|.. +++.+ .+++. +| +++.+|.||+|+|...
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~-~~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDD-NGSKV-TVTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEE-eCCeE-EEEEEecCCCeEEEEeCEEEECcCccc
Confidence 4667788888999999999999999986 33333 34443 56 3699999999998754
No 221
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.58 E-value=3.2e-06 Score=87.57 Aligned_cols=43 Identities=42% Similarity=0.622 Sum_probs=39.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
+..++|+|||||++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 4567999999999999999999999999999999999998654
No 222
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.58 E-value=3.6e-07 Score=94.80 Aligned_cols=33 Identities=39% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEec
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~ 88 (540)
.++|++|||||++|++||..|++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 468999999999999999999999999999998
No 223
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.57 E-value=5.3e-07 Score=93.57 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=37.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
..+||+|||||++|++||..|++.|++|+|+|+. .+||.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4789999999999999999999999999999986 66776543
No 224
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=3.3e-07 Score=92.13 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=40.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
...+|+|||||+|||++|.+|.+.|++|+++||.+.+||....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 4679999999999999999999999999999999999997655
No 225
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.56 E-value=2.3e-06 Score=93.71 Aligned_cols=43 Identities=37% Similarity=0.471 Sum_probs=39.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
...++|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4567999999999999999999999999999999988888764
No 226
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.56 E-value=4.2e-06 Score=86.54 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=35.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG 94 (540)
+||+|||+|++|+.+|+.|++.|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988886
No 227
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.55 E-value=1.9e-06 Score=95.99 Aligned_cols=37 Identities=35% Similarity=0.429 Sum_probs=34.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
..++||+|||||.+||+||..+++.|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3568999999999999999999999999999999875
No 228
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.6e-07 Score=86.32 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhHH
Q 009198 482 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 525 (540)
Q Consensus 482 ~~~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~~~ 525 (540)
.+|+++++|-|||-....+. -+..|.-.|..||..+...+...
T Consensus 261 ~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 261 METSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred cccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhhc
Confidence 67889999999999877543 67888889999999888887653
No 229
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.54 E-value=1.9e-06 Score=84.94 Aligned_cols=54 Identities=31% Similarity=0.453 Sum_probs=46.2
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCc-EEEcCEEEEccCHHH
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-VIDGDAYVFATPVDI 340 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~-~i~a~~VI~A~~~~~ 340 (540)
+.++.....+.|+++|++|+++++|++|+. ++ |++.+|+ +|.++.||.|+|...
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCCcC
Confidence 467888888899999999999999999974 33 7788887 499999999998865
No 230
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.54 E-value=2.2e-06 Score=88.67 Aligned_cols=42 Identities=38% Similarity=0.448 Sum_probs=38.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
.++||+|||||++|+.+|..|++.|++|+|+|+.+.+||.+-
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 468999999999999999999999999999999877888553
No 231
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.53 E-value=8.3e-06 Score=84.16 Aligned_cols=43 Identities=33% Similarity=0.545 Sum_probs=39.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
+...+|+|||||++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999764
No 232
>PRK10262 thioredoxin reductase; Provisional
Probab=98.53 E-value=5.1e-07 Score=88.78 Aligned_cols=43 Identities=35% Similarity=0.587 Sum_probs=37.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
...+||+|||||++||+||..|+++|++|+++|+. ..||....
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 46789999999999999999999999999999965 56776543
No 233
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.52 E-value=4.6e-07 Score=95.53 Aligned_cols=40 Identities=35% Similarity=0.583 Sum_probs=35.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcce
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~ 96 (540)
..+||+|||||++||+||..|++.|++|+|+|++ ..||.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~ 42 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQI 42 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceE
Confidence 4589999999999999999999999999999985 556643
No 234
>PTZ00058 glutathione reductase; Provisional
Probab=98.52 E-value=1e-06 Score=92.17 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=37.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
..++|++|||||++|.+||..+++.|.+|+|+|++ .+||.+-.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 46789999999999999999999999999999986 56775543
No 235
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.50 E-value=6.9e-07 Score=94.10 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
....+|+|||||++||++|..|++.|++|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 466899999999999999999999999999999975
No 236
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.6e-06 Score=81.36 Aligned_cols=254 Identities=15% Similarity=0.107 Sum_probs=132.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeecc------CC--------------CCeeeccceeec
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD------GD--------------GDWYETGLHIFF 115 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~------~~--------------g~~~d~G~~~~~ 115 (540)
+.+||+|+|-|+.-...+..|+..|.+|+.+|+++.-||-.++... .+ .+-+|+-+-++.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lm 82 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLM 82 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhh
Confidence 4599999999999999999999999999999999999998877430 00 111222222222
Q ss_pred cCcccHHHHHHhcCCCcccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhchh--hh
Q 009198 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PA 193 (540)
Q Consensus 116 ~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 193 (540)
.. ..+..++-+-++...+.+......+.+.. +++..+... - .. .+ ....+...++.+..+-+. ..
T Consensus 83 An-~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~--~k~~KVP~t------~--~E-a~-~s~lmgl~eKrr~~kFl~~V~n 149 (440)
T KOG1439|consen 83 AN-GELVKILIHTGVTRYLEFKSISGSFVYKK--GKIYKVPAT------E--AE-AL-TSPLMGLFEKRRVMKFLKFVLN 149 (440)
T ss_pred cc-chHHHHHHHhchhhheEEEeecceEEEEC--CeEEECCCC------H--HH-Hh-cCCccchhHHHHHHHHHHHHhh
Confidence 22 23444555556655554444333332221 122211111 0 00 11 123334444433332221 11
Q ss_pred -HhcCcccccccC--CCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHh---hh
Q 009198 194 -IIGGQAYVEAQD--GLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL---QE 267 (540)
Q Consensus 194 -~~~~~~~~~~~~--~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~ 267 (540)
......-+...+ ..++.+++.+. +......+..-..+..... -+.-+.+.......+..++ ..
T Consensus 150 ~~e~~~~~~~~~~~~k~tm~~~~~~~----------~l~~~~~~f~gh~~al~~d-d~~ld~p~~~~~~ri~~Y~~S~~~ 218 (440)
T KOG1439|consen 150 YDEEDPKTWQGYDLSKDTMREFLGKF----------GLLEGTIDFIGHAIALLCD-DSYLDQPAKETLERILLYVRSFAR 218 (440)
T ss_pred hhhhccccccccccccchHHHHHHHh----------cccccceeeeeeeeEEEec-chhccCccHHHHHHHHHHHHHHhh
Confidence 111111112222 23677777776 3322211111000000000 0011222222222222222 11
Q ss_pred ccCcceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEc
Q 009198 268 KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 335 (540)
Q Consensus 268 ~~g~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A 335 (540)
...+...||..| ...+.+++++...-.|+++.+|.++.+|...+++++.+|...++ ..+++.||+-
T Consensus 219 yg~~~ylyP~yG-lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k~vi~d 284 (440)
T KOG1439|consen 219 YGKSPYLYPLYG-LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCKKVICD 284 (440)
T ss_pred cCCCcceecccC-cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecceEEec
Confidence 222346678777 78999999999888899999999999999866788877765444 5677766653
No 237
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.47 E-value=6.2e-06 Score=88.56 Aligned_cols=43 Identities=35% Similarity=0.534 Sum_probs=39.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
+...+|+|||||++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 3578999999999999999999999999999999999998764
No 238
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.44 E-value=3.5e-06 Score=88.79 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=42.1
Q ss_pred hhHHHHHHH-HcCcEEEeCcceeEEEEccCCcEEEEEEcCC-c---EEEcCEEEEccCHHHHhhc
Q 009198 285 CLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYVFATPVDILKLQ 344 (540)
Q Consensus 285 ~~~l~~~l~-~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G-~---~i~a~~VI~A~~~~~~~~l 344 (540)
...++..+. +.+++|++++.|++|.. +++++++|.+.++ + .+.++.||+|+|+.-..+|
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~L 259 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQL 259 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHH
Confidence 344444444 44699999999999998 5678889887543 2 2578999999998333444
No 239
>PLN02507 glutathione reductase
Probab=98.43 E-value=1.3e-06 Score=90.87 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=32.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEec
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~ 88 (540)
..++|++|||||++|+.+|..+++.|.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4578999999999999999999999999999996
No 240
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.43 E-value=5.1e-06 Score=77.23 Aligned_cols=40 Identities=48% Similarity=0.756 Sum_probs=35.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC--CCcc
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV--LGGK 95 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~--~gG~ 95 (540)
..+||+|||+|.+||.+|.+|+.+|++|+|+|++.. +||.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 468999999999999999999999999999998753 5554
No 241
>PRK02106 choline dehydrogenase; Validated
Probab=98.43 E-value=2e-06 Score=91.17 Aligned_cols=37 Identities=35% Similarity=0.408 Sum_probs=33.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHH-CCCceEEEecCCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDV 91 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~-~g~~v~v~E~~~~ 91 (540)
...+|+||||||.+|+.+|.+|++ .|++|+|||+.+.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 356899999999999999999999 7999999999854
No 242
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.39 E-value=4.4e-06 Score=79.18 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=40.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
.++|++|||+|+.|-.||.+.++.|.+.+.+|++..+||.+-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 6899999999999999999999999999999999999997765
No 243
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.37 E-value=6.7e-06 Score=78.00 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
.+..+||+|||||++|.+.|+.|+|.|.+|+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 457789999999999999999999999999999996
No 244
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.36 E-value=4.6e-06 Score=86.81 Aligned_cols=44 Identities=36% Similarity=0.396 Sum_probs=39.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
..++||+|||||.+||.||..+++.|.+|+|+||....+|.+..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 46789999999999999999999999999999999888876644
No 245
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.35 E-value=3.6e-05 Score=81.67 Aligned_cols=43 Identities=37% Similarity=0.522 Sum_probs=39.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
....+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4567999999999999999999999999999999999998664
No 246
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.33 E-value=3.4e-06 Score=87.30 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=35.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
.|++|||||.+|+.+|..|++.|.+|+|+|++. .||.+-.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~ 41 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVL 41 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccc
Confidence 589999999999999999999999999999875 6765543
No 247
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=8e-05 Score=70.56 Aligned_cols=250 Identities=16% Similarity=0.201 Sum_probs=129.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeecc---------C------CC----Ceeeccceeecc
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD---------G------DG----DWYETGLHIFFG 116 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~---------~------~g----~~~d~G~~~~~~ 116 (540)
..+||+|+|.|+.-...+..|+.+|.+|+++|+++.-|+..++... . .+ .-+|.-+.++..
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A 84 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFA 84 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcc
Confidence 4799999999999999999999999999999999999987776330 0 01 112222222222
Q ss_pred CcccHHHHHHhcCCCcccccccccceeecCCCCCCcccccCCCCCCCchhHHHHhhhcCCCCChhHHHHhhhch--hhhH
Q 009198 117 AYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL--LPAI 194 (540)
Q Consensus 117 ~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 194 (540)
...+..++.+.++...+.+......+.... +++..+... -. . ......+...++....+-+ ....
T Consensus 85 -~s~l~~iLi~t~v~~YLefk~i~~~~~~~~--~k~~kVP~n------e~---e-i~~s~~lsL~eKr~vmrFl~~V~n~ 151 (434)
T COG5044 85 -NSELLKILIETGVTEYLEFKQISGSFLYRP--GKIYKVPYN------EA---E-IFTSPLLSLFEKRRVMRFLKWVSNY 151 (434)
T ss_pred -cchHHHHHHHhChHhheeeeeccccEEecC--CcEEECCcc------HH---h-hhcCCCcchhhHHHHHHHHHHHHhH
Confidence 223555666667666555444333332221 122211111 00 0 1112233333333332211 1111
Q ss_pred hcCccccccc-CCCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhh--ccC-
Q 009198 195 IGGQAYVEAQ-DGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE--KHG- 270 (540)
Q Consensus 195 ~~~~~~~~~~-~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~g- 270 (540)
......+..+ ...+.-+++.+. ++......+.+...+...+ + -+.+.......+..++.. .+|
T Consensus 152 ~~~~~~~~~~~e~k~~~~~~~ek---------f~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~~yg~ 218 (434)
T COG5044 152 AEQKSTLQELYESKDTMEFLFEK---------FGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFGDYGK 218 (434)
T ss_pred HhhhhhchhhhhcccHHHHHHHH---------HccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhcccCC
Confidence 1100101111 112222333222 2444333222222222211 2 122333333333333321 233
Q ss_pred cceeeecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEc
Q 009198 271 SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 335 (540)
Q Consensus 271 ~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A 335 (540)
+...|+..| +..+++++++...-.|+.+.+|+++.+|..... +.+|.. ++.+..|.+||..
T Consensus 219 ~pyLyp~YG-l~El~QGFaRssav~GgtymLn~~i~ein~tk~--v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 219 SPYLYPRYG-LGELSQGFARSSAVYGGTYMLNQAIDEINETKD--VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred CcceeeccC-chhhhHHHHHhhhccCceeecCcchhhhccccc--eeeeec-CcceeecCcccCC
Confidence 446678877 799999999999889999999999999975322 334443 3347888888864
No 248
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.18 E-value=4.2e-05 Score=84.11 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=48.1
Q ss_pred chhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhc
Q 009198 284 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 344 (540)
Q Consensus 284 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~l 344 (540)
....+.+.++++|++|++++.|++|..++.+....|++.+|+++.+|.||+|+|......|
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L 249 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKL 249 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchH
Confidence 4556788888999999999999999753334455688889989999999999987553333
No 249
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.17 E-value=1.6e-05 Score=78.67 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=33.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCC---CceEEEecCCCCCcce
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAG---HKPLLLEARDVLGGKI 96 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g---~~v~v~E~~~~~gG~~ 96 (540)
.++|+|||+|.+|+.+|.+|.+.- ..|.|+|.+...|+-+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 368999999999999999999862 2399999998877644
No 250
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.16 E-value=2.6e-05 Score=80.45 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=44.2
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.+.+.+++.|++++++++|++|.. ++.+..+.+.++ ++.+|.||+|+|...
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~d~vi~a~G~~p 246 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-EYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence 45667788888899999999999999964 344555666655 799999999999754
No 251
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.15 E-value=7.7e-05 Score=68.65 Aligned_cols=185 Identities=14% Similarity=0.074 Sum_probs=97.2
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCCchhhHHHHHHhcc
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKL 361 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~ 361 (540)
.++..-|.+.+.++|+++. ..+|++++. | .+ -.+|.||.|+|.+. ..|..+...
T Consensus 151 ~~ylpyl~k~l~e~Gvef~-~r~v~~l~E--------~--~~---~~~DVivNCtGL~a-~~L~gDd~~----------- 204 (342)
T KOG3923|consen 151 PKYLPYLKKRLTENGVEFV-QRRVESLEE--------V--AR---PEYDVIVNCTGLGA-GKLAGDDDL----------- 204 (342)
T ss_pred hhhhHHHHHHHHhcCcEEE-EeeeccHHH--------h--cc---CCCcEEEECCcccc-ccccCCcce-----------
Confidence 5788889999999999984 556777652 1 11 24899999999998 777766431
Q ss_pred CCcCeEEEEEEeccccccccCcceeecCCceeEEeccCcccccccCCCccEEEEEeeccccccCCChHHHHHHHHHHHHH
Q 009198 362 VGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAK 441 (540)
Q Consensus 362 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~~~l~~ 441 (540)
-++-...+.++.+|-..+ ++. |.+.+ --.|...++++...---+.|......+-...+++....
T Consensus 205 --yPiRGqVl~V~ApWvkhf---~~~---------D~~~t--y~iP~~~~V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~a 268 (342)
T KOG3923|consen 205 --YPIRGQVLKVDAPWVKHF---IYR---------DFSRT--YIIPGTESVTLGGTKQEGNWNLEITDEDRRDILERCCA 268 (342)
T ss_pred --eeccceEEEeeCCceeEE---EEe---------cCCcc--EEecCCceEEEccccccCcccCcCChhhHHHHHHHHHH
Confidence 122233455666653221 111 11110 01233344443322112567543333334445555566
Q ss_pred hCCCccccccccceEEEEEEecCCCceeccCCCCCCCCCC--CCCC-CCCeEEecccccCCCCCchHHHHHHHHHHHHHH
Q 009198 442 LFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL--QRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 518 (540)
Q Consensus 442 ~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~-~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v 518 (540)
..|....+ +++.- | .+..|+....+.+ .++. -+++-.+.++-+.+ .|+.-+.-+|..||+.+
T Consensus 269 L~P~l~~a-----~ii~E-~-------vGlRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG--~G~Tl~wGtAlea~~Lv 333 (342)
T KOG3923|consen 269 LEPSLRHA-----EIIRE-W-------VGLRPGRKQVRLEAELRTRGGKRLTVVHNYGHGG--NGFTLGWGTALEAAKLV 333 (342)
T ss_pred hCcccccc-----eehhh-h-------hcccCCCCceeeeeeeecCCCccceeEeeccCCC--CceecccchHHHHHHHH
Confidence 66763221 22211 1 2344543332222 1222 23444455554444 47777777888888888
Q ss_pred HHHHh
Q 009198 519 VQDYV 523 (540)
Q Consensus 519 ~~~l~ 523 (540)
++.++
T Consensus 334 ~~~l~ 338 (342)
T KOG3923|consen 334 LDALG 338 (342)
T ss_pred HHHhh
Confidence 77654
No 252
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.13 E-value=3.5e-06 Score=92.57 Aligned_cols=43 Identities=40% Similarity=0.619 Sum_probs=39.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
..++|+|||||++||+||+.|++.|++|+|+|+++.+||....
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4579999999999999999999999999999999999998754
No 253
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.13 E-value=3.7e-05 Score=78.99 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=42.9
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+...+.+.++++|+++++++.|++|+. . .|++.+|+++.+|.||+|+|...
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING--N----EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC--C----EEEECCCCEEEeCEEEECcCCCc
Confidence 4667788888999999999999999962 2 36677788899999999998754
No 254
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.12 E-value=4e-06 Score=85.80 Aligned_cols=44 Identities=32% Similarity=0.445 Sum_probs=39.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHH--CCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLAD--AGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~--~g~~v~v~E~~~~~gG~~~~ 98 (540)
....+|+|||||++|++||+.|++ .|++|+|+|+.+.+||....
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 456789999999999999999997 69999999999999997764
No 255
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.10 E-value=3.6e-06 Score=93.23 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=40.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
+..++|+|||||+|||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 4578999999999999999999999999999999999999865
No 256
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.08 E-value=4.1e-05 Score=77.61 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=38.5
Q ss_pred HHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 289 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 289 ~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+.++++|++|++++.|++|.. ++. +.|++.+|+++.||.||+|+|...
T Consensus 193 ~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 193 LQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCCh
Confidence 3444567899999999999974 333 347788898899999999998765
No 257
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.08 E-value=7.3e-05 Score=76.44 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=43.5
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..+.+.+.+.++++|++++++++|++|.. + .|.+.+|+++.+|.||+|+|...
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCC
Confidence 35677788889999999999999999963 2 26678898999999999988543
No 258
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.07 E-value=4e-06 Score=81.86 Aligned_cols=44 Identities=36% Similarity=0.611 Sum_probs=40.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
....+++|||||++|+.||..|++.|++|+++|+++.+||+...
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 34568999999999999999999999999999999999999765
No 259
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=3.1e-05 Score=77.32 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=36.6
Q ss_pred CcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhc
Q 009198 296 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 344 (540)
Q Consensus 296 G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~l 344 (540)
+..| ....|+.+..+++.++++|.|.+|..+.|+.||+|||-+.-..+
T Consensus 115 NL~l-~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 115 NLHL-LQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred Ccee-hHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 3455 35677777763333588999999999999999999998875544
No 260
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.99 E-value=6.8e-06 Score=84.60 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=45.3
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHh
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 342 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~ 342 (540)
..+...+.+.++++|+++++++.|++|.. +++.+ .+.+.+| ++.+|.||+|+|.....
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~-~~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISH-HENQV-QVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE-cCCEE-EEEEcCC-eEEeCEEEEeecCCcCC
Confidence 35667788889999999999999999986 34433 4666666 69999999999876533
No 261
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.99 E-value=8.6e-06 Score=76.23 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=41.7
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 51 SPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 51 ~~~~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
.+....++|.+|||||-.|+++|++.++.|.+|.|+|..-.+||.+-.
T Consensus 14 ~a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 14 MAADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred ccccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 344467899999999999999999999999999999998788876644
No 262
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.99 E-value=9.1e-06 Score=89.01 Aligned_cols=44 Identities=39% Similarity=0.589 Sum_probs=40.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
+...+|+|||||++|++||+.|++.|++|+|+|+.+.+||....
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45679999999999999999999999999999999999997754
No 263
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.95 E-value=0.00018 Score=70.86 Aligned_cols=114 Identities=23% Similarity=0.325 Sum_probs=74.7
Q ss_pred CCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhhccCcceeeecCCCCccch
Q 009198 206 GLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC 285 (540)
Q Consensus 206 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~ 285 (540)
..+.++||++. |++..+.++++.+..+..++.+ .++....+...+. ...++.| -+.|| -.+++
T Consensus 69 ~~t~~e~L~~~----------gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla----~a~~gl~-sV~GG-N~qI~ 131 (368)
T PF07156_consen 69 KVTGEEYLKEN----------GISERFINELVQAATRVNYGQN-VNIHAFAGLVSLA----GATGGLW-SVEGG-NWQIF 131 (368)
T ss_pred HHHHHHHHHHC----------CCCHHHHHHHHHhheEeecccc-cchhhhhhheeee----eccCCce-EecCC-HHHHH
Confidence 46788888888 9999999999999988888765 3444433322111 1123333 34555 47888
Q ss_pred hHHHHHHHHcCcEEEeCcceeEE-EEccCCc-EEEEEEcC--Cc-EEEcCEEEEccCHHH
Q 009198 286 LPIVEHIQSLGGEVRLNSRVQKI-ELNDDGT-VKNFLLTN--GN-VIDGDAYVFATPVDI 340 (540)
Q Consensus 286 ~~l~~~l~~~G~~i~~~t~V~~I-~~~~~~~-~~~V~~~~--G~-~i~a~~VI~A~~~~~ 340 (540)
+.|++. -|+++ ++++|++| ...+++. ...|+..+ +. .-.+|.||+|+|...
T Consensus 132 ~~ll~~---S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 132 EGLLEA---SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred HHHHHH---ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 888765 46789 89999999 4434443 23344443 22 235699999999953
No 264
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.93 E-value=0.0001 Score=73.95 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=42.8
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+...+.+.++++|+++++++.|++|.. + .|++.+|+++.+|.||+|+|...
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCCh
Confidence 4566778888899999999999999852 2 36778888999999999998654
No 265
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.92 E-value=6e-05 Score=77.65 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
++|++|||||.+|..+|.. ..|.+|+|+|++ .+||.+-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeec
Confidence 5899999999999998654 469999999985 56665543
No 266
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.90 E-value=1.2e-05 Score=83.59 Aligned_cols=40 Identities=35% Similarity=0.521 Sum_probs=34.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
++|+|||||++||++|..|.+.|++|+++|+++.+||...
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 5899999999999999999999999999999999999875
No 267
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.90 E-value=1.9e-05 Score=79.58 Aligned_cols=43 Identities=35% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCCeEEEECCChHHHHHHHHHH-HCCCceEEEecCCCCCcceee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~-~~g~~v~v~E~~~~~gG~~~~ 98 (540)
....|+|||||++|+.||.+|+ +.|++|+|+|+.+.+||..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 4568999999999999999875 569999999999999998875
No 268
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.89 E-value=1.3e-05 Score=83.06 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=36.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
.++||+|||||++|+++|..|++.|++|+|+|+ ..+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 358999999999999999999999999999999 66777553
No 269
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.88 E-value=1.7e-05 Score=78.80 Aligned_cols=37 Identities=41% Similarity=0.359 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~g 93 (540)
..||+|||||++|+.+|+.|+++|++|+|+|+++...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 3599999999999999999999999999999877643
No 270
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.87 E-value=2e-05 Score=85.29 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=36.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCc
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG 94 (540)
.+..++|+|||||++|++||++|++.|++|+|+|+.+..|+
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 34678999999999999999999999999999999765544
No 271
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.85 E-value=1.8e-05 Score=82.00 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEc---CCcEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~---~G~~i~a~~VI~A~~~~~ 340 (540)
.+...+.+.+.+.|+++++++.|++|+.++++ ..+++. +++++.+|.||+|+|...
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCc
Confidence 45567778888899999999999999863332 234443 235799999999998754
No 272
>PRK14727 putative mercuric reductase; Provisional
Probab=97.84 E-value=2.3e-05 Score=81.41 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=40.5
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
.+.++|++|||||++|+++|..|++.|.+|+|+|+.+.+||.+..
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 356789999999999999999999999999999998888887644
No 273
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.82 E-value=2.9e-05 Score=83.49 Aligned_cols=43 Identities=40% Similarity=0.612 Sum_probs=39.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
...++|+|||||++|+++|+.|++.|++|+|+|+++.+||...
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 3557999999999999999999999999999999999998764
No 274
>PRK14694 putative mercuric reductase; Provisional
Probab=97.82 E-value=2.3e-05 Score=81.21 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=46.1
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhc
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 344 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~l 344 (540)
..+...+.+.+++.|+++++++.|++|+. +++. +.+.+.++ ++.+|.||+|+|......+
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~-~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDY-NGRE-FILETNAG-TLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE-cCCE-EEEEECCC-EEEeCEEEEccCCCCCcCC
Confidence 35677888888999999999999999986 3333 33566555 7999999999988664443
No 275
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.81 E-value=4.3e-05 Score=57.82 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=32.6
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCCCCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~g 93 (540)
+|+|||||++|+-+|..|++.|.+|+|+++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999987755
No 276
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.78 E-value=0.00026 Score=71.28 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=39.1
Q ss_pred HHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 289 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 289 ~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+.+++.|++++++++|++|..+ ++. ..|.+.+|+++.+|.||+|+|...
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEEEECcCCCc
Confidence 34455678999999999999863 332 357788998999999999998754
No 277
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.78 E-value=0.00024 Score=78.14 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=40.5
Q ss_pred HHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 289 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 289 ~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.+.++++|++|++++.|++|.. ++....|++.+|+++.+|.||+|+|...
T Consensus 189 ~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 189 QRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 3445667899999999999974 3455678889998999999999998754
No 278
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0019 Score=62.17 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=77.4
Q ss_pred cCCCCHHHHHHHhCCCchhhhhcCCChHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh--hccC-cceeeecCCC
Q 009198 204 QDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHG-SKMAFLDGNP 280 (540)
Q Consensus 204 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~g-~~~~~~~gg~ 280 (540)
..+.++.+||+.. ++...+..-++.... ..+..+.+...++.....|+. +.+| ..+.||-.|
T Consensus 220 ~~e~~F~EyL~~~----------rltp~lqs~vl~aIa----M~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYG- 284 (547)
T KOG4405|consen 220 FRERPFSEYLKTM----------RLTPKLQSIVLHAIA----MLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYG- 284 (547)
T ss_pred hhcCcHHHHHHhc----------CCChhhHHHHHHHHH----hcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccC-
Confidence 3467888999988 888776554444332 234444555555544444442 2333 346677766
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCC-cEEEEEEcCCcEEEcCEEEEc
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGNVIDGDAYVFA 335 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~-~~~~V~~~~G~~i~a~~VI~A 335 (540)
-+.|.+.+.+.+.-.|+-..+..+|+.|..+.+. ++..+....|+.+.++++|++
T Consensus 285 qGELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 285 QGELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVS 340 (547)
T ss_pred CCcchHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeec
Confidence 5899999999999999999999999999873322 212233456778899988887
No 279
>PRK13748 putative mercuric reductase; Provisional
Probab=97.76 E-value=2.6e-05 Score=82.96 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=45.7
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ 343 (540)
..+...+.+.+++.|++|++++.|++|+. +++.+ .+.+.++ ++.+|.||+|+|......
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~-~~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAH-VDGEF-VLTTGHG-ELRADKLLVATGRAPNTR 368 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCEE-EEEecCC-eEEeCEEEEccCCCcCCC
Confidence 35667788888899999999999999986 34433 3666666 699999999999865443
No 280
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=0.00034 Score=72.72 Aligned_cols=33 Identities=42% Similarity=0.574 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
.+++|||||.+|+.+|..|++.|.+|+|+|+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 599999999999999999999999999999864
No 281
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.72 E-value=0.00029 Score=69.49 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=50.6
Q ss_pred HHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCC
Q 009198 288 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 346 (540)
Q Consensus 288 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~ 346 (540)
+.+.++++|+++++++.+.+++-+++|++..|.+.+|.++.||.||+.+|...+..++.
T Consensus 261 ~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 44555778999999999999998778899999999999999999999999977665554
No 282
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.72 E-value=3.6e-05 Score=80.24 Aligned_cols=61 Identities=20% Similarity=0.092 Sum_probs=47.7
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 345 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll 345 (540)
.+.+.+.+.++++|+++++++.|++|+.. ++. ..|.+.+|+++.+|.||+|+|......++
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l 283 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDK-IKVLFSDGTTELFDTVLYATGRKPDIKGL 283 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCe-EEEEECCCCEEEcCEEEEeeCCCCCcccc
Confidence 45677888889999999999999999863 333 34677788889999999999886644443
No 283
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.70 E-value=0.00014 Score=80.07 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 293 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 293 ~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
.++|++++++++|++|.. ++ + .|++.+|+++.+|++|+|||...
T Consensus 65 ~~~gv~~~~g~~V~~Id~-~~-k--~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDT-DQ-K--QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHCCCEEEcCCeEEEEEC-CC-C--EEEECCCcEeeCCEEEECCCCCc
Confidence 456899999999999986 33 3 36788888899999999999864
No 284
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.70 E-value=4.2e-05 Score=76.44 Aligned_cols=37 Identities=38% Similarity=0.366 Sum_probs=33.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG 94 (540)
.||+|||||++|+.||+.|++.|++|+|+|+++..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3899999999999999999999999999998876543
No 285
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.68 E-value=5e-05 Score=69.07 Aligned_cols=33 Identities=48% Similarity=0.581 Sum_probs=30.5
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
||+|||||++|++||..|++.|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987643
No 286
>PLN02546 glutathione reductase
Probab=97.68 E-value=9.8e-05 Score=77.49 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=43.9
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ 343 (540)
.+...+.+.++++|++|++++.|++|...+++.+ .|.+.+++...+|.||+|+|......
T Consensus 294 ~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 294 EVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCC
Confidence 4455677888889999999999999986444433 46666664345899999998865443
No 287
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.66 E-value=6.9e-05 Score=77.77 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=38.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999998764
No 288
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.66 E-value=0.00045 Score=71.66 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
.+++|||||.+|+.+|..|++.|.+|+++|+.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 589999999999999999999999999999864
No 289
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.65 E-value=1.8e-05 Score=68.86 Aligned_cols=65 Identities=32% Similarity=0.475 Sum_probs=48.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC--CCceEEEecCCCCCcceeeeccCCCCeeeccceeeccC--cccHHHHHHhcCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA--YPNIQNLFGELGIN 131 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~--g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~ 131 (540)
...||+|||+|-+||++||.++++ ..+|.|+|++-.+||-. | +|++.+... .....-+++++|+.
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa--W---------LGGQLFSAMvvRKPAhLFL~Eigvp 143 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA--W---------LGGQLFSAMVVRKPAHLFLQEIGVP 143 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc--c---------ccchhhhhhhhcChHHHHHHHhCCC
Confidence 456999999999999999999965 67999999998888743 2 455544322 12344567888876
No 290
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.63 E-value=0.00077 Score=69.92 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
.+++|||+|.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 58999999999999999999999999999987543
No 291
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.62 E-value=0.00078 Score=69.81 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=39.0
Q ss_pred HHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHh
Q 009198 290 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 342 (540)
Q Consensus 290 ~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~ 342 (540)
+.+.++|++|++++.|++|+.++ +.+ .|.+.+|+++.+|.||+|+|.....
T Consensus 226 ~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 226 EVFARRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHHHHCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCC
Confidence 44456789999999999998633 333 4667788889999999999876533
No 292
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.62 E-value=7.9e-05 Score=75.57 Aligned_cols=43 Identities=37% Similarity=0.493 Sum_probs=40.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
...+|+|||||++||+||+.|++.|++|+|+|+.+..||.+..
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 3479999999999999999999999999999999999998865
No 293
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.61 E-value=9.9e-05 Score=73.52 Aligned_cols=42 Identities=38% Similarity=0.451 Sum_probs=38.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 456999999999999999999999999999999999998764
No 294
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.60 E-value=7e-05 Score=77.53 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=48.1
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ 343 (540)
..+.+.+.+.++++|++|++++.|++|...+++. ..|.+.+|+++.+|.||+|+|......
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 4567788889999999999999999998643432 346677787899999999998765333
No 295
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.58 E-value=8.5e-05 Score=79.41 Aligned_cols=44 Identities=36% Similarity=0.530 Sum_probs=40.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~ 98 (540)
...++|+|||+|++||+||-.|-+.||.|+|+|+.+++||.+..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 45679999999999999999999999999999999999998754
No 296
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.58 E-value=0.00082 Score=69.66 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHH---CCCceEEEecCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLAD---AGHKPLLLEARDVL 92 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~---~g~~v~v~E~~~~~ 92 (540)
..+++|||||.+|+..|..+.. .|.+|+|+|+.+.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 3589999999999999977654 49999999987654
No 297
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.53 E-value=0.0014 Score=69.59 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=49.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.|++|+.++.++++..+++|++++|.. .+|+ .|.|+.||+|||...
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 5788899998888899999999999998755788989865 3564 578999999998865
No 298
>PLN02507 glutathione reductase
Probab=97.53 E-value=0.00086 Score=69.91 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhh
Q 009198 290 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 343 (540)
Q Consensus 290 ~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ 343 (540)
+.+.+.|++|++++.|++|+..++ .+ .|.+.+|+++.+|.||+|+|......
T Consensus 252 ~~l~~~GI~i~~~~~V~~i~~~~~-~~-~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 252 RNLEGRGINLHPRTNLTQLTKTEG-GI-KVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred HHHHhCCCEEEeCCEEEEEEEeCC-eE-EEEECCCcEEEcCEEEEeecCCCCCC
Confidence 344567899999999999986333 33 46777888899999999998765333
No 299
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.52 E-value=0.00087 Score=69.07 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=38.0
Q ss_pred HHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 290 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 290 ~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
+.+.+.|+++++++.|++|...+++ . .|.+.+|+++.+|.||+|+|...
T Consensus 215 ~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 215 RNMEGRGIRIHPQTSLTSITKTDDG-L-KVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcCCe-E-EEEEcCCcEeecCEEEEeeCCCc
Confidence 3445678999999999999863343 2 46677887899999999998754
No 300
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.50 E-value=0.00011 Score=78.17 Aligned_cols=43 Identities=26% Similarity=0.453 Sum_probs=37.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecC-CCCCcceee
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLGGKIAA 98 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~-~~~gG~~~~ 98 (540)
.++|++|||||.+|..+|..+++.|.+|+|+|+. ..+||.+-.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 3789999999999999999999999999999974 357776544
No 301
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.50 E-value=0.001 Score=68.25 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=36.3
Q ss_pred HHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 290 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 290 ~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
+.+++.|+++++++.|++|.. ++.+ +.+.+|+++.+|.||+|+|...
T Consensus 187 ~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 187 EELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccC
Confidence 344566899999999999974 3333 4566788899999999998754
No 302
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.49 E-value=0.00078 Score=68.75 Aligned_cols=38 Identities=50% Similarity=0.718 Sum_probs=35.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCc
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG 94 (540)
..+++|||+|..|+.+|..|+++|++|+++|+.++++|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch
Confidence 57999999999999999999999999999999877665
No 303
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.49 E-value=0.00012 Score=75.60 Aligned_cols=55 Identities=7% Similarity=0.119 Sum_probs=41.6
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC--cEEEcCEEEEccCHHH
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDI 340 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G--~~i~a~~VI~A~~~~~ 340 (540)
.+.+.+.+.+++.|++|++++.|++|+. +++.+ .+.. +| +++.+|.||+|+|...
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~-~~~~v-~~~~-~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNS-YKKQA-LFEY-EGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEE-cCCEE-EEEE-CCceEEEEeCEEEEecCCcc
Confidence 4667788888889999999999999975 33322 2333 44 3689999999999754
No 304
>PTZ00058 glutathione reductase; Provisional
Probab=97.49 E-value=0.0012 Score=69.41 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..+++|||||.+|+..|..|++.|.+|+|+|+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 4589999999999999999999999999999753
No 305
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.48 E-value=0.0005 Score=67.62 Aligned_cols=37 Identities=32% Similarity=0.394 Sum_probs=27.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCC-CceEEEecCCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLG 93 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g-~~v~v~E~~~~~g 93 (540)
.+|+++||.|+++|+.|..|.+.+ .++..||+++.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~ 39 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS 39 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC
Confidence 469999999999999999999885 8999999987543
No 306
>PRK13984 putative oxidoreductase; Provisional
Probab=97.47 E-value=0.00018 Score=77.18 Aligned_cols=43 Identities=40% Similarity=0.518 Sum_probs=39.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCccee
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~ 97 (540)
....+|+|||+|++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4567899999999999999999999999999999999998664
No 307
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.45 E-value=0.00072 Score=66.86 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=48.2
Q ss_pred eecCCCCccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC-cEEEcCEEEEccCHHH
Q 009198 275 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI 340 (540)
Q Consensus 275 ~~~gg~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G-~~i~a~~VI~A~~~~~ 340 (540)
||.......+++.|.+.+.+.||+|+++++|++|. +++ ..|.+.++ +++.||+||+|||...
T Consensus 79 fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~--~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 79 FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT--LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc--EEEEECCCceEEecCEEEEcCCCcc
Confidence 44333367899999999999999999999999993 333 35776543 4699999999998754
No 308
>PRK07846 mycothione reductase; Reviewed
Probab=97.45 E-value=0.0011 Score=68.23 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=37.5
Q ss_pred cCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009198 295 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 345 (540)
Q Consensus 295 ~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll 345 (540)
.|++++++++|++|+. +++.+ .|.+.+|+++.+|.||+|+|......++
T Consensus 219 ~~v~i~~~~~v~~i~~-~~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQ-DGSGV-TLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred cCeEEEeCCEEEEEEE-cCCEE-EEEECCCcEeecCEEEEEECCccCcccc
Confidence 4688999999999986 33333 4677788889999999999886644443
No 309
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.42 E-value=0.00015 Score=79.50 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHHC--CCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~--g~~v~v~E~~~~ 91 (540)
++|+|||||++||++|+.|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 5899999999999999999998 899999999865
No 310
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.40 E-value=0.00018 Score=74.70 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=45.3
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC---cEEEcCEEEEccCHHHHhhc
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVDILKLQ 344 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G---~~i~a~~VI~A~~~~~~~~l 344 (540)
..+.+.+.+.++++|++|++++.+++|... ++.+ .|++.+| +++.+|.||+|+|......+
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAKV-KVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeE-EEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 356677888889999999999999999863 3332 3555554 37999999999997654433
No 311
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00026 Score=67.43 Aligned_cols=42 Identities=29% Similarity=0.289 Sum_probs=38.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHC--CCceEEEecCCCCCcceee
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAA 98 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~--g~~v~v~E~~~~~gG~~~~ 98 (540)
...|+|||+|++|+.+|++|.++ +.+|+|+|+.+.+.|..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 34999999999999999999995 6899999999999998765
No 312
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0011 Score=58.42 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=44.7
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhc-CCCC
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LPEN 348 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~l-l~~~ 348 (540)
.|++.+.++.++.|.+|.+. .|.++.. +. +...|.++.+ .+.||.||+|||+.+ ++| +|..
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tE-tVskv~~-ss-kpF~l~td~~-~v~~~avI~atGAsA-kRl~~pg~ 132 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITE-TVSKVDL-SS-KPFKLWTDAR-PVTADAVILATGASA-KRLHLPGE 132 (322)
T ss_pred HHHHHHHHHHHhhcceeeee-ehhhccc-cC-CCeEEEecCC-ceeeeeEEEecccce-eeeecCCC
Confidence 56667777778888898765 5888876 33 3344667665 799999999999988 555 5553
No 313
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0015 Score=64.14 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=34.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC-CCCc
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD-VLGG 94 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~-~~gG 94 (540)
...+||||||||-+|..||...++.|.+.+++-.+- .+|-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~ 66 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGE 66 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccc
Confidence 578999999999999999999999999999887653 3443
No 314
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.35 E-value=0.002 Score=66.44 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
.+++|||+|.+|+..|..|++.|.+|+|+|+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4899999999999999999999999999998654
No 315
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.34 E-value=0.002 Score=66.94 Aligned_cols=34 Identities=32% Similarity=0.486 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..+|+|||+|.+|+.+|..|++.|.+|+|+|+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3589999999999999999999999999999753
No 316
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.33 E-value=0.0021 Score=66.53 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
.+++|||||.+|+.+|..|.+.|.+|+|+|+.+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4899999999999999999999999999998754
No 317
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0006 Score=64.18 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=42.1
Q ss_pred cchhHHHHHHHHcCcEEEeCcceeEEEEc-cCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCCC
Q 009198 283 RLCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 348 (540)
Q Consensus 283 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~-~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~~ 348 (540)
+|+.+|.++.++-.+++..-.+++++++. ..+....|++.+|-.+.++.||++||+..-.--+|.+
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE 333 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGE 333 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCch
Confidence 34444555555555566555666667652 2233456899999889999999999996523335553
No 318
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.22 E-value=0.003 Score=65.17 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=37.0
Q ss_pred cCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcC
Q 009198 295 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 345 (540)
Q Consensus 295 ~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll 345 (540)
.|+++++++.|++|+.+ ++.+ .|++.+|+++.+|.||+|+|......++
T Consensus 222 ~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRVPNGDLL 270 (452)
T ss_pred cCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccCcCCCCc
Confidence 36889999999999863 3333 4677778789999999999876544443
No 319
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.16 E-value=0.003 Score=65.98 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
.+++|||||.+|+..|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 48999999999999999999999999999863
No 320
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.14 E-value=0.00043 Score=72.69 Aligned_cols=36 Identities=42% Similarity=0.484 Sum_probs=33.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..++|+||||+|.+|...|..|++.|.+|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 568999999999999999999998899999999974
No 321
>PRK14727 putative mercuric reductase; Provisional
Probab=97.13 E-value=0.0034 Score=65.31 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=38.8
Q ss_pred HHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhc
Q 009198 289 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 344 (540)
Q Consensus 289 ~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~l 344 (540)
.+.+++.|++|++++.|++|+.. ++.+ .|.+.+| ++.+|.||+|+|......+
T Consensus 235 ~~~L~~~GV~i~~~~~V~~i~~~-~~~~-~v~~~~g-~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 235 TACFEKEGIEVLNNTQASLVEHD-DNGF-VLTTGHG-ELRAEKLLISTGRHANTHD 287 (479)
T ss_pred HHHHHhCCCEEEcCcEEEEEEEe-CCEE-EEEEcCC-eEEeCEEEEccCCCCCccC
Confidence 34445678999999999999863 3333 4666666 6999999999998764443
No 322
>PLN02546 glutathione reductase
Probab=97.13 E-value=0.0053 Score=64.66 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
..+|+|||||.+|+-.|..|++.|.+|+|+|+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 35899999999999999999999999999998654
No 323
>PRK14694 putative mercuric reductase; Provisional
Probab=97.11 E-value=0.0047 Score=64.14 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=30.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
.+++|||+|.+|+..|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 58999999999999999999999999999864
No 324
>PRK13748 putative mercuric reductase; Provisional
Probab=97.10 E-value=0.0049 Score=65.73 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
..+++|||||.+|+-.|..|++.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 358999999999999999999999999999974
No 325
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.10 E-value=0.0047 Score=64.12 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
.+++|||||.+|+..|..|++.|.+|+|+|+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 207 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD 207 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 589999999999999999999999999999764
No 326
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.07 E-value=0.0052 Score=65.75 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
.+|+|||||.+|+..|..|++.|.+|+|+|+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4899999999999999999999999999998643
No 327
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.97 E-value=0.0063 Score=63.26 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
.+++|||||.+|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 37999999999999999999999999999863
No 328
>PRK07846 mycothione reductase; Reviewed
Probab=96.91 E-value=0.00093 Score=68.86 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcce
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~ 96 (540)
++|++|||||++|..+|.. ..|.+|+|+|+.. +||.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC 37 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTC 37 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcc
Confidence 4799999999999998866 4599999999864 55544
No 329
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.90 E-value=0.0012 Score=67.06 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCC--ceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~--~v~v~E~~~~ 91 (540)
..+|||||||++|++||..|++.|+ +|+|+++++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3589999999999999999999987 7999998753
No 330
>PLN02785 Protein HOTHEAD
Probab=96.83 E-value=0.0014 Score=69.30 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=32.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
....+|+||||||.+|+.+|..|++ +.+|+|||+..
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 3567999999999999999999999 69999999975
No 331
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.38 E-value=0.0067 Score=61.72 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCc
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG 94 (540)
-+..++|||||+.|+-.|..+++.|.+|||+|+.+++--
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 445899999999999999999999999999999877553
No 332
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.004 Score=58.46 Aligned_cols=37 Identities=38% Similarity=0.489 Sum_probs=32.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~g 93 (540)
...|-|||||.+|..|||.++++|..|.++|-++.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 3468899999999999999999999999999886533
No 333
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0044 Score=58.35 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=45.5
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHHHhh
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDILKL 343 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~~~~ 343 (540)
-+.+++.+.+++++.|+.+...+-+++|+..++++. .|.. ..++ .-.+|.|++|+|-..+.+
T Consensus 237 Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~ 303 (503)
T KOG4716|consen 237 DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTD 303 (503)
T ss_pred cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchh
Confidence 367888889999999999999988899988677763 3332 2222 346899999998865443
No 334
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.25 E-value=0.032 Score=55.02 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=26.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCC--ceEEEecC
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~--~v~v~E~~ 89 (540)
.....+|+|||||.++..++..|.+++. +|+++=++
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS 224 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence 3467799999999999999999999865 78888765
No 335
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.20 E-value=0.006 Score=61.46 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g--~~v~v~E~~~ 90 (540)
++|||||||++|+++|..|.+.+ .+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 58999999999999999998864 5899999865
No 336
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.02 E-value=0.0073 Score=52.31 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
+|+|||||..|.+.|..|+++|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998864
No 337
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.82 E-value=0.011 Score=52.31 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=28.1
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
.|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999864
No 338
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.77 E-value=0.0096 Score=52.96 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
++|.|||.|+.||.+|..|++.|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5799999999999999999999999999998754
No 339
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.74 E-value=0.078 Score=51.79 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=33.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCC-CceEEEecCCCCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLG 93 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g-~~v~v~E~~~~~g 93 (540)
....|++.||-|+.-|+.|..|...+ .+++.||+.+.+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~ 42 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS 42 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC
Confidence 45789999999999999999999874 7899999986543
No 340
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.67 E-value=0.011 Score=61.00 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=34.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CCceEEEecCCCC
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVL 92 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~-g~~v~v~E~~~~~ 92 (540)
....+|.+|||||-+|...|..|++. ..+|+|||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45789999999999999999999998 6799999997554
No 341
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.64 E-value=0.024 Score=59.31 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=45.3
Q ss_pred hHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHH
Q 009198 286 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 340 (540)
Q Consensus 286 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~ 340 (540)
..|.+.++++|.++++++.++.|.. .+++.+|.+++|..+.||-||.|+|...
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEeccccc
Confidence 3467777888999999999998874 6678899999999999999999998754
No 342
>PRK06370 mercuric reductase; Validated
Probab=95.50 E-value=0.03 Score=58.15 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=34.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCc
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG 94 (540)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 208 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP 208 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence 35899999999999999999999999999999876543
No 343
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.47 E-value=0.016 Score=49.73 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 60 v~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
|+|||+|..|...|+.|++.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998864
No 344
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.47 E-value=0.016 Score=56.35 Aligned_cols=36 Identities=42% Similarity=0.567 Sum_probs=31.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC----CCceEEEecCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARD 90 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~----g~~v~v~E~~~ 90 (540)
+..+||+|||||+.|++.|..|... ..+|+|+|...
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 4589999999999999999999865 45999999873
No 345
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.42 E-value=0.02 Score=59.65 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..+|+|||+|.+|+++|..|+++|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999999999999999999765
No 346
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.22 E-value=0.029 Score=57.76 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 348999999999999999999999999999997653
No 347
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.20 E-value=0.038 Score=57.36 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~g 93 (540)
..+++|||||.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4589999999999999999999999999999987654
No 348
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.16 E-value=0.024 Score=55.18 Aligned_cols=33 Identities=42% Similarity=0.467 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
++|.|||+|..|.+.|..|++.|++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999875
No 349
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.024 Score=58.75 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=31.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
+|+|||.|.+|+++|..|.+.|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987653
No 350
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.13 E-value=0.029 Score=51.69 Aligned_cols=67 Identities=30% Similarity=0.516 Sum_probs=45.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHHHHHHhcCCCcc
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 133 (540)
++++|||+|-.|.+.|..|.+.|++|+++|+.+..--...+ -+.+.+.+.+. ..-.+.+++.|++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~--------~~~~~~~v~gd-~t~~~~L~~agi~~a 67 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA--------DELDTHVVIGD-ATDEDVLEEAGIDDA 67 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh--------hhcceEEEEec-CCCHHHHHhcCCCcC
Confidence 57999999999999999999999999999987542111001 01333333322 223466788888753
No 351
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.99 E-value=0.041 Score=53.41 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
-..|.|||+|..|...|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999865
No 352
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.90 E-value=0.04 Score=57.15 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=33.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~g 93 (540)
..+++|||||.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence 3589999999999999999999999999999987653
No 353
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.89 E-value=0.039 Score=56.92 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=33.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~g 93 (540)
..+++|||||.+|+-.|..|++.|.+|+|+|+.+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3589999999999999999999999999999987654
No 354
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.75 E-value=0.051 Score=53.07 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..++|+|||+|..|...|..|++.|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 45689999999999999999999999999998753
No 355
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.72 E-value=0.048 Score=56.56 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=31.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
..+++|||||.+|+..|..|++.|.+|+|+|+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 45899999999999999999999999999998644
No 356
>PRK12831 putative oxidoreductase; Provisional
Probab=94.72 E-value=0.085 Score=54.59 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
...+|+|||||.+|+-+|..|.+.|.+|+|++++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 4569999999999999999999999999999875
No 357
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.71 E-value=0.037 Score=53.92 Aligned_cols=34 Identities=29% Similarity=0.611 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
++|.|||+|+.||++|..|++.||+|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998643
No 358
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.66 E-value=0.093 Score=54.13 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34689999999999999999999999999998763
No 359
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.64 E-value=0.042 Score=56.50 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=33.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~g 93 (540)
.+++|||||.+|+-.|..|++.|.+|+|+|+.+.+.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 589999999999999999999999999999987654
No 360
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.57 E-value=0.053 Score=52.67 Aligned_cols=33 Identities=33% Similarity=0.226 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
.++|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999985
No 361
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.56 E-value=0.068 Score=55.18 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=32.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
..+|+|||||.+|+.+|..|.+.|.+|+++++.+.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 458999999999999999999999999999987653
No 362
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.52 E-value=0.044 Score=49.64 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=29.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...+|+|||+|.++.-+|..|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45799999999999999999999999999998764
No 363
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.48 E-value=0.054 Score=56.23 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
.+++|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 58999999999999999999999999999987654
No 364
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.47 E-value=0.087 Score=44.22 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCc-eEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~-v~v~E~~ 89 (540)
....++|||+|-+|-++++.|.+.|.+ |+|+.|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 567999999999999999999999986 9999875
No 365
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.45 E-value=0.1 Score=55.49 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=49.1
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEE---cCCc--EEEcCEEEEccCHHH
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 340 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~---~~G~--~i~a~~VI~A~~~~~ 340 (540)
..++..|.+.+.+.|++|+.+++|+++.. ++|++++|.. .+|+ .|.|+.||+|||...
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 56889999999989999999999999987 5788988865 3564 578999999998864
No 366
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.44 E-value=0.067 Score=46.89 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=29.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
....|+|+|+|.+|..||..|...|.+|+++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4579999999999999999999999999999975
No 367
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.43 E-value=0.059 Score=51.76 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
..|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998743
No 368
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.42 E-value=0.026 Score=51.45 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=29.4
Q ss_pred EEEECCChHHHHHHHHHHHC--CCceEEEecCCCCCc
Q 009198 60 VVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGG 94 (540)
Q Consensus 60 v~IiG~G~~Gl~~A~~L~~~--g~~v~v~E~~~~~gG 94 (540)
.+||||||+|.+||-.|+.. ..+|+|+-+++.+-.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vks 38 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS 38 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH
Confidence 68999999999999999975 568999988766443
No 369
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.37 E-value=0.054 Score=52.19 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..|.|||+|..|.+.|..|++.|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999763
No 370
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.34 E-value=0.055 Score=52.15 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
+|.|||+|..|...|..|++.|++|+++|.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 69999999999999999999999999999864
No 371
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.33 E-value=0.064 Score=55.65 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=32.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
..+++|||+|.+|+..|..|++.|.+|+|+|+.+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 458999999999999999999999999999987543
No 372
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.19 E-value=0.079 Score=58.79 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=33.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~g 93 (540)
..+++|||||..|+-+|..|++.|.+|+|+|..+.+-
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 3479999999999999999999999999999987643
No 373
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.11 E-value=0.11 Score=39.00 Aligned_cols=41 Identities=32% Similarity=0.466 Sum_probs=34.8
Q ss_pred ccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCC
Q 009198 282 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG 324 (540)
Q Consensus 282 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G 324 (540)
..+...+.+.+++.|+++++++.|++|..++++ +. |+++||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEecC
Confidence 456777888899999999999999999986666 65 888887
No 374
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.00 E-value=0.09 Score=47.60 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...|+|||||.+|..-+..|.+.|.+|+|++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4589999999999999999999999999998653
No 375
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.93 E-value=0.079 Score=54.79 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...|+|||+|.+|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999864
No 376
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.91 E-value=0.077 Score=51.61 Aligned_cols=32 Identities=41% Similarity=0.532 Sum_probs=29.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
++|+|||+|..|...|..|++.|++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999974
No 377
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.90 E-value=0.08 Score=51.15 Aligned_cols=33 Identities=36% Similarity=0.323 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999763
No 378
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.82 E-value=0.05 Score=54.20 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=43.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-------------CceEEEecCCCCCcceeeeccCCCCeeeccceeeccCcccHH
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAG-------------HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQ 122 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g-------------~~v~v~E~~~~~gG~~~~~~~~~g~~~d~G~~~~~~~~~~~~ 122 (540)
...+++|||||++|...|-.|++.- .+|+|+|+.+++--.... .......
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~-----------------~l~~~a~ 216 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPP-----------------KLSKYAE 216 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCH-----------------HHHHHHH
Confidence 4458999999999999999998631 289999998775432221 1233567
Q ss_pred HHHHhcCCCc
Q 009198 123 NLFGELGIND 132 (540)
Q Consensus 123 ~l~~~lgl~~ 132 (540)
+.++++|++.
T Consensus 217 ~~L~~~GV~v 226 (405)
T COG1252 217 RALEKLGVEV 226 (405)
T ss_pred HHHHHCCCEE
Confidence 7888888874
No 379
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.82 E-value=0.083 Score=55.54 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 4699999999999999999999999999998653
No 380
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.79 E-value=0.083 Score=52.37 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=30.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
++|.|||+|..|...|..|++.|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999974
No 381
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.77 E-value=0.11 Score=46.97 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
....|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4569999999999999999999999999999764
No 382
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.77 E-value=0.11 Score=45.21 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCCeEEEECCCh-HHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGAGL-AGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~-~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
..++|+|||+|- .|..+|.+|.+.|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 567999999995 6999999999999999999875
No 383
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.73 E-value=0.088 Score=51.24 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=29.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEec
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~ 88 (540)
++|+|||+|..|...|..|++.|++|+++++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4799999999999999999999999999987
No 384
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.68 E-value=0.12 Score=44.55 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=29.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEe
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E 87 (540)
....|+|||||-.|..-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45689999999999999999999999999995
No 385
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.59 E-value=0.064 Score=42.58 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
....|+|||||-.|..-+..|.+.|.+|+|+....
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45689999999999999999999999999998873
No 386
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.59 E-value=0.089 Score=50.79 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..|.|||+|..|...|..|++.|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 387
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.45 E-value=0.12 Score=46.70 Aligned_cols=36 Identities=36% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
...+|+|||+|..|..+|..|++.|. +++|+|....
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 45689999999999999999999999 6999998744
No 388
>PRK04148 hypothetical protein; Provisional
Probab=93.41 E-value=0.091 Score=43.48 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
...+++||.| .|...|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 999999999999999999998755
No 389
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.35 E-value=0.11 Score=50.00 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
.+|.|||+|..|...|..|++.|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 379999999999999999999999999999764
No 390
>PRK10262 thioredoxin reductase; Provisional
Probab=93.28 E-value=0.13 Score=50.54 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...+|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 34689999999999999999999999999999864
No 391
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.26 E-value=0.12 Score=50.17 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=29.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g--~~v~v~E~~~ 90 (540)
++|.|||+|..|.++|+.|+..| .+|+++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 47999999999999999999998 4899999864
No 392
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=93.25 E-value=0.22 Score=54.99 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCc-eEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~-v~v~E~~ 89 (540)
...+|||||||.+|+-+|..|.+.|.+ |+|++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 446899999999999999999999987 9999875
No 393
>PRK06116 glutathione reductase; Validated
Probab=93.25 E-value=0.13 Score=53.26 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=32.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
..+|+|||+|.+|+.+|..|++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 358999999999999999999999999999987654
No 394
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.24 E-value=0.19 Score=47.38 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=32.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CC-ceEEEecCCC
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GH-KPLLLEARDV 91 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~-g~-~v~v~E~~~~ 91 (540)
...++.|+|||||.+|++.|..+.++ |. +|.|+|-.+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 35789999999999999999999886 55 8999997654
No 395
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.23 E-value=0.14 Score=49.79 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
+.++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45689999999999999999999999999999864
No 396
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.21 E-value=0.12 Score=54.95 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
...+|+|||||.+|+-.|..|++.|.+|+|+++.+.+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 3468999999999999999999999999999987653
No 397
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.04 E-value=0.11 Score=52.87 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
++|.|||.|..|+..|..|++.|++|+++|++..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 3699999999999999999999999999998754
No 398
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.92 E-value=0.14 Score=53.88 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...+|+|||||.+|+.+|..|++.+.+|+|+++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 34699999999999999999999999999998653
No 399
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.92 E-value=0.12 Score=52.46 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
++|.|||.|..|+..|..|++.|++|+++|.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998654
No 400
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.89 E-value=0.17 Score=49.03 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=29.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-ceEEEecC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~ 89 (540)
++|.|||+|..|..+|+.|+..|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999887 89999984
No 401
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.83 E-value=0.12 Score=48.57 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=32.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
-.+.+|+|||||..|..+|..+...|.+|+|+|.+
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 45679999999999999999999999999999987
No 402
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.82 E-value=0.13 Score=45.90 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
......|.|||||..|.-.|...+..|++|.++|++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 35667899999999999999999999999999998754
No 403
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.81 E-value=0.14 Score=50.45 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=30.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
++|.|||+|..|.+.|..|++.|++|+++.++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 369999999999999999999999999998853
No 404
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.78 E-value=0.15 Score=50.12 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
.++|.|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4589999999999999999999999999999853
No 405
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.75 E-value=0.17 Score=50.36 Aligned_cols=33 Identities=33% Similarity=0.343 Sum_probs=29.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCc-eEEEecC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~-v~v~E~~ 89 (540)
...++|||+|.+|+.+|..|.+.|.+ |+|+++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 45899999999999999999999987 9999875
No 406
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.72 E-value=0.17 Score=49.43 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
-.+|.|||+|..|.+.|..|++.|++|+++|.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999753
No 407
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=92.72 E-value=0.16 Score=52.00 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHH--------------CCCceEEEecCCCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLAD--------------AGHKPLLLEARDVLG 93 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~--------------~g~~v~v~E~~~~~g 93 (540)
.+++|||||.+|+..|..|++ .+.+|+|+|+.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc
Confidence 489999999999999999985 378999999876543
No 408
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.68 E-value=0.18 Score=42.29 Aligned_cols=37 Identities=38% Similarity=0.384 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLG 93 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~~g 93 (540)
+.+|+|||+|-.|...|..|++.|. +++|+|....--
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 4689999999999999999999998 799999865433
No 409
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.62 E-value=0.18 Score=50.40 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...+|+|||+|.+|+.+|..|...|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45679999999999999999999999999999853
No 410
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.61 E-value=0.17 Score=48.95 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..|.|||+|..|...|..|++.|++|+++|.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999764
No 411
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.51 E-value=0.16 Score=49.84 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
++|.|||+|..|...|..|++.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999853
No 412
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.47 E-value=0.19 Score=48.62 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
...+|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 3458999999999999999999999999999975
No 413
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.41 E-value=0.21 Score=47.08 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=33.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLG 93 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~~g 93 (540)
....|+|||+|-.|..+|..|++.|. +++|+|.....-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~ 67 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCV 67 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecc
Confidence 45689999999999999999999995 899999875533
No 414
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.29 E-value=0.19 Score=43.78 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=28.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
++|.|||-|..|...|..|.+.|++|+++++++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 579999999999999999999999999999764
No 415
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.19 E-value=0.2 Score=49.61 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCC-CceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g-~~v~v~E~~~ 90 (540)
++|+|||+|-.|..+|+.|+++| .+|+|.+|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 58999999999999999999998 8999999973
No 416
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.11 E-value=0.29 Score=41.35 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=29.6
Q ss_pred CeEEEECC-ChHHHHHHHHHHHCCC--ceEEEecCC
Q 009198 58 LKVVIAGA-GLAGLSTAKYLADAGH--KPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~-G~~Gl~~A~~L~~~g~--~v~v~E~~~ 90 (540)
++|+|||+ |..|.+.|+.|...+. +++++|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999865 799999874
No 417
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.04 E-value=0.21 Score=51.94 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
+-..|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999998744
No 418
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.88 E-value=0.25 Score=51.55 Aligned_cols=35 Identities=40% Similarity=0.509 Sum_probs=31.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
-..|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998754
No 419
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.84 E-value=0.19 Score=48.10 Aligned_cols=32 Identities=34% Similarity=0.407 Sum_probs=29.7
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
+|.|||.|..|.+.|..|++.|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999753
No 420
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.78 E-value=0.26 Score=39.98 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 60 v~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
|+|+|.|-.|...|..|.+.+.+|+++|.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999998779999999864
No 421
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.77 E-value=0.21 Score=50.51 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=33.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~ 92 (540)
.+.|+|+|-|.+|+++|..|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 678999999999999999999999999999977665
No 422
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.77 E-value=0.21 Score=50.13 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=28.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
++|.|||.|..|+..|..++. |++|+++|.+..
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 369999999999999988875 999999998654
No 423
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.74 E-value=0.22 Score=51.19 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCC--CceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g--~~v~v~E~~~~ 91 (540)
+++|.|||+|..|+.+|..|++.| ++|+.+|.+..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 367999999999999999999984 78999997644
No 424
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.71 E-value=0.29 Score=45.12 Aligned_cols=35 Identities=34% Similarity=0.654 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC---ceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~---~v~v~E~~~ 90 (540)
.+.+++|+|+|-+|..+|..|.+.|. +|.|+++..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 44689999999999999999999997 499999873
No 425
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.53 E-value=0.23 Score=51.80 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
++|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 426
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.48 E-value=0.32 Score=50.30 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=31.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
....+|+|+|+|.+|+.++..+...|.+|+++|.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35679999999999999999999999999999875
No 427
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.43 E-value=0.33 Score=47.16 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC--ceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~--~v~v~E~~~ 90 (540)
...+|+|||+|..|.++|+.|+..|. +++|+|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45699999999999999999998876 799999754
No 428
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.42 E-value=0.43 Score=36.36 Aligned_cols=33 Identities=45% Similarity=0.578 Sum_probs=29.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC-CCceEEEec
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEA 88 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~-g~~v~v~E~ 88 (540)
...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 456899999999999999999998 678999988
No 429
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.37 E-value=0.35 Score=43.69 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..+.++|+|.|-.|..+|..|.+.|++|++.|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 44689999999999999999999999999998753
No 430
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.19 Score=47.92 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..+||+|||||-+|+.||.-|+-.=..|+++|=.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 56799999999999999999997767999999543
No 431
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.21 E-value=0.32 Score=46.58 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~ 90 (540)
...+|+|||+|-+|.++|+.|++.|. +|+|+++..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 34689999999999999999999997 799999863
No 432
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.18 E-value=0.32 Score=44.71 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.9
Q ss_pred CeEEEEC-CChHHHHHHHHHHHCCCceEEEecC
Q 009198 58 LKVVIAG-AGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 58 ~dv~IiG-~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
++|.||| +|..|.+.|..|++.|++|++++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4699997 7999999999999999999999765
No 433
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.13 E-value=0.27 Score=47.60 Aligned_cols=33 Identities=39% Similarity=0.516 Sum_probs=29.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
++|.|+|+|..|...|+.|++.|..|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999998788876654
No 434
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.12 E-value=0.32 Score=50.35 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~ 89 (540)
...+|+|||||.+|+-+|..|.+.|. +|+|++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 45689999999999999999999998 89999875
No 435
>PLN02256 arogenate dehydrogenase
Probab=91.02 E-value=0.76 Score=44.49 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
..++|.|||.|..|-+.|..|.+.|++|++++++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 55689999999999999999999999999998763
No 436
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.98 E-value=0.31 Score=50.49 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
.+|+|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999764
No 437
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.94 E-value=0.3 Score=50.61 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
...|+|+|.|.+|.++|..|.+.|.+|++.|.+..
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 35799999999999999999999999999997543
No 438
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.94 E-value=0.33 Score=47.70 Aligned_cols=36 Identities=33% Similarity=0.425 Sum_probs=32.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
....|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 45689999999999999999999998 8999998754
No 439
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.81 E-value=0.38 Score=43.82 Aligned_cols=36 Identities=42% Similarity=0.362 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
....|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 45689999999999999999999998 5999998644
No 440
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.68 E-value=0.63 Score=52.43 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...+|+|||||.+|+-+|..+.+.|.+|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 35689999999999999999999999999998764
No 441
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.63 E-value=0.38 Score=47.32 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
...+|+|||+|-.|..+|..|++.|. +|+|+|....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 45689999999999999999999998 8999998644
No 442
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.53 E-value=0.41 Score=48.16 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
....|+|+|+|..|+.+|..|...|.+|+++|..+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 456899999999999999999999999999998643
No 443
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.52 E-value=0.35 Score=49.91 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...++|+|+|-+|+++|..|++.|.+|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 444
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.43 E-value=0.38 Score=50.21 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=30.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
...|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457999999999999999999999999999965
No 445
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.39 E-value=0.31 Score=53.29 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
..|.|||||..|...|+.++..|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998753
No 446
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.38 E-value=0.42 Score=44.49 Aligned_cols=39 Identities=36% Similarity=0.451 Sum_probs=33.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCCCCc
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGG 94 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~~gG 94 (540)
...+|+|||+|-.|..+|..|++.|. +++|+|....--.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~s 62 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLS 62 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccccc
Confidence 35689999999999999999999997 8999998755333
No 447
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.32 E-value=0.45 Score=46.31 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=29.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-ceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~ 90 (540)
++|+|||+|..|...|+.|+..|. +|+++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 589999999999999999999875 999999854
No 448
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.32 E-value=0.42 Score=49.33 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
...|+|+|.|-+|+++|..|++.|++|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35799999999999999999999999999997654
No 449
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.23 E-value=0.47 Score=45.76 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...+++|||.|.+|..+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45799999999999999999999999999999874
No 450
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.15 E-value=0.38 Score=46.14 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
-..|.|||||..|-..|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 357999999999999999999988999999987
No 451
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.09 E-value=0.42 Score=52.16 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
.-..|.|||||..|...|+.++..|++|+++|.+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999998743
No 452
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.07 E-value=0.49 Score=42.81 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
.+..|+|||.|-.|..+|..|++.|. +++|+|....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 45689999999999999999999997 8999998643
No 453
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.07 E-value=0.49 Score=41.62 Aligned_cols=33 Identities=42% Similarity=0.403 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
+|+|||+|-.|...|..|++.|. +++|+|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 48999999999999999999998 5999998754
No 454
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.99 E-value=0.48 Score=40.15 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=30.7
Q ss_pred eEEEECCChHHHHHHHHHHHCCC-ceEEEecCCCCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLG 93 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~~g 93 (540)
+|+|||+|-.|...|..|++.|. +++|+|....--
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~ 36 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVEL 36 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCc
Confidence 48999999999999999999998 799999875433
No 455
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.98 E-value=0.19 Score=48.70 Aligned_cols=40 Identities=30% Similarity=0.494 Sum_probs=35.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCCCCcc
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~~gG~ 95 (540)
-+...+|||||+.||..+-.-.+.|.+||++|..+.+||.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 4568999999999999999999999999999998777763
No 456
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.96 E-value=0.5 Score=44.16 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
...+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 45799999999999999999999997 8999997643
No 457
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.92 E-value=0.53 Score=45.99 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
.+|+|||+|..|...|+.|+..|. +|+|+|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999996 8999998654
No 458
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.91 E-value=0.15 Score=50.14 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=0.0
Q ss_pred eEEEECCChHHHHHHHHHHH--------------CCCceEEEecCCCC
Q 009198 59 KVVIAGAGLAGLSTAKYLAD--------------AGHKPLLLEARDVL 92 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~--------------~g~~v~v~E~~~~~ 92 (540)
.+||||||++|...|.+|+. .-.+||++|+.+.+
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
No 459
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.87 E-value=0.48 Score=46.08 Aligned_cols=32 Identities=41% Similarity=0.578 Sum_probs=29.2
Q ss_pred eEEEECCChHHHHHHHHHHHCC--CceEEEecCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g--~~v~v~E~~~ 90 (540)
+|+|||+|-.|.++|+.|+..| .+|+++|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999998 4899999864
No 460
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.85 E-value=0.56 Score=42.16 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.4
Q ss_pred CCCeEEEECC-ChHHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~-G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
....++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999997 999999999999999999999765
No 461
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=89.77 E-value=0.97 Score=46.97 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=32.2
Q ss_pred CCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhH
Q 009198 484 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 524 (540)
Q Consensus 484 ~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~~ 524 (540)
+..++||.+||.+... ..+..|+..|+.||..|..+|..
T Consensus 428 Ts~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 428 TSNPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999987642 46788999999999999998863
No 462
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.74 E-value=0.49 Score=45.38 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
....++|||.|-+|.+.|..|...|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999864
No 463
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=89.57 E-value=0.31 Score=47.65 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=52.1
Q ss_pred CccchhHHHHHHHHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHhhcCCC
Q 009198 281 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 347 (540)
Q Consensus 281 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~~ll~~ 347 (540)
|..|.+.-.+.+++.||.++-|+.|.++... .+.+ .+.+.||.+++.|+||+|+|-.....|...
T Consensus 392 Peyls~wt~ekir~~GV~V~pna~v~sv~~~-~~nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 392 PEYLSQWTIEKIRKGGVDVRPNAKVESVRKC-CKNL-VLKLSDGSELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred HHHHHHHHHHHHHhcCceeccchhhhhhhhh-ccce-EEEecCCCeeeeeeEEEEecCCCchhhccc
Confidence 4556777778888899999999999999873 3333 488999999999999999988766666443
No 464
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.54 E-value=0.45 Score=49.29 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHH-HHHHHHHCCCceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLS-TAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~-~A~~L~~~g~~v~v~E~~~~ 91 (540)
....|.|||.|-+|++ +|..|.+.|++|++.|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4457999999999999 59999999999999997653
No 465
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.47 E-value=0.5 Score=48.77 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
...+|+|+|+|..|+.++..+...|.+|+++|.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4579999999999999999999999999999875
No 466
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.45 E-value=0.55 Score=43.45 Aligned_cols=36 Identities=42% Similarity=0.529 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
...+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 45689999999999999999999998 8999987644
No 467
>PRK08328 hypothetical protein; Provisional
Probab=89.44 E-value=0.54 Score=43.52 Aligned_cols=36 Identities=39% Similarity=0.541 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
....|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 45689999999999999999999997 7999987644
No 468
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=89.40 E-value=0.44 Score=39.91 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 60 v~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
++|+|+|..+...|..+...|++|+|+|-++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998743
No 469
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.25 E-value=0.68 Score=44.55 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCc-eEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~-v~v~E~~~ 90 (540)
....++|+|||-+|.++|+.|++.|.+ |+|+.++.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 346899999999999999999999986 99998863
No 470
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.15 E-value=0.53 Score=48.90 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
...|+|+|.|.+|+++|..|.+.|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 346999999999999999999999999999965
No 471
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.14 E-value=0.44 Score=52.16 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
-..|.|||||..|...|+.++..|++|+++|.++.
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 35699999999999999999999999999998753
No 472
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.05 E-value=0.51 Score=48.85 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
++|+|||+|..|...|..|.+.|++|+++|+++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4799999999999999999999999999998654
No 473
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.01 E-value=0.32 Score=40.09 Aligned_cols=36 Identities=39% Similarity=0.502 Sum_probs=28.5
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 54 ~~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
.+...+|.|||+|-.|...|..|.+.|+.|+-+..+
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 356789999999999999999999999999877654
No 474
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=89.00 E-value=0.43 Score=46.09 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.5
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 47899999999999999999999999998864
No 475
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.86 E-value=0.5 Score=48.77 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
...+|+|||+|.+|+-.|..|++.+.+|+++.++
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 5678999999999999999999999999999875
No 476
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.79 E-value=0.64 Score=46.55 Aligned_cols=36 Identities=36% Similarity=0.375 Sum_probs=32.2
Q ss_pred CCCCeEEEEC-CChHHHHHHHHHHHCCCceEEEecCC
Q 009198 55 SKPLKVVIAG-AGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 55 ~~~~dv~IiG-~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
+....|+||| .|..|-+.|..|.+.|++|+++++++
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 3557899999 89999999999999999999999753
No 477
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.79 E-value=0.67 Score=44.13 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
....++|+|+|-+|.++|+.|++.|.+|++++++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3458999999999999999999999999999875
No 478
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.70 E-value=0.8 Score=39.28 Aligned_cols=35 Identities=37% Similarity=0.369 Sum_probs=30.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g-~~v~v~E~~~ 90 (540)
...+++|||+|..|.+.|..|.+.| .+|++++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3568999999999999999999986 7899998763
No 479
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.57 E-value=0.49 Score=48.69 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
++|.|||.|..|...|..|++.|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5899999999999999999999999999998754
No 480
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.47 E-value=0.54 Score=45.59 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=28.2
Q ss_pred EEEECCChHHHHHHHHHHHCCC-ceEEEecCC
Q 009198 60 VVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (540)
Q Consensus 60 v~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~ 90 (540)
|.|||+|..|...|+.|+..|. +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998876 999999864
No 481
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=88.43 E-value=1.5 Score=45.74 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhH
Q 009198 484 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 524 (540)
Q Consensus 484 ~~~~~l~~aG~~~~~~~~~~~~ga~~sg~~aA~~v~~~l~~ 524 (540)
|..+|||.+||-+... ..+..|+..|+.||..|...|..
T Consensus 442 Ts~~gVfAaGD~~~g~--~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 442 TSIPGVFAAGDCRRGQ--SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred ECCCCEEEeeccCCCc--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999987542 46778999999999999998864
No 482
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.38 E-value=0.8 Score=44.61 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC--ceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~--~v~v~E~~~ 90 (540)
...+|+|||+|-.|.++|+.|+..|. +++|+|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 44699999999999999999999887 799999753
No 483
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=88.22 E-value=0.63 Score=45.01 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
+|.|||.|..|...|..|++.|++|+++++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 79999999999999999999999999999864
No 484
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.19 E-value=0.57 Score=48.28 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
...|+|+|.|.+|.++|..|.+ |.+|++.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4579999999999999999995 9999999954
No 485
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=88.15 E-value=0.8 Score=43.81 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g-~~v~v~E~~~ 90 (540)
....++|+|+|-+|.++|+.|++.| .+|+|+.++.
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4568999999999999999999999 6899998863
No 486
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.12 E-value=0.64 Score=44.99 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 58 ~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 369999999999999999999999999998864
No 487
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=88.09 E-value=0.81 Score=48.46 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=39.2
Q ss_pred HHcCcEEEeCcceeEEEEccCCcEEEEEEcCCcEEEcCEEEEccCHHHHh
Q 009198 293 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 342 (540)
Q Consensus 293 ~~~G~~i~~~t~V~~I~~~~~~~~~~V~~~~G~~i~a~~VI~A~~~~~~~ 342 (540)
+++|++++++.+|++|.. +.+. |+++.|.++.+|++|+|||.+.+.
T Consensus 70 ~~~~i~L~~~~~v~~idr--~~k~--V~t~~g~~~~YDkLilATGS~pfi 115 (793)
T COG1251 70 EENGITLYTGEKVIQIDR--ANKV--VTTDAGRTVSYDKLIIATGSYPFI 115 (793)
T ss_pred HHcCcEEEcCCeeEEecc--Ccce--EEccCCcEeecceeEEecCccccc
Confidence 678999999999999986 3343 889999999999999999998643
No 488
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.07 E-value=0.98 Score=49.41 Aligned_cols=34 Identities=29% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHH-HCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~-~~g~~v~v~E~~~ 90 (540)
-..|.|||||..|...|+.++ ..|++|+++|.++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 357999999999999999999 8899999999864
No 489
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=88.03 E-value=0.77 Score=39.38 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
..+.++|+|=|-.|-.+|..|+..|.+|+|.|..+.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 456899999999999999999999999999998764
No 490
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=88.02 E-value=0.76 Score=42.61 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-----------ceEEEecCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGH-----------KPLLLEARD 90 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~-----------~v~v~E~~~ 90 (540)
....+|+|||+|-.|..++..|++.|+ +++|+|...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 467799999999999999999999742 677777643
No 491
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=87.98 E-value=0.6 Score=50.92 Aligned_cols=35 Identities=31% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHH-HCCCceEEEecCCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDV 91 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~-~~g~~v~v~E~~~~ 91 (540)
-..|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 347999999999999999998 58999999998743
No 492
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.94 E-value=0.74 Score=41.46 Aligned_cols=36 Identities=39% Similarity=0.460 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~ 91 (540)
.+.+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 45699999999999999999999998 6999997654
No 493
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=87.92 E-value=0.89 Score=42.45 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=33.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCceEEEecCCC
Q 009198 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (540)
Q Consensus 55 ~~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~~ 91 (540)
.....++|+|+|..+...|..+...|++|+|+|.++.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 3567999999999999999999999999999997654
No 494
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=87.86 E-value=0.91 Score=41.42 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=30.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
....|+|||||-.++.=+..|.+.|.+|+|+-..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5678999999999999999999999999999543
No 495
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=87.86 E-value=0.84 Score=43.74 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~ 89 (540)
...+++|||+|-+|-++|+.|++.|. +|+|+.|.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35689999999999999999999997 79999875
No 496
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=87.85 E-value=1.1 Score=44.95 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=32.6
Q ss_pred CCCCCeEEEECC-ChHHHHHHHHHHHCCCceEEEecC
Q 009198 54 PSKPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (540)
Q Consensus 54 ~~~~~dv~IiG~-G~~Gl~~A~~L~~~g~~v~v~E~~ 89 (540)
....++|+|.|| |..|...+..|.++|++|+.+++.
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 346679999999 999999999999999999999875
No 497
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.84 E-value=0.77 Score=42.38 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=34.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-ceEEEecCCCCCcce
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKI 96 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~-~v~v~E~~~~~gG~~ 96 (540)
....|+|||.|-.|..+|..|++.|. +++|+|.....-..+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl 51 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL 51 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh
Confidence 35689999999999999999999998 899999875544333
No 498
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.83 E-value=0.73 Score=44.63 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=27.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCC--ceEEEecC
Q 009198 59 KVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (540)
Q Consensus 59 dv~IiG~G~~Gl~~A~~L~~~g~--~v~v~E~~ 89 (540)
+|+|||+|..|.++|+.|...+. +++|+|..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 48999999999999999998876 79999974
No 499
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.79 E-value=0.7 Score=48.44 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 57 ~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
...|.|||.|.+|+++|..|.+.|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3479999999999999999999999999999754
No 500
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.72 E-value=0.84 Score=45.79 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCceEEEecCC
Q 009198 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (540)
Q Consensus 56 ~~~dv~IiG~G~~Gl~~A~~L~~~g~~v~v~E~~~ 90 (540)
....|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 45589999999999999999999999999999765
Done!