Your job contains 1 sequence.
>009203
MSELIVKKPKQEEEEEEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEA
EKRLEDSQSKLARLRCQDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTE
LLIPAVNPKISEPIKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEV
RDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFV
TSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS
QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE
DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMS
VLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL
YITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009203
(540 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2157338 - symbol:AT5G50970 species:3702 "Arabi... 1420 3.3e-160 2
TAIR|locus:2147690 - symbol:AT5G19920 "AT5G19920" species... 1057 1.6e-115 2
FB|FBgn0027524 - symbol:CG3909 species:7227 "Drosophila m... 144 1.5e-07 2
TAIR|locus:2043929 - symbol:AT2G43770 "AT2G43770" species... 137 3.5e-06 1
UNIPROTKB|Q9NSS8 - symbol:DKFZp434D199 "Putative uncharac... 103 0.00010 1
ZFIN|ZDB-GENE-040426-978 - symbol:snrnp40 "small nuclear ... 123 0.00013 1
TAIR|locus:2154438 - symbol:AT5G23430 "AT5G23430" species... 126 0.00023 1
TAIR|locus:2150788 - symbol:AT5G08390 "AT5G08390" species... 126 0.00023 1
DICTYBASE|DDB_G0271788 - symbol:wdr57 "putative U5 small ... 120 0.00029 1
UNIPROTKB|Q96DI7 - symbol:SNRNP40 "U5 small nuclear ribon... 119 0.00038 1
UNIPROTKB|Q2HJH6 - symbol:SNRNP40 "U5 small nuclear ribon... 118 0.00049 1
TAIR|locus:2050372 - symbol:FVE species:3702 "Arabidopsis... 103 0.00051 2
MGI|MGI:2141989 - symbol:Grwd1 "glutamate-rich WD repeat ... 123 0.00053 2
UNIPROTKB|B8YE10 - symbol:TBL1Y "Transducin (Beta)-like 1... 120 0.00054 1
UNIPROTKB|Q9BQ67 - symbol:GRWD1 "Glutamate-rich WD repeat... 119 0.00055 1
UNIPROTKB|F1MLP7 - symbol:SNRNP40 "U5 small nuclear ribon... 117 0.00064 1
UNIPROTKB|F1SVA6 - symbol:SNRNP40 "Uncharacterized protei... 117 0.00064 1
MGI|MGI:1913835 - symbol:Snrnp40 "small nuclear ribonucle... 117 0.00064 1
UNIPROTKB|F1RL85 - symbol:GRWD1 "Uncharacterized protein"... 118 0.00071 1
RGD|1310649 - symbol:Grwd1 "glutamate-rich WD repeat cont... 118 0.00071 1
TAIR|locus:2089303 - symbol:AT3G16650 "AT3G16650" species... 118 0.00080 1
>TAIR|locus:2157338 [details] [associations]
symbol:AT5G50970 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
EMBL:AK175154 IPI:IPI00517020 RefSeq:NP_199910.2 UniGene:At.46740
ProteinModelPortal:Q683G3 SMR:Q683G3 STRING:Q683G3 PRIDE:Q683G3
EnsemblPlants:AT5G50970.1 GeneID:835170 KEGG:ath:AT5G50970
TAIR:At5g50970 eggNOG:NOG286289 HOGENOM:HOG000029184
InParanoid:Q683G3 OMA:EDMAWHP PhylomeDB:Q683G3
ProtClustDB:CLSN2687179 Genevestigator:Q683G3 Uniprot:Q683G3
Length = 512
Score = 1420 (504.9 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
Identities = 277/415 (66%), Positives = 325/415 (78%)
Query: 127 NPKISEPIKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTK 186
+P S+ ++ S + D SS +S + +VK K E S R+S + V+DRG K
Sbjct: 108 SPSPSKTLRP--SDSSDHPRSSCGSSVSKAKTVVVKQKSETS-RDSPN-----VKDRGIK 159
Query: 187 RKFEQKEHRELIPLVRTSASPATIHCHTSNHVXXXXXXXXXXXXXNPVNEQLFVTSALDG 246
RKFEQKEH+ELI L+ ++SP TI CHTSN + PVNEQLF TS+LDG
Sbjct: 160 RKFEQKEHKELIRLIARNSSPTTIKCHTSNQISSQHKRKLRSLILCPVNEQLFATSSLDG 219
Query: 247 VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN 306
++ LWQLQ ASLLSTTDCLS K RRW ED+AWHP GN+LFS +TAD GDSQIS+LN
Sbjct: 220 MVSLWQLQPGRLVASLLSTTDCLSRKQRRWAEDMAWHPSGNTLFSVYTADDGDSQISILN 279
Query: 307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDS-WKP 365
LNKT+ VTFL++KPHVKGIIN+I F+PWEN CF TGGSDHAVVLW+E D E++ WK
Sbjct: 280 LNKTRE---VTFLENKPHVKGIINNIKFMPWENTCFVTGGSDHAVVLWNESDDEENKWKS 336
Query: 366 KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNP 425
K LHRNLHS+AVMGV GM+ K ++LS GADKRI GFD VGRAD+KHQI+ KCMSVL NP
Sbjct: 337 KPLHRNLHSAAVMGVDGMKNKNVILSVGADKRIYGFDVQVGRADYKHQIDYKCMSVLANP 396
Query: 426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG 485
CDFNLFMVQ+G P +QLRL+DIRLR+TE+H+FGWKQ+SSESQSALINQSWSPDGLYITSG
Sbjct: 397 CDFNLFMVQSGEPEKQLRLFDIRLRKTELHSFGWKQDSSESQSALINQSWSPDGLYITSG 456
Query: 486 SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
S DPVIH+FDIRY+A KP+QSI+AHQKRVFKA WHYS PLLISISSDLNIGLHKI
Sbjct: 457 SVDPVIHVFDIRYNARKPTQSIKAHQKRVFKAEWHYSQPLLISISSDLNIGLHKI 511
Score = 162 (62.1 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
Identities = 35/77 (45%), Positives = 51/77 (66%)
Query: 1 MSELIV--KKPKQXXXXXXXNGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLE 58
MSEL KKPK + ++EQEE LVAL+EHR+ E++ L IS Y+++L
Sbjct: 1 MSELCTNPKKPKLKEEDEEEEANVSCREEQEEVLVALVEHRSNEIERLNNHISNYQTKLI 60
Query: 59 EAEKRLEDSQSKLARLR 75
EAE+ L++S++KLA+LR
Sbjct: 61 EAERSLQNSKAKLAQLR 77
>TAIR|locus:2147690 [details] [associations]
symbol:AT5G19920 "AT5G19920" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 ProtClustDB:CLSN2687179
EMBL:BT005936 EMBL:AK118414 IPI:IPI00537392 RefSeq:NP_197492.1
UniGene:At.31239 ProteinModelPortal:Q8GX62 SMR:Q8GX62 IntAct:Q8GX62
EnsemblPlants:AT5G19920.1 GeneID:832114 KEGG:ath:AT5G19920
TAIR:At5g19920 eggNOG:NOG236178 HOGENOM:HOG000148321
InParanoid:Q8GX62 OMA:LINRIMF PhylomeDB:Q8GX62
Genevestigator:Q8GX62 Uniprot:Q8GX62
Length = 656
Score = 1057 (377.1 bits), Expect = 1.6e-115, Sum P(2) = 1.6e-115
Identities = 198/362 (54%), Positives = 259/362 (71%)
Query: 180 VRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVXXXXXXXXXXXXXNPVNEQLF 239
+ +G + K E + H ELI L+ S+ TI T+ + +P N +LF
Sbjct: 295 ISQQGQQEKSEFRGHDELIALIGRSSLRPTIEGRTAGMLPSCHTKRMRSLALSPSNRELF 354
Query: 240 VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299
TSALDG + W+LQS S A+L T + ++ ++W EDIAWHP N+LFS +TAD G
Sbjct: 355 ATSALDGAVHFWKLQSDRSTATLFKTVNRVAVDQKKWAEDIAWHPHKNALFSVYTADDGH 414
Query: 300 SQISVLNLNKTKGRACVT-FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD 358
QIS + LN+ G C + F++D+PH KG+IN I+F PW++PCF TGGSDHAVVLW ++
Sbjct: 415 PQISAIYLNEA-GERCESQFMEDRPHSKGLINRIMFTPWDDPCFITGGSDHAVVLWRDQC 473
Query: 359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKC 418
++WKP LHR+LHSSAVMGV GM+ VLS G D+R +GFDA + FKH+++++C
Sbjct: 474 ENNAWKPTLLHRDLHSSAVMGVTGMRHNNHVLSCGDDRRFVGFDAREEKVTFKHRLDNRC 533
Query: 419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD 478
+++PNP D NL MV T RQLRLYD+RL QTE+ +FGWKQESSESQSALINQSWSPD
Sbjct: 534 TNIMPNPRDVNLVMVNTRQLDRQLRLYDVRLPQTELFSFGWKQESSESQSALINQSWSPD 593
Query: 479 GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538
GL+I+SGSADPVIH+FDIRY+A PS S++AH+KRVFKA WH S+PLL+SISSDL IG+H
Sbjct: 594 GLHISSGSADPVIHIFDIRYNAPSPSLSMKAHKKRVFKAEWHSSYPLLVSISSDLAIGIH 653
Query: 539 KI 540
K+
Sbjct: 654 KL 655
Score = 102 (41.0 bits), Expect = 1.6e-115, Sum P(2) = 1.6e-115
Identities = 43/170 (25%), Positives = 74/170 (43%)
Query: 27 EQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQDNVVSSRSS 86
+ EAL+ ++ R K +Q L+ +IS +L E K + D+++K ++ N + S+S
Sbjct: 32 DDREALLEFMDQRAKSIQRLKDQISSLDRKLAEERKLMADAEAKFLQIDRVGNGIFSKSK 91
Query: 87 P-ANG-TNSV----KVERRSISPVRINEGSSRNKSQSRTELLIPAV--NPKISEPIKSTW 138
P A G T S+ + NE S+ L +P++ P +T
Sbjct: 92 PKAPGKTGSILGIAEFWNEGNKTKTANENSTPQSPSEMESLKLPSIILPPSFKRRASAT- 150
Query: 139 SGAKDPSGSSTQASPAA---HSIGIVKVKGEKSHR-NSSDSEIV-EVRDR 183
+ +TQA P A ++I G ++ R S E+V E +DR
Sbjct: 151 --VRAEVNETTQAQPMATRDYNIPREDTCGPEAKRPRSIPDEVVRETQDR 198
>FB|FBgn0027524 [details] [associations]
symbol:CG3909 species:7227 "Drosophila melanogaster"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
EMBL:AE014297 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
HSSP:P16649 GeneTree:ENSGT00700000104507 KO:K12602 EMBL:AF132174
RefSeq:NP_649969.1 UniGene:Dm.3198 SMR:Q9XZ19 IntAct:Q9XZ19
MINT:MINT-1753051 STRING:Q9XZ19 EnsemblMetazoa:FBtr0082172
GeneID:41226 KEGG:dme:Dmel_CG3909 UCSC:CG3909-RA
FlyBase:FBgn0027524 InParanoid:Q9XZ19 OMA:HETWVEC OrthoDB:EOG4R7SSH
GenomeRNAi:41226 NextBio:822821 Uniprot:Q9XZ19
Length = 331
Score = 144 (55.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 51/201 (25%), Positives = 96/201 (47%)
Query: 344 TGGSDHAVVLWSERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFD 402
TGG D V +W D ++ K H+ H+ V+ VA Q + S+ D + +D
Sbjct: 57 TGGLDDLVKVW---DLQEDNTLKLRHKLKGHALGVVSVAVSSDGQTIASSSLDSTMCLWD 113
Query: 403 AGVGRADFKHQIES---KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459
A G D KH + +V +PC N +++ +G ++ +Y + + E
Sbjct: 114 ARSG--DKKHLLSFGPVDLWTVQFSPC--NKYVI-SGLNDGKISMYSVETGKAE------ 162
Query: 460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW 519
+ +++ ++ ++SPDG YI SG+ D +I +FD+ +A K Q++ H V +
Sbjct: 163 QTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDV--AAGKVVQTLEGHAMPVRSLCF 220
Query: 520 HYSHPLLISISSDLNIGLHKI 540
+ LL++ S D ++ L+ +
Sbjct: 221 SPNSQLLLTASDDGHMKLYDV 241
Score = 46 (21.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 236 EQLFVTSALDGVIRLWQLQ 254
+ VT LD ++++W LQ
Sbjct: 52 KDFLVTGGLDDLVKVWDLQ 70
>TAIR|locus:2043929 [details] [associations]
symbol:AT2G43770 "AT2G43770" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002685 GenomeReviews:CT485783_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
HSSP:P16649 GO:GO:0080008 HOGENOM:HOG000091644 KO:K12857
OMA:HAGSVNE EMBL:AC002333 UniGene:At.66405 EMBL:AY093182
EMBL:BT008828 IPI:IPI00529336 PIR:C84870 RefSeq:NP_181905.1
ProteinModelPortal:O22826 SMR:O22826 IntAct:O22826 STRING:O22826
PaxDb:O22826 PRIDE:O22826 EnsemblPlants:AT2G43770.1 GeneID:818980
KEGG:ath:AT2G43770 TAIR:At2g43770 InParanoid:O22826
PhylomeDB:O22826 ProtClustDB:CLSN2683090 ArrayExpress:O22826
Genevestigator:O22826 Uniprot:O22826
Length = 343
Score = 137 (53.3 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 51/207 (24%), Positives = 89/207 (42%)
Query: 340 PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRII 399
P +G D LW R A+ + V+ + + G D +
Sbjct: 152 PLIISGSDDGTAKLWDMRQRG------AIQTFPDKYQITAVSFSDAADKIFTGGVDNDVK 205
Query: 400 GFDAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE--- 453
+D G A HQ MS+ P+ +++ G + L ++D+R +
Sbjct: 206 VWDLRKGEATMTLEGHQDTITGMSLSPD----GSYLLTNGMDNK-LCVWDMRPYAPQNRC 260
Query: 454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKR 513
+ F Q + E L+ SWSPDG +T+GS+D ++H++D ++ + + H
Sbjct: 261 VKIFEGHQHNFEKN--LLKCSWSPDGTKVTAGSSDRMVHIWDT--TSRRTIYKLPGHTGS 316
Query: 514 VFKAVWHYSHPLLISISSDLNIGLHKI 540
V + V+H + P++ S SSD NI L +I
Sbjct: 317 VNECVFHPTEPIIGSCSSDKNIYLGEI 343
>UNIPROTKB|Q9NSS8 [details] [associations]
symbol:DKFZp434D199 "Putative uncharacterized protein
DKFZp434D199" species:9606 "Homo sapiens" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 EMBL:CH471059
EMBL:AL451070 EMBL:AC114495 UniGene:Hs.33962 HGNC:HGNC:30857
ChiTaRS:SNRNP40 EMBL:AL157420 IPI:IPI00385642 PIR:T46935 SMR:Q9NSS8
STRING:Q9NSS8 Ensembl:ENST00000373720 Uniprot:Q9NSS8
Length = 127
Score = 103 (41.3 bits), Expect = 0.00010, P = 0.00010
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 470 LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI 529
L+ SWSPDG I +GSAD ++++D ++ + + H + + +H P++IS
Sbjct: 58 LLRCSWSPDGSKIAAGSADRFVYVWDT--TSRRILYKLPGHAGSINEVAFHPDEPIIISA 115
Query: 530 SSDLNIGLHKI 540
SSD + + +I
Sbjct: 116 SSDKRLYMGEI 126
>ZFIN|ZDB-GENE-040426-978 [details] [associations]
symbol:snrnp40 "small nuclear ribonucleoprotein 40
(U5)" species:7955 "Danio rerio" [GO:0008150 "biological_process"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
ZFIN:ZDB-GENE-040426-978 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0003676 GO:GO:0030529
HSSP:P16649 HOGENOM:HOG000091644 KO:K12857 OMA:HAGSVNE
GeneTree:ENSGT00690000101787 CTD:9410 HOVERGEN:HBG105197
OrthoDB:EOG4JM7Q0 EMBL:CU207343 EMBL:BC051783 IPI:IPI00506401
RefSeq:NP_956616.1 UniGene:Dr.133508 STRING:Q7ZTY9
Ensembl:ENSDART00000038230 GeneID:393292 KEGG:dre:393292
InParanoid:Q7ZTY9 NextBio:20814348 Uniprot:Q7ZTY9
Length = 347
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 53/223 (23%), Positives = 94/223 (42%)
Query: 322 KPHVKGIINSIIFLPWENPCFA-TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380
K H +NS F P A TG D V LW R K ++H ++ V+ V
Sbjct: 138 KGHTS-FVNSC-FPARRGPQLACTGSDDGTVKLWDIR------KKASVHTFQNTYQVLSV 189
Query: 381 AGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR 440
++S G D I +D + + Q ++ L D + + + +
Sbjct: 190 TFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYLL--SNSMDN 247
Query: 441 QLRLYDIRL---RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497
+R++DIR ++ + F + E L+ SWS DG I +GSAD ++++D
Sbjct: 248 SVRVWDIRPFAPKERCVKIFQGNVHNFEKN--LLRCSWSADGSKIAAGSADRFVYIWDT- 304
Query: 498 YSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
+ + + H V + +H P+++S SSD + + +I
Sbjct: 305 -TTRRIVYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYIGEI 346
>TAIR|locus:2154438 [details] [associations]
symbol:AT5G23430 "AT5G23430" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 InterPro:IPR026962 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0051013 GO:GO:0005874
GO:GO:0080008 EMBL:AB018110 EMBL:BT002053 IPI:IPI00519668
IPI:IPI00532083 RefSeq:NP_197734.2 RefSeq:NP_851064.1
UniGene:At.45963 ProteinModelPortal:Q8H0T9 SMR:Q8H0T9 IntAct:Q8H0T9
PaxDb:Q8H0T9 PRIDE:Q8H0T9 EnsemblPlants:AT5G23430.1 GeneID:832409
KEGG:ath:AT5G23430 GeneFarm:2999 TAIR:At5g23430
HOGENOM:HOG000008039 InParanoid:Q8H0T9 OMA:DFKCHEG PhylomeDB:Q8H0T9
ProtClustDB:CLSN2717628 Genevestigator:Q8H0T9 GermOnline:AT5G23430
GO:GO:0008352 HAMAP:MF_03022 PANTHER:PTHR19845 Uniprot:Q8H0T9
Length = 837
Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
Identities = 53/197 (26%), Positives = 94/197 (47%)
Query: 344 TGGSDHAVVLWSERDAEDSWKPKA-LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF- 401
TGG DH V LW+ KP A L HSS + V +++++AGA I
Sbjct: 34 TGGEDHKVNLWA------IGKPNAILSLYGHSSGIDSVT-FDASEVLVAAGAASGTIKLW 86
Query: 402 ---DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458
+A + R H+ S C+SV +P F F +G+ L+++DIR + IH +
Sbjct: 87 DLEEAKIVRTLTGHR--SNCISVDFHP--FGEFFA-SGSLDTNLKIWDIRKKGC-IHTY- 139
Query: 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV 518
+ + + L ++PDG ++ SG D ++ ++D+ +A K ++H+ ++
Sbjct: 140 --KGHTRGVNVL---RFTPDGRWVVSGGEDNIVKVWDL--TAGKLLTEFKSHEGQIQSLD 192
Query: 519 WHYSHPLLISISSDLNI 535
+H LL + S+D +
Sbjct: 193 FHPHEFLLATGSADRTV 209
>TAIR|locus:2150788 [details] [associations]
symbol:AT5G08390 "AT5G08390" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0010090
"trichome morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0042546 "cell
wall biogenesis" evidence=RCA] [GO:0044036 "cell wall macromolecule
metabolic process" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0050665 "hydrogen peroxide biosynthetic process"
evidence=RCA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 InterPro:IPR026962 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002688 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0051013 GO:GO:0080008
GO:GO:0008352 PANTHER:PTHR19845 OMA:YWERNDI IPI:IPI00533677
RefSeq:NP_568194.2 UniGene:At.10141 UniGene:At.72630
ProteinModelPortal:F4KB17 SMR:F4KB17 PRIDE:F4KB17
EnsemblPlants:AT5G08390.1 GeneID:830737 KEGG:ath:AT5G08390
Uniprot:F4KB17
Length = 839
Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
Identities = 56/196 (28%), Positives = 92/196 (46%)
Query: 344 TGGSDHAVVLWSERDAEDSWKPKA-LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFD 402
TGG DH V LW+ KP A L HSS + V + +V + A I +D
Sbjct: 34 TGGEDHKVNLWA------IGKPNAILSLYGHSSGIDSVTFDASEGLVAAGAASGTIKLWD 87
Query: 403 ---AGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459
A V R H+ S C+SV +P F F +G+ L+++DIR + IH +
Sbjct: 88 LEEAKVVRTLTGHR--SNCVSVNFHP--FGEFFA-SGSLDTNLKIWDIRKKGC-IHTY-- 139
Query: 460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW 519
+ + + L ++PDG +I SG D V+ ++D+ +A K ++H+ ++ +
Sbjct: 140 -KGHTRGVNVL---RFTPDGRWIVSGGEDNVVKVWDL--TAGKLLHEFKSHEGKIQSLDF 193
Query: 520 HYSHPLLISISSDLNI 535
H LL + S+D +
Sbjct: 194 HPHEFLLATGSADKTV 209
>DICTYBASE|DDB_G0271788 [details] [associations]
symbol:wdr57 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 dictyBase:DDB_G0271788
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GenomeReviews:CM000151_GR GO:GO:0005681 EMBL:AAFI02000006
GO:GO:0000398 KO:K12857 OMA:HAGSVNE HSSP:P61964 RefSeq:XP_645454.1
ProteinModelPortal:Q55AR8 STRING:Q55AR8 EnsemblProtists:DDB0233518
GeneID:8618082 KEGG:ddi:DDB_G0271788 Uniprot:Q55AR8
Length = 355
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 59/265 (22%), Positives = 104/265 (39%)
Query: 279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE 338
++ W N +++A T D I V + NK G + H G++NS
Sbjct: 110 ELHWSTDSNEIYTACT----DKSIGVWDSNK--GELIKRI---REH-SGVVNSCCPARRG 159
Query: 339 NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRI 398
P A+G D + ++ R + H H V V +++ G D I
Sbjct: 160 PPLVASGSDDRSARIFDTRSKGST------HLFQHKYPVTSVCFSDASDQLITGGIDNVI 213
Query: 399 IGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR---QTEIH 455
+D + D + + S ++ + + + + +++DIR I
Sbjct: 214 RVWDIR-NQEDPLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIK 272
Query: 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF 515
F Q + E LI SWS DG I GS+D ++++D + + + H V
Sbjct: 273 TFNGAQNNFEKN--LIKSSWSIDGRRIGCGSSDRQVYIWDT--NTKQLQYCLPGHSGTVN 328
Query: 516 KAVWHYSHPLLISISSDLNIGLHKI 540
+ +H + P++ S SSD I L +I
Sbjct: 329 EVTFHPNEPIIASCSSDKTIYLGEI 353
>UNIPROTKB|Q96DI7 [details] [associations]
symbol:SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa
protein" species:9606 "Homo sapiens" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=NAS] [GO:0000375 "RNA splicing,
via transesterification reactions" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005682 "U5 snRNP"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005737 GO:GO:0005654
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
Reactome:REACT_1675 GO:GO:0005682 GO:GO:0000398 GO:GO:0071013
HOGENOM:HOG000091644 KO:K12857 GO:GO:0005732 EMBL:AL451070
EMBL:AC114495 CTD:9410 HOVERGEN:HBG105197 OrthoDB:EOG4JM7Q0
EMBL:AF090988 EMBL:BC001494 EMBL:AF083383 IPI:IPI00940685
RefSeq:NP_004805.2 UniGene:Hs.33962 ProteinModelPortal:Q96DI7
SMR:Q96DI7 IntAct:Q96DI7 MINT:MINT-1410013 STRING:Q96DI7
PhosphoSite:Q96DI7 DMDM:67462075 PaxDb:Q96DI7 PeptideAtlas:Q96DI7
PRIDE:Q96DI7 DNASU:9410 Ensembl:ENST00000263694 GeneID:9410
KEGG:hsa:9410 UCSC:uc001bso.3 GeneCards:GC01M031732 HGNC:HGNC:30857
HPA:HPA026527 HPA:HPA027345 MIM:607797 neXtProt:NX_Q96DI7
PharmGKB:PA164726132 InParanoid:Q96DI7 PhylomeDB:Q96DI7
ChiTaRS:SNRNP40 GenomeRNAi:9410 NextBio:35252 ArrayExpress:Q96DI7
Bgee:Q96DI7 CleanEx:HS_SNRNP40 Genevestigator:Q96DI7
GermOnline:ENSG00000060688 Uniprot:Q96DI7
Length = 357
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 44/200 (22%), Positives = 87/200 (43%)
Query: 344 TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA 403
TG D V LW R K A+ ++ V+ V ++S G D I +D
Sbjct: 169 TGSDDGTVKLWDIR------KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 222
Query: 404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL---RQTEIHAFGWK 460
+ + + + ++ L + + + + +R++D+R ++ + F
Sbjct: 223 RQNKLTYTMRGHADSVTGLSLSSEGSYLL--SNAMDNTVRVWDVRPFAPKERCVKIFQGN 280
Query: 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520
+ E L+ SWSPDG I +GSAD ++++D ++ + + H + + +H
Sbjct: 281 VHNFEKN--LLRCSWSPDGSKIAAGSADRFVYVWDT--TSRRILYKLPGHAGSINEVAFH 336
Query: 521 YSHPLLISISSDLNIGLHKI 540
P++IS SSD + + +I
Sbjct: 337 PDEPIIISASSDKRLYMGEI 356
>UNIPROTKB|Q2HJH6 [details] [associations]
symbol:SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa
protein" species:9913 "Bos taurus" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006397 GO:GO:0005681
HOGENOM:HOG000091644 KO:K12857 EMBL:BC105383 IPI:IPI00687479
RefSeq:NP_001039847.1 UniGene:Bt.59135 ProteinModelPortal:Q2HJH6
STRING:Q2HJH6 PRIDE:Q2HJH6 GeneID:534645 KEGG:bta:534645 CTD:9410
HOVERGEN:HBG105197 InParanoid:Q2HJH6 OrthoDB:EOG4JM7Q0
NextBio:20876486 Uniprot:Q2HJH6
Length = 358
Score = 118 (46.6 bits), Expect = 0.00049, P = 0.00049
Identities = 43/200 (21%), Positives = 87/200 (43%)
Query: 344 TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA 403
TG D V LW R K A+ ++ V+ V ++S G D I +D
Sbjct: 170 TGSDDGTVKLWDIR------KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
Query: 404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL---RQTEIHAFGWK 460
+ + + + ++ L + + + + +R++D+R ++ + F
Sbjct: 224 RQNKLTYTMRGHADSVTGLSLSSEGSYLL--SNAMDNTVRVWDVRPFAPKERCVRIFQGN 281
Query: 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520
+ E L+ SWSPDG I +GSAD ++++D ++ + + H + + +H
Sbjct: 282 VHNFEKN--LLRCSWSPDGSKIAAGSADRFVYVWDT--TSRRILYKLPGHAGSINEVAFH 337
Query: 521 YSHPLLISISSDLNIGLHKI 540
P+++S SSD + + +I
Sbjct: 338 PDEPIILSASSDKRLYMGEI 357
>TAIR|locus:2050372 [details] [associations]
symbol:FVE species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0009826 "unidimensional
cell growth" evidence=IMP] [GO:0009908 "flower development"
evidence=IMP] [GO:0009965 "leaf morphogenesis" evidence=IMP]
[GO:0010090 "trichome morphogenesis" evidence=IMP] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0010224 "response to UV-B" evidence=IEP]
[GO:0046872 "metal ion binding" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005829 GO:GO:0030154
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0046872
GO:GO:0006281 eggNOG:COG2319 GO:GO:0006351 GO:GO:0016568
EMBL:AC005917 GO:GO:0009908 GO:GO:0010224 KO:K10752
InterPro:IPR022052 Pfam:PF12265 GO:GO:0080008 HOGENOM:HOG000160330
EMBL:AF498101 EMBL:AF498102 EMBL:AY849994 EMBL:AY059799
EMBL:AY057655 EMBL:AY081447 EMBL:AF028711 EMBL:Z37286 EMBL:Z37287
IPI:IPI00539247 PIR:G84577 RefSeq:NP_565456.2 UniGene:At.20032
ProteinModelPortal:O22607 SMR:O22607 DIP:DIP-59614N STRING:O22607
PaxDb:O22607 PRIDE:O22607 EnsemblPlants:AT2G19520.1 GeneID:816471
KEGG:ath:AT2G19520 GeneFarm:2818 TAIR:At2g19520 InParanoid:O22607
OMA:CIRELEQ PhylomeDB:O22607 ProtClustDB:CLSN2918036
Genevestigator:O22607 GermOnline:AT2G19520 Uniprot:O22607
Length = 507
Score = 103 (41.3 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 47/187 (25%), Positives = 84/187 (44%)
Query: 365 PKALHRNLHSSAVMGVA-GMQQKQIVLSAGADKRIIGFDAGVG-----RADFKHQIESKC 418
P+ ++ H V VA Q S G D +I +DA G + + H + C
Sbjct: 284 PRGVYHG-HEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHC 342
Query: 419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIR-LRQTEIHAFGWKQESSESQSALINQSWSP 477
+ NP D NL + TG+ +RL+D R L + + +K E ++ A++ WSP
Sbjct: 343 VDW--NPHDDNLIL--TGSADNTVRLFDRRKLTANGVGSPIYKFEGHKA--AVLCVQWSP 396
Query: 478 DGLYITSGSA-DPVIHLFDIRYSANKPSQSIRA----------HQKRVFKAVWHYSHP-L 525
D + SA D +++++D + K ++ ++ H+ +V W+ S P
Sbjct: 397 DKSSVFGSSAEDGLLNIWDYDRVSKKSDRAAKSPAGLFFQHAGHRDKVVDFHWNASDPWT 456
Query: 526 LISISSD 532
++S+S D
Sbjct: 457 IVSVSDD 463
Score = 62 (26.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP------HVKGIINSIIFLPW 337
PQ + + + HT DS D I + + A + + +P H ++ P
Sbjct: 174 PQNSKIVATHT-DSPDVLIWDVETQPNR-HAVLGAANSRPDLILTGHQDNAEFALAMCPT 231
Query: 338 ENPCFATGGSDHAVVLWSERD 358
E P +GG D +VVLWS +D
Sbjct: 232 E-PFVLSGGKDKSVVLWSIQD 251
>MGI|MGI:2141989 [details] [associations]
symbol:Grwd1 "glutamate-rich WD repeat containing 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:2141989 GO:GO:0005730
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
InterPro:IPR022052 Pfam:PF12265 EMBL:AC149053 CTD:83743
GeneTree:ENSGT00550000075124 HOGENOM:HOG000036730
HOVERGEN:HBG051847 KO:K14848 OMA:NRLMMLR EMBL:AB001539
EMBL:CH466603 EMBL:BC008121 IPI:IPI00123005 RefSeq:NP_700468.2
UniGene:Mm.274847 ProteinModelPortal:Q810D6 STRING:Q810D6
PhosphoSite:Q810D6 PaxDb:Q810D6 PRIDE:Q810D6
Ensembl:ENSMUST00000107723 Ensembl:ENSMUST00000131384 GeneID:101612
KEGG:mmu:101612 InParanoid:Q810D6 NextBio:355042 CleanEx:MM_GRWD1
Genevestigator:Q810D6 GermOnline:ENSMUSG00000053801 Uniprot:Q810D6
Length = 446
Score = 123 (48.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 49/172 (28%), Positives = 80/172 (46%)
Query: 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI 332
H R ED+ W P +++F++ +AD+ I + ++ G+AC+ L G +N I
Sbjct: 260 HTRSVEDLQWSPTEDTVFASCSADAS---IRIWDIRAAPGKACM--LTTATAHDGDVNVI 314
Query: 333 IFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA 392
+ E P +GG D A+ +W R + S P A + H + V V Q V +A
Sbjct: 315 SWSRRE-PFLLSGGDDGALKVWDLRQFK-SGSPVATFKQ-HMAPVTSVEWHPQDSGVFAA 371
Query: 393 -GADKRIIGFDAGVGRADFKHQIESKC-MSVLPNPCDFNLFMVQTGTPGRQL 442
GAD +I +D V R + E+ ++ LP LF+ Q T ++L
Sbjct: 372 SGADNQITQWDLAVERDPESGETETDPGLAALPQQL---LFVHQGETDLKEL 420
Score = 39 (18.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 60 AEKRLEDSQS-KLARLRCQDNVVSSRSSPANGTN 92
A + E +QS +L LR N+ +R SP+ G++
Sbjct: 91 AGTQAESAQSNRLMMLRMH-NLHGTRPSPSEGSD 123
>UNIPROTKB|B8YE10 [details] [associations]
symbol:TBL1Y "Transducin (Beta)-like 1Y-linked"
species:9544 "Macaca mulatta" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005876 "spindle microtubule" evidence=ISS] [GO:0006508
"proteolysis" evidence=ISS] [GO:0007605 "sensory perception of
sound" evidence=ISS] [GO:0008013 "beta-catenin binding"
evidence=ISS] [GO:0017053 "transcriptional repressor complex"
evidence=ISS] [GO:0042393 "histone binding" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR006594
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
PROSITE:PS50896 SMART:SM00320 SMART:SM00667 GO:GO:0017053
GO:GO:0003714 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0045944 GO:GO:0006508 GO:GO:0000122 GO:GO:0007605
InterPro:IPR013720 Pfam:PF08513 GO:GO:0042393 GO:GO:0008013
GO:GO:0060070 GO:GO:0005876 KO:K04508 HOGENOM:HOG000220902
HOVERGEN:HBG050240 OrthoDB:EOG412M5M CTD:90665 EMBL:FJ527023
RefSeq:NP_001138540.1 UniGene:Mmu.17760 ProteinModelPortal:B8YE10
STRING:B8YE10 GeneID:100270702 KEGG:mcc:100270702 NextBio:19970520
Uniprot:B8YE10
Length = 520
Score = 120 (47.3 bits), Expect = 0.00054, P = 0.00054
Identities = 60/261 (22%), Positives = 101/261 (38%)
Query: 281 AWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTF-----LDDKPHVKGIINSIIFL 335
AW+P + L S SGDS + NLN+ RA + + H + L
Sbjct: 182 AWNPVSDLLASG----SGDSTARIWNLNENGSRASTQLVLRHCIREGGHDVPSNKDVTSL 237
Query: 336 PW--ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG 393
W + ATG D +W+E S L + H + + ++ +LSAG
Sbjct: 238 DWNSDGTLLATGSYDGFARIWTENGNLAS----TLGQ--HKGPIFALKWNKKGNYILSAG 291
Query: 394 ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR-QT 452
DK I +DA G A K Q L N T + ++ RL
Sbjct: 292 VDKTTIIWDAHTGEA--KQQFPFHSAPALDVDWQNNTTFASCST---DMCIHVCRLGCDR 346
Query: 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK 512
+ F Q + +A+ W P G+ + S S D + ++ ++ A +++AH+K
Sbjct: 347 PVKTF---QGHTNEVNAI---KWDPSGMLLASCSDDMTLKIWSMKQDACV--HNLQAHRK 398
Query: 513 RVFKAVWHYSHPLLISISSDL 533
++ W + P + +S +
Sbjct: 399 EIYTIKWSPTGPTTSNPNSSI 419
>UNIPROTKB|Q9BQ67 [details] [associations]
symbol:GRWD1 "Glutamate-rich WD repeat-containing protein
1" species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005737 GO:GO:0005730 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 InterPro:IPR022052 Pfam:PF12265
CTD:83743 HOGENOM:HOG000036730 HOVERGEN:HBG051847 KO:K14848
OMA:NRLMMLR OrthoDB:EOG4CG084 EMBL:AF337808 EMBL:BC002440
EMBL:AB075822 IPI:IPI00027831 RefSeq:NP_113673.3 UniGene:Hs.400625
ProteinModelPortal:Q9BQ67 SMR:Q9BQ67 IntAct:Q9BQ67
MINT:MINT-1148872 STRING:Q9BQ67 PhosphoSite:Q9BQ67 DMDM:18202731
SWISS-2DPAGE:Q9BQ67 PaxDb:Q9BQ67 PeptideAtlas:Q9BQ67 PRIDE:Q9BQ67
DNASU:83743 Ensembl:ENST00000253237 GeneID:83743 KEGG:hsa:83743
UCSC:uc002pjd.2 GeneCards:GC19P048949 H-InvDB:HIX0080107
HGNC:HGNC:21270 HPA:HPA042643 MIM:610597 neXtProt:NX_Q9BQ67
PharmGKB:PA134897548 InParanoid:Q9BQ67 PhylomeDB:Q9BQ67
GenomeRNAi:83743 NextBio:72761 ArrayExpress:Q9BQ67 Bgee:Q9BQ67
CleanEx:HS_GRWD1 Genevestigator:Q9BQ67 GermOnline:ENSG00000105447
Uniprot:Q9BQ67
Length = 446
Score = 119 (46.9 bits), Expect = 0.00055, P = 0.00055
Identities = 41/136 (30%), Positives = 64/136 (47%)
Query: 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI 332
H R ED+ W P N++F++ +AD+ I + ++ +AC+ L G +N I
Sbjct: 260 HTRSVEDLQWSPTENTVFASCSADAS---IRIWDIRAAPSKACM--LTTATAHDGDVNVI 314
Query: 333 IFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA 392
+ E P +GG D A+ +W R + S P A + H + V V Q V +A
Sbjct: 315 SWSRRE-PFLLSGGDDGALKIWDLRQFK-SGSPVATFKQ-HVAPVTSVEWHPQDSGVFAA 371
Query: 393 -GADKRIIGFDAGVGR 407
GAD +I +D V R
Sbjct: 372 SGADHQITQWDLAVER 387
>UNIPROTKB|F1MLP7 [details] [associations]
symbol:SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa
protein" species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071013
OMA:HAGSVNE GeneTree:ENSGT00690000101787 IPI:IPI00687479
UniGene:Bt.59135 EMBL:DAAA02006263 ProteinModelPortal:F1MLP7
Ensembl:ENSBTAT00000022372 Uniprot:F1MLP7
Length = 358
Score = 117 (46.2 bits), Expect = 0.00064, P = 0.00064
Identities = 43/200 (21%), Positives = 87/200 (43%)
Query: 344 TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA 403
TG D V LW R K A+ ++ V+ V ++S G D I +D
Sbjct: 170 TGSDDGTVKLWDIR------KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
Query: 404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL---RQTEIHAFGWK 460
+ + + + ++ L + + + + +R++D+R ++ + F
Sbjct: 224 RQNKLTYTMRGHADSVTGLSLSSEGSYLL--SNAMDNTVRVWDVRPFAPKERCVKIFQGN 281
Query: 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520
+ E L+ SWSPDG I +GSAD ++++D ++ + + H + + +H
Sbjct: 282 VHNFEKN--LLRCSWSPDGSKIAAGSADRFVYVWDT--TSRRILYKLPGHAGSINEVAFH 337
Query: 521 YSHPLLISISSDLNIGLHKI 540
P+++S SSD + + +I
Sbjct: 338 PDEPIILSASSDKRLYMGEI 357
>UNIPROTKB|F1SVA6 [details] [associations]
symbol:SNRNP40 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071013 KO:K12857
OMA:HAGSVNE GeneTree:ENSGT00690000101787 EMBL:FP565415
RefSeq:XP_003356314.1 ProteinModelPortal:F1SVA6
Ensembl:ENSSSCT00000003991 GeneID:100624754 KEGG:ssc:100624754
Uniprot:F1SVA6
Length = 358
Score = 117 (46.2 bits), Expect = 0.00064, P = 0.00064
Identities = 43/200 (21%), Positives = 87/200 (43%)
Query: 344 TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA 403
TG D V LW R K A+ ++ V+ V ++S G D I +D
Sbjct: 170 TGSDDGTVKLWDIR------KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
Query: 404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL---RQTEIHAFGWK 460
+ + + + ++ L + + + + +R++D+R ++ + F
Sbjct: 224 RQNKLTYTMRGHADSVTGLSLSSEGSYLL--SNAMDNTVRVWDVRPFAPKERCVKIFQGN 281
Query: 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520
+ E L+ SWSPDG I +GSAD ++++D ++ + + H + + +H
Sbjct: 282 VHNFEKN--LLRCSWSPDGSKIAAGSADRFVYVWDT--TSRRILYKLPGHAGSINEVAFH 337
Query: 521 YSHPLLISISSDLNIGLHKI 540
P+++S SSD + + +I
Sbjct: 338 PDEPIILSASSDKRLYMGEI 357
>MGI|MGI:1913835 [details] [associations]
symbol:Snrnp40 "small nuclear ribonucleoprotein 40 (U5)"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:1913835 GO:GO:0005737
GO:GO:0008380 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006397 GO:GO:0071013 HOGENOM:HOG000091644 KO:K12857
OMA:HAGSVNE GeneTree:ENSGT00690000101787 CTD:9410
HOVERGEN:HBG105197 OrthoDB:EOG4JM7Q0 EMBL:AK002371 EMBL:AK169605
EMBL:BC058365 IPI:IPI00461621 RefSeq:NP_079921.2 UniGene:Mm.423019
ProteinModelPortal:Q6PE01 SMR:Q6PE01 STRING:Q6PE01
PhosphoSite:Q6PE01 PaxDb:Q6PE01 PRIDE:Q6PE01
Ensembl:ENSMUST00000105994 GeneID:66585 KEGG:mmu:66585
UCSC:uc008uzf.1 InParanoid:Q6PE01 NextBio:322070 Bgee:Q6PE01
Genevestigator:Q6PE01 Uniprot:Q6PE01
Length = 358
Score = 117 (46.2 bits), Expect = 0.00064, P = 0.00064
Identities = 43/200 (21%), Positives = 87/200 (43%)
Query: 344 TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA 403
TG D V LW R K A+ ++ V+ V ++S G D I +D
Sbjct: 170 TGSDDGTVKLWDIR------KKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
Query: 404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL---RQTEIHAFGWK 460
+ + + + ++ L + + + + +R++D+R ++ + F
Sbjct: 224 RQNKLTYTMRGHADSVTGLSLSSEGSYLL--SNAMDNTVRVWDVRPFAPKERCVKIFQGN 281
Query: 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520
+ E L+ SWSPDG I +GSAD ++++D ++ + + H + + +H
Sbjct: 282 VHNFEKN--LLRCSWSPDGSKIAAGSADRFVYVWDT--TSRRVLYKLPGHAGSINEVAFH 337
Query: 521 YSHPLLISISSDLNIGLHKI 540
P+++S SSD + + +I
Sbjct: 338 PDEPIILSASSDKRLYMGEI 357
>UNIPROTKB|F1RL85 [details] [associations]
symbol:GRWD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005737 GO:GO:0005730 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 InterPro:IPR022052 Pfam:PF12265
GeneTree:ENSGT00550000075124 KO:K14848 OMA:NRLMMLR EMBL:FP102301
RefSeq:XP_003127319.1 UniGene:Ssc.24214 Ensembl:ENSSSCT00000003475
GeneID:100521273 KEGG:ssc:100521273 Uniprot:F1RL85
Length = 445
Score = 118 (46.6 bits), Expect = 0.00071, P = 0.00071
Identities = 39/136 (28%), Positives = 64/136 (47%)
Query: 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI 332
H R ED+ W P +++F++ +AD+ I + ++ +AC+ H G +N +
Sbjct: 259 HTRSVEDLQWSPTEDTVFASCSADAS---IRIWDIRAAPSKACM-LTTPAAH-NGDVN-V 312
Query: 333 IFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA 392
I + P +GG D A+ +W R + S P A + H + V V Q V +A
Sbjct: 313 ISWSRQEPFLLSGGDDGALKVWDLRQFK-SGSPVATFKQ-HVAPVTSVEWHPQDSGVFAA 370
Query: 393 -GADKRIIGFDAGVGR 407
GAD +I +D V R
Sbjct: 371 SGADNQITQWDLAVER 386
>RGD|1310649 [details] [associations]
symbol:Grwd1 "glutamate-rich WD repeat containing 1"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 RGD:1310649 GO:GO:0005737
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
InterPro:IPR022052 Pfam:PF12265 CTD:83743 HOGENOM:HOG000036730
HOVERGEN:HBG051847 KO:K14848 OrthoDB:EOG4CG084 EMBL:BC083883
IPI:IPI00367307 RefSeq:NP_001012067.1 UniGene:Rn.33523
ProteinModelPortal:Q5XI13 STRING:Q5XI13 PRIDE:Q5XI13 GeneID:308592
KEGG:rno:308592 UCSC:RGD:1310649 NextBio:659230 ArrayExpress:Q5XI13
Genevestigator:Q5XI13 GermOnline:ENSRNOG00000021058 Uniprot:Q5XI13
Length = 445
Score = 118 (46.6 bits), Expect = 0.00071, P = 0.00071
Identities = 48/172 (27%), Positives = 79/172 (45%)
Query: 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI 332
H R ED+ W P +++F++ +AD+ I + ++ G+AC+ L G +N I
Sbjct: 259 HTRSVEDLQWSPTEDTVFASCSADAS---IRIWDIRAAPGKACM--LTTAAAHDGDVNVI 313
Query: 333 IFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA 392
+ E P +GG D + +W R + S P A + H + V V Q V +A
Sbjct: 314 SWSRRE-PFLLSGGDDGTLKVWDLRQFK-SGSPVATFKQ-HVAPVTSVEWHPQDSGVFAA 370
Query: 393 -GADKRIIGFDAGVGRADFKHQIESKC-MSVLPNPCDFNLFMVQTGTPGRQL 442
GAD +I +D V R + E+ ++ LP LF+ Q T ++L
Sbjct: 371 SGADNQITQWDLAVERDPESGETETDPGLAALPQQL---LFVHQGETDLKEL 419
>TAIR|locus:2089303 [details] [associations]
symbol:AT3G16650 "AT3G16650" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
EMBL:AB022217 GO:GO:0080008 HOGENOM:HOG000207595
ProtClustDB:CLSN2685622 EMBL:X82826 EMBL:AY054181 EMBL:BT020378
IPI:IPI00521576 RefSeq:NP_566557.1 UniGene:At.104
ProteinModelPortal:Q39190 SMR:Q39190 IntAct:Q39190 STRING:Q39190
EnsemblPlants:AT3G16650.1 GeneID:820917 KEGG:ath:AT3G16650
GeneFarm:2851 TAIR:At3g16650 InParanoid:Q39190 OMA:HKKTVRA
PhylomeDB:Q39190 Genevestigator:Q39190 GermOnline:AT3G16650
Uniprot:Q39190
Length = 479
Score = 118 (46.6 bits), Expect = 0.00080, P = 0.00080
Identities = 60/212 (28%), Positives = 90/212 (42%)
Query: 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK 386
G + S+ F P N F TG +D + +W A K L H V G+A +
Sbjct: 171 GWVRSVAFDP-SNEWFCTGSADRTIKIWDV--ATGVLK---LTLTGHIGQVRGLAVSNRH 224
Query: 387 QIVLSAGADKRIIGFDAG---VGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLR 443
+ SAG DK++ +D V R+ H C+++ P L +V TG R
Sbjct: 225 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPT-----LDVVLTGGRDSVCR 279
Query: 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP 503
++DIR T++ F +S + S L P + +GS D I +D+RY K
Sbjct: 280 VWDIR---TKMQIFVLPHDS-DVFSVLAR----PTDPQVITGSHDSTIKFWDLRYG--KS 329
Query: 504 SQSIRAHQKRVFKAVWHYSHPLLISISSDLNI 535
+I H+K V H +S S+D NI
Sbjct: 330 MATITNHKKTVRAMALHPKENDFVSASAD-NI 360
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.129 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 540 520 0.00089 119 3 11 23 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 631 (67 KB)
Total size of DFA: 316 KB (2160 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.62u 0.10s 53.72t Elapsed: 00:00:03
Total cpu time: 53.62u 0.10s 53.72t Elapsed: 00:00:03
Start: Tue May 21 08:49:32 2013 End: Tue May 21 08:49:35 2013