Query 009201
Match_columns 540
No_of_seqs 356 out of 2509
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 21:39:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1232 Proteins containing th 100.0 6E-100 1E-104 750.0 32.9 483 50-533 22-511 (511)
2 PLN02805 D-lactate dehydrogena 100.0 2E-77 4.2E-82 650.5 52.3 449 75-535 91-551 (555)
3 PRK11230 glycolate oxidase sub 100.0 3.1E-74 6.8E-79 622.2 51.7 449 79-535 18-474 (499)
4 TIGR00387 glcD glycolate oxida 100.0 2.7E-69 5.7E-74 574.3 44.7 405 120-531 1-413 (413)
5 COG0277 GlcD FAD/FMN-containin 100.0 5.9E-63 1.3E-67 533.6 45.8 443 86-535 2-458 (459)
6 PRK11183 D-lactate dehydrogena 100.0 1.8E-50 3.9E-55 426.1 33.5 429 80-531 3-551 (564)
7 KOG1231 Proteins containing th 100.0 2.7E-49 5.9E-54 400.4 15.0 437 85-535 29-499 (505)
8 PRK11282 glcE glycolate oxidas 100.0 4.8E-44 1E-48 368.8 27.7 341 128-535 9-351 (352)
9 KOG1233 Alkyl-dihydroxyacetone 100.0 1.7E-43 3.8E-48 350.3 27.7 452 66-533 103-613 (613)
10 PLN02441 cytokinin dehydrogena 100.0 8.2E-41 1.8E-45 359.0 38.3 423 93-533 41-517 (525)
11 TIGR01679 bact_FAD_ox FAD-link 100.0 3.9E-33 8.5E-38 296.8 28.6 195 107-315 2-199 (419)
12 TIGR01678 FAD_lactone_ox sugar 100.0 4.4E-32 9.5E-37 289.2 31.2 197 107-314 5-204 (438)
13 PF02913 FAD-oxidase_C: FAD li 100.0 8.6E-34 1.9E-38 280.2 14.1 238 289-532 1-248 (248)
14 TIGR01677 pln_FAD_oxido plant- 100.0 2.3E-31 5E-36 289.4 25.8 203 104-314 19-234 (557)
15 TIGR01676 GLDHase galactonolac 100.0 1.9E-31 4.1E-36 286.4 22.2 198 107-315 52-252 (541)
16 PLN02465 L-galactono-1,4-lacto 100.0 5E-29 1.1E-33 269.8 34.3 199 106-315 86-287 (573)
17 PF01565 FAD_binding_4: FAD bi 99.9 5.8E-27 1.2E-31 212.4 11.6 136 117-253 1-139 (139)
18 PRK13905 murB UDP-N-acetylenol 99.9 6E-24 1.3E-28 216.6 13.3 171 100-290 17-193 (298)
19 PRK14652 UDP-N-acetylenolpyruv 99.9 2.9E-23 6.4E-28 211.0 15.9 190 79-290 3-196 (302)
20 PRK12436 UDP-N-acetylenolpyruv 99.9 3.2E-23 6.8E-28 211.2 14.3 188 81-289 5-197 (305)
21 PRK13906 murB UDP-N-acetylenol 99.9 1.2E-22 2.6E-27 206.9 16.8 189 80-289 4-197 (307)
22 PRK14653 UDP-N-acetylenolpyruv 99.9 3.7E-21 7.9E-26 194.5 13.9 187 82-290 5-194 (297)
23 TIGR00179 murB UDP-N-acetyleno 99.8 8.7E-21 1.9E-25 191.7 11.7 161 112-288 8-174 (284)
24 KOG4730 D-arabinono-1, 4-lacto 99.8 2.9E-20 6.3E-25 189.7 14.6 178 113-298 46-226 (518)
25 PRK13903 murB UDP-N-acetylenol 99.8 4.2E-20 9.2E-25 191.2 12.7 172 100-290 19-197 (363)
26 PRK14649 UDP-N-acetylenolpyruv 99.8 2.6E-19 5.5E-24 181.7 11.6 172 101-290 8-193 (295)
27 PRK14650 UDP-N-acetylenolpyruv 99.8 2.4E-18 5.3E-23 173.5 11.2 184 90-290 9-195 (302)
28 COG0812 MurB UDP-N-acetylmuram 99.7 6.1E-17 1.3E-21 161.0 14.8 173 101-289 8-183 (291)
29 PRK00046 murB UDP-N-acetylenol 99.7 2.6E-17 5.7E-22 168.5 11.1 173 101-289 8-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.7 5.7E-17 1.2E-21 165.8 11.1 141 94-244 10-156 (354)
31 PRK14651 UDP-N-acetylenolpyruv 99.6 1E-14 2.2E-19 145.4 12.9 161 101-289 8-170 (273)
32 KOG1262 FAD-binding protein DI 99.6 5.7E-15 1.2E-19 148.2 7.9 147 161-312 105-251 (543)
33 PRK13904 murB UDP-N-acetylenol 99.5 2.3E-13 5.1E-18 134.4 9.8 156 100-290 5-160 (257)
34 PF09330 Lact-deh-memb: D-lact 98.8 2.4E-07 5.3E-12 90.6 16.0 218 296-531 2-282 (291)
35 PRK09799 putative oxidoreducta 97.6 0.00014 3.1E-09 72.8 7.5 102 119-222 4-111 (258)
36 TIGR03312 Se_sel_red_FAD proba 97.3 0.0005 1.1E-08 68.8 7.5 101 120-222 4-110 (257)
37 PF00941 FAD_binding_5: FAD bi 96.7 0.00037 8E-09 65.5 -0.1 103 118-222 3-116 (171)
38 TIGR02963 xanthine_xdhA xanthi 96.5 0.0061 1.3E-07 66.3 7.4 105 116-222 191-304 (467)
39 PRK09971 xanthine dehydrogenas 96.4 0.0047 1E-07 63.1 5.3 102 119-222 6-119 (291)
40 TIGR03195 4hydrxCoA_B 4-hydrox 96.2 0.0044 9.5E-08 63.9 3.9 102 119-222 6-118 (321)
41 TIGR03199 pucC xanthine dehydr 96.0 0.0039 8.4E-08 62.8 2.6 97 123-221 1-109 (264)
42 PF09265 Cytokin-bind: Cytokin 95.8 0.046 1E-06 55.1 9.0 113 416-532 141-279 (281)
43 PF08031 BBE: Berberine and be 94.7 0.014 3E-07 42.5 1.1 30 500-530 14-43 (47)
44 PLN02906 xanthine dehydrogenas 94.1 0.08 1.7E-06 64.7 6.4 105 117-222 228-351 (1319)
45 PLN00192 aldehyde oxidase 94.0 0.089 1.9E-06 64.4 6.5 106 117-222 233-353 (1344)
46 TIGR02969 mam_aldehyde_ox alde 93.8 0.1 2.3E-06 63.7 6.5 104 118-222 237-359 (1330)
47 PF04030 ALO: D-arabinono-1,4- 93.7 0.36 7.8E-06 48.2 9.3 109 416-528 125-252 (259)
48 COG1319 CoxM Aerobic-type carb 92.9 0.21 4.6E-06 50.5 6.1 106 117-223 3-119 (284)
49 PLN00107 FAD-dependent oxidore 91.7 0.87 1.9E-05 45.2 8.6 106 417-528 63-195 (257)
50 COG4630 XdhA Xanthine dehydrog 88.3 1.2 2.7E-05 46.2 6.6 128 113-248 199-337 (493)
51 TIGR01676 GLDHase galactonolac 54.3 60 0.0013 36.1 8.9 27 417-443 381-414 (541)
52 TIGR03752 conj_TIGR03752 integ 27.7 70 0.0015 34.7 4.0 50 195-255 278-328 (472)
53 KOG0430 Xanthine dehydrogenase 26.5 1.1E+02 0.0024 36.8 5.6 118 118-242 215-347 (1257)
54 PF14259 RRM_6: RNA recognitio 20.9 2.7E+02 0.0057 20.8 5.3 46 264-313 14-59 (70)
55 PF00076 RRM_1: RNA recognitio 20.4 2.2E+02 0.0048 20.9 4.7 46 264-313 14-59 (70)
No 1
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=6.5e-100 Score=749.96 Aligned_cols=483 Identities=60% Similarity=1.027 Sum_probs=466.8
Q ss_pred cccccccccccccccc-cccccccccccCCCHHHHHHHHHhhCCCceecCHHHHHHhhhhhhhccCCCccEEEecCCHH-
Q 009201 50 GFGNASTIRYRCFGSE-ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN- 127 (540)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~- 127 (540)
++.++.+..+.+++|+ +|.++|+|.|+++++.++..+++|+|++.+.++++++..|++||+.+|+|....|+.|+|++
T Consensus 22 ~~~~~~~~~~~~~~sea~~~v~R~p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~e 101 (511)
T KOG1232|consen 22 RFNAILTRIRTPFTSEAYPLVQRNPNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEE 101 (511)
T ss_pred cchhhhceeecccccccchhhhcCCCcccccHHHHHHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHH
Confidence 3556677888889999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred --HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCccccc
Q 009201 128 --EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLD 205 (540)
Q Consensus 128 --~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~ 205 (540)
+|++||+++++.|+|+||+|++.|+++|..+.||+++.+||+|+++|+..++++|+||+.++++..+|+++|+++|.|
T Consensus 102 VS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlD 181 (511)
T KOG1232|consen 102 VSAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLD 181 (511)
T ss_pred HHHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEE
Q 009201 206 LGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIH 285 (540)
Q Consensus 206 ~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~ 285 (540)
.|+.++|.|||.++|||||.+..|||+.+.+|+++|+|+|+|+++......+|+|+|||+.++|+||||++||||++++-
T Consensus 182 LgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil 261 (511)
T KOG1232|consen 182 LGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSIL 261 (511)
T ss_pred CCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcceeEEEeecCCHHHHHHHHHHHHHHhcCccceeeeeChHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChh
Q 009201 286 TPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEES 365 (540)
Q Consensus 286 l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~ 365 (540)
+.|+|...+..++..++++++.+++.++++.++++++++||||+.++.++..++.+...|++.+ .+||++||+.|++.+
T Consensus 262 ~~~kpksvn~af~gi~sf~~v~k~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~-~pFyiLiETsGSn~d 340 (511)
T KOG1232|consen 262 APPKPKSVNVAFIGIESFDDVQKVFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDE-HPFYILIETSGSNKD 340 (511)
T ss_pred ecCCCcceeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCC-CceEEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999999999999999987788888776 789999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcceeEEecCHHHHHHHHHHHHHHHHHHHhcCCceeeEEeecchhHHHHHHHHHHHHhhcC--
Q 009201 366 YDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGETA-- 443 (540)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~v~~~~~~l~~~~-- 443 (540)
++++++++|++.+.+.+.+.++++++|+.+.+.+|+||+.+++++...|.++++|+++|.+.++++++.+++++...+
T Consensus 341 hD~eKl~afl~d~lek~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~~~l~ 420 (511)
T KOG1232|consen 341 HDEEKLTAFLEDCLEKGLISDGVLAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGEAALV 420 (511)
T ss_pred ccHHHHHHHHHHhhhhcccccceecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998853
Q ss_pred -cEEEEeecCCCceeEeeccCCCChHHHHHHHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHHHHHHHHhHhcC
Q 009201 444 -KVIGYGHLGDGNLHLNISAPRYDDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLD 522 (540)
Q Consensus 444 -~~~~~gH~gdGnlh~~i~~~~~~~~~~~~~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~~~D 522 (540)
++++|||+||||+|+||....++++..+.+++++|||+.+++|+||+|||+|.+|++|+.+..+++.+.+|+.||+.||
T Consensus 421 ~d~~gyGHlGDgNlHLNia~~efn~~iek~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ysKspe~i~lmk~lKn~~D 500 (511)
T KOG1232|consen 421 GDIVGYGHLGDGNLHLNIAVREFNKEIEKLLEPFVYEWVSKHKGSISAEHGIGFLKKPYLHYSKSPEEILLMKDLKNLFD 500 (511)
T ss_pred hcccccccccCCceeEeeeHHHHhHHHHHhhhhHHHHHHHhcCCceeccccccccccCccccCCCHHHHHHHHHHHhhcC
Confidence 6789999999999999999888888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccc
Q 009201 523 PNGILNPYKVL 533 (540)
Q Consensus 523 P~giLNPGk~~ 533 (540)
|+|||||+|.+
T Consensus 501 PngILnPYK~i 511 (511)
T KOG1232|consen 501 PNGILNPYKYI 511 (511)
T ss_pred CcccCCccccC
Confidence 99999999975
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=2e-77 Score=650.49 Aligned_cols=449 Identities=26% Similarity=0.387 Sum_probs=388.3
Q ss_pred ccCCCHHHHHHHHHhhCCCceecCHHHHHHhhhhhhhccC--CCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCC
Q 009201 75 FSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYR--GSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGL 149 (540)
Q Consensus 75 ~~~~~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~--~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~ 149 (540)
+..+.+.++++|+++++. +|.++++.+..|.+||...+. ..|.+|++|+|++ ++|++|+++++||+|+||||++
T Consensus 91 ~~~~~~~~~~~L~~~l~~-~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~ 169 (555)
T PLN02805 91 HKLVPQELIDELKAILQD-NMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSI 169 (555)
T ss_pred cccchHHHHHHHHHhcCC-ceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCC
Confidence 345556788999999995 499999999999999753332 5799999999998 9999999999999999999999
Q ss_pred CCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccc
Q 009201 150 VGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVR 229 (540)
Q Consensus 150 ~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~ 229 (540)
.|++++.++|++|||++||+|+++|+++.+|+||||+++.+|+++|.++|+++|++|++ .+||||++++|++|..+.+
T Consensus 170 ~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~--~~TIGG~ia~n~~G~~s~~ 247 (555)
T PLN02805 170 EGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVR 247 (555)
T ss_pred CCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCcc--ccChhhHhhCCCcccccCc
Confidence 99988767899999999999999999999999999999999999999999999999874 5899999999999999999
Q ss_pred cccccccEeEeEEEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHH
Q 009201 230 YGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKL 309 (540)
Q Consensus 230 yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~ 309 (540)
||.++|+|++++||++||++++++....|++.||||+++++||+|+|||||+++||++|.|+.....++.|++++++.++
T Consensus 248 yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~a 327 (555)
T PLN02805 248 YGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADV 327 (555)
T ss_pred cccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHH
Confidence 99999999999999999999998776678889999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHhcCccceeeeeChHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChhHHHHHHHHHHHHHhhCCCcceeEE
Q 009201 310 LREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVI 389 (540)
Q Consensus 310 ~~~~~~~~~~~~~a~e~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 389 (540)
+.+++. .+..|+++|+||+..++.+..+. . ..++ ..+++++|+.|.+++ ..++.+.+.+.+.+.+. .+..+
T Consensus 328 v~~i~~-~g~~psa~ElmD~~~~~~~~~~~-~--~~~p---~~~~Ll~e~~g~~~~-~~~~~~~~~~i~~~~g~-~~~~~ 398 (555)
T PLN02805 328 AIATML-SGIQVSRVELLDEVQIRAINMAN-G--KNLP---EAPTLMFEFIGTEAY-AREQTLIVQKIASKHNG-SDFVF 398 (555)
T ss_pred HHHHHh-CCCCcEEEEEECHHHHHHHHHhc-C--CCCC---cceEEEEEEecCcHH-HHHHHHHHHHHHHhCCC-ceEEE
Confidence 888653 46789999999998887765542 2 1222 246899999997653 44445555555555543 45678
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHhcCC---ceeeEEeecchhHHHHHHHHHHHHhhcC-cEEEEeecCCCceeEeeccCCC
Q 009201 390 AQDINQASSFWRIREGIAEALMKAGA---VYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLGDGNLHLNISAPRY 465 (540)
Q Consensus 390 ~~~~~~~~~lw~~R~~~~~~~~~~g~---~~~~Dv~vP~~~l~~~v~~~~~~l~~~~-~~~~~gH~gdGnlh~~i~~~~~ 465 (540)
+.++++.+++|+.|+.+..+...... .+.+|++||+++++++++.+++.+.+++ ....|||+||||+|+++.++..
T Consensus 399 a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~gHaGdGnlH~~i~~~~~ 478 (555)
T PLN02805 399 AEEPEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFHTIILFDPS 478 (555)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCcEEEEeccCCC
Confidence 88899999999999988766554322 3678999999999999999999999887 5778999999999999987544
Q ss_pred ChH---HHHHHHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCcccCC
Q 009201 466 DDM---IFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLPH 535 (540)
Q Consensus 466 ~~~---~~~~~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~~~DP~giLNPGk~~~~ 535 (540)
+++ ..+++.+.+++.+.++||++|+|||+|+.|++|+..+++++.+++|++||++|||+|||||||+||+
T Consensus 479 ~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 479 QEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPP 551 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCc
Confidence 333 2355677889999999999999999999999999999999999999999999999999999999974
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=3.1e-74 Score=622.21 Aligned_cols=449 Identities=26% Similarity=0.403 Sum_probs=390.2
Q ss_pred CHHHHHHHHHhhCCCceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCccc
Q 009201 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVP 155 (540)
Q Consensus 79 ~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~ 155 (540)
+.+++++|++++|.++|+++++.+..|++||...+...|.+|++|+|++ ++|++|+++++||++||+||++.|+++|
T Consensus 18 ~~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~ 97 (499)
T PRK11230 18 RTSLLMALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALP 97 (499)
T ss_pred HHHHHHHHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCccc
Confidence 3567899999999999999999999999998777888999999999999 9999999999999999999999999988
Q ss_pred CCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccc
Q 009201 156 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHG 235 (540)
Q Consensus 156 ~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d 235 (540)
..+|++|||++||+|+++|+++++|+||||+++.+|+++|.++|+++|++|++...+||||+|++|++|..+.+||.++|
T Consensus 98 ~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d 177 (499)
T PRK11230 98 LEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVH 177 (499)
T ss_pred CCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhh
Confidence 77899999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cEeEeEEEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHHH
Q 009201 236 NVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 315 (540)
Q Consensus 236 ~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
+|++++||++||++++++... +++.||||+++++||+|+|||||+++||++|.|+.....++.|++++++.+++.++.+
T Consensus 178 ~v~~levVl~~G~i~~~~~~~-~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 178 NLLKVEILTLDGEALTLGSDA-LDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred heeEEEEEcCCCcEEEeCCcc-CCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 999999999999999987653 3567999999999999999999999999999999888888999999999999888753
Q ss_pred HhcCccceeeeeChHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChhHHHHHHHHHHHHHhhCCCcceeEEecCHHH
Q 009201 316 KLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQ 395 (540)
Q Consensus 316 ~~~~~~~a~e~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (540)
.+..|.++|++|+..+..+..+. ....|.+ ..+++++|+.|.+++ +..+++.+.+.+.+.+. .+..++.++++
T Consensus 257 -~~~~p~~~el~d~~~~~~~~~~~-~~~~p~~---~~~~ll~e~~g~~~~-v~~~~~~l~~~~~~~g~-~~~~~a~~~~~ 329 (499)
T PRK11230 257 -AGIIPGGLEMMDNLSIRAAEDFI-HAGYPVD---AEAILLCELDGVESD-VQEDCERVNDILLKAGA-TDVRLAQDEAE 329 (499)
T ss_pred -cCCCcEEEEeeCHHHHHHHHHhc-CCCCCCC---cceEEEEEecCCchH-HHHHHHHHHHHHHhcCC-ceEEEeCCHHH
Confidence 46678999999998887766553 2222322 346899999988644 45566666666655543 34556678888
Q ss_pred HHHHHHHHHHHHHHHHhcC-CceeeEEeecchhHHHHHHHHHHHHhhcC-cEEEEeecCCCceeEeeccCCCChH---HH
Q 009201 396 ASSFWRIREGIAEALMKAG-AVYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLGDGNLHLNISAPRYDDM---IF 470 (540)
Q Consensus 396 ~~~lw~~R~~~~~~~~~~g-~~~~~Dv~vP~~~l~~~v~~~~~~l~~~~-~~~~~gH~gdGnlh~~i~~~~~~~~---~~ 470 (540)
...+|..|+...+.....+ ..+..|++||+++++++++.+++.+.+++ ....+||+||||+|+++..+..+++ ..
T Consensus 330 ~~~~W~~R~~~~~~~~~~~~~~~~~dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~gH~GdGn~H~~i~~~~~~~~~~~~~ 409 (499)
T PRK11230 330 RVRFWAGRKNAFPAVGRISPDYYCMDGTIPRRELPGVLEGIARLSQQYGLRVANVFHAGDGNMHPLILFDANEPGELERA 409 (499)
T ss_pred HHHHHHHHHhhHHHHHhhCCCeeEEeecCChHHHHHHHHHHHHHHHHcCCeEEEEEEeCCCcceeeecCCCCCHHHHHHH
Confidence 8899999987666555433 34568999999999999999999888876 5778999999999999876544332 23
Q ss_pred HHHHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCcccCC
Q 009201 471 AQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLPH 535 (540)
Q Consensus 471 ~~~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~~~DP~giLNPGk~~~~ 535 (540)
..+...+++.+.++||++|+|||+|+.|.+|+..+++++.+++|++||++|||+|||||||+|+.
T Consensus 410 ~~~~~~l~~~~~~~GG~is~EHGiG~~k~~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~~ 474 (499)
T PRK11230 410 EALGGKILELCVEVGGSITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIPT 474 (499)
T ss_pred HHHHHHHHHHHHHcCCeEeeeccCchhhHHHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeCC
Confidence 44566788899999999999999999999999999999999999999999999999999999963
No 4
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=2.7e-69 Score=574.30 Aligned_cols=405 Identities=32% Similarity=0.492 Sum_probs=351.5
Q ss_pred EEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHH
Q 009201 120 LLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLD 196 (540)
Q Consensus 120 vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~ 196 (540)
|++|+|++ ++|++|+++++||+|+|||||+.|++++.+++++|||++||+|+++|+++.+++||||+++.+|+++|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 57899999 999999999999999999999999888877899999999999999999999999999999999999999
Q ss_pred hcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCCCchhhhhhccCCCe
Q 009201 197 DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSL 276 (540)
Q Consensus 197 ~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~l 276 (540)
++|+++|++|++...+||||++++|++|..+.+||.++|+|++++||++||++++++.+..|+.+||||+++++||+|+|
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gtl 160 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTL 160 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccc
Confidence 99999999999998999999999999999999999999999999999999999999887778899999999999999999
Q ss_pred eEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHHHHhcCccceeeeeChHHHHHHHHhhcCCCCCCCCCCcceEEE
Q 009201 277 GIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVL 356 (540)
Q Consensus 277 GIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~~d~~~~~~~~~~~~~~~~p~~~~~~~~~ll 356 (540)
||||+++||++|.|+......+.|++++++.+++.++.+ .+..|+++|++|...+..+..+. ... ++.. ...+++
T Consensus 161 Giit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~p~a~el~d~~~~~~~~~~~-~~~--~p~~-~~~~l~ 235 (413)
T TIGR00387 161 GIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA-AGIIPAGMEFLDNLSIKAVEDIS-GIG--LPKD-AGAILL 235 (413)
T ss_pred eEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh-cCCCcEEEEccCHHHHHHHHHhc-CCC--CCCC-CceEEE
Confidence 999999999999999888888999999999999988754 45679999999998887765542 212 2222 346799
Q ss_pred EEecCCChhHHHHHHHHHHHHHhhCCCcceeEEecCHHHHHHHHHHHHHHHHHHHhcC-CceeeEEeecchhHHHHHHHH
Q 009201 357 IETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKAG-AVYKYDLSLPVEKMYDLVEKM 435 (540)
Q Consensus 357 ie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~~~~g-~~~~~Dv~vP~~~l~~~v~~~ 435 (540)
+++.|..++ .+++++.+.+.+.+.+. .+...+.++++..++|+.|+.....+.... ..+..|+++|+++++++++.+
T Consensus 236 v~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~ 313 (413)
T TIGR00387 236 VEIDGVHEA-VERDEEKIEQICRKNGA-VDVQIAQDEEERALLWAGRRNAFKAASKLSPLYLIEDGTVPRSKLPEALRGI 313 (413)
T ss_pred EEecCCcHH-HHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHHHHHhHHHHHhhCCCcceeEEecCHHHHHHHHHHH
Confidence 999997654 45556666666655443 345566788889999999998776655332 346789999999999999999
Q ss_pred HHHHhhcC-cEEEEeecCCCceeEeeccCCCChHH---HHHHHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHH
Q 009201 436 RQRLGETA-KVIGYGHLGDGNLHLNISAPRYDDMI---FAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTV 511 (540)
Q Consensus 436 ~~~l~~~~-~~~~~gH~gdGnlh~~i~~~~~~~~~---~~~~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~ 511 (540)
++.+.+++ ....|||+|+||+|+++.++..+++. ...+...+++.+.++||++|+|||+|..|++|+.+++++..+
T Consensus 314 ~~~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~r~~~~~~~~~~~~~ 393 (413)
T TIGR00387 314 ADIARKYDFTIANFGHAGDGNLHPTILTDPEDKGEMERVEEAGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKEL 393 (413)
T ss_pred HHHHHHcCCeEEEEEEecCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeccCcHhHHHHHHHhcCHHHH
Confidence 99998887 56689999999999998865444432 234556778889999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCCCCCc
Q 009201 512 QLMSSIKKLLDPNGILNPYK 531 (540)
Q Consensus 512 ~~m~~IK~~~DP~giLNPGk 531 (540)
++|++||++|||+|||||||
T Consensus 394 ~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 394 ETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred HHHHHHHHHcCcCcCCCCcC
Confidence 99999999999999999997
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=5.9e-63 Score=533.61 Aligned_cols=443 Identities=36% Similarity=0.579 Sum_probs=378.1
Q ss_pred HHHhhCCCceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEE
Q 009201 86 FKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVII 162 (540)
Q Consensus 86 l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvI 162 (540)
+.++++...+.+++.....|..||. .+...|.+|+.|+|++ +++++|+++++||+|||+||++.|+++|. ++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gvvl 79 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGVVL 79 (459)
T ss_pred hhHhcCccceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcEEE
Confidence 5677887789999999999999998 7788899999999999 99999999999999999999999999987 79999
Q ss_pred EeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEE
Q 009201 163 NMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEA 242 (540)
Q Consensus 163 dl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~v 242 (540)
||++||+|+++|+++++++||||+++.+|+++|.++|+++|++|++...+||||+|++|++|.++.+||.++|+|+++++
T Consensus 80 ~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~v 159 (459)
T COG0277 80 DLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRV 159 (459)
T ss_pred EchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEE
Confidence 99999999899999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHH---HHhcC
Q 009201 243 VLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK---RKLGE 319 (540)
Q Consensus 243 V~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 319 (540)
|++||++++++.+..|+++||||+++++||+|+|||||+++||+.|.|+...+.+..+++.+.+........ .....
T Consensus 160 V~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
T COG0277 160 VLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGV 239 (459)
T ss_pred EcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCC
Confidence 999999999999988999999999999999999999999999999999999888888898887765433332 12234
Q ss_pred ccceeeeeChHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChhHHHHHHHHHHHHHhhCCCcceeEEecCHHHHHHH
Q 009201 320 ILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSF 399 (540)
Q Consensus 320 ~~~a~e~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (540)
.+.++|+++.. +.....+......+.. .+.++++++.+............+.+.+.+.+...+..+..+..+...+
T Consensus 240 ~~~~~e~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
T COG0277 240 IPAALEFMDRP-IKAAEAYLGGGALPLE---APARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARL 315 (459)
T ss_pred Cceeeeecchh-HHHHHHhccccCCCCC---CceEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHH
Confidence 68899999987 4344343322222322 2267888988876444555666666666555534556677888889999
Q ss_pred HHHHHHHHHHHHhcCC-ceeeEEeecchhHHHHHHHHHHHHhhcC---cEEEEeecCCCceeEeeccCCCCh-H---HHH
Q 009201 400 WRIREGIAEALMKAGA-VYKYDLSLPVEKMYDLVEKMRQRLGETA---KVIGYGHLGDGNLHLNISAPRYDD-M---IFA 471 (540)
Q Consensus 400 w~~R~~~~~~~~~~g~-~~~~Dv~vP~~~l~~~v~~~~~~l~~~~---~~~~~gH~gdGnlh~~i~~~~~~~-~---~~~ 471 (540)
|..|+.........+. .+..|+++|.+.+++++..+.+.+...+ ....++|.+|||+|+.+..+..+. + ...
T Consensus 316 ~~~r~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~ 395 (459)
T COG0277 316 WLARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILALLDKAGLALRVALFGHAGDGNLHLNILYDVGDEAEELARAE 395 (459)
T ss_pred HHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHHHhcCCCceeeeecccCCCcceeeeccCCCccHHHHHHHH
Confidence 9999998877666553 6778999999999999999999888864 578899999999999987654321 2 233
Q ss_pred HHHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCcccCC
Q 009201 472 QIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLPH 535 (540)
Q Consensus 472 ~~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~~~DP~giLNPGk~~~~ 535 (540)
++.+.+.+.+.++||++++|||+|..|.+|+....+ +.+++|+++|++|||+|||||||+++.
T Consensus 396 ~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~-~~~~~~~~~k~~~DP~~i~npg~~~~~ 458 (459)
T COG0277 396 ALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPGKLFRL 458 (459)
T ss_pred HHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHh-HHHHHHHHHHHhcCCCCCCCCCccCCC
Confidence 455667888999999999999999999999999888 899999999999999999999999875
No 6
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-50 Score=426.14 Aligned_cols=429 Identities=19% Similarity=0.270 Sum_probs=343.1
Q ss_pred HHHHHHHHHhhCCCceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccC
Q 009201 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPV 156 (540)
Q Consensus 80 ~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~ 156 (540)
+.++++|++++|+++|+++++.+..|.+||. ...+.|.+||+|.|++ ++|++|+++++||+|||||||++|+++|.
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r-~~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~ 81 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFR-SGQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPN 81 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCcc-ccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccC
Confidence 4678999999999999999999999999985 4678899999999999 99999999999999999999999999986
Q ss_pred CC-----cEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCC-CCcceecccccCCCCCCCcccc
Q 009201 157 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGA-KGSCQIGGNVSTNAGGLRLVRY 230 (540)
Q Consensus 157 ~~-----gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s-~~~~tvGG~ia~na~G~~~~~y 230 (540)
.+ +|+|||++||+|+++| ++.+++|+||+++.+|+++|+++|+.+|.++++ +..|||||+|++|+||....+|
T Consensus 82 ~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRg 160 (564)
T PRK11183 82 GNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRG 160 (564)
T ss_pred CCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEc
Confidence 43 7999999999999999 567899999999999999999999998887744 4567999999999999999999
Q ss_pred ccccccEeEeEEEecCCcE-------EEccCCcc--c---CCCCC----------------------------------c
Q 009201 231 GSLHGNVLGLEAVLANGDV-------IDMLGTLR--K---DNTGY----------------------------------D 264 (540)
Q Consensus 231 G~~~d~V~~~~vV~~~G~v-------~~~~~~~~--k---~~~g~----------------------------------d 264 (540)
|.+.++++. ++|+++|++ ++.+.+.. + ++.|| |
T Consensus 161 ga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaD 239 (564)
T PRK11183 161 PAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNAD 239 (564)
T ss_pred chhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCC
Confidence 999999999 999999999 66555431 2 57888 9
Q ss_pred hhhhh--hccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHHHHhcCccceeeeeChHHHHHHHHhhcCC
Q 009201 265 LKHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGV 342 (540)
Q Consensus 265 L~~~~--~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~~d~~~~~~~~~~~~~~ 342 (540)
+.++| .||+|+|||| +++|+++|.|+...++++.+++.+++.++.+.+...++..|.++||||+.+++.+..|.++.
T Consensus 240 l~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~ygkd~ 318 (564)
T PRK11183 240 PRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAFDIAEKYGKDT 318 (564)
T ss_pred HHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHHHHHHHhCCcc
Confidence 99999 9999999999 99999999999999999999999999999999988889999999999999999988875432
Q ss_pred C----------CC----------------------------------CC----C------CCcceEEEEEecCCChhHHH
Q 009201 343 R----------NP----------------------------------FS----S------SMHNFYVLIETTGSEESYDR 368 (540)
Q Consensus 343 ~----------~p----------------------------------~~----~------~~~~~~llie~~g~~~~~~~ 368 (540)
. .| +| . ..+..++++...+...++..
T Consensus 319 ~~~i~~~gt~~~p~~f~~k~~~d~~~~~~~~~~~~~~d~~~q~~~~~~p~~lp~r~~~~r~~y~hhl~lk~~~~~~~e~~ 398 (564)
T PRK11183 319 FLMIDKLGTDKLPKLFALKGRVDAFLEKVPFLPPHFTDRVMQALSKLFPSHLPKRMKDYRDKYEHHLLLKMSGDGIEEAR 398 (564)
T ss_pred EEehhhhCchhHHHHHhhHHHHHHHHHhcCCCCCCCcHHHHHHHHhhChhhcCHHHHHHHHHhhhheeeeecCccHHHHH
Confidence 0 00 01 0 01234588888777655444
Q ss_pred HHHHHHHHHHhhCCCcceeEEecCHHHHHHHHHHHHHHHHHHHh--------cCCceeeEEeecchhHHHHHHHHHHHHh
Q 009201 369 EKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMK--------AGAVYKYDLSLPVEKMYDLVEKMRQRLG 440 (540)
Q Consensus 369 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~~~--------~g~~~~~Dv~vP~~~l~~~v~~~~~~l~ 440 (540)
+.|+.+.... . ...+.++++|.++..-.|-.+..+.-+ ...+...|+++|...- ++++.+-+.+.
T Consensus 399 ~~l~~~f~~~--~----g~~f~c~~~e~~~a~lhrf~~a~aa~ry~~~~~~~~~~i~~ldial~rn~~-~w~e~lp~~~~ 471 (564)
T PRK11183 399 AYLKEYFKSA--E----GDFFECTPEEGKKAFLHRFAAAGAAIRYRAVHRDEVEDILALDIALRRNDR-DWFEHLPPEID 471 (564)
T ss_pred HHHHHHhhhc--C----CCeEeeCHHHHHHHHHHHHHhhhhHHHHHHhhhccccceeeEEeeecCCcc-chHHhCCHHHh
Confidence 4444444221 1 234678888888877777765543322 1235678999986653 55655554443
Q ss_pred hcC-cEEEEeecCCCceeEeeccCCCChHHHHHHHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHHHHHHHHhH
Q 009201 441 ETA-KVIGYGHLGDGNLHLNISAPRYDDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKK 519 (540)
Q Consensus 441 ~~~-~~~~~gH~gdGnlh~~i~~~~~~~~~~~~~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~ 519 (540)
..- ..+.|||+..-.+|-.++.....+ ..++++.+.+++.+.|+..-+||.+|-.. ..-..|++.-+
T Consensus 472 ~~~~~~~yyghf~chv~hqdyi~kkg~d--~~~~~~~m~~~l~~rga~ypaehnvghly----------~a~~~l~~~y~ 539 (564)
T PRK11183 472 DQLVHKLYYGHFFCHVFHQDYIVKKGVD--VHALKHEMLELLDARGAEYPAEHNVGHLY----------KAKPALKKFYR 539 (564)
T ss_pred hhhhhheeccccceecchhhhhhccCCC--HHHHHHHHHHHHHhcCCcCCcccccCccc----------cCChHHHHHHH
Confidence 321 346789988877887766633221 23567788899999999999999999762 23456778888
Q ss_pred hcCCCCCCCCCc
Q 009201 520 LLDPNGILNPYK 531 (540)
Q Consensus 520 ~~DP~giLNPGk 531 (540)
.+||.|-||||.
T Consensus 540 ~~dptn~~npgi 551 (564)
T PRK11183 540 ELDPTNSFNPGI 551 (564)
T ss_pred hcCCccCCCCcc
Confidence 999999999994
No 7
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=2.7e-49 Score=400.45 Aligned_cols=437 Identities=19% Similarity=0.229 Sum_probs=316.1
Q ss_pred HHHHhhCC---CceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCC--CceEEEEcCCCCCCCCcccC
Q 009201 85 YFKELLGE---KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSR--LLAVVPQGGNTGLVGGSVPV 156 (540)
Q Consensus 85 ~l~~~~g~---~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~--~~~v~~~GgGt~~~g~~~~~ 156 (540)
.+..++|. ..+.+++......++|+...+.-.|.+|+.|+|++ +++|.|+.. .+||.+||+||++.|++.+.
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~ 108 (505)
T KOG1231|consen 29 SLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT 108 (505)
T ss_pred chhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC
Confidence 35555652 34556676677788888888889999999999999 999999999 89999999999999999886
Q ss_pred CCcEEEEeC---CCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCC--cccccCCCCCcceecccccCCCCCCCccccc
Q 009201 157 FDEVIINMG---SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF--IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYG 231 (540)
Q Consensus 157 ~~gvvIdl~---~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl--~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG 231 (540)
.+|++|.|+ .|+++-.+..++..|.|+||..|-+|.+++.++|+ .++.||+ ..||||++++.+.|...+|||
T Consensus 109 ~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl---~ltVGGtlsnagiggqafRyG 185 (505)
T KOG1231|consen 109 RGGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYL---PLTVGGTLSNAGIGGQAFRYG 185 (505)
T ss_pred CCCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCcc---ceeecceeccCccccceeecc
Confidence 789666553 46776667778899999999999999999999999 6677776 479999999999999999999
Q ss_pred cccccEeEeEEEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCC---cceeEEEe-ecCCHHHHH
Q 009201 232 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL---SSVNLAFL-ACKDYFSCQ 307 (540)
Q Consensus 232 ~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p---~~~~~~~~-~~~~~~~~~ 307 (540)
...+||+.++||+++|++++++++ .|++|+.++.||+|+|||||+++++|+|+| +....... .|+..+.+.
T Consensus 186 pqi~NV~~LdVVtgkGeiv~cs~r-----~n~~lf~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~~ 260 (505)
T KOG1231|consen 186 PQISNVIELDVVTGKGEIVTCSKR-----ANSNLFFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGAA 260 (505)
T ss_pred chhhceEEEEEEcCCCcEEecccc-----cCceeeeeeeccCcceeeEEEEEEEeccCCccchHHhhhhhcCCcchhhhh
Confidence 999999999999999999999865 678999999999999999999999999999 44433444 566666554
Q ss_pred HHHHHHHHHhcCccceeeeeChHHHHHHHHhhcCCCCCC------CCCCcceEEEEEecCCChhHHHHHHHHHHHHHhhC
Q 009201 308 KLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPF------SSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEG 381 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~a~e~~d~~~~~~~~~~~~~~~~p~------~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~ 381 (540)
...+.... .+...+.+|..|...+......- ....=+ ... ..-.+..|+.+..+.........+...+.-.
T Consensus 261 ~~~~~gl~-~n~r~s~f~l~D~~~i~~~~~~~-~~~yclev~ky~d~~-e~pti~~e~~~l~~~l~~~~~~~~~~~v~y~ 337 (505)
T KOG1231|consen 261 IVARNGLQ-SNIRVSRFELLDEVQIAAINSDH-STNYCLEVAKYYDLT-EAPTLFQEIGGLSEKLNYAPTFIVEQDVQYH 337 (505)
T ss_pred hhhhcccc-ccceeeccccCcHHHHHHHHhcC-CeeeeeehhhccCcc-cCchHHHHHhccchhhhccchhhhhhhhHHH
Confidence 33322211 12234558888877655543321 111000 000 0112334444432221111111111111100
Q ss_pred CCcce-eEEecCHHHHHHHHHHHHHHHHHHHhcC------CceeeEEeecchhHHHHHHHHHHHHhhcC-cEEEEeecCC
Q 009201 382 GLISD-GVIAQDINQASSFWRIREGIAEALMKAG------AVYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLGD 453 (540)
Q Consensus 382 ~~~~~-~~~~~~~~~~~~lw~~R~~~~~~~~~~g------~~~~~Dv~vP~~~l~~~v~~~~~~l~~~~-~~~~~gH~gd 453 (540)
. +.+ ...+.+......+|+.||.-....-..+ ..+..|+++|.+..+.++..+++.+.-.. ...+.+|+++
T Consensus 338 ~-fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa~gv~~dIl~~~s~g~~liyptnk~~kw~~~~sav~ph~~e 416 (505)
T KOG1231|consen 338 D-FLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFARGVFTDILVPNSSGPVLIYPTNKDLKWSNRLSAVTPHAGE 416 (505)
T ss_pred H-hhhHhhhcccchhhcccccCCCchheeecccccchhhhhhhccceeeccCCCceEEeccccCcchhhhhccccccCCC
Confidence 0 111 2344556677789998886322211112 22457999999999888887776544433 3566799999
Q ss_pred CceeEeeccCCCChHHHHH---HHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCC
Q 009201 454 GNLHLNISAPRYDDMIFAQ---IEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPY 530 (540)
Q Consensus 454 Gnlh~~i~~~~~~~~~~~~---~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~~~DP~giLNPG 530 (540)
|++|+.+++....++.++. ..+.+.+.+.+. |...+|||+|..+++|+..++|+.-.+.|+ +|.+|||+.|||||
T Consensus 417 ~vFy~v~~l~s~~~~~~e~~~~~n~riv~fc~~a-g~~~keyl~~~~~~e~w~~hfG~~w~~f~~-~K~~~DPk~Il~PG 494 (505)
T KOG1231|consen 417 GVFYLVILLRSSGKEEHEELEQLNDRIVKFCLAA-GTCTKEYLPHYGKREYWVEHFGEKWVDFMR-IKKAYDPKRILNPG 494 (505)
T ss_pred ceEEEEEEecCCCchhHHHHHHHHHHHHHHHHHc-CcChhhhcCCcccHHHHHHHhChhHHHHHH-HHhhcCHHHhcCCc
Confidence 9999998887544444444 445677777888 899999999999999999999987778887 99999999999999
Q ss_pred cccCC
Q 009201 531 KVLPH 535 (540)
Q Consensus 531 k~~~~ 535 (540)
+.|+.
T Consensus 495 q~Ifq 499 (505)
T KOG1231|consen 495 QRIFQ 499 (505)
T ss_pred ccccc
Confidence 99973
No 8
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=4.8e-44 Score=368.75 Aligned_cols=341 Identities=20% Similarity=0.261 Sum_probs=246.6
Q ss_pred HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCC
Q 009201 128 EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLG 207 (540)
Q Consensus 128 ~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~ 207 (540)
++|++|+++++||+|+||||+..++. +. ++++|||++||+|+++|+++.+|+|+||+++.+|+++|.++|+.+|.+|.
T Consensus 9 ~~v~~A~~~~~~v~~~GgGt~~~~g~-~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~lp~~p~ 86 (352)
T PRK11282 9 ERVRQAAADGTPLRIRGGGSKDFYGR-AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQMLPFEPP 86 (352)
T ss_pred HHHHHHHHCCCeEEEECCCCCCCCCC-CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCeeCCCCC
Confidence 89999999999999999998644443 32 56899999999999999999999999999999999999999999998876
Q ss_pred CCC-cceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEe
Q 009201 208 AKG-SCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHT 286 (540)
Q Consensus 208 s~~-~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l 286 (540)
... .+||||++++|++|.++.+||.++|+|+++++|++||++++++.++.|+.+||||+++++||+|+|||||+++||+
T Consensus 87 ~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVitevtlkl 166 (352)
T PRK11282 87 HFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVLLEVSLKV 166 (352)
T ss_pred CcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhheEEEEEE
Confidence 544 4899999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred ccCCcceeEEEeecCCHHHHHHHHHHHHHHhcCccceeeeeChHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChhH
Q 009201 287 PPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESY 366 (540)
Q Consensus 287 ~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~ 366 (540)
+|.|+...+..+.++ .+++.+++.++..+ ...+++.++ . + ..+++++.|....
T Consensus 167 ~P~p~~~~t~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~------------~-------~-----~~l~~rl~g~~~~- 219 (352)
T PRK11282 167 LPRPRAELTLRLEMD-AAEALRKLNEWGGQ-PLPISASCW------------D-------G-----GTLYLRLSGAEGA- 219 (352)
T ss_pred EecCceEEEEEEecC-HHHHHHHHHHHhcC-CCCCchhhh------------c-------C-----CeeEEEEeCcHHH-
Confidence 999987766666554 45566665555321 111111111 0 1 1256667676543
Q ss_pred HHHHHHHHHHHHhhCCCcceeEEecCHHHHHHHHH-HHHHHHHHHHhcCCceeeEEeecchhHHHHHHHHHHHHhhcCcE
Q 009201 367 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWR-IREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGETAKV 445 (540)
Q Consensus 367 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~-~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~v~~~~~~l~~~~~~ 445 (540)
++++.+.+.. ... +.++. .+|. +|+....... .+ ....-+++|++..+..+.. ..
T Consensus 220 v~~~~~~~~~-----------~~~-~~~~~-~~W~~~r~~~~~~~~-~~-~~~~ri~~~p~~~~~~~~~---------~~ 275 (352)
T PRK11282 220 VKAARERLGG-----------EEL-DDAEA-AFWQQLREQTLPFFD-DG-RPLWRLSLPSTAPPLDLPG---------EQ 275 (352)
T ss_pred HHHHHHHhcc-----------ccc-Cchhh-hHHHHHHhcccCcCC-CC-CeEEEEEcCCCCccccccc---------ce
Confidence 3333333311 111 12334 7999 4443312211 12 2234599999988766431 11
Q ss_pred EEEeecCCCceeEeeccCCCChHHHHHHHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHHHHHHHHhHhcCCCC
Q 009201 446 IGYGHLGDGNLHLNISAPRYDDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNG 525 (540)
Q Consensus 446 ~~~gH~gdGnlh~~i~~~~~~~~~~~~~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~~~DP~g 525 (540)
+-+.+.|...+. . +. ....+++.+.++||..+-.++....+ +-+.. +++...++|++||++|||++
T Consensus 276 --~~~~~gg~~w~~--~---~~-----~~~~~r~~~~~~gG~~tl~~a~~~~~-~~~~~-~~~~~~~l~~~lK~~fDP~~ 341 (352)
T PRK11282 276 --LIDWGGAQRWLK--S---DA-----DAAAIRAAAAAAGGHATLFRAGDRAG-PVFHP-LPAPLLRIHRRLKQAFDPAG 341 (352)
T ss_pred --EEEcccceEEec--C---cc-----cHHHHHHHHHhcCCEEEEEECCcccc-cCCCC-CCHHHHHHHHHHHHhcCccc
Confidence 123333332221 1 11 11347788899999999877755432 22222 45666999999999999999
Q ss_pred CCCCCcccCC
Q 009201 526 ILNPYKVLPH 535 (540)
Q Consensus 526 iLNPGk~~~~ 535 (540)
|||||+++..
T Consensus 342 ilnpgr~~~~ 351 (352)
T PRK11282 342 IFNPGRLYAE 351 (352)
T ss_pred CCCCCcCCCC
Confidence 9999999753
No 9
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=100.00 E-value=1.7e-43 Score=350.29 Aligned_cols=452 Identities=20% Similarity=0.306 Sum_probs=320.9
Q ss_pred cccccccccccCCCHHHHHHHHHhhCCCceecCHHHHHH----hh-------hhhhhccCCCccEEEecCCHH---HHHH
Q 009201 66 ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLA----AN-------EDWMRKYRGSSKLLLQPRTTN---EILK 131 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~v~~~~~~l~~----~~-------~d~~~~~~~~p~~vv~P~s~~---~iv~ 131 (540)
++++.++..-.-.+.+++..|++ .+|..+.+.... +. .-|-.++...|+.|+-|++.+ ++|+
T Consensus 103 ~s~~p~d~P~~VeNedflh~Lke----t~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~ 178 (613)
T KOG1233|consen 103 LSDVPIDAPRPVENEDFLHFLKE----TKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVE 178 (613)
T ss_pred cccCcccCCCCccchHHHHHHHh----ccCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHH
Confidence 66666666555566677777763 345544433211 11 125567888899999999998 8888
Q ss_pred HhcCCCceEEEEcCCCCCCCCc-ccCCC---cEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCC
Q 009201 132 YCNSRLLAVVPQGGNTGLVGGS-VPVFD---EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLG 207 (540)
Q Consensus 132 ~a~~~~~~v~~~GgGt~~~g~~-~~~~~---gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~ 207 (540)
.|.++++.++|.||||+++++. +|.+. -+-+|++.||+|+++|.++.++++|+|++-++|.+.|.+.|++.+++|.
T Consensus 179 lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPD 258 (613)
T KOG1233|consen 179 LAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPD 258 (613)
T ss_pred HHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCC
Confidence 9999999999999999998764 34322 2568889999999999999999999999999999999999999999999
Q ss_pred CCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEec
Q 009201 208 AKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTP 287 (540)
Q Consensus 208 s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~ 287 (540)
|...+|+||++++.++|+.-..||.+.|.|+.+.+|+|.|.+-+ ....++-++|||+.+.+.||||||||||+++++++
T Consensus 259 S~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek-~Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKir 337 (613)
T KOG1233|consen 259 SIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEK-QCQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIR 337 (613)
T ss_pred ceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhh-hhcCCcccCCCCcceEEeccCcceeEEEEEEEEEe
Confidence 99999999999999999999999999999999999999997654 33445678999999999999999999999999999
Q ss_pred cCCcceeEEEeecCCHHHHHHHHHHHHHHhcCccceeeeeChHHHHHHHHhhcCC-----------CC-------CCCC-
Q 009201 288 PKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGV-----------RN-------PFSS- 348 (540)
Q Consensus 288 p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~~d~~~~~~~~~~~~~~-----------~~-------p~~~- 348 (540)
|.|+......+.|+++++-..+++++..+- -.|+++.+||+..+..-....+.. .. -++.
T Consensus 338 PiPe~~ryGS~aFPNFEqGV~f~REvA~qR-CqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~n 416 (613)
T KOG1233|consen 338 PIPEVKRYGSFAFPNFEQGVNFFREVAIQR-CQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVN 416 (613)
T ss_pred echhhhhcCccccCcHHHHHHHHHHHHHHh-cCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHh
Confidence 999988888899999999999999875432 357889999976432211100000 00 0000
Q ss_pred CCcceEEEEEecCCChhHHHHHHHHHHHHHhhCCCcceeEEecCHHHHHH-----HHHHHHHHHHHHHhcCC-ceeeEEe
Q 009201 349 SMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASS-----FWRIREGIAEALMKAGA-VYKYDLS 422 (540)
Q Consensus 349 ~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lw~~R~~~~~~~~~~g~-~~~~Dv~ 422 (540)
....+.+++| |..++ +++.-+.+.+.+.+.+++..+ .+..++.. +=.+|.-.. ..|. .-.++++
T Consensus 417 qicaATllfE--Gdre~-V~qhE~~~y~iAekF~G~~aG---~~NGqrGY~LTfvIAYiRDlgl----~~gvlgESFETS 486 (613)
T KOG1233|consen 417 QICAATLLFE--GDREE-VDQHEERLYKIAEKFHGVVAG---AENGQRGYRLTFVIAYIRDLGL----NHGVLGESFETS 486 (613)
T ss_pred hhhhhhheec--ccHHH-HHHHHHHHHHHHHHhCCcccc---ccccccceEEEEeHHHHHhhcc----cccchhhccccc
Confidence 0012234444 33222 222223333333222211100 00000000 001222100 0111 1247899
Q ss_pred ecchhHHHHHHHHHHHHhhc----C-c--EEE---EeecC-CC-ceeEeeccCCC---Ch-HHHHHHHHHHHHHHHhcCC
Q 009201 423 LPVEKMYDLVEKMRQRLGET----A-K--VIG---YGHLG-DG-NLHLNISAPRY---DD-MIFAQIEPYVYEWTSEHRG 486 (540)
Q Consensus 423 vP~~~l~~~v~~~~~~l~~~----~-~--~~~---~gH~g-dG-nlh~~i~~~~~---~~-~~~~~~~~~v~~~~~~~gG 486 (540)
+||+++..+.+.+.+++.+. + + ... ..... .| +++|.+-++.. ++ +.+++++.+.++.+.+.||
T Consensus 487 vPWDrv~~LCRnVKer~~rEck~~gv~~~~~s~CRVTQtYDAGACiYFYFgFn~rg~~dplevfe~iE~aARdEIlacGG 566 (613)
T KOG1233|consen 487 VPWDRVLSLCRNVKERMKRECKAQGVTHPVLSNCRVTQTYDAGACIYFYFGFNARGLKDPLEVFERIETAARDEILACGG 566 (613)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeEEEEecCceEEEEEEeeccccCCchHHHHHHHHHHhHHHHHhcCC
Confidence 99999998888777766443 2 0 100 00111 23 66666655432 22 5688899999999999999
Q ss_pred eEEeecCCchhhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCccc
Q 009201 487 SISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVL 533 (540)
Q Consensus 487 sis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~~~DP~giLNPGk~~ 533 (540)
++|++||+|..|++|+....+...+.+++++|+.+||+|||.-++++
T Consensus 567 SlSHHHGVGKiRkqW~~~~~~~vG~~llka~K~~lDP~NIFa~~NLl 613 (613)
T KOG1233|consen 567 SLSHHHGVGKIRKQWMLTTNGAVGIALLKAIKSELDPANIFASANLL 613 (613)
T ss_pred cccccccchHHHHHHHHhhhhhHhHHHHHHHHHhcChhhhccccccC
Confidence 99999999999999999999999999999999999999999877653
No 10
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=8.2e-41 Score=358.96 Aligned_cols=423 Identities=16% Similarity=0.175 Sum_probs=293.9
Q ss_pred CceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhc--CCCceEEEEcCCCCCCCCcccCCCcEEEEeCCC
Q 009201 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCN--SRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSM 167 (540)
Q Consensus 93 ~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~--~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~l 167 (540)
..+.+|+..+..|++||...+...|.+|++|+|++ ++|++|+ +++++|++||+||++.|.+.+ .+|++|||++|
T Consensus 41 ~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivIdms~L 119 (525)
T PLN02441 41 GHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVDMRSL 119 (525)
T ss_pred ceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEECCCC
Confidence 46899999999999999999999999999999999 9999996 679999999999999988765 57999999999
Q ss_pred CC------eEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeE
Q 009201 168 NN------IITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 241 (540)
Q Consensus 168 n~------i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~ 241 (540)
|+ ++++|.+..+|+|+||++|.++.+++.++|+. |..++....+||||++++++.|..+++||.++|+|++++
T Consensus 120 n~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~le 198 (525)
T PLN02441 120 RGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELD 198 (525)
T ss_pred CCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEE
Confidence 99 67899999999999999999999999999987 667777778999999999888888999999999999999
Q ss_pred EEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHHHHhcCcc
Q 009201 242 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEIL 321 (540)
Q Consensus 242 vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
||+++|+++++++. .++|||++++|++|+|||||+++||++|.|+......+.+.+++++.+.+.++.+ ...+
T Consensus 199 VVtadGevv~~s~~-----~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~--~~~~ 271 (525)
T PLN02441 199 VVTGKGEVVTCSPT-----QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLIS--RPPE 271 (525)
T ss_pred EEeCCceEEEeCCC-----CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHh--cCCC
Confidence 99999999999854 3469999999999999999999999999999777778889999999988877754 1223
Q ss_pred ceeeeeChHHHHH----HH----HhhcCCC----CCCCCCCcceEEEEEe----cCCChhHHHHHHHHHHHHHhhCCCcc
Q 009201 322 SAFEFLDNQSMDL----VL----TYLEGVR----NPFSSSMHNFYVLIET----TGSEESYDREKLEAFLLSSMEGGLIS 385 (540)
Q Consensus 322 ~a~e~~d~~~~~~----~~----~~~~~~~----~p~~~~~~~~~llie~----~g~~~~~~~~~l~~~~~~~~~~~~~~ 385 (540)
.++|+++...+-- +. -.+.... ..+... ....-.+|+ ...++..+++..+.+++.+.-...
T Consensus 272 ~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~~~-- 348 (525)
T PLN02441 272 NSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSD-GGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIPG-- 348 (525)
T ss_pred CCcceEeEEEEeCCCCceeeeecccCCccccchhhccccC-CceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCCCC--
Confidence 3455554321100 00 0010000 001111 223333343 333333344555666665532111
Q ss_pred eeEEecCHHHHHHHHHHHHHHHHHHHhcC----CceeeEEeecchhHHHHHHHHHHHHhhc---CcEEEEe----e----
Q 009201 386 DGVIAQDINQASSFWRIREGIAEALMKAG----AVYKYDLSLPVEKMYDLVEKMRQRLGET---AKVIGYG----H---- 450 (540)
Q Consensus 386 ~~~~~~~~~~~~~lw~~R~~~~~~~~~~g----~~~~~Dv~vP~~~l~~~v~~~~~~l~~~---~~~~~~g----H---- 450 (540)
.....|. .+..+-..-+.....++..| +.-+.++.||-+++.++.+.+.+.+-.. |....|- .
T Consensus 349 -~~~~~d~-~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~~~i~~~~~~G~~liyP~~~~~~~~~ 426 (525)
T PLN02441 349 -LLFTTDV-SYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILLDGTNGPILVYPLNRSKWDNR 426 (525)
T ss_pred -Cceeccc-CHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHHhhcccccCCCeEEEEecccccCCCC
Confidence 1122222 22222221111222333333 3457899999999999998877765443 3344441 0
Q ss_pred ----cCCCce-eE-eeccCC--CCh--HHHHHHHHHHHHHHHhcCC--eEEeecCCchhhhhhhhccCCHHHHHHHHHHh
Q 009201 451 ----LGDGNL-HL-NISAPR--YDD--MIFAQIEPYVYEWTSEHRG--SISAEHGLGLMKANKIFYSKSPKTVQLMSSIK 518 (540)
Q Consensus 451 ----~gdGnl-h~-~i~~~~--~~~--~~~~~~~~~v~~~~~~~gG--sis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK 518 (540)
+-++.. ++ .++... ..+ +.+.+-.+.+.+.+.+.|+ .-.-.|- ....+| ...+| ..|+.+.+.|
T Consensus 427 ~s~~~P~~~~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~~~~~~g~~~k~Yl~~~--~~~~~W-~~HfG-~~w~~f~~~K 502 (525)
T PLN02441 427 TSAVIPDEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGIGVKQYLPHY--TTQEEW-KRHFG-PKWETFVRRK 502 (525)
T ss_pred CccccCCCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHHHHcCCceEEcCCCC--CCHHHH-HHHhc-chHHHHHHHH
Confidence 012222 21 122111 111 1222223456777888887 3333332 233444 55677 5799999999
Q ss_pred HhcCCCCCCCCCccc
Q 009201 519 KLLDPNGILNPYKVL 533 (540)
Q Consensus 519 ~~~DP~giLNPGk~~ 533 (540)
+.|||++||.||.-|
T Consensus 503 ~~yDP~~iL~pgq~i 517 (525)
T PLN02441 503 AKFDPLAILSPGQRI 517 (525)
T ss_pred hhCCchhhcCCCCcc
Confidence 999999999999644
No 11
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=3.9e-33 Score=296.83 Aligned_cols=195 Identities=20% Similarity=0.315 Sum_probs=168.2
Q ss_pred hhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEc
Q 009201 107 EDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 183 (540)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~ 183 (540)
++|+..+...|.+|++|+|++ ++|+.|++ ||+++|+||++.+.+. .+|++|||++||+|+++|+++++|+||
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEc
Confidence 468887888999999999999 88888864 7999999999876543 568999999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCCC
Q 009201 184 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 263 (540)
Q Consensus 184 aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~ 263 (540)
||+++.+|.++|.++|+.+|..|+ ...+||||+|+++++|.+ .+||.++|+|+++++|++||+++++++. .++
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~~~~-~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~-----~~~ 149 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLENQGD-IDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEG-----DDQ 149 (419)
T ss_pred CCCCHHHHHHHHHHcCCccccCCC-CCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCC-----CCH
Confidence 999999999999999999886444 456899999999999974 6999999999999999999999998754 357
Q ss_pred chhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHHH
Q 009201 264 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 315 (540)
Q Consensus 264 dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
||+++++||+|+|||||++|||++|.+...... ...+++++.+.+.++..
T Consensus 150 dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 150 DMYLAARVSLGALGVISQVTLQTVALFRLRRRD--WRRPLAQTLERLDEFVD 199 (419)
T ss_pred HHHHHHHhCCCceEEEEEEEEEeecceEeEEEE--EecCHHHHHHHHHHHHh
Confidence 999999999999999999999999988654433 23566777777766543
No 12
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=4.4e-32 Score=289.24 Aligned_cols=197 Identities=25% Similarity=0.378 Sum_probs=175.3
Q ss_pred hhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEc
Q 009201 107 EDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 183 (540)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~ 183 (540)
++|+..+...|.+|+.|+|++ ++|++|+++++||+++|+||++++.++ .+|++|||++||+|+++|+++++|+|+
T Consensus 5 ~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 5 QNWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred EeCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 578888889999999999999 999999999999999999999876544 578999999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCCC
Q 009201 184 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 263 (540)
Q Consensus 184 aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~ 263 (540)
||+++.+|.++|.++|+.+|. +++.+.+||||+++++++|. +.+||.++|+|+++++|++||++++++++ ..+
T Consensus 83 aG~~l~~L~~~L~~~Gl~l~~-~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~-----~~~ 155 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYSMSN-LGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEE-----RNA 155 (438)
T ss_pred CCCCHHHHHHHHHHcCCEecC-CCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCC-----CCh
Confidence 999999999999999999874 56777799999999999997 68999999999999999999999998754 346
Q ss_pred chhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHH
Q 009201 264 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 314 (540)
Q Consensus 264 dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
||+++.+|++|+|||||++|||+.|.+..... ....+++++++.+.+..
T Consensus 156 dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 156 DVFQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHW 204 (438)
T ss_pred hHHHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHh
Confidence 99999999999999999999999998765543 34578888888776654
No 13
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=100.00 E-value=8.6e-34 Score=280.25 Aligned_cols=238 Identities=32% Similarity=0.426 Sum_probs=188.6
Q ss_pred CCcceeEEEeecCCHHHHHHHHHHHHHHhcCccceeeeeChHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChhHHH
Q 009201 289 KLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDR 368 (540)
Q Consensus 289 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~ 368 (540)
+|+...+.++.|++++++.+++.++.+. +..|+++|++|..+++.+..+... +.+.. ..+++++|+.|.+++.+.
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~-g~~p~a~el~d~~~~~~~~~~~~~---~~~~~-~~~~llv~~~g~~~~~~~ 75 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQS-GIIPSAIELLDSAALKLALEHWGE---PLPPE-GGAVLLVEFEGSDEEAVE 75 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHH-CSSCCECCCCHHHHHHHHHHSEEE---TSSTT-TSEEEEEECCCHHHCCHH
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHc-CCCceEEeeeCHHHHHHHHhhcCC---CccCC-cccEEEEEECCCcHHHHH
Confidence 4778888999999999999999888765 788999999999999888776422 22222 567899999998766666
Q ss_pred HHHH-HHHHHHhhCCCcceeEEecCHHHHHHHHHHHHHHHHHH-----HhcCCceeeEEeecchhHHHHHHHHHHHHhhc
Q 009201 369 EKLE-AFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEAL-----MKAGAVYKYDLSLPVEKMYDLVEKMRQRLGET 442 (540)
Q Consensus 369 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~-----~~~g~~~~~Dv~vP~~~l~~~v~~~~~~l~~~ 442 (540)
++++ .+.+.+...+ ..+..++.+.++...+|+.|+.+.+.+ ......+..|+++|+++++++++.+++.++++
T Consensus 76 ~~~~~~i~~~~~~~~-~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~~~ 154 (248)
T PF02913_consen 76 EQLEAEIEEICKKYG-GEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLREY 154 (248)
T ss_dssp HHHHHHHHHHHCTCT-CCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcC-CceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhhhc
Confidence 6666 5555554433 344577788888889999999987622 22223568999999999999999999999998
Q ss_pred C-cEEEEeecCCCceeEeeccCCCChHHHH---HHHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHHHHHHHHh
Q 009201 443 A-KVIGYGHLGDGNLHLNISAPRYDDMIFA---QIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIK 518 (540)
Q Consensus 443 ~-~~~~~gH~gdGnlh~~i~~~~~~~~~~~---~~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK 518 (540)
+ ....|||+||||+|+++.++..+++..+ ++...+++.+.++||++|+|||+|..|.+|+.++++++.+++|++||
T Consensus 155 ~~~~~~~gH~~~g~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~k~~~~~~~~~~~~~~~~~~iK 234 (248)
T PF02913_consen 155 GLEVCHFGHAGDGNLHLYILFDPRDPEEPERAEALWDELYELVLELGGSISAEHGIGKLKKPYLEEEYGPAALRLMRAIK 234 (248)
T ss_dssp TEEEEEEEEEEECEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHTT-BBSSSSGGGHHHHHHHCHHCHHHHHHHHHHHH
T ss_pred cccccceEEccCCeEEEEeecccchHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhHHHHHHhcchHHHHHHHHhh
Confidence 7 5778999999999999987655554433 34455677799999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCcc
Q 009201 519 KLLDPNGILNPYKV 532 (540)
Q Consensus 519 ~~~DP~giLNPGk~ 532 (540)
++|||+|||||||+
T Consensus 235 ~~~DP~~ilNPGki 248 (248)
T PF02913_consen 235 QAFDPNGILNPGKI 248 (248)
T ss_dssp HHH-TTS-BSTTG-
T ss_pred hccCCccCCCCCCC
Confidence 99999999999996
No 14
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=2.3e-31 Score=289.40 Aligned_cols=203 Identities=15% Similarity=0.175 Sum_probs=173.5
Q ss_pred HhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEc-CCCCCCCCcccC--CCcEEEEeCCCCCeEEeeCCC
Q 009201 104 AANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQG-GNTGLVGGSVPV--FDEVIINMGSMNNIITFDKGS 177 (540)
Q Consensus 104 ~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~G-gGt~~~g~~~~~--~~gvvIdl~~ln~i~~id~~~ 177 (540)
.+.++|+..+...|.+|++|+|++ ++|++|+++++||+++| +||++.+.+.+. ++|++|||++||+|+++|.++
T Consensus 19 ~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~ 98 (557)
T TIGR01677 19 NAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATA 98 (557)
T ss_pred cchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCC
Confidence 466899999999999999999999 99999999999999995 588877654442 246999999999988999999
Q ss_pred cEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCcc-ccccccccEeEeEEEecCC------cEE
Q 009201 178 GVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLV-RYGSLHGNVLGLEAVLANG------DVI 250 (540)
Q Consensus 178 ~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~-~yG~~~d~V~~~~vV~~~G------~v~ 250 (540)
++|+|+||+++.+|.+.|.++|+.+|..|. ....||||++++|++|.+.. +||.++|+|+++++|++|| +++
T Consensus 99 ~tVtV~AG~~l~~L~~~L~~~Glal~~~~~-~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~ 177 (557)
T TIGR01677 99 MTVTVESGMSLRELIVEAEKAGLALPYAPY-WWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVR 177 (557)
T ss_pred CEEEECCCCcHHHHHHHHHHcCCEeccCCC-CCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEE
Confidence 999999999999999999999999987654 34579999999999998764 8899999999999999999 788
Q ss_pred EccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHH
Q 009201 251 DMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 314 (540)
Q Consensus 251 ~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
+++.. .++||+++++||+|+|||||++|||++|.+... ..+.+...+.+.+.+.++.
T Consensus 178 ~~s~~-----~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~--~~~~~~~~~~l~~~~~~~~ 234 (557)
T TIGR01677 178 ILSEG-----DTPNEFNAAKVSLGVLGVISQVTLALQPMFKRS--VTYTMRDDSDFEDQFVTFG 234 (557)
T ss_pred EeCCC-----CCHHHHHhhccCCCccEeeeEEEEEEEccccce--EEEEcCCHHHHHHHHHHhh
Confidence 77643 346999999999999999999999999988632 3455677777777665553
No 15
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.98 E-value=1.9e-31 Score=286.40 Aligned_cols=198 Identities=18% Similarity=0.308 Sum_probs=177.3
Q ss_pred hhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEc
Q 009201 107 EDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 183 (540)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~ 183 (540)
++|++.+...|..+++|+|++ ++|+.|++++.+|+|+|+|||+++.+.+ ++++|||++||+|+++|+++++|+|+
T Consensus 52 ~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 52 SNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred cccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 689998999999999999999 9999999999999999999999887664 45689999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCCC
Q 009201 184 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 263 (540)
Q Consensus 184 aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~ 263 (540)
||+++.+|.+.|.++|+.+| ++++...+||||+|++|+||.+ .+||.++|+|+++++|+++|+++++++. ..+
T Consensus 130 AG~~l~~L~~~L~~~Glal~-n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~-----~~p 202 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQ-NFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKD-----KDP 202 (541)
T ss_pred CCCCHHHHHHHHHHcCCEec-cCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCC-----CCH
Confidence 99999999999999999987 5677888999999999999985 5899999999999999999999998754 246
Q ss_pred chhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHHH
Q 009201 264 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 315 (540)
Q Consensus 264 dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
||+++++||+|+|||||++|||++|.+........ .+++++++-+.++.+
T Consensus 203 dLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~--~~~~e~l~~~~~~~~ 252 (541)
T TIGR01676 203 ELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFI--SNMKDIKKNHKKFLA 252 (541)
T ss_pred HHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEe--cCHHHHHHHHHHHHh
Confidence 99999999999999999999999999876554332 678888888777644
No 16
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.97 E-value=5e-29 Score=269.78 Aligned_cols=199 Identities=20% Similarity=0.301 Sum_probs=172.6
Q ss_pred hhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEE
Q 009201 106 NEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVC 182 (540)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v 182 (540)
.++|+......|.+++.|+|++ ++|++|+++++||+++|+||+..+... .++.+|||++||+|+++|+++++|+|
T Consensus 86 ~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~--td~glIdL~~l~~Il~vD~e~~~VtV 163 (573)
T PLN02465 86 VSNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAF--SREGMVNLALMDKVLEVDKEKKRVTV 163 (573)
T ss_pred ccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeee--CCCEEEECcCCCCcEEEeCCCCEEEE
Confidence 4689988999999999999999 999999999999999999999876554 34567999999999999999999999
Q ss_pred cCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCC
Q 009201 183 EAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTG 262 (540)
Q Consensus 183 ~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g 262 (540)
+||+++.+|.+.|.++|+.++. .++...+||||+|+++++|.+ .++|.++|+|+++++|+++|++++++.+ ..
T Consensus 164 ~AG~~l~~L~~~L~~~GLal~n-~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~-----~~ 236 (573)
T PLN02465 164 QAGARVQQVVEALRPHGLTLQN-YASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKE-----DD 236 (573)
T ss_pred ccCCCHHHHHHHHHHcCCEecc-CCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCC-----CC
Confidence 9999999999999999999874 556668899999999999985 5899999999999999999999998754 23
Q ss_pred CchhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHHHH
Q 009201 263 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 315 (540)
Q Consensus 263 ~dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
+||+++.+++.|+|||||++||++.|.+......+. .+++++.+.+.++.+
T Consensus 237 pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~~~--~~~~~~~~~~~~~~~ 287 (573)
T PLN02465 237 PELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTFV--SNRKEIKKNHKKWLS 287 (573)
T ss_pred HHHHhHhhccCCCCcEEEEEEEEEEecCceEEEEEE--ecHHHHHHHHHHHHH
Confidence 699999999999999999999999999865443322 456777777766543
No 17
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=5.8e-27 Score=212.43 Aligned_cols=136 Identities=29% Similarity=0.518 Sum_probs=127.7
Q ss_pred ccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHH
Q 009201 117 SKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 193 (540)
Q Consensus 117 p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~ 193 (540)
|.+|++|+|++ +++++|+++++|++++|+||++.+.+. ..++++|||++||+|+++|+++++++|+||++|.||++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999 999999999999999999999996654 36799999999999889999999999999999999999
Q ss_pred HHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEcc
Q 009201 194 FLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDML 253 (540)
Q Consensus 194 ~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~ 253 (540)
+|.++|+.+|+++++...+|+||++++|++|..+.+||.++|+|+++++|++||++++++
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred ccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999988898889999999999999999999999999999999999999999864
No 18
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=6e-24 Score=216.63 Aligned_cols=171 Identities=22% Similarity=0.297 Sum_probs=143.1
Q ss_pred HHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCC-CCCeEEeeC
Q 009201 100 DVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFDK 175 (540)
Q Consensus 100 ~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~-ln~i~~id~ 175 (540)
.+|..|++ .++++.|++++.|+|++ +++++|+++++|++++|+|||+.....+ .+|++||+++ |+.| ++
T Consensus 17 ~~l~~~~t---~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i-~~-- 89 (298)
T PRK13905 17 EPLARYTS---FRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI-EV-- 89 (298)
T ss_pred CCccccce---eecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE-Ee--
Confidence 45666663 37789999999999998 9999999999999999999998643322 2489999998 9987 44
Q ss_pred CCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCC
Q 009201 176 GSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGT 255 (540)
Q Consensus 176 ~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~ 255 (540)
++.+++|+||++|.+|.++|.++|+. +.++.+..++||||++++|+|+++ |.++|+|+++++|++||++++.+++
T Consensus 90 ~~~~v~v~aG~~~~~L~~~l~~~Gl~-gle~~~gipGTVGGai~~NaG~~G----~~~~d~v~~v~vv~~~G~~~~~~~~ 164 (298)
T PRK13905 90 EGNRITAGAGAPLIKLARFAAEAGLS-GLEFAAGIPGTVGGAVFMNAGAYG----GETADVLESVEVLDRDGEIKTLSNE 164 (298)
T ss_pred cCCEEEEECCCcHHHHHHHHHHcCCC-cchhccCCCcchhHHHHHcCCcCc----eEhheeEEEEEEEeCCCCEEEEEHH
Confidence 45789999999999999999999995 445555567799999999998854 5899999999999999999987643
Q ss_pred cccCCCCCchhhhhhccCCC--eeEEEEEEEEeccCC
Q 009201 256 LRKDNTGYDLKHLFIGSEGS--LGIVTKVSIHTPPKL 290 (540)
Q Consensus 256 ~~k~~~g~dL~~~~~Gs~G~--lGIIt~~~l~l~p~p 290 (540)
|+++.+++|.+. +||||+++||+.|..
T Consensus 165 --------e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 165 --------ELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred --------HcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 777888877654 799999999999964
No 19
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.90 E-value=2.9e-23 Score=210.98 Aligned_cols=190 Identities=19% Similarity=0.293 Sum_probs=153.5
Q ss_pred CHHHHHHHHHhhCCCceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCccc
Q 009201 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVP 155 (540)
Q Consensus 79 ~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~ 155 (540)
+.+.+++|++.++.. +.. .+++..|++ .++++.|++++.|+|++ +++++|+++++|++++|||||+....-.
T Consensus 3 ~~~~~~~~~~~~~~~-~~~-~~~l~~~tt---~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g 77 (302)
T PRK14652 3 EATWRDEIARRVRGE-VLR-DAPLAPRTA---VRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAG 77 (302)
T ss_pred hHHHHHHHHHhhccc-ccc-CCCcccccE---eecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCC
Confidence 345678888888754 443 356777773 47899999999999999 9999999999999999999998522211
Q ss_pred CCCcEEEEeCC-CCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCcccccccc
Q 009201 156 VFDEVIINMGS-MNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLH 234 (540)
Q Consensus 156 ~~~gvvIdl~~-ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~ 234 (540)
.+|++|++++ ++.+ +. ++.+++|+||+.|.+|.+++.++|+. +.++.+..++||||+++||+|.+ ||.++
T Consensus 78 -~~gvVI~l~~~~~~i-~~--~~~~v~v~AG~~~~~L~~~~~~~GL~-GlE~l~gIPGTvGGav~mNaGa~----ggei~ 148 (302)
T PRK14652 78 -VRGVVLRLPQDFPGE-ST--DGGRLVLGAGAPISRLPARAHAHGLV-GMEFLAGIPGTLGGAVAMNAGTK----LGEMK 148 (302)
T ss_pred -EeeEEEEecCCcceE-Ee--cCCEEEEECCCcHHHHHHHHHHcCCc-ccccccCCCcchhHHHHHcCCCC----ceEhh
Confidence 1279999977 4544 33 35689999999999999999999998 78888888899999999999754 69999
Q ss_pred ccEeEeEEEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCC
Q 009201 235 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 290 (540)
Q Consensus 235 d~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p 290 (540)
|+|.++++|+++| ..+.. ++..+|++.+.+.++ + ||||+++|++.|..
T Consensus 149 d~v~~v~vv~~~G-~~~~~----~~e~~f~YR~s~~~~-~--~II~~a~~~L~~~~ 196 (302)
T PRK14652 149 DVVTAVELATADG-AGFVP----AAALGYAYRTCRLPP-G--AVITRVEVRLRPGD 196 (302)
T ss_pred heEEEEEEECCCC-cEEee----hhhcCcccceeccCC-C--eEEEEEEEEEecCC
Confidence 9999999999999 44433 356778888777664 3 89999999999954
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.90 E-value=3.2e-23 Score=211.20 Aligned_cols=188 Identities=17% Similarity=0.279 Sum_probs=153.1
Q ss_pred HHHHHHHHhhCCCceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCC
Q 009201 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVF 157 (540)
Q Consensus 81 ~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~ 157 (540)
+.+++|+++++...+..+ +.+..|+++ ++++.|+++++|.|++ +++++|+++++|++++|||||+....-. .
T Consensus 5 ~~~~~l~~~l~~~~~~~~-~~l~~~tt~---~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g-~ 79 (305)
T PRK12436 5 EVYEYLSTVLPEGHVKQD-EMLKNHTHI---KVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGG-I 79 (305)
T ss_pred HHHHHHHHhcCcCceecC-CcchhccCc---ccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCC-e
Confidence 346778888876556655 478888765 5789999999999999 9999999999999999999999632211 1
Q ss_pred CcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccE
Q 009201 158 DEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNV 237 (540)
Q Consensus 158 ~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V 237 (540)
+|++|++++|+++ +++ +.+++|+||+.|.+|.+++.++|+. +.++.+..++||||++.||+|+++ +.+.|.+
T Consensus 80 ~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~-Gle~~~giPGtVGGav~~NAGayG----~~~~dvl 151 (305)
T PRK12436 80 RGITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLT-GLEFACGIPGSVGGALYMNAGAYG----GEISFVL 151 (305)
T ss_pred eEEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCc-cchhhcCCccchhHHHHhcCccch----hehheee
Confidence 3899999889987 665 4589999999999999999999997 666666678899999999999864 4788999
Q ss_pred eEeEEEecCCcEEEccCCcccCCCCCchhhhhhcc--CCCeeEEEEEEEEeccC
Q 009201 238 LGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGS--EGSLGIVTKVSIHTPPK 289 (540)
Q Consensus 238 ~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs--~G~lGIIt~~~l~l~p~ 289 (540)
.+++++++||++++.+++ ++.+.++.| .....||++++|++.|.
T Consensus 152 ~~v~vv~~~G~v~~~~~~--------e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 152 TEAVVMTGDGELRTLTKE--------AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred eEEEEEeCCCCEEEEEHH--------HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 999999999999998765 455555555 22347999999999874
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.89 E-value=1.2e-22 Score=206.95 Aligned_cols=189 Identities=16% Similarity=0.269 Sum_probs=152.6
Q ss_pred HHHHHHHHHhhCCCceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccC
Q 009201 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPV 156 (540)
Q Consensus 80 ~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~ 156 (540)
..++++|+++++...+..+ +++..|++. +.++.|++++.|+|++ +++++|+++++|++++|+|||+....-.
T Consensus 4 ~~~~~~l~~~~~~~~v~~~-~~L~~~tt~---~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g- 78 (307)
T PRK13906 4 KDIYQALQQLIPNEKIKVD-EPLKRYTYT---KTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGG- 78 (307)
T ss_pred HHHHHHHHHhcCCCeeecC-CccccceEc---CcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCC-
Confidence 4577889999876567766 678888865 5678999999999999 9999999999999999999999633211
Q ss_pred CCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCcccccccccc
Q 009201 157 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGN 236 (540)
Q Consensus 157 ~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~ 236 (540)
.+|++|++++|+++ +++. .+++|+||+.|.+|.+++.++|+. +.+..+..++||||++.||+|+++ |.++|+
T Consensus 79 ~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~-GlE~~~gIPGtVGGav~mNaGayG----g~i~D~ 150 (307)
T PRK13906 79 IRGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALT-GLEFACGIPGSIGGAVYMNAGAYG----GEVKDC 150 (307)
T ss_pred cceEEEEecCccce-EEeC--CEEEEECCCcHHHHHHHHHHcCCc-cchhhcCCCccHhHHHHhhCCcch----hhhhhh
Confidence 24899999889998 5653 589999999999999999999997 555556677899999999999865 799999
Q ss_pred EeEeEEEecCCcEEEccCCcccCCCCCchhhhhhccC--CCeeEEEEEEEEeccC
Q 009201 237 VLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE--GSLGIVTKVSIHTPPK 289 (540)
Q Consensus 237 V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~--G~lGIIt~~~l~l~p~ 289 (540)
|+++++|+++|++++.+++ |+.+.++.|. ..--||++++|++.|.
T Consensus 151 l~~v~vv~~~G~~~~~~~~--------e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 151 IDYALCVNEQGSLIKLTTK--------ELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred eeEEEEEeCCCCEEEEEHH--------HccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 9999999999999998765 2222223221 1125899999999873
No 22
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=3.7e-21 Score=194.55 Aligned_cols=187 Identities=19% Similarity=0.270 Sum_probs=154.2
Q ss_pred HHHHHHHhhCCCceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCC
Q 009201 82 DVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFD 158 (540)
Q Consensus 82 ~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~ 158 (540)
+++.|.+..+ .+. ..+++..|++ .+++|.+++++.|+|++ +++++|++ ++|+.+.|+|||+.....+. +
T Consensus 5 ~~~~~~~~~~--~~~-~~~~L~~~tt---~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~-~ 76 (297)
T PRK14653 5 IIETLLKYGN--DVF-INEEMKCHVS---FKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPM-D 76 (297)
T ss_pred HHHHHHHhcC--eec-cCCcccccCE---eeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCc-c
Confidence 4566665555 244 3456777773 48899999999999999 88999999 99999999999998776553 4
Q ss_pred cEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEe
Q 009201 159 EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL 238 (540)
Q Consensus 159 gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~ 238 (540)
|++|++++|+.+ +++. ..++|+||+.|.+|..++.++|+. +.+.-+..++||||++.||+|+++ +.++|+|.
T Consensus 77 gvVI~l~~~~~i-~i~~--~~v~v~AG~~l~~L~~~~~~~GL~-GlE~l~gIPGTVGGAv~mNAGayG----~ei~d~l~ 148 (297)
T PRK14653 77 FVVVSTERLDDI-FVDN--DKIICESGLSLKKLCLVAAKNGLS-GFENAYGIPGSVGGAVYMNAGAYG----WETAENIV 148 (297)
T ss_pred EEEEEeCCcCce-EEeC--CEEEEeCCCcHHHHHHHHHHCCCc-chhhhcCCchhHHHHHHHhCccCc----hhhheeEE
Confidence 899999789998 6763 579999999999999999999997 566666667889999999999964 45999999
Q ss_pred EeEEEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCC
Q 009201 239 GLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 290 (540)
Q Consensus 239 ~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p 290 (540)
++++++ +|++++.+. ...+|++.+...++++.+ ||++++|++.|.+
T Consensus 149 ~V~~~d-~g~v~~~~~----~e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 149 EVVAYD-GKKIIRLGK----NEIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred EEEEEC-CCEEEEEch----hhccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 999999 788887764 467788888888777666 9999999998853
No 23
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.84 E-value=8.7e-21 Score=191.72 Aligned_cols=161 Identities=20% Similarity=0.229 Sum_probs=130.7
Q ss_pred ccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccH
Q 009201 112 KYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCIL 188 (540)
Q Consensus 112 ~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~ 188 (540)
++++.|+++++|+|++ +++++|+++++|++++|||||+...+.. .++++|++++|+++ .+++ +.+++|+||+.|
T Consensus 8 ~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~-~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~~~ 84 (284)
T TIGR00179 8 KIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDG-RGGVIINLGKGIDI-EDDE-GEYVHVGGGENW 84 (284)
T ss_pred ecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCC-cCeEEEECCCCceE-EEec-CCEEEEEcCCcH
Confidence 6789999999999999 9999999999999999999999865533 46899999999987 4566 568999999999
Q ss_pred HHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCCCchhhh
Q 009201 189 ENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHL 268 (540)
Q Consensus 189 ~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~ 268 (540)
.+|.+++.++|+. +.++.+..++||||+++||+|+++ ..+.|.|+++++|++||++++.+.+ |+.+.
T Consensus 85 ~~l~~~~~~~Gl~-GlE~l~giPGtvGGai~mNAGayG----~~i~d~l~~v~vv~~~G~~~~~~~~--------~~~f~ 151 (284)
T TIGR00179 85 HKLVKYALKNGLS-GLEFLAGIPGTVGGAVIMNAGAYG----VEISEVLVYATILLATGKTEWLTNE--------QLGFG 151 (284)
T ss_pred HHHHHHHHHCCCc-ccccCCCCCchHHHHHHHhcccch----hehhheEEEEEEEeCCCCEEEEEHH--------Hcccc
Confidence 9999999999995 445555566689999999999964 4567789999999999999988754 22222
Q ss_pred hhccC--CC-eeEEEEEEEEecc
Q 009201 269 FIGSE--GS-LGIVTKVSIHTPP 288 (540)
Q Consensus 269 ~~Gs~--G~-lGIIt~~~l~l~p 288 (540)
++.|. .. ..||++++|++.+
T Consensus 152 YR~S~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 152 YRTSIFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCccccCCCCcEEEEEEEEEecc
Confidence 22221 11 3699999999844
No 24
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.84 E-value=2.9e-20 Score=189.73 Aligned_cols=178 Identities=19% Similarity=0.211 Sum_probs=146.3
Q ss_pred cCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHH
Q 009201 113 YRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILE 189 (540)
Q Consensus 113 ~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~ 189 (540)
....+.-|-+|+|++ ++|+.|++++..+++.|.||+..+-.+ .+|.+|++.+||+++++|++..+||||+|+++.
T Consensus 46 ~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~c--tdg~lisl~~lnkVv~~dpe~~tvTV~aGirlr 123 (518)
T KOG4730|consen 46 STCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVC--TDGLLISLDKLNKVVEFDPELKTVTVQAGIRLR 123 (518)
T ss_pred hhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCccee--ccccEEEhhhhccceeeCchhceEEeccCcCHH
Confidence 334456688899998 999999999999999999999877544 567999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccCCCCCchhhhh
Q 009201 190 NLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLF 269 (540)
Q Consensus 190 ~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~~~g~dL~~~~ 269 (540)
||.+++++.|+.+|.. ++....||||++++++||.+..-++.......-+.+..++|.++.++++ ..+++|++.
T Consensus 124 QLie~~~~~GlsL~~~-~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-----~dpe~F~AA 197 (518)
T KOG4730|consen 124 QLIEELAKLGLSLPNA-PSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-----KDPELFNAA 197 (518)
T ss_pred HHHHHHHhcCccccCC-CceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEeccc-----CCHHHHhhh
Confidence 9999999999999964 4555679999999999998533234334444444444578998888755 346999999
Q ss_pred hccCCCeeEEEEEEEEeccCCcceeEEEe
Q 009201 270 IGSEGSLGIVTKVSIHTPPKLSSVNLAFL 298 (540)
Q Consensus 270 ~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~ 298 (540)
.-|.|.||||.++||+++|.-+......+
T Consensus 198 kvSLG~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 198 KVSLGVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred hhcccceeEEEEEEEEEEecceeeeEEEE
Confidence 99999999999999999998765444433
No 25
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=4.2e-20 Score=191.19 Aligned_cols=172 Identities=18% Similarity=0.242 Sum_probs=144.8
Q ss_pred HHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCC
Q 009201 100 DVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 176 (540)
Q Consensus 100 ~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~ 176 (540)
.+|..|++ .++++.|++++.|+|++ +++++|+++++|+.++|+|||+.-..-. .+|++|+++ ++.+ +++++
T Consensus 19 ~~L~~~tt---~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g-~~GvVI~l~-~~~i-~i~~~ 92 (363)
T PRK13903 19 VPLAPLTT---LRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDG-FDGTVVRVA-TRGV-TVDCG 92 (363)
T ss_pred CCcccccE---eecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCC-ccEEEEEeC-CCcE-EEeCC
Confidence 35666763 47899999999999999 8999999999999999999998532211 237999997 5887 67766
Q ss_pred CcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecC-CcEEEccCC
Q 009201 177 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLAN-GDVIDMLGT 255 (540)
Q Consensus 177 ~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~-G~v~~~~~~ 255 (540)
+.+|+|+||+.|.+|.+++.++|+. +++..+..++||||++.||+|+++ ..+.|.|.++++++.+ |++++...+
T Consensus 93 ~~~v~vgAG~~~~~l~~~a~~~GL~-GlE~laGIPGTVGGAv~mNaGayG----~ei~D~l~sV~vvd~~~G~~~~~~~~ 167 (363)
T PRK13903 93 GGLVRAEAGAVWDDVVARTVEAGLG-GLECLSGIPGSAGATPVQNVGAYG----QEVSDTITRVRLLDRRTGEVRWVPAA 167 (363)
T ss_pred CCEEEEEcCCCHHHHHHHHHHcCCc-cccccCCCCcchhhHhhcCCChhH----HHHhhhEeEEEEEECCCCEEEEEEHH
Confidence 6799999999999999999999998 777788889999999999999976 5899999999999965 999987643
Q ss_pred cccCCCCCchhhhhhcc---CCCeeEEEEEEEEeccCC
Q 009201 256 LRKDNTGYDLKHLFIGS---EGSLGIVTKVSIHTPPKL 290 (540)
Q Consensus 256 ~~k~~~g~dL~~~~~Gs---~G~lGIIt~~~l~l~p~p 290 (540)
|+.+.+++| .+..+|||+++|++.|..
T Consensus 168 --------el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 168 --------DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred --------HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 778888876 234789999999999864
No 26
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=2.6e-19 Score=181.74 Aligned_cols=172 Identities=16% Similarity=0.216 Sum_probs=140.6
Q ss_pred HHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCC-CeEEeeCC
Q 009201 101 VLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMN-NIITFDKG 176 (540)
Q Consensus 101 ~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln-~i~~id~~ 176 (540)
++..|++ .++++.+++++.|+|++ +++++|+++++|+.+.|+|||+...+.. .+|++|++++++ ++ ..+.+
T Consensus 8 ~L~~~tt---~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g-~~GvVI~l~~~~~~i-~~~~~ 82 (295)
T PRK14649 8 PLAPYTS---WRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG-FDGLVARYRGQRWEL-HEHGD 82 (295)
T ss_pred ccccccE---eeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCC-cCeEEEEecCCCcEE-EEeCC
Confidence 4666663 47899999999999999 8899999999999999999999765533 358999998754 55 45555
Q ss_pred CcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCc
Q 009201 177 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTL 256 (540)
Q Consensus 177 ~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~ 256 (540)
+.+++|+||+.|.+|.+++.++|+. ++++.+..++||||++.||+|.++ +.+.|+|.++++++.+|++++.+++
T Consensus 83 ~~~v~v~AG~~~~~l~~~~~~~GL~-GlE~l~GIPGTvGGa~~mNaGayg----~ei~d~l~~V~~~~~~g~~~~~~~~- 156 (295)
T PRK14649 83 TAEVWVEAGAPMAGTARRLAAQGWA-GLEWAEGLPGTIGGAIYGNAGCYG----GDTATVLIRAWLLLNGSECVEWSVH- 156 (295)
T ss_pred cEEEEEEcCCcHHHHHHHHHHcCCc-cccccCCCCcchhHHHHhhccccc----eEhheeEEEEEEEeCCCCEEEEeHH-
Confidence 5589999999999999999999998 677888889999999999999986 8999999999999999999988654
Q ss_pred ccCCCCCchhhhhhcc----C--CC----eeEEEEEEEEeccCC
Q 009201 257 RKDNTGYDLKHLFIGS----E--GS----LGIVTKVSIHTPPKL 290 (540)
Q Consensus 257 ~k~~~g~dL~~~~~Gs----~--G~----lGIIt~~~l~l~p~p 290 (540)
|+...++.| . +. --||++++|++.|..
T Consensus 157 -------el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 157 -------DFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred -------HcCcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 333333333 1 11 138999999998753
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=2.4e-18 Score=173.55 Aligned_cols=184 Identities=19% Similarity=0.218 Sum_probs=146.3
Q ss_pred hCCCceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCC
Q 009201 90 LGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS 166 (540)
Q Consensus 90 ~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ 166 (540)
+..-++.+...++..|++ .+++|.+++++.|+|.+ +++++|+++++|+.+.|+|||+....-...+|++|.+.+
T Consensus 9 ~~~~~~~~~~~~L~~~tt---~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~ 85 (302)
T PRK14650 9 LKKINIKPQTKNLANYTT---YKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTGH 85 (302)
T ss_pred HHHcCCCCCCccccccce---eeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccceEEEEECC
Confidence 333356677778888874 48899999999999998 888999999999999999999964332212378888867
Q ss_pred CCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecC
Q 009201 167 MNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLAN 246 (540)
Q Consensus 167 ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~ 246 (540)
|+.+ +++. ..++|+||+.|.+|..++.++|+. +.+..+..++||||++.||+|.++ +.+.|.|.++++++.+
T Consensus 86 ~~~i-~~~~--~~v~a~AG~~~~~l~~~~~~~gl~-GlE~l~gIPGTVGGAv~mNAGayG----~ei~d~l~sV~~~d~~ 157 (302)
T PRK14650 86 LNKI-EIHD--NQIVAECGTNFEDLCKFALQNELS-GLEFIYGLPGTLGGAIWMNARCFG----NEISEILDKITFIDEK 157 (302)
T ss_pred cCcE-EEeC--CEEEEEeCCcHHHHHHHHHHcCCc-hhhhhcCCCcchhHHHHhhCCccc----cchheeEEEEEEEECC
Confidence 9987 5653 469999999999999999999998 778888889999999999999987 7899999999999999
Q ss_pred CcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCC
Q 009201 247 GDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 290 (540)
Q Consensus 247 G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p 290 (540)
|++++...+ ..++.+++...-.. -.||++++|++.|.+
T Consensus 158 g~~~~~~~~----e~~f~YR~S~f~~~--~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 158 GKTICKKFK----KEEFKYKISPFQNK--NTFILKATLNLKKGN 195 (302)
T ss_pred CCEEEEEHH----HcCcccccccCCCC--CEEEEEEEEEEcCCC
Confidence 999887654 22222222222111 259999999998864
No 28
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=6.1e-17 Score=160.96 Aligned_cols=173 Identities=23% Similarity=0.343 Sum_probs=142.2
Q ss_pred HHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCC
Q 009201 101 VLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS 177 (540)
Q Consensus 101 ~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~ 177 (540)
.+..|++ .++++.++.++.|++.+ ++++++.+.++|+.+.|+|||+.-..-. .++++|.+.+++.+ +++.++
T Consensus 8 ~L~~~tt---friGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g-~~gvvi~~~~~~~~-~~~~~~ 82 (291)
T COG0812 8 PLKRYTT---FRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGG-IGGVVIKLGKLNFI-EIEGDD 82 (291)
T ss_pred cccccee---EecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCC-CceEEEEcccccce-eeeccC
Confidence 3556663 47899999999999977 9999999999999999999998533222 35899999988887 677766
Q ss_pred cEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcc
Q 009201 178 GVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLR 257 (540)
Q Consensus 178 ~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~ 257 (540)
..++|++|+.|.+|.+++.++|+. +.+..+..++||||++.||+|.++ +.++|.+.++++++.+|++.+.+.+
T Consensus 83 ~~i~a~aG~~~~~l~~~~~~~gl~-GlE~l~gIPGsvGgav~mNaGAyG----~Ei~d~~~~v~~ld~~G~~~~l~~~-- 155 (291)
T COG0812 83 GLIEAGAGAPWHDLVRFALENGLS-GLEFLAGIPGSVGGAVIMNAGAYG----VEISDVLVSVEVLDRDGEVRWLSAE-- 155 (291)
T ss_pred CeEEEccCCcHHHHHHHHHHcCCc-chhhhcCCCcccchhhhccCcccc----cchheeEEEEEEEcCCCCEEEEEHH--
Confidence 699999999999999999999998 777788888999999999999987 8899999999999999999998765
Q ss_pred cCCCCCchhhhhhccCCCeeEEEEEEEEeccC
Q 009201 258 KDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 289 (540)
Q Consensus 258 k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~ 289 (540)
..++.++....-.+. .||++++|++.|-
T Consensus 156 --el~f~YR~S~f~~~~--~vvl~v~f~L~~~ 183 (291)
T COG0812 156 --ELGFGYRTSPFKKEY--LVVLSVEFKLTKG 183 (291)
T ss_pred --HhCcccccCcCCCCC--EEEEEEEEEeCCC
Confidence 222333333222222 8999999999985
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.71 E-value=2.6e-17 Score=168.48 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=138.6
Q ss_pred HHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEee--C
Q 009201 101 VLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD--K 175 (540)
Q Consensus 101 ~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id--~ 175 (540)
.+..|++ .+++|.+++++.|+|.+ +++++|+++++|+.+.|+|||+.-.. . ..|++|.+ +++.+ .++ .
T Consensus 8 ~L~~~tt---~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~-~~g~vI~~-~~~~~-~~~~~~ 80 (334)
T PRK00046 8 SLKPLNT---FGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-D-FDGTVLLN-RIKGI-EVLSED 80 (334)
T ss_pred cccccce---eccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-C-CCEEEEEe-cCCce-EEEecC
Confidence 4566663 47899999999999999 99999999999999999999997655 4 46888887 48887 552 2
Q ss_pred CC-cEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecC-CcEEEcc
Q 009201 176 GS-GVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLAN-GDVIDML 253 (540)
Q Consensus 176 ~~-~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~-G~v~~~~ 253 (540)
++ ..++|+||+.|.+|.+++.++|+. +.+.-+..++||||++.||+|.++ +.+.|.|.++++++.+ |++++..
T Consensus 81 ~~~~~v~a~AG~~~~~l~~~~~~~gl~-GlE~l~gIPGTVGGAv~mNaGayG----~ei~d~l~~V~v~d~~~g~~~~~~ 155 (334)
T PRK00046 81 DDAWYLHVGAGENWHDLVLWTLQQGMP-GLENLALIPGTVGAAPIQNIGAYG----VELKDVCDYVEALDLATGEFVRLS 155 (334)
T ss_pred CCeEEEEEEcCCcHHHHHHHHHHcCch-hhHHhcCCCcchhHHHHhcCCcCc----ccHheeEEEEEEEECCCCcEEEEE
Confidence 22 279999999999999999999998 788888889999999999999987 7999999999999987 9998877
Q ss_pred CCcccCCCCCchhhhhhccCC-CeeEEEEEEEEeccC
Q 009201 254 GTLRKDNTGYDLKHLFIGSEG-SLGIVTKVSIHTPPK 289 (540)
Q Consensus 254 ~~~~k~~~g~dL~~~~~Gs~G-~lGIIt~~~l~l~p~ 289 (540)
++ ..++.+++...-... .--||++++|++.|.
T Consensus 156 ~~----e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 156 AA----ECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred HH----HcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 54 122222222221110 124999999999885
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=5.7e-17 Score=165.79 Aligned_cols=141 Identities=13% Similarity=0.223 Sum_probs=119.1
Q ss_pred ceecCHHHHHHhhhhhhhccCCCccEEEecCCHH---HHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCe
Q 009201 94 SVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTN---EILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNI 170 (540)
Q Consensus 94 ~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~---~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i 170 (540)
+++....+|..|++ .+++|.+++++.|+|.+ +++++|+++++|+.+.|+|||+....-+ ..|++|.+.+|+.+
T Consensus 10 ~~~~~~~~La~~tT---~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g-~~G~VI~l~~~~~i 85 (354)
T PRK14648 10 RITRRNVPLAERCS---FRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEG-VPGLMLSLRRFRSL 85 (354)
T ss_pred eeeecCCCccccce---eeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCC-ccEEEEEeCCcCce
Confidence 44555566777773 47899999999999999 8999999999999999999999754432 34899999779887
Q ss_pred EEe---eCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEe
Q 009201 171 ITF---DKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVL 244 (540)
Q Consensus 171 ~~i---d~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~ 244 (540)
++ +.+...++|+||+.|.+|.+++.++|+. +.+.-+..++||||++.||+|.++ +.+.|.|.++++++
T Consensus 86 -~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~-GlE~laGIPGTVGGAv~mNAGAyG----~ei~d~l~~V~v~d 156 (354)
T PRK14648 86 -HTQTQRDGSVLVHAGAGLPVAALLAFCAHHALR-GLETFAGLPGSVGGAAYMNARCYG----RAIADCFHSARTLV 156 (354)
T ss_pred -EEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCc-chhhhcCCCcchhhHhhhcCCccc----eEhhheEEEEEEEe
Confidence 44 2232479999999999999999999998 778888889999999999999987 78999999999993
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.59 E-value=1e-14 Score=145.37 Aligned_cols=161 Identities=21% Similarity=0.231 Sum_probs=125.1
Q ss_pred HHHHhhhhhhhccCCCccEEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCC-CCCeEEeeCCCcE
Q 009201 101 VLLAANEDWMRKYRGSSKLLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFDKGSGV 179 (540)
Q Consensus 101 ~l~~~~~d~~~~~~~~p~~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~-ln~i~~id~~~~~ 179 (540)
++..|++ .++++.+++++ |+|.+++.+.. ++|+.+.|+|||+.-..-. .+|++|.+.+ ++.+ +++ .
T Consensus 8 ~L~~~tt---~riGG~A~~~~-p~~~~~l~~~~---~~p~~vlG~GSNlL~~D~g-~~g~vI~l~~~~~~~-~~~--~-- 74 (273)
T PRK14651 8 PLARYTT---LGVGGPAELWT-VETHEQLAEAT---EAPYRVLGGGSNLLVSDAG-VPERVIRLGGEFAEW-DLD--G-- 74 (273)
T ss_pred ccccccE---eecCceEEEEe-cCCHHHHHHHH---CCCeEEEeceeEEEEcCCC-cceEEEEECCcceeE-eEC--C--
Confidence 4666663 37899999999 99999666554 5899999999999644322 2488888866 6654 443 2
Q ss_pred EEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccC
Q 009201 180 LVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 259 (540)
Q Consensus 180 v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~ 259 (540)
+|+||+.|.+|.+++.++|+. +.+.-+..++||||++.||+|.++ +.+.|.|.++++++ +|++.+..++
T Consensus 75 -~a~AG~~~~~l~~~~~~~gl~-GlE~l~gIPGTVGGAv~mNaGayG----~ei~d~l~~V~~~~-~g~~~~~~~~---- 143 (273)
T PRK14651 75 -WVGGGVPLPGLVRRAARLGLS-GLEGLVGIPAQVGGAVKMNAGTRF----GEMADALHTVEIVH-DGGFHQYSPD---- 143 (273)
T ss_pred -EEECCCcHHHHHHHHHHCCCc-chhhhcCCCcchhhHHHhhCCccc----cChheeEEEEEEEE-CCCEEEEEHH----
Confidence 699999999999999999998 778888889999999999999987 78999999999997 8999887754
Q ss_pred CCCCchhhhhhccC-CCeeEEEEEEEEeccC
Q 009201 260 NTGYDLKHLFIGSE-GSLGIVTKVSIHTPPK 289 (540)
Q Consensus 260 ~~g~dL~~~~~Gs~-G~lGIIt~~~l~l~p~ 289 (540)
|+.+.++.|. -.--||++++|++.|.
T Consensus 144 ----e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 144 ----ELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred ----HccccccccCCCCCEEEEEEEEEECCC
Confidence 2222223221 0114899999999885
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.56 E-value=5.7e-15 Score=148.24 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=127.8
Q ss_pred EEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEe
Q 009201 161 IINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGL 240 (540)
Q Consensus 161 vIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~ 240 (540)
-|++..|..|+++|.++.+|+|||+++++++.++|-+.|+++|+.|.- ++.||||.|.+-+.-.+|++||...+.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~El-dDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPEL-DDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeeccc-ccceecceeeecccccccchhhhHHhhhhee
Confidence 345556777889999999999999999999999999999999987754 5789999998777777899999999999999
Q ss_pred EEEecCCcEEEccCCcccCCCCCchhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHH
Q 009201 241 EAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLRE 312 (540)
Q Consensus 241 ~vV~~~G~v~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
|||++||+++++.++ |...||+.++-.|.||+|..+.+++|+.|..+.....+.....+++..+-+.+
T Consensus 184 EvVladGelv~~t~d----ne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e 251 (543)
T KOG1262|consen 184 EVVLADGELVRVTPD----NEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITE 251 (543)
T ss_pred EEEecCCeEEEecCC----cccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHh
Confidence 999999999998764 34459999999999999999999999999988888888888887766554433
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.45 E-value=2.3e-13 Score=134.37 Aligned_cols=156 Identities=14% Similarity=0.102 Sum_probs=119.9
Q ss_pred HHHHHhhhhhhhccCCCccEEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcE
Q 009201 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGV 179 (540)
Q Consensus 100 ~~l~~~~~d~~~~~~~~p~~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~ 179 (540)
.++..|++ .+++|.+++++.|++.+ + ++|+.+.|+|||+.-.... .++ ++-+++++.+ +++. ..
T Consensus 5 ~~L~~~tt---~~iGG~A~~~~~~~~~~-l-------~~p~~vlG~GSNlLv~D~g-~~~-vv~~~~~~~~-~~~~--~~ 68 (257)
T PRK13904 5 IDFSKYSS---VKIGPPLEVLVLEEIDD-F-------SQDGQIIGGANNLLISPNP-KNL-AILGKNFDYI-KIDG--EC 68 (257)
T ss_pred cchhhcCc---eeECceEEEEEEechhh-h-------CCCeEEEeceeEEEEecCC-ccE-EEEccCcCeE-EEeC--CE
Confidence 45666763 48899999999999987 4 7999999999999654432 234 4434568887 5654 47
Q ss_pred EEEcCCccHHHHHHHHHhcCCcccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCcEEEccCCcccC
Q 009201 180 LVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 259 (540)
Q Consensus 180 v~v~aGv~~~~l~~~l~~~Gl~lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~~~k~ 259 (540)
++|+||+.|.+|.+++.++|+. +.+..+..++||||++.||+|.++ +.++|.|.++++++ | +..++
T Consensus 69 v~~~AG~~l~~l~~~~~~~gl~-GlE~l~gIPGtVGGAv~mNaGa~g----~ei~d~l~~V~~~~--~---~~~~~---- 134 (257)
T PRK13904 69 LEIGGATKSGKIFNYAKKNNLG-GFEFLGKLPGTLGGLVKMNAGLKE----YEISNNLESICTNG--G---WIEKE---- 134 (257)
T ss_pred EEEEcCCcHHHHHHHHHHCCCc-hhhhhcCCCccHHHHHHhcCCcCc----cchheeEEEEEEEe--e---EEeHH----
Confidence 9999999999999999999998 778888889999999999999987 78999999999997 4 22222
Q ss_pred CCCCchhhhhhccCCCeeEEEEEEEEeccCC
Q 009201 260 NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 290 (540)
Q Consensus 260 ~~g~dL~~~~~Gs~G~lGIIt~~~l~l~p~p 290 (540)
|+.+.++.|.=. .||++++|++.|..
T Consensus 135 ----e~~f~YR~S~~~-~iIl~a~f~l~~~~ 160 (257)
T PRK13904 135 ----DIGFGYRSSGIN-GVILEARFKKTHGF 160 (257)
T ss_pred ----HCcccccCcCCC-cEEEEEEEEECCCC
Confidence 333333333111 39999999999864
No 34
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=98.77 E-value=2.4e-07 Score=90.59 Aligned_cols=218 Identities=15% Similarity=0.204 Sum_probs=124.8
Q ss_pred EEeecCCHHHHHHHHHHHHHHhcCccceeeeeChHHHHHHHHhhcCCC----------CC-----------------C-C
Q 009201 296 AFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVR----------NP-----------------F-S 347 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~~d~~~~~~~~~~~~~~~----------~p-----------------~-~ 347 (540)
.++..+|.+.+.+.=+.+...+...|.+-|||.+.+.+++..|-+++. .| + +
T Consensus 2 FYIGTNd~~~L~~lRR~iL~~f~~LPisgEYmHRdafdia~~YGKDtfl~I~~lGt~~lP~lFa~K~~~D~~~~k~~~lp 81 (291)
T PF09330_consen 2 FYIGTNDPAVLTDLRRHILSNFKNLPISGEYMHRDAFDIAEKYGKDTFLMIKKLGTDRLPRLFALKARIDALLEKLPFLP 81 (291)
T ss_dssp EEEEES-HHHHHHHHHHHHHH-SS--SEEEEEEHHHHHHH----------------------------------------
T ss_pred eEeccCCHHHHHHHHHHHHhCCccCChhhhhhhhHHHHHHHHhcchHHHHHHHhCchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 466778888877777777777888999999999999888877643221 01 0 0
Q ss_pred C--------------------------CCcceEEEEEecCCChhHHHHHHHHHHHHHhhCCCcceeEEecCHHHHHHHHH
Q 009201 348 S--------------------------SMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWR 401 (540)
Q Consensus 348 ~--------------------------~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~ 401 (540)
. ..+...+++.+.+...++ .+.+++....... ....+.++++|.+...-
T Consensus 82 ~~lsDr~lQ~~s~l~P~hLP~Rm~~yr~ryeHHLilkm~~~gi~e----a~~~L~~~f~~~~-~G~~feCt~~E~~~A~L 156 (291)
T PF09330_consen 82 PNLSDRVLQALSNLLPNHLPKRMRDYRDRYEHHLILKMSGDGIEE----ARAYLKEFFAKAE-DGDFFECTPEEGKKAFL 156 (291)
T ss_dssp --------------------HHHHHHHHH-SEEEEEEE-TTHHHH----HHHHHHHHCCCSS---EEEE--HHHHHHHHH
T ss_pred CCccHHHHHHHHhhChhhcCHHHHHHHHhhhhheeeeecCCcHHH----HHHHHHHHhcccC-CCceEeeCHHHHHHHHH
Confidence 0 012345788887765433 3445554432221 13457788888888777
Q ss_pred HHHHHHHHHHh--------cCCceeeEEeecchhHHHHHHHHHHHHhhcC-cEEEEeecCCCceeEeeccCCCChHHHHH
Q 009201 402 IREGIAEALMK--------AGAVYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLGDGNLHLNISAPRYDDMIFAQ 472 (540)
Q Consensus 402 ~R~~~~~~~~~--------~g~~~~~Dv~vP~~~l~~~v~~~~~~l~~~~-~~~~~gH~gdGnlh~~i~~~~~~~~~~~~ 472 (540)
.|-.+..+.-+ ...+...|+++|... .++++.+-+.+...- ..+.|||+..-.+|-..+.....+ ...
T Consensus 157 hRFaaAgAaiRY~avh~~~vedivaLDiALrRNd-~dW~E~LP~ei~~~i~~klyyGHF~ChVfHQDYivKkGvD--~~a 233 (291)
T PF09330_consen 157 HRFAAAGAAIRYRAVHRKEVEDIVALDIALRRND-RDWFETLPPEIEDQIVHKLYYGHFFCHVFHQDYIVKKGVD--PHA 233 (291)
T ss_dssp HHTTHHHHHHHHHHHTCCCEECEEEEEEE-BTT--S--S----HHHHTTEEEEEEEEECCCTEEEEEEEEETTS---HHH
T ss_pred HHHHhhhhhHHHHHhccccccceeeeeeeecCCc-hhhhhhCCHHHHHHHHHHeeccccchhhchhhhhhccCCC--HHH
Confidence 77765553322 123567999998655 366666666555432 356799999988898877643222 245
Q ss_pred HHHHHHHHHHhcCCeEEeecCCchhhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCc
Q 009201 473 IEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYK 531 (540)
Q Consensus 473 ~~~~v~~~~~~~gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~~~DP~giLNPGk 531 (540)
+++.+.+.+.+.|+..-+||.+|-.- .+-..|++.-+.+||.|-||||.
T Consensus 234 lk~~ml~lLd~RGAeYPAEHNVGHLY----------~Akp~L~~fY~~lDPtNsfNPGI 282 (291)
T PF09330_consen 234 LKHEMLALLDARGAEYPAEHNVGHLY----------HAKPALKAFYRKLDPTNSFNPGI 282 (291)
T ss_dssp HHHHHHHHHHHCT-BSSSSS--TTTS-------------HHHHHHHHHH-TT--BSTTT
T ss_pred HHHHHHHHHHHhCCCCCcccCCCccc----------cCCHHHHHHHHhcCCCcCCCCCc
Confidence 77788999999999999999999762 34567788888999999999994
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=97.61 E-value=0.00014 Score=72.80 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=68.3
Q ss_pred EEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHH--
Q 009201 119 LLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLD-- 196 (540)
Q Consensus 119 ~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~-- 196 (540)
-++.|+|.+++++...+++-...+.+|||.+.-..-.....++||++++ .+-.+..+++.++++|++++.++.+...
T Consensus 4 ~y~~P~sl~Ea~~ll~~~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~~~~ 82 (258)
T PRK09799 4 QFFRPDSVEQALELKRRYQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDARFIP 82 (258)
T ss_pred cEeCCCCHHHHHHHHHhCCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCcccH
Confidence 4788999996666665553234578999988422111134689999986 5545555667899999999999987431
Q ss_pred ----hcCCcccccCCCCCcceecccccCCC
Q 009201 197 ----DHGFIMPLDLGAKGSCQIGGNVSTNA 222 (540)
Q Consensus 197 ----~~Gl~lp~~~~s~~~~tvGG~ia~na 222 (540)
+.=..+. +|.--+.+|+||+|++..
T Consensus 83 ~~L~~a~~~va-s~qIRN~aTiGGNl~~a~ 111 (258)
T PRK09799 83 AALREALGFVY-SRHLRNQSTIGGEIAARQ 111 (258)
T ss_pred HHHHHHHHHhC-CHHHhccchhHHHhhcCC
Confidence 1111121 355567789999998653
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=97.34 E-value=0.0005 Score=68.82 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=66.9
Q ss_pred EEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHH-----
Q 009201 120 LLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF----- 194 (540)
Q Consensus 120 vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~----- 194 (540)
++.|+|.+++++...+++=.-.+.+|||.+.-........++||++++ .+..+..+++.++++|++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~~~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~~~~ 82 (257)
T TIGR03312 4 FFRPESTIQALELKKRHTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNELTPA 82 (257)
T ss_pred eECCCCHHHHHHHHHhCCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcchHH
Confidence 678999997776655543223468999998532211123688999886 55445555678999999999998753
Q ss_pred -HHhcCCcccccCCCCCcceecccccCCC
Q 009201 195 -LDDHGFIMPLDLGAKGSCQIGGNVSTNA 222 (540)
Q Consensus 195 -l~~~Gl~lp~~~~s~~~~tvGG~ia~na 222 (540)
|.+.=..+. +|.-.+.+|+||+|++..
T Consensus 83 ~L~~aa~~va-~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 83 ALKEALGFVY-SRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred HHHHHHHHhC-CHHHhccccHHHHhhcCC
Confidence 222111222 456667899999998654
No 37
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.72 E-value=0.00037 Score=65.47 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=62.2
Q ss_pred cEEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCcc--cCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHH-
Q 009201 118 KLLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF- 194 (540)
Q Consensus 118 ~~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~~--~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~- 194 (540)
..+++|+|.+++++..+.. -...+.+|||.+....- .....++||++++..+-.+..+++.++++|++++.++.+.
T Consensus 3 ~~~~~P~sl~ea~~ll~~~-~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~~~~ 81 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLAKG-PDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELEESP 81 (171)
T ss_dssp -EEEE-SSHHHHHHHHHHG-TTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHHHHH
T ss_pred eEEEccCCHHHHHHHHhcC-CCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHhhcc
Confidence 4578999999666665532 24567899998632110 0123689999986555444445678999999999999886
Q ss_pred --------HHhcCCcccccCCCCCcceecccccCCC
Q 009201 195 --------LDDHGFIMPLDLGAKGSCQIGGNVSTNA 222 (540)
Q Consensus 195 --------l~~~Gl~lp~~~~s~~~~tvGG~ia~na 222 (540)
|.++-..+. .+.-.+.+|+||+|++..
T Consensus 82 ~~~~~~p~L~~~~~~ia-s~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 82 LIQQYFPALAQAARRIA-SPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHCTSS--HHHHTT-BHHHHHHHTB
T ss_pred hhhhhHHHHHHHHHHhC-CHhHeeeeeeccccccCc
Confidence 222211222 233446789999996543
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.49 E-value=0.0061 Score=66.26 Aligned_cols=105 Identities=12% Similarity=0.153 Sum_probs=71.7
Q ss_pred CccEEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCc-c-cCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHH
Q 009201 116 SSKLLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 193 (540)
Q Consensus 116 ~p~~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~-~-~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~ 193 (540)
...-+++|+|.+++++...++. ...+.+|||.+.-.. . ......+||++++..+..+..++..++++|++++.++.+
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~ 269 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAAHP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYA 269 (467)
T ss_pred CCceEECCCCHHHHHHHHhhCC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHH
Confidence 3466899999997666665543 345789999873221 0 112368999998665544555567899999999999987
Q ss_pred HHHhc--CC-----cccccCCCCCcceecccccCCC
Q 009201 194 FLDDH--GF-----IMPLDLGAKGSCQIGGNVSTNA 222 (540)
Q Consensus 194 ~l~~~--Gl-----~lp~~~~s~~~~tvGG~ia~na 222 (540)
.+.++ .+ .+ ..|.-.+.+||||+|++..
T Consensus 270 ~l~~~~p~L~~a~~~i-as~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 270 ALAKRYPELGELLRRF-ASLQIRNAGTLGGNIANGS 304 (467)
T ss_pred HHHHHhHHHHHHHHHh-CCHHHcCceecccccccCC
Confidence 66553 11 11 2345567899999998753
No 39
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=96.37 E-value=0.0047 Score=63.08 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=66.0
Q ss_pred EEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCc-cc-CCCcEEEEeCCCCCeEEee-CCCcEEEEcCCccHHHHHH--
Q 009201 119 LLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGS-VP-VFDEVIINMGSMNNIITFD-KGSGVLVCEAGCILENLVS-- 193 (540)
Q Consensus 119 ~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~-~~-~~~gvvIdl~~ln~i~~id-~~~~~v~v~aGv~~~~l~~-- 193 (540)
-++.|+|.+++++...++. ...+.+|||.+.... .. .....+||++++..+..+. .++..++++|++++.++.+
T Consensus 6 ~~~~P~sl~Ea~~ll~~~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~~~~ 84 (291)
T PRK09971 6 EYHEAATLEEAIELLADNP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQIIEDP 84 (291)
T ss_pred ceeCCCCHHHHHHHHHhCC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHhcCh
Confidence 5788999996666654443 345789999873211 11 1337899999865544444 2446799999999999986
Q ss_pred HHHhc-------CCcccccCCCCCcceecccccCCC
Q 009201 194 FLDDH-------GFIMPLDLGAKGSCQIGGNVSTNA 222 (540)
Q Consensus 194 ~l~~~-------Gl~lp~~~~s~~~~tvGG~ia~na 222 (540)
.+.++ =..+ .+|.-.+.+|+||+|++..
T Consensus 85 ~i~~~~p~L~~a~~~i-a~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 85 IIQKHLPALAEAAVSI-GGPQIRNVATIGGNICNGA 119 (291)
T ss_pred HHHHHhHHHHHHHHHh-CCHHHhcceecccccccCC
Confidence 22221 1111 2455567899999998643
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=96.18 E-value=0.0044 Score=63.92 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=65.8
Q ss_pred EEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCcc--cCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHH--
Q 009201 119 LLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF-- 194 (540)
Q Consensus 119 ~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~~--~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~-- 194 (540)
-++.|+|.+++++...+++ .-.+.+|||.+....- ......+||+.++..+-.+..++..++++|++++.++.+.
T Consensus 6 ~~~~P~sl~eA~~ll~~~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~~~~ 84 (321)
T TIGR03195 6 RTLRPASLADAVAALAAHP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAEDAL 84 (321)
T ss_pred eEECCCCHHHHHHHHhhCC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhhChh
Confidence 4789999997776655543 2347899997632211 1123689999976544334445577999999999999652
Q ss_pred -------HHhcCCcccccCCCCCcceecccccCCC
Q 009201 195 -------LDDHGFIMPLDLGAKGSCQIGGNVSTNA 222 (540)
Q Consensus 195 -------l~~~Gl~lp~~~~s~~~~tvGG~ia~na 222 (540)
|.+.=..+ .+|..-+.+|+||+|++..
T Consensus 85 i~~~~p~L~~a~~~i-as~qIRN~aTiGGNi~~~~ 118 (321)
T TIGR03195 85 VRTRWPALAQAARAV-AGPTHRAAATLGGNLCLDT 118 (321)
T ss_pred hHhHhHHHHHHHHHh-CCHHHhCceecHHhhhccC
Confidence 11111111 2455567899999999643
No 41
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=96.02 E-value=0.0039 Score=62.79 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=63.7
Q ss_pred cCCHHHHHHHhcCCCceEEEEcCCCCCCCCccc---CCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHH--HHh
Q 009201 123 PRTTNEILKYCNSRLLAVVPQGGNTGLVGGSVP---VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF--LDD 197 (540)
Q Consensus 123 P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~~~---~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~--l~~ 197 (540)
|+|.+++++...++. ...+.+|||.+.-.... .....+||++++..+..++.+++.++++|++++.++.+. +.+
T Consensus 1 P~sl~ea~~ll~~~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~i~~ 79 (264)
T TIGR03199 1 PAALDEAWSLLEKAP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPLIKR 79 (264)
T ss_pred CCCHHHHHHHHHhCC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChHhHh
Confidence 778886666554442 24578999987432111 124789999997766666666788999999999999742 111
Q ss_pred -------cCCcccccCCCCCcceecccccCC
Q 009201 198 -------HGFIMPLDLGAKGSCQIGGNVSTN 221 (540)
Q Consensus 198 -------~Gl~lp~~~~s~~~~tvGG~ia~n 221 (540)
+=..+ .+|.--+.+|+||+|++.
T Consensus 80 ~~p~L~~a~~~i-a~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 80 ALPCFVDAASAI-AAPGVRNRATIGGNIASG 109 (264)
T ss_pred HhHHHHHHHHHh-cCHHHhcceecHHhccCc
Confidence 10011 245556789999999765
No 42
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=95.78 E-value=0.046 Score=55.06 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=58.6
Q ss_pred ceeeEEeecchhHHHHHHHHHHHH-hhc---CcEEEEeec------------CCCce-e-Eeecc---CCCChHH---HH
Q 009201 416 VYKYDLSLPVEKMYDLVEKMRQRL-GET---AKVIGYGHL------------GDGNL-H-LNISA---PRYDDMI---FA 471 (540)
Q Consensus 416 ~~~~Dv~vP~~~l~~~v~~~~~~l-~~~---~~~~~~gH~------------gdGnl-h-~~i~~---~~~~~~~---~~ 471 (540)
.-+.++.||-+++.++.+.+.+.+ ... |.++.|.-- -++.+ + +.++. +....+. +.
T Consensus 141 HPWlnlfvP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfylv~lLrsa~P~~~~~~l~~l~ 220 (281)
T PF09265_consen 141 HPWLNLFVPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNRSKWDTRMSAVIPDEDVFYLVALLRSADPSDGPDDLERLL 220 (281)
T ss_dssp ---EEEEEEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEGGGS-TTSS----SSSEEEEEEEEE---TTSSCCHHHHHH
T ss_pred CcceeeecchHHHHHHHHHHHHHhhccCCCCceEEEEEecccccCCCCcccCCCCCeEEEEEEeCCCCCCCCchhHHHHH
Confidence 347999999999999988865533 221 233333211 12222 1 11211 1112222 22
Q ss_pred HHHHHHHHHHHhc--CCeEEeecCCchhhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCcc
Q 009201 472 QIEPYVYEWTSEH--RGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKV 532 (540)
Q Consensus 472 ~~~~~v~~~~~~~--gGsis~eHGiG~~k~~~l~~~~~~~~~~~m~~IK~~~DP~giLNPGk~ 532 (540)
.-.+.+.+.+.+. ||...-.|- ....+| ...+| ..++.+.+-|+.|||++||.||.-
T Consensus 221 ~qN~~il~~c~~agi~~k~Yl~~~--~t~~dW-~~HFG-~~W~~f~~~K~~yDP~~IL~PGq~ 279 (281)
T PF09265_consen 221 EQNRRILEFCRKAGIGGKQYLPHY--TTQEDW-RRHFG-PKWERFVERKRRYDPKAILAPGQG 279 (281)
T ss_dssp HHHHHHHHHHHHTT--EEESS-----SSHHHH-HHHHG-HHHHHHHHHHHHH-TT--B-GGG-
T ss_pred HHHHHHHHHHHHcCCceEECCCCC--CCHHHH-HHHhc-hHHHHHHHHHHhCCchhhcCCCCC
Confidence 3335677888554 455544443 233444 55667 699999999999999999999963
No 43
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=94.69 E-value=0.014 Score=42.48 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=21.4
Q ss_pred hhhhccCCHHHHHHHHHHhHhcCCCCCCCCC
Q 009201 500 NKIFYSKSPKTVQLMSSIKKLLDPNGILNPY 530 (540)
Q Consensus 500 ~~l~~~~~~~~~~~m~~IK~~~DP~giLNPG 530 (540)
++....+| +.++.|++||+.+||+|+|.-.
T Consensus 14 ~~~~~yyg-~n~~rL~~iK~~yDP~n~F~~~ 43 (47)
T PF08031_consen 14 DWQEAYYG-ENYDRLRAIKRKYDPDNVFRFP 43 (47)
T ss_dssp HHHHHHHG-GGHHHHHHHHHHH-TT-TS-ST
T ss_pred HHHHHHhc-hhHHHHHHHHHHhCccceeCCC
Confidence 45555566 6799999999999999999743
No 44
>PLN02906 xanthine dehydrogenase
Probab=94.12 E-value=0.08 Score=64.72 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=70.2
Q ss_pred ccEEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCc-c-cCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHH
Q 009201 117 SKLLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF 194 (540)
Q Consensus 117 p~~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~-~-~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~ 194 (540)
..-++.|+|.+++++...++. ...+.+|||.+.-.. . -....++||++++..+..+..++..++++|++++.++.+.
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~~~ 306 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEYP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQNL 306 (1319)
T ss_pred CceEECcCCHHHHHHHHHhCC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHHHH
Confidence 345889999996666554442 235688999883221 0 1134689999986655555556678999999999999987
Q ss_pred HHhcCC--------ccc---------ccCCCCCcceecccccCCC
Q 009201 195 LDDHGF--------IMP---------LDLGAKGSCQIGGNVSTNA 222 (540)
Q Consensus 195 l~~~Gl--------~lp---------~~~~s~~~~tvGG~ia~na 222 (540)
|.+.=. .+| ..|.--+.+||||+|++..
T Consensus 307 l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 307 FRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 654310 011 2355567899999998743
No 45
>PLN00192 aldehyde oxidase
Probab=93.98 E-value=0.089 Score=64.39 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=70.8
Q ss_pred ccEEEecCCHHHHHHHhcCCC---ceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHH
Q 009201 117 SKLLLQPRTTNEILKYCNSRL---LAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 193 (540)
Q Consensus 117 p~~vv~P~s~~~iv~~a~~~~---~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~ 193 (540)
..-++.|.|.+++++...++. -.-.+..|||.+.-.-......++||++++..+..+..++..++++|++++.++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 346899999996666655542 12446788888732111112368999998665555555667899999999999998
Q ss_pred HHHhcCC---ccc---------ccCCCCCcceecccccCCC
Q 009201 194 FLDDHGF---IMP---------LDLGAKGSCQIGGNVSTNA 222 (540)
Q Consensus 194 ~l~~~Gl---~lp---------~~~~s~~~~tvGG~ia~na 222 (540)
.+..+-. .+| ..|.--+.+||||+|++..
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 7765421 122 1345567899999998653
No 46
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.75 E-value=0.1 Score=63.74 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=69.5
Q ss_pred cEEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCc-c-cCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHH
Q 009201 118 KLLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFL 195 (540)
Q Consensus 118 ~~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~-~-~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l 195 (540)
.-++.|.|.+++++...++. .-.+..|||.+.-.. . ......+||++++..+..+..++..++++|++++.++.+.|
T Consensus 237 ~~~~~P~tl~ea~~ll~~~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~~~l 315 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKYP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVKDIL 315 (1330)
T ss_pred ceEECCCCHHHHHHHHHhCC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHHHHH
Confidence 46889999996666544442 245688999883221 0 11235899999866655555566789999999999999876
Q ss_pred Hhc----C----Cccc---------ccCCCCCcceecccccCCC
Q 009201 196 DDH----G----FIMP---------LDLGAKGSCQIGGNVSTNA 222 (540)
Q Consensus 196 ~~~----G----l~lp---------~~~~s~~~~tvGG~ia~na 222 (540)
.+. . -.+| ..|.--+.+|+||+|++..
T Consensus 316 ~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 316 ADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 533 0 0111 1345567899999998754
No 47
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=93.69 E-value=0.36 Score=48.25 Aligned_cols=109 Identities=12% Similarity=0.205 Sum_probs=60.5
Q ss_pred ceeeEEeecchhHHHHHHHHHHHHhhcC--c----E-EEEe--------ecCCC-ceeEeeccCCCCh--HHHHHHHHHH
Q 009201 416 VYKYDLSLPVEKMYDLVEKMRQRLGETA--K----V-IGYG--------HLGDG-NLHLNISAPRYDD--MIFAQIEPYV 477 (540)
Q Consensus 416 ~~~~Dv~vP~~~l~~~v~~~~~~l~~~~--~----~-~~~g--------H~gdG-nlh~~i~~~~~~~--~~~~~~~~~v 477 (540)
....++++|.++..++++++.+.+.+.+ . + +-+. ...++ .+++.+....... ...+.....+
T Consensus 125 ~~~~E~~iP~~~~~~~l~~l~~~~~~~~~~~~~~pie~R~~~~d~~~Ls~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 204 (259)
T PF04030_consen 125 FWEMEYAIPIENAPEALRELRALIDKEGGFPVHFPIEVRFVKADDAWLSPAYGRDTCYIEIHMYRPMGDPVPYEEFFRAF 204 (259)
T ss_dssp --EEEEEEEGGGHHHHHHHHHHTHHHHG--GGEEEEEEEEE--B-STT-TTBTS-EEEEEEEE-S-HH---HHHHHHHHH
T ss_pred ceeEEEeeCHHHHHHHHHHHHHHHHHcccCceeEEEEEEEECCChhhcCCCCCCCEEEEEEEEeCCccccccHHHHHHHH
Confidence 4567999999999999999998877764 1 1 1111 11112 3444443311111 1144455566
Q ss_pred HHHHHhcCCeEEeecCC-chhhhhhhhccCCHHHHHHHHHHhHhcCCCCCCC
Q 009201 478 YEWTSEHRGSISAEHGL-GLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILN 528 (540)
Q Consensus 478 ~~~~~~~gGsis~eHGi-G~~k~~~l~~~~~~~~~~~m~~IK~~~DP~giLN 528 (540)
.+.+.++||... -|- -....+.+...| +.++.+.++|+.+||+|+|.
T Consensus 205 e~~~~~~ggRpH--WgK~~~~~~~~l~~~Y--p~~~~F~~~r~~~DP~g~F~ 252 (259)
T PF04030_consen 205 EQILRKYGGRPH--WGKNHTLTAEQLRKLY--PRLDDFLAVRKKLDPQGVFL 252 (259)
T ss_dssp HHHHGGGT-EE---TTS-----HHHHHHT---TTHHHHHHHHHHH-TT-TT-
T ss_pred HHHHHHcCCEEC--cCcCCCCCHHHHHHHC--cCHHHHHHHHHHhCCCCCCC
Confidence 777889999764 110 011233455556 47999999999999999985
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=92.89 E-value=0.21 Score=50.52 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=68.6
Q ss_pred ccEEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCcc--cCCCcEEEEeCCCCCeE-EeeCCCcEEEEcCCccHHHHHH
Q 009201 117 SKLLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNII-TFDKGSGVLVCEAGCILENLVS 193 (540)
Q Consensus 117 p~~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~~--~~~~gvvIdl~~ln~i~-~id~~~~~v~v~aGv~~~~l~~ 193 (540)
+-.+.+|.|.+++++..++.. -..+.+|||++....- -....-+||++++.... ....+++.++++|-+++.++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ei~~ 81 (284)
T COG1319 3 NFEYYRPASVEEALNLLARAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTEIAR 81 (284)
T ss_pred ceEEECCCCHHHHHHHHHhCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHHHHh
Confidence 345789999997776666555 5667899999863210 11345689998874222 2334566799999999999863
Q ss_pred HHHhcCC--------cccccCCCCCcceecccccCCCC
Q 009201 194 FLDDHGF--------IMPLDLGAKGSCQIGGNVSTNAG 223 (540)
Q Consensus 194 ~l~~~Gl--------~lp~~~~s~~~~tvGG~ia~na~ 223 (540)
-=.-+.. ....+|..-+.+|+||+++.+..
T Consensus 82 ~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p 119 (284)
T COG1319 82 HPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADP 119 (284)
T ss_pred ChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCC
Confidence 2211111 11236777788999999766543
No 49
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=91.71 E-value=0.87 Score=45.16 Aligned_cols=106 Identities=16% Similarity=0.262 Sum_probs=61.8
Q ss_pred eeeEEeecchhHHHHHHHHHHHHhhcC------c----E-EEE-----eecCCC--ce--eEeeccCCCCh---HHHHHH
Q 009201 417 YKYDLSLPVEKMYDLVEKMRQRLGETA------K----V-IGY-----GHLGDG--NL--HLNISAPRYDD---MIFAQI 473 (540)
Q Consensus 417 ~~~Dv~vP~~~l~~~v~~~~~~l~~~~------~----~-~~~-----gH~gdG--nl--h~~i~~~~~~~---~~~~~~ 473 (540)
...+.+||.++..++++++++..+... . + +-| .+++-+ .+ |+.......+. ...+.+
T Consensus 63 ~E~EyaVP~e~~~~aL~elr~l~~~~~~~l~~~ev~fPIevR~vaADdawLSp~rDSv~I~~~~yr~~~~~~~pr~~~~~ 142 (257)
T PLN00107 63 FQSAISVPLSGAAAFINDIKALRDIEPDALCGLELNYGVLLRYVRASPAHLGKEEDALDFDLTYYRSKDDPAAPRLHEDA 142 (257)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcccccccccccCeEEEEecCcchhhCCCCCeEEEEEEEecccCCccccccHHHH
Confidence 457899999999999999999877652 1 0 111 112211 22 33322211011 123344
Q ss_pred HHHHHHH-HHhcCCeEEeecCCchhh---hhhhhccCCHHHHHHHHHHhHhcCCCCCCC
Q 009201 474 EPYVYEW-TSEHRGSISAEHGLGLMK---ANKIFYSKSPKTVQLMSSIKKLLDPNGILN 528 (540)
Q Consensus 474 ~~~v~~~-~~~~gGsis~eHGiG~~k---~~~l~~~~~~~~~~~m~~IK~~~DP~giLN 528 (540)
...+... +.++||... -|+++ .+.+..-| ..++.+.++|+.+||+|+|-
T Consensus 143 f~eiEqial~kygGRPH----WGK~h~l~~~~l~~lY--Pr~~dFlavR~~lDP~G~F~ 195 (257)
T PLN00107 143 MEEIEQMAILKYGALPH----WGKNRNAAFDGAIAKY--KKAGEFLKVKERLDPEGLFS 195 (257)
T ss_pred HHHHHHHHHHhcCCcCC----chhccCCCHHHHHHHC--cCHHHHHHHHHHhCCCCccC
Confidence 4455555 788888753 22221 22333334 47899999999999999863
No 50
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=88.31 E-value=1.2 Score=46.16 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=75.0
Q ss_pred cCCCccEEEecCCHHHHHHH-hcCCCceEEEEcCCCCCCCCcccC---CCcEEEEeCCCCCeEEeeCCCcEEEEcCCccH
Q 009201 113 YRGSSKLLLQPRTTNEILKY-CNSRLLAVVPQGGNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAGCIL 188 (540)
Q Consensus 113 ~~~~p~~vv~P~s~~~iv~~-a~~~~~~v~~~GgGt~~~g~~~~~---~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~ 188 (540)
+++..+.++.|.+.++.... +..-+ .++..|+|.+. --+.. +-..+|-..++..+..|+..++.++++||+++
T Consensus 199 ~~~~~~r~~~P~~l~D~a~l~aa~P~--AtivAGsTDvg-LwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~ 275 (493)
T COG4630 199 VGSGDDRFIVPATLADFADLLAAHPG--ATIVAGSTDVG-LWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTY 275 (493)
T ss_pred ecCCCceeEeeccHHHHHHHHhhCCC--CEEEecCcchh-hHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccH
Confidence 45556789999999822222 22333 34566777652 11211 11345555666655566667789999999999
Q ss_pred HHHHHHHHhcCCc-------ccccCCCCCcceecccccCCCCCCCccccccccccEeEeEEEecCCc
Q 009201 189 ENLVSFLDDHGFI-------MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGD 248 (540)
Q Consensus 189 ~~l~~~l~~~Gl~-------lp~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~vV~~~G~ 248 (540)
.|.+++|.++=-. |+.+ ..-+.+|+||+|++++- .+ --.-.=..++.++++-.|+
T Consensus 276 t~a~~~la~~~P~l~~L~~r~gg~-qvRN~gTlGGNIangSP-IG---DtPPaLIALgA~ltLr~g~ 337 (493)
T COG4630 276 TQAYRALAGRYPALGELWDRFGGE-QVRNMGTLGGNIANGSP-IG---DTPPALIALGATLTLRSGD 337 (493)
T ss_pred HHHHHHHHhhCchHHHHHHHhcch-hhhccccccccccCCCc-CC---CCCchhhhcCcEEEEEecC
Confidence 9999999875211 1111 12356899999987531 10 0011113567777776654
No 51
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=54.30 E-value=60 Score=36.13 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=22.5
Q ss_pred eeeEEeecch-------hHHHHHHHHHHHHhhcC
Q 009201 417 YKYDLSLPVE-------KMYDLVEKMRQRLGETA 443 (540)
Q Consensus 417 ~~~Dv~vP~~-------~l~~~v~~~~~~l~~~~ 443 (540)
+..++++|.+ +..++++++++.+++.+
T Consensus 381 ~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~~~ 414 (541)
T TIGR01676 381 WVSETCFPAGTLAKPNMKDIEYIEELKQLIEKEN 414 (541)
T ss_pred EEEEEEEecccccccccchHHHHHHHHHHHHhcC
Confidence 4469999999 55999999999888763
No 52
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.66 E-value=70 Score=34.73 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=33.8
Q ss_pred HHhcCCcccccCCCCCcceecccccC-CCCCCCccccccccccEeEeEEEecCCcEEEccCC
Q 009201 195 LDDHGFIMPLDLGAKGSCQIGGNVST-NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGT 255 (540)
Q Consensus 195 l~~~Gl~lp~~~~s~~~~tvGG~ia~-na~G~~~~~yG~~~d~V~~~~vV~~~G~v~~~~~~ 255 (540)
|..+|..||- |-|+|.. -|.|- ......+-.|.++.+|..||+++++.+.
T Consensus 278 LtANGIeLPD---------V~GaivSGtAsGD--wTLSCVRGqV~SiTFVF~DGtirTvp~~ 328 (472)
T TIGR03752 278 LTANGIELPD---------VAGAVVSGTASGD--WTLSCVRGQVRSLTFVFNDGTIRTVPRP 328 (472)
T ss_pred ccccCccCCC---------ccceEEeeeeccc--eEEEEEeeeEEEEEEEEeCCeEEEecCC
Confidence 4556777762 4566543 34442 2245678899999999999999998643
No 53
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=26.51 E-value=1.1e+02 Score=36.79 Aligned_cols=118 Identities=17% Similarity=0.101 Sum_probs=70.3
Q ss_pred cEEEecCCHHHHHHHhcCCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEcCCccHHHHHHHHHh
Q 009201 118 KLLLQPRTTNEILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDD 197 (540)
Q Consensus 118 ~~vv~P~s~~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~l~~~l~~ 197 (540)
.-...|.|.+++..+-. .........|+|...-.-...+....||.++......+..++.-++++|++++.+..+.|.+
T Consensus 215 ~~W~~P~sl~eL~~~~~-~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~l~~ 293 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKA-NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMELLRK 293 (1257)
T ss_pred cEEeCcccHHHHHHHHh-cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHHHHH
Confidence 45778999986655543 33344456666654211111122457887775543334444566899999999999888865
Q ss_pred cCCccc---------------ccCCCCCcceecccccCCCCCCCccccccccccEeEeEE
Q 009201 198 HGFIMP---------------LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEA 242 (540)
Q Consensus 198 ~Gl~lp---------------~~~~s~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~~~v 242 (540)
.-- .| ....-.+.+|+||+|.+.+-+. -..+|...-+++
T Consensus 294 ~~~-~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~~-----~f~SDl~~~l~a 347 (1257)
T KOG0430|consen 294 LVK-RPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQSP-----EFPSDLFILLEA 347 (1257)
T ss_pred HHh-CcHHHHHHHHHHHHHHhcccceeccccccceeEeccCCC-----CCchhHHHHHHh
Confidence 432 12 1123456789999998877654 345664443333
No 54
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=20.95 E-value=2.7e+02 Score=20.84 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=33.2
Q ss_pred chhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHH
Q 009201 264 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 313 (540)
Q Consensus 264 dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
||..+|. .+|.|..+.+...+.......+++.|.+.+++.+++...
T Consensus 14 ~l~~~f~----~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 14 DLRNFFS----RFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp HHHHHCT----TSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 5555543 245688888887665556788899999999998877554
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=20.43 E-value=2.2e+02 Score=20.91 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=31.5
Q ss_pred chhhhhhccCCCeeEEEEEEEEeccCCcceeEEEeecCCHHHHHHHHHHH
Q 009201 264 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 313 (540)
Q Consensus 264 dL~~~~~Gs~G~lGIIt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
+|..+|.. +|.|..+.+...+........++.|.+.+++..++..+
T Consensus 14 ~l~~~f~~----~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 14 ELRDFFSQ----FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp HHHHHHHT----TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hhhcccccccccccccccceEEEEEcCHHHHHHHHHHc
Confidence 66666642 45566666655444455677899999999998887655
Done!