Query 009200
Match_columns 540
No_of_seqs 240 out of 844
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 21:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 95.2 3.7 0.00013 46.3 24.6 81 113-196 90-172 (724)
2 2k1a_A Integrin alpha-IIB; sin 11.8 3E+02 0.01 19.3 4.1 17 280-296 2-18 (42)
3 1g70_B RSG-1.2 peptide; peptid 11.0 69 0.0023 19.7 0.5 13 5-17 2-14 (26)
4 2knc_A Integrin alpha-IIB; tra 7.7 5.1E+02 0.017 19.1 4.2 12 285-296 9-20 (54)
5 2rnl_A Amphiregulin; AR, color 5.3 1E+02 0.0035 22.3 -0.7 25 496-520 18-42 (50)
6 2l8s_A Integrin alpha-1; trans 5.3 7.9E+02 0.027 18.1 4.1 12 285-296 6-17 (54)
7 2p4r_T E3 ubiquitin-protein li 4.2 6E+02 0.021 16.0 2.3 19 5-23 4-22 (26)
8 3e50_C Protransforming growth 3.8 1.7E+02 0.0059 21.1 -0.5 26 495-520 13-38 (50)
9 3qds_A Boletus edulis lectin; 3.6 2.8E+02 0.0097 24.5 0.7 21 502-522 77-97 (143)
10 1iox_A Betacellulin; EGF-like 3.6 2E+02 0.0068 20.6 -0.3 36 484-520 3-38 (50)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=95.19 E-value=3.7 Score=46.33 Aligned_cols=81 Identities=4% Similarity=-0.080 Sum_probs=54.1
Q ss_pred HHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhhhhhhhccc--cCcchHHHHHHHHH
Q 009200 113 PASWLFAEDKVRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTS--FLPSSFSMYAISLA 190 (540)
Q Consensus 113 ~~~~~lg~~~~~~~~~~Rl~lallsa~~d~~~~~~~~~~~g~~~a~~~l~l~~~s~~~~~~str--tlpnSf~m~~~~~a 190 (540)
.+.+++|.+ .-.+.+.+-+++++++-..+|-.+++..|.+.|....++.+.+++...=+.. .=.+.++..+.+++
T Consensus 90 ~l~~i~g~s---l~~v~~~lp~ifg~L~vi~~yll~~el~~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~ 166 (724)
T 3rce_A 90 WLYSILPFS---FESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLI 166 (724)
T ss_dssp HHHHSCSSC---HHHHHHHHHHHHGGGGHHHHHHHHHHTTCHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHH
T ss_pred HHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 344456655 3456777778888888888888888888888888888888899974332222 33455565555555
Q ss_pred HHHHhh
Q 009200 191 SGFFLL 196 (540)
Q Consensus 191 l~~~l~ 196 (540)
++.+.+
T Consensus 167 ~~~~i~ 172 (724)
T 3rce_A 167 LLTFIR 172 (724)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=11.80 E-value=3e+02 Score=19.29 Aligned_cols=17 Identities=6% Similarity=-0.158 Sum_probs=10.7
Q ss_pred CccccccchhHHHHHhh
Q 009200 280 SHLYGIEGPLYYLRNAF 296 (540)
Q Consensus 280 s~~yGt~Pw~~Y~~~~l 296 (540)
++.....||+-++...+
T Consensus 2 ~~~~~~vp~wiIi~s~l 18 (42)
T 2k1a_A 2 ALEERAIPIWWVLVGVL 18 (42)
T ss_dssp CSSCCCCCHHHHHHHHH
T ss_pred CCCcCCcchHHHHHHHH
Confidence 44555678887776553
No 3
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=10.99 E-value=69 Score=19.66 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=8.3
Q ss_pred ccccCCCCCCCCC
Q 009200 5 TRQRRPLPSDPPP 17 (540)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (540)
+|||+++|+++..
T Consensus 2 rrrrgsrpsgaer 14 (26)
T 1g70_B 2 RRRRGSRPSGAER 14 (26)
T ss_pred ccccCCCCchHHH
Confidence 5677777766544
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.72 E-value=5.1e+02 Score=19.12 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=7.7
Q ss_pred ccchhHHHHHhh
Q 009200 285 IEGPLYYLRNAF 296 (540)
Q Consensus 285 t~Pw~~Y~~~~l 296 (540)
..||+.++...+
T Consensus 9 ~vp~wiIi~svl 20 (54)
T 2knc_A 9 AIPIWWVLVGVL 20 (54)
T ss_dssp TCCHHHHHHHHH
T ss_pred CcchHHHHHHHH
Confidence 468877766544
No 5
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=5.32 E-value=1e+02 Score=22.32 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.0
Q ss_pred ccCCCCCCcEEEeccCCcchhhhhh
Q 009200 496 QFVILPLPAGLIEIYTALCLCILHP 520 (540)
Q Consensus 496 ~yv~~~~Cdy~vd~~~~~~~~~~~~ 520 (540)
.|--..+|-|+.|++.+.|.|.-.|
T Consensus 18 ~yC~nG~C~~i~~~~~~~C~C~~gy 42 (50)
T 2rnl_A 18 NFCIHGECKYIEHLEAVTCKCQQEY 42 (50)
T ss_dssp GTCSSSEEEEETTTTEEEEECCSSC
T ss_pred CcCCCCEEEEecCCCCeeEECCCCc
Confidence 3433369999999999999997543
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=5.32 E-value=7.9e+02 Score=18.12 Aligned_cols=12 Identities=25% Similarity=0.041 Sum_probs=7.4
Q ss_pred ccchhHHHHHhh
Q 009200 285 IEGPLYYLRNAF 296 (540)
Q Consensus 285 t~Pw~~Y~~~~l 296 (540)
..||+.++...+
T Consensus 6 ~vp~WiIi~svl 17 (54)
T 2l8s_A 6 RVPLWVILLSAF 17 (54)
T ss_dssp CCCTHHHHHHHH
T ss_pred cCchHHHHHHHH
Confidence 457777765543
No 7
>2p4r_T E3 ubiquitin-protein ligase itchy homolog; SH3 domain peptide ligand complex; 2.00A {Rattus norvegicus}
Probab=4.17 E-value=6e+02 Score=15.98 Aligned_cols=19 Identities=42% Similarity=0.812 Sum_probs=11.6
Q ss_pred ccccCCCCCCCCCCCCCCC
Q 009200 5 TRQRRPLPSDPPPSSPIYT 23 (540)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (540)
+.+|..++.-+||+++-+.
T Consensus 4 ~~~rP~rPsrPpP~tp~r~ 22 (26)
T 2p4r_T 4 KPSRPPRPSRPPPPTPRRP 22 (26)
T ss_pred ccCCCCCCCCCCCCCCCCc
Confidence 4566677777777655433
No 8
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=3.82 E-value=1.7e+02 Score=21.14 Aligned_cols=26 Identities=19% Similarity=0.200 Sum_probs=19.3
Q ss_pred CccCCCCCCcEEEeccCCcchhhhhh
Q 009200 495 QQFVILPLPAGLIEIYTALCLCILHP 520 (540)
Q Consensus 495 ~~yv~~~~Cdy~vd~~~~~~~~~~~~ 520 (540)
+.|--..+|-|+.|++.+.|.|.-.|
T Consensus 13 ~~yC~nG~C~~~~~~~~~~C~C~~gy 38 (50)
T 3e50_C 13 TQFCFHGTCRFLVQEDKPACVCHSGY 38 (50)
T ss_pred cCcccCCEEeeccCCCCeEEECCCCC
Confidence 44533359999999999999997543
No 9
>3qds_A Boletus edulis lectin; mushroom, T-antigen, carbohydrate, S binding, sugar binding protein; 1.15A {Boletus edulis} SCOP: b.97.1.2 PDB: 3qdt_A* 3qdu_A* 3qdv_A* 3qdw_A* 3qdx_A* 3qdy_A* 1x99_A* 1xi0_A
Probab=3.63 E-value=2.8e+02 Score=24.54 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=18.5
Q ss_pred CCcEEEeccCCcchhhhhhhH
Q 009200 502 LPAGLIEIYTALCLCILHPLF 522 (540)
Q Consensus 502 ~Cdy~vd~~~~~~~~~~~~~~ 522 (540)
=||.++|+...+-.+.+||=.
T Consensus 77 WcDIvt~L~~~~T~~~~~PeY 97 (143)
T 3qds_A 77 WCDVVTGLKPEETALVINPQY 97 (143)
T ss_dssp EEEEECSCCTTCCHHHHGGGG
T ss_pred ceeEEcccCCCccceecChhh
Confidence 499999999999999999853
No 10
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=3.58 E-value=2e+02 Score=20.63 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=0.0
Q ss_pred CCcccccccCCCccCCCCCCcEEEeccCCcchhhhhh
Q 009200 484 SYFNNENKASDQQFVILPLPAGLIEIYTALCLCILHP 520 (540)
Q Consensus 484 ~~~Nd~N~ee~~~yv~~~~Cdy~vd~~~~~~~~~~~~ 520 (540)
.|++.=+.+..+.=+. .+|-|+.|++.+.|.|.-.|
T Consensus 3 ~h~~~C~~~~~~yC~n-G~C~~~~~~~~~~C~C~~gy 38 (50)
T 1iox_A 3 GHFSRCPKQYKHYCIK-GRCRFVVAEQTPSCVCDEGY 38 (50)
T ss_dssp CCCEECCGGGTTSCTT-CCEEEETTTTEEEECCCTTE
T ss_pred CcccccChhhcCcccC-CEEEeEcCCCCeEEECCCCc
Done!