Query 009200
Match_columns 540
No_of_seqs 240 out of 844
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 21:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009200.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009200hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xdtr_ g.3.11.1 (R:) Heparin- 11.4 14 0.001 24.4 -1.2 19 501-519 13-31 (41)
2 d2cu8a1 g.39.1.3 (A:8-37) Cyst 8.3 35 0.0025 20.9 -0.1 10 434-443 18-27 (30)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 6.8 2.3E+02 0.017 16.2 3.1 13 406-418 14-26 (27)
4 d1deka_ c.37.1.1 (A:) Deoxynuc 4.9 1.9E+02 0.014 24.3 3.0 15 498-512 212-226 (241)
5 d1vm6a3 c.2.1.3 (A:1-96,A:183- 4.5 1.5E+02 0.011 23.4 1.7 16 500-515 39-54 (128)
6 d1jjcb1 a.6.1.1 (B:1-38,B:152- 4.3 1.8E+02 0.013 21.0 1.9 17 502-518 38-58 (77)
7 d1yw6a1 c.56.5.7 (A:1-322) Suc 3.8 1.5E+02 0.011 27.0 1.3 13 501-513 138-150 (322)
8 d1yl7a1 c.2.1.3 (A:2-105,A:215 3.3 2.3E+02 0.016 22.5 1.9 15 501-515 43-57 (135)
9 d2j5la1 g.61.1.1 (A:479-512) A 3.3 2.5E+02 0.018 17.0 1.5 14 493-507 15-28 (34)
10 d1ioxa_ g.3.11.1 (A:) Betacell 2.8 1.2E+02 0.0084 20.3 -0.5 25 495-519 13-37 (50)
No 1
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.43 E-value=14 Score=24.38 Aligned_cols=19 Identities=16% Similarity=0.196 Sum_probs=16.9
Q ss_pred CCCcEEEeccCCcchhhhh
Q 009200 501 PLPAGLIEIYTALCLCILH 519 (540)
Q Consensus 501 ~~Cdy~vd~~~~~~~~~~~ 519 (540)
.+|-|+.|++.+.|.|.--
T Consensus 13 G~C~~i~~l~~~~C~C~~g 31 (41)
T d1xdtr_ 13 GECKYVKELRAPSCICHPG 31 (41)
T ss_dssp EEECCBGGGTBCCEEECTT
T ss_pred cEEeecCcCCCceeECCCC
Confidence 8899999999999999643
No 2
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.28 E-value=35 Score=20.86 Aligned_cols=10 Identities=40% Similarity=1.219 Sum_probs=8.5
Q ss_pred cceeccccee
Q 009200 434 VVCVGSEWHR 443 (540)
Q Consensus 434 ~vC~g~ewyr 443 (540)
..|.||.||+
T Consensus 18 ~~~lgk~WHk 27 (30)
T d2cu8a1 18 VSSLGKDWHK 27 (30)
T ss_dssp EEETTEEEET
T ss_pred hccCCccccc
Confidence 4599999997
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.77 E-value=2.3e+02 Score=16.16 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=9.2
Q ss_pred HHHHHhccccchh
Q 009200 406 TFSLVNGYAAPIE 418 (540)
Q Consensus 406 ~~~l~~~Y~apl~ 418 (540)
..+-|+||.-|-+
T Consensus 14 f~aayqqykrpne 26 (27)
T d2e74g1 14 FYAAYQQYKRPNE 26 (27)
T ss_dssp HHHHHHHTTSCCC
T ss_pred HHHHHHHhcCCCC
Confidence 5566888887743
No 4
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}
Probab=4.93 E-value=1.9e+02 Score=24.27 Aligned_cols=15 Identities=7% Similarity=-0.199 Sum_probs=11.7
Q ss_pred CCCCCCcEEEeccCC
Q 009200 498 VILPLPAGLIEIYTA 512 (540)
Q Consensus 498 v~~~~Cdy~vd~~~~ 512 (540)
.+...|||+||.|..
T Consensus 212 ~~~~~aD~vI~N~gs 226 (241)
T d1deka_ 212 LPIRDGDLVITNDGS 226 (241)
T ss_dssp CCCCTTCEEEECCSC
T ss_pred hccCCCCEEEECCCC
Confidence 345679999999874
No 5
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}
Probab=4.52 E-value=1.5e+02 Score=23.36 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.7
Q ss_pred CCCCcEEEeccCCcch
Q 009200 500 LPLPAGLIEIYTALCL 515 (540)
Q Consensus 500 ~~~Cdy~vd~~~~~~~ 515 (540)
++.+|-+||...|++.
T Consensus 39 ~~~~DVvIDFS~p~~~ 54 (128)
T d1vm6a3 39 LDSPDVVIDFSSPEAL 54 (128)
T ss_dssp CSCCSEEEECSCGGGH
T ss_pred hccCCEEEEecCHHHH
Confidence 4679999999999875
No 6
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=4.28 E-value=1.8e+02 Score=20.98 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=13.5
Q ss_pred CCcEEEeccC----Ccchhhh
Q 009200 502 LPAGLIEIYT----ALCLCIL 518 (540)
Q Consensus 502 ~Cdy~vd~~~----~~~~~~~ 518 (540)
.+|.++|++. ++|+|+.
T Consensus 38 ~~d~iidieitPNR~Dcls~~ 58 (77)
T d1jjcb1 38 VEEVVLDLEVTPNRPDALGLL 58 (77)
T ss_dssp CCCEEEEECCCTTCSGGGSHH
T ss_pred cccceeeeeecCCcHHHhccc
Confidence 4799999984 6888874
No 7
>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE {Escherichia coli [TaxId: 562]}
Probab=3.83 E-value=1.5e+02 Score=26.95 Aligned_cols=13 Identities=15% Similarity=0.077 Sum_probs=10.7
Q ss_pred CCCcEEEeccCCc
Q 009200 501 PLPAGLIEIYTAL 513 (540)
Q Consensus 501 ~~Cdy~vd~~~~~ 513 (540)
+.||+++|+=+..
T Consensus 138 ~~~d~~lDLHs~~ 150 (322)
T d1yw6a1 138 ESVRWHLDLHTAI 150 (322)
T ss_dssp CSCEEEEEEECCS
T ss_pred ccceEEEECCCCC
Confidence 6799999998653
No 8
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.33 E-value=2.3e+02 Score=22.47 Aligned_cols=15 Identities=7% Similarity=-0.051 Sum_probs=13.0
Q ss_pred CCCcEEEeccCCcch
Q 009200 501 PLPAGLIEIYTALCL 515 (540)
Q Consensus 501 ~~Cdy~vd~~~~~~~ 515 (540)
..||.+||...|+..
T Consensus 43 ~~~DvvIDFS~p~~~ 57 (135)
T d1yl7a1 43 GNTEVVIDFTHPDVV 57 (135)
T ss_dssp TTCSEEEECCCTTTH
T ss_pred ccCCEEEEcccHHHH
Confidence 469999999999875
No 9
>d2j5la1 g.61.1.1 (A:479-512) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=3.29 E-value=2.5e+02 Score=17.02 Aligned_cols=14 Identities=7% Similarity=-0.097 Sum_probs=9.8
Q ss_pred CCCccCCCCCCcEEE
Q 009200 493 SDQQFVILPLPAGLI 507 (540)
Q Consensus 493 e~~~yv~~~~Cdy~v 507 (540)
||++ ++.+.|+|+|
T Consensus 15 eP~~-~s~StC~FyV 28 (34)
T d2j5la1 15 DPEM-VSQSTCRFFV 28 (34)
T ss_dssp CCEE-CCCSSCCCEE
T ss_pred Chhh-hccCcccEEE
Confidence 3444 4678999987
No 10
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.77 E-value=1.2e+02 Score=20.34 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=18.3
Q ss_pred CccCCCCCCcEEEeccCCcchhhhh
Q 009200 495 QQFVILPLPAGLIEIYTALCLCILH 519 (540)
Q Consensus 495 ~~yv~~~~Cdy~vd~~~~~~~~~~~ 519 (540)
+.|=-...|=|++|.+.+.|.|---
T Consensus 13 ~~yC~nGgcc~~~~~~~~~C~C~~g 37 (50)
T d1ioxa_ 13 KHYCIKGRCRFVVAEQTPSCVCDEG 37 (50)
T ss_dssp TTSCTTCCEEEETTTTEEEECCCTT
T ss_pred CCCccCCeEEEeCCCCCcEeECCCC
Confidence 3454446788899999999999643
Done!