Query 009199
Match_columns 540
No_of_seqs 41 out of 43
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 21:04:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev1_A Anabena TIC22; TIC22 fo 100.0 2.7E-31 9.2E-36 255.9 13.5 141 115-278 16-179 (252)
2 4e6z_A Apicoplast TIC22, putat 99.9 5.5E-27 1.9E-31 228.1 10.3 128 115-278 79-230 (279)
3 4ev1_A Anabena TIC22; TIC22 fo 95.1 0.0087 3E-07 58.3 2.5 84 134-220 132-222 (252)
4 4e6z_A Apicoplast TIC22, putat 94.4 0.025 8.6E-07 55.5 3.8 42 231-276 72-118 (279)
5 1o7d_A Lysosomal alpha-mannosi 58.4 3.7 0.00012 40.1 1.7 52 342-393 116-170 (298)
6 2zc2_A DNAD-like replication p 53.3 38 0.0013 26.2 6.5 54 303-358 9-68 (78)
7 4eo3_A Bacterioferritin comigr 51.8 32 0.0011 33.3 7.0 117 171-307 43-170 (322)
8 2wyh_A Alpha-mannosidase; hydr 50.4 6.7 0.00023 43.1 2.4 51 341-392 118-169 (923)
9 3bvx_A Alpha-mannosidase 2; fa 48.7 6.9 0.00024 44.0 2.2 50 343-392 176-226 (1045)
10 3lvt_A Glycosyl hydrolase, fam 46.3 8.4 0.00029 42.5 2.3 49 342-391 100-149 (899)
11 3ic4_A Glutaredoxin (GRX-1); s 45.0 30 0.001 26.0 4.7 36 217-272 56-91 (92)
12 1v58_A Thiol:disulfide interch 43.3 41 0.0014 30.6 6.1 55 213-281 184-238 (241)
13 2pju_A Propionate catabolism o 37.6 1.4E+02 0.0047 28.0 8.8 106 159-276 82-193 (225)
14 2j82_A TPPHA, protein serine-t 34.2 60 0.0021 28.5 5.5 11 510-520 109-119 (240)
15 3or5_A Thiol:disulfide interch 32.7 1.2E+02 0.0042 24.1 6.7 90 174-277 58-152 (165)
16 4gqc_A Thiol peroxidase, perox 32.5 72 0.0025 27.0 5.5 90 177-275 61-156 (164)
17 2cjk_A Nuclear polyadenylated 31.3 1.3E+02 0.0045 24.2 6.7 43 134-178 10-64 (167)
18 2lrn_A Thiol:disulfide interch 30.4 1.7E+02 0.0059 23.3 7.2 61 198-276 81-141 (152)
19 1qxo_A Chorismate synthase; be 29.7 53 0.0018 34.1 4.9 87 172-272 146-244 (388)
20 3fkf_A Thiol-disulfide oxidore 29.1 1.6E+02 0.0056 22.7 6.7 64 194-275 82-145 (148)
21 2lqo_A Putative glutaredoxin R 28.6 85 0.0029 25.3 5.1 61 194-274 20-82 (92)
22 3fw2_A Thiol-disulfide oxidore 28.6 2.2E+02 0.0076 22.6 7.8 65 195-277 85-149 (150)
23 3raz_A Thioredoxin-related pro 26.9 1.3E+02 0.0046 23.9 6.0 80 183-276 57-140 (151)
24 2p8e_A PPM1B beta isoform vari 26.5 50 0.0017 31.0 3.8 11 510-520 143-153 (307)
25 3rpp_A Glutathione S-transfera 26.5 96 0.0033 28.2 5.6 59 265-326 97-161 (234)
26 1txo_A Putative bacterial enzy 25.9 51 0.0017 29.0 3.6 46 475-520 67-115 (237)
27 1vsq_C Mannose-specific phosph 25.9 48 0.0016 30.0 3.4 46 146-191 65-112 (165)
28 2i44_A Serine-threonine phosph 25.5 42 0.0015 31.4 3.1 11 510-520 147-157 (324)
29 3kdj_B Protein phosphatase 2C 25.3 32 0.0011 32.4 2.3 10 511-520 134-143 (316)
30 1ble_A Fructose permease; phos 24.1 51 0.0018 29.8 3.3 46 146-191 63-110 (163)
31 2iq1_A Protein phosphatase 2C 23.8 51 0.0017 30.2 3.2 12 509-520 112-123 (274)
32 1nrz_A PTS system, sorbose-spe 23.6 55 0.0019 29.7 3.4 46 146-191 62-109 (164)
33 2qfj_A FBP-interacting repress 23.4 3.3E+02 0.011 22.8 9.9 46 134-181 35-92 (216)
34 1sq1_A Chorismate synthase; st 23.2 37 0.0013 35.1 2.4 87 172-274 138-233 (370)
35 1r7h_A NRDH-redoxin; thioredox 22.7 1E+02 0.0035 21.7 4.0 55 197-272 20-74 (75)
36 1x4c_A Splicing factor, argini 22.7 2E+02 0.0068 22.5 6.1 47 134-182 22-73 (108)
37 2jfr_A Ser-Thr phosphatase MSP 22.4 68 0.0023 28.1 3.7 45 476-520 64-112 (234)
38 1um0_A Chorismate synthase; be 21.6 60 0.002 33.6 3.5 87 172-274 139-236 (365)
39 2jq6_A EH domain-containing pr 21.5 1.7E+02 0.0057 25.6 5.9 47 127-180 34-80 (139)
40 4h3d_A 3-dehydroquinate dehydr 21.4 33 0.0011 32.6 1.6 18 459-476 201-218 (258)
41 2pk0_A Serine/threonine protei 21.0 77 0.0026 28.1 3.7 11 510-520 113-123 (250)
42 1r53_A Chorismate synthase; tw 20.9 50 0.0017 34.3 2.8 88 172-274 139-245 (382)
No 1
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=99.97 E-value=2.7e-31 Score=255.88 Aligned_cols=141 Identities=22% Similarity=0.387 Sum_probs=120.3
Q ss_pred eeeecccCCCceeeeeeccccCcccccCHHHHHHHHhHHhccCCCCceEEEEeehhHHHHHHHHhCC-----C-------
Q 009199 115 VFSMCDLSGTGLMAVSTHFDIPFISKRTPEWLKKLFATITKSERNGPVFRFFMDLGDAVTYVKQLNI-----P------- 182 (540)
Q Consensus 115 vfsmcd~sg~glmavst~f~iPfi~krt~~w~k~~~~~l~~se~n~sV~~fFms~~DA~AyV~rLkk-----p------- 182 (540)
||++.|-.|..|++....=. .+..-+.+|++||||++||++||++|++ |
T Consensus 16 VF~Itn~~G~Pll~~~~~~~-------------------~~~~~~~~V~~~F~s~~dA~~~L~~lk~~~~~np~~~~~~~ 76 (252)
T 4ev1_A 16 IYLVTNEKGLPLSRPLPNAP-------------------NGQKAGGSITGAYMSRQEAQAFINELRNAKNKDPKMQEIVK 76 (252)
T ss_dssp EEEEECTTCCBCEEECCCCT-------------------TSCCSCSEEEEEESCHHHHHHHHHHHHHCSSCCHHHHHHHT
T ss_pred EEEEECCCCCeEEEecCCcc-------------------ccccCCCeEEEEEecHHHHHHHHHHHHhccccCchhhhhcc
Confidence 78899999988887643100 0111157899999999999999999988 2
Q ss_pred CceEEEeehhHHHHhhh-----cCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeec------eeeeeecc
Q 009199 183 SGVVGACRLDLAYEHFK-----EKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQN------LDIAIATA 251 (540)
Q Consensus 183 s~kVgpVSLd~aYE~~K-----ekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~------LtIavat~ 251 (540)
+++|+|||||+||++++ ++++.|+|||+++||++|++||++.|+ .+++|+|||||++++ |||+ ..
T Consensus 77 ~~kV~~vsL~~vyql~~~~~~k~~~l~F~fvP~~~qV~~A~~Ll~~~Gq--~~~~f~gVPvF~~~~~~~~~~Lti~--~~ 152 (252)
T 4ev1_A 77 SLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQ--QVNQFKSVPMFAVRFAPDQGYVPIK--VG 152 (252)
T ss_dssp TCEEEEEEHHHHHHHHHHTTTCTTCEEEEEECCHHHHHHHHHHHHTTTC--CCSCCCSCEEEEEESSTTSCBCCEE--ET
T ss_pred CceEEEeeHHHHHHHHHhhccCCcCceEEEcCCHHHHHHHHHHHHHcCC--CcccCCCccEEEEecCCCCccEEEE--eC
Confidence 68999999999999984 779999999999999999999999998 788999999999995 9994 22
Q ss_pred CCCeeeeecccchhhHHHHHHHHHHHH
Q 009199 252 DGIKWYTPYFFDKNMLDNILEESVDQH 278 (540)
Q Consensus 252 dGnK~yiPlFFdKEDLD~iLEqsKdQ~ 278 (540)
++++|||||||+|||||++|+++++|+
T Consensus 153 ~~~~~~iPlFF~KedL~~~l~~~kkq~ 179 (252)
T 4ev1_A 153 TGNEQVVPLFLSKQDAQGLLGQVKPKH 179 (252)
T ss_dssp TTTEEEEEEESSHHHHHHHHHHHTTTC
T ss_pred CCCCEEEeeEecHHHHHHHHHHHHHhC
Confidence 239999999999999999999999874
No 2
>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=5.5e-27 Score=228.07 Aligned_cols=128 Identities=21% Similarity=0.262 Sum_probs=111.3
Q ss_pred eeeecccCCCceeeeeeccccCcccccCHHHHHHHHhHHhccCCCCceEEEEeehhHHHHHHHHhCC-------CCceEE
Q 009199 115 VFSMCDLSGTGLMAVSTHFDIPFISKRTPEWLKKLFATITKSERNGPVFRFFMDLGDAVTYVKQLNI-------PSGVVG 187 (540)
Q Consensus 115 vfsmcd~sg~glmavst~f~iPfi~krt~~w~k~~~~~l~~se~n~sV~~fFms~~DA~AyV~rLkk-------ps~kVg 187 (540)
||+..|-.|..+++.. .+.+|+.||||++||++||++|.+ .+++|.
T Consensus 79 VF~Itn~~G~Pll~~~---------------------------~~~~V~~fF~s~~DA~a~L~el~k~~~~~~~~~~kV~ 131 (279)
T 4e6z_A 79 VFLITNYNSSPYIFQE---------------------------NEKQVCYMFLCPYDAENMLNDMIKYNGMKYNGNIKIH 131 (279)
T ss_dssp EEEEECTTCCBCCEEE---------------------------TTEEEEEEESSHHHHHHHHHHHHHHCHHHHTTSCEEE
T ss_pred EEEEEcCCCCEEEecC---------------------------CCCeEEEEECCHHHHHHHHHHHHhccCcccccCceEE
Confidence 7999999999998632 245799999999999999988632 278999
Q ss_pred EeehhHHHHhh-----------------hcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeeceeeeeec
Q 009199 188 ACRLDLAYEHF-----------------KEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIAT 250 (540)
Q Consensus 188 pVSLd~aYE~~-----------------Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIavat 250 (540)
|++||+||++. +.+++.|+|||+++||++|++|++..|+ +++|||||++++|+|
T Consensus 132 pvsL~kvy~l~~~~~~~~~~~i~~~~~~k~~~l~fr~vP~~~qV~~A~~ll~~~gq-----~~~gVPVF~~~~Lti---- 202 (279)
T 4e6z_A 132 NITMKKAYELMKEFLQLEKMEVNKEDSKKKQNIYWKLISSKRQLQNALYYLSFTKK-----SELMYPVFYAENLYI---- 202 (279)
T ss_dssp EEEHHHHHHHHHHHHHHHHC----------CCEEEEEECCHHHHHHHHTTSCTTTS-----TTCCSEEEEETTCCE----
T ss_pred EecHHHHHHHHhhcccccchhcccccccCCcceeeEecCCHHHHHHHHHHHHhcCC-----cCCCccEEEEeeEEE----
Confidence 99999999985 2568999999999999999999988765 588999999999999
Q ss_pred cCCCeeeeecccchhhHHHHHHHHHHHH
Q 009199 251 ADGIKWYTPYFFDKNMLDNILEESVDQH 278 (540)
Q Consensus 251 ~dGnK~yiPlFFdKEDLD~iLEqsKdQ~ 278 (540)
++|+++|+|+||+||||++++++.+++.
T Consensus 203 ~k~~k~iiPlFF~keDL~~~l~q~~~~~ 230 (279)
T 4e6z_A 203 QKDGSNIIPLFFDLEDLKEAIEEQKNKA 230 (279)
T ss_dssp ECSSSEEEEEESSHHHHHHHHHHHHTTC
T ss_pred eeCCeEEEeeEecHHHHHHHHHHhhhcC
Confidence 6899999999999999999999866653
No 3
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=95.08 E-value=0.0087 Score=58.26 Aligned_cols=84 Identities=19% Similarity=0.339 Sum_probs=62.9
Q ss_pred ccC-cccccCHHHHHHHHhHHhccCCCCceEEEEeehhHHHHHHHHhCC--CCceEEEeehhHHHHhhhcCCc----eee
Q 009199 134 DIP-FISKRTPEWLKKLFATITKSERNGPVFRFFMDLGDAVTYVKQLNI--PSGVVGACRLDLAYEHFKEKPH----LFQ 206 (540)
Q Consensus 134 ~iP-fi~krt~~w~k~~~~~l~~se~n~sV~~fFms~~DA~AyV~rLkk--ps~kVgpVSLd~aYE~~Kekpv----~Fr 206 (540)
+|| |+.+-.++ .-+=+|..++++..+.=+||+++|+++.|+++++ |..+|..++|..+-+.++++.- .|.
T Consensus 132 gVPvF~~~~~~~---~~~Lti~~~~~~~~~iPlFF~KedL~~~l~~~kkq~P~~~I~V~~Le~vI~~m~~~~d~~~~~iv 208 (252)
T 4ev1_A 132 SVPMFAVRFAPD---QGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPKADIQVLDIDGVLQTLQDKNDTWLNQVV 208 (252)
T ss_dssp SCEEEEEESSTT---SCBCCEEETTTTEEEEEEESSHHHHHHHHHHHTTTCTTCEEEEEEHHHHHHHHHHCCCGGGGGEE
T ss_pred CccEEEEecCCC---CccEEEEeCCCCCEEEeeEecHHHHHHHHHHHHHhCCCCcEEEeeHHHHHHHHhcCcccccceEE
Confidence 588 77764432 2233344444467788899999999999999976 4889999999999999884432 789
Q ss_pred EecCHHHHHHHHHH
Q 009199 207 FVPNEKQVKAANKL 220 (540)
Q Consensus 207 FVPdekQVKaAkkL 220 (540)
|||..+-++-+.+|
T Consensus 209 fiPs~es~e~i~~~ 222 (252)
T 4ev1_A 209 LVPSPESREYIRTL 222 (252)
T ss_dssp EECCHHHHHHHHTS
T ss_pred EECCHHHHHHHHhc
Confidence 99999877665554
No 4
>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}
Probab=94.36 E-value=0.025 Score=55.53 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=34.0
Q ss_pred CCcCCceeeeeec-----eeeeeeccCCCeeeeecccchhhHHHHHHHHHH
Q 009199 231 KKVDGVPVFSAQN-----LDIAIATADGIKWYTPYFFDKNMLDNILEESVD 276 (540)
Q Consensus 231 kqF~GVPVF~Ar~-----LtIavat~dGnK~yiPlFFdKEDLD~iLEqsKd 276 (540)
+++.+||||...+ |.+ ..+++.+..+||+.+|++++|.+.++
T Consensus 72 EKL~~VPVF~Itn~~G~Pll~----~~~~~~V~~fF~s~~DA~a~L~el~k 118 (279)
T 4e6z_A 72 EKLEVIPVFLITNYNSSPYIF----QENEKQVCYMFLCPYDAENMLNDMIK 118 (279)
T ss_dssp HHSTTSEEEEEECTTCCBCCE----EETTEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEEcCCCCEEEe----cCCCCeEEEEECCHHHHHHHHHHHHh
Confidence 5678999999977 444 35668899999999999999976443
No 5
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=58.43 E-value=3.7 Score=40.13 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcchHHHHhhCCC--CCCcccccccc-hhhhHhhhhhccccccccc
Q 009199 342 LLYAVDRVLLGNRWLRKATGIQ--PKFPYMVDSFE-NRSAASFLRASESTSCLAN 393 (540)
Q Consensus 342 ~~~~vdrvllgn~w~rk~~giq--p~fp~~vDSFE-rrsa~s~~ras~s~s~~~~ 393 (540)
--++++.+++|++|+++..|+- |+.=|+.|+|= -.....|.+.+.=...++.
T Consensus 116 ~eslirQl~~G~~~~~~~fG~~~~~~~~W~pD~FG~s~~lP~il~~~Gi~~~~~~ 170 (298)
T 1o7d_A 116 YGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFG 170 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGCCSEEEESSSSSCCHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCceeEeCCCCCccHHHHHHHHHcCCCeEEEE
Confidence 3567889999999999999998 99999999994 5566777777665555443
No 6
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=53.32 E-value=38 Score=26.23 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=41.6
Q ss_pred HHHHhccCCCCChhHHHHHHHhCCCCCchHHHHHHHHHHH------HHHHHHHhhcchHHHH
Q 009199 303 VVEEIGDSIWEPPEVQEMMDEIGHPAIPLSVISKAAEIQL------LYAVDRVLLGNRWLRK 358 (540)
Q Consensus 303 v~ee~~dslleppEvqe~~~e~g~~~i~~sv~~kaae~q~------~~~vdrvllgn~w~rk 358 (540)
.+|..--..+-|-|.+.+-+-+..-+.+.++|..|.+.-+ +..+|++| +.|.++
T Consensus 9 ~~e~~~gr~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~~~~~s~~Yi~~Il--~~W~~~ 68 (78)
T 2zc2_A 9 DFERELGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNYIQAIL--RNWRHE 68 (78)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTCCCHHHHHHHH--HHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHHc
Confidence 3455445578888888888888888899999999988765 35688888 578876
No 7
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=51.80 E-value=32 Score=33.27 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCCceEEEeehhHHHHhhh---cCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeec-eee
Q 009199 171 DAVTYVKQLNIPSGVVGACRLDLAYEHFK---EKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQN-LDI 246 (540)
Q Consensus 171 DA~AyV~rLkkps~kVgpVSLd~aYE~~K---ekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~-LtI 246 (540)
++.+|- +.+...++|..||.|.++.+-+ +.++.|-.+.|+.. ++.+.-|- .. .|.. .|. ..|
T Consensus 43 e~~~~~-~~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~-----~v~~~ygv---~~--~~~~---~r~tfiI 108 (322)
T 4eo3_A 43 EAVEFS-RENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEG-----ILHEFFNV---LE--NGKT---VRSTFLI 108 (322)
T ss_dssp HHHHHH-HSCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTC-----HHHHHTTC---EE--TTEE---CCEEEEE
T ss_pred HHHHHH-HHhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCch-----HHHHhcCC---CC--CCcC---ccEEEEE
Confidence 345553 3344578999999998887644 66889999998642 22222221 11 1211 122 233
Q ss_pred eeeccCCCeeee--ecccchhhHHHHHH-----HHHHHHHHHHHhhhhhhhccccccchhhHHHHHHh
Q 009199 247 AIATADGIKWYT--PYFFDKNMLDNILE-----ESVDQHFHALIQTRHMQRRRDVIDDNLAAEVVEEI 307 (540)
Q Consensus 247 avat~dGnK~yi--PlFFdKEDLD~iLE-----qsKdQ~fh~liq~Rh~qRrrdv~ddn~~~Ev~ee~ 307 (540)
.++|+=+++ ++= -+.-++.+|+ +..+..++.+|++||.-|+ .-|+.++-|.|+++
T Consensus 109 ---d~~G~i~~~~~~v~-~~~h~~~~l~~~~~~~~~~~~~~~~I~~RRSiR~--F~~~~V~~e~l~~i 170 (322)
T 4eo3_A 109 ---DRWGFVRKEWRRVK-VEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRA--LKKDRVPREELELL 170 (322)
T ss_dssp ---CTTSBEEEEEESCC-STTHHHHHHHHHHHHHHHHTSCCHHHHHCCCCCC--BCCCCCCHHHHHHH
T ss_pred ---CCCCEEEEEEeCCC-ccccHHHHHHHHhhhchhhhHHHHHHHhhhccCC--cCccccCHHHHHHH
Confidence 567766543 321 1222333333 2346778899999999886 34677777777763
No 8
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=50.36 E-value=6.7 Score=43.14 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhcchHHHHhhCCCCCCcccccccc-hhhhHhhhhhcccccccc
Q 009199 341 QLLYAVDRVLLGNRWLRKATGIQPKFPYMVDSFE-NRSAASFLRASESTSCLA 392 (540)
Q Consensus 341 q~~~~vdrvllgn~w~rk~~giqp~fp~~vDSFE-rrsa~s~~ras~s~s~~~ 392 (540)
---.+++..++|+||+++ .|+-|+.=|+.|+|= -..-..|.+.+.-...++
T Consensus 118 ~~es~irq~~~G~~~~~~-fG~~~~~~w~pD~FG~s~~lPqil~~~Gi~~~~~ 169 (923)
T 2wyh_A 118 SSESNVRNMLIGKEDCDR-WGASVPLGYFPDTFGNMGQTPQLMLKAGLQAAAF 169 (923)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCCCSSEEESSCSSBCTTHHHHHHTTTCCEEEE
T ss_pred CHHHHHHHHHHHHHHHHH-cCCCCceeEecCCCCcchHHHHHHHHcCCCEEEE
Confidence 344678899999999999 999999999999994 446777777777665555
No 9
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=48.68 E-value=6.9 Score=43.97 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=39.9
Q ss_pred HHHHHHHhhcchHHHHhhCCCCCCccccccc-chhhhHhhhhhcccccccc
Q 009199 343 LYAVDRVLLGNRWLRKATGIQPKFPYMVDSF-ENRSAASFLRASESTSCLA 392 (540)
Q Consensus 343 ~~~vdrvllgn~w~rk~~giqp~fp~~vDSF-Errsa~s~~ras~s~s~~~ 392 (540)
-.++|-+++|+||+++..|+-|+.=|++|+| --..-..|.+.+.=...++
T Consensus 176 EslirQl~~G~~~~~~~FG~~~~~~W~pD~FG~s~~lPqil~~~Gi~~~~~ 226 (1045)
T 3bvx_A 176 RNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLI 226 (1045)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCEEEECCSSSBCTHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEcCCCCCccHHHHHHHHHcCCCeEEE
Confidence 4678889999999999999999999999999 4456667666665554443
No 10
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}
Probab=46.29 E-value=8.4 Score=42.52 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=38.4
Q ss_pred HHHHHHHHhhcchHHHHhhCCCCCCcccccccc-hhhhHhhhhhccccccc
Q 009199 342 LLYAVDRVLLGNRWLRKATGIQPKFPYMVDSFE-NRSAASFLRASESTSCL 391 (540)
Q Consensus 342 ~~~~vdrvllgn~w~rk~~giqp~fp~~vDSFE-rrsa~s~~ras~s~s~~ 391 (540)
--.+++..++|.+|+|+ .|+-|+.=|++|+|= -..-..|.+.+.=...+
T Consensus 100 ~es~irq~~~G~~~~~~-fG~~~~~~w~~D~FG~s~~lp~i~~~~Gi~~~~ 149 (899)
T 3lvt_A 100 SESNVRNMLIGHLESQK-WGAPVQLGYFPDTFGNMGQTPQMMQLANLPAAA 149 (899)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCCCCCEEESCCCT---THHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHH-cCCCCceeEeCCCCCCchHHHHHHHHcCCCeEE
Confidence 34678889999999999 999999999999994 55666777766665544
No 11
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=45.02 E-value=30 Score=25.96 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=23.6
Q ss_pred HHHHHHHCCCCCCCCCcCCceeeeeeceeeeeeccCCCeeeeecccchhhHHHHHH
Q 009199 217 ANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIATADGIKWYTPYFFDKNMLDNILE 272 (540)
Q Consensus 217 AkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIavat~dGnK~yiPlFFdKEDLD~iLE 272 (540)
+.+|.+..|. .+||++...+-.| .- |++++|+.+|+
T Consensus 56 ~~~l~~~~g~-------~~vP~l~~~g~~i-----------~G--~~~~~l~~~l~ 91 (92)
T 3ic4_A 56 IEKVHSISGS-------YSVPVVVKGDKHV-----------LG--YNEEKLKELIR 91 (92)
T ss_dssp HHHHHHHHSS-------SCSCEEEETTEEE-----------ES--CCHHHHHHHHH
T ss_pred HHHHHHhcCC-------CCcCEEEECCEEE-----------eC--CCHHHHHHHhc
Confidence 4556666544 5899987644333 22 48999988875
No 12
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=43.29 E-value=41 Score=30.61 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCcCCceeeeeeceeeeeeccCCCeeeeecccchhhHHHHHHHHHHHHHHH
Q 009199 213 QVKAANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIATADGIKWYTPYFFDKNMLDNILEESVDQHFHA 281 (540)
Q Consensus 213 QVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIavat~dGnK~yiPlFFdKEDLD~iLEqsKdQ~fh~ 281 (540)
.|+...+|.++. ++.|+|.|...+ .+|.-+.++=+.+.++|..+|++..++|-|+
T Consensus 184 ~v~~~~~l~~~~-------gv~gtPt~vi~~-------~~G~~~~~~G~~~~~~L~~~l~~~~~~~~~~ 238 (241)
T 1v58_A 184 VLSDNEKLMDDL-------GANVTPAIYYMS-------KENTLQQAVGLPDQKTLNIIMGNKLQHHHHH 238 (241)
T ss_dssp HHHHHHHHHHHH-------TCCSSCEEEEEE-------TTTEEEEEESSCCHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHc-------CCCCCCEEEEEC-------CCCCEEEecCCCCHHHHHHHHHHHHHhhccc
Confidence 455555555543 468999876431 2343234666788999999999988888764
No 13
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=37.61 E-value=1.4e+02 Score=28.05 Aligned_cols=106 Identities=9% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCceEEEEeehhHHHHHHHHhCCCCceEEEeehhHHHHhhh------cCCceeeEecCHHHHHHHHHHHHHCCCCCCCCC
Q 009199 159 NGPVFRFFMDLGDAVTYVKQLNIPSGVVGACRLDLAYEHFK------EKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKK 232 (540)
Q Consensus 159 n~sV~~fFms~~DA~AyV~rLkkps~kVgpVSLd~aYE~~K------ekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kq 232 (540)
+.||..+-++--|-..-|++.+.-+.+|+-|....+..-++ .-.+.+..+-++.++..+.+-+++.|
T Consensus 82 ~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G------- 154 (225)
T 2pju_A 82 SVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANG------- 154 (225)
T ss_dssp SSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTT-------
T ss_pred CCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCC-------
Confidence 46777777777777777777766666888887755443333 23566666777888888877777753
Q ss_pred cCCceeeeeeceeeeeeccCCCeeeeecccchhhHHHHHHHHHH
Q 009199 233 VDGVPVFSAQNLDIAIATADGIKWYTPYFFDKNMLDNILEESVD 276 (540)
Q Consensus 233 F~GVPVF~Ar~LtIavat~dGnK~yiPlFFdKEDLD~iLEqsKd 276 (540)
+=|+.-.+++..+|-+-|-+ ++.++ .+|-+...|+++++
T Consensus 155 ---~~vVVG~~~~~~~A~~~Gl~-~vlI~-s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 155 ---TEAVVGAGLITDLAEEAGMT-GIFIY-SAATVRQAFSDALD 193 (225)
T ss_dssp ---CCEEEESHHHHHHHHHTTSE-EEESS-CHHHHHHHHHHHHH
T ss_pred ---CCEEECCHHHHHHHHHcCCc-EEEEC-CHHHHHHHHHHHHH
Confidence 33566666666556656655 77777 66666666665543
No 14
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A
Probab=34.25 E-value=60 Score=28.47 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=9.9
Q ss_pred CCceEEeecCc
Q 009199 510 RDPLFVANVGG 520 (540)
Q Consensus 510 rdPLFvANvg~ 520 (540)
.+-|++|||||
T Consensus 109 ~~~l~~anvGD 119 (240)
T 2j82_A 109 GDRAWCAHVGD 119 (240)
T ss_dssp SSEEEEEEESS
T ss_pred CCEEEEEEEcc
Confidence 66799999999
No 15
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=32.72 E-value=1.2e+02 Score=24.10 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=51.5
Q ss_pred HHHHHhCCCCceEEEeehhH----HHHhhhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeeceeeeee
Q 009199 174 TYVKQLNIPSGVVGACRLDL----AYEHFKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIA 249 (540)
Q Consensus 174 AyV~rLkkps~kVgpVSLd~----aYE~~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIava 249 (540)
++.++++...++|+.|+++. +-+++++.++.|..+-+..++..+ + ... ...++.|+|.+.. |
T Consensus 58 ~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~----~~~~i~~~P~~~l----i--- 123 (165)
T 3or5_A 58 QVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRA--F-NGY----IDGGITGIPTSFV----I--- 123 (165)
T ss_dssp HHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHH--H-HTT----STTCSCSSSEEEE----E---
T ss_pred HHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHH--H-hhh----hccCCCCCCeEEE----E---
Confidence 44455555578999998654 455555677888877777644333 2 111 1125678886432 2
Q ss_pred ccCCCee-eeecccchhhHHHHHHHHHHH
Q 009199 250 TADGIKW-YTPYFFDKNMLDNILEESVDQ 277 (540)
Q Consensus 250 t~dGnK~-yiPlFFdKEDLD~iLEqsKdQ 277 (540)
.++|+-. ...=..+.++|...|++...+
T Consensus 124 d~~G~i~~~~~g~~~~~~l~~~l~~~l~~ 152 (165)
T 3or5_A 124 DASGNVSGVIVGPRSKADFDRIVKMALGA 152 (165)
T ss_dssp CTTSBEEEEECSCCCHHHHHHHHHHHHC-
T ss_pred CCCCcEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 2344432 222345788888888776543
No 16
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=32.48 E-value=72 Score=27.05 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=52.2
Q ss_pred HHhCCCCceEEEeehhHHHHhhh---cCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeeceeeeeeccCC
Q 009199 177 KQLNIPSGVVGACRLDLAYEHFK---EKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIATADG 253 (540)
Q Consensus 177 ~rLkkps~kVgpVSLd~aYE~~K---ekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIavat~dG 253 (540)
++++...++|..||.|....+-+ +.++.|.++.|+.. ++.+.-|- -.....|.+.+..+..-| ..++|
T Consensus 61 ~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~-----~v~~~ygv--~~~~~~~~~~~~~p~tfl--ID~~G 131 (164)
T 4gqc_A 61 AQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNR-----EVIKLYNV--YHEDLKGLKMVAKRAVFI--VKPDG 131 (164)
T ss_dssp GGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTS-----HHHHHTTC--EEEEETTEEEEECCEEEE--ECTTS
T ss_pred HHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCch-----HHHHHcCC--cccccccCcCCeeeEEEE--ECCCC
Confidence 34455577888888776655433 66788888888742 23333322 333445555555454222 25677
Q ss_pred Ceeee---ecccchhhHHHHHHHHH
Q 009199 254 IKWYT---PYFFDKNMLDNILEESV 275 (540)
Q Consensus 254 nK~yi---PlFFdKEDLD~iLEqsK 275 (540)
+=+|+ +...+..+.+.+|++.+
T Consensus 132 ~I~~~~~~~~~~~~~~~~eil~~l~ 156 (164)
T 4gqc_A 132 TVAYKWVTDNPLNEPDYDEVVREAN 156 (164)
T ss_dssp BEEEEEECSCTTCCCCHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCCCHHHHHHHHH
Confidence 65554 55566667777777654
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=31.28 E-value=1.3e+02 Score=24.24 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=30.0
Q ss_pred ccCcccccCHHHHHHHHhHH------------hccCCCCceEEEEeehhHHHHHHHH
Q 009199 134 DIPFISKRTPEWLKKLFATI------------TKSERNGPVFRFFMDLGDAVTYVKQ 178 (540)
Q Consensus 134 ~iPfi~krt~~w~k~~~~~l------------~~se~n~sV~~fFms~~DA~AyV~r 178 (540)
+|| ...|++-|+.+|+.. .++...+--+--|-+.++|++.+++
T Consensus 10 nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 10 GLN--WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp SCC--TTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCC--CCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 466 456889999999874 1222234446668899999999986
No 18
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=30.43 E-value=1.7e+02 Score=23.30 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=32.9
Q ss_pred hhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeeceeeeeeccCCCeeeeecccchhhHHHHHHHHHH
Q 009199 198 FKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIATADGIKWYTPYFFDKNMLDNILEESVD 276 (540)
Q Consensus 198 ~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIavat~dGnK~yiPlFFdKEDLD~iLEqsKd 276 (540)
+++.++.|.++.+..... .++.+.-| +.|+|.+. .| .++|+-.++ +...++|...|++..+
T Consensus 81 ~~~~~~~~~~~~d~~~~~--~~~~~~~~-------v~~~P~~~----li---d~~G~i~~~--~~~~~~l~~~l~~l~~ 141 (152)
T 2lrn_A 81 IEEDKSYWNQVLLQKDDV--KDVLESYC-------IVGFPHII----LV---DPEGKIVAK--ELRGDDLYNTVEKFVN 141 (152)
T ss_dssp HHHHTCCSEEEEECHHHH--HHHHHHTT-------CCSSCEEE----EE---CTTSEEEEE--CCCTTHHHHHHHHHHT
T ss_pred HHHhCCCCeEEecccchh--HHHHHHhC-------CCcCCeEE----EE---CCCCeEEEe--eCCHHHHHHHHHHHHh
Confidence 334456677776653221 23444432 35788542 22 345554443 3578888888876544
No 19
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=29.67 E-value=53 Score=34.13 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=58.2
Q ss_pred HHHHHHHhCCC----CceEEEeehh--------HHHHhhhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceee
Q 009199 172 AVTYVKQLNIP----SGVVGACRLD--------LAYEHFKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVF 239 (540)
Q Consensus 172 A~AyV~rLkkp----s~kVgpVSLd--------~aYE~~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF 239 (540)
|.+||+++.+. -.+|++|..+ ++++...++++ |.||+...+...+++.+... ..+-+.||=-.
T Consensus 146 Ak~~L~~~GI~i~a~v~~iG~i~~~~~~~~~~~~~~~~~~~~~~---~cpd~~~~~~m~~~I~~ak~--~GDS~GGvvev 220 (388)
T 1qxo_A 146 AKRLLAELDMEIANHVVVFGGKEIDVPENLTVAEIKQRAAQSEV---SIVNQEREQEIKDYIDQIKR--DGDTIGGVVET 220 (388)
T ss_dssp HHHHHHHTTCEEEEEEEEETTEECCCCSSCCHHHHHHHHHTSTT---CCSCGGGHHHHHHHHHHHHH--TTCCBCEEEEE
T ss_pred HHHHHHhCCcEEEEEEEEEeCEEcCcccccchhhHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHH--hCCCCceEEEE
Confidence 56788876553 3366666643 22444445554 78998877777777777655 66788999999
Q ss_pred eeeceeeeeeccCCCeeeeecccchhhHHHHHH
Q 009199 240 SAQNLDIAIATADGIKWYTPYFFDKNMLDNILE 272 (540)
Q Consensus 240 ~Ar~LtIavat~dGnK~yiPlFFdKEDLD~iLE 272 (540)
.++|+.+ .=|. |+|++.. ||+.|-
T Consensus 221 v~~gvP~----GLG~----pvf~d~k-Lda~LA 244 (388)
T 1qxo_A 221 VVGGVPV----GLGS----YVQWDRK-LDARLA 244 (388)
T ss_dssp EEESCCT----TCSC----SSSGGGC-HHHHHH
T ss_pred EEecCCC----CcCC----ccccccc-chHHHH
Confidence 9999888 3443 8887632 555554
No 20
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=29.08 E-value=1.6e+02 Score=22.71 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=33.5
Q ss_pred HHHhhhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeeceeeeeeccCCCeeeeecccchhhHHHHHHH
Q 009199 194 AYEHFKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIATADGIKWYTPYFFDKNMLDNILEE 273 (540)
Q Consensus 194 aYE~~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIavat~dGnK~yiPlFFdKEDLD~iLEq 273 (540)
+-+++++.++.|..+-+..... .++.+.- ++.|+|.+. .| ..+|+-.++-. +.++|...|++
T Consensus 82 ~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~-------~v~~~P~~~----li---d~~G~i~~~~~--~~~~l~~~l~~ 143 (148)
T 3fkf_A 82 WETAIKKDTLSWDQVCDFTGLS--SETAKQY-------AILTLPTNI----LL---SPTGKILARDI--QGEALTGKLKE 143 (148)
T ss_dssp HHHHHHHTTCCSEEECCSCGGG--CHHHHHT-------TCCSSSEEE----EE---CTTSBEEEESC--CHHHHHHHHHH
T ss_pred HHHHHHHcCCCceEEEccCCcc--hHHHHhc-------CCCCcCEEE----EE---CCCCeEEEecC--CHHHHHHHHHH
Confidence 3344445566666666542111 1233332 235888642 22 34555444433 88888888876
Q ss_pred HH
Q 009199 274 SV 275 (540)
Q Consensus 274 sK 275 (540)
..
T Consensus 144 ll 145 (148)
T 3fkf_A 144 LL 145 (148)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 21
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=28.60 E-value=85 Score=25.30 Aligned_cols=61 Identities=11% Similarity=-0.005 Sum_probs=36.8
Q ss_pred HHHhhhcCCceeeEecCHHHHHHHHHHHHHC-CCCCCCCCcCCceeeee-eceeeeeeccCCCeeeeecccchhhHHHHH
Q 009199 194 AYEHFKEKPHLFQFVPNEKQVKAANKLLRTI-PDSGRKKKVDGVPVFSA-QNLDIAIATADGIKWYTPYFFDKNMLDNIL 271 (540)
Q Consensus 194 aYE~~Kekpv~FrFVPdekQVKaAkkLLK~~-GQg~~~kqF~GVPVF~A-r~LtIavat~dGnK~yiPlFFdKEDLD~iL 271 (540)
+=++|+++++.|..+-..+.-+++.++++.. |+ ..||+.+- .+=.+ . =|+.++|.+.|
T Consensus 20 aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~-------~tVP~I~i~Dg~~l----------~---~~~~~el~~~L 79 (92)
T 2lqo_A 20 LKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGN-------RTVPTVKFADGSTL----------T---NPSADEVKAKL 79 (92)
T ss_dssp HHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSS-------SCSCEEEETTSCEE----------E---SCCHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCC-------CEeCEEEEeCCEEE----------e---CCCHHHHHHHH
Confidence 3455667778888776655555556666654 33 57996542 33222 1 15788888877
Q ss_pred HHH
Q 009199 272 EES 274 (540)
Q Consensus 272 Eqs 274 (540)
.+.
T Consensus 80 ~el 82 (92)
T 2lqo_A 80 VKI 82 (92)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 22
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=28.59 E-value=2.2e+02 Score=22.60 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHhhhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeeceeeeeeccCCCeeeeecccchhhHHHHHHHH
Q 009199 195 YEHFKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIATADGIKWYTPYFFDKNMLDNILEES 274 (540)
Q Consensus 195 YE~~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIavat~dGnK~yiPlFFdKEDLD~iLEqs 274 (540)
-+++++.++.|.++.+..... .++.+.-+ +.|+|-+ +.| .++|+-.++= .+.++|+..|++.
T Consensus 85 ~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~-------v~~~P~~----~li---d~~G~i~~~~--~~~~~l~~~l~~l 146 (150)
T 3fw2_A 85 KDAIKRDTLDWEQVCDFGGLN--SEVAKQYS-------IYKIPAN----ILL---SSDGKILAKN--LRGEELKKKIENI 146 (150)
T ss_dssp HHHHHHTTCCSEEECCSCGGG--CHHHHHTT-------CCSSSEE----EEE---CTTSBEEEES--CCHHHHHHHHHHH
T ss_pred HHHHHHhCCCceEEEcCcccc--hHHHHHcC-------CCccCeE----EEE---CCCCEEEEcc--CCHHHHHHHHHHH
Confidence 344446677777777652111 12333322 3478854 223 4566554443 3888888888876
Q ss_pred HHH
Q 009199 275 VDQ 277 (540)
Q Consensus 275 KdQ 277 (540)
.++
T Consensus 147 l~~ 149 (150)
T 3fw2_A 147 VEE 149 (150)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 23
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=26.91 E-value=1.3e+02 Score=23.91 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=39.7
Q ss_pred CceEEEeehh---HHHHhhhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeeceeeeeeccCCCeee-e
Q 009199 183 SGVVGACRLD---LAYEHFKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIATADGIKWY-T 258 (540)
Q Consensus 183 s~kVgpVSLd---~aYE~~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIavat~dGnK~y-i 258 (540)
.++|+.|+.| .+-+++++.++.|..+-+... ...++.+.-|. ...|+|.+. .| .++|+-.+ .
T Consensus 57 ~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~v~~~P~~~----li---d~~G~i~~~~ 122 (151)
T 3raz_A 57 SVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGA--NSRNFMKTYGN-----TVGVLPFTV----VE---APKCGYRQTI 122 (151)
T ss_dssp TEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCS--CHHHHHHTTTC-----CSCCSSEEE----EE---ETTTTEEEEC
T ss_pred CeEEEEEECCChHHHHHHHHHcCCCCceEecCcc--chHHHHHHhCC-----ccCCCCEEE----EE---CCCCcEEEEE
Confidence 4555555554 233344455666655432211 11334444331 356888421 22 34554333 2
Q ss_pred ecccchhhHHHHHHHHHH
Q 009199 259 PYFFDKNMLDNILEESVD 276 (540)
Q Consensus 259 PlFFdKEDLD~iLEqsKd 276 (540)
.-..+.++|...|++...
T Consensus 123 ~g~~~~~~l~~~l~~l~~ 140 (151)
T 3raz_A 123 TGEVNEKSLTDAVKLAHS 140 (151)
T ss_dssp CSCCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 334578889888886654
No 24
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=26.52 E-value=50 Score=30.96 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=9.6
Q ss_pred CCceEEeecCc
Q 009199 510 RDPLFVANVGG 520 (540)
Q Consensus 510 rdPLFvANvg~ 520 (540)
.+-|+||||||
T Consensus 143 ~~~l~vanvGD 153 (307)
T 2p8e_A 143 PKHIYFINCGD 153 (307)
T ss_dssp SSEEEEEEESS
T ss_pred CCcEEEEEccC
Confidence 45699999999
No 25
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=26.46 E-value=96 Score=28.18 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHH------HHHHHHhhhhhhhccccccchhhHHHHHHhccCCCCChhHHHHHHHhCC
Q 009199 265 NMLDNILEESVDQ------HFHALIQTRHMQRRRDVIDDNLAAEVVEEIGDSIWEPPEVQEMMDEIGH 326 (540)
Q Consensus 265 EDLD~iLEqsKdQ------~fh~liq~Rh~qRrrdv~ddn~~~Ev~ee~~dslleppEvqe~~~e~g~ 326 (540)
-++..++..++.+ .|+..|+..+-.+.+||.|+..-.++.++.| |++-|+.++++.+..
T Consensus 97 ~~a~r~~~aa~~~~~~~~~~~~~al~~A~~~~g~di~d~~~L~~~a~~~G---Ld~~~~~~~l~~~~s 161 (234)
T 3rpp_A 97 LSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAG---MSAEQAQGLLEKIAT 161 (234)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTT---CCHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcC---CCHHHHHHHHHHccC
Confidence 4555666654433 5777777777777889988777777777765 566677777766543
No 26
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A
Probab=25.94 E-value=51 Score=28.97 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhccc--CCCCCCCc-ccCCCCceEEeecCc
Q 009199 475 KANLKKTMENLTKELEQTDQENA--TSSGSNEY-IIEDRDPLFVANVGG 520 (540)
Q Consensus 475 kanlkktMedltkelE~~~~~~~--~~~gs~~~-~~~drdPLFvANvg~ 520 (540)
+..|+++++.+.+++.+..+.+. .+.|+--. -.-+.+-|+||||||
T Consensus 67 ~~~l~~a~~~~~~~i~~~~~~~~~~~~~gtT~~~~~i~~~~l~~a~vGD 115 (237)
T 1txo_A 67 LAKLDAAVRAGNSAIAAQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGD 115 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGTTCEECEEEEEEETTEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCcceEEEEEEECCEEEEEEEcc
Confidence 34567777777666655433321 11222221 112345699999999
No 27
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=25.91 E-value=48 Score=30.04 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=33.8
Q ss_pred HHHHHhHHhccC-CCCceEEEEeehhHHHHHHH-HhCCCCceEEEeeh
Q 009199 146 LKKLFATITKSE-RNGPVFRFFMDLGDAVTYVK-QLNIPSGVVGACRL 191 (540)
Q Consensus 146 ~k~~~~~l~~se-~n~sV~~fFms~~DA~AyV~-rLkkps~kVgpVSL 191 (540)
.+++...|.+.. .+..++-+|=+-+||..+++ -+..+++.||.++.
T Consensus 65 ve~ai~~~~~~~~~~~~v~ll~k~p~d~~~lve~Gv~i~~iNvG~m~~ 112 (165)
T 1vsq_C 65 VAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAF 112 (165)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEESSHHHHHHHHHTTCCCSEEEEEECCC
T ss_pred HHHHHHHHhccccCCcEEEEEECCHHHHHHHHHcCCCCCEEEECCCcC
Confidence 445566666543 45779999999999999996 46677788887753
No 28
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}
Probab=25.48 E-value=42 Score=31.37 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=9.5
Q ss_pred CCceEEeecCc
Q 009199 510 RDPLFVANVGG 520 (540)
Q Consensus 510 rdPLFvANvg~ 520 (540)
.+=||||||||
T Consensus 147 ~~~l~vanvGD 157 (324)
T 2i44_A 147 KGFVAVGHLGD 157 (324)
T ss_dssp TTEEEEEEESS
T ss_pred CCeEEEEEccC
Confidence 45699999999
No 29
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Probab=25.35 E-value=32 Score=32.41 Aligned_cols=10 Identities=50% Similarity=0.850 Sum_probs=9.1
Q ss_pred CceEEeecCc
Q 009199 511 DPLFVANVGG 520 (540)
Q Consensus 511 dPLFvANvg~ 520 (540)
+-|+||||||
T Consensus 134 ~~l~vanvGD 143 (316)
T 3kdj_B 134 SHIFVANCGD 143 (316)
T ss_dssp SEEEEEEESS
T ss_pred CEEEEEEccC
Confidence 5699999999
No 30
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=24.13 E-value=51 Score=29.78 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=34.2
Q ss_pred HHHHHhHHhccC-CCCceEEEEeehhHHHHHHH-HhCCCCceEEEeeh
Q 009199 146 LKKLFATITKSE-RNGPVFRFFMDLGDAVTYVK-QLNIPSGVVGACRL 191 (540)
Q Consensus 146 ~k~~~~~l~~se-~n~sV~~fFms~~DA~AyV~-rLkkps~kVgpVSL 191 (540)
.+++...|.+.. .+..++-+|=+-+||..+++ -+..+++.||.++.
T Consensus 63 ve~ai~~~~~~~~~~~~v~ll~k~p~d~~~lve~Gv~i~~iNvG~m~~ 110 (163)
T 1ble_A 63 VSKMAKAFHSPRYEGVTAMLLFENPSDIVSLIEAGVPIKTVNVGGMRF 110 (163)
T ss_dssp HHHHHHHHHCSTTTTCEEEEEESSSHHHHHHHTTTCCCCEEEEEEBCC
T ss_pred HHHHHHHHhcccCCCceEEEEECCHHHHHHHHHcCCCCCEEEECCCCC
Confidence 455666676653 46778999999999999995 56677888887763
No 31
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens}
Probab=23.77 E-value=51 Score=30.25 Aligned_cols=12 Identities=50% Similarity=0.565 Sum_probs=9.9
Q ss_pred CCCceEEeecCc
Q 009199 509 DRDPLFVANVGG 520 (540)
Q Consensus 509 drdPLFvANvg~ 520 (540)
+.+-|+||||||
T Consensus 112 ~~~~l~~anvGD 123 (274)
T 2iq1_A 112 DGIELVVASVGD 123 (274)
T ss_dssp TTTEEEEEEESS
T ss_pred CCCEEEEEEecC
Confidence 335699999999
No 32
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=23.62 E-value=55 Score=29.69 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=33.6
Q ss_pred HHHHHhHHhccC-CCCceEEEEeehhHHHHHHH-HhCCCCceEEEeeh
Q 009199 146 LKKLFATITKSE-RNGPVFRFFMDLGDAVTYVK-QLNIPSGVVGACRL 191 (540)
Q Consensus 146 ~k~~~~~l~~se-~n~sV~~fFms~~DA~AyV~-rLkkps~kVgpVSL 191 (540)
.+++...|.+.. .+..++-+|=+-+||..+++ -+..+++.||.++.
T Consensus 62 ve~ai~~~~~~~~~~~~v~ll~k~p~d~~~lve~Gv~i~~iNvG~m~~ 109 (164)
T 1nrz_A 62 LEKAVAVYHNPQYQDETVFYLFTNPHDVLTMVRQGVQIATLNIGGMAW 109 (164)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEESSHHHHHHHHTTTCCCSEEEEEEBCC
T ss_pred HHHHHHHHhcccCCCceEEEEECCHHHHHHHHHcCCCCCEEEECCCcC
Confidence 455566666653 46779999999999999995 46667777777653
No 33
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=23.36 E-value=3.3e+02 Score=22.83 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=31.3
Q ss_pred ccCcccccCHHHHHHHHhHHh------------ccCCCCceEEEEeehhHHHHHHHHhCC
Q 009199 134 DIPFISKRTPEWLKKLFATIT------------KSERNGPVFRFFMDLGDAVTYVKQLNI 181 (540)
Q Consensus 134 ~iPfi~krt~~w~k~~~~~l~------------~se~n~sV~~fFms~~DA~AyV~rLkk 181 (540)
.|| ...|++-|+.+|+..- ++...+-.+--|-+.++|++.++.|+.
T Consensus 35 nLp--~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 92 (216)
T 2qfj_A 35 SIY--YELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS 92 (216)
T ss_dssp CCC--TTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS
T ss_pred CCC--CCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC
Confidence 567 3568888999998741 122233345567799999999998764
No 34
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=23.24 E-value=37 Score=35.13 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=56.2
Q ss_pred HHHHHHHhCCC----CceEEEeehhHH-----HHhhhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeee
Q 009199 172 AVTYVKQLNIP----SGVVGACRLDLA-----YEHFKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQ 242 (540)
Q Consensus 172 A~AyV~rLkkp----s~kVgpVSLd~a-----YE~~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar 242 (540)
|.+||+++.+. -.+|+++..+.. ++...++++ |.||+...+...+++.+... ..+-+.||=-..++
T Consensus 138 Ak~~L~~~GI~i~a~v~~iG~i~~~~~~~~~~~~~~~~~~~---~cpd~~~~~~m~~~I~~~k~--~gDS~GGvve~v~~ 212 (370)
T 1sq1_A 138 AAMLLREFDICVQSGVFGVGTFVSNLKEEEFDFEFAKKSEI---FCLDPKLESDFKNEILNARN--SKDSVGAAVFTKVS 212 (370)
T ss_dssp HHHHHHTTTCEEEEEEEEETTEECCSCGGGSCHHHHHHSTT---CBSCTTTHHHHHHHHHHHHH--TTCCCCEEEEEEEE
T ss_pred HHHHHHHCCcEEEEEEEEECCEecCCCcCccCHHHHhcCCC---CCCCHHHHHHHHHHHHHHHH--hCCCCeEEEEEEEE
Confidence 55677765443 336666665422 223234443 78888777777777776655 66788999999999
Q ss_pred ceeeeeeccCCCeeeeecccchhhHHHHHHHH
Q 009199 243 NLDIAIATADGIKWYTPYFFDKNMLDNILEES 274 (540)
Q Consensus 243 ~LtIavat~dGnK~yiPlFFdKEDLD~iLEqs 274 (540)
|+.+ .=|. |+ |+| ||+.|-++
T Consensus 213 gvP~----GLG~----pv-fdk--Lda~LA~A 233 (370)
T 1sq1_A 213 GMLI----GLGE----VL-YDK--LDSKLAHA 233 (370)
T ss_dssp SCCB----SCSB----TT-TBC--HHHHHHHH
T ss_pred cCCC----CCCC----cc-ccc--chHHHHHH
Confidence 9988 3343 55 566 67777643
No 35
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=22.70 E-value=1e+02 Score=21.67 Aligned_cols=55 Identities=9% Similarity=0.075 Sum_probs=27.5
Q ss_pred hhhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeeceeeeeeccCCCeeeeecccchhhHHHHHH
Q 009199 197 HFKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQNLDIAIATADGIKWYTPYFFDKNMLDNILE 272 (540)
Q Consensus 197 ~~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~LtIavat~dGnK~yiPlFFdKEDLD~iLE 272 (540)
.+++.++.|.++...+.-+.+..+ +..| +.+||++...+-.+ . =|++++|...|+
T Consensus 20 ~l~~~~i~~~~~di~~~~~~~~~~-~~~~-------~~~vP~l~~~g~~~-----------~--g~~~~~l~~~l~ 74 (75)
T 1r7h_A 20 ALDRAGLAYNTVDISLDDEARDYV-MALG-------YVQAPVVEVDGEHW-----------S--GFRPERIKQLQA 74 (75)
T ss_dssp HHHHTTCCCEEEETTTCHHHHHHH-HHTT-------CBCCCEEEETTEEE-----------E--SCCHHHHHHHHC
T ss_pred HHHHcCCCcEEEECCCCHHHHHHH-HHcC-------CCccCEEEECCeEE-----------c--CCCHHHHHHHHh
Confidence 333445556655543322222333 4433 36899886433222 1 157777777664
No 36
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.67 E-value=2e+02 Score=22.50 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=30.6
Q ss_pred ccCcccccCHHHHHHHHhHHhccC-----CCCceEEEEeehhHHHHHHHHhCCC
Q 009199 134 DIPFISKRTPEWLKKLFATITKSE-----RNGPVFRFFMDLGDAVTYVKQLNIP 182 (540)
Q Consensus 134 ~iPfi~krt~~w~k~~~~~l~~se-----~n~sV~~fFms~~DA~AyV~rLkkp 182 (540)
.|| ...|++.|+.+|...-.-. .++--+--|-+.+||++.|+.|+..
T Consensus 22 nLp--~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~ 73 (108)
T 1x4c_A 22 GLP--PSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNT 73 (108)
T ss_dssp SCC--SSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSE
T ss_pred CCC--CCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcC
Confidence 466 4568899999998642110 0122233466889999999998764
No 37
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A
Probab=22.41 E-value=68 Score=28.10 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCCCc-ccCCCCc---eEEeecCc
Q 009199 476 ANLKKTMENLTKELEQTDQENATSSGSNEY-IIEDRDP---LFVANVGG 520 (540)
Q Consensus 476 anlkktMedltkelE~~~~~~~~~~gs~~~-~~~drdP---LFvANvg~ 520 (540)
..|+++++.+-++|.+....+....|+--. -.-+.+- |++|||||
T Consensus 64 ~~l~~~~~~~~~~l~~~~~~~~~~~gtT~~~~~i~~~~~~~l~~anvGD 112 (234)
T 2jfr_A 64 DGLLEAVQQANLRVFELLGDEPTVSGTTLTAVAVFEPGQGGPLVVNIGD 112 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCEECEEEEECCCGGGTSCEEEEESS
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccEEEEEEECCCccEEEEEEEcc
Confidence 345555666656555443322110122111 1112334 99999999
No 38
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=21.59 E-value=60 Score=33.58 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=56.5
Q ss_pred HHHHHHHhCCC----CceEEEeehhHH-HHhhhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCCcCCceeeeeec---
Q 009199 172 AVTYVKQLNIP----SGVVGACRLDLA-YEHFKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKKVDGVPVFSAQN--- 243 (540)
Q Consensus 172 A~AyV~rLkkp----s~kVgpVSLd~a-YE~~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kqF~GVPVF~Ar~--- 243 (540)
|.+||+++.+. -.+|+++..+.. ++...++++ |.||+...+...+++.+... ..+-+.||=-..++|
T Consensus 139 Ak~~L~~~gI~i~~~v~~iG~i~~~~~~~~~~~~~~~---~cpd~~~~~~m~~~I~~ak~--~gDSiGGvve~v~~g~~~ 213 (365)
T 1um0_A 139 AKMLLREIGIVCESGIIEIGGIKAKNYDFNHALKSEI---FALDEEQEEAQKTAIQNAIK--NHDSIGGVALIRARSIKT 213 (365)
T ss_dssp HHHHHHHTTEEEEEEEEEETTEECSSCCHHHHHHSTT---CBSCHHHHHHHHHHHHHHHH--TTCCBCEEEEEEEEESST
T ss_pred HHHHHHHCCcEEEEEEEEECCEecCcCCHHHHhcCCC---CCCCHHHHHHHHHHHHHHHH--hCCCCeEEEEEEEEcccc
Confidence 55678775432 335666654310 233334543 88999888888888877755 667889999999999
Q ss_pred ---eeeeeeccCCCeeeeecccchhhHHHHHHHH
Q 009199 244 ---LDIAIATADGIKWYTPYFFDKNMLDNILEES 274 (540)
Q Consensus 244 ---LtIavat~dGnK~yiPlFFdKEDLD~iLEqs 274 (540)
+.+ .=|. |+ |+| ||+.|-++
T Consensus 214 ~~~vP~----GLG~----pv-fdk--Lda~LA~A 236 (365)
T 1um0_A 214 NQKLPI----GLGQ----GL-YAK--LDAKIAEA 236 (365)
T ss_dssp TCCCCS----CCSB----TT-TBC--HHHHHHHH
T ss_pred cCcCCC----CCCC----cc-ccc--chHHHHHH
Confidence 777 3333 55 566 67766543
No 39
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=21.54 E-value=1.7e+02 Score=25.63 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=35.1
Q ss_pred eeeeeccccCcccccCHHHHHHHHhHHhccCCCCceEEEEeehhHHHHHHHHhC
Q 009199 127 MAVSTHFDIPFISKRTPEWLKKLFATITKSERNGPVFRFFMDLGDAVTYVKQLN 180 (540)
Q Consensus 127 mavst~f~iPfi~krt~~w~k~~~~~l~~se~n~sV~~fFms~~DA~AyV~rLk 180 (540)
.+....-+++++...-.+-|+++|..+- +.+| ||+.+++..++.++.
T Consensus 34 ~~~~~~~~~~W~~~~e~~~l~~~F~~fD--d~dG-----~Is~~El~~~l~~~g 80 (139)
T 2jq6_A 34 GAGEGIDDVEWVVGKDKPTYDEIFYTLS--PVNG-----KITGANAKKEMVKSK 80 (139)
T ss_dssp CCCCCCSCCCCGGGGTHHHHHHHHHHSC--CSSS-----EEEHHHHHHHHHHTT
T ss_pred ccccCccCCCCCChHHHHHHHHHHHHhC--CCCC-----eECHHHHHHHHHHhC
Confidence 3344445577777777888999999987 5565 678899999998865
No 40
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=21.37 E-value=33 Score=32.56 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=14.1
Q ss_pred eeeEEeeecCcccccchH
Q 009199 459 KVTMVGISTGEAGQMTKA 476 (540)
Q Consensus 459 KiTMvGiS~ge~gqmska 476 (540)
+..+++++||+.|++||.
T Consensus 201 ~~P~I~~~MG~~G~~SRi 218 (258)
T 4h3d_A 201 DRPIITMSMSGMGVISRL 218 (258)
T ss_dssp SSCBEEEECTGGGGGGGT
T ss_pred CCCEEEEeCCCCChHHHH
Confidence 334667899999999985
No 41
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae}
Probab=21.00 E-value=77 Score=28.06 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=9.7
Q ss_pred CCceEEeecCc
Q 009199 510 RDPLFVANVGG 520 (540)
Q Consensus 510 rdPLFvANvg~ 520 (540)
.+-|++|||||
T Consensus 113 ~~~l~~anvGD 123 (250)
T 2pk0_A 113 GDNIIFAHVGD 123 (250)
T ss_dssp TTEEEEEEESS
T ss_pred CCeEEEEEeCC
Confidence 46699999999
No 42
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=20.88 E-value=50 Score=34.27 Aligned_cols=88 Identities=22% Similarity=0.314 Sum_probs=58.2
Q ss_pred HHHHHHH-hCCC----CceEEEeehhHH--------------HHhhhcCCceeeEecCHHHHHHHHHHHHHCCCCCCCCC
Q 009199 172 AVTYVKQ-LNIP----SGVVGACRLDLA--------------YEHFKEKPHLFQFVPNEKQVKAANKLLRTIPDSGRKKK 232 (540)
Q Consensus 172 A~AyV~r-Lkkp----s~kVgpVSLd~a--------------YE~~Kekpv~FrFVPdekQVKaAkkLLK~~GQg~~~kq 232 (540)
|.+||++ +.+. -.+|+++..+.. ++...++++ -|.||+...+...+++.+... ..+-
T Consensus 139 Ak~~L~~~~GI~i~a~v~~iG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~cpd~~~~~~m~~~I~~ak~--~GDS 214 (382)
T 1r53_A 139 AEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITREKVDSMGP--IRCPDASVAGLMVKEIEKYRG--NKDS 214 (382)
T ss_dssp HHHHHHHTTCCEEEEEEEEETTEECCCCTTCHHHHHHHHHCCHHHHHHTCT--TCCCCHHHHHHHHHHHHHHHH--TTCC
T ss_pred HHHHHHhcCCcEEEEEEEEEcCEecccccccccccccccccCHHHHhcCCC--ccCCCHHHHHHHHHHHHHHHH--hCCC
Confidence 5678876 3443 336777765422 122234442 378999888888888777755 6678
Q ss_pred cCCceeeeeeceeeeeeccCCCeeeeecccchhhHHHHHHHH
Q 009199 233 VDGVPVFSAQNLDIAIATADGIKWYTPYFFDKNMLDNILEES 274 (540)
Q Consensus 233 F~GVPVF~Ar~LtIavat~dGnK~yiPlFFdKEDLD~iLEqs 274 (540)
+.||=-..++|+.+ .=|. |+ |+| ||+.|-++
T Consensus 215 ~GGvvevv~~gvP~----GLG~----pv-fdk--Lda~LA~A 245 (382)
T 1r53_A 215 IGGVVTCVVRNLPT----GLGE----PC-FDK--LEAMLAHA 245 (382)
T ss_dssp CCEEEEEEEESCCT----TCSB----TT-TBC--HHHHHHHH
T ss_pred CceEEEEEEecCCC----CCCC----cc-ccc--chHHHHHH
Confidence 89999999999888 3443 55 666 67766543
Done!