BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009199
         (540 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EV1|A Chain A, Anabaena Tic22 (Protein Transport)
          Length = 252

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 13/110 (11%)

Query: 186 VGACRLDLAYEHF---KEKPH--LFQFVPNEKQVKAANKLLRTIPDSGRK-KKVDGVPVF 239
           V A  L + Y+     K+ P+  LF F P ++++K A  LLR    SG++  +   VP+F
Sbjct: 80  VTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLR---QSGQQVNQFKSVPMF 136

Query: 240 SAQNLD----IAIATADGIKWYTPYFFDKNMLDNILEESVDQHFHALIQT 285
           + +       + I    G +   P F  K     +L +   +H  A IQ 
Sbjct: 137 AVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPKADIQV 186


>pdb|3QD5|A Chain A, Crystal Structure Of A Putative Ribose-5-Phosphate
           Isomerase From Coccidioides Immitis Solved By Combined
           Iodide Ion Sad And Mr
 pdb|3QD5|B Chain B, Crystal Structure Of A Putative Ribose-5-Phosphate
           Isomerase From Coccidioides Immitis Solved By Combined
           Iodide Ion Sad And Mr
          Length = 167

 Score = 29.3 bits (64), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 436 CEAQGSSYIECTKRNLQLNPFLPKVTMVGIST 467
           C+  G SY E  K +L  NP +  +T VG+++
Sbjct: 19  CDDAGVSYKEALKAHLSDNPLVSSITDVGVTS 50


>pdb|3SDW|A Chain A, Crystal Structure Of A Ribose-5-Phosphate Isomerase B Rpib
           From Coccidioides Immitis Bound To Phosphate
 pdb|3SGW|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase B Rpib
           From Coccidioides Immitis Semi-Covalently Bound To
           Malonic Acid
          Length = 184

 Score = 28.9 bits (63), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 436 CEAQGSSYIECTKRNLQLNPFLPKVTMVGIST 467
           C+  G SY E  K +L  NP +  +T VG+++
Sbjct: 36  CDDAGVSYKEALKAHLSDNPLVSSITDVGVTS 67


>pdb|3SN5|A Chain A, Crystal Structure Of Human Cyp7a1 In Complex With
           Cholest-4-En-3-One
 pdb|3SN5|B Chain B, Crystal Structure Of Human Cyp7a1 In Complex With
           Cholest-4-En-3-One
 pdb|3V8D|A Chain A, Crystal Structure Of Human Cyp7a1 In Complex With
           7-Ketocholesterol
 pdb|3V8D|B Chain B, Crystal Structure Of Human Cyp7a1 In Complex With
           7-Ketocholesterol
          Length = 491

 Score = 28.9 bits (63), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 204 LFQFVPNEKQVKAANK-LLRTIPDSGRKKKVDGVPVFSAQ 242
           LFQ + N + +KAA + + RT+ ++G+K  ++G P+  +Q
Sbjct: 281 LFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQ 320


>pdb|3DAX|A Chain A, Crystal Structure Of Human Cyp7a1
 pdb|3DAX|B Chain B, Crystal Structure Of Human Cyp7a1
          Length = 491

 Score = 28.9 bits (63), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 204 LFQFVPNEKQVKAANK-LLRTIPDSGRKKKVDGVPVFSAQ 242
           LFQ + N + +KAA + + RT+ ++G+K  ++G P+  +Q
Sbjct: 281 LFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQ 320


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,364,809
Number of Sequences: 62578
Number of extensions: 571344
Number of successful extensions: 1303
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 10
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)