Query 009203
Match_columns 540
No_of_seqs 756 out of 4067
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 21:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 7.5E-52 1.6E-56 363.3 30.8 326 146-539 106-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-48 2.3E-53 343.5 27.2 291 218-540 110-438 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 5E-47 1.1E-51 337.3 24.2 283 220-539 172-458 (459)
4 KOG0286 G-protein beta subunit 100.0 5.7E-45 1.2E-49 309.4 34.9 293 217-539 49-343 (343)
5 KOG0318 WD40 repeat stress pro 100.0 2.1E-44 4.6E-49 328.9 37.7 366 140-540 132-559 (603)
6 KOG0272 U4/U6 small nuclear ri 100.0 5.2E-43 1.1E-47 311.7 22.3 263 200-495 189-458 (459)
7 KOG0286 G-protein beta subunit 100.0 6.2E-40 1.3E-44 278.8 32.0 287 149-495 49-343 (343)
8 KOG0315 G-protein beta subunit 100.0 5.4E-40 1.2E-44 272.9 27.0 276 236-540 10-287 (311)
9 KOG0279 G protein beta subunit 100.0 3E-39 6.6E-44 273.0 31.2 292 217-540 9-312 (315)
10 KOG0279 G protein beta subunit 100.0 4.4E-39 9.5E-44 272.0 31.1 292 149-497 9-313 (315)
11 KOG0273 Beta-transducin family 100.0 3.6E-38 7.7E-43 284.6 33.7 321 153-540 176-522 (524)
12 KOG0284 Polyadenylation factor 100.0 4.9E-40 1.1E-44 291.5 19.8 280 223-539 96-378 (464)
13 KOG0295 WD40 repeat-containing 100.0 2.9E-39 6.2E-44 282.7 23.9 290 217-539 102-404 (406)
14 KOG0285 Pleiotropic regulator 100.0 7.6E-39 1.6E-43 279.2 25.3 288 213-539 141-437 (460)
15 KOG0645 WD40 repeat protein [G 100.0 1.8E-37 3.9E-42 261.2 32.0 292 217-540 8-310 (312)
16 KOG0282 mRNA splicing factor [ 100.0 2E-39 4.4E-44 293.8 20.8 290 217-539 208-503 (503)
17 KOG0319 WD40-repeat-containing 100.0 1.5E-37 3.2E-42 295.3 33.3 374 146-539 95-617 (775)
18 KOG0296 Angio-associated migra 100.0 1.5E-37 3.2E-42 272.2 30.5 329 146-540 55-397 (399)
19 KOG0265 U5 snRNP-specific prot 100.0 1.7E-37 3.7E-42 265.0 26.9 288 217-537 41-334 (338)
20 KOG0293 WD40 repeat-containing 100.0 7.2E-38 1.6E-42 278.0 24.1 292 217-539 218-511 (519)
21 KOG0315 G-protein beta subunit 100.0 1.2E-36 2.6E-41 253.0 29.2 284 200-520 12-309 (311)
22 KOG0291 WD40-repeat-containing 100.0 1.6E-35 3.5E-40 281.9 38.9 362 143-540 133-549 (893)
23 KOG0263 Transcription initiati 100.0 2.6E-37 5.6E-42 296.8 22.3 282 207-540 366-648 (707)
24 KOG0295 WD40 repeat-containing 100.0 4.7E-36 1E-40 262.6 27.3 279 152-496 105-405 (406)
25 KOG0273 Beta-transducin family 100.0 2.8E-36 6.1E-41 272.4 26.2 290 221-540 176-481 (524)
26 KOG0281 Beta-TrCP (transducin 100.0 3.3E-37 7.1E-42 268.0 18.3 273 222-540 196-476 (499)
27 KOG0266 WD40 repeat-containing 100.0 1.9E-35 4.1E-40 292.4 32.5 295 210-540 145-453 (456)
28 KOG0645 WD40 repeat protein [G 100.0 8E-35 1.7E-39 245.2 31.0 294 148-497 7-311 (312)
29 cd00200 WD40 WD40 domain, foun 100.0 1E-34 2.2E-39 273.6 35.8 285 218-539 4-289 (289)
30 KOG0319 WD40-repeat-containing 100.0 2.6E-35 5.6E-40 280.1 27.4 318 199-540 118-534 (775)
31 KOG0284 Polyadenylation factor 100.0 6.4E-36 1.4E-40 265.4 21.6 267 200-499 110-382 (464)
32 KOG0318 WD40 repeat stress pro 100.0 2.5E-33 5.4E-38 256.7 39.1 373 148-540 52-516 (603)
33 KOG0291 WD40-repeat-containing 100.0 1.9E-33 4.1E-38 267.8 38.9 357 151-540 51-507 (893)
34 KOG0313 Microtubule binding pr 100.0 4.6E-35 1E-39 257.8 25.3 291 220-539 102-416 (423)
35 KOG0263 Transcription initiati 100.0 2.2E-35 4.7E-40 283.6 23.6 271 150-448 373-649 (707)
36 KOG0278 Serine/threonine kinas 100.0 6.4E-36 1.4E-40 248.8 16.6 283 220-540 11-296 (334)
37 PLN00181 protein SPA1-RELATED; 100.0 1.5E-33 3.2E-38 300.1 38.7 297 219-540 479-792 (793)
38 KOG0316 Conserved WD40 repeat- 100.0 1.2E-33 2.7E-38 233.2 25.4 283 217-538 11-296 (307)
39 KOG0288 WD40 repeat protein Ti 100.0 4.9E-35 1.1E-39 260.3 18.1 288 218-539 170-459 (459)
40 KOG0275 Conserved WD40 repeat- 100.0 1.1E-34 2.4E-39 250.2 19.0 295 220-539 210-507 (508)
41 KOG0276 Vesicle coat complex C 100.0 1.8E-33 3.9E-38 262.5 28.3 287 217-537 7-295 (794)
42 KOG0265 U5 snRNP-specific prot 100.0 2.5E-33 5.4E-38 239.6 26.5 280 148-494 40-335 (338)
43 KOG0292 Vesicle coat complex C 100.0 1.2E-33 2.6E-38 273.3 27.2 304 155-540 9-320 (1202)
44 KOG0281 Beta-TrCP (transducin 100.0 8.3E-35 1.8E-39 253.1 17.0 261 201-498 210-478 (499)
45 KOG0296 Angio-associated migra 100.0 5.4E-33 1.2E-37 243.6 27.0 291 217-539 58-354 (399)
46 KOG0268 Sof1-like rRNA process 100.0 1.7E-34 3.7E-39 252.6 17.1 280 219-539 62-343 (433)
47 KOG0306 WD40-repeat-containing 100.0 2E-31 4.3E-36 254.0 35.8 358 148-539 100-620 (888)
48 KOG0285 Pleiotropic regulator 100.0 1.7E-32 3.8E-37 239.6 26.0 268 201-498 166-440 (460)
49 KOG0643 Translation initiation 100.0 3.9E-32 8.4E-37 228.5 26.9 288 218-539 5-315 (327)
50 KOG0276 Vesicle coat complex C 100.0 7.8E-32 1.7E-36 251.6 29.7 277 152-492 10-294 (794)
51 KOG0266 WD40 repeat-containing 100.0 1.2E-31 2.5E-36 265.5 32.1 264 201-497 174-454 (456)
52 KOG0282 mRNA splicing factor [ 100.0 4.5E-33 9.9E-38 252.7 20.0 289 142-495 201-503 (503)
53 PLN00181 protein SPA1-RELATED; 100.0 4.9E-30 1.1E-34 273.2 46.6 270 200-496 497-792 (793)
54 KOG0277 Peroxisomal targeting 100.0 3.5E-32 7.7E-37 227.2 22.7 285 226-539 11-307 (311)
55 KOG0772 Uncharacterized conser 100.0 2.9E-32 6.4E-37 249.0 23.9 298 219-538 163-484 (641)
56 KOG0306 WD40-repeat-containing 100.0 5E-32 1.1E-36 258.0 26.4 286 219-539 369-662 (888)
57 KOG0640 mRNA cleavage stimulat 100.0 2.4E-32 5.2E-37 234.4 21.3 303 219-539 108-424 (430)
58 KOG1407 WD40 repeat protein [F 100.0 8.9E-31 1.9E-35 219.7 27.6 284 218-539 15-309 (313)
59 cd00200 WD40 WD40 domain, foun 100.0 3.1E-30 6.8E-35 243.0 35.0 281 149-495 3-289 (289)
60 KOG0289 mRNA splicing factor [ 100.0 3.1E-30 6.8E-35 231.1 31.7 268 200-540 233-505 (506)
61 KOG0278 Serine/threonine kinas 100.0 3.2E-32 6.8E-37 226.8 16.8 283 152-498 11-298 (334)
62 KOG0293 WD40 repeat-containing 100.0 4.8E-31 1E-35 234.7 24.1 265 200-498 238-514 (519)
63 KOG0292 Vesicle coat complex C 100.0 1.5E-31 3.3E-36 258.8 22.0 274 220-540 6-279 (1202)
64 KOG0310 Conserved WD40 repeat- 100.0 5.8E-31 1.2E-35 239.6 24.3 277 224-537 27-305 (487)
65 KOG0316 Conserved WD40 repeat- 100.0 2.1E-30 4.5E-35 214.2 25.3 259 201-497 32-299 (307)
66 KOG0283 WD40 repeat-containing 100.0 9.5E-31 2.1E-35 253.9 25.3 302 219-540 262-575 (712)
67 KOG0313 Microtubule binding pr 100.0 2.7E-30 5.8E-35 227.8 25.3 279 191-497 101-418 (423)
68 KOG0305 Anaphase promoting com 100.0 6.4E-30 1.4E-34 242.1 27.2 275 227-540 181-460 (484)
69 KOG0643 Translation initiation 100.0 9.7E-30 2.1E-34 214.1 24.5 279 200-498 24-318 (327)
70 KOG0300 WD40 repeat-containing 100.0 2.6E-29 5.6E-34 216.5 27.0 288 217-540 142-475 (481)
71 KOG1446 Histone H3 (Lys4) meth 100.0 2.1E-28 4.6E-33 211.7 32.4 284 219-538 10-300 (311)
72 KOG0973 Histone transcription 100.0 1.1E-29 2.4E-34 252.8 27.6 294 221-540 11-354 (942)
73 KOG0640 mRNA cleavage stimulat 100.0 1.3E-29 2.9E-34 217.6 22.6 272 200-497 126-426 (430)
74 KOG0647 mRNA export protein (c 100.0 5E-29 1.1E-33 213.5 25.8 280 221-532 25-315 (347)
75 KOG0772 Uncharacterized conser 100.0 1.4E-28 3E-33 225.1 28.5 297 149-495 161-485 (641)
76 KOG0288 WD40 repeat protein Ti 100.0 5.4E-30 1.2E-34 228.2 18.8 259 200-495 189-459 (459)
77 KOG0305 Anaphase promoting com 100.0 5.7E-29 1.2E-33 235.6 26.1 258 207-498 196-462 (484)
78 KOG0299 U3 snoRNP-associated p 100.0 2E-28 4.3E-33 221.4 27.3 289 219-529 138-443 (479)
79 KOG0274 Cdc4 and related F-box 100.0 1.8E-28 3.9E-33 241.5 27.9 271 222-540 207-481 (537)
80 PTZ00421 coronin; Provisional 100.0 1.1E-27 2.4E-32 235.9 32.9 277 224-522 21-314 (493)
81 KOG1063 RNA polymerase II elon 100.0 2.2E-27 4.7E-32 224.8 32.8 378 146-540 45-647 (764)
82 KOG1407 WD40 repeat protein [F 100.0 1.4E-28 3E-33 206.6 21.7 241 271-537 17-257 (313)
83 KOG0300 WD40 repeat-containing 100.0 3.9E-28 8.5E-33 209.2 24.8 275 200-498 162-477 (481)
84 KOG0277 Peroxisomal targeting 100.0 6.3E-29 1.4E-33 207.8 19.2 243 223-496 60-308 (311)
85 KOG0639 Transducin-like enhanc 100.0 9.7E-29 2.1E-33 225.3 21.1 289 219-540 415-703 (705)
86 KOG0641 WD40 repeat protein [G 100.0 7.5E-27 1.6E-31 192.0 30.1 297 222-540 31-348 (350)
87 KOG1036 Mitotic spindle checkp 100.0 2.7E-27 5.8E-32 203.9 28.2 273 222-530 12-293 (323)
88 KOG0274 Cdc4 and related F-box 100.0 9.7E-28 2.1E-32 236.4 28.1 262 200-507 220-490 (537)
89 KOG2096 WD40 repeat protein [G 100.0 3.5E-27 7.6E-32 203.6 27.9 296 218-538 81-399 (420)
90 PTZ00420 coronin; Provisional 100.0 4.8E-27 1E-31 232.2 32.7 252 242-523 50-318 (568)
91 KOG0264 Nucleosome remodeling 100.0 2.9E-28 6.3E-33 220.4 21.9 260 221-540 122-403 (422)
92 PTZ00420 coronin; Provisional 100.0 2.3E-27 4.9E-32 234.5 30.0 253 201-479 47-318 (568)
93 KOG1408 WD40 repeat protein [F 100.0 9.1E-28 2E-32 227.7 25.6 311 206-540 344-712 (1080)
94 KOG0310 Conserved WD40 repeat- 100.0 4.7E-27 1E-31 214.2 27.9 255 208-498 48-310 (487)
95 KOG0294 WD40 repeat-containing 100.0 3.4E-27 7.3E-32 203.5 25.3 260 219-519 39-305 (362)
96 KOG0275 Conserved WD40 repeat- 100.0 2.9E-28 6.2E-33 210.7 18.1 263 200-495 227-507 (508)
97 KOG0308 Conserved WD40 repeat- 100.0 3E-28 6.6E-33 228.9 19.4 296 221-539 19-325 (735)
98 KOG2106 Uncharacterized conser 100.0 1E-25 2.2E-30 205.9 33.8 355 152-539 101-519 (626)
99 KOG1539 WD repeat protein [Gen 100.0 6.8E-26 1.5E-30 219.0 34.1 372 143-539 190-646 (910)
100 KOG2055 WD40 repeat protein [G 100.0 8.6E-27 1.9E-31 210.8 25.5 291 223-540 213-511 (514)
101 KOG1539 WD repeat protein [Gen 100.0 2.2E-26 4.8E-31 222.3 29.3 343 172-540 179-605 (910)
102 KOG0294 WD40 repeat-containing 100.0 2.5E-26 5.4E-31 198.2 26.3 237 271-540 40-280 (362)
103 KOG1332 Vesicle coat complex C 100.0 3.4E-27 7.3E-32 196.4 20.2 254 271-539 8-284 (299)
104 KOG0301 Phospholipase A2-activ 100.0 6.5E-27 1.4E-31 221.7 24.8 279 214-539 5-286 (745)
105 KOG0641 WD40 repeat protein [G 100.0 5.8E-26 1.3E-30 186.8 26.9 252 274-540 32-302 (350)
106 KOG0647 mRNA export protein (c 100.0 3.1E-26 6.6E-31 196.5 23.6 243 272-539 25-279 (347)
107 KOG1446 Histone H3 (Lys4) meth 100.0 2.4E-25 5.2E-30 192.9 28.5 242 274-540 14-261 (311)
108 KOG0973 Histone transcription 100.0 4.4E-26 9.5E-31 227.3 26.9 280 200-498 27-356 (942)
109 PTZ00421 coronin; Provisional 100.0 1.9E-25 4.2E-30 220.0 31.0 248 275-540 21-289 (493)
110 KOG0264 Nucleosome remodeling 100.0 1.7E-26 3.7E-31 209.0 21.5 252 152-448 121-404 (422)
111 KOG0308 Conserved WD40 repeat- 100.0 1.8E-26 4E-31 217.0 22.3 311 200-540 39-392 (735)
112 KOG0268 Sof1-like rRNA process 100.0 5.6E-27 1.2E-31 205.7 17.3 279 150-498 61-346 (433)
113 KOG4283 Transcription-coupled 99.9 1.2E-25 2.7E-30 192.0 24.2 297 220-539 40-363 (397)
114 KOG0283 WD40 repeat-containing 99.9 6.4E-26 1.4E-30 220.5 24.7 298 139-497 250-576 (712)
115 KOG0299 U3 snoRNP-associated p 99.9 5.9E-25 1.3E-29 199.0 28.8 243 220-496 199-455 (479)
116 KOG1274 WD40 repeat protein [G 99.9 5.6E-25 1.2E-29 215.1 30.6 275 220-535 10-294 (933)
117 KOG2445 Nuclear pore complex c 99.9 4.7E-25 1E-29 189.7 25.5 257 271-539 10-316 (361)
118 KOG1063 RNA polymerase II elon 99.9 1.9E-24 4.2E-29 205.0 31.7 337 187-539 183-697 (764)
119 KOG0289 mRNA splicing factor [ 99.9 2.5E-25 5.5E-30 199.8 24.0 236 276-539 221-460 (506)
120 KOG0646 WD40 repeat protein [G 99.9 5.2E-25 1.1E-29 199.8 24.7 262 238-523 52-331 (476)
121 KOG2106 Uncharacterized conser 99.9 7.9E-24 1.7E-28 193.6 32.2 290 218-540 240-625 (626)
122 KOG1332 Vesicle coat complex C 99.9 1.3E-25 2.9E-30 186.9 18.7 261 218-498 6-287 (299)
123 KOG1273 WD40 repeat protein [G 99.9 7.3E-25 1.6E-29 189.1 23.6 284 226-539 26-320 (405)
124 KOG0301 Phospholipase A2-activ 99.9 8.2E-25 1.8E-29 207.5 25.8 254 200-498 27-289 (745)
125 KOG0321 WD40 repeat-containing 99.9 6.5E-25 1.4E-29 206.3 24.5 291 229-540 55-390 (720)
126 KOG0269 WD40 repeat-containing 99.9 1.7E-25 3.8E-30 214.6 20.5 288 224-537 40-336 (839)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.4E-23 2.9E-28 199.7 32.7 271 237-540 2-278 (300)
128 KOG0650 WD40 repeat nucleolar 99.9 1.1E-24 2.3E-29 203.2 23.7 288 217-538 394-732 (733)
129 KOG1036 Mitotic spindle checkp 99.9 1.8E-24 3.8E-29 186.5 23.2 239 273-540 12-261 (323)
130 KOG2048 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 199.4 30.6 279 224-537 26-315 (691)
131 KOG0646 WD40 repeat protein [G 99.9 4.1E-24 8.9E-29 194.0 23.8 268 241-540 12-306 (476)
132 KOG4328 WD40 protein [Function 99.9 3.8E-24 8.3E-29 193.6 23.4 299 217-538 180-492 (498)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-22 2.5E-27 193.3 34.3 281 200-521 3-300 (300)
134 KOG2096 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 177.9 26.6 307 150-510 81-415 (420)
135 KOG1408 WD40 repeat protein [F 99.9 4.5E-24 9.7E-29 202.9 22.0 248 222-498 458-714 (1080)
136 KOG1034 Transcriptional repres 99.9 2.6E-23 5.7E-28 180.6 24.3 306 217-539 32-381 (385)
137 KOG0307 Vesicle coat complex C 99.9 9.5E-25 2.1E-29 218.8 15.8 292 227-540 10-326 (1049)
138 KOG0269 WD40 repeat-containing 99.9 2.3E-24 5E-29 206.9 17.0 244 225-498 89-341 (839)
139 KOG0321 WD40 repeat-containing 99.9 5.1E-23 1.1E-27 193.6 24.9 316 185-522 51-428 (720)
140 KOG1445 Tumor-specific antigen 99.9 4.3E-23 9.3E-28 193.8 24.0 143 393-539 600-748 (1012)
141 KOG2445 Nuclear pore complex c 99.9 2E-22 4.2E-27 173.7 25.9 268 218-498 8-319 (361)
142 KOG4283 Transcription-coupled 99.9 4E-23 8.7E-28 176.7 21.5 286 152-497 40-365 (397)
143 KOG0302 Ribosome Assembly prot 99.9 3.9E-23 8.4E-28 182.7 20.5 253 271-538 148-435 (440)
144 KOG0270 WD40 repeat-containing 99.9 1.5E-22 3.3E-27 182.7 24.5 247 277-540 176-448 (463)
145 KOG0639 Transducin-like enhanc 99.9 8.1E-23 1.7E-27 186.9 22.3 258 205-497 437-704 (705)
146 KOG1274 WD40 repeat protein [G 99.9 3.1E-22 6.7E-27 196.1 27.2 247 272-540 11-261 (933)
147 KOG0267 Microtubule severing p 99.9 1.6E-24 3.6E-29 206.3 10.5 256 235-532 3-259 (825)
148 KOG1538 Uncharacterized conser 99.9 2.5E-22 5.4E-27 189.7 22.8 274 225-540 14-292 (1081)
149 KOG0267 Microtubule severing p 99.9 4.9E-24 1.1E-28 203.1 11.0 246 208-489 14-260 (825)
150 KOG4378 Nuclear protein COP1 [ 99.9 6.2E-22 1.4E-26 180.9 23.5 291 201-523 5-305 (673)
151 KOG2055 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 177.5 25.1 268 200-497 227-512 (514)
152 KOG4328 WD40 protein [Function 99.9 6.8E-22 1.5E-26 179.2 22.0 274 199-497 201-495 (498)
153 KOG4227 WD40 repeat protein [G 99.9 9E-22 2E-26 174.8 21.3 304 219-539 52-385 (609)
154 KOG2919 Guanine nucleotide-bin 99.9 1.7E-21 3.6E-26 169.1 22.4 289 226-533 52-362 (406)
155 KOG0290 Conserved WD40 repeat- 99.9 7E-21 1.5E-25 162.9 25.4 292 225-539 46-363 (364)
156 KOG2048 WD40 repeat protein [G 99.9 7.7E-21 1.7E-25 180.5 28.3 244 275-539 26-273 (691)
157 KOG1009 Chromatin assembly com 99.9 1.8E-21 3.8E-26 174.0 22.2 290 223-537 13-368 (434)
158 KOG1034 Transcriptional repres 99.9 3.8E-22 8.1E-27 173.5 17.0 252 221-497 87-383 (385)
159 KOG1007 WD repeat protein TSSC 99.9 1.2E-20 2.5E-25 161.4 23.7 259 217-538 57-358 (370)
160 KOG0270 WD40 repeat-containing 99.9 1.7E-21 3.6E-26 176.1 19.6 234 199-456 193-457 (463)
161 KOG2919 Guanine nucleotide-bin 99.9 7.4E-21 1.6E-25 165.1 22.2 243 277-540 52-326 (406)
162 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-21 3.6E-26 178.2 19.0 249 200-479 49-305 (673)
163 KOG0302 Ribosome Assembly prot 99.9 6.3E-21 1.4E-25 168.8 19.5 206 218-441 206-432 (440)
164 KOG1188 WD40 repeat protein [G 99.9 1.4E-20 3E-25 164.7 20.3 284 199-497 41-346 (376)
165 KOG0650 WD40 repeat nucleolar 99.9 2.1E-20 4.5E-25 174.9 22.5 259 257-538 383-677 (733)
166 KOG1188 WD40 repeat protein [G 99.9 4E-20 8.8E-25 161.9 22.2 282 237-539 41-344 (376)
167 KOG0322 G-protein beta subunit 99.9 1E-20 2.2E-25 159.8 16.1 286 218-540 9-322 (323)
168 KOG0642 Cell-cycle nuclear pro 99.9 6.3E-21 1.4E-25 177.5 14.7 257 271-540 291-560 (577)
169 KOG1273 WD40 repeat protein [G 99.9 1.1E-19 2.3E-24 157.4 21.0 269 199-498 36-323 (405)
170 KOG1587 Cytoplasmic dynein int 99.9 2.7E-19 5.9E-24 175.3 26.2 277 208-498 222-517 (555)
171 PRK11028 6-phosphogluconolacto 99.8 4.5E-18 9.7E-23 163.4 32.8 282 238-540 4-303 (330)
172 KOG1587 Cytoplasmic dynein int 99.8 1.3E-18 2.9E-23 170.5 28.8 271 246-540 222-515 (555)
173 KOG1009 Chromatin assembly com 99.8 2.8E-19 6.1E-24 160.1 21.1 280 199-498 27-373 (434)
174 KOG0642 Cell-cycle nuclear pro 99.8 1.9E-20 4.1E-25 174.3 13.9 276 210-510 281-572 (577)
175 KOG0303 Actin-binding protein 99.8 1.8E-19 3.9E-24 160.6 19.4 221 218-458 76-304 (472)
176 KOG0307 Vesicle coat complex C 99.8 5.4E-20 1.2E-24 185.1 17.5 232 200-451 82-330 (1049)
177 KOG1240 Protein kinase contain 99.8 1.6E-18 3.5E-23 175.0 27.8 313 218-539 1043-1431(1431)
178 KOG0644 Uncharacterized conser 99.8 1.8E-20 4E-25 181.5 12.4 279 219-538 186-465 (1113)
179 COG2319 FOG: WD40 repeat [Gene 99.8 4.1E-17 8.8E-22 163.2 35.4 290 218-540 60-358 (466)
180 KOG1517 Guanine nucleotide bin 99.8 2.6E-18 5.7E-23 170.9 25.7 303 210-539 1052-1379(1387)
181 KOG1538 Uncharacterized conser 99.8 5.1E-19 1.1E-23 167.6 19.2 250 207-497 32-293 (1081)
182 KOG1334 WD40 repeat protein [G 99.8 3.5E-19 7.5E-24 163.0 16.2 301 217-539 136-464 (559)
183 KOG0649 WD40 repeat protein [G 99.8 2E-17 4.4E-22 138.3 24.7 282 224-538 11-313 (325)
184 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-16 5.1E-21 157.7 37.5 298 205-540 131-441 (466)
185 KOG4227 WD40 repeat protein [G 99.8 1.9E-18 4.1E-23 153.8 19.1 256 271-540 53-321 (609)
186 KOG0290 Conserved WD40 repeat- 99.8 5.7E-18 1.2E-22 145.2 21.0 251 277-540 47-317 (364)
187 KOG1007 WD repeat protein TSSC 99.8 8.2E-18 1.8E-22 144.1 19.4 239 288-539 28-287 (370)
188 KOG0303 Actin-binding protein 99.8 1.5E-17 3.2E-22 148.5 21.4 205 324-540 79-293 (472)
189 KOG1963 WD40 repeat protein [G 99.8 6.1E-17 1.3E-21 159.0 27.7 298 219-540 201-537 (792)
190 PRK11028 6-phosphogluconolacto 99.8 7.9E-16 1.7E-20 147.8 32.9 271 204-498 8-305 (330)
191 KOG1963 WD40 repeat protein [G 99.8 3.4E-16 7.3E-21 153.9 28.5 308 207-530 36-417 (792)
192 KOG1445 Tumor-specific antigen 99.8 5.7E-17 1.2E-21 153.0 21.7 237 203-455 598-851 (1012)
193 KOG0771 Prolactin regulatory e 99.8 1.3E-17 2.8E-22 150.6 15.6 199 330-539 148-352 (398)
194 KOG1517 Guanine nucleotide bin 99.8 1.8E-16 3.8E-21 158.1 24.2 254 275-540 1065-1332(1387)
195 KOG1523 Actin-related protein 99.8 1.8E-16 3.9E-21 138.1 21.0 232 275-521 11-259 (361)
196 PRK01742 tolB translocation pr 99.8 1.2E-16 2.7E-21 158.1 22.0 238 245-522 183-426 (429)
197 KOG1523 Actin-related protein 99.8 5.8E-16 1.3E-20 134.9 22.9 210 223-451 10-239 (361)
198 KOG1310 WD40 repeat protein [G 99.7 2.5E-16 5.3E-21 146.5 21.8 224 149-408 44-307 (758)
199 KOG1524 WD40 repeat-containing 99.7 3.5E-16 7.5E-21 145.1 21.3 269 221-537 12-282 (737)
200 KOG1310 WD40 repeat protein [G 99.7 8.7E-17 1.9E-21 149.4 16.8 246 214-499 41-305 (758)
201 KOG0649 WD40 repeat protein [G 99.7 6.6E-15 1.4E-19 123.4 24.5 245 219-494 58-313 (325)
202 KOG0644 Uncharacterized conser 99.7 2.3E-17 4.9E-22 160.4 10.0 232 271-540 187-425 (1113)
203 KOG0771 Prolactin regulatory e 99.7 2.8E-16 6.1E-21 142.1 16.2 203 227-498 148-355 (398)
204 KOG4497 Uncharacterized conser 99.7 1.1E-14 2.4E-19 127.3 23.9 279 228-539 13-389 (447)
205 KOG2394 WD40 protein DMR-N9 [G 99.7 1E-15 2.2E-20 142.2 18.4 222 278-520 127-383 (636)
206 KOG2139 WD40 repeat protein [G 99.7 2.9E-14 6.2E-19 126.4 26.3 249 224-498 99-384 (445)
207 KOG1272 WD40-repeat-containing 99.7 9E-17 1.9E-21 146.5 10.5 228 277-539 132-360 (545)
208 KOG2110 Uncharacterized conser 99.7 1.7E-14 3.6E-19 128.4 24.1 231 275-540 6-247 (391)
209 PRK03629 tolB translocation pr 99.7 2.6E-14 5.5E-19 141.2 28.1 238 246-522 179-428 (429)
210 KOG4497 Uncharacterized conser 99.7 4.3E-15 9.2E-20 129.9 19.3 287 201-533 64-424 (447)
211 PRK01742 tolB translocation pr 99.7 3.5E-15 7.5E-20 147.8 21.2 232 207-478 183-426 (429)
212 KOG2110 Uncharacterized conser 99.7 2.8E-13 6.1E-18 120.7 30.4 241 223-498 5-249 (391)
213 KOG0322 G-protein beta subunit 99.7 2.7E-15 5.8E-20 127.3 16.8 266 203-496 30-322 (323)
214 KOG1334 WD40 repeat protein [G 99.7 2.5E-15 5.5E-20 138.0 17.4 279 200-498 156-467 (559)
215 KOG3881 Uncharacterized conser 99.7 1.1E-14 2.5E-19 130.3 20.7 250 273-540 54-319 (412)
216 KOG3881 Uncharacterized conser 99.7 2.1E-14 4.5E-19 128.7 21.4 276 223-522 55-342 (412)
217 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-13 2.4E-18 132.5 27.8 305 203-539 11-345 (369)
218 KOG2321 WD40 repeat protein [G 99.7 4.7E-14 1E-18 132.3 23.2 279 220-538 48-340 (703)
219 KOG2139 WD40 repeat protein [G 99.6 4.4E-14 9.6E-19 125.2 21.5 233 276-532 100-366 (445)
220 KOG1524 WD40 repeat-containing 99.6 7.8E-15 1.7E-19 136.3 17.4 207 236-493 75-282 (737)
221 PRK05137 tolB translocation pr 99.6 3.2E-13 6.9E-18 134.4 27.9 237 246-522 182-433 (435)
222 PRK04922 tolB translocation pr 99.6 1E-13 2.2E-18 137.6 24.2 237 246-521 184-432 (433)
223 KOG2111 Uncharacterized conser 99.6 4.7E-12 1E-16 110.8 30.8 278 225-537 7-318 (346)
224 PRK02889 tolB translocation pr 99.6 2.7E-13 5.9E-18 134.1 24.8 238 246-522 176-425 (427)
225 KOG1272 WD40-repeat-containing 99.6 8.2E-15 1.8E-19 133.9 12.0 264 225-530 131-398 (545)
226 PRK03629 tolB translocation pr 99.6 8E-13 1.7E-17 130.6 26.4 232 209-477 180-427 (429)
227 PF10282 Lactonase: Lactonase, 99.6 2.2E-11 4.7E-16 117.1 34.9 291 239-540 2-321 (345)
228 KOG2394 WD40 protein DMR-N9 [G 99.6 3.1E-13 6.8E-18 125.9 20.5 177 284-477 183-384 (636)
229 KOG1240 Protein kinase contain 99.6 8E-13 1.7E-17 134.6 24.1 251 271-540 1045-1333(1431)
230 KOG2111 Uncharacterized conser 99.6 1.5E-12 3.3E-17 113.9 22.2 233 277-540 8-255 (346)
231 KOG1409 Uncharacterized conser 99.6 5.8E-13 1.3E-17 117.5 19.7 248 218-497 19-270 (404)
232 KOG0280 Uncharacterized conser 99.5 1.6E-12 3.5E-17 112.4 20.9 271 245-538 45-330 (339)
233 KOG2321 WD40 repeat protein [G 99.5 9.2E-13 2E-17 123.8 20.2 269 246-539 7-300 (703)
234 KOG2315 Predicted translation 99.5 1.2E-11 2.6E-16 116.4 27.2 277 224-540 74-389 (566)
235 PRK04922 tolB translocation pr 99.5 3.3E-12 7.1E-17 127.0 24.5 233 208-477 184-432 (433)
236 PF08662 eIF2A: Eukaryotic tra 99.5 9.1E-13 2E-17 114.6 17.9 148 378-540 9-178 (194)
237 KOG1354 Serine/threonine prote 99.5 1.1E-12 2.5E-17 115.7 17.5 272 224-539 26-357 (433)
238 PRK05137 tolB translocation pr 99.5 1.3E-11 2.9E-16 122.8 27.0 204 299-531 181-396 (435)
239 PRK02889 tolB translocation pr 99.5 9.2E-12 2E-16 123.3 24.9 234 208-478 176-425 (427)
240 COG2706 3-carboxymuconate cycl 99.5 6.1E-10 1.3E-14 100.1 33.4 281 245-539 15-319 (346)
241 PRK00178 tolB translocation pr 99.5 1.7E-11 3.6E-16 122.3 26.5 237 247-522 180-428 (430)
242 TIGR02800 propeller_TolB tol-p 99.5 1.3E-11 2.8E-16 123.0 24.9 235 246-519 170-416 (417)
243 PF08662 eIF2A: Eukaryotic tra 99.5 5.1E-12 1.1E-16 109.9 18.9 156 330-506 9-185 (194)
244 PF02239 Cytochrom_D1: Cytochr 99.5 4.8E-11 1E-15 114.4 26.2 276 236-540 5-301 (369)
245 KOG2041 WD40 repeat protein [G 99.5 9.8E-12 2.1E-16 119.9 21.0 288 222-537 13-333 (1189)
246 PRK04792 tolB translocation pr 99.5 4.5E-11 9.8E-16 118.7 26.7 237 247-522 199-447 (448)
247 KOG1354 Serine/threonine prote 99.5 1.1E-11 2.4E-16 109.5 18.9 286 224-538 85-431 (433)
248 KOG0280 Uncharacterized conser 99.4 2.5E-11 5.5E-16 105.1 19.8 258 223-498 69-334 (339)
249 PF10282 Lactonase: Lactonase, 99.4 7.9E-10 1.7E-14 106.3 32.6 281 224-519 37-345 (345)
250 KOG1409 Uncharacterized conser 99.4 9E-12 2E-16 110.1 17.0 248 271-540 21-269 (404)
251 KOG0974 WD-repeat protein WDR6 99.4 5.9E-11 1.3E-15 119.6 24.3 138 201-359 148-290 (967)
252 PLN02919 haloacid dehalogenase 99.4 3.8E-10 8.3E-15 122.3 31.4 269 227-540 571-887 (1057)
253 KOG2314 Translation initiation 99.4 3E-10 6.5E-15 106.8 26.1 294 209-533 232-559 (698)
254 KOG0974 WD-repeat protein WDR6 99.4 2.2E-11 4.8E-16 122.6 19.4 274 223-540 7-287 (967)
255 COG5354 Uncharacterized protei 99.4 2.6E-10 5.6E-15 106.3 24.7 281 224-540 72-394 (561)
256 KOG0309 Conserved WD40 repeat- 99.4 4.4E-12 9.6E-17 122.6 13.4 288 224-540 25-338 (1081)
257 KOG4190 Uncharacterized conser 99.4 2.1E-12 4.5E-17 120.9 9.2 293 219-537 731-1032(1034)
258 TIGR02800 propeller_TolB tol-p 99.4 2.5E-10 5.5E-15 113.7 25.0 206 299-533 169-386 (417)
259 COG2706 3-carboxymuconate cycl 99.3 1.7E-08 3.7E-13 90.9 32.6 285 219-520 35-345 (346)
260 KOG2315 Predicted translation 99.3 1.1E-09 2.3E-14 103.5 26.1 279 223-540 34-343 (566)
261 KOG1064 RAVE (regulator of V-A 99.3 1.1E-11 2.3E-16 130.9 13.9 207 207-451 2189-2401(2439)
262 PRK00178 tolB translocation pr 99.3 1.5E-09 3.3E-14 108.3 26.3 223 218-477 193-427 (430)
263 KOG4547 WD40 repeat-containing 99.3 6.5E-10 1.4E-14 105.7 22.0 193 284-498 3-221 (541)
264 PRK01029 tolB translocation pr 99.3 1.2E-09 2.6E-14 107.7 24.5 233 219-479 180-426 (428)
265 PRK01029 tolB translocation pr 99.3 3.8E-09 8.3E-14 104.2 27.4 223 275-523 185-426 (428)
266 PRK04792 tolB translocation pr 99.3 1.8E-09 3.9E-14 107.4 24.9 223 217-477 211-446 (448)
267 KOG2314 Translation initiation 99.3 7.2E-09 1.6E-13 97.8 26.2 282 225-540 212-524 (698)
268 COG5354 Uncharacterized protei 99.2 3.6E-09 7.9E-14 98.8 23.5 282 222-539 31-346 (561)
269 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.6E-08 1E-12 91.8 29.0 266 246-540 27-329 (352)
270 PF04762 IKI3: IKI3 family; I 99.2 8.2E-08 1.8E-12 102.5 34.4 303 222-539 119-517 (928)
271 COG4946 Uncharacterized protei 99.2 1.9E-08 4.2E-13 93.2 25.4 158 210-394 346-508 (668)
272 TIGR02658 TTQ_MADH_Hv methylam 99.2 9.7E-08 2.1E-12 89.6 30.2 246 231-507 53-338 (352)
273 KOG4547 WD40 repeat-containing 99.2 8.2E-10 1.8E-14 105.0 16.2 186 338-539 4-218 (541)
274 KOG1064 RAVE (regulator of V-A 99.2 1.4E-10 3.1E-15 122.7 12.0 185 327-540 2209-2397(2439)
275 KOG2041 WD40 repeat protein [G 99.2 1.7E-09 3.8E-14 104.7 17.2 241 275-533 15-280 (1189)
276 TIGR03300 assembly_YfgL outer 99.2 2.9E-08 6.2E-13 97.4 26.6 267 236-539 105-377 (377)
277 KOG1912 WD40 repeat protein [G 99.2 6.6E-08 1.4E-12 95.0 27.7 351 146-540 46-550 (1062)
278 PF08450 SGL: SMP-30/Gluconola 99.1 1.5E-07 3.2E-12 86.3 29.1 226 279-529 4-243 (246)
279 COG4946 Uncharacterized protei 99.1 7.9E-08 1.7E-12 89.2 25.8 223 282-530 274-507 (668)
280 COG5170 CDC55 Serine/threonine 99.1 1.6E-09 3.5E-14 94.7 13.2 257 273-538 25-364 (460)
281 KOG4532 WD40-like repeat conta 99.1 8.1E-08 1.8E-12 82.7 21.8 241 236-498 84-332 (344)
282 PF15492 Nbas_N: Neuroblastoma 99.1 2.7E-07 5.8E-12 80.8 25.2 248 229-509 3-269 (282)
283 KOG4532 WD40-like repeat conta 99.1 4.5E-08 9.8E-13 84.2 19.4 219 286-530 84-321 (344)
284 TIGR03300 assembly_YfgL outer 99.1 1.4E-07 3.1E-12 92.4 26.2 262 236-539 65-336 (377)
285 PF04762 IKI3: IKI3 family; I 99.0 4.8E-07 1E-11 96.8 31.2 245 273-539 74-377 (928)
286 PRK04043 tolB translocation pr 99.0 3.2E-07 7E-12 90.0 27.7 193 276-497 189-400 (419)
287 PF07433 DUF1513: Protein of u 99.0 6.1E-07 1.3E-11 81.2 26.1 249 227-532 8-277 (305)
288 KOG3914 WD repeat protein WDR4 99.0 7.5E-09 1.6E-13 94.1 13.4 153 377-540 65-222 (390)
289 KOG1912 WD40 repeat protein [G 99.0 5.7E-08 1.2E-12 95.4 20.2 246 273-539 14-302 (1062)
290 KOG1832 HIV-1 Vpr-binding prot 99.0 7.6E-10 1.7E-14 109.6 6.5 225 217-485 1095-1319(1516)
291 PF15492 Nbas_N: Neuroblastoma 99.0 1.4E-06 3E-11 76.5 25.3 231 280-540 3-258 (282)
292 PRK04043 tolB translocation pr 99.0 5.3E-07 1.1E-11 88.5 25.8 203 299-532 168-388 (419)
293 PLN02919 haloacid dehalogenase 99.0 6.8E-07 1.5E-11 97.5 28.9 215 225-452 625-892 (1057)
294 KOG4190 Uncharacterized conser 98.9 3.9E-09 8.4E-14 99.4 8.9 206 271-498 732-949 (1034)
295 KOG3914 WD repeat protein WDR4 98.9 2.8E-08 6.1E-13 90.4 13.9 168 226-413 65-232 (390)
296 KOG0882 Cyclophilin-related pe 98.9 5.5E-08 1.2E-12 89.7 15.1 255 221-498 7-306 (558)
297 COG5170 CDC55 Serine/threonine 98.9 7.2E-08 1.6E-12 84.7 14.4 258 222-497 25-367 (460)
298 PRK11138 outer membrane biogen 98.9 3.5E-06 7.5E-11 83.0 28.3 266 237-540 121-393 (394)
299 KOG4714 Nucleoporin [Nuclear s 98.9 4.9E-08 1.1E-12 83.6 12.7 152 236-405 101-255 (319)
300 KOG0309 Conserved WD40 repeat- 98.9 1.1E-08 2.4E-13 99.6 9.9 219 218-498 109-340 (1081)
301 KOG1645 RING-finger-containing 98.9 6.2E-06 1.3E-10 75.5 26.5 260 248-539 175-459 (463)
302 KOG4714 Nucleoporin [Nuclear s 98.8 2.6E-08 5.7E-13 85.3 10.0 141 385-539 100-252 (319)
303 PF08450 SGL: SMP-30/Gluconola 98.8 1.5E-05 3.3E-10 72.9 27.9 222 227-485 3-243 (246)
304 PF00400 WD40: WD domain, G-be 98.7 1.8E-08 4E-13 62.3 4.3 38 502-539 2-39 (39)
305 PF00400 WD40: WD domain, G-be 98.7 3.5E-08 7.7E-13 61.0 5.5 35 217-252 5-39 (39)
306 PF13360 PQQ_2: PQQ-like domai 98.7 8.1E-06 1.8E-10 74.4 23.6 218 245-498 2-231 (238)
307 KOG2066 Vacuolar assembly/sort 98.7 4.7E-07 1E-11 89.8 14.3 184 327-539 40-231 (846)
308 PF06433 Me-amine-dh_H: Methyl 98.7 2.8E-05 6.1E-10 71.5 24.5 289 194-509 3-330 (342)
309 KOG2695 WD40 repeat protein [G 98.6 1.6E-07 3.4E-12 83.9 9.5 142 297-452 231-380 (425)
310 KOG3621 WD40 repeat-containing 98.6 4.6E-06 1E-10 81.8 20.2 164 226-407 36-200 (726)
311 KOG0882 Cyclophilin-related pe 98.6 5E-07 1.1E-11 83.5 12.5 207 325-540 8-230 (558)
312 KOG1920 IkappaB kinase complex 98.6 1.8E-05 4E-10 82.4 24.9 204 275-498 69-323 (1265)
313 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00018 3.9E-09 62.4 26.1 112 232-365 19-131 (354)
314 KOG3617 WD40 and TPR repeat-co 98.6 3.4E-06 7.4E-11 84.1 18.0 110 226-357 18-131 (1416)
315 KOG2066 Vacuolar assembly/sort 98.6 2.9E-06 6.4E-11 84.3 17.5 183 224-448 40-233 (846)
316 KOG2695 WD40 repeat protein [G 98.6 3.1E-07 6.6E-12 82.0 9.3 155 240-414 228-386 (425)
317 KOG1008 Uncharacterized conser 98.6 8.2E-08 1.8E-12 92.5 6.0 208 223-449 56-276 (783)
318 KOG3617 WD40 and TPR repeat-co 98.6 4.3E-06 9.3E-11 83.4 17.6 112 279-404 20-131 (1416)
319 KOG1645 RING-finger-containing 98.5 8.8E-06 1.9E-10 74.5 17.2 251 217-497 187-461 (463)
320 KOG1275 PAB-dependent poly(A) 98.5 4.3E-06 9.4E-11 84.2 15.7 187 285-497 146-342 (1118)
321 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.0001 2.2E-09 71.3 24.8 257 245-530 22-346 (353)
322 PRK11138 outer membrane biogen 98.5 0.00012 2.6E-09 72.2 25.6 268 238-539 71-351 (394)
323 KOG1832 HIV-1 Vpr-binding prot 98.5 2.5E-07 5.5E-12 92.3 6.5 212 271-526 1098-1316(1516)
324 PF07433 DUF1513: Protein of u 98.5 7.2E-05 1.6E-09 68.0 21.4 191 217-427 50-269 (305)
325 KOG2114 Vacuolar assembly/sort 98.4 6.6E-05 1.4E-09 75.6 22.3 213 280-515 29-260 (933)
326 KOG1008 Uncharacterized conser 98.4 1E-07 2.2E-12 91.9 2.8 198 328-540 58-274 (783)
327 PF13360 PQQ_2: PQQ-like domai 98.4 9.1E-05 2E-09 67.5 21.3 193 236-453 36-235 (238)
328 PRK02888 nitrous-oxide reducta 98.4 0.00015 3.3E-09 72.3 23.5 221 285-540 140-403 (635)
329 PF11768 DUF3312: Protein of u 98.4 0.00042 9.1E-09 67.5 25.4 89 398-498 238-330 (545)
330 PF11768 DUF3312: Protein of u 98.3 0.0021 4.6E-08 62.7 29.4 72 465-540 257-328 (545)
331 KOG2114 Vacuolar assembly/sort 98.3 0.00021 4.6E-09 72.1 23.0 208 231-454 31-249 (933)
332 KOG1920 IkappaB kinase complex 98.3 0.00022 4.8E-09 74.7 23.6 204 223-450 68-324 (1265)
333 PF06977 SdiA-regulated: SdiA- 98.3 0.00067 1.5E-08 60.9 23.2 207 219-445 17-247 (248)
334 cd00216 PQQ_DH Dehydrogenases 98.2 0.0011 2.3E-08 67.2 26.0 205 238-455 63-326 (488)
335 cd00216 PQQ_DH Dehydrogenases 98.1 0.0023 5E-08 64.8 26.8 249 237-508 111-433 (488)
336 PF14583 Pectate_lyase22: Olig 98.1 0.005 1.1E-07 58.1 26.2 276 230-538 42-378 (386)
337 KOG1275 PAB-dependent poly(A) 98.1 2.9E-05 6.2E-10 78.5 12.1 158 225-403 179-341 (1118)
338 PF04053 Coatomer_WDAD: Coatom 98.0 0.00048 1E-08 67.6 17.8 166 327-522 33-207 (443)
339 PF08596 Lgl_C: Lethal giant l 98.0 0.0024 5.1E-08 62.0 21.6 251 225-487 3-326 (395)
340 PRK02888 nitrous-oxide reducta 97.9 0.00065 1.4E-08 67.9 17.5 220 231-486 200-450 (635)
341 COG0823 TolB Periplasmic compo 97.9 0.0019 4E-08 63.4 20.6 187 276-487 194-389 (425)
342 COG3386 Gluconolactonase [Carb 97.9 0.0049 1.1E-07 57.5 22.1 231 280-530 30-274 (307)
343 PF00780 CNH: CNH domain; Int 97.9 0.016 3.5E-07 53.9 26.2 239 235-509 6-265 (275)
344 KOG3621 WD40 repeat-containing 97.9 0.00011 2.4E-09 72.5 11.3 152 373-529 32-187 (726)
345 PF06977 SdiA-regulated: SdiA- 97.8 0.0051 1.1E-07 55.3 20.1 199 327-538 22-247 (248)
346 PF08596 Lgl_C: Lethal giant l 97.8 0.0043 9.3E-08 60.2 20.8 209 328-540 3-289 (395)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.051 1.1E-06 55.4 29.1 205 238-453 71-338 (527)
348 PF03178 CPSF_A: CPSF A subuni 97.8 0.003 6.6E-08 60.3 19.2 187 339-537 42-261 (321)
349 PF04053 Coatomer_WDAD: Coatom 97.8 0.0088 1.9E-07 58.9 22.4 218 224-498 33-263 (443)
350 PF04841 Vps16_N: Vps16, N-ter 97.7 0.027 5.8E-07 55.5 25.2 196 301-524 62-272 (410)
351 PF08553 VID27: VID27 cytoplas 97.7 0.0014 3.1E-08 68.1 15.8 147 386-538 493-644 (794)
352 PF08553 VID27: VID27 cytoplas 97.7 0.0066 1.4E-07 63.3 20.2 144 338-497 492-647 (794)
353 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.022 4.7E-07 55.2 23.0 245 223-486 42-346 (353)
354 COG3391 Uncharacterized conser 97.6 0.035 7.6E-07 54.3 24.3 205 226-452 76-287 (381)
355 PF04841 Vps16_N: Vps16, N-ter 97.6 0.029 6.3E-07 55.2 22.8 181 224-427 81-271 (410)
356 COG0823 TolB Periplasmic compo 97.6 0.0082 1.8E-07 58.9 18.7 162 219-407 188-361 (425)
357 PF15390 DUF4613: Domain of un 97.6 0.082 1.8E-06 52.1 24.5 158 223-405 19-187 (671)
358 smart00320 WD40 WD40 repeats. 97.5 0.00015 3.2E-09 43.8 4.2 38 502-539 3-40 (40)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.091 2E-06 53.6 26.1 166 238-409 122-338 (527)
360 COG3386 Gluconolactonase [Carb 97.5 0.044 9.5E-07 51.3 21.6 221 230-485 31-273 (307)
361 PF02897 Peptidase_S9_N: Proly 97.5 0.11 2.4E-06 51.6 26.3 226 278-524 127-383 (414)
362 COG3490 Uncharacterized protei 97.5 0.069 1.5E-06 47.7 21.0 244 228-497 72-348 (366)
363 KOG2444 WD40 repeat protein [G 97.5 0.0002 4.4E-09 61.1 5.4 141 388-540 32-176 (238)
364 PF05694 SBP56: 56kDa selenium 97.5 0.03 6.4E-07 53.5 19.8 236 285-529 86-391 (461)
365 PF02897 Peptidase_S9_N: Proly 97.4 0.16 3.5E-06 50.6 30.4 264 210-499 109-406 (414)
366 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.017 3.6E-07 44.0 14.3 104 329-443 2-109 (111)
367 KOG4640 Anaphase-promoting com 97.4 0.0008 1.7E-08 65.9 9.0 94 224-336 21-115 (665)
368 KOG4640 Anaphase-promoting com 97.4 0.00073 1.6E-08 66.1 8.6 92 327-425 21-115 (665)
369 PF03178 CPSF_A: CPSF A subuni 97.4 0.048 1E-06 52.1 21.2 188 236-444 42-261 (321)
370 COG3204 Uncharacterized protei 97.3 0.064 1.4E-06 48.2 19.0 172 220-404 82-263 (316)
371 smart00320 WD40 WD40 repeats. 97.3 0.0004 8.7E-09 41.8 3.9 33 219-252 8-40 (40)
372 COG3391 Uncharacterized conser 97.3 0.21 4.5E-06 48.9 28.9 239 277-539 33-281 (381)
373 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.024 5.2E-07 43.2 13.9 101 377-493 2-110 (111)
374 PF07995 GSDH: Glucose / Sorbo 97.3 0.19 4E-06 48.1 27.1 256 225-492 3-330 (331)
375 PF14583 Pectate_lyase22: Olig 97.3 0.077 1.7E-06 50.4 20.2 237 273-532 34-303 (386)
376 KOG4499 Ca2+-binding protein R 97.2 0.074 1.6E-06 46.0 17.8 217 287-521 28-263 (310)
377 PF07995 GSDH: Glucose / Sorbo 97.2 0.21 4.5E-06 47.8 23.9 249 277-536 4-330 (331)
378 PF06433 Me-amine-dh_H: Methyl 97.2 0.13 2.8E-06 47.9 20.7 209 227-454 98-326 (342)
379 KOG4441 Proteins containing BT 97.2 0.04 8.7E-07 56.6 19.1 209 300-534 301-534 (571)
380 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.026 5.6E-07 49.5 14.4 110 386-508 23-132 (354)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.29 6.4E-06 47.6 25.2 45 466-512 306-350 (415)
382 PRK13616 lipoprotein LpqB; Pro 97.1 0.092 2E-06 54.1 20.8 160 222-404 348-527 (591)
383 PF10214 Rrn6: RNA polymerase 97.1 0.38 8.2E-06 51.8 26.3 168 274-450 79-278 (765)
384 PHA02713 hypothetical protein; 97.0 0.068 1.5E-06 55.1 19.1 183 338-539 303-531 (557)
385 PRK13616 lipoprotein LpqB; Pro 97.0 0.11 2.3E-06 53.6 20.1 188 275-491 350-562 (591)
386 KOG1897 Damage-specific DNA bi 97.0 0.62 1.3E-05 49.1 29.3 286 223-538 530-895 (1096)
387 PF00780 CNH: CNH domain; Int 97.0 0.32 7E-06 45.2 25.0 226 284-540 5-254 (275)
388 KOG2395 Protein involved in va 96.9 0.03 6.6E-07 54.1 14.2 143 385-532 344-492 (644)
389 PF05096 Glu_cyclase_2: Glutam 96.9 0.29 6.3E-06 44.0 20.4 186 226-437 47-250 (264)
390 KOG4441 Proteins containing BT 96.8 0.5 1.1E-05 48.8 23.3 230 235-499 284-548 (571)
391 KOG2079 Vacuolar assembly/sort 96.8 0.0042 9.1E-08 64.8 7.6 99 431-539 100-201 (1206)
392 COG3490 Uncharacterized protei 96.7 0.045 9.7E-07 48.8 12.6 116 406-530 58-180 (366)
393 PF14727 PHTB1_N: PTHB1 N-term 96.7 0.67 1.4E-05 45.3 29.1 154 233-403 34-203 (418)
394 PF05694 SBP56: 56kDa selenium 96.7 0.42 9.1E-06 46.0 19.6 241 236-485 87-391 (461)
395 KOG2079 Vacuolar assembly/sort 96.7 0.046 9.9E-07 57.5 14.1 101 286-403 99-202 (1206)
396 PF10647 Gmad1: Lipoprotein Lp 96.6 0.18 3.9E-06 46.1 16.5 149 376-533 25-187 (253)
397 TIGR03118 PEPCTERM_chp_1 conse 96.6 0.48 1E-05 43.2 18.2 206 329-539 25-277 (336)
398 TIGR03118 PEPCTERM_chp_1 conse 96.6 0.59 1.3E-05 42.6 25.6 232 277-521 25-307 (336)
399 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0091 2E-07 37.8 5.4 33 326-360 11-43 (47)
400 PHA02713 hypothetical protein; 96.5 1 2.2E-05 46.6 23.3 144 338-499 351-535 (557)
401 KOG2395 Protein involved in va 96.5 0.033 7.2E-07 53.9 11.3 139 341-497 348-500 (644)
402 COG5276 Uncharacterized conser 96.4 0.68 1.5E-05 41.8 29.2 278 224-540 87-368 (370)
403 PF12894 Apc4_WD40: Anaphase-p 96.4 0.016 3.6E-07 36.6 5.9 35 373-408 10-44 (47)
404 TIGR02604 Piru_Ver_Nterm putat 96.3 1.2 2.5E-05 43.5 24.0 153 224-395 14-204 (367)
405 PF12234 Rav1p_C: RAVE protein 96.0 0.24 5.2E-06 50.6 14.9 114 279-404 34-156 (631)
406 PF15390 DUF4613: Domain of un 96.0 0.16 3.5E-06 50.2 12.9 156 376-539 21-184 (671)
407 KOG2444 WD40 repeat protein [G 95.9 0.026 5.6E-07 48.7 6.3 141 342-498 33-178 (238)
408 COG3204 Uncharacterized protei 95.8 1.4 3E-05 40.0 20.2 202 272-485 83-301 (316)
409 KOG1897 Damage-specific DNA bi 95.8 3.1 6.8E-05 44.1 33.3 260 220-498 303-614 (1096)
410 KOG3630 Nuclear pore complex, 95.8 0.15 3.2E-06 54.3 12.5 143 375-529 101-261 (1405)
411 TIGR02604 Piru_Ver_Nterm putat 95.6 2.5 5.3E-05 41.3 24.4 151 277-436 16-201 (367)
412 TIGR03074 PQQ_membr_DH membran 95.4 4.6 0.0001 43.2 22.5 122 238-367 196-354 (764)
413 PF10313 DUF2415: Uncharacteri 95.3 0.073 1.6E-06 32.6 5.0 32 224-255 1-34 (43)
414 PHA03098 kelch-like protein; P 95.3 0.83 1.8E-05 47.2 16.4 183 338-539 294-509 (534)
415 PF08728 CRT10: CRT10; InterP 95.1 0.72 1.6E-05 47.8 14.7 110 431-540 115-245 (717)
416 TIGR03074 PQQ_membr_DH membran 95.1 4.7 0.0001 43.2 21.2 115 340-455 195-351 (764)
417 PRK10115 protease 2; Provision 95.0 6.1 0.00013 42.1 28.0 115 277-403 129-254 (686)
418 KOG4499 Ca2+-binding protein R 94.9 2.4 5.1E-05 37.1 17.8 145 275-429 109-267 (310)
419 PHA03098 kelch-like protein; P 94.9 2.9 6.2E-05 43.3 19.1 154 338-507 342-521 (534)
420 KOG1916 Nuclear protein, conta 94.8 0.022 4.8E-07 58.5 3.0 70 468-540 181-264 (1283)
421 PF10647 Gmad1: Lipoprotein Lp 94.7 3.3 7.3E-05 37.8 21.5 153 328-489 25-187 (253)
422 KOG2280 Vacuolar assembly/sort 94.6 4.5 9.8E-05 41.7 18.4 201 300-523 64-271 (829)
423 PF05096 Glu_cyclase_2: Glutam 94.6 3.5 7.5E-05 37.3 22.2 188 327-530 45-249 (264)
424 PF14870 PSII_BNR: Photosynthe 94.5 4.1 8.9E-05 38.1 29.6 282 223-538 16-301 (302)
425 PLN00033 photosystem II stabil 94.5 5.3 0.00012 39.1 33.4 148 377-538 241-396 (398)
426 KOG2247 WD40 repeat-containing 94.3 0.0094 2E-07 57.0 -0.6 148 373-533 33-180 (615)
427 KOG3630 Nuclear pore complex, 94.3 0.75 1.6E-05 49.3 12.6 135 193-344 109-260 (1405)
428 PRK04406 hypothetical protein; 94.3 0.35 7.5E-06 34.2 7.3 52 24-75 8-59 (75)
429 PF10313 DUF2415: Uncharacteri 94.2 0.18 3.8E-06 30.9 4.9 32 328-359 2-35 (43)
430 PF12234 Rav1p_C: RAVE protein 94.2 1.1 2.5E-05 45.9 13.5 119 225-358 31-157 (631)
431 PRK02793 phi X174 lysis protei 94.1 0.57 1.2E-05 32.9 8.1 53 24-76 5-57 (72)
432 PF14870 PSII_BNR: Photosynthe 94.1 5.1 0.00011 37.5 22.5 154 274-445 144-301 (302)
433 PHA02790 Kelch-like protein; P 94.0 2.6 5.6E-05 42.8 16.0 180 338-539 271-468 (480)
434 PRK00736 hypothetical protein; 93.9 0.84 1.8E-05 31.6 8.4 51 25-75 3-53 (68)
435 PF14727 PHTB1_N: PTHB1 N-term 93.9 7.1 0.00015 38.4 23.9 153 286-448 37-204 (418)
436 PF10168 Nup88: Nuclear pore c 93.9 10 0.00023 40.3 23.8 78 327-406 85-181 (717)
437 TIGR03606 non_repeat_PQQ dehyd 93.7 8.2 0.00018 38.4 18.2 112 375-488 30-166 (454)
438 PF14781 BBS2_N: Ciliary BBSom 93.5 3.1 6.8E-05 33.1 12.9 117 333-451 5-128 (136)
439 PF08728 CRT10: CRT10; InterP 93.5 3.6 7.7E-05 42.9 15.6 157 286-447 49-245 (717)
440 PRK02119 hypothetical protein; 93.4 0.73 1.6E-05 32.4 7.6 51 25-75 7-57 (73)
441 PRK00295 hypothetical protein; 93.3 1.2 2.7E-05 30.8 8.4 51 25-75 3-53 (68)
442 PF07569 Hira: TUP1-like enhan 93.2 0.87 1.9E-05 40.4 9.8 67 431-498 23-96 (219)
443 PF04102 SlyX: SlyX; InterPro 93.0 0.39 8.4E-06 33.5 5.7 51 25-75 2-52 (69)
444 COG3823 Glutamine cyclotransfe 93.0 2.8 6.1E-05 36.0 11.5 103 338-450 55-160 (262)
445 PRK04325 hypothetical protein; 92.4 1.5 3.2E-05 31.1 7.9 53 23-75 5-57 (74)
446 PF10168 Nup88: Nuclear pore c 92.2 18 0.0004 38.5 21.8 84 374-457 84-188 (717)
447 PRK00846 hypothetical protein; 92.0 1.9 4.1E-05 30.5 8.0 54 24-77 10-63 (77)
448 COG5167 VID27 Protein involved 91.9 2 4.4E-05 42.0 10.7 140 383-532 476-624 (776)
449 KOG1916 Nuclear protein, conta 91.8 0.41 8.9E-06 49.8 6.3 188 244-454 109-329 (1283)
450 KOG2377 Uncharacterized conser 91.7 3.8 8.3E-05 39.6 12.1 138 278-427 26-165 (657)
451 KOG3616 Selective LIM binding 91.6 6.9 0.00015 40.3 14.4 33 224-257 15-47 (1636)
452 PF07569 Hira: TUP1-like enhan 91.6 1.1 2.3E-05 39.9 8.2 69 236-309 22-96 (219)
453 PF13449 Phytase-like: Esteras 91.4 13 0.00029 35.4 16.2 151 373-528 18-231 (326)
454 COG3823 Glutamine cyclotransfe 91.4 8.7 0.00019 33.2 14.0 151 235-407 55-207 (262)
455 PLN02153 epithiospecifier prot 91.3 14 0.00031 35.5 21.3 23 338-360 85-112 (341)
456 COG5276 Uncharacterized conser 91.2 12 0.00026 34.3 26.5 196 276-499 88-287 (370)
457 COG4257 Vgb Streptogramin lyas 91.1 11 0.00025 34.0 22.9 231 225-498 63-306 (353)
458 PHA02790 Kelch-like protein; P 91.0 20 0.00043 36.5 19.8 106 284-408 317-427 (480)
459 PF03022 MRJP: Major royal jel 90.8 14 0.00031 34.5 15.4 61 469-529 187-253 (287)
460 KOG2377 Uncharacterized conser 90.7 8.9 0.00019 37.2 13.5 108 413-529 64-171 (657)
461 PF12657 TFIIIC_delta: Transcr 90.4 1.9 4.1E-05 36.8 8.4 27 513-539 87-119 (173)
462 COG4257 Vgb Streptogramin lyas 89.7 15 0.00033 33.2 19.9 191 277-498 64-263 (353)
463 PF14781 BBS2_N: Ciliary BBSom 89.6 9.3 0.0002 30.5 13.6 112 280-406 4-127 (136)
464 PF02333 Phytase: Phytase; In 89.5 21 0.00046 34.5 19.9 186 338-539 67-288 (381)
465 TIGR03547 muta_rot_YjhT mutatr 89.4 21 0.00046 34.4 22.9 54 478-533 257-332 (346)
466 KOG2280 Vacuolar assembly/sort 89.2 31 0.00067 36.0 20.4 200 224-452 44-250 (829)
467 KOG2247 WD40 repeat-containing 89.0 0.18 3.9E-06 48.6 1.2 146 277-445 37-185 (615)
468 PF13449 Phytase-like: Esteras 88.6 23 0.0005 33.8 19.3 161 224-391 20-231 (326)
469 PF14655 RAB3GAP2_N: Rab3 GTPa 88.4 6.4 0.00014 38.6 11.2 80 373-452 306-402 (415)
470 KOG1900 Nuclear pore complex, 88.3 16 0.00034 40.6 14.7 145 393-540 96-271 (1311)
471 PF12657 TFIIIC_delta: Transcr 87.9 5.1 0.00011 34.1 9.2 32 374-405 85-122 (173)
472 TIGR02449 conserved hypothetic 87.5 4.1 9E-05 27.7 6.5 51 24-74 4-54 (65)
473 PF10214 Rrn6: RNA polymerase 87.4 48 0.001 36.1 22.1 120 275-405 146-277 (765)
474 PRK14131 N-acetylneuraminic ac 87.4 31 0.00066 33.8 22.1 40 491-532 314-353 (376)
475 COG1520 FOG: WD40-like repeat 87.3 29 0.00062 33.9 15.4 106 341-454 70-177 (370)
476 COG5167 VID27 Protein involved 87.1 16 0.00035 36.1 12.7 142 238-404 482-632 (776)
477 KOG1900 Nuclear pore complex, 87.1 7.2 0.00016 43.1 11.4 34 465-498 240-273 (1311)
478 PRK10115 protease 2; Provision 86.9 47 0.001 35.5 31.5 246 224-498 127-395 (686)
479 COG4590 ABC-type uncharacteriz 86.7 5 0.00011 38.8 9.0 167 274-452 220-390 (733)
480 COG2900 SlyX Uncharacterized p 86.6 8.5 0.00018 26.6 7.8 54 24-77 5-58 (72)
481 PF14761 HPS3_N: Hermansky-Pud 86.6 21 0.00046 31.2 12.3 51 287-347 29-79 (215)
482 KOG1898 Splicing factor 3b, su 86.5 54 0.0012 35.8 24.6 292 223-540 582-1003(1205)
483 KOG1520 Predicted alkaloid syn 86.3 25 0.00054 33.6 13.3 156 275-449 115-294 (376)
484 PF02333 Phytase: Phytase; In 86.1 34 0.00074 33.1 18.2 195 285-498 67-291 (381)
485 PRK13684 Ycf48-like protein; P 85.9 34 0.00073 32.8 30.0 152 374-539 172-329 (334)
486 PF14761 HPS3_N: Hermansky-Pud 85.8 23 0.00051 30.9 15.7 153 237-403 29-213 (215)
487 KOG4460 Nuclear pore complex, 85.5 10 0.00022 37.6 10.4 78 374-451 103-201 (741)
488 PF14193 DUF4315: Domain of un 85.5 2.1 4.5E-05 30.9 4.6 33 36-68 3-35 (83)
489 TIGR03548 mutarot_permut cycli 85.4 35 0.00075 32.5 21.8 67 338-408 123-198 (323)
490 KOG2006 WD40 repeat protein [G 85.4 6.9 0.00015 41.9 10.1 77 226-310 151-227 (1023)
491 COG1520 FOG: WD40-like repeat 85.1 39 0.00085 32.9 19.3 144 297-452 75-221 (370)
492 KOG4460 Nuclear pore complex, 85.1 12 0.00025 37.2 10.6 72 469-540 105-197 (741)
493 PRK00846 hypothetical protein; 84.4 4.1 8.8E-05 28.9 5.5 37 34-70 27-63 (77)
494 PRK14127 cell division protein 84.3 1.7 3.7E-05 33.2 4.0 41 22-62 25-65 (109)
495 TIGR03606 non_repeat_PQQ dehyd 84.0 49 0.0011 33.1 29.0 120 224-348 30-166 (454)
496 KOG2264 Exostosin EXT1L [Signa 83.9 0.8 1.7E-05 44.9 2.6 7 441-447 680-686 (907)
497 TIGR02276 beta_rpt_yvtn 40-res 83.8 5.5 0.00012 24.1 5.7 32 384-415 1-33 (42)
498 KOG1983 Tomosyn and related SN 83.2 29 0.00062 38.7 14.2 32 223-255 35-66 (993)
499 KOG4196 bZIP transcription fac 83.2 8.9 0.00019 29.9 7.3 34 36-69 83-116 (135)
500 KOG1983 Tomosyn and related SN 83.2 61 0.0013 36.3 16.6 30 275-308 36-65 (993)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-52 Score=363.25 Aligned_cols=326 Identities=19% Similarity=0.277 Sum_probs=285.3
Q ss_pred CCeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcc
Q 009203 146 GSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSS 220 (540)
Q Consensus 146 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~ 220 (540)
.+...++||..+|.++.+.|... .+++++.|.++++||.. .+.+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~-------------------------------~l~tGsGD~TvR~WD~~TeTp~~t~K 154 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGS-------------------------------RLVTGSGDTTVRLWDLDTETPLFTCK 154 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCc-------------------------------eEEecCCCceEEeeccCCCCcceeec
Confidence 34456789999999999999743 58999999999999876 5689
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-----CCCeEEEEeec
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-----QGNSLFSAHTA 295 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-----~~~~l~s~~~~ 295 (540)
||...|.|++|+|| |..||+|+.||+|++||..+++.+.... .+|..+|++++|.| ..++|+++
T Consensus 155 gH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg~~~g~~l-------~gH~K~It~Lawep~hl~p~~r~las~--- 223 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTGQQIGRAL-------RGHKKWITALAWEPLHLVPPCRRLASS--- 223 (480)
T ss_pred CCccEEEEEEECCC-cchhhccccCCeEEEecCCCCCcccccc-------cCcccceeEEeecccccCCCccceecc---
Confidence 99999999999997 9999999999999999999988655443 69999999999976 56799999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.||.|+|||+..+ .++..+.+ |..+|+|+.|- ...+|++|+.|++|++|+...|.+ ...+ .+|..
T Consensus 224 -skDg~vrIWd~~~~---~~~~~lsg---HT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~---~r~l--kGHah 289 (480)
T KOG0271|consen 224 -SKDGSVRIWDTKLG---TCVRTLSG---HTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKL---CREL--KGHAH 289 (480)
T ss_pred -cCCCCEEEEEccCc---eEEEEecc---CccceEEEEEc--CCceEEecCCCceEEEEEccchhH---HHhh--cccch
Confidence 99999999999975 66777776 78899999996 456999999999999999999876 3444 56999
Q ss_pred ceeEEEec-----------cCC-------------------------CEEEEEeCCCeEEEEECCCCC-eee-eeccCcc
Q 009203 376 AVMGVAGM-----------QQK-------------------------QIVLSAGADKRIIGFDAGVGR-ADF-KHQIESK 417 (540)
Q Consensus 376 ~v~~l~~s-----------~~~-------------------------~~l~~~~~dg~i~iwd~~~~~-~~~-~~~~~~~ 417 (540)
.|+.++.+ |.+ ..+++|+.|.++.+|+....+ ++. ...+..-
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l 369 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL 369 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh
Confidence 99999876 223 359999999999999987654 333 3556677
Q ss_pred EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
+..+.|+|++ +++++++.|..|++||.++++... .+.+|-..|..++|+.|.++|++|+.|.++++|+++
T Consensus 370 Vn~V~fSPd~---r~IASaSFDkSVkLW~g~tGk~la-------sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 370 VNHVSFSPDG---RYIASASFDKSVKLWDGRTGKFLA-------SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred eeeEEECCCc---cEEEEeecccceeeeeCCCcchhh-------hhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence 8899999998 899999999999999999998543 678999999999999999999999999999999999
Q ss_pred CCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 498 YSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 498 ~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
+ .+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 440 t--kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 440 T--KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred e--eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 8 788889999999999999999999999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-48 Score=343.46 Aligned_cols=291 Identities=22% Similarity=0.289 Sum_probs=248.8
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.||.++|.|++|+|+ |..|++|+.|.++|+||+.+.....+. .+|..+|.|++|+|||+.||+| +
T Consensus 110 S~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~TeTp~~t~--------KgH~~WVlcvawsPDgk~iASG----~ 176 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDTETPLFTC--------KGHKNWVLCVAWSPDGKKIASG----S 176 (480)
T ss_pred ccCCCCCcEEEEEecCC-CceEEecCCCceEEeeccCCCCcceee--------cCCccEEEEEEECCCcchhhcc----c
Confidence 47899999999999996 999999999999999999998776666 6999999999999999999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC----CCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW----ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
.||.|++||..++ ......+.+ |+..|++++|.|- ...+|++++.||.|+|||+..+.+ .+...+|
T Consensus 177 ~dg~I~lwdpktg--~~~g~~l~g---H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-----~~~lsgH 246 (480)
T KOG0271|consen 177 KDGSIRLWDPKTG--QQIGRALRG---HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-----VRTLSGH 246 (480)
T ss_pred cCCeEEEecCCCC--CcccccccC---cccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-----EEEeccC
Confidence 9999999999988 344455554 7888999999763 467899999999999999999875 3334679
Q ss_pred CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeec-----------CCCC-------------
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPN-----------PCDF------------- 428 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~------------- 428 (540)
+.+|+|+.|-- ..+|++|+.|++|++|+...|.+...... ...+..++.+ |.+.
T Consensus 247 T~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 247 TASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 99999999973 46899999999999999999887554332 3344444443 2221
Q ss_pred ---------CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203 429 ---------NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS 499 (540)
Q Consensus 429 ---------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~ 499 (540)
.+..+++|+.|.++.+|+......++. ...+|..-|+.+.||||++++|+++.|..|++||..+
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~------rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t- 398 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT------RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT- 398 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEecccccccchh------hhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-
Confidence 113699999999999999876554332 5578999999999999999999999999999999998
Q ss_pred CCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 500 ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 500 ~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++.+.+|++|-+.|+.++|+.|.++|++||.|.+++||++
T Consensus 399 -Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 399 -GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred -cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 8999999999999999999999999999999999999985
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5e-47 Score=337.32 Aligned_cols=283 Identities=19% Similarity=0.298 Sum_probs=257.3
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeecCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTADS 297 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~~~ 297 (540)
.|-+.+|..+.|++| +.+||||+.+|.++||+......+.++ .||...|.++.|+|. +..|++| +
T Consensus 172 ~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~~~~~l--------~gH~~~v~~~~fhP~~~~~~lat~----s 238 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCNLLQTL--------RGHTSRVGAAVFHPVDSDLNLATA----S 238 (459)
T ss_pred ccCCCcceeeEeecC-CCeEEEeecCCceeEeecCCcceeEEE--------eccccceeeEEEccCCCccceeee----c
Confidence 467789999999996 999999999999999999998777776 699999999999997 5689999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.||++++|++.+. ..+..+.+ |...|..++|+| +|++|+|++.|.+-++||++++.. .+...+|...|
T Consensus 239 ~Dgtvklw~~~~e---~~l~~l~g---H~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~E-----lL~QEGHs~~v 306 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE---TPLQDLEG---HLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSE-----LLLQEGHSKGV 306 (459)
T ss_pred cCCceeeeccCCC---cchhhhhc---chhhheeeeecC-CCceeeecccccchhhcccccchh-----hHhhccccccc
Confidence 9999999999874 44666665 678899999999 999999999999999999999873 45558899999
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
.+++|.+||.++++|+.|..-+|||+++|.++.... +-..+.++.|+|.+ +.|++|+.|++++|||++......
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG---y~lATgs~Dnt~kVWDLR~r~~ly-- 381 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG---YHLATGSSDNTCKVWDLRMRSELY-- 381 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc---eEEeecCCCCcEEEeeecccccce--
Confidence 999999999999999999999999999999987754 45778999999988 799999999999999999777522
Q ss_pred eccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203 457 FGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI 535 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v 535 (540)
.+.+|.+-|+.|.|+| .|.+|++++.|++++||...+ ..++.++.||.+.|.++++++|+++++|++.|+++
T Consensus 382 -----~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 382 -----TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred -----ecccccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEeccCcee
Confidence 5678999999999999 789999999999999999998 89999999999999999999999999999999999
Q ss_pred EEEe
Q 009203 536 GLHK 539 (540)
Q Consensus 536 ~iw~ 539 (540)
++|.
T Consensus 455 KLW~ 458 (459)
T KOG0272|consen 455 KLWR 458 (459)
T ss_pred eecc
Confidence 9995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.7e-45 Score=309.43 Aligned_cols=293 Identities=19% Similarity=0.235 Sum_probs=254.5
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.+|+||.+.|.++.|++| +++|++++.||.+.|||.-+......+ +-...+|..++|+|.|+++|.|
T Consensus 49 r~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~hai--------pl~s~WVMtCA~sPSg~~VAcG---- 115 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAI--------PLPSSWVMTCAYSPSGNFVACG---- 115 (343)
T ss_pred EEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEE--------ecCceeEEEEEECCCCCeEEec----
Confidence 457899999999999997 999999999999999999887766555 3456889999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|+...||++.+......+........|.+.+.|+.|.+ ...|+|++.|.+..+||+++++. .....+|.+.
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~-----~~~f~GH~gD 188 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQ-----TQVFHGHTGD 188 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceE-----EEEecCCccc
Confidence 9999999999986543333333333445889999999986 45788999999999999999974 4444689999
Q ss_pred eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
|.++.++| +++.+++|+-|+..++||++.+.+.+.+ .++..+.++.|.|++ .-+++|+.|++.++||++..+...
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G---~afatGSDD~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG---DAFATGSDDATCRLYDLRADQELA 265 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC---CeeeecCCCceeEEEeecCCcEEe
Confidence 99999999 9999999999999999999999988774 567889999999998 689999999999999999876544
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCc
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLN 534 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~ 534 (540)
.. .......+|++++||..|++|++|..|..+.+||.-. ++.+..+.+|.+.|.++..+|||..|+|||.|.+
T Consensus 266 ~y-----s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk--~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 266 VY-----SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK--GERVGVLAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred ee-----ccCcccCCceeEEEcccccEEEeeecCCceeEeeccc--cceEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence 32 1233456899999999999999999999999999987 7888899999999999999999999999999999
Q ss_pred EEEEe
Q 009203 535 IGLHK 539 (540)
Q Consensus 535 v~iw~ 539 (540)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-44 Score=328.89 Aligned_cols=366 Identities=19% Similarity=0.271 Sum_probs=299.2
Q ss_pred CCCCCCCCeeeecCCcceeeEEEEcccccccC---CCCccEEEEeecCCCceEEe--cccccccceEEecC---------
Q 009203 140 GAKDPSGSSTQASPAAHSIGIVKVKGEKSHRN---SSDSEIVEVRDRGTKRKFEQ--KEHRELIPLVRTSA--------- 205 (540)
Q Consensus 140 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~--------- 205 (540)
|...+..+..++.||+..|++|+++|.||||+ ++|..+. ||+|+||+|.. +.|..||+++++++
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~--ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVA--FFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEE--EeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 66778889999999999999999999999999 8899988 99999999876 69999999988765
Q ss_pred CCCeEEEeccc-----hhcc---cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203 206 SPATIHCHTSN-----HVSS---LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP 277 (540)
Q Consensus 206 ~d~~i~~~~~~-----~~~~---~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V 277 (540)
.|+++.+||+. ..+. +|++.|.+|+|+|| +..++|++.|.+++|||+.+..++.++..... -.+.-
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-----v~dqq 283 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWPMGST-----VEDQQ 283 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEeecCCc-----hhceE
Confidence 48999999886 2244 99999999999997 89999999999999999999988877754322 12334
Q ss_pred eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203 278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER 357 (540)
Q Consensus 278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 357 (540)
..+-|- +..|++. +.+|.|.+++...+ .....+.+ |...|+++..+| ++.+|++|+.||.|.-||..
T Consensus 284 vG~lWq--kd~lItV----Sl~G~in~ln~~d~---~~~~~i~G---HnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 284 VGCLWQ--KDHLITV----SLSGTINYLNPSDP---SVLKVISG---HNKSITALTVSP-DGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EEEEEe--CCeEEEE----EcCcEEEEecccCC---Chhheecc---cccceeEEEEcC-CCCEEEeeccCceEEEEecC
Confidence 456675 5678888 89999999999876 35666665 667799999999 99999999999999999999
Q ss_pred CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee---------------------------
Q 009203 358 DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF--------------------------- 410 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------------- 410 (540)
++.. ..+...+|...|.+++-+.. ..+++++.|.++++.++..+....
T Consensus 351 ~g~~----~~~~g~~h~nqI~~~~~~~~-~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 351 SGTS----DRLAGKGHTNQIKGMAASES-GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred Cccc----cccccccccceEEEEeecCC-CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence 9874 44444679999999998754 456778888899999774321100
Q ss_pred -------------eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 411 -------------KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 411 -------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
.....-...+++.+|++ ..++.|+.|+.|++|.+......-. .....|.++|++++|||
T Consensus 426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~---~~vaVGG~Dgkvhvysl~g~~l~ee-----~~~~~h~a~iT~vaySp 497 (603)
T KOG0318|consen 426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDG---SEVAVGGQDGKVHVYSLSGDELKEE-----AKLLEHRAAITDVAYSP 497 (603)
T ss_pred CcEEEEecCCcceeeccccccceEEEcCCC---CEEEEecccceEEEEEecCCcccce-----eeeecccCCceEEEECC
Confidence 00012233456667766 6899999999999999987653211 13457999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 478 DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 478 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|+.|||+|...+.+.+||+.+.+ .....+..|.+.|.+++|+|+..++|||+.|-+|.||++
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~-~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASRE-VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCc-eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 99999999999999999999842 245566779999999999999999999999999999985
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.2e-43 Score=311.74 Aligned_cols=263 Identities=19% Similarity=0.264 Sum_probs=233.3
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
.+++++=++.+++|+.. ++|.||++.|.++.|+|. ++..||||+.||+|++|++.....+..+ .||
T Consensus 189 ~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l--------~gH 260 (459)
T KOG0272|consen 189 HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL--------EGH 260 (459)
T ss_pred eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh--------hcc
Confidence 57888899999999654 679999999999999996 4778999999999999999987776666 699
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
...|..++|+|+|++|+++ +.|.+-++||+.++. .+...++ |...|.+++|+| +|.+++||+.|..-+|
T Consensus 261 ~~RVs~VafHPsG~~L~Ta----sfD~tWRlWD~~tk~---ElL~QEG---Hs~~v~~iaf~~-DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTA----SFDSTWRLWDLETKS---ELLLQEG---HSKGVFSIAFQP-DGSLAATGGLDSLGRV 329 (459)
T ss_pred hhhheeeeecCCCceeeec----ccccchhhcccccch---hhHhhcc---cccccceeEecC-CCceeeccCccchhhe
Confidence 9999999999999999999 999999999999862 2333443 677899999999 9999999999999999
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceE
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 432 (540)
||++++.+ .+...+|...|.+++|+|+|..|++|+.|++++|||++....++..... .-+..+.|.|.. +.+
T Consensus 330 WDlRtgr~-----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~--g~f 402 (459)
T KOG0272|consen 330 WDLRTGRC-----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE--GYF 402 (459)
T ss_pred eecccCcE-----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC--CeE
Confidence 99999985 4555779999999999999999999999999999999988887775544 556678999832 379
Q ss_pred EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
|++++.|++++||...+..+.. .+.||.+.|.++.+++|+.++++++.|.++++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~k-------sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLK-------SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcccch-------hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999888643 6789999999999999999999999999999995
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.2e-40 Score=278.83 Aligned_cols=287 Identities=14% Similarity=0.194 Sum_probs=245.4
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK 223 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~ 223 (540)
+.+.||..+|.++.+.+.+. .+.+++.|+.+.+||.. +.+.-..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr-------------------------------~ivSaSqDGklIvWDs~TtnK~haipl~s 97 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSR-------------------------------RIVSASQDGKLIVWDSFTTNKVHAIPLPS 97 (343)
T ss_pred EEecccccceeeeEecCCcC-------------------------------eEEeeccCCeEEEEEcccccceeEEecCc
Confidence 45679999999999988752 57899999999999765 4466667
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
..|..++|+| +|+++|+|+.|+...||++.+.+......... ...+|.+.+.|+.|.+| ..|+++ +.|.+..
T Consensus 98 ~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r--~l~gHtgylScC~f~dD-~~ilT~----SGD~TCa 169 (343)
T KOG0286|consen 98 SWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSR--ELAGHTGYLSCCRFLDD-NHILTG----SGDMTCA 169 (343)
T ss_pred eeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeee--eecCccceeEEEEEcCC-CceEec----CCCceEE
Confidence 8999999999 69999999999999999998663221111111 11699999999999885 577888 9999999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
+||++++ +.+..+.+ |.+.|.+++++|.+++.+++|+.|+..++||++.+.+ .+.+ .+|...|+++.|.
T Consensus 170 lWDie~g---~~~~~f~G---H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---~qtF--~ghesDINsv~ff 238 (343)
T KOG0286|consen 170 LWDIETG---QQTQVFHG---HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---VQTF--EGHESDINSVRFF 238 (343)
T ss_pred EEEcccc---eEEEEecC---CcccEEEEecCCCCCCeEEecccccceeeeeccCcce---eEee--cccccccceEEEc
Confidence 9999998 55677775 7888999999998999999999999999999999986 4444 5699999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
|+|.-+++|+.|+++++||++..+.+..+... ..+.++.|+-++ ++|++|..|.++.+||.-.++...
T Consensus 239 P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG---RlLfagy~d~~c~vWDtlk~e~vg------ 309 (343)
T KOG0286|consen 239 PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG---RLLFAGYDDFTCNVWDTLKGERVG------ 309 (343)
T ss_pred cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc---cEEEeeecCCceeEeeccccceEE------
Confidence 99999999999999999999998887765543 567899999888 899999999999999998776533
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
.+.+|.+.|+++..+|||..+++|+.|..++||.
T Consensus 310 -~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 310 -VLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -EeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 5578999999999999999999999999999994
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.4e-40 Score=272.89 Aligned_cols=276 Identities=17% Similarity=0.242 Sum_probs=237.0
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
.-+|+++++|-+||+|...++.+..++. .....|+.+...|+++.||++ ....|++||++++.. ..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq--------h~dsqVNrLeiTpdk~~LAaa-----~~qhvRlyD~~S~np-~P 75 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQ--------HPDSQVNRLEITPDKKDLAAA-----GNQHVRLYDLNSNNP-NP 75 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEe--------cCccceeeEEEcCCcchhhhc-----cCCeeEEEEccCCCC-Cc
Confidence 5689999999999999999999999884 334669999999999999996 678899999998754 36
Q ss_pred EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203 316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD 395 (540)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 395 (540)
+..+++ |...|+++.|.. +|+++++|+.||+++|||++...+ +.. ..|..+|+++..+|+...|++|..+
T Consensus 76 v~t~e~---h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~----qR~--~~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 76 VATFEG---HTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSC----QRN--YQHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred eeEEec---cCCceEEEEEee-cCeEEEecCCCceEEEEeccCccc----chh--ccCCCCcceEEecCCcceEEeecCC
Confidence 677776 567799999999 999999999999999999999664 333 2378999999999999999999999
Q ss_pred CeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE
Q 009203 396 KRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ 473 (540)
Q Consensus 396 g~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~ 473 (540)
|.|++||+....+... ......+.++...|++ .+++.+...|..++|++-+... ...+.....+..|.+.+..+
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg---sml~a~nnkG~cyvW~l~~~~~-~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG---SMLAAANNKGNCYVWRLLNHQT-ASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCC---cEEEEecCCccEEEEEccCCCc-cccceEhhheecccceEEEE
Confidence 9999999998765433 4445778889999988 7999999999999999987443 22222334578899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 474 SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 474 ~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+|||+++||+++.|.+++||+.++- .+.-..+.+|...+++.+||.||.||++|+.|+.+++|++
T Consensus 222 ~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred EECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 99999999999999999999999973 3666678899999999999999999999999999999985
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-39 Score=273.00 Aligned_cols=292 Identities=17% Similarity=0.229 Sum_probs=240.8
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.++++|++.|+.++..+.+..+|++++.|.++.+|++.......-.. .....||...|..++.++||++.+++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~---~r~~~GHsH~v~dv~~s~dg~~alS~---- 81 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVP---VRRLTGHSHFVSDVVLSSDGNFALSA---- 81 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCce---eeeeeccceEecceEEccCCceEEec----
Confidence 35789999999999999778899999999999999997653221110 01116899999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|+.+++||+.++ +..+.|.+ |...|.+++|++ ++..+++|+.|.+|++|++-... ...+....+.+.
T Consensus 82 swD~~lrlWDl~~g---~~t~~f~G---H~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~c----k~t~~~~~~~~W 150 (315)
T KOG0279|consen 82 SWDGTLRLWDLATG---ESTRRFVG---HTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVC----KYTIHEDSHREW 150 (315)
T ss_pred cccceEEEEEecCC---cEEEEEEe---cCCceEEEEecC-CCceeecCCCcceeeeeeecccE----EEEEecCCCcCc
Confidence 99999999999987 44666665 667799999999 99999999999999999998764 244444445889
Q ss_pred eeEEEeccC--CCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 377 VMGVAGMQQ--KQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 377 v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
|.|+.|+|+ ..+|++++.|++|++||+++.+....+ .+.+.+..+.++|++ .++++|+.||.+.+||++.++..
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG---slcasGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG---SLCASGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC---CEEecCCCCceEEEEEccCCcee
Confidence 999999997 689999999999999999988776654 455778899999998 78999999999999999988863
Q ss_pred eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc----c-----ccceeEEEEcCCCC
Q 009203 454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA----H-----QKRVFKAVWHYSHP 524 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----h-----~~~i~~l~~s~~~~ 524 (540)
.. .+|...|.+++|+|+.-+|+.+.. ..|+|||+.+ ...+..+.. . .-.-.+++|++||.
T Consensus 228 ys--------l~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~--~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 228 YS--------LEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLES--KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred Ee--------ccCCCeEeeEEecCCceeEeeccC-CceEEEeccc--hhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence 32 357789999999999887877754 4499999998 555555541 1 12346789999999
Q ss_pred EEEEEEcCCcEEEEeC
Q 009203 525 LLISISSDLNIGLHKI 540 (540)
Q Consensus 525 ~l~s~~~dg~v~iw~l 540 (540)
.|++|-.|+.|++|.+
T Consensus 297 tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEEeeecCCcEEEEEe
Confidence 9999999999999975
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-39 Score=272.04 Aligned_cols=292 Identities=17% Similarity=0.255 Sum_probs=239.9
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------hh
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------HV 218 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~~ 218 (540)
..+.+|...|..+++.+..+ ..+.+++.|.++.+|+.. .-
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~------------------------------~~l~sasrDk~ii~W~L~~dd~~~G~~~r~ 58 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNS------------------------------DILVSASRDKTIIVWKLTSDDIKYGVPVRR 58 (315)
T ss_pred eeecCCCceEEEEEeecCCC------------------------------ceEEEcccceEEEEEEeccCccccCceeee
Confidence 35568889998888887743 256678889999999553 44
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.||+..|..+..++| |++.++++.|+++++||+.+++....+ .||...|.+++|++|.+.|++| +.
T Consensus 59 ~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~~g~~t~~f--------~GH~~dVlsva~s~dn~qivSG----Sr 125 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDLATGESTRRF--------VGHTKDVLSVAFSTDNRQIVSG----SR 125 (315)
T ss_pred eeccceEecceEEccC-CceEEeccccceEEEEEecCCcEEEEE--------EecCCceEEEEecCCCceeecC----CC
Confidence 8999999999999996 999999999999999999999877766 5999999999999999999999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
|.+|.+|+.-.. +...+.... +.+.|.|+.|+|.. ..+|++++.|++|++||+++.+. .....+|++.+
T Consensus 126 DkTiklwnt~g~----ck~t~~~~~-~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-----~~~~~gh~~~v 195 (315)
T KOG0279|consen 126 DKTIKLWNTLGV----CKYTIHEDS-HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-----RTTFIGHSGYV 195 (315)
T ss_pred cceeeeeeeccc----EEEEEecCC-CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-----hhccccccccE
Confidence 999999999853 333333322 27889999999942 77899999999999999999774 22235799999
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
+.+++||||.++++|+.||.+.+||++.++.++.......+.+++|+|.. +.++...+..|+|||+.+.......-
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr----ywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR----YWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc----eeEeeccCCceEEEeccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999986 55555566779999999876432210
Q ss_pred -cccc-ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 458 -GWKQ-ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 458 -~~~~-~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
.... ......-...+++|++||..|++|..|+.|++|.+.
T Consensus 272 ~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 272 LDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 0000 112223345678999999999999999999999875
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-38 Score=284.64 Aligned_cols=321 Identities=16% Similarity=0.218 Sum_probs=263.0
Q ss_pred CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccch---------hc----
Q 009203 153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNH---------VS---- 219 (540)
Q Consensus 153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~~---------~~---- 219 (540)
.|..+|.++++.|.+. ..+++++.|.+.++|+... +|
T Consensus 176 ~~~~~V~~~~WnP~~~------------------------------~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~ 225 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRD------------------------------GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCI 225 (524)
T ss_pred cCCCceEEEecCchhh------------------------------hhhhccCCccceeeeeehhhccccchhhhhhhhh
Confidence 3888888888888742 1456677777777775431 11
Q ss_pred --ccc----cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe
Q 009203 220 --SLH----KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH 293 (540)
Q Consensus 220 --~~h----~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~ 293 (540)
.++ +..|++|+|+.+ |.+||+|+.||.++||+... ..+.++ ..|.++|.++.|+.+|++|+++
T Consensus 226 ~~~~~s~~~nkdVT~L~Wn~~-G~~LatG~~~G~~riw~~~G-~l~~tl--------~~HkgPI~slKWnk~G~yilS~- 294 (524)
T KOG0273|consen 226 REGGKSVPSNKDVTSLDWNND-GTLLATGSEDGEARIWNKDG-NLISTL--------GQHKGPIFSLKWNKKGTYILSG- 294 (524)
T ss_pred hhhcccCCccCCcceEEecCC-CCeEEEeecCcEEEEEecCc-hhhhhh--------hccCCceEEEEEcCCCCEEEec-
Confidence 122 368999999995 99999999999999999864 444444 5799999999999999999999
Q ss_pred ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203 294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
+.|+++.+||..++ ...+.+.. |..+-..+.|- +...|++++.|+.|+++.+....+ ...+ .+|
T Consensus 295 ---~vD~ttilwd~~~g---~~~q~f~~---~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P---~~t~--~GH 358 (524)
T KOG0273|consen 295 ---GVDGTTILWDAHTG---TVKQQFEF---HSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRP---VKTF--IGH 358 (524)
T ss_pred ---cCCccEEEEeccCc---eEEEeeee---ccCCccceEEe--cCceEeecCCCceEEEEEecCCCc---ceee--ecc
Confidence 99999999999887 44555553 45555778887 566799999999999999988764 2333 559
Q ss_pred CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCC------CceEEEEEcCCCeEEEEE
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDF------NLFMVQTGTPGRQLRLYD 446 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~l~~~~~dg~v~i~d 446 (540)
.+.|.++.|+|.|.+|++++.|++++||.......... +.+...+..+.|+|.++ .+..+++++.|++|++||
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 99999999999999999999999999999887666544 33445778888888653 236899999999999999
Q ss_pred CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE
Q 009203 447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL 526 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l 526 (540)
+..+.+.. .+..|+.+|.+++|+|+|+|+|+|+.||.|.||+... ++.++.+.+ .+.|..++|+.+|.+|
T Consensus 439 v~~gv~i~-------~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~--~~l~~s~~~-~~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 439 VESGVPIH-------TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT--GKLVKSYQG-TGGIFELCWNAAGDKL 508 (524)
T ss_pred ccCCceeE-------eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc--hheeEeecC-CCeEEEEEEcCCCCEE
Confidence 99887644 4568999999999999999999999999999999998 788888775 4469999999999999
Q ss_pred EEEEcCCcEEEEeC
Q 009203 527 ISISSDLNIGLHKI 540 (540)
Q Consensus 527 ~s~~~dg~v~iw~l 540 (540)
..+-.|+.+++-||
T Consensus 509 ~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 509 GACASDGSVCVLDL 522 (524)
T ss_pred EEEecCCCceEEEe
Confidence 99999999999875
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.9e-40 Score=291.50 Aligned_cols=280 Identities=20% Similarity=0.314 Sum_probs=241.1
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
+-+|..|.|.|+ |+.|++|+..|.+.+|+...-. ++.....|..+|+++.|+++|.++++| +.+|.|
T Consensus 96 kc~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fn--------FEtilQaHDs~Vr~m~ws~~g~wmiSg----D~gG~i 162 (464)
T KOG0284|consen 96 KCPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFN--------FETILQAHDSPVRTMKWSHNGTWMISG----DKGGMI 162 (464)
T ss_pred ccceeeEEEcCC-CceeEeecccccEEEecCceee--------HHHHhhhhcccceeEEEccCCCEEEEc----CCCceE
Confidence 357999999995 9999999999999999984322 111225899999999999999999999 999999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
++|+.+- ..+..+.. +|...|.+++|+| +...|++++.||+|+|||....+. ...+ .+|.-.|.+++|
T Consensus 163 KyWqpnm----nnVk~~~a--hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~ke---e~vL--~GHgwdVksvdW 230 (464)
T KOG0284|consen 163 KYWQPNM----NNVKIIQA--HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKE---ERVL--RGHGWDVKSVDW 230 (464)
T ss_pred Eecccch----hhhHHhhH--hhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCch---hhee--ccCCCCcceecc
Confidence 9999874 22444444 5668899999999 888999999999999999998764 2333 679999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ 461 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 461 (540)
+|.-.+|++++.|..|++||.+++.++.. +.+...++.+.|+|.+ .+|++++.|..+++||+++.+...
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~---N~Llt~skD~~~kv~DiR~mkEl~------- 300 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG---NWLLTGSKDQSCKVFDIRTMKELF------- 300 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC---CeeEEccCCceEEEEehhHhHHHH-------
Confidence 99999999999999999999999999876 6667889999999988 699999999999999999666433
Q ss_pred ccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 462 ESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 462 ~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+.+|...|+++.|+| ...+|.+|+.||.|..|.+.. .+++..+ .+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~--~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL--EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEeccc--cccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 5578999999999999 567888999999999999985 4555554 47999999999999999999999999999994
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-39 Score=282.70 Aligned_cols=290 Identities=18% Similarity=0.283 Sum_probs=251.8
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
+-+.||..+|+.+-|+|+ -.++++++.|++|++||..+++....+ .||.+.|.+++|+..|++|+++
T Consensus 102 ~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~L--------rGHt~sv~di~~~a~Gk~l~tc---- 168 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSL--------RGHTDSVFDISFDASGKYLATC---- 168 (406)
T ss_pred hhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhh--------hccccceeEEEEecCccEEEec----
Confidence 345789999999999995 889999999999999999999987666 6999999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|-.+.+||..+. ..+++.+.+ |.-.|.++.|-| .|++|++++.|.+|+.|++.++.+ ...+ .+|...
T Consensus 169 SsDl~~~LWd~~~~--~~c~ks~~g---h~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c---v~t~--~~h~ew 237 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTF--FRCIKSLIG---HEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC---VKTF--PGHSEW 237 (406)
T ss_pred CCccchhheeHHHH--HHHHHHhcC---cccceeeEEEEe-cCCeeeecccccceeEEeccccee---EEec--cCchHh
Confidence 99999999999864 455666555 556799999999 899999999999999999999987 3444 569999
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCee---eeeccCccEEEEeec----------CCCCCceEEEEEcCCCeEE
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD---FKHQIESKCMSVLPN----------PCDFNLFMVQTGTPGRQLR 443 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~dg~v~ 443 (540)
|..+..+.||.++++++.|.+|++|-+.++.+. ..+++...+.+++.. |.+..+.++++++.|++|+
T Consensus 238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 999999999999999999999999999998553 334444444443321 1122346999999999999
Q ss_pred EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH 523 (540)
Q Consensus 444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~ 523 (540)
+||+.++.+.+ ++.+|.+.|..++|+|.|+||+++.+|+++++||+.+ .++..++..|..-|++++|+.+.
T Consensus 318 ~wdv~tg~cL~-------tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~--~~cmk~~~ah~hfvt~lDfh~~~ 388 (406)
T KOG0295|consen 318 IWDVSTGMCLF-------TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN--LQCMKTLEAHEHFVTSLDFHKTA 388 (406)
T ss_pred EEeccCCeEEE-------EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc--ceeeeccCCCcceeEEEecCCCC
Confidence 99999998766 5578999999999999999999999999999999998 88999999999999999999999
Q ss_pred CEEEEEEcCCcEEEEe
Q 009203 524 PLLISISSDLNIGLHK 539 (540)
Q Consensus 524 ~~l~s~~~dg~v~iw~ 539 (540)
.+++||+-|.++++|.
T Consensus 389 p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceEEeccccceeeeee
Confidence 9999999999999995
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.6e-39 Score=279.25 Aligned_cols=288 Identities=18% Similarity=0.273 Sum_probs=246.2
Q ss_pred eccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEE
Q 009203 213 HTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSA 292 (540)
Q Consensus 213 ~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~ 292 (540)
|....++.||.+.|.|+++.| +..+|++|+.|++++|||+.+++...++ +||...|..+++++-..+|+++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltl--------tGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTL--------TGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred ceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEee--------cchhheeeeeeecccCceEEEe
Confidence 555688999999999999999 6999999999999999999999887777 7899999999999999999999
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
+.|+.|+.||+... +.++...+ |-+.|.|++.+| .-+.|++|+.|.++++||+++... .....+
T Consensus 212 ----gedk~VKCwDLe~n---kvIR~YhG---HlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~-----V~~l~G 275 (460)
T KOG0285|consen 212 ----GEDKQVKCWDLEYN---KVIRHYHG---HLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS-----VHVLSG 275 (460)
T ss_pred ----cCCCeeEEEechhh---hhHHHhcc---ccceeEEEeccc-cceeEEecCCcceEEEeeecccce-----EEEecC
Confidence 99999999999975 44555544 667799999999 889999999999999999999864 444477
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
|...|.++.+.|-...+++|+.|++|++||++.|+.... ..+...+.+++.+|.. ..+++++.| .|+-|++..+.
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e---~~fASas~d-nik~w~~p~g~ 351 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE---NLFASASPD-NIKQWKLPEGE 351 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch---hhhhccCCc-cceeccCCccc
Confidence 999999999999888999999999999999999988665 4456778899999986 466776665 78999998776
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc--------ccccceeEEEEcCCC
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR--------AHQKRVFKAVWHYSH 523 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--------~h~~~i~~l~~s~~~ 523 (540)
... .+.+|...|++++...|| ++++|+++|.+.+||..+ +...+... .....|++.+|...|
T Consensus 352 f~~-------nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwks--g~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 352 FLQ-------NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS--GHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred hhh-------ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCc--CcccccccccccCCccccccceeEEeecccC
Confidence 432 567899999999998765 888999999999999997 33333221 124579999999999
Q ss_pred CEEEEEEcCCcEEEEe
Q 009203 524 PLLISISSDLNIGLHK 539 (540)
Q Consensus 524 ~~l~s~~~dg~v~iw~ 539 (540)
..|++|..|.+|++|+
T Consensus 422 ~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 422 SRLITGEADKTIKMYK 437 (460)
T ss_pred ceEEeccCCcceEEEe
Confidence 9999999999999996
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=261.19 Aligned_cols=292 Identities=20% Similarity=0.281 Sum_probs=237.1
Q ss_pred hhcccccCceEEEEEecCC-CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 217 HVSSLHKRKLRSLSLNPVN-EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~-~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
+.+.||.+.|..++|+| + |.+||+|+.|+.|+||+...+.. .+...... .+|+..|.+++|+|.|++|+++
T Consensus 8 ~~~~gh~~r~W~~awhp-~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld---~~hkrsVRsvAwsp~g~~La~a--- 79 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHP-GKGVILASCGTDKAVRIWSTSSGDS-WTCKTVLD---DGHKRSVRSVAWSPHGRYLASA--- 79 (312)
T ss_pred EeecCCCCcEEEEEecc-CCceEEEeecCCceEEEEecCCCCc-EEEEEecc---ccchheeeeeeecCCCcEEEEe---
Confidence 45689999999999999 5 78999999999999999986332 23322222 4899999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.|.++.||.-..+ ..+++..+++ |...|.|++|++ +|++||+++.|..|.||.+..+........+ ..|..
T Consensus 80 -SFD~t~~Iw~k~~~-efecv~~lEG---HEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL--~~Htq 151 (312)
T KOG0645|consen 80 -SFDATVVIWKKEDG-EFECVATLEG---HENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVL--QEHTQ 151 (312)
T ss_pred -eccceEEEeecCCC-ceeEEeeeec---cccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeee--ccccc
Confidence 99999999987744 3477888887 778999999999 9999999999999999999866542223333 56999
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCC-C--Ceeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGV-G--RADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
.|..+.|+|...+|++++.|.+|++|+-.. + .+..... ....+.++.|++.+ ..|++++.|++|+||-..+.-
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G---~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG---SRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC---ceEEEecCCcceEeeeeccCc
Confidence 999999999999999999999999998773 2 2333333 34588899999987 689999999999999866221
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc----cc-cccccccceeEEEEcCC-CCE
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP----SQ-SIRAHQKRVFKAVWHYS-HPL 525 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~----~~-~~~~h~~~i~~l~~s~~-~~~ 525 (540)
..-|...+..+.|. ...|++++.|+.|++|.-......+ +. .-..|...|++++|+|. ..+
T Consensus 229 -----------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 229 -----------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred -----------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCc
Confidence 13467789999997 5589999999999999877521122 21 23468889999999995 579
Q ss_pred EEEEEcCCcEEEEeC
Q 009203 526 LISISSDLNIGLHKI 540 (540)
Q Consensus 526 l~s~~~dg~v~iw~l 540 (540)
|++|+.||.|++|.+
T Consensus 296 L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 296 LASGGDDGIVNFWEL 310 (312)
T ss_pred eeecCCCceEEEEEe
Confidence 999999999999975
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2e-39 Score=293.84 Aligned_cols=290 Identities=17% Similarity=0.269 Sum_probs=246.8
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
+.+.||+..|+++.|.|-.+.+|++|+.|+.|+||++-. +.++.++ .||..+|.+++|+++|..++++
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf--------~gH~k~Vrd~~~s~~g~~fLS~--- 276 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF--------KGHRKPVRDASFNNCGTSFLSA--- 276 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh--------hcchhhhhhhhccccCCeeeee---
Confidence 457899999999999996699999999999999999977 6667777 6999999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.|+.|++||+++| .+...+.. ...++|+.|+|++.+.|++|+.|+.|+.||+++++. .+.. ..|-+
T Consensus 277 -sfD~~lKlwDtETG---~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---vqeY--d~hLg 343 (503)
T KOG0282|consen 277 -SFDRFLKLWDTETG---QVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---VQEY--DRHLG 343 (503)
T ss_pred -ecceeeeeeccccc---eEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---HHHH--Hhhhh
Confidence 99999999999998 55666553 456899999995559999999999999999999985 3333 44889
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
.|..+.|-++|..+++.+.|+.+++|+.+.+-.+.. ......+.++..+|.+ .++++-+.|+.|.+|.+...-..
T Consensus 344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~---~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG---KWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC---CeehhhccCceEEEEeccccccc
Confidence 999999999999999999999999999988766543 2223455677778877 68999999999999997643211
Q ss_pred eeeeccccccCcccc--CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC-CEEEEEE
Q 009203 454 IHAFGWKQESSESQS--ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH-PLLISIS 530 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~-~~l~s~~ 530 (540)
.....+.+|.. .-..+.|||||.+|++|+.||.+.+||..+ .+.+..++.|..++..+.|+|.. ..+|+||
T Consensus 421 ----nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt--~kl~~~lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 421 ----NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT--TKLVSKLKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred ----CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh--hhhhhccccCCcceEEEEecCCCcceeEecc
Confidence 11234566654 467789999999999999999999999998 78999999999999999999976 4799999
Q ss_pred cCCcEEEEe
Q 009203 531 SDLNIGLHK 539 (540)
Q Consensus 531 ~dg~v~iw~ 539 (540)
.||.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=295.30 Aligned_cols=374 Identities=17% Similarity=0.173 Sum_probs=297.1
Q ss_pred CCeeeecC-CcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccceEE-----------ecCCCCeEE
Q 009203 146 GSSTQASP-AAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPLVR-----------TSASPATIH 211 (540)
Q Consensus 146 ~~~~~~~~-h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~d~~i~ 211 (540)
..+++... |+.+|-.+++.|...+.+ +-|..+.-.-+.+......+.+|.+.|..+. ++..|++++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 33444444 999999999999986666 4444444334455555566677777776554 566799999
Q ss_pred Eeccc------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeec---------------------
Q 009203 212 CHTSN------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLS--------------------- 264 (540)
Q Consensus 212 ~~~~~------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~--------------------- 264 (540)
+|++. +++..|...|++++|++| +..+++++.|..+.|||+...+...++..
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 99886 568999999999999997 88888999999999998754321111000
Q ss_pred --------------------------------------------------------------------------------
Q 009203 265 -------------------------------------------------------------------------------- 264 (540)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (540)
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence
Q ss_pred ----------------------ccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc-eeEEeecC
Q 009203 265 ----------------------TTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR-ACVTFLDD 321 (540)
Q Consensus 265 ----------------------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~-~~~~~~~~ 321 (540)
..-....||++.|.++....+|.+|++| +.|.++++|.++.+... .++...
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~----sKD~svilWr~~~~~~~~~~~a~~-- 407 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATG----SKDKSVILWRLNNNCSKSLCVAQA-- 407 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEe----cCCceEEEEEecCCcchhhhhhhh--
Confidence 0000124888889999966678899999 99999999999544221 122222
Q ss_pred CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee----ecccCCcceeEEEeccCCCEEEEEeCCCe
Q 009203 322 KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL----HRNLHSSAVMGVAGMQQKQIVLSAGADKR 397 (540)
Q Consensus 322 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~v~~l~~s~~~~~l~~~~~dg~ 397 (540)
..|.+.|.+++++.....+|++++.|+++++|++...+....+..+ ....|...|++++.+|+..++++||.|.+
T Consensus 408 -~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 408 -NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred -cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 2478889999998766789999999999999999874332222222 22459999999999999999999999999
Q ss_pred EEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 398 IIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 398 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
.++|++..+...... .+...+.++.|+|.+ +.++++|.|++|+||.+.+..+.. ++.||...|..+.|-
T Consensus 487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d---q~laT~SgD~TvKIW~is~fSClk-------T~eGH~~aVlra~F~ 556 (775)
T KOG0319|consen 487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKND---QLLATCSGDKTVKIWSISTFSCLK-------TFEGHTSAVLRASFI 556 (775)
T ss_pred eeeecccCceEEEEeeCCccceEEEEecccc---ceeEeccCCceEEEEEeccceeee-------eecCccceeEeeeee
Confidence 999999977665553 455678899999987 799999999999999999988754 678999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 477 PDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 477 p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+|+.|++++.||-|++|++.+ ..++.++..|.+.|++++-++.+.+++||+.||.|.+|.
T Consensus 557 ~~~~qliS~~adGliKlWnikt--~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 557 RNGKQLISAGADGLIKLWNIKT--NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eCCcEEEeccCCCcEEEEeccc--hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999999999998 899999999999999999999999999999999999995
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-37 Score=272.22 Aligned_cols=329 Identities=15% Similarity=0.222 Sum_probs=277.2
Q ss_pred CCeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcc
Q 009203 146 GSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSS 220 (540)
Q Consensus 146 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~ 220 (540)
.+...+..|+..|.+++.+|..+ .+++++.|-...+|+.. ..+.
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~-------------------------------l~aTGGgDD~AflW~~~~ge~~~elt 103 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNN-------------------------------LVATGGGDDLAFLWDISTGEFAGELT 103 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCc-------------------------------eEEecCCCceEEEEEccCCcceeEec
Confidence 34566779999999999999753 68899999999999654 4478
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
||++.|+|+.|+.| |.+||||..+|.|+||...++.....+.. .-..+.=+.|+|.+..|++| +.||
T Consensus 104 gHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~~~~~--------e~~dieWl~WHp~a~illAG----~~DG 170 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQWKLDQ--------EVEDIEWLKWHPRAHILLAG----STDG 170 (399)
T ss_pred CCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEEEeec--------ccCceEEEEecccccEEEee----cCCC
Confidence 99999999999996 99999999999999999999887666642 22446678999999999999 9999
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
.+.+|.+.+. ...+.+.+ |..++++-.|.| +|++++++..||+|++|+..+++... .+. ........++
T Consensus 171 svWmw~ip~~---~~~kv~~G---h~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~---~~~-~~e~~~~~~~ 239 (399)
T KOG0296|consen 171 SVWMWQIPSQ---ALCKVMSG---HNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLH---KIT-QAEGLELPCI 239 (399)
T ss_pred cEEEEECCCc---ceeeEecC---CCCCcccccccC-CCceEEEEecCceEEEEecCCCceeE---Eec-ccccCcCCcc
Confidence 9999999975 45667776 678899999999 99999999999999999999997522 221 2234567889
Q ss_pred EeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 381 AGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
.++..+..++.|+.++.+++.+..+|+.+.... .....-++.+.|......+.|+|+-||+|.|||+....
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 999999999999999999999998888765543 23445566677766666789999999999999998665
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
.. ....|..+|+.+.|-+ ..+|++++.+|.|+.||.++ +.++.++.+|...|.+++++|+.++++|+|.
T Consensus 320 ~R--------~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt--G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 320 LR--------HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART--GQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred hh--------eeccCCCceEEEEEcC-cchheeeccCceEEeeeccc--cceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 32 2245888999999988 78999999999999999999 8999999999999999999999999999999
Q ss_pred CCcEEEEeC
Q 009203 532 DLNIGLHKI 540 (540)
Q Consensus 532 dg~v~iw~l 540 (540)
|++.+||++
T Consensus 389 D~~a~VF~v 397 (399)
T KOG0296|consen 389 DNTALVFEV 397 (399)
T ss_pred CCeEEEEec
Confidence 999999974
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=265.01 Aligned_cols=288 Identities=19% Similarity=0.255 Sum_probs=240.1
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
..+.||++.|+.+.|+|+ |.+||+|+.|..|.+|++... +....+ .+|.++|..+.|.+|++.|+++
T Consensus 41 m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~l--------kgHsgAVM~l~~~~d~s~i~S~--- 108 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVL--------KGHSGAVMELHGMRDGSHILSC--- 108 (338)
T ss_pred hhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeee--------ccccceeEeeeeccCCCEEEEe---
Confidence 457899999999999995 999999999999999996543 333333 5999999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.|.+|+.||++++ ++...+.+ |...|+++.-+..+..++.+|+.|+++++||++...++ +.+ ...-
T Consensus 109 -gtDk~v~~wD~~tG---~~~rk~k~---h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~---~t~---~~ky 175 (338)
T KOG0265|consen 109 -GTDKTVRGWDAETG---KRIRKHKG---HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI---KTF---ENKY 175 (338)
T ss_pred -cCCceEEEEecccc---eeeehhcc---ccceeeecCccccCCeEEEecCCCceEEEEeecccchh---hcc---ccce
Confidence 99999999999998 44555554 67778888866545677889999999999999987752 222 1456
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
.++++.|...+..+++|+-|+.|++||++.+..++.. .+...++.+..++.+ .++.+-+.|.++++||++-.....
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g---s~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG---SFLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC---CccccccccceEEEEEecccCCCC
Confidence 7999999999999999999999999999998887764 455788899999988 689999999999999998643222
Q ss_pred eeeccccccCcc----ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 455 HAFGWKQESSES----QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 455 ~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
..+. .+.+| ......++|+|+++.+.+|+.|..+++||... ...+..+.+|.+.|++++|+|...+|.+++
T Consensus 253 R~v~---if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~--r~~lyklpGh~gsvn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 253 RCVK---IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS--RRILYKLPGHYGSVNEVDFHPTEPIILSCS 327 (338)
T ss_pred ceEE---EeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc--ccEEEEcCCcceeEEEeeecCCCcEEEEec
Confidence 1111 11222 23456789999999999999999999999997 788999999999999999999999999999
Q ss_pred cCCcEEE
Q 009203 531 SDLNIGL 537 (540)
Q Consensus 531 ~dg~v~i 537 (540)
.|.+|++
T Consensus 328 sdk~i~l 334 (338)
T KOG0265|consen 328 SDKTIYL 334 (338)
T ss_pred cCceeEe
Confidence 9999986
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-38 Score=277.99 Aligned_cols=292 Identities=18% Similarity=0.233 Sum_probs=242.5
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
+++..|++.|+-+.||+ +|++||+++.|.+..||.+..... ..+..+. .||..+|..+.|+||.++|++|
T Consensus 218 qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tl----vgh~~~V~yi~wSPDdryLlaC---- 287 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVH-FKLKKTL----VGHSQPVSYIMWSPDDRYLLAC---- 287 (519)
T ss_pred hhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcc-eeeeeee----ecccCceEEEEECCCCCeEEec----
Confidence 67899999999999999 599999999999999999987665 2222222 5999999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.+..+.+||+.+| .+...+.. .+...+.+++|.| |+..+++|+.|+++..||++.... .... ......
T Consensus 288 g~~e~~~lwDv~tg---d~~~~y~~--~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~-~~W~----gvr~~~ 356 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTG---DLRHLYPS--GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNIL-GNWE----GVRDPK 356 (519)
T ss_pred CchHheeeccCCcc---hhhhhccc--CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchh-hccc----ccccce
Confidence 99999999999998 33444433 2456799999999 999999999999999999987542 1111 113356
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
|.+++.++||+++++.+.|..|++|+..+.........+..++++..+.++ .++++.-.+..+++||+.........
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~---k~~LvnL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDG---KLALVNLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCC---cEEEEEcccCeeEEeecchhhHHHHh
Confidence 999999999999999999999999999887766667778889999999887 78889999999999999976655554
Q ss_pred eccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC-EEEEEEcCCc
Q 009203 457 FGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLN 534 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~ 534 (540)
+|+.+ ...+..-+|.- +..++++|++|+.|+||+..+ ++++..+.||...|++++|+|..+ ++|++|+||+
T Consensus 434 ~Ghkq-----~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s--gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 434 FGHKQ-----GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS--GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred hcccc-----cceEEEeccCCCCcceEEecCCCceEEEEEccC--CceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 44321 12344446643 558999999999999999998 899999999999999999999875 7999999999
Q ss_pred EEEEe
Q 009203 535 IGLHK 539 (540)
Q Consensus 535 v~iw~ 539 (540)
|+||.
T Consensus 507 IRIWg 511 (519)
T KOG0293|consen 507 IRIWG 511 (519)
T ss_pred EEEec
Confidence 99996
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=252.95 Aligned_cols=284 Identities=13% Similarity=0.241 Sum_probs=236.7
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPK 272 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~ 272 (540)
.+++++-|.+|++|... .++....+.|+.+...|| ++.||+++. ..||+||+.++.. +.++ .+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~--------e~ 81 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATF--------EG 81 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEE--------ec
Confidence 58899999999999543 445666788999999997 888888875 5899999998764 2333 58
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
|...|+++.|..+|+++++| +.||+++|||++.. .+.+.++ +.++|+++..+| +...|++|..+|.|+
T Consensus 82 h~kNVtaVgF~~dgrWMyTg----seDgt~kIWdlR~~---~~qR~~~----~~spVn~vvlhp-nQteLis~dqsg~ir 149 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTG----SEDGTVKIWDLRSL---SCQRNYQ----HNSPVNTVVLHP-NQTELISGDQSGNIR 149 (311)
T ss_pred cCCceEEEEEeecCeEEEec----CCCceEEEEeccCc---ccchhcc----CCCCcceEEecC-CcceEEeecCCCcEE
Confidence 99999999999999999999 99999999999974 4444444 468899999999 888999999999999
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee------ee-eccCccEEEEeecC
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD------FK-HQIESKCMSVLPNP 425 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~------~~-~~~~~~~~~~~~~~ 425 (540)
+||+....+...+. ......|.++...|||.+++.+...|.+++|++-+.... .+ ..+...+....++|
T Consensus 150 vWDl~~~~c~~~li----Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 150 VWDLGENSCTHELI----PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred EEEccCCccccccC----CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 99999876522221 234578999999999999999999999999999764432 22 23457889999999
Q ss_pred CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc
Q 009203 426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ 505 (540)
Q Consensus 426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 505 (540)
++ .+|++++.|.+++||+..+. ... ...+.+|...++.++||.||.||++|+.|+.+++|++.. ++.+.
T Consensus 226 d~---k~lat~ssdktv~iwn~~~~-~kl-----e~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~--~k~v~ 294 (311)
T KOG0315|consen 226 DV---KYLATCSSDKTVKIWNTDDF-FKL-----ELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA--GKEVR 294 (311)
T ss_pred CC---cEEEeecCCceEEEEecCCc-eee-----EEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc--Cceee
Confidence 98 89999999999999999976 111 125678999999999999999999999999999999998 78889
Q ss_pred cccccccceeEEEEc
Q 009203 506 SIRAHQKRVFKAVWH 520 (540)
Q Consensus 506 ~~~~h~~~i~~l~~s 520 (540)
.+.+|-....|++..
T Consensus 295 qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 295 QYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCcccccEEEEee
Confidence 999998887777764
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=281.88 Aligned_cols=362 Identities=17% Similarity=0.187 Sum_probs=287.5
Q ss_pred CCCCCeeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCC--CceEEecccccccceEEec---------CCCCe
Q 009203 143 DPSGSSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGT--KRKFEQKEHRELIPLVRTS---------ASPAT 209 (540)
Q Consensus 143 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~---------~~d~~ 209 (540)
.+....++..+|-..|.++.|.....+.. +.|.+..-.-..+. -+.+.+.+|..+|-...++ +.|+.
T Consensus 133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~ 212 (893)
T KOG0291|consen 133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA 212 (893)
T ss_pred CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence 34444456678999999999998866555 45554442222333 2356678999988665544 45889
Q ss_pred EEEeccc---------------------------------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEE
Q 009203 210 IHCHTSN---------------------------------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRL 250 (540)
Q Consensus 210 i~~~~~~---------------------------------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~i 250 (540)
+.+|... +-+......|+|.+|++ +..+||+|-..|...+
T Consensus 213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~L 291 (893)
T KOG0291|consen 213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGL 291 (893)
T ss_pred EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEE
Confidence 9999432 01233347899999999 6999999999999999
Q ss_pred EEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCccccee
Q 009203 251 WQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIIN 330 (540)
Q Consensus 251 w~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 330 (540)
|.+..-.++..+. -...+|..++|+..|++|+.|+ +.-|.+.||++.+. ...++.. .|...++
T Consensus 292 yelP~f~lih~LS--------is~~~I~t~~~N~tGDWiA~g~---~klgQLlVweWqsE-----sYVlKQQ-gH~~~i~ 354 (893)
T KOG0291|consen 292 YELPDFNLIHSLS--------ISDQKILTVSFNSTGDWIAFGC---SKLGQLLVWEWQSE-----SYVLKQQ-GHSDRIT 354 (893)
T ss_pred EecCCceEEEEee--------cccceeeEEEecccCCEEEEcC---CccceEEEEEeecc-----ceeeecc-cccccee
Confidence 9999877666663 2345689999999999999983 55689999999975 2223222 3677899
Q ss_pred EEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee
Q 009203 331 SIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF 410 (540)
Q Consensus 331 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 410 (540)
+++++| ||.++++|+.||.|+|||...+-| ..++ ..|++.|+.+.|+..|+.+++.+.||+|+.||+...+...
T Consensus 355 ~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC---~vTF--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 355 SLAYSP-DGQLIATGAEDGKVKVWNTQSGFC---FVTF--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred eEEECC-CCcEEEeccCCCcEEEEeccCceE---EEEe--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 999999 999999999999999999999976 4444 5599999999999999999999999999999999888876
Q ss_pred eeccC--ccEEEEeecCCCCCceEEEEEcCCC-eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203 411 KHQIE--SKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA 487 (540)
Q Consensus 411 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 487 (540)
++..+ ....+++.+|.+ .++++|+.|. .|.+|++.+++..- .+.||.++|.+++|+|+|..|++|+.
T Consensus 429 Tft~P~p~QfscvavD~sG---elV~AG~~d~F~IfvWS~qTGqllD-------iLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSG---ELVCAGAQDSFEIFVWSVQTGQLLD-------ILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred eecCCCceeeeEEEEcCCC---CEEEeeccceEEEEEEEeecCeeee-------hhcCCCCcceeeEEccccCeEEeccc
Confidence 65544 455678888877 6788888776 49999999998532 67899999999999999999999999
Q ss_pred CCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 488 DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 488 dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|.+|++||+-.. ...+.++. +...+..++|+|||+-|+++..||.|.+||+
T Consensus 499 DkTVRiW~if~s-~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 499 DKTVRIWDIFSS-SGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred cceEEEEEeecc-CceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 999999999863 23444554 5667999999999999999999999999985
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.6e-37 Score=296.77 Aligned_cols=282 Identities=17% Similarity=0.229 Sum_probs=231.1
Q ss_pred CCeEEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC
Q 009203 207 PATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG 286 (540)
Q Consensus 207 d~~i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 286 (540)
.-.+.+|+.. --...++|..|++| +.+||.|..|..|++|.+...+ +..+. +..+-
T Consensus 366 lpSic~YT~~----nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~k-l~~lk---------------~~~~l--- 421 (707)
T KOG0263|consen 366 LPSICMYTFH----NTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKK-LKKLK---------------DASDL--- 421 (707)
T ss_pred CCcEEEEEEE----EcCCcceeEeecCC-cchhhccccccEEEEEecchhh-hcccc---------------chhhh---
Confidence 3456666432 22256999999996 8899999999999999997542 12221 11111
Q ss_pred CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203 287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK 366 (540)
Q Consensus 287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 366 (540)
..+=+. +.|-.+.+.|..+. .....+.+ |.++|..+.|+| +.++|++++.|++|++|.+.+..+
T Consensus 422 ~~~d~~----sad~~~~~~D~~~~---~~~~~L~G---H~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~----- 485 (707)
T KOG0263|consen 422 SNIDTE----SADVDVDMLDDDSS---GTSRTLYG---HSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSC----- 485 (707)
T ss_pred cccccc----ccchhhhhccccCC---ceeEEeec---CCCceeeeeecc-cccceeeccCCcceeeeeccccee-----
Confidence 112222 34444666666654 22333444 889999999999 999999999999999999999875
Q ss_pred eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203 367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLY 445 (540)
Q Consensus 367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 445 (540)
.+...+|..+|.++.|+|.|.++++++.|++.++|......++..+. +-..+.++.|+|+. .|+++|+.|.+|++|
T Consensus 486 ~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs---~Y~aTGSsD~tVRlW 562 (707)
T KOG0263|consen 486 LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS---NYVATGSSDRTVRLW 562 (707)
T ss_pred EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc---cccccCCCCceEEEE
Confidence 34446899999999999999999999999999999999888776644 44677789999987 799999999999999
Q ss_pred ECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCE
Q 009203 446 DIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPL 525 (540)
Q Consensus 446 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~ 525 (540)
|+.++.... .+.||.++|++++|||+|++|++|+.||.|.+||+.+ +.++..+.+|.+.|.+|.|+.||..
T Consensus 563 Dv~~G~~VR-------iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~--~~~v~~l~~Ht~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 563 DVSTGNSVR-------IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN--GSLVKQLKGHTGTIYSLSFSRDGNV 633 (707)
T ss_pred EcCCCcEEE-------EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC--CcchhhhhcccCceeEEEEecCCCE
Confidence 999988644 4578999999999999999999999999999999998 7999999999999999999999999
Q ss_pred EEEEEcCCcEEEEeC
Q 009203 526 LISISSDLNIGLHKI 540 (540)
Q Consensus 526 l~s~~~dg~v~iw~l 540 (540)
||+||.|.+|++||+
T Consensus 634 Lasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 634 LASGGADNSVRLWDL 648 (707)
T ss_pred EEecCCCCeEEEEEc
Confidence 999999999999996
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-36 Score=262.60 Aligned_cols=279 Identities=18% Similarity=0.252 Sum_probs=244.7
Q ss_pred cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccCce
Q 009203 152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKRKL 226 (540)
Q Consensus 152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V 226 (540)
.+|..+|..+-++|..+ .+++++.|.+|++||.. ..++||++.|
T Consensus 105 ~g~r~~vt~v~~hp~~~-------------------------------~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv 153 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEA-------------------------------LVVSASEDATIKVFDTETGELERSLRGHTDSV 153 (406)
T ss_pred hccccceeeeeeccCce-------------------------------EEEEecCCceEEEEEccchhhhhhhhccccce
Confidence 57888999999988753 57888899999999765 5689999999
Q ss_pred EEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
..++|+. .|++|++++.|-.+++||..+. ++...+ .+|...|.+++|-|.|++|+++ +.|.+|+.|
T Consensus 154 ~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~--------~gh~h~vS~V~f~P~gd~ilS~----srD~tik~W 220 (406)
T KOG0295|consen 154 FDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSL--------IGHEHGVSSVFFLPLGDHILSC----SRDNTIKAW 220 (406)
T ss_pred eEEEEec-CccEEEecCCccchhheeHHHHHHHHHHh--------cCcccceeeEEEEecCCeeeec----ccccceeEE
Confidence 9999999 5999999999999999999863 333333 5899999999999999999999 999999999
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ 385 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 385 (540)
++.++ .++.++.+ |...|..++.+. ||.++++++.|.+|++|-+.++++ ...+ ..|.-+|.+++|-|.
T Consensus 221 e~~tg---~cv~t~~~---h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~---k~~l--R~hEh~vEci~wap~ 288 (406)
T KOG0295|consen 221 ECDTG---YCVKTFPG---HSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQC---KAEL--REHEHPVECIAWAPE 288 (406)
T ss_pred ecccc---eeEEeccC---chHhEEEEEecC-CeeEEEecCCCceEEEEEeccchh---hhhh--hccccceEEEEeccc
Confidence 99997 78888886 667899999999 999999999999999999999976 2333 348889999999663
Q ss_pred ---------------CCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 386 ---------------KQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 386 ---------------~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
++++.+++.|++|++||+.++.+++. ..+...+..++|+|.+ +||+++..|+++++||+++
T Consensus 289 ~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G---kyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 289 SSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG---KYILSCADDKTLRVWDLKN 365 (406)
T ss_pred ccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC---eEEEEEecCCcEEEEEecc
Confidence 35899999999999999999999887 4567889999999988 8999999999999999999
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI 496 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~ 496 (540)
.++.. .+..|..-|+++.|+.+..++++|+-|..+++|.-
T Consensus 366 ~~cmk-------~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 LQCMK-------TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeee-------ccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 88755 45678899999999999999999999999999964
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-36 Score=272.43 Aligned_cols=290 Identities=19% Similarity=0.306 Sum_probs=239.3
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--Cc--ceeeccccc--CCCCCCCCceeEEEecCCCeEEEEee
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SG--ASLLSTTDC--LSPKHRRWPEDIAWHPQGNSLFSAHT 294 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~--~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~~~ 294 (540)
.|+.+|.+.+|+|-...+|++|+.|-+.++|++...- +. ..+...... ........|++++|+.+|..||+|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG-- 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG-- 253 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe--
Confidence 3999999999999634499999999999999997511 11 111111100 001223679999999999999999
Q ss_pred cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
+.||.+++|+... ..+..+. .|+++|.++.|+. .|++|++++.|+++.+||.-++.. .+.+ ..|.
T Consensus 254 --~~~G~~riw~~~G----~l~~tl~---~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~---~q~f--~~~s 318 (524)
T KOG0273|consen 254 --SEDGEARIWNKDG----NLISTLG---QHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTV---KQQF--EFHS 318 (524)
T ss_pred --ecCcEEEEEecCc----hhhhhhh---ccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceE---EEee--eecc
Confidence 9999999999984 3345555 3889999999999 999999999999999999998875 2333 3377
Q ss_pred cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
.+-.++.|-. ...+++++.|+.|+++.+....++.. ..+.+.+.++.|+|.+ .+|++++.|++++||.+.....
T Consensus 319 ~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg---~LLaS~SdD~TlkiWs~~~~~~- 393 (524)
T KOG0273|consen 319 APALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG---SLLASCSDDGTLKIWSMGQSNS- 393 (524)
T ss_pred CCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC---ceEEEecCCCeeEeeecCCCcc-
Confidence 7778889964 56789999999999999988777655 3467889999999988 7999999999999999876653
Q ss_pred eeeeccccccCccccCeEEEEEcCCC---------CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC
Q 009203 454 IHAFGWKQESSESQSALINQSWSPDG---------LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP 524 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~sp~g---------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~ 524 (540)
...+..|...|..+.|+|+| ..|++++.|++|++||+.. +.++.+|..|..+|.+++|+|+|+
T Consensus 394 ------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 394 ------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQEPVYSVAFSPNGR 465 (524)
T ss_pred ------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC--CceeEeeccCCCceEEEEecCCCc
Confidence 22567899999999999975 4799999999999999998 899999999999999999999999
Q ss_pred EEEEEEcCCcEEEEeC
Q 009203 525 LLISISSDLNIGLHKI 540 (540)
Q Consensus 525 ~l~s~~~dg~v~iw~l 540 (540)
++++|+.||.|.||+.
T Consensus 466 ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWST 481 (524)
T ss_pred EEEecCCCCeeEeccc
Confidence 9999999999999974
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.3e-37 Score=268.04 Aligned_cols=273 Identities=19% Similarity=0.222 Sum_probs=229.6
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
..++|+|+.+.. ..+++|..|++|+|||..+..+...+ .||++.|.|+.|. .+.|++| +.|.+
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L--------~GHtGSVLCLqyd--~rviisG----SSDsT 258 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKIL--------TGHTGSVLCLQYD--ERVIVSG----SSDST 258 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhh--------hcCCCcEEeeecc--ceEEEec----CCCce
Confidence 457899999963 46899999999999999998887777 6999999999985 4689998 99999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
|++||++++ +++.++- ||...|..+.|+ +.++++++.|.+|.+||+...........+ .+|...|+.+.
T Consensus 259 vrvWDv~tg---e~l~tli---hHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVL--vGHrAaVNvVd 327 (499)
T KOG0281|consen 259 VRVWDVNTG---EPLNTLI---HHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVVD 327 (499)
T ss_pred EEEEeccCC---chhhHHh---hhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHH--hhhhhheeeec
Confidence 999999997 4566655 478889999996 479999999999999999887632222222 56999999999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
|+ .+++++++.|.+|++|++.+++.+..... .-.+.++.+.. +++++|+.|.+|++||+..+.+..
T Consensus 328 fd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~-----rlvVSGSSDntIRlwdi~~G~cLR------ 394 (499)
T KOG0281|consen 328 FD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRD-----RLVVSGSSDNTIRLWDIECGACLR------ 394 (499)
T ss_pred cc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccC-----eEEEecCCCceEEEEeccccHHHH------
Confidence 96 47999999999999999999998877444 34444555543 799999999999999999888644
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc-------ccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK-------PSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~-------~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
.+.||..-|.++.| |.+.+++|+.||.|+|||+..+... ++.++..|.+.|..+.| |...+++++.|.
T Consensus 395 -vLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 -VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred -HHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 56899999999999 6789999999999999999874322 56677789999999999 677899999999
Q ss_pred cEEEEeC
Q 009203 534 NIGLHKI 540 (540)
Q Consensus 534 ~v~iw~l 540 (540)
+|.|||+
T Consensus 470 tILiWdF 476 (499)
T KOG0281|consen 470 TILIWDF 476 (499)
T ss_pred eEEEEEc
Confidence 9999996
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=292.44 Aligned_cols=295 Identities=23% Similarity=0.322 Sum_probs=247.0
Q ss_pred EEEeccchhcccc-cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecCC
Q 009203 210 IHCHTSNHVSSLH-KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQG 286 (540)
Q Consensus 210 i~~~~~~~~~~~h-~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 286 (540)
...|.....+.+| ...|+|+.|+|+ |.+|++++.|+.+++|+..... ....+ .+|...|.+++|+|++
T Consensus 145 ~~~~~~~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--------~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 145 SRVFSLEQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLREL--------SGHTRGVSDVAFSPDG 215 (456)
T ss_pred cccceeeeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccc--------cccccceeeeEECCCC
Confidence 3344444455554 789999999996 8889999999999999996655 22222 5899999999999999
Q ss_pred CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203 287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK 366 (540)
Q Consensus 287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 366 (540)
.+++++ +.|++|+|||+... ..++..+.+ |...|++++|+| .++++++|+.|++|+|||++++++ ..
T Consensus 216 ~~l~s~----s~D~tiriwd~~~~--~~~~~~l~g---H~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~---~~ 282 (456)
T KOG0266|consen 216 SYLLSG----SDDKTLRIWDLKDD--GRNLKTLKG---HSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGEC---VR 282 (456)
T ss_pred cEEEEe----cCCceEEEeeccCC--CeEEEEecC---CCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeE---EE
Confidence 999999 99999999999433 366777776 778899999999 789999999999999999999875 33
Q ss_pred eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCC--eeeeec-c-Cc-cEEEEeecCCCCCceEEEEEcCCCe
Q 009203 367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGR--ADFKHQ-I-ES-KCMSVLPNPCDFNLFMVQTGTPGRQ 441 (540)
Q Consensus 367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~-~-~~-~~~~~~~~~~~~~~~~l~~~~~dg~ 441 (540)
.+ .+|.+.|++++|++++++|++++.|+.|++||+.++. +..... . .. .+..+.|+|++ .++++++.|+.
T Consensus 283 ~l--~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~---~~ll~~~~d~~ 357 (456)
T KOG0266|consen 283 KL--KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG---KYLLSASLDRT 357 (456)
T ss_pred ee--eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC---cEEEEecCCCe
Confidence 33 5699999999999999999999999999999999998 323322 1 12 57889999988 79999999999
Q ss_pred EEEEECCCCcceeeeeccccccCcccc---CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEE
Q 009203 442 LRLYDIRLRQTEIHAFGWKQESSESQS---ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKA 517 (540)
Q Consensus 442 v~i~d~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l 517 (540)
+++||+......... .+|.. .+.+..+++.|.++++|+.|+.|++||+.+ +..+..+.+| ...+..+
T Consensus 358 ~~~w~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s--~~~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTY-------TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS--GGILQRLEGHSKAAVSDL 428 (456)
T ss_pred EEEEEccCCcceeee-------cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc--cchhhhhcCCCCCceecc
Confidence 999999988765543 33444 344556688999999999999999999998 7888899999 8899999
Q ss_pred EEcCCCCEEEEEE--cCCcEEEEeC
Q 009203 518 VWHYSHPLLISIS--SDLNIGLHKI 540 (540)
Q Consensus 518 ~~s~~~~~l~s~~--~dg~v~iw~l 540 (540)
.|+|..+++++++ .|+.+++|..
T Consensus 429 ~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 429 SSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccCCCcCeeeecCcCCCceEEEecC
Confidence 9999999999998 7999999974
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8e-35 Score=245.24 Aligned_cols=294 Identities=14% Similarity=0.278 Sum_probs=232.4
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc---------hh
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN---------HV 218 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~---------~~ 218 (540)
.+.+++|...+-.++++|.. ...+++.+.|+.|++|+.. .+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~------------------------------g~ilAscg~Dk~vriw~~~~~~s~~ck~vl 56 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGK------------------------------GVILASCGTDKAVRIWSTSSGDSWTCKTVL 56 (312)
T ss_pred EEeecCCCCcEEEEEeccCC------------------------------ceEEEeecCCceEEEEecCCCCcEEEEEec
Confidence 34567888888888888761 1368899999999999654 22
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
-.+|+..|.+++|+|. |++||+|+.|.++.||.-..++- ...... .||...|.+++|+++|.+||++ +.
T Consensus 57 d~~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~ef--ecv~~l----EGHEnEVK~Vaws~sG~~LATC----SR 125 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEF--ECVATL----EGHENEVKCVAWSASGNYLATC----SR 125 (312)
T ss_pred cccchheeeeeeecCC-CcEEEEeeccceEEEeecCCCce--eEEeee----eccccceeEEEEcCCCCEEEEe----eC
Confidence 3689999999999995 99999999999999998775542 222221 6999999999999999999999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
|..|.||.+..+....+...++. |...|..+.|+| ...+|++++.|.+|++|+-..+.. |. ......+|...|.
T Consensus 126 DKSVWiWe~deddEfec~aVL~~---HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ddd-W~-c~~tl~g~~~TVW 199 (312)
T KOG0645|consen 126 DKSVWIWEIDEDDEFECIAVLQE---HTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDD-WE-CVQTLDGHENTVW 199 (312)
T ss_pred CCeEEEEEecCCCcEEEEeeecc---ccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCC-ee-EEEEecCccceEE
Confidence 99999999998777788888886 667799999999 999999999999999998874221 11 1233367989999
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 458 (540)
+++|++.|..|++++.|++++||-..+.- .......+..+.|. .+ .|++++.|+.|++|.....-. ...+.
T Consensus 200 ~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~-~~----~IaS~ggD~~i~lf~~s~~~d-~p~~~ 270 (312)
T KOG0645|consen 200 SLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD-NG----VIASGGGDDAIRLFKESDSPD-EPSWN 270 (312)
T ss_pred EEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec-cc----ceEeccCCCEEEEEEecCCCC-CchHH
Confidence 99999999999999999999999976322 22333556667777 33 899999999999998774211 01111
Q ss_pred c-ccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEecc
Q 009203 459 W-KQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 459 ~-~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~ 497 (540)
. ......|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus 271 l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 271 LLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1 1133568889999999995 6889999999999999875
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1e-34 Score=273.60 Aligned_cols=285 Identities=22% Similarity=0.319 Sum_probs=240.6
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.+|.++|++++|+|+ +.+|++++.||.|++|++.+++....+ ..|...+..+.|++++++|+++ +
T Consensus 4 ~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~----~ 70 (289)
T cd00200 4 TLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTL--------KGHTGPVRDVAASADGTYLASG----S 70 (289)
T ss_pred HhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEE--------ecCCcceeEEEECCCCCEEEEE----c
Confidence 46799999999999996 899999999999999999887644444 4777888999999999999999 8
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.++.|.+||+.++ .....+.. |...+.++.|++ ++.++++++.|+.|.+||+.+++. ...+ ..|...+
T Consensus 71 ~~~~i~i~~~~~~---~~~~~~~~---~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~---~~~~--~~~~~~i 138 (289)
T cd00200 71 SDKTIRLWDLETG---ECVRTLTG---HTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKC---LTTL--RGHTDWV 138 (289)
T ss_pred CCCeEEEEEcCcc---cceEEEec---cCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEE---EEEe--ccCCCcE
Confidence 9999999999975 23444443 456799999999 788888888899999999997654 2222 3588899
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
.+++|+|++.++++++.|+.|++||++.++.+..... ...+.++.++|++ ..+++++.++.|++||+.......
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i~d~~~~~~~~-- 213 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---EKLLSSSSDGTIKLWDLSTGKCLG-- 213 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---CEEEEecCCCcEEEEECCCCceec--
Confidence 9999999999999888899999999998777665443 3478899999987 578888889999999998755422
Q ss_pred eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203 457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG 536 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~ 536 (540)
.+..|...+.++.|+|++.++++++.||.|++|++.. +.....+..|...|.+++|+|++++|++++.||.|+
T Consensus 214 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 214 -----TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT--GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred -----chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC--ceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 3346777999999999999999988899999999997 677777888999999999999999999999999999
Q ss_pred EEe
Q 009203 537 LHK 539 (540)
Q Consensus 537 iw~ 539 (540)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=280.13 Aligned_cols=318 Identities=17% Similarity=0.232 Sum_probs=241.5
Q ss_pred ceEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCC-cEEEEEeCCceEEEEEcCCCCC-cceeecccccCCC
Q 009203 199 PLVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNE-QLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLSP 271 (540)
Q Consensus 199 ~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~-~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~ 271 (540)
..+++++.|+.+++||.. +.|+||.+.|.++.|+|+-. .+|++|..|++|++||+.+... ...+ .
T Consensus 118 ~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~--------~ 189 (775)
T KOG0319|consen 118 TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM--------I 189 (775)
T ss_pred ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH--------H
Confidence 568889999999999876 66999999999999999632 3689999999999999986543 3333 5
Q ss_pred CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-----CCEEEEEe
Q 009203 272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-----NPCFATGG 346 (540)
Q Consensus 272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~s~~ 346 (540)
.|...|++++|++|+..++++ +.|..+.+||+.+.+ ...++.. ...+-++.+.+ + +.+++|++
T Consensus 190 ~H~S~vtsL~~~~d~~~~ls~----~RDkvi~vwd~~~~~---~l~~lp~----ye~~E~vv~l~-~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 190 LHKSAVTSLAFSEDSLELLSV----GRDKVIIVWDLVQYK---KLKTLPL----YESLESVVRLR-EELGGKGEYIITAG 257 (775)
T ss_pred hhhhheeeeeeccCCceEEEe----ccCcEEEEeehhhhh---hhheech----hhheeeEEEec-hhcCCcceEEEEec
Confidence 899999999999999999999 999999999996542 2222221 12244455544 3 34555666
Q ss_pred cCCcEEEEecCCCCCcc---------------------------------------------------------------
Q 009203 347 SDHAVVLWSERDAEDSW--------------------------------------------------------------- 363 (540)
Q Consensus 347 ~dg~i~iwd~~~~~~~~--------------------------------------------------------------- 363 (540)
.+|.+++||..++.+..
T Consensus 258 ~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~ 337 (775)
T KOG0319|consen 258 GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEES 337 (775)
T ss_pred CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccc
Confidence 56666666554443200
Q ss_pred -----------------ccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-----eeccCccEEEE
Q 009203 364 -----------------KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-----KHQIESKCMSV 421 (540)
Q Consensus 364 -----------------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~ 421 (540)
........+|...|.++....+|.+|++|+.|.++++|.++++.... ...+...+.++
T Consensus 338 ~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav 417 (775)
T KOG0319|consen 338 HLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV 417 (775)
T ss_pred eEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee
Confidence 00011225699999999965678899999999999999985544321 13344566666
Q ss_pred eecCCCCCceEEEEEcCCCeEEEEECCCCcc--eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203 422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT--EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS 499 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~ 499 (540)
+++..+. .++++++.|+++++|++...+. ....+........|...|++++++|+.+++||||.|.+.+||++..
T Consensus 418 a~~~~~a--sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~- 494 (775)
T KOG0319|consen 418 AGSKLGA--SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ- 494 (775)
T ss_pred eecccCc--cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-
Confidence 6655444 4899999999999999986221 1111212224457999999999999999999999999999999996
Q ss_pred CCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 500 ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 500 ~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.....++.+|...|+++.|+|..+.|+|+|.|++|+||.|
T Consensus 495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 8899999999999999999999999999999999999985
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.4e-36 Score=265.42 Aligned_cols=267 Identities=16% Similarity=0.273 Sum_probs=226.6
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
.+.+++..+.+.+|++. .++..|..+|+++.|++ ++.++++|..+|.|++|+..-... ..+. ..|.
T Consensus 110 RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnV-k~~~-------ahh~ 180 (464)
T KOG0284|consen 110 RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNV-KIIQ-------AHHA 180 (464)
T ss_pred eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhh-HHhh-------Hhhh
Confidence 46678888999999775 67899999999999999 599999999999999999875432 2221 3455
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
..|++++|+|+...++++ +.||+|+|||....+. ...+.+ |.-.|.+++|+| ...+|++|+.|..|++|
T Consensus 181 eaIRdlafSpnDskF~t~----SdDg~ikiWdf~~~ke---e~vL~G---HgwdVksvdWHP-~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTC----SDDGTIKIWDFRMPKE---ERVLRG---HGWDVKSVDWHP-TKGLIASGSKDNLVKLW 249 (464)
T ss_pred hhhheeccCCCCceeEEe----cCCCeEEEEeccCCch---hheecc---CCCCcceeccCC-ccceeEEccCCceeEee
Confidence 899999999999999999 9999999999987633 344454 667799999999 88899999999999999
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEE
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMV 433 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 433 (540)
|.+++.| +..+ .+|...|..+.|++++++|++++.|..+++||+++-+.++.+. +...+.++.|+|-..+ +|
T Consensus 250 DprSg~c---l~tl--h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~--lf 322 (464)
T KOG0284|consen 250 DPRSGSC---LATL--HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES--LF 322 (464)
T ss_pred cCCCcch---hhhh--hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc--ce
Confidence 9999998 3333 4599999999999999999999999999999999777777655 6678899999998764 89
Q ss_pred EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203 434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS 499 (540)
Q Consensus 434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~ 499 (540)
.+|+.||.|..|.+...+.... ...+|...|++++|+|-|.+|++|+.|.++++|.-..+
T Consensus 323 tsgg~Dgsvvh~~v~~~~p~~~------i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVGLEEPLGE------IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred eeccCCCceEEEeccccccccC------CCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 9999999999999984433221 23579999999999999999999999999999987653
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-33 Score=256.67 Aligned_cols=373 Identities=16% Similarity=0.167 Sum_probs=276.2
Q ss_pred eeeecCCcceeeEEEEcccccccCCCC-ccEEEEeec---CCCceEEecccccccceEEecCCC-------------CeE
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSD-SEIVEVRDR---GTKRKFEQKEHRELIPLVRTSASP-------------ATI 210 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~d-------------~~i 210 (540)
...-..|+..++-..+.|..-+.+++| .--+++|.. ....+.....-.+.|..+....+. +.+
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 344568999999999999988888433 223333332 222222222223333333332222 344
Q ss_pred EEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC
Q 009203 211 HCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN 287 (540)
Q Consensus 211 ~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 287 (540)
.+||.- .-+.||...|++++|-|...-.++||+.|++|.+|.=.- ..+..+. ..|...|.|+.|+|||.
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----FKFk~s~----r~HskFV~~VRysPDG~ 203 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----FKFKSSF----REHSKFVNCVRYSPDGS 203 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----eeeeecc----cccccceeeEEECCCCC
Confidence 556432 337899999999999997667899999999999997543 3333332 57889999999999999
Q ss_pred eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc--
Q 009203 288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP-- 365 (540)
Q Consensus 288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 365 (540)
+++++ +.||.|.+||=.++ +.+..+.....|++.|.+++|+| |+..|++++.|.+++|||+.+..+..++
T Consensus 204 ~Fat~----gsDgki~iyDGktg---e~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 204 RFATA----GSDGKIYIYDGKTG---EKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred eEEEe----cCCccEEEEcCCCc---cEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeec
Confidence 99999 99999999998887 56777776677899999999999 9999999999999999999876541110
Q ss_pred ------------------------------------ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee
Q 009203 366 ------------------------------------KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD 409 (540)
Q Consensus 366 ------------------------------------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 409 (540)
......+|...|+++..++++.+|++|+.||.|.-||..++..-
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 01123579999999999999999999999999999999988764
Q ss_pred ee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee---eec---------------------ccccc
Q 009203 410 FK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH---AFG---------------------WKQES 463 (540)
Q Consensus 410 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~---~~~---------------------~~~~~ 463 (540)
.. ..+...+.++..+..+ .+++.+.|.++++.++........ .++ ....+
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~----~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESG----ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL 431 (603)
T ss_pred ccccccccceEEEEeecCCC----cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence 33 4455667777766644 578888899999987743221000 000 00001
Q ss_pred C--------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203 464 S--------ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI 535 (540)
Q Consensus 464 ~--------~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v 535 (540)
. .-.....+++++|++..++.|+.||.|+||.+...+......+..|.++|++++++||+.+||+|...+.|
T Consensus 432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 1 11234678899999999999999999999999964344555667899999999999999999999999999
Q ss_pred EEEeC
Q 009203 536 GLHKI 540 (540)
Q Consensus 536 ~iw~l 540 (540)
.+||+
T Consensus 512 v~yd~ 516 (603)
T KOG0318|consen 512 VLYDV 516 (603)
T ss_pred EEEEc
Confidence 99985
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=267.84 Aligned_cols=357 Identities=13% Similarity=0.153 Sum_probs=265.2
Q ss_pred ecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCce-EEecccccccceEEecCCC--------CeEEEeccc---
Q 009203 151 ASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRK-FEQKEHRELIPLVRTSASP--------ATIHCHTSN--- 216 (540)
Q Consensus 151 ~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~d--------~~i~~~~~~--- 216 (540)
.-.+.+.|+++++.|+..+.. .+.+... +.....+. ...-.-...+.++.++++. ..+.+|..-
T Consensus 51 ~~e~~~NI~~ialSp~g~lllavdE~g~~~--lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~ 128 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGTLLLAVDERGRAL--LVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEI 128 (893)
T ss_pred EeecCCceEEEEeCCCceEEEEEcCCCcEE--EEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcch
Confidence 346778899999999977655 2222221 11111111 1111223456677777763 345667221
Q ss_pred ----------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC
Q 009203 217 ----------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG 286 (540)
Q Consensus 217 ----------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 286 (540)
..+.||-+.|+++.|+.| .++|++|+.|-+++||.+...+....... .||.++|.++-|..+.
T Consensus 129 ~~~~~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l------~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 129 KNEFNPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNLFTYAL------NGHKDYVVACFFGANS 201 (893)
T ss_pred hcccCcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccccceEec------cCCCcceEEEEeccCc
Confidence 457899999999999986 99999999999999999988776333322 5999999999999999
Q ss_pred CeEEEEeecCCCCCeEEEEecCCCCC---------------------ce-----e-----EEeecCCCCcccceeEEEEe
Q 009203 287 NSLFSAHTADSGDSQISVLNLNKTKG---------------------RA-----C-----VTFLDDKPHVKGIINSIIFL 335 (540)
Q Consensus 287 ~~l~s~~~~~~~d~~i~vwd~~~~~~---------------------~~-----~-----~~~~~~~~~~~~~v~~~~~~ 335 (540)
..|++. +.||.+.+|....... .+ . ...+. .....|++.+|+
T Consensus 202 ~~l~tv----skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln---~~~~kvtaa~fH 274 (893)
T KOG0291|consen 202 LDLYTV----SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLN---QNSSKVTAAAFH 274 (893)
T ss_pred ceEEEE----ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeec---ccccceeeeecc
Confidence 999999 9999999998771100 00 0 00111 112446666666
Q ss_pred CCCCCEEEEEecCCcE-------------------------------------------EEEecCCCCCccccceeeccc
Q 009203 336 PWENPCFATGGSDHAV-------------------------------------------VLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 336 p~~~~~l~s~~~dg~i-------------------------------------------~iwd~~~~~~~~~~~~~~~~~ 372 (540)
+ ..++||+|-..|.. -||+..... ..+..++
T Consensus 275 ~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----YVlKQQg 348 (893)
T KOG0291|consen 275 K-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----YVLKQQG 348 (893)
T ss_pred C-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-----eeeeccc
Confidence 6 55555555554444 444444432 3455678
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
|...+++++++|||+++++|+.||.|++||...+-|+.++ .+...+..+.|+..+ ..+++.+-||+|+.||+....
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g---~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG---NVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC---CEEEEeecCCeEEeeeecccc
Confidence 9999999999999999999999999999999999997775 456788889998877 789999999999999998766
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
+... +. ........|++.+|.|..+++|+.|. .|.||++++ ++.+..+.||.++|.+++|+|++..|+|+|
T Consensus 426 NfRT-ft-----~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT--GqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 426 NFRT-FT-----SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT--GQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred eeee-ec-----CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec--CeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 4332 21 12233568899999999999999875 799999999 899999999999999999999999999999
Q ss_pred cCCcEEEEeC
Q 009203 531 SDLNIGLHKI 540 (540)
Q Consensus 531 ~dg~v~iw~l 540 (540)
.|.+|++||+
T Consensus 498 WDkTVRiW~i 507 (893)
T KOG0291|consen 498 WDKTVRIWDI 507 (893)
T ss_pred ccceEEEEEe
Confidence 9999999986
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.6e-35 Score=257.75 Aligned_cols=291 Identities=22% Similarity=0.320 Sum_probs=240.9
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC---eEEEEeecC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN---SLFSAHTAD 296 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~---~l~s~~~~~ 296 (540)
.-|.+.|.+|...+ .++++|++||.+++||.. |+...++ .||.++|.+++|.-... .|+++
T Consensus 102 ~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~~-Gk~~~~~--------~Ght~~ik~v~~v~~n~~~~~fvsa---- 165 (423)
T KOG0313|consen 102 FLHDDWVSSVKGAS---KWILTGSYDGTSRIWDLK-GKSIKTI--------VGHTGPIKSVAWVIKNSSSCLFVSA---- 165 (423)
T ss_pred ccchhhhhhhcccC---ceEEEeecCCeeEEEecC-CceEEEE--------ecCCcceeeeEEEecCCccceEEEe----
Confidence 36889999999874 589999999999999986 5555555 59999999999865433 59999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC----------------
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE---------------- 360 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~---------------- 360 (540)
+.|.++++|.++.+.. .+.......+|...|.+++..+ ++..+++|+.|.+|.||+..+..
T Consensus 166 s~Dqtl~Lw~~~~~~~--~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGEN--KVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred cCCceEEEEEecCchh--hhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 9999999999987632 2222222225788999999999 99999999999999999932211
Q ss_pred ----CccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEE
Q 009203 361 ----DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 361 ----~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 436 (540)
...+.......+|..+|.++.|++ ...+++++.|.+|+.||+.++.............++..+|.. .+|++|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~---~Ll~~g 318 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS---KLLASG 318 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc---ceeeec
Confidence 011223445578999999999997 788999999999999999999998888888889999999976 799999
Q ss_pred cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccCCCCccccccccccccee
Q 009203 437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF 515 (540)
Q Consensus 437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~ 515 (540)
+.|..+++||.+++.-.+.. +.+.+|.+.|.++.|+|... .|++|+.|+++++||+++. ..++..+.+|...|.
T Consensus 319 ssdr~irl~DPR~~~gs~v~----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~-k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 319 SSDRHIRLWDPRTGDGSVVS----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-KAPLYDIAGHNDKVL 393 (423)
T ss_pred CCCCceeecCCCCCCCceeE----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC-CCcceeeccCCceEE
Confidence 99999999999988654432 36789999999999999654 5889999999999999984 458999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 516 KAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 516 ~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
++.|+. +.+|++||.|.+|+|+.
T Consensus 394 ~vdW~~-~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 394 SVDWNE-GGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEeccC-CceEEeccCcceEEEec
Confidence 999974 56899999999999985
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-35 Score=283.59 Aligned_cols=271 Identities=15% Similarity=0.188 Sum_probs=201.8
Q ss_pred eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccC
Q 009203 150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKR 224 (540)
Q Consensus 150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~ 224 (540)
+...-...++|+.+.+...+.+.+-....-..+.-.+.++..-.+...+..+...++|-.+.+.|.. .++.||++
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 3334456777888888777666221111101222233233322333444444444555444444322 45789999
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV 304 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v 304 (540)
+|..+.|+|| .++|++++.|++||+|.+.+..+.-.+ .||..+|+++.|+|-|-++|++ +.|++-++
T Consensus 453 PVyg~sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y--------~GH~~PVwdV~F~P~GyYFata----s~D~tArL 519 (707)
T KOG0263|consen 453 PVYGCSFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIY--------KGHLAPVWDVQFAPRGYYFATA----SHDQTARL 519 (707)
T ss_pred ceeeeeeccc-ccceeeccCCcceeeeecccceeEEEe--------cCCCcceeeEEecCCceEEEec----CCCceeee
Confidence 9999999996 899999999999999999997766555 6999999999999999999999 99999999
Q ss_pred EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203 305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 384 (540)
|..+.. ...+.+.+ |-+.|.|+.|+| +..++++|+.|.+|++||+.+|.. .+.+ .+|.++|.+++|+|
T Consensus 520 Ws~d~~---~PlRifag---hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~---VRiF--~GH~~~V~al~~Sp 587 (707)
T KOG0263|consen 520 WSTDHN---KPLRIFAG---HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS---VRIF--TGHKGPVTALAFSP 587 (707)
T ss_pred eecccC---Cchhhhcc---cccccceEEECC-cccccccCCCCceEEEEEcCCCcE---EEEe--cCCCCceEEEEEcC
Confidence 999875 44667765 677899999999 999999999999999999999985 3444 56999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 385 QKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 385 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
+|.+|++|+.||.|.+||+.++..+.. ..+.+.+.++.|+.++ ..|++|+.|++|++||+.
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg---~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDG---NVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCC---CEEEecCCCCeEEEEEch
Confidence 999999999999999999998876443 2234555566666555 456666666666666654
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.4e-36 Score=248.76 Aligned_cols=283 Identities=16% Similarity=0.169 Sum_probs=247.7
Q ss_pred ccccCceEEEEEec--CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 220 SLHKRKLRSLSLNP--VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 220 ~~h~~~V~~l~~sp--d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.||+.+|..++|+| ..|.+|++++.||.-.+-+-+++..+.++ .||.+.|++...+.+...-+++ +
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf--------eghkgavw~~~l~~na~~aasa----a 78 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF--------EGHKGAVWSATLNKNATRAASA----A 78 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee--------eccCcceeeeecCchhhhhhhh----c
Confidence 59999999999985 24899999999999999999999888888 6999999999999888888888 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.|-+-++||.-++. .+..+. |+-.|.+++|+. |.++|++|+.+..++|||++..+. +.....+|.+.|
T Consensus 79 adftakvw~a~tgd---elhsf~----hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~A----pp~E~~ghtg~I 146 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGD---ELHSFE----HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKA----PPKEISGHTGGI 146 (334)
T ss_pred ccchhhhhhhhhhh---hhhhhh----hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCC----CchhhcCCCCcc
Confidence 99999999999883 355554 577899999999 999999999999999999998773 444457799999
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
..+.|....+.|++.+.|++||+||.+++..+........+.++..++++ .+++-...+.|.+||..+.......
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG----~ilTia~gssV~Fwdaksf~~lKs~- 221 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG----RILTIAYGSSVKFWDAKSFGLLKSY- 221 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC----CEEEEecCceeEEeccccccceeec-
Confidence 99999998899999999999999999999999999999999999999988 4555666789999999987643321
Q ss_pred ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203 458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISSDLNIG 536 (540)
Q Consensus 458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~dg~v~ 536 (540)
.-...|.+.+++|+..++++|++|+.++.||+.+ +..+..+ ++|-++|.|+.|+|||...++||.||+|+
T Consensus 222 -------k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T--geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 222 -------KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT--GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred -------cCccccccccccCCCceEEecCcceEEEEEeccC--CceeeecccCCCCceEEEEECCCCceeeccCCCceEE
Confidence 1234688999999999999999999999999999 5656665 89999999999999999999999999999
Q ss_pred EEeC
Q 009203 537 LHKI 540 (540)
Q Consensus 537 iw~l 540 (540)
+|..
T Consensus 293 lWQt 296 (334)
T KOG0278|consen 293 LWQT 296 (334)
T ss_pred EEEe
Confidence 9963
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.5e-33 Score=300.12 Aligned_cols=297 Identities=13% Similarity=0.167 Sum_probs=226.7
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADS 297 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~ 297 (540)
+.+|.+.|++++|+|+ +.+||+|+.|+.|+||+............ .......+...|.+++|++. +.+|+++ +
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~las~----~ 552 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIH-YPVVELASRSKLSGICWNSYIKSQVASS----N 552 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccc-cceEEecccCceeeEEeccCCCCEEEEE----e
Confidence 4569999999999995 89999999999999999864211000000 00000123467899999874 7799999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.||+|++||+.++ ..+..+.+ |.+.|++++|+|.++.+|++|+.||+|++||++++.. ...+. +...|
T Consensus 553 ~Dg~v~lWd~~~~---~~~~~~~~---H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~---~~~~~---~~~~v 620 (793)
T PLN00181 553 FEGVVQVWDVARS---QLVTEMKE---HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS---IGTIK---TKANI 620 (793)
T ss_pred CCCeEEEEECCCC---eEEEEecC---CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE---EEEEe---cCCCe
Confidence 9999999999875 44555554 6788999999975789999999999999999998764 22222 33578
Q ss_pred eEEEec-cCCCEEEEEeCCCeEEEEECCCCCe-eee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 378 MGVAGM-QQKQIVLSAGADKRIIGFDAGVGRA-DFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 378 ~~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
.++.|+ ++|.+|++|+.||.|++||++++.. +.. ..+...+..+.|.+. .++++++.|++|++||+.......
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~----~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS----STLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCC----CEEEEEECCCEEEEEeCCCCcccc
Confidence 999995 5799999999999999999987653 322 344567788888643 489999999999999997532100
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-------------cccccccceeEEEEcC
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-------------SIRAHQKRVFKAVWHY 521 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-------------~~~~h~~~i~~l~~s~ 521 (540)
. ......+.+|...+.+++|+|++.+|++|+.||.|++|+.... .++. ....|...|.+++|+|
T Consensus 697 ~-~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 697 N-ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP--MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred C-CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC--CceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 0 0011245789999999999999999999999999999998652 2111 1223556799999999
Q ss_pred CCCEEEEEEcCCcEEEEeC
Q 009203 522 SHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 522 ~~~~l~s~~~dg~v~iw~l 540 (540)
++.+|++|+.||.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=233.17 Aligned_cols=283 Identities=16% Similarity=0.149 Sum_probs=238.1
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
+++..|+++|.++.|+-| |++.++++.|.+|++|+...+.++.++ .+|...|..++.+.|+..|++|
T Consensus 11 ~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktY--------sghG~EVlD~~~s~Dnskf~s~---- 77 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTY--------SGHGHEVLDAALSSDNSKFASC---- 77 (307)
T ss_pred eeecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeee--------cCCCceeeeccccccccccccC----
Confidence 456899999999999996 999999999999999999999888888 6899999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|..|.+||+++| +..+.+.+ |.+.|+.++|+. +...+++|+.|.++++||-+.... ..++.+ ....+.
T Consensus 78 GgDk~v~vwDV~TG---kv~Rr~rg---H~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~-ePiQil--dea~D~ 147 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTG---KVDRRFRG---HLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSF-EPIQIL--DEAKDG 147 (307)
T ss_pred CCCceEEEEEcccC---eeeeeccc---ccceeeEEEecC-cceEEEeccccceeEEEEcccCCC-Cccchh--hhhcCc
Confidence 99999999999998 55777776 778999999999 999999999999999999987653 112222 336678
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
|.++..+ +..|++|+.||+++.||++.|.. .....+.++.++.|++++ ...++++.|+++++.|-.+++....
T Consensus 148 V~Si~v~--~heIvaGS~DGtvRtydiR~G~l-~sDy~g~pit~vs~s~d~---nc~La~~l~stlrLlDk~tGklL~s- 220 (307)
T KOG0316|consen 148 VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL-SSDYFGHPITSVSFSKDG---NCSLASSLDSTLRLLDKETGKLLKS- 220 (307)
T ss_pred eeEEEec--ccEEEeeccCCcEEEEEeeccee-ehhhcCCcceeEEecCCC---CEEEEeeccceeeecccchhHHHHH-
Confidence 9999986 57899999999999999998875 344566788999999988 6899999999999999999886543
Q ss_pred eccccccCccccC--eEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccc-eeEEEEcCCCCEEEEEEcCC
Q 009203 457 FGWKQESSESQSA--LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKR-VFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 457 ~~~~~~~~~~~~~--v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~-i~~l~~s~~~~~l~s~~~dg 533 (540)
.++|.+. -...+++.....+++|++||.|++||+.. ...+..+..|... |.++.++|....|+++.. +
T Consensus 221 ------YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd--~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~ 291 (307)
T KOG0316|consen 221 ------YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD--ETQISKLSVVSTVIVTDLSCHPTMDDFITATG-H 291 (307)
T ss_pred ------hcccccceeeeeeeecccceeEEeccCCceEEEEEecc--ceeeeeeccCCceeEEeeecccCccceeEecC-C
Confidence 3455543 34456777788999999999999999997 6778888877776 899999999887777753 4
Q ss_pred cEEEE
Q 009203 534 NIGLH 538 (540)
Q Consensus 534 ~v~iw 538 (540)
.+..|
T Consensus 292 ~~~~~ 296 (307)
T KOG0316|consen 292 GDLFW 296 (307)
T ss_pred ceece
Confidence 44555
No 39
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=4.9e-35 Score=260.26 Aligned_cols=288 Identities=18% Similarity=0.249 Sum_probs=238.6
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+..|.+.|..+.|-+ +...|++|+.|..|++|++...+ ..+.... .|-.+.|+++.|.+++.+++++ +
T Consensus 170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tL----aGs~g~it~~d~d~~~~~~iAa----s 238 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK--SELISTL----AGSLGNITSIDFDSDNKHVIAA----S 238 (459)
T ss_pred hhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch--hhhhhhh----hccCCCcceeeecCCCceEEee----c
Confidence 4678999999999999 47899999999999999998766 2222222 4666889999999999999998 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.|+.+++|+++.. ....++.+ |.+.|+++.|.. ....+++|+.|.+|++||+....|...+. ..+.+
T Consensus 239 ~d~~~r~Wnvd~~---r~~~TLsG---HtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l------~~S~c 305 (459)
T KOG0288|consen 239 NDKNLRLWNVDSL---RLRHTLSG---HTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL------PGSQC 305 (459)
T ss_pred CCCceeeeeccch---hhhhhhcc---cccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc------ccccc
Confidence 9999999999975 44666665 789999999987 55569999999999999999987633222 34567
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
.+|+.+ +..+++|..|+.|++||.+...+......++.+.++..++++ ..+.+++.|.++.+.|+++.+... .+
T Consensus 306 nDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g---~~lLsssRDdtl~viDlRt~eI~~-~~ 379 (459)
T KOG0288|consen 306 NDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG---LELLSSSRDDTLKVIDLRTKEIRQ-TF 379 (459)
T ss_pred cceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC---eEEeeecCCCceeeeecccccEEE-Ee
Confidence 777776 577899999999999999999999999999999999999988 678888999999999999877433 22
Q ss_pred ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc--ceeEEEEcCCCCEEEEEEcCCcE
Q 009203 458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK--RVFKAVWHYSHPLLISISSDLNI 535 (540)
Q Consensus 458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~--~i~~l~~s~~~~~l~s~~~dg~v 535 (540)
.......+| ..+.+.|||++.|+++|+.||.|+||++.+ +++...+..... .|++++|+|.|..|++++.++.+
T Consensus 380 sA~g~k~as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~t--gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 380 SAEGFKCAS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFT--GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred ecccccccc--ccceeEECCCCceeeeccCCCcEEEEEccC--ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 222233344 388999999999999999999999999998 666666654333 69999999999999999999999
Q ss_pred EEEe
Q 009203 536 GLHK 539 (540)
Q Consensus 536 ~iw~ 539 (540)
.+|.
T Consensus 456 ~lW~ 459 (459)
T KOG0288|consen 456 TLWT 459 (459)
T ss_pred EecC
Confidence 9994
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=250.16 Aligned_cols=295 Identities=19% Similarity=0.209 Sum_probs=249.9
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
.|...-+.|..|+|| |++|++|+.||.|.+||..+++....+.........-+.++|.|+.|+.|...|++| +.|
T Consensus 210 Fg~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG----sqD 284 (508)
T KOG0275|consen 210 FGQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG----SQD 284 (508)
T ss_pred cccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc----CcC
Confidence 466778999999996 999999999999999999999876655443333334688999999999999999999 999
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
|.|++|.+.+| .|++.++. .|...|+|+.|+. |+..+++++.|.+++|..+.+|++ .+.+ .+|++.|+.
T Consensus 285 GkIKvWri~tG---~ClRrFdr--AHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~---LKEf--rGHsSyvn~ 353 (508)
T KOG0275|consen 285 GKIKVWRIETG---QCLRRFDR--AHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC---LKEF--RGHSSYVNE 353 (508)
T ss_pred CcEEEEEEecc---hHHHHhhh--hhccCeeEEEEcc-CcchhhcccccceEEEeccccchh---HHHh--cCccccccc
Confidence 99999999998 66776663 4667799999999 999999999999999999999987 3433 579999999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
..|.++|..+++++.||+|++|+..+++++..+.. +..+.++..-|.++. .++++...++|++.++... ....
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe--h~iVCNrsntv~imn~qGQ--vVrs 429 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE--HFIVCNRSNTVYIMNMQGQ--VVRS 429 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc--eEEEEcCCCeEEEEeccce--EEee
Confidence 99999999999999999999999999999776543 456777887777754 6778888899999998732 3333
Q ss_pred eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203 457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG 536 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~ 536 (540)
+. ..+...+...+.+.||.|.++.+.++|+.++.|.+.+ ++...++..|...|-.++.+|..+.|++-+.||.++
T Consensus 430 fs---SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s--G~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllK 504 (508)
T KOG0275|consen 430 FS---SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS--GKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLK 504 (508)
T ss_pred ec---cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec--CceeeeeecccccccccccCcccchhhhhcccchhh
Confidence 22 1223345677888999999999999999999999998 788889999999999999999999999999999999
Q ss_pred EEe
Q 009203 537 LHK 539 (540)
Q Consensus 537 iw~ 539 (540)
+|.
T Consensus 505 LWk 507 (508)
T KOG0275|consen 505 LWK 507 (508)
T ss_pred hcC
Confidence 996
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-33 Score=262.50 Aligned_cols=287 Identities=17% Similarity=0.197 Sum_probs=247.9
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
..+..|+..|.++.|+|. ..+++++-.+|.|.|||.++...+..+. -...+|.++.|-+-.+++++|
T Consensus 7 rk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfe--------V~~~PvRa~kfiaRknWiv~G---- 73 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFE--------VSEVPVRAAKFIARKNWIVTG---- 73 (794)
T ss_pred hHhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeee--------ecccchhhheeeeccceEEEe----
Confidence 345668999999999995 8999999999999999999987776663 334678999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|..|+||+.+++ ..+..+.. |.+.|.+++.+| ...++++++.|-+|++||.+..=. ......+|...
T Consensus 74 sDD~~IrVfnynt~---ekV~~FeA---H~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa----~~qtfeGH~Hy 142 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTG---EKVKTFEA---HSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWA----CEQTFEGHEHY 142 (794)
T ss_pred cCCceEEEEecccc---eeeEEeec---cccceeeeeecC-CCCeEEecCCccEEEEeeccCcee----eeeEEcCcceE
Confidence 99999999999997 56888876 788999999999 888999999999999999987642 33344789999
Q ss_pred eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
|++++|+| |.+.+++++.|++|++|.+....+.++.. +...+.++.+-+.+.. .+|++|+.|.+|+|||..+..+..
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdk-pylIsgaDD~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDK-PYLISGADDLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCc-ceEEecCCCceEEEeecchHHHHH
Confidence 99999999 66899999999999999999888766644 4466777777665544 599999999999999999988744
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCc
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLN 534 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~ 534 (540)
++.||...|..+.|+|.-.++++|++||+++||+..+ .+...++.....+|++++-.+.+..++.|.++|.
T Consensus 222 -------TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T--y~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 222 -------TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT--YKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred -------HhhcccccceEEEecCCCcEEEEecCCccEEEecCcc--eehhhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence 7789999999999999999999999999999999988 6777777777889999999999888999988887
Q ss_pred EEE
Q 009203 535 IGL 537 (540)
Q Consensus 535 v~i 537 (540)
|.|
T Consensus 293 i~v 295 (794)
T KOG0276|consen 293 VTV 295 (794)
T ss_pred EEE
Confidence 754
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=239.61 Aligned_cols=280 Identities=16% Similarity=0.186 Sum_probs=238.2
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc------hhccc
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN------HVSSL 221 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~------~~~~~ 221 (540)
+..+++|.+.|+.+.|.|..+ ++++++.|+.|.+|+.. .+++|
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs-------------------------------~~aSgG~Dr~I~LWnv~gdceN~~~lkg 88 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGS-------------------------------CFASGGSDRAIVLWNVYGDCENFWVLKG 88 (338)
T ss_pred hhhcCCCcceEEEEEECCCCC-------------------------------eEeecCCcceEEEEeccccccceeeecc
Confidence 456689999999999999864 79999999999999632 56899
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCe-EEEEeecCCCCC
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNS-LFSAHTADSGDS 300 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~~~~~d~ 300 (540)
|++.|..+.|.+| +..|++++.|.+|+.||+++++..+.. .+|..-|+++.-+.-|.. +.++ +.|+
T Consensus 89 HsgAVM~l~~~~d-~s~i~S~gtDk~v~~wD~~tG~~~rk~--------k~h~~~vNs~~p~rrg~~lv~Sg----sdD~ 155 (338)
T KOG0265|consen 89 HSGAVMELHGMRD-GSHILSCGTDKTVRGWDAETGKRIRKH--------KGHTSFVNSLDPSRRGPQLVCSG----SDDG 155 (338)
T ss_pred ccceeEeeeeccC-CCEEEEecCCceEEEEecccceeeehh--------ccccceeeecCccccCCeEEEec----CCCc
Confidence 9999999999996 999999999999999999999988877 688888998885555554 4555 9999
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
++++||+++. .+++++.. +..++++.|.. .+..+.+|+-|+.|++||++.... .....+|.+.|+.+
T Consensus 156 t~kl~D~R~k---~~~~t~~~----kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~-----~~~lsGh~DtIt~l 222 (338)
T KOG0265|consen 156 TLKLWDIRKK---EAIKTFEN----KYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDG-----LYTLSGHADTITGL 222 (338)
T ss_pred eEEEEeeccc---chhhcccc----ceeEEEEEecc-cccceeeccccCceeeeccccCcc-----eEEeecccCceeeE
Confidence 9999999974 55666654 45699999998 899999999999999999998875 23336799999999
Q ss_pred EeccCCCEEEEEeCCCeEEEEECCCCC----eeee-----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 381 AGMQQKQIVLSAGADKRIIGFDAGVGR----ADFK-----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
..+++|.++.+-+.|.++++||++--. ++.. +..+...+...|+|++ ..+.+|+.|..+++||.....
T Consensus 223 sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~---~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 223 SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG---TKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC---CccccccccceEEEeeccccc
Confidence 999999999999999999999998522 2332 3445677888999987 789999999999999998766
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLF 494 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iw 494 (540)
... .+++|.+.|.+++|+|...+|.+++.|.+|++=
T Consensus 300 ~ly-------klpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 300 ILY-------KLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EEE-------EcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 433 568999999999999999999999999999863
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=273.31 Aligned_cols=304 Identities=17% Similarity=0.246 Sum_probs=237.2
Q ss_pred cceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccCceEEE
Q 009203 155 AHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKRKLRSL 229 (540)
Q Consensus 155 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l 229 (540)
+..|..++|+|++| -+-++-..+.|++||.. +-+.+|.++|..+
T Consensus 9 SsRvKglsFHP~rP-------------------------------wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv 57 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRP-------------------------------WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGV 57 (1202)
T ss_pred cccccceecCCCCC-------------------------------EEEEeecCceeeeehhhhhhHHhhhhccCCcccee
Confidence 34677889999988 24445557899999887 3378999999999
Q ss_pred EEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203 230 SLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK 309 (540)
Q Consensus 230 ~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~ 309 (540)
+|+|+ +.++++|+.|..|+||+....+++.++ .||.+.|..+.|++.-.+|+++ +.|.+|+||++.+
T Consensus 58 ~FH~~-qplFVSGGDDykIkVWnYk~rrclftL--------~GHlDYVRt~~FHheyPWIlSA----SDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 58 DFHPT-QPLFVSGGDDYKIKVWNYKTRRCLFTL--------LGHLDYVRTVFFHHEYPWILSA----SDDQTIRIWNWQS 124 (1202)
T ss_pred eecCC-CCeEEecCCccEEEEEecccceehhhh--------ccccceeEEeeccCCCceEEEc----cCCCeEEEEeccC
Confidence 99995 999999999999999999999998888 6999999999999999999999 9999999999998
Q ss_pred CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE
Q 009203 310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV 389 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 389 (540)
. .++..+.+ |.-.|.|..|+| ..++++++|-|.+|++||+..-.. . +..+. ++.=...+..+
T Consensus 125 r---~~iavltG---HnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRk----k------~~~pg-~~e~~~~~~~~ 186 (1202)
T KOG0292|consen 125 R---KCIAVLTG---HNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRK----K------NKAPG-SLEDQMRGQQG 186 (1202)
T ss_pred C---ceEEEEec---CceEEEeeccCC-ccceEEEecccceEEEEeecchhc----c------CCCCC-Cchhhhhcccc
Confidence 5 78999987 555799999999 999999999999999999986442 1 11111 11100111111
Q ss_pred ---EEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203 390 ---LSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES 466 (540)
Q Consensus 390 ---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 466 (540)
+.|+.|-.|+.. ...++..+..++|+|.- -++++|+.|..|++|.+...+. .. ..+..+|
T Consensus 187 ~~dLfg~~DaVVK~V---------LEGHDRGVNwaAfhpTl---pliVSG~DDRqVKlWrmnetKa--WE---vDtcrgH 249 (1202)
T KOG0292|consen 187 NSDLFGQTDAVVKHV---------LEGHDRGVNWAAFHPTL---PLIVSGADDRQVKLWRMNETKA--WE---VDTCRGH 249 (1202)
T ss_pred chhhcCCcCeeeeee---------ecccccccceEEecCCc---ceEEecCCcceeeEEEeccccc--ee---ehhhhcc
Confidence 223334333211 12233456677788765 4888899999999998874332 11 2256799
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 467 QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 467 ~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+.|.++-|+|....+++.++|++|+|||++. .+.+.+++...+.-+.++-+|..+++++| .|+-+.||.|
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~k--Rt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkl 320 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK--RTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKL 320 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEeccc--ccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEE
Confidence 99999999999999999999999999999998 78899998778899999999999977766 5555666653
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.3e-35 Score=253.12 Aligned_cols=261 Identities=16% Similarity=0.245 Sum_probs=220.6
Q ss_pred EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR 275 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~ 275 (540)
+.++..|.+|++||.. .++.||++.|.|+.|. .+.|++|+.|.+|+|||+++++.+.++ -+|.+
T Consensus 210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tl--------ihHce 278 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTL--------IHHCE 278 (499)
T ss_pred hhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHH--------hhhcc
Confidence 4578889999999876 6789999999999996 459999999999999999999998888 58889
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.|..+.|+. .+++++ +.|.++.+||+.+.....+...+.+ |...|+.+.|+ .+++++++.|.+|++|+
T Consensus 279 aVLhlrf~n--g~mvtc----SkDrsiaVWdm~sps~it~rrVLvG---HrAaVNvVdfd---~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 279 AVLHLRFSN--GYMVTC----SKDRSIAVWDMASPTDITLRRVLVG---HRAAVNVVDFD---DKYIVSASGDRTIKVWS 346 (499)
T ss_pred eeEEEEEeC--CEEEEe----cCCceeEEEeccCchHHHHHHHHhh---hhhheeeeccc---cceEEEecCCceEEEEe
Confidence 999999974 589999 9999999999998765555566665 77889999995 47999999999999999
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEE
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 434 (540)
+.++++ ..++ .+|...|.|+.+ .|+++++|+.|.+|++||+..|.++...+. +.-+.++.|+. ..++
T Consensus 347 ~st~ef---vRtl--~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-----krIV 414 (499)
T KOG0281|consen 347 TSTCEF---VRTL--NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-----KRIV 414 (499)
T ss_pred ccceee---ehhh--hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC-----ceee
Confidence 999986 4444 569999999998 489999999999999999999999877544 45667888876 5799
Q ss_pred EEcCCCeEEEEECCCCcceeeeec--cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFG--WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
+|..||+|++||+.....+...-+ ....+..|.+.|..+.| |...+++++.|.+|.|||+.+
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 999999999999987654322111 12345678999999999 667899999999999999987
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.4e-33 Score=243.64 Aligned_cols=291 Identities=15% Similarity=0.152 Sum_probs=232.2
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
+.|..|+++|.+++.+| +.+++|||+.|....||++.++.....+ .+|++.|+++.|+.+|.+||+|
T Consensus 58 ~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~el--------tgHKDSVt~~~FshdgtlLATG---- 124 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGEL--------TGHKDSVTCCSFSHDGTLLATG---- 124 (399)
T ss_pred eehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEe--------cCCCCceEEEEEccCceEEEec----
Confidence 34689999999999999 6999999999999999999999866666 7999999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
..+|.|+||+..++.. ...... .-+.+.-+.|+| .+..|+.|+.||.+.+|.+..+.. .+.+ .+|..+
T Consensus 125 dmsG~v~v~~~stg~~--~~~~~~----e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~---~kv~--~Gh~~~ 192 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGE--QWKLDQ----EVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQAL---CKVM--SGHNSP 192 (399)
T ss_pred CCCccEEEEEcccCce--EEEeec----ccCceEEEEecc-cccEEEeecCCCcEEEEECCCcce---eeEe--cCCCCC
Confidence 9999999999998743 222221 134588899999 999999999999999999998532 3444 569999
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
+++=.|.|+|+.++++..||+|++||+.++.++..... +....++.++..+ ..++.|+.++.+++-+..+++...
T Consensus 193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~---~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG---STLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc---ceeEeccCCccEEEEccccceEEE
Confidence 99999999999999999999999999999998776442 2222333333333 578889999999988888776544
Q ss_pred eeec-cccccCccccCeEEE---EEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 455 HAFG-WKQESSESQSALINQ---SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 455 ~~~~-~~~~~~~~~~~v~~~---~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
...+ .......+...+.++ .|+..-.+.|+|+-||+|.|||+.. ..++..-.|..+|+.+.|-+ ..+|++++
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~---~~~R~~c~he~~V~~l~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA---STLRHICEHEDGVTKLKWLN-TDYLLTAC 345 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc---chhheeccCCCceEEEEEcC-cchheeec
Confidence 3321 111222344444454 4555667889999999999999996 33445556888999999988 78999999
Q ss_pred cCCcEEEEe
Q 009203 531 SDLNIGLHK 539 (540)
Q Consensus 531 ~dg~v~iw~ 539 (540)
.||.|+.||
T Consensus 346 ~~g~v~~wD 354 (399)
T KOG0296|consen 346 ANGKVRQWD 354 (399)
T ss_pred cCceEEeee
Confidence 999999998
No 46
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=252.63 Aligned_cols=280 Identities=20% Similarity=0.300 Sum_probs=231.3
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
|.||.++|.|++=+|..-..+|+|+.||.|+|||+....+..++ ..|.+.|..+++.. ..++++ +.
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f--------~AH~G~V~Gi~v~~--~~~~tv----gd 127 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF--------KAHEGLVRGICVTQ--TSFFTV----GD 127 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee--------ecccCceeeEEecc--cceEEe----cC
Confidence 57999999999999953378999999999999999998888888 58899999999987 567777 89
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
|.+|+.|.++.. ...++.+ .+.+..+.-+. .++.++|+|. .|.|||.....+ ...+.. ..+.|.
T Consensus 128 DKtvK~wk~~~~----p~~tilg----~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~P---v~smsw--G~Dti~ 191 (433)
T KOG0268|consen 128 DKTVKQWKIDGP----PLHTILG----KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNP---VSSMSW--GADSIS 191 (433)
T ss_pred CcceeeeeccCC----cceeeec----ccccccccccc-ccccccccCc--eeeecccccCCc---cceeec--CCCcee
Confidence 999999998842 3444443 45577787776 7788999886 499999987664 333332 557799
Q ss_pred EEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 379 GVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 379 ~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
++.|+|.. ..|++|+.|+.|.+||++.+.++...........++|+|.. ..+++|+.|..++.||++....+..
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea---fnF~~a~ED~nlY~~DmR~l~~p~~-- 266 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA---FNFVAANEDHNLYTYDMRNLSRPLN-- 266 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccc---cceeeccccccceehhhhhhcccch--
Confidence 99999965 56677779999999999999999888888888999999955 5789999999999999998776554
Q ss_pred ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc-ccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203 458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK-PSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG 536 (540)
Q Consensus 458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~ 536 (540)
...+|.+.|.+++|||.|+-+++|+.|.+|+||.++.+..+ ...+- -...|.++.||.|.+++++||+|+.|+
T Consensus 267 ----v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 267 ----VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ----hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCccee
Confidence 45789999999999999999999999999999999863111 11111 123599999999999999999999999
Q ss_pred EEe
Q 009203 537 LHK 539 (540)
Q Consensus 537 iw~ 539 (540)
+|+
T Consensus 341 lWk 343 (433)
T KOG0268|consen 341 LWK 343 (433)
T ss_pred eee
Confidence 996
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=253.97 Aligned_cols=358 Identities=16% Similarity=0.237 Sum_probs=291.2
Q ss_pred eeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccc---------eEEecCCCCeEEEeccc
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIP---------LVRTSASPATIHCHTSN 216 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~d~~i~~~~~~ 216 (540)
.-...||..+|+++.+.......+ +-|..++-.-..+-...|.+.+|...|. .+.+.+.|..|++|+..
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 344568999999999998876666 5555555334456666778888877663 35677889999999886
Q ss_pred -----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC------------------------Ccc-------
Q 009203 217 -----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG------------------------SGA------- 260 (540)
Q Consensus 217 -----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~------------------------~~~------- 260 (540)
.+.-+|.+.|+++++.+ ..+++++.|+.+++|++.... .+.
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~ 256 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSD 256 (888)
T ss_pred cceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcc
Confidence 33568899999999986 478999999999999982100 000
Q ss_pred e-------------------------------------------------------------------------------
Q 009203 261 S------------------------------------------------------------------------------- 261 (540)
Q Consensus 261 ~------------------------------------------------------------------------------- 261 (540)
.
T Consensus 257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~ 336 (888)
T KOG0306|consen 257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTEN 336 (888)
T ss_pred cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcce
Confidence 0
Q ss_pred -e-------------ecccc----------cCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203 262 -L-------------LSTTD----------CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT 317 (540)
Q Consensus 262 -~-------------~~~~~----------~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~ 317 (540)
+ ..+.. ....||...|.+++++.+...++++ ..+.|.+|+..+. +|++
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-----a~~SikiWn~~t~---kciR 408 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-----AGESIKIWNRDTL---KCIR 408 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-----CCCcEEEEEccCc---ceeE
Confidence 0 00000 0114788999999999998888884 7889999999986 7788
Q ss_pred eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCe
Q 009203 318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKR 397 (540)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~ 397 (540)
++.. +.+.+..|.| .+.++++|...|.+.+||+..... ...+ ..|.+.|.+++.+||+..+++|+.|.+
T Consensus 409 Ti~~-----~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l---~Eti--~AHdgaIWsi~~~pD~~g~vT~saDkt 477 (888)
T KOG0306|consen 409 TITC-----GYILASKFVP-GDRYIVLGTKNGELQVFDLASASL---VETI--RAHDGAIWSISLSPDNKGFVTGSADKT 477 (888)
T ss_pred Eecc-----ccEEEEEecC-CCceEEEeccCCceEEEEeehhhh---hhhh--hccccceeeeeecCCCCceEEecCCcE
Confidence 8874 5799999999 889999999999999999998875 2333 469999999999999999999999999
Q ss_pred EEEEECCC-----CCe--------eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccC
Q 009203 398 IIGFDAGV-----GRA--------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESS 464 (540)
Q Consensus 398 i~iwd~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 464 (540)
|++||..- |.. .........+.++.++|++ .+|+++--|++|++|-+++.+..+ .+.
T Consensus 478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg---k~LaVsLLdnTVkVyflDtlKFfl-------sLY 547 (888)
T KOG0306|consen 478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG---KLLAVSLLDNTVKVYFLDTLKFFL-------SLY 547 (888)
T ss_pred EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC---cEEEEEeccCeEEEEEecceeeee-------eec
Confidence 99999742 111 1235567889999999998 899999999999999999776444 567
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
||.-+|.|+..|||++.++||+.|..|+||-++- +.+-..+-+|.+.|.++.|-|....++++|.|+.|+-||
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdF--GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF--GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEecccc--chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 8999999999999999999999999999999998 789999999999999999999999999999999999997
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=239.60 Aligned_cols=268 Identities=18% Similarity=0.244 Sum_probs=225.6
Q ss_pred EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR 275 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~ 275 (540)
.++++.|++++|||.. .++.||...|..|++|+ ...||++++.|+.|+.||++..+.++.+ .||..
T Consensus 166 f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~nkvIR~Y--------hGHlS 236 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYNKVIRHY--------HGHLS 236 (460)
T ss_pred EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhhhhHHHh--------ccccc
Confidence 4578899999999875 45889999999999999 4889999999999999999998887777 69999
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.|.|++.+|.-+.|++| +.|.+++|||+++. ..+..+.+ |..+|..+.+.| ....+++|+.|++|++||
T Consensus 237 ~V~~L~lhPTldvl~t~----grDst~RvWDiRtr---~~V~~l~G---H~~~V~~V~~~~-~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTG----GRDSTIRVWDIRTR---ASVHVLSG---HTNPVASVMCQP-TDPQVITGSHDSTVRLWD 305 (460)
T ss_pred eeEEEeccccceeEEec----CCcceEEEeeeccc---ceEEEecC---CCCcceeEEeec-CCCceEEecCCceEEEee
Confidence 99999999999999999 99999999999985 55777776 788999999999 666799999999999999
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEE
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 434 (540)
++.++. ......|...|.+++.+|....+++++.| .|+-|++-.|..+.... ....+.++..+.++ +++
T Consensus 306 l~agkt-----~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~----v~~ 375 (460)
T KOG0285|consen 306 LRAGKT-----MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG----VLV 375 (460)
T ss_pred eccCce-----eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc----eEE
Confidence 999874 33334599999999999999999999987 69999999888766533 34566778888876 899
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccc-cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQE-SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
+|+.+|.+.+||.+++-.........+. .-.....|.+.+|+..|..|++|..|.+|.+|.-+.
T Consensus 376 ~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 9999999999999987643322111110 112355799999999999999999999999998764
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-32 Score=228.52 Aligned_cols=288 Identities=14% Similarity=0.122 Sum_probs=233.9
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.||+.+++-+.|+.+ |.+|++++.|.++.||-..+++.+.++ .||.+.|+|++...+.+.+++| +
T Consensus 5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty--------~GHtGavW~~Did~~s~~liTG----S 71 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTY--------DGHTGAVWCCDIDWDSKHLITG----S 71 (327)
T ss_pred ccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeee--------cCCCceEEEEEecCCcceeeec----c
Confidence 46899999999999995 999999999999999999888888877 6999999999999999999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-----CCcEEEEecCCCCC--ccccceeec
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-----DHAVVLWSERDAED--SWKPKALHR 370 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-----dg~i~iwd~~~~~~--~~~~~~~~~ 370 (540)
.|.++++||+.+| +++..+.. ..+|..+.|++ ++++++.... .+.|.++|++.... ...-..+..
T Consensus 72 AD~t~kLWDv~tG---k~la~~k~----~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 72 ADQTAKLWDVETG---KQLATWKT----NSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred ccceeEEEEcCCC---cEEEEeec----CCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 9999999999998 44555553 56799999999 8888877654 36799999984331 011112233
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
..+.+.++.+-|.|-+++|++|..||.|.+||+++|..+.. ..+...+..+.++++. .++++++.|.+-++||+.
T Consensus 144 ~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~---T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 144 PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR---TYFITGSKDTTAKLVDVR 220 (327)
T ss_pred cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc---ceEEecccCccceeeecc
Confidence 44778999999999999999999999999999999876544 3445688899999988 799999999999999999
Q ss_pred CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcE--------------EEEeccCCCCcccccccccccce
Q 009203 449 LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVI--------------HLFDIRYSANKPSQSIRAHQKRV 514 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i--------------~iwd~~~~~~~~~~~~~~h~~~i 514 (540)
+.+...... ...+|++.+++|....++.|+..... ++|++-. .+.+..+++|-++|
T Consensus 221 tl~v~Kty~--------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~--eEEigrvkGHFGPI 290 (327)
T KOG0643|consen 221 TLEVLKTYT--------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF--EEEIGRVKGHFGPI 290 (327)
T ss_pred ceeeEEEee--------ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH--HHHhccccccccCc
Confidence 877544332 35689999999988887777543222 1222221 23456778999999
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 515 FKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
++++|+|+|+..+||++||.|++.-
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEE
Confidence 9999999999999999999999864
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-32 Score=251.62 Aligned_cols=277 Identities=14% Similarity=0.170 Sum_probs=233.0
Q ss_pred cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccCce
Q 009203 152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKRKL 226 (540)
Q Consensus 152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V 226 (540)
..++..|.++.++|+.|. +-.+--.+.+.+|+.+ ..+.-..-+|
T Consensus 10 ~~rSdRVKsVd~HPtePw-------------------------------~la~LynG~V~IWnyetqtmVksfeV~~~Pv 58 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPW-------------------------------ILAALYNGDVQIWNYETQTMVKSFEVSEVPV 58 (794)
T ss_pred hccCCceeeeecCCCCce-------------------------------EEEeeecCeeEEEecccceeeeeeeecccch
Confidence 457889999999999872 2222336788899765 2255667899
Q ss_pred EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN 306 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd 306 (540)
.+..|-+ ..+++++|+.|..|+||+..+.+.+..+ ..|.+.|.+++.+|...+++++ +.|-+|++||
T Consensus 59 Ra~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~F--------eAH~DyIR~iavHPt~P~vLts----SDDm~iKlW~ 125 (794)
T KOG0276|consen 59 RAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTF--------EAHSDYIRSIAVHPTLPYVLTS----SDDMTIKLWD 125 (794)
T ss_pred hhheeee-ccceEEEecCCceEEEEecccceeeEEe--------eccccceeeeeecCCCCeEEec----CCccEEEEee
Confidence 9999999 4899999999999999999999988888 6899999999999999999999 9999999999
Q ss_pred cCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC
Q 009203 307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK 386 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 386 (540)
.+.. -.+.+++++ |...|.+++|+|.|.+.+++++-|++|++|.+....+ .+...+|...|+|++|-+.|
T Consensus 126 we~~--wa~~qtfeG---H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-----nfTl~gHekGVN~Vdyy~~g 195 (794)
T KOG0276|consen 126 WENE--WACEQTFEG---HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-----NFTLEGHEKGVNCVDYYTGG 195 (794)
T ss_pred ccCc--eeeeeEEcC---cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC-----ceeeeccccCcceEEeccCC
Confidence 9976 678888887 5668999999999999999999999999999998764 44456899999999997744
Q ss_pred --CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc
Q 009203 387 --QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES 463 (540)
Q Consensus 387 --~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 463 (540)
.+|++|+.|.++++||..+..++.+.. +...+..+.|+|.- .++++|+.||+|+||+..+-+... ++
T Consensus 196 dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l---piiisgsEDGTvriWhs~Ty~lE~-------tL 265 (794)
T KOG0276|consen 196 DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL---PIIISGSEDGTVRIWNSKTYKLEK-------TL 265 (794)
T ss_pred CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC---cEEEEecCCccEEEecCcceehhh-------hh
Confidence 699999999999999999999988865 45677788899876 589999999999999998765432 22
Q ss_pred CccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 009203 464 SESQSALINQSWSPDGLYITSGSADPVIH 492 (540)
Q Consensus 464 ~~~~~~v~~~~~sp~g~~l~sg~~dg~i~ 492 (540)
.-.-..|+|++-.+.++.++.|...|.|.
T Consensus 266 n~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 266 NYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred hcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 33456799999888888888887777653
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=265.49 Aligned_cols=264 Identities=19% Similarity=0.271 Sum_probs=218.2
Q ss_pred EEecCCCCeEEEecc-------chhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcC-CCCCcceeecccccCCCC
Q 009203 201 VRTSASPATIHCHTS-------NHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ-SRGSGASLLSTTDCLSPK 272 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~-------~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~ 272 (540)
++.++.++.+++|.. .+.+.+|...|++++|+|| +.++++|+.|++++|||+. .+..+.++ .+
T Consensus 174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~~~l--------~g 244 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNLKTL--------KG 244 (456)
T ss_pred EEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEEEEe--------cC
Confidence 667778999999966 2456899999999999996 8999999999999999994 43555666 69
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
|...|++++|+|+|+++++| +.|++|+|||+.++ .+...+.+ |.+.|.+++|++ ++.+|++++.|+.|+
T Consensus 245 H~~~v~~~~f~p~g~~i~Sg----s~D~tvriWd~~~~---~~~~~l~~---hs~~is~~~f~~-d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSG----SDDGTVRIWDVRTG---ECVRKLKG---HSDGISGLAFSP-DGNLLVSASYDGTIR 313 (456)
T ss_pred CCCceEEEEecCCCCEEEEe----cCCCcEEEEeccCC---eEEEeeec---cCCceEEEEECC-CCCEEEEcCCCccEE
Confidence 99999999999999999999 99999999999985 67777776 778899999999 999999999999999
Q ss_pred EEecCCCCCccccceeecccCCc--ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc----EEEEeecCC
Q 009203 353 LWSERDAEDSWKPKALHRNLHSS--AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK----CMSVLPNPC 426 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~ 426 (540)
|||+.++... ....+. .+.. .+++++|+|++.++++++.|+.+++||+..+........... ..+....+.
T Consensus 314 vwd~~~~~~~-~~~~~~--~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 314 VWDLETGSKL-CLKLLS--GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred EEECCCCcee-eeeccc--CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 9999998721 012222 2222 699999999999999999999999999998877655333221 123333444
Q ss_pred CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCCEEEEEe--CCCcEEEEecc
Q 009203 427 DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGLYITSGS--ADPVIHLFDIR 497 (540)
Q Consensus 427 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~ 497 (540)
+ .++++|+.|+.|++||+.++.... .+.+| ...+..+.++|..+++++++ .|+.+++|..+
T Consensus 391 ~---~~i~sg~~d~~v~~~~~~s~~~~~-------~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 G---KLIYSGSEDGSVYVWDSSSGGILQ-------RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred C---CeEEEEeCCceEEEEeCCccchhh-------hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 4 799999999999999999865433 55678 88899999999999999998 78999999765
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.5e-33 Score=252.74 Aligned_cols=289 Identities=16% Similarity=0.213 Sum_probs=239.2
Q ss_pred CCCCCCeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----
Q 009203 142 KDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----- 216 (540)
Q Consensus 142 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----- 216 (540)
..+...+...++|...|+++.+.|.. + ..+.+++.|+.|+||+..
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~-------------------------~-----hLlLS~gmD~~vklW~vy~~~~~ 250 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKK-------------------------G-----HLLLSGGMDGLVKLWNVYDDRRC 250 (503)
T ss_pred eccHhheeeccCCccccchhhhccce-------------------------e-----eEEEecCCCceEEEEEEecCcce
Confidence 44666777888999999998888861 1 368899999999999653
Q ss_pred -hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEee
Q 009203 217 -HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHT 294 (540)
Q Consensus 217 -~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~ 294 (540)
+++.||..+|.+++|+.+ |..+++++.|+.+++||+++|++...+.. ...++|+.|+|++ +.+++|
T Consensus 251 lrtf~gH~k~Vrd~~~s~~-g~~fLS~sfD~~lKlwDtETG~~~~~f~~---------~~~~~cvkf~pd~~n~fl~G-- 318 (503)
T KOG0282|consen 251 LRTFKGHRKPVRDASFNNC-GTSFLSASFDRFLKLWDTETGQVLSRFHL---------DKVPTCVKFHPDNQNIFLVG-- 318 (503)
T ss_pred ehhhhcchhhhhhhhcccc-CCeeeeeecceeeeeeccccceEEEEEec---------CCCceeeecCCCCCcEEEEe--
Confidence 679999999999999996 99999999999999999999998777632 2447899999999 678888
Q ss_pred cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
+.|+.|+.||++++ +.++... +|-+.|..+.|-+ ++..+++.+.|++++||+.+.+-.+. .....+.
T Consensus 319 --~sd~ki~~wDiRs~---kvvqeYd---~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik----~i~~~~~ 385 (503)
T KOG0282|consen 319 --GSDKKIRQWDIRSG---KVVQEYD---RHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIK----NIADPEM 385 (503)
T ss_pred --cCCCcEEEEeccch---HHHHHHH---hhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccch----hhcchhh
Confidence 99999999999987 3444444 4778899999999 99999999999999999999876421 1112234
Q ss_pred cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe------eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
-.+.++..+|++.+++.-+.|..|.+|.+...-. ...+...+..+.+.|+|++ .+|++|+.||.+.+||.+
T Consensus 386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG---~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG---RTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC---CeEEeecCCccEEEeech
Confidence 4577899999999999999999999998754222 2336667888899999998 799999999999999999
Q ss_pred CCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEe
Q 009203 449 LRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFD 495 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd 495 (540)
+..... .++.|...+..+.|+|.. ..+|+++.||.|++|+
T Consensus 463 t~kl~~-------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TTKLVS-------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhh-------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 776432 567899999999999964 6799999999999996
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.9e-30 Score=273.17 Aligned_cols=270 Identities=16% Similarity=0.212 Sum_probs=211.1
Q ss_pred eEEecCCCCeEEEeccch------------hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc
Q 009203 200 LVRTSASPATIHCHTSNH------------VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD 267 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~~------------~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~ 267 (540)
.+++++.|++|++|+... ....+...|.+++|+|..+.+|++|+.||+|+|||+.+++....+
T Consensus 497 ~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~----- 571 (793)
T PLN00181 497 FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM----- 571 (793)
T ss_pred EEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----
Confidence 477888999999997531 012345689999999866889999999999999999987655544
Q ss_pred cCCCCCCCCceeEEEec-CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203 268 CLSPKHRRWPEDIAWHP-QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG 346 (540)
Q Consensus 268 ~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 346 (540)
.+|...|++++|+| ++.+|+++ +.|+.|++||+.++ ..+..+.. ...|.++.|++.++.+|++|+
T Consensus 572 ---~~H~~~V~~l~~~p~~~~~L~Sg----s~Dg~v~iWd~~~~---~~~~~~~~----~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 572 ---KEHEKRVWSIDYSSADPTLLASG----SDDGSVKLWSINQG---VSIGTIKT----KANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred ---cCCCCCEEEEEEcCCCCCEEEEE----cCCCEEEEEECCCC---cEEEEEec----CCCeEEEEEeCCCCCEEEEEe
Confidence 58999999999997 78899999 99999999999876 34555543 246999999765899999999
Q ss_pred cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC------Ceeeeec-cCccEE
Q 009203 347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG------RADFKHQ-IESKCM 419 (540)
Q Consensus 347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~-~~~~~~ 419 (540)
.||.|++||++.... ......+|...|.++.|. ++.+|++++.|+.|++||++.+ ..+..+. +...+.
T Consensus 638 ~dg~I~iwD~~~~~~----~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 638 ADHKVYYYDLRNPKL----PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred CCCeEEEEECCCCCc----cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 999999999987642 122235699999999997 6889999999999999999753 2333332 345566
Q ss_pred EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee-eccc-----cccCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009203 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA-FGWK-----QESSESQSALINQSWSPDGLYITSGSADPVIHL 493 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~-----~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~i 493 (540)
.+.++|++ .+|++|+.|+.|++|+.......... +... .....+...|.+++|+|++.+|++|+.||.|+|
T Consensus 713 ~v~~s~~~---~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 713 FVGLSVSD---GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred EEEEcCCC---CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 78888876 69999999999999998755422111 1000 012345667999999999999999999999999
Q ss_pred Eec
Q 009203 494 FDI 496 (540)
Q Consensus 494 wd~ 496 (540)
|++
T Consensus 790 ~~~ 792 (793)
T PLN00181 790 LEM 792 (793)
T ss_pred Eec
Confidence 996
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-32 Score=227.16 Aligned_cols=285 Identities=18% Similarity=0.205 Sum_probs=229.1
Q ss_pred eEEEEEecCCCcEEEEE-------eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCC
Q 009203 226 LRSLSLNPVNEQLFVTS-------ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADS 297 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg-------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~ 297 (540)
=.++.|||--...||.+ ...|++.|-++...+.+..+.. + .-.+.+..++|++.. +.++++ +
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s-~-----d~~D~LfdV~Wse~~e~~~~~a----~ 80 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS-Y-----DTEDGLFDVAWSENHENQVIAA----S 80 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe-e-----ecccceeEeeecCCCcceEEEE----e
Confidence 36788998544455544 2468899999875554443322 1 234668899999864 477777 8
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.||++++||+... ..++..++. |...|.++.|++..+..+++++.|++|++|+...+.. +.+ ..+|...|
T Consensus 81 GDGSLrl~d~~~~--s~Pi~~~kE---H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S---v~T--f~gh~~~I 150 (311)
T KOG0277|consen 81 GDGSLRLFDLTMP--SKPIHKFKE---HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS---VQT--FNGHNSCI 150 (311)
T ss_pred cCceEEEeccCCC--CcchhHHHh---hhhheEEeccccccceeEEeeccCCceEeecCCCCcc---eEe--ecCCccEE
Confidence 9999999996533 456666665 7788999999998888999999999999999988775 333 46799999
Q ss_pred eEEEecc-CCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 378 MGVAGMQ-QKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 378 ~~l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
...+|+| .++++++++.|+.+++||++. |+.+....+...+.+..|+..+. .++++|+.|+.|+.||+++.+.++.
T Consensus 151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--~vl~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--NVLATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred EEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--cEEEecCCCceEEEEehhhccccce
Confidence 9999999 578999999999999999987 45444444446788888887654 5899999999999999998876554
Q ss_pred eeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC-CCEEEEEEcCC
Q 009203 456 AFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS-HPLLISISSDL 533 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~-~~~l~s~~~dg 533 (540)
++.+|.-.|..+.|||. ...||+++.|-+++|||.... ...+.+...|+.-|..+.|++- ..++|+++.|+
T Consensus 229 ------eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 229 ------ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ-DSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred ------eecCCceEEEEEecCcchhhHhhhccccceEEecccccc-hhhhhhhhccceEEeccccccccCceeeeccccc
Confidence 55799999999999996 467999999999999999864 5677788889999999999974 56899999999
Q ss_pred cEEEEe
Q 009203 534 NIGLHK 539 (540)
Q Consensus 534 ~v~iw~ 539 (540)
.++||+
T Consensus 302 ~l~Vw~ 307 (311)
T KOG0277|consen 302 LLYVWN 307 (311)
T ss_pred ceeeec
Confidence 999997
No 55
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.9e-32 Score=248.99 Aligned_cols=298 Identities=15% Similarity=0.211 Sum_probs=235.0
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+++|+..|.++++.| .|..|++|+.|.+|++||+......... +....+.....|.++.|++.|..|++. +.
T Consensus 163 l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~---fr~l~P~E~h~i~sl~ys~Tg~~iLvv----sg 234 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRS---FRQLQPCETHQINSLQYSVTGDQILVV----SG 234 (641)
T ss_pred ccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchh---hhccCcccccccceeeecCCCCeEEEE----ec
Confidence 589999999999999 6999999999999999999876532222 222224556779999999999999988 88
Q ss_pred CCeEEEEecCCCCCceeEEeec---------CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee
Q 009203 299 DSQISVLNLNKTKGRACVTFLD---------DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH 369 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 369 (540)
....+|+|-+.. ..+.... .-.+|...++|.+|+|.+...|+|++.||+++|||+...+.. .+++.
T Consensus 235 ~aqakl~DRdG~---~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q--~qVik 309 (641)
T KOG0772|consen 235 SAQAKLLDRDGF---EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ--LQVIK 309 (641)
T ss_pred CcceeEEccCCc---eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh--eeEEe
Confidence 999999998743 2222222 223577889999999988899999999999999999876531 22222
Q ss_pred ---cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--e----eeeccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203 370 ---RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--D----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGR 440 (540)
Q Consensus 370 ---~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 440 (540)
..+..-.++.++|+++|++|++|+.||.|.+|+..+... . ..|..+..+.++.|++++ .+|++-+.|+
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg---~~LlSRg~D~ 386 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG---NYLLSRGFDD 386 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc---chhhhccCCC
Confidence 123445789999999999999999999999999864322 1 124555689999999998 7999999999
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC------CCcEEEEeccCCCCcccccccccccce
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA------DPVIHLFDIRYSANKPSQSIRAHQKRV 514 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~h~~~i 514 (540)
++++||++..+.++.... --....+-+.++|||+.++|++|.. .|.+.+||..+ ...+..+......|
T Consensus 387 tLKvWDLrq~kkpL~~~t----gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t--~d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRT----GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT--LDTVYKIDISTASV 460 (641)
T ss_pred ceeeeeccccccchhhhc----CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc--eeeEEEecCCCceE
Confidence 999999998876655431 1112235578899999999999864 47899999987 67777777778889
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 515 FKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
..+.|+|.-+.|+.|+.||+++||
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEeecchhhheeeecCCCceEEE
Confidence 999999999999999999999986
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-32 Score=258.04 Aligned_cols=286 Identities=15% Similarity=0.219 Sum_probs=242.5
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.||...|.++++|.| ...+++|+ .+.++||+..+.++++++.. +.+.+..|.|.++++++| ..
T Consensus 369 ~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~~t~kciRTi~~----------~y~l~~~Fvpgd~~Iv~G----~k 432 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNRDTLKCIRTITC----------GYILASKFVPGDRYIVLG----TK 432 (888)
T ss_pred eccchhheeEEEeecC-ceeeeecC-CCcEEEEEccCcceeEEecc----------ccEEEEEecCCCceEEEe----cc
Confidence 5799999999999985 66666665 56899999999999988843 258899999999999999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--ccccceee-----cc
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED--SWKPKALH-----RN 371 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~-----~~ 371 (540)
+|.+.+||+.+. ..+.... .|.+.|++++.+| ++..+++|+.|.+|++||..--.. ..+.+.+. ..
T Consensus 433 ~Gel~vfdlaS~---~l~Eti~---AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL 505 (888)
T KOG0306|consen 433 NGELQVFDLASA---SLVETIR---AHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL 505 (888)
T ss_pred CCceEEEEeehh---hhhhhhh---ccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence 999999999975 3333333 4789999999999 999999999999999999752111 00011111 11
Q ss_pred cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
.-...|.|+.+||||++|+++--|.++++|-+.+-+.... +.+.-++.++..+|++ .++++|+.|.+|++|-+.-+
T Consensus 506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS---klivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS---KLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc---CeEEeccCCCceEEeccccc
Confidence 2457899999999999999999999999999998776443 5666788888888888 79999999999999999988
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
.+.. .+-+|...|.++.|-|+...++++|.|+.|+-||-.. ...+..+.+|...|++++.+|+|.+++|+|
T Consensus 583 DCHK-------S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 583 DCHK-------SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred hhhh-------hhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 8754 4457999999999999999999999999999999997 889999999999999999999999999999
Q ss_pred cCCcEEEEe
Q 009203 531 SDLNIGLHK 539 (540)
Q Consensus 531 ~dg~v~iw~ 539 (540)
.|.+|++|.
T Consensus 654 hD~sIRlwE 662 (888)
T KOG0306|consen 654 HDKSIRLWE 662 (888)
T ss_pred CCceeEeee
Confidence 999999996
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=234.38 Aligned_cols=303 Identities=16% Similarity=0.174 Sum_probs=237.7
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC----Ccceeec------ccccCCCCCCCCceeEEEecCCCe
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG----SGASLLS------TTDCLSPKHRRWPEDIAWHPQGNS 288 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~----~~~~~~~------~~~~~~~~h~~~V~~~~~~~~~~~ 288 (540)
+..|++++.+-+|+|| |.++|||+.|..|+|.|++..- ....... ..-...-.|.+.|+++.|+|....
T Consensus 108 lt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4689999999999997 9999999999999999987210 0000000 000011368899999999999999
Q ss_pred EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203 289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL 368 (540)
Q Consensus 289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 368 (540)
|+++ +.|++|++||+.....++..+.+.. ..+|.++.|+| .|.+|+.|....++++||+.+-++.....
T Consensus 187 LiS~----srD~tvKlFDfsK~saKrA~K~~qd----~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvsan-- 255 (430)
T KOG0640|consen 187 LISG----SRDNTVKLFDFSKTSAKRAFKVFQD----TEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSAN-- 255 (430)
T ss_pred EEec----cCCCeEEEEecccHHHHHHHHHhhc----cceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecC--
Confidence 9999 9999999999986654455555553 46799999999 99999999999999999999988633222
Q ss_pred ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203 369 HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLY 445 (540)
Q Consensus 369 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 445 (540)
....|.+.|+++.+++.|++.++++.||.|++||--+++++..+. .+..+.+..|..++ +++++.+.|..|++|
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~---kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG---KYILSSGKDSTVKLW 332 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC---eEEeecCCcceeeee
Confidence 335699999999999999999999999999999999898876643 34677888888877 899999999999999
Q ss_pred ECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC
Q 009203 446 DIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP 524 (540)
Q Consensus 446 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~ 524 (540)
.+.++.......+.- ..+...--+...|+....|++.-. ..+.+.-||.++.....+ --.+|.+.+..+.-+|.+.
T Consensus 333 Ei~t~R~l~~YtGAg--~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l-~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAG--TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL-LSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred eecCCceEEEEecCC--cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh-cccCCCCCceEEEeCCCCC
Confidence 999998777655421 112222234456777777776654 357899999998522222 2347999999999999999
Q ss_pred EEEEEEcCCcEEEEe
Q 009203 525 LLISISSDLNIGLHK 539 (540)
Q Consensus 525 ~l~s~~~dg~v~iw~ 539 (540)
.+++||.|..+++|-
T Consensus 410 ~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWY 424 (430)
T ss_pred ceeeecccceeeeee
Confidence 999999999999994
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.9e-31 Score=219.68 Aligned_cols=284 Identities=18% Similarity=0.270 Sum_probs=235.2
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~ 296 (540)
-+.+|...|.+|+|+.+ |..|++|+.|+++++|+++........ ...+|.+.|-.++|+|. .+.|+++
T Consensus 15 ~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~------~~~gh~~svdql~w~~~~~d~~ata---- 83 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKEL------VYRGHTDSVDQLCWDPKHPDLFATA---- 83 (313)
T ss_pred HhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhh------cccCCCcchhhheeCCCCCcceEEe----
Confidence 35799999999999996 999999999999999999876433222 22689999999999884 5688888
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|..|++||+..+ ++...... .+.-.-+.|+| ++.+++.++.|..|.+.|.++.+. .......-.
T Consensus 84 s~dk~ir~wd~r~~---k~~~~i~~----~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~------~~~~~~~~e 149 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSG---KCTARIET----KGENINITWSP-DGEYIAVGNKDDRITFIDARTYKI------VNEEQFKFE 149 (313)
T ss_pred cCCceEEEEEeccC---cEEEEeec----cCcceEEEEcC-CCCEEEEecCcccEEEEEecccce------eehhcccce
Confidence 99999999999987 44544443 23345688999 999999999999999999998763 222224556
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
+..++|+-++++++.....|+|.|......+++.... +...|.++.|+|.+ +++++|+.|..+.+||+...-+..
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G---ryfA~GsADAlvSLWD~~ELiC~R- 225 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG---RYFATGSADALVSLWDVDELICER- 225 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC---ceEeeccccceeeccChhHhhhhe-
Confidence 8889999888888888888999999998888877644 45889999999998 899999999999999998665543
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC---
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD--- 532 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d--- 532 (540)
.+..+..+|..+.||.||++||+|++|..|-|=++.+ +..+..++ +.++-..++|+|...+||-++.|
T Consensus 226 ------~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vet--Gd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 226 ------CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVET--GDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred ------eeccccCceEEEEeccCcceeeccCccceEEeEeccc--CCeEEEee-ccCCceeEEecCCCceeeEEecCCCC
Confidence 4467889999999999999999999999999999998 66676666 77889999999999999988765
Q ss_pred ------CcEEEEe
Q 009203 533 ------LNIGLHK 539 (540)
Q Consensus 533 ------g~v~iw~ 539 (540)
|.|++|-
T Consensus 297 d~~reag~vKiFG 309 (313)
T KOG1407|consen 297 DSNREAGTVKIFG 309 (313)
T ss_pred ccccccceeEEec
Confidence 5677763
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.1e-30 Score=242.96 Aligned_cols=281 Identities=24% Similarity=0.378 Sum_probs=232.5
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK 223 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~ 223 (540)
..+.+|...|.++.+.|... .++++..++.+.+|+.. ..+.+|.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-------------------------------~l~~~~~~g~i~i~~~~~~~~~~~~~~~~ 51 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-------------------------------LLATGSGDGTIKVWDLETGELLRTLKGHT 51 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-------------------------------EEEEeecCcEEEEEEeeCCCcEEEEecCC
Confidence 34568889999999988632 45666678999999764 4578899
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
..+.++.|+|+ +.+|++++.||.|++|++..++....+ ..|...|.++.|++++.+++++ +.++.|.
T Consensus 52 ~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~----~~~~~i~ 118 (289)
T cd00200 52 GPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTL--------TGHTSYVSSVAFSPDGRILSSS----SRDKTIK 118 (289)
T ss_pred cceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEE--------eccCCcEEEEEEcCCCCEEEEe----cCCCeEE
Confidence 99999999996 789999999999999999987655554 4677789999999998888888 7799999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
+||+.++ .....+.. |...+.+++|+| ++.++++++.|+.|++||+++++. ...+ ..|...+.++.|+
T Consensus 119 ~~~~~~~---~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~---~~~~--~~~~~~i~~~~~~ 186 (289)
T cd00200 119 VWDVETG---KCLTTLRG---HTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKC---VATL--TGHTGEVNSVAFS 186 (289)
T ss_pred EEECCCc---EEEEEecc---CCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEcccccc---ceeE--ecCccccceEEEC
Confidence 9999865 34444443 567899999999 788888888899999999987764 2222 3577899999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc
Q 009203 384 QQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE 462 (540)
Q Consensus 384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 462 (540)
|+++.+++++.++.|++||++.++.+... .....+.++.++|++ .++++++.+|.|++||+.++.... .
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~i~i~~~~~~~~~~-------~ 256 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG---YLLASGSEDGTIRVWDLRTGECVQ-------T 256 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC---cEEEEEcCCCcEEEEEcCCceeEE-------E
Confidence 99999999999999999999988877666 555688899999975 688888889999999998765433 3
Q ss_pred cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 463 SSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
+..|...|.+++|+|++.+|++++.||.|++|+
T Consensus 257 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 346788999999999999999999999999996
No 60
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3.1e-30 Score=231.07 Aligned_cols=268 Identities=18% Similarity=0.218 Sum_probs=222.7
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
.+.+++.|.++.+++.. .+++||+..|+.+.|+|+ ...+++++.|..|+||........... ..|.
T Consensus 233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~~--------~~h~ 303 (506)
T KOG0289|consen 233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTSS--------RPHE 303 (506)
T ss_pred cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCcccc--------cccc
Confidence 46778889889998775 568999999999999996 889999999999999999876543333 5799
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
.+|+.+..+|.|.||+++ +.|++..+.|+.++ .++...... ...-.+++.+|+| ||.+|.+|..||.|+||
T Consensus 304 ~~V~~ls~h~tgeYllsA----s~d~~w~Fsd~~~g---~~lt~vs~~-~s~v~~ts~~fHp-DgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSA----SNDGTWAFSDISSG---SQLTVVSDE-TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIW 374 (506)
T ss_pred ccceeeeeccCCcEEEEe----cCCceEEEEEccCC---cEEEEEeec-cccceeEEeeEcC-CceEEeccCCCceEEEE
Confidence 999999999999999999 99999999999987 334333321 1234589999999 99999999999999999
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 434 (540)
|+..+.. .....+|.++|..++|+.+|.+|++++.|+.|++||+|..+....+.
T Consensus 375 dlks~~~-----~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~--------------------- 428 (506)
T KOG0289|consen 375 DLKSQTN-----VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ--------------------- 428 (506)
T ss_pred EcCCccc-----cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee---------------------
Confidence 9998764 33336699999999999999999999999999999999654211110
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccce
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRV 514 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i 514 (540)
+. ....+.++.|++.|.+|+.++.|=.|++++-.+.....+..+..|.+..
T Consensus 429 ------------l~-----------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s 479 (506)
T KOG0289|consen 429 ------------LD-----------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS 479 (506)
T ss_pred ------------cc-----------------ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccc
Confidence 00 1125888999999999999988888888887665577888888999999
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 515 FKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+++.|....++++++|.|..++++.+
T Consensus 480 t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 480 TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeecccceEEeeccchhheEEeec
Confidence 99999999999999999999998864
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-32 Score=226.82 Aligned_cols=283 Identities=18% Similarity=0.208 Sum_probs=234.0
Q ss_pred cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccCce
Q 009203 152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKRKL 226 (540)
Q Consensus 152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V 226 (540)
.+|+.+|-.+++.|-.| ..+.+.+++.|+.-.+-+++ .++.||.+.|
T Consensus 11 ~ghtrpvvdl~~s~itp----------------------------~g~flisa~kd~~pmlr~g~tgdwigtfeghkgav 62 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITP----------------------------DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAV 62 (334)
T ss_pred cCCCcceeEEeccCCCC----------------------------CceEEEEeccCCCchhccCCCCCcEEeeeccCcce
Confidence 47777777777777644 11234444555554444333 4689999999
Q ss_pred EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN 306 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd 306 (540)
++..++. +....|+++.|-+.+|||.-++..+..+ .|..-|.+++|+.|.++|++| +.+..++|||
T Consensus 63 w~~~l~~-na~~aasaaadftakvw~a~tgdelhsf---------~hkhivk~~af~~ds~~lltg----g~ekllrvfd 128 (334)
T KOG0278|consen 63 WSATLNK-NATRAASAAADFTAKVWDAVTGDELHSF---------EHKHIVKAVAFSQDSNYLLTG----GQEKLLRVFD 128 (334)
T ss_pred eeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhh---------hhhheeeeEEecccchhhhcc----chHHHhhhhh
Confidence 9999998 4788899999999999999999877776 688889999999999999999 9999999999
Q ss_pred cCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC
Q 009203 307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK 386 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 386 (540)
++..+ .....+.+ |.+.|..+-|.. ..+.|++.+.|++|++||.+++.. .+.+. ....|+++.++++|
T Consensus 129 ln~p~--App~E~~g---htg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~---v~sL~---~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 129 LNRPK--APPKEISG---HTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTE---VQSLE---FNSPVTSLEVSQDG 196 (334)
T ss_pred ccCCC--CCchhhcC---CCCcceeEEEec-cCceEEeeccCCceEEEEeccCcE---EEEEe---cCCCCcceeeccCC
Confidence 98762 33444443 678899999998 778888889999999999999986 33333 45779999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203 387 QIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES 466 (540)
Q Consensus 387 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 466 (540)
.+|.++ ..+.|.+||..+-..+........+.+...+|.. ..+++|+.|..++.||..++..... ..++|
T Consensus 197 ~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k---~~fVaGged~~~~kfDy~TgeEi~~------~nkgh 266 (334)
T KOG0278|consen 197 RILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK---EFFVAGGEDFKVYKFDYNTGEEIGS------YNKGH 266 (334)
T ss_pred CEEEEe-cCceeEEeccccccceeeccCccccccccccCCC---ceEEecCcceEEEEEeccCCceeee------cccCC
Confidence 987665 4568999999999999999999999999999987 5899999999999999999886443 24789
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 467 QSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 467 ~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.++|.|+.|+|+|...++|+.||+|++|.+..
T Consensus 267 ~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 267 FGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 99999999999999999999999999999986
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-31 Score=234.74 Aligned_cols=265 Identities=12% Similarity=0.142 Sum_probs=215.7
Q ss_pred eEEecCCCCeEEEeccc--------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCC
Q 009203 200 LVRTSASPATIHCHTSN--------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP 271 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~--------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 271 (540)
.+|+++.|.+..+|... +++.||..+|.-+.|||| .++|++|+.|..+.+||+.++.....+. .
T Consensus 238 yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv~tgd~~~~y~-------~ 309 (519)
T KOG0293|consen 238 YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLWDVDTGDLRHLYP-------S 309 (519)
T ss_pred eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC-CCeEEecCchHheeeccCCcchhhhhcc-------c
Confidence 57888899999999432 568999999999999997 8899999999999999999998766653 2
Q ss_pred CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203 272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV 351 (540)
Q Consensus 272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 351 (540)
+|...+.+++|.|||..+++| +.|+++..||++.. .....++. ....|.+++..+ ||.++++.+.|..|
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~G----s~dr~i~~wdlDgn----~~~~W~gv--r~~~v~dlait~-Dgk~vl~v~~d~~i 378 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTG----SPDRTIIMWDLDGN----ILGNWEGV--RDPKVHDLAITY-DGKYVLLVTVDKKI 378 (519)
T ss_pred CcCCCcceeEEccCCceeEec----CCCCcEEEecCCcc----hhhccccc--ccceeEEEEEcC-CCcEEEEEecccce
Confidence 456789999999999999999 99999999999853 12222221 124599999999 99999999999999
Q ss_pred EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCC
Q 009203 352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDF 428 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~ 428 (540)
++|+..+... ...+ ....+|++++.|.+|+++++--.+..+++||+.....+..+ ..+..+..-+|...+.
T Consensus 379 ~l~~~e~~~d---r~li---se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 379 RLYNREARVD---RGLI---SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred eeechhhhhh---hccc---cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 9999988654 1111 14567999999999999999999999999999977665543 3344455555544332
Q ss_pred CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccC
Q 009203 429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~ 498 (540)
.++++|+.|+.|+||+..++.... .+.||...|++++|+|.. .++|+++.||+|+||....
T Consensus 453 --~fiaSGSED~kvyIWhr~sgkll~-------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 453 --KFIASGSEDSKVYIWHRISGKLLA-------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred --ceEEecCCCceEEEEEccCCceeE-------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 599999999999999999888644 678999999999999954 6789999999999998774
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=258.82 Aligned_cols=274 Identities=19% Similarity=0.264 Sum_probs=222.3
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
..-+..|.+++|+| ...+++++-..|.|++||...+.++..+ ..|.++|..++|+|.+.++++| +.|
T Consensus 6 EskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rF--------deHdGpVRgv~FH~~qplFVSG----GDD 72 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRF--------DEHDGPVRGVDFHPTQPLFVSG----GDD 72 (1202)
T ss_pred hcccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhh--------hccCCccceeeecCCCCeEEec----CCc
Confidence 34457799999999 5999999999999999999998887777 5899999999999999999999 999
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
-.|++|+..+. +|+.++.+ |-+.|..+.|++ .-.+|+++|.|.+|+||+..++.+ +..+ .+|...|+|
T Consensus 73 ykIkVWnYk~r---rclftL~G---HlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~---iavl--tGHnHYVMc 140 (1202)
T KOG0292|consen 73 YKIKVWNYKTR---RCLFTLLG---HLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKC---IAVL--TGHNHYVMC 140 (1202)
T ss_pred cEEEEEecccc---eehhhhcc---ccceeEEeeccC-CCceEEEccCCCeEEEEeccCCce---EEEE--ecCceEEEe
Confidence 99999999974 66766665 778899999999 889999999999999999999987 3444 569999999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
..|+|....++++|-|.+|++||+..-+...... + ++.-...+..+..=+.|+.|-.|
T Consensus 141 AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~p--g---~~e~~~~~~~~~~dLfg~~DaVV----------------- 198 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAP--G---SLEDQMRGQQGNSDLFGQTDAVV----------------- 198 (1202)
T ss_pred eccCCccceEEEecccceEEEEeecchhccCCCC--C---CchhhhhccccchhhcCCcCeee-----------------
Confidence 9999999999999999999999997433211110 0 00000000000000111112111
Q ss_pred ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
+..+.||...|+-++|+|.-..|++|+.|..|++|.++....-.+.++.+|.+.|.++-|+|...+++|.|+|++|+|||
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 22568999999999999999999999999999999998643446778899999999999999999999999999999999
Q ss_pred C
Q 009203 540 I 540 (540)
Q Consensus 540 l 540 (540)
+
T Consensus 279 m 279 (1202)
T KOG0292|consen 279 M 279 (1202)
T ss_pred c
Confidence 6
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-31 Score=239.55 Aligned_cols=277 Identities=15% Similarity=0.204 Sum_probs=232.1
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
+.|++++|+|....-+|+.+. -.|.||+..+.....++ ....+.|.++.|..||++|++| ...|.|+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~--------srFk~~v~s~~fR~DG~LlaaG----D~sG~V~ 93 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF--------SRFKDVVYSVDFRSDGRLLAAG----DESGHVK 93 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH--------HhhccceeEEEeecCCeEEEcc----CCcCcEE
Confidence 689999999965555666553 47999999887665555 2445678999999999999999 9999999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
|||+.+ ...++.+.. |..+|..+.|+|.++..|++|+.|+.+++||+.+.. . .....+|++.|.|.+|+
T Consensus 94 vfD~k~---r~iLR~~~a---h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v-~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 94 VFDMKS---RVILRQLYA---HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----V-QAELSGHTDYVRCGDIS 162 (487)
T ss_pred Eecccc---HHHHHHHhh---ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----E-EEEecCCcceeEeeccc
Confidence 999665 234555554 788999999999999999999999999999999876 2 44557899999999999
Q ss_pred cC-CCEEEEEeCCCeEEEEECCCC-CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203 384 QQ-KQIVLSAGADKRIIGFDAGVG-RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ 461 (540)
Q Consensus 384 ~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 461 (540)
|. +.++++|+.||.|++||++.. ..+....++.++-++.+-|.+ ..+++++ .+.|++||+.++.....
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg---s~iasAg-Gn~vkVWDl~~G~qll~------ 232 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG---SLIASAG-GNSVKVWDLTTGGQLLT------ 232 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC---CEEEEcC-CCeEEEEEecCCceehh------
Confidence 85 558999999999999999987 667788899999999999987 4666665 46899999997776543
Q ss_pred ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
....|...|+|+.+..++..|++|+-|+.+++||+.+ .+.+..+. ..++|.+++.+|+++.++.|-.||.+.+
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~--~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN--YKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred hhhcccceEEEEEeecCCceEeecccccceEEEEccc--eEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 2344889999999999999999999999999999876 67777776 5679999999999999999999998765
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-30 Score=214.16 Aligned_cols=259 Identities=14% Similarity=0.133 Sum_probs=211.7
Q ss_pred EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR 275 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~ 275 (540)
+.+...|+++++|+.. +++.||...|..++.+.| ...+++|+.|..|.+||+++++..+.+ .+|.+
T Consensus 32 ~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~TGkv~Rr~--------rgH~a 102 (307)
T KOG0316|consen 32 CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVWDVNTGKVDRRF--------RGHLA 102 (307)
T ss_pred EEEcCCCceEEeecccccceeeeecCCCceeeecccccc-ccccccCCCCceEEEEEcccCeeeeec--------ccccc
Confidence 4456779999999775 568999999999999997 778999999999999999999998888 79999
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.|+.++|+.+...+++| +.|.++++||.++.. .++++.+.. ..+.|.++..+ +..|++|+.||+++.||
T Consensus 103 qVNtV~fNeesSVv~Sg----sfD~s~r~wDCRS~s-~ePiQilde---a~D~V~Si~v~---~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASG----SFDSSVRLWDCRSRS-FEPIQILDE---AKDGVSSIDVA---EHEIVAGSVDGTVRTYD 171 (307)
T ss_pred eeeEEEecCcceEEEec----cccceeEEEEcccCC-CCccchhhh---hcCceeEEEec---ccEEEeeccCCcEEEEE
Confidence 99999999999999999 999999999999653 466777765 45679999984 57899999999999999
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCceE
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 432 (540)
++.|.. .. .....+|+++.|+++++..+.++.|+++++.|-.+|+.+..+ .....-...+++... ..
T Consensus 172 iR~G~l-----~s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd---th 241 (307)
T KOG0316|consen 172 IRKGTL-----SS--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD---TH 241 (307)
T ss_pred eeccee-----eh--hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc---ee
Confidence 999874 22 235678999999999999999999999999999999987653 333444455555555 68
Q ss_pred EEEEcCCCeEEEEECCCCcceeeeeccccccCccccC-eEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA-LINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
+++|+.||.|++||+........ +..+... |++++++|.-..++++.. +.+.+|--.
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~sk-------~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQISK-------LSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE 299 (307)
T ss_pred EEeccCCceEEEEEeccceeeee-------eccCCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence 99999999999999987765432 2334444 889999998877777754 446666443
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.5e-31 Score=253.93 Aligned_cols=302 Identities=15% Similarity=0.124 Sum_probs=211.6
Q ss_pred cc-cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCC-----CCCCCCceeEEEecCCCeEEEE
Q 009203 219 SS-LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-----PKHRRWPEDIAWHPQGNSLFSA 292 (540)
Q Consensus 219 ~~-~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~~~~~~~~~~l~s~ 292 (540)
+. +|.+.|+++.||+| |+|||+||.||.|+||.+...+....-.....+.. .+...++..-.-...++....-
T Consensus 262 ~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred cccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 44 99999999999996 99999999999999999976443111100000000 0000000000000001111110
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
.+.....+.+-+..-.-...++..+.+ |.+.|..+.|+ .+++|++++.|.+|++|++....| +..+ .
T Consensus 341 --~~~~s~~~~~p~~~f~f~ekP~~ef~G---Ht~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~C---L~~F---~ 407 (712)
T KOG0283|consen 341 --KGSQSPCVLLPLKAFVFSEKPFCEFKG---HTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKEC---LKVF---S 407 (712)
T ss_pred --cccCCccccCCCccccccccchhhhhc---cchhheecccc--cCCeeEeccccccEEeecCCCcce---eeEE---e
Confidence 001222222211111111233444444 78899999999 567899999999999999998887 3333 3
Q ss_pred CCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 373 HSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 373 ~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
|.+.|+|++|+| |.+++++|+-||.|+||++...+.+.......-+.++++.|+| .+.++|+.+|.+++|+....+
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG---k~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG---KGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC---ceEEEEEeccEEEEEEccCCe
Confidence 999999999999 7899999999999999999988888888888999999999997 799999999999999998765
Q ss_pred ceeeee-cccc-ccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCccccccccccc--ceeEEEEcCCCCEE
Q 009203 452 TEIHAF-GWKQ-ESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQK--RVFKAVWHYSHPLL 526 (540)
Q Consensus 452 ~~~~~~-~~~~-~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~--~i~~l~~s~~~~~l 526 (540)
...... .... .-..|. .|+++.|.|.. ..|++.+.|..|+|||.+. ..++..++++.. .-....|+.||++|
T Consensus 485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--KDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc--hhhhhhhcccccCCcceeeeEccCCCEE
Confidence 332211 0011 112233 79999999843 3577777999999999986 678888886543 34567899999999
Q ss_pred EEEEcCCcEEEEeC
Q 009203 527 ISISSDLNIGLHKI 540 (540)
Q Consensus 527 ~s~~~dg~v~iw~l 540 (540)
+++++|..|+||++
T Consensus 562 Vs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 562 VSASEDSWVYIWKN 575 (712)
T ss_pred EEeecCceEEEEeC
Confidence 99999999999985
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=2.7e-30 Score=227.85 Aligned_cols=279 Identities=17% Similarity=0.272 Sum_probs=223.3
Q ss_pred ecccccccce-------EEecCCCCeEEEeccc----hhcccccCceEEEEEecC--CCcEEEEEeCCceEEEEEcCCCC
Q 009203 191 QKEHRELIPL-------VRTSASPATIHCHTSN----HVSSLHKRKLRSLSLNPV--NEQLFVTSALDGVIRLWQLQSRG 257 (540)
Q Consensus 191 ~~~~~~~v~~-------~~~~~~d~~i~~~~~~----~~~~~h~~~V~~l~~spd--~~~~l~tg~~dg~v~iw~~~~~~ 257 (540)
.--|+.+|.. +-+++-|+++++|+.. .++.||.++|.+++|.-- ....|++++.|.++++|..+.+.
T Consensus 101 ~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cccchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 3456666644 5577789999999765 568999999999988541 23369999999999999998877
Q ss_pred CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC----------------------Ccee
Q 009203 258 SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK----------------------GRAC 315 (540)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~----------------------~~~~ 315 (540)
......... .||...|-+++..++|..+++| +.|..|.||+..+.. ....
T Consensus 181 ~~~~~~~~~----~GHk~~V~sVsv~~sgtr~~Sg----S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 181 NKVKALKVC----RGHKRSVDSVSVDSSGTRFCSG----SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred hhhhHHhHh----cccccceeEEEecCCCCeEEee----cccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 544433221 4999999999999999999999 999999999933211 0123
Q ss_pred EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203 316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD 395 (540)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 395 (540)
+..+. +|..+|.++.|++ ...+++++.|.+|+.||+.++.+.. .+. ....++++.++|...+|++|+.|
T Consensus 253 ~vtl~---GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~---~~~---~~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 253 LVTLE---GHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKS---TLT---TNKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred eEEec---ccccceeeEEEcC--CCceEeecccceEEEEEeeccccee---eee---cCcceeEeecccccceeeecCCC
Confidence 33444 4789999999985 6789999999999999999998622 221 45679999999999999999999
Q ss_pred CeEEEEECCCCCe--e--eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeE
Q 009203 396 KRIIGFDAGVGRA--D--FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI 471 (540)
Q Consensus 396 g~i~iwd~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (540)
..+++||.+++.- + ....+...+.++.|+|.+. ..|++|+.|+++++||+++...++. .+.+|...|.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~--~~~~S~S~D~t~klWDvRS~k~ply------dI~~h~DKvl 393 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE--FQLVSGSYDNTVKLWDVRSTKAPLY------DIAGHNDKVL 393 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCc--eEEEEEecCCeEEEEEeccCCCcce------eeccCCceEE
Confidence 9999999998643 2 1244556888999999876 5899999999999999998875554 4578999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 472 NQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 472 ~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
++.|. ++.+|++|+.|.+|+|+...
T Consensus 394 ~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEecc-CCceEEeccCcceEEEeccc
Confidence 99998 57799999999999999765
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-30 Score=242.07 Aligned_cols=275 Identities=13% Similarity=0.205 Sum_probs=226.6
Q ss_pred EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN 306 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd 306 (540)
+-++|+. ...||.|.. ..|.+|+..++....-. ..+.+.|+++.|+++|.+|++| ..+|.|.|||
T Consensus 181 nlldWss--~n~laValg-~~vylW~~~s~~v~~l~--------~~~~~~vtSv~ws~~G~~LavG----~~~g~v~iwD 245 (484)
T KOG0305|consen 181 NLLDWSS--ANVLAVALG-QSVYLWSASSGSVTELC--------SFGEELVTSVKWSPDGSHLAVG----TSDGTVQIWD 245 (484)
T ss_pred hHhhccc--CCeEEEEec-ceEEEEecCCCceEEeE--------ecCCCceEEEEECCCCCEEEEe----ecCCeEEEEe
Confidence 4467884 567888764 47999999988732222 1236789999999999999999 9999999999
Q ss_pred cCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC
Q 009203 307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK 386 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 386 (540)
..+. ..+..+.+ +|...|.+++|. +..+.+|+.|+.|.++|++..+.... ...+|...|..+.|++|+
T Consensus 246 ~~~~---k~~~~~~~--~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~qeVCgLkws~d~ 313 (484)
T KOG0305|consen 246 VKEQ---KKTRTLRG--SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVS----TLQGHRQEVCGLKWSPDG 313 (484)
T ss_pred hhhc---cccccccC--CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhh----hhhcccceeeeeEECCCC
Confidence 9875 33555544 377889999995 57899999999999999999875322 246799999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEE--cCCCeEEEEECCCCcceeeeecccccc
Q 009203 387 QIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTG--TPGRQLRLYDIRLRQTEIHAFGWKQES 463 (540)
Q Consensus 387 ~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~ 463 (540)
.++++|+.|+.+.|||.....+... ..+...+.+++|+|.... +||+| +.|++|++||..++......
T Consensus 314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~--lLAsGGGs~D~~i~fwn~~~g~~i~~v------- 384 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG--LLATGGGSADRCIKFWNTNTGARIDSV------- 384 (484)
T ss_pred CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccC--ceEEcCCCcccEEEEEEcCCCcEeccc-------
Confidence 9999999999999999976665444 667788889999998765 56664 67999999999987754432
Q ss_pred CccccCeEEEEEcCCCCEEEEE--eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 464 SESQSALINQSWSPDGLYITSG--SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 464 ~~~~~~v~~~~~sp~g~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
...+.|+++.|++..+-|+++ ..++.|.||++.+ .+++..+.+|...|..++++|||..+++|+.|.++++|++
T Consensus 385 -dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 385 -DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred -ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 245689999999998777754 4678999999998 8899999999999999999999999999999999999985
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=9.7e-30 Score=214.13 Aligned_cols=279 Identities=13% Similarity=0.139 Sum_probs=215.2
Q ss_pred eEEecCCCCeEEEe---ccc--hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 200 LVRTSASPATIHCH---TSN--HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 200 ~~~~~~~d~~i~~~---~~~--~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
.+-+...|.++.+| +++ ..+.||++.|+|++.+-+ ..+|+||+.|.++++||+.+++.+.++.. .
T Consensus 24 LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~tGk~la~~k~---------~ 93 (327)
T KOG0643|consen 24 LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVETGKQLATWKT---------N 93 (327)
T ss_pred EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcCCCcEEEEeec---------C
Confidence 34455678888998 555 458999999999999995 89999999999999999999998877743 3
Q ss_pred CCceeEEEecCCCeEEEEeec-CCCCCeEEEEecCCCC----CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203 275 RWPEDIAWHPQGNSLFSAHTA-DSGDSQISVLNLNKTK----GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH 349 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~-~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 349 (540)
.+|..+.|+++|++++.+... -+..+.|.++|++... ...++..+.. +.+.++.+-|.| .+..|++|..||
T Consensus 94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---~~skit~a~Wg~-l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---PDSKITSALWGP-LGETIIAGHEDG 169 (327)
T ss_pred CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---Cccceeeeeecc-cCCEEEEecCCC
Confidence 568999999999988876211 1355789999998443 2333433333 357799999999 999999999999
Q ss_pred cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203 350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN 429 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (540)
.|.+||++++.. ..-....|...|+.+++++|..++++++.|.+-++||.++.+.+..+....++.+.+++|...
T Consensus 170 ~is~~da~~g~~----~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d- 244 (327)
T KOG0643|consen 170 SISIYDARTGKE----LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD- 244 (327)
T ss_pred cEEEEEcccCce----eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc-
Confidence 999999999864 222224588999999999999999999999999999999999999999999999999998652
Q ss_pred ceEEEEEcCCC-eEEEEECCCCcceeeeec-----cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 430 LFMVQTGTPGR-QLRLYDIRLRQTEIHAFG-----WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 430 ~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
..++.|+.+- .|.--+.+.++-..+.+. .....++|-++|++++|+|+|+..++|++||.|++.-++.
T Consensus 245 -~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 245 -HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred -eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 2333333331 122222222221111110 1235689999999999999999999999999999987764
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=216.48 Aligned_cols=288 Identities=19% Similarity=0.243 Sum_probs=238.1
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
..+.||.++|+.++... ...++.+++.|-+.+||.++++.|+.++ .||.+.|++++|++.+.+++++
T Consensus 142 re~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y--------~GH~GSVNsikfh~s~~L~lTa---- 208 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATY--------TGHTGSVNSIKFHNSGLLLLTA---- 208 (481)
T ss_pred hhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeee--------cccccceeeEEeccccceEEEc----
Confidence 45789999999999987 4779999999999999999999998888 7999999999999999999999
Q ss_pred CCCCeEEEEec------CCCCC-------------------------------ceeEEeecCCCCcccceeEEEEeCCCC
Q 009203 297 SGDSQISVLNL------NKTKG-------------------------------RACVTFLDDKPHVKGIINSIIFLPWEN 339 (540)
Q Consensus 297 ~~d~~i~vwd~------~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~ 339 (540)
+.|++-.||.. ..... ...+..+. .|.+.|.+..|.. .+
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt---gH~~vV~a~dWL~-gg 284 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT---GHRAVVSACDWLA-GG 284 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee---ccccceEehhhhc-Cc
Confidence 99999999972 21100 00111222 4778899999998 99
Q ss_pred CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-eeee-ccCcc
Q 009203 340 PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DFKH-QIESK 417 (540)
Q Consensus 340 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-~~~~~ 417 (540)
+.+++++.|.+..+||+++++. ...+ .+|....+.++-+|..+++++.+.|.+.++||++..-. +..+ .+...
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge~---v~~L--tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGEV---VNIL--TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred ceeeeeeccccceeeeeccCce---eccc--cCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 9999999999999999999985 3333 56999999999999999999999999999999985332 2233 34577
Q ss_pred EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
+.+..|+.++ .+++|+.|.+|++||++++..++..+. ..++++.++.+..+.+|+.--.+..|++||++
T Consensus 360 VTS~vF~~dd----~vVSgSDDrTvKvWdLrNMRsplATIR-------tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 360 VTSVVFNTDD----RVVSGSDDRTVKVWDLRNMRSPLATIR-------TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred eeEEEEecCC----ceeecCCCceEEEeeeccccCcceeee-------cCCccceeEeecCCceEEeccCCceEEEEecC
Confidence 8899998876 799999999999999999887665542 35688999999888899999899999999999
Q ss_pred CCCCccccc-----ccccccceeEEEEcCCC--CEEEEEEcCCcEEEEeC
Q 009203 498 YSANKPSQS-----IRAHQKRVFKAVWHYSH--PLLISISSDLNIGLHKI 540 (540)
Q Consensus 498 ~~~~~~~~~-----~~~h~~~i~~l~~s~~~--~~l~s~~~dg~v~iw~l 540 (540)
. ..+.. -.+|...|+|++|..+- .-|++||-|..+.=|+|
T Consensus 429 G---~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 429 G---NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred C---CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 4 43433 35899999999997554 35899999999999975
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-28 Score=211.73 Aligned_cols=284 Identities=18% Similarity=0.204 Sum_probs=226.3
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+..-.+.|+++.|+++ |.+|++++.|.+++|||..+++...++ ..++..|..++|......++.+++ -.
T Consensus 10 f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti--------~skkyG~~~~~Fth~~~~~i~sSt--k~ 78 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTI--------NSKKYGVDLACFTHHSNTVIHSST--KE 78 (311)
T ss_pred cccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEe--------ecccccccEEEEecCCceEEEccC--CC
Confidence 4455688999999995 999999999999999999999888777 355667888999877776666521 35
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
|.+|+..++.+. +.++.+.+ |...|++++.+| -++.+++++.|++|++||++..++ +.+. +...-.
T Consensus 79 d~tIryLsl~dN---kylRYF~G---H~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~c----qg~l---~~~~~p 144 (311)
T KOG1446|consen 79 DDTIRYLSLHDN---KYLRYFPG---HKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKC----QGLL---NLSGRP 144 (311)
T ss_pred CCceEEEEeecC---ceEEEcCC---CCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCC----ceEE---ecCCCc
Confidence 899999999986 67888887 778999999999 779999999999999999998775 2221 334445
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCC--Ceeeee----ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVG--RADFKH----QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
.++|.|.|-++|++.....|++||++.- .+...+ ........+.|+|+| ++++.+...+.+++.|.-++..
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG---K~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG---KSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC---CEEEEEeCCCcEEEEEccCCcE
Confidence 6899999999999998889999999873 222222 234667889999998 7888899999999999998874
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCEEEEEEc
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
....-+.. ....-....+|+||++++++|+.||+|.+|++.+ +..+..+.+ +.+++.++.|+|.-..++|+
T Consensus 222 ~~tfs~~~----~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t--g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa-- 293 (311)
T KOG1446|consen 222 KSTFSGYP----NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET--GKKVAVLRGPNGGPVSCVRFNPRYAMFVSA-- 293 (311)
T ss_pred eeeEeecc----CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC--CcEeeEecCCCCCCccccccCCceeeeeec--
Confidence 33222111 1111226779999999999999999999999988 788888887 78899999999987777766
Q ss_pred CCcEEEE
Q 009203 532 DLNIGLH 538 (540)
Q Consensus 532 dg~v~iw 538 (540)
+..+-+|
T Consensus 294 ~s~l~fw 300 (311)
T KOG1446|consen 294 SSNLVFW 300 (311)
T ss_pred CceEEEE
Confidence 4566666
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.1e-29 Score=252.80 Aligned_cols=294 Identities=16% Similarity=0.228 Sum_probs=230.2
Q ss_pred cccCceEEEEEecCCCcEEEEEe--CCceEEEEEcCCCC----CcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSA--LDGVIRLWQLQSRG----SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT 294 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~--~dg~v~iw~~~~~~----~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~ 294 (540)
.+...|.+++.+|| +..+|||+ .||.++||+...-- ..........+....|.+.|+|+.|+|||.+||+|
T Consensus 11 H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG-- 87 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG-- 87 (942)
T ss_pred cCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec--
Confidence 34567999999996 99999999 99999999875321 11111122223336899999999999999999999
Q ss_pred cCCCCCeEEEEecCCC---------------CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC
Q 009203 295 ADSGDSQISVLNLNKT---------------KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA 359 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~---------------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 359 (540)
+.|+.|.||+.... ..-+++..+.+ |.+.|..++|+| ++.+|++++.|++|.||+..+.
T Consensus 88 --SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~---H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 88 --SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG---HDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred --cCcceEEEeeecccCCcccccccccccccceeeEEEEEec---CCCccceeccCC-CccEEEEecccceEEEEccccc
Confidence 99999999998831 00124455554 788899999999 9999999999999999999998
Q ss_pred CCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-------eccCccEEEEeecCCCCCceE
Q 009203 360 EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-------HQIESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 360 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 432 (540)
+. ...+ .+|.+.|..+.|.|-|++|++-+.|++|++|++.+-..... .........+.|+|++ .+
T Consensus 162 ~~---~~vl--~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG---~~ 233 (942)
T KOG0973|consen 162 EL---LKVL--RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG---HH 233 (942)
T ss_pred ee---eeee--ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc---Ce
Confidence 64 3333 56999999999999999999999999999999766333221 2334667889999999 67
Q ss_pred EEEEc----CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC-----CC------------EEEEEeCCCcE
Q 009203 433 VQTGT----PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-----GL------------YITSGSADPVI 491 (540)
Q Consensus 433 l~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~------------~l~sg~~dg~i 491 (540)
|++.. .-.++.|.+-.+..... .+-||..++.++.|+|. .. .+|+|+.|++|
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~-------~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl 306 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDK-------DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL 306 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeee-------eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence 87753 23468888877666433 56789999999999982 11 67899999999
Q ss_pred EEEeccCCCCccccccc-ccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 492 HLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 492 ~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.||.... .+++.... --...|.+++|+|||..|+.||.||+|.+..+
T Consensus 307 SVW~T~~--~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 307 SVWNTAL--PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred EEEecCC--CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 9999976 56655443 33558999999999999999999999998764
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=217.63 Aligned_cols=272 Identities=16% Similarity=0.235 Sum_probs=214.4
Q ss_pred eEEecCCCCeEEEeccc-----------------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC
Q 009203 200 LVRTSASPATIHCHTSN-----------------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR 256 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----------------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~ 256 (540)
.+++++.|..|++.+.+ ++|-.|.++|+++.|+| ...+|++|+.|++|+++|+...
T Consensus 126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~ 204 (430)
T KOG0640|consen 126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKT 204 (430)
T ss_pred EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhheEEeccCCCeEEEEecccH
Confidence 57888888888888653 24678999999999999 4999999999999999999875
Q ss_pred CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC
Q 009203 257 GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP 336 (540)
Q Consensus 257 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 336 (540)
...+.+... ....+|.++.|+|.|.+|++| ..-.++++||+++. +|...-.....|.+.|+++.+++
T Consensus 205 saKrA~K~~------qd~~~vrsiSfHPsGefllvg----TdHp~~rlYdv~T~---QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 205 SAKRAFKVF------QDTEPVRSISFHPSGEFLLVG----TDHPTLRLYDVNTY---QCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred HHHHHHHHh------hccceeeeEeecCCCceEEEe----cCCCceeEEeccce---eEeeecCcccccccceeEEEecC
Confidence 443333222 234679999999999999999 88999999999986 44444334446788999999999
Q ss_pred CCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCc
Q 009203 337 WENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIES 416 (540)
Q Consensus 337 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 416 (540)
++++.++|+.||.|++||--+++|+ ..+........|.+..|..+|+++++.+.|..+++|.+.+++.+..+...+
T Consensus 272 -t~~lYvTaSkDG~IklwDGVS~rCv---~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 272 -TGSLYVTASKDGAIKLWDGVSNRCV---RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred -CccEEEEeccCCcEEeeccccHHHH---HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 9999999999999999999998883 333322234689999999999999999999999999999999987654431
Q ss_pred ------cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCc
Q 009203 417 ------KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPV 490 (540)
Q Consensus 417 ------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~ 490 (540)
......|+.... ..|.---..+.+.-||.++...... ...+|.+.+..+.-||.+..+++++.|..
T Consensus 348 ~tgrq~~rtqAvFNhtEd--yVl~pDEas~slcsWdaRtadr~~l------~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 348 TTGRQKHRTQAVFNHTED--YVLFPDEASNSLCSWDARTADRVAL------LSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred cccchhhhhhhhhcCccc--eEEccccccCceeeccccchhhhhh------cccCCCCCceEEEeCCCCCceeeecccce
Confidence 222334443331 3344444557899999998765332 23589999999999999999999999999
Q ss_pred EEEEecc
Q 009203 491 IHLFDIR 497 (540)
Q Consensus 491 i~iwd~~ 497 (540)
+++|--.
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999654
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5e-29 Score=213.54 Aligned_cols=280 Identities=15% Similarity=0.252 Sum_probs=211.9
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
.-.+.|.+|+|||....+++.||.||+||+|+++.. ....+.. ..|.++|.+++|+.||..+++| +.|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~WsddgskVf~g----~~D 93 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSDDGSKVFSG----GCD 93 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEccCCceEEee----ccC
Confidence 445789999999965778889999999999999874 2222111 4788999999999999999999 999
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC--EEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP--CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
+.+++||+.+++ +..+. .|.++|.++.|-+ ... .|+||+.|.+|++||++....+... .-.+.+
T Consensus 94 k~~k~wDL~S~Q----~~~v~---~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~------~LPeRv 159 (347)
T KOG0647|consen 94 KQAKLWDLASGQ----VSQVA---AHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATL------QLPERV 159 (347)
T ss_pred CceEEEEccCCC----eeeee---ecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeee------ecccee
Confidence 999999999873 23333 3788999999987 554 8999999999999999987652222 234567
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee---eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc-e
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT-E 453 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~ 453 (540)
+++..- ..+++++..++.|.+|+++++...+. ....-...+++...+. ...+.|+-+|.+.+..+..+.. .
T Consensus 160 Ya~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~---~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 160 YAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK---DGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred eehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC---CceEeeeecceEEEEecCCCCccC
Confidence 776653 47888899999999999987655432 2334445555555544 2358899999999999987532 1
Q ss_pred eeeeccccc---cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE-
Q 009203 454 IHAFGWKQE---SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI- 529 (540)
Q Consensus 454 ~~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~- 529 (540)
...+.+... ..+.-..|++|+|+|....|++++.||++.+||-+. ...+.+...|..+|++..|+.+|.++|-+
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda--r~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA--RTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh--hhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 111211111 111134688899999999999999999999999997 67788888899999999999999987654
Q ss_pred EcC
Q 009203 530 SSD 532 (540)
Q Consensus 530 ~~d 532 (540)
|+|
T Consensus 313 gYD 315 (347)
T KOG0647|consen 313 GYD 315 (347)
T ss_pred ecc
Confidence 444
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.4e-28 Score=225.10 Aligned_cols=297 Identities=15% Similarity=0.155 Sum_probs=222.7
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------hh
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------HV 218 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~~ 218 (540)
..+++|+..|.++.+.|... -+.+++-|.+|++||.. .+
T Consensus 161 i~l~hgtk~Vsal~~Dp~Ga-------------------------------R~~sGs~Dy~v~~wDf~gMdas~~~fr~l 209 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGA-------------------------------RFVSGSLDYTVKFWDFQGMDASMRSFRQL 209 (641)
T ss_pred EeccCCceEEEEeeecCCCc-------------------------------eeeeccccceEEEEecccccccchhhhcc
Confidence 45567888888888887742 46788999999999875 33
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeec-----ccccCCCCCCCCceeEEEecCCC-eEEEE
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLS-----TTDCLSPKHRRWPEDIAWHPQGN-SLFSA 292 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~~~~~~~~~-~l~s~ 292 (540)
...-...|++++|++. |..|++.+.....+|+|-........... .... ..||...++|.+|+|+.+ .++++
T Consensus 210 ~P~E~h~i~sl~ys~T-g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n-TKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 210 QPCETHQINSLQYSVT-GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN-TKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred CcccccccceeeecCC-CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc-cCCceeeeeccccccCcccceEEe
Confidence 4455678999999995 67777777778899999765433222211 1111 169999999999999765 77888
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
+.||++++||++..+....+..-.......-+++.++|+| ++.+||+|..||.|.+|+...... .+.......
T Consensus 288 ----s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v--~p~~~vk~A 360 (641)
T KOG0772|consen 288 ----SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV--RPVMKVKDA 360 (641)
T ss_pred ----cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc--ccceEeeec
Confidence 9999999999987644333322222223456789999999 999999999999999999854331 233344466
Q ss_pred CCc--ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-eee---eccCccEEEEeecCCCCCceEEEEEcC------CC
Q 009203 373 HSS--AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DFK---HQIESKCMSVLPNPCDFNLFMVQTGTP------GR 440 (540)
Q Consensus 373 ~~~--~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg 440 (540)
|.. .|+||.||++|++|++-+.|+++++||+++.+. +.. .........++|+|+. .+|++|.. .|
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~---kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD---KLILTGTSAPNGMTAG 437 (641)
T ss_pred cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc---eEEEecccccCCCCCc
Confidence 877 999999999999999999999999999998544 332 2233455678899988 78888754 57
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
.+.+||..+....... .-....|..+.|+|.-+.|++|+.||.++||=
T Consensus 438 ~L~f~d~~t~d~v~ki-------~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKI-------DISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eEEEEeccceeeEEEe-------cCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 8999999887754432 12256789999999999999999999999874
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.4e-30 Score=228.24 Aligned_cols=259 Identities=18% Similarity=0.226 Sum_probs=213.7
Q ss_pred eEEecCCCCeEEEeccc-------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203 200 LVRTSASPATIHCHTSN-------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK 272 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 272 (540)
.++++..|..|++|+.. .+|.|-.++|+++.|.++ ++++++++.|+.+++|++...+...++ .|
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~TL--------sG 259 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRHTL--------SG 259 (459)
T ss_pred hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeeccchhhhhhh--------cc
Confidence 46788889999999543 568899999999999996 888999999999999999998877777 79
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
|.+.|+++.|......+++| +.|.+|++||+... .|.+..-. ...+..|..+ ...+++|..|+.|+
T Consensus 260 HtdkVt~ak~~~~~~~vVsg----s~DRtiK~WDl~k~---~C~kt~l~----~S~cnDI~~~---~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSG----SADRTIKLWDLQKA---YCSKTVLP----GSQCNDIVCS---ISDVISGHFDKKVR 325 (459)
T ss_pred cccceeeehhhccccceeec----cccchhhhhhhhhh---heeccccc----cccccceEec---ceeeeecccccceE
Confidence 99999999999877778998 99999999999974 44444321 3456777764 46789999999999
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-----cCccEEEEeecCCC
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-----IESKCMSVLPNPCD 427 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~ 427 (540)
+||.++..+ ...+ . -.+.|+++..+++|..|++++.|.++.++|+++......+. .......+.|+|++
T Consensus 326 fwD~Rs~~~---~~sv--~-~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 326 FWDIRSADK---TRSV--P-LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred EEeccCCce---eeEe--e-cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence 999999875 2222 2 33589999999999999999999999999999887765533 34557789999998
Q ss_pred CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
.|+++|+.||.|+||++.++++....- .......|++++|+|.|.+|++++.++.+.+|.
T Consensus 400 ---~YvaAGS~dgsv~iW~v~tgKlE~~l~-----~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 ---SYVAAGSADGSVYIWSVFTGKLEKVLS-----LSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ---ceeeeccCCCcEEEEEccCceEEEEec-----cCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 799999999999999999988655321 122223799999999999999999999999993
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.7e-29 Score=235.63 Aligned_cols=258 Identities=19% Similarity=0.309 Sum_probs=216.0
Q ss_pred CCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC-CCCCceeE
Q 009203 207 PATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK-HRRWPEDI 280 (540)
Q Consensus 207 d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~ 280 (540)
...+.+|+.. .+...+...|+++.|+++ |.+||+|..+|.|.|||....+.+..+ .+ |...|-++
T Consensus 196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~--------~~~h~~rvg~l 266 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTL--------RGSHASRVGSL 266 (484)
T ss_pred cceEEEEecCCCceEEeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccc--------cCCcCceeEEE
Confidence 5677888654 223444899999999995 999999999999999999988877766 34 89999999
Q ss_pred EEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC
Q 009203 281 AWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE 360 (540)
Q Consensus 281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 360 (540)
+|. +..+.+| +.++.|..+|++..+. .+..+. +|...|..++|++ ++.++++|+.|+.+.|||.....
T Consensus 267 aW~--~~~lssG----sr~~~I~~~dvR~~~~--~~~~~~---~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 267 AWN--SSVLSSG----SRDGKILNHDVRISQH--VVSTLQ---GHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred ecc--CceEEEe----cCCCcEEEEEEecchh--hhhhhh---cccceeeeeEECC-CCCeeccCCCccceEeccCCCcc
Confidence 998 5678888 9999999999997632 222233 4788899999999 99999999999999999996655
Q ss_pred CccccceeecccCCcceeEEEecc-CCCEEEEEe--CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc
Q 009203 361 DSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAG--ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
. .+....|...|.+++|+| ...+||+|+ .|++|++||..++..+........+.++.|++.... .....|.
T Consensus 335 p-----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kE-i~sthG~ 408 (484)
T KOG0305|consen 335 P-----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKE-LLSTHGY 408 (484)
T ss_pred c-----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCE-EEEecCC
Confidence 3 334456999999999999 567788865 499999999999999999999999999999997632 2344467
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.++.|.||+..+..... .+.+|...|..+++||||..+++|+.|.++++|++-.
T Consensus 409 s~n~i~lw~~ps~~~~~-------~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVA-------ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCcEEEEeccccceee-------eecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 78899999998865433 6679999999999999999999999999999999986
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-28 Score=221.38 Aligned_cols=289 Identities=14% Similarity=0.169 Sum_probs=229.2
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecc----------cccCCCCCCCCceeEEEecCCCe
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLST----------TDCLSPKHRRWPEDIAWHPQGNS 288 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~----------~~~~~~~h~~~V~~~~~~~~~~~ 288 (540)
+..|.-+|+||+++|| ..+.++++.||+|.=|++.+++...-+... ......+|...+.+++.++||++
T Consensus 138 ~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred eccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 3689999999999996 889999999999999999988744111111 11111378899999999999999
Q ss_pred EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203 289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL 368 (540)
Q Consensus 289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 368 (540)
|++| +.|..|.||+.++. ..++.+.+ |.+.|.+++|-. ....+++++.|++|++|+++.... ...+
T Consensus 217 latg----g~d~~v~Iw~~~t~---ehv~~~~g---hr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~---vetl 282 (479)
T KOG0299|consen 217 LATG----GRDRHVQIWDCDTL---EHVKVFKG---HRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSY---VETL 282 (479)
T ss_pred EEec----CCCceEEEecCccc---chhhcccc---cccceeeeeeec-CccceeeeecCCceEEEehhHhHH---HHHH
Confidence 9999 99999999999987 44555554 789999999988 778899999999999999988654 3333
Q ss_pred ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 369 HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 369 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
.+|.+.|.+|....-++.+-+|+.|+++++|++.....+......+.+-+++|-.+. .+++|+.+|.|.+|++-
T Consensus 283 --yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~----HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 283 --YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE----HFVSGSDNGSIALWSLL 356 (479)
T ss_pred --hCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc----ceeeccCCceEEEeeec
Confidence 569999999999888888888889999999999766655556666777788877664 89999999999999998
Q ss_pred CCcceeeeeccccccC-----ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEcC
Q 009203 449 LRQTEIHAFGWKQESS-----ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWHY 521 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s~ 521 (540)
..+............. .+..+|++++..|...++|+|+.+|.|++|.+..+. ..++..+. -.+.|++++|++
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSN 435 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEcc
Confidence 8775443321111111 223489999999999999999999999999998741 23444555 567899999999
Q ss_pred CCCEEEEE
Q 009203 522 SHPLLISI 529 (540)
Q Consensus 522 ~~~~l~s~ 529 (540)
+|+.|++|
T Consensus 436 sgk~ivag 443 (479)
T KOG0299|consen 436 SGKRIVAG 443 (479)
T ss_pred CCCEEEEe
Confidence 99966655
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=241.52 Aligned_cols=271 Identities=18% Similarity=0.242 Sum_probs=232.4
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcce-eecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGAS-LLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
|...+.|..|.. .++++++.|+++++|+...+..+.. + .||.+.|.+++|...+.+|++| +.|.
T Consensus 207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l--------~GH~g~V~~l~~~~~~~~lvsg----S~D~ 271 (537)
T KOG0274|consen 207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRL--------VGHFGGVWGLAFPSGGDKLVSG----STDK 271 (537)
T ss_pred Ccchhhhheeec---CeEEecCCCceeEEeecccceEEEeec--------cCCCCCceeEEEecCCCEEEEE----ecCC
Confidence 667899999984 3789999999999999998876555 4 6999999999998878899999 9999
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
++++||..++ .|...+.+ |.+.|.++...+ ..+++|+.|.+|++|++.++.+ ...+ .+|.++|.++
T Consensus 272 t~rvWd~~sg---~C~~~l~g---h~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~---l~l~--~~h~~~V~~v 337 (537)
T KOG0274|consen 272 TERVWDCSTG---ECTHSLQG---HTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC---LNLL--RGHTGPVNCV 337 (537)
T ss_pred cEEeEecCCC---cEEEEecC---CCceEEEEEccC---ceEeeccCCceEEEEeccCcce---EEEe--ccccccEEEE
Confidence 9999999987 78888886 678899998854 7788999999999999998875 3333 3499999999
Q ss_pred EeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC-cceeeeec
Q 009203 381 AGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR-QTEIHAFG 458 (540)
Q Consensus 381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~ 458 (540)
..+ +.++++|+.|++|++||+.+++++.... +...+.++.+.+. ..+++|+.|++|++||+++. ++.
T Consensus 338 ~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~----~~~~Sgs~D~~IkvWdl~~~~~c~----- 406 (537)
T KOG0274|consen 338 QLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE----NRLLSGSLDTTIKVWDLRTKRKCI----- 406 (537)
T ss_pred Eec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc----ceEEeeeeccceEeecCCchhhhh-----
Confidence 997 8999999999999999999999988754 4567778877774 28999999999999999988 442
Q ss_pred cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
..+.+|..-+..+.+ .+++|++++.|+.|++||... +.++.++.+ |.+.|+.+++. ...+++++.||.+++
T Consensus 407 --~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~--~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 407 --HTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE--GECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred --hhhcCCccccccccc--ccceeEeccccccEEEeeccc--CceeeeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence 266788888877766 688999999999999999998 788888888 67889999886 467899999999999
Q ss_pred EeC
Q 009203 538 HKI 540 (540)
Q Consensus 538 w~l 540 (540)
||+
T Consensus 479 ~dl 481 (537)
T KOG0274|consen 479 WDL 481 (537)
T ss_pred Eec
Confidence 996
No 80
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.1e-27 Score=235.86 Aligned_cols=277 Identities=15% Similarity=0.125 Sum_probs=197.6
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeec-----ccccCCCCCCCCceeEEEec-CCCeEEEEeecCC
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLS-----TTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADS 297 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~ 297 (540)
..|.....++| +..+++++.+..+..|+...+..+..+.. .......+|.+.|.+++|+| ++++|+++ +
T Consensus 21 ~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg----S 95 (493)
T PTZ00421 21 LNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA----S 95 (493)
T ss_pred eccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE----e
Confidence 45666666664 55567777777777777654432111110 00011258999999999999 88899999 9
Q ss_pred CCCeEEEEecCCCCC----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203 298 GDSQISVLNLNKTKG----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
.|++|++||+.++.. ...+..+.+ |...|.+++|+|..+++|++|+.|++|+|||+.+++. .. ...+|
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~g---H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~---~~--~l~~h 167 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQG---HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA---VE--VIKCH 167 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecC---CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE---EE--EEcCC
Confidence 999999999976421 123444554 6788999999994457999999999999999998764 22 23568
Q ss_pred CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEeecCCCCCceEEEEE---cCCCeEEEEECC
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLPNPCDFNLFMVQTG---TPGRQLRLYDIR 448 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~---~~dg~v~i~d~~ 448 (540)
...|.+++|+|+|.+|++++.|+.|++||+++++.+...... .....+.|.+.+. .++.+| +.|+.|++||++
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~--~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD--LIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC--eEEEEecCCCCCCeEEEEeCC
Confidence 899999999999999999999999999999998876654332 2234566777652 234444 357999999998
Q ss_pred CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcccccccc-cccceeEEEEcCC
Q 009203 449 LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYS 522 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~ 522 (540)
+......... ..+...+....|++++++|++|+ .|+.|++||+.+ +.++..... +..++.+++|.|.
T Consensus 246 ~~~~p~~~~~-----~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~--~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 246 KMASPYSTVD-----LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN--ERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceeEec-----cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC--CceEEEeeccCCCCCcceEeccc
Confidence 7664443221 12234566678999999999887 599999999997 555544432 4456788888874
No 81
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.2e-27 Score=224.78 Aligned_cols=378 Identities=18% Similarity=0.245 Sum_probs=262.7
Q ss_pred CCeeeecCCcceeeEEEEcccccccC-----CCCc--cEEEEeecCCCceEEecccccccceEEe-------cCCCCeEE
Q 009203 146 GSSTQASPAAHSIGIVKVKGEKSHRN-----SSDS--EIVEVRDRGTKRKFEQKEHRELIPLVRT-------SASPATIH 211 (540)
Q Consensus 146 ~~~~~~~~h~~~v~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~d~~i~ 211 (540)
...+.+.||..+|+|+.+-|.....+ +.|. .++++.+......+.+.+|..-+.++.- ...|+++.
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVS 124 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEE
Confidence 34567789999999999998877333 4455 3443443444444444555544433221 13456666
Q ss_pred Eecc------------------------------------------------c-------hhcccccCceEEEEEecCCC
Q 009203 212 CHTS------------------------------------------------N-------HVSSLHKRKLRSLSLNPVNE 236 (540)
Q Consensus 212 ~~~~------------------------------------------------~-------~~~~~h~~~V~~l~~spd~~ 236 (540)
+|+. . ..+.||.+.|.+++|...++
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 6633 1 22689999999999986533
Q ss_pred --cEEEEEeCCceEEEEEcCCCCCcc-----------------------eeecccccCCCCCCCCceeEEEecCCCeEEE
Q 009203 237 --QLFVTSALDGVIRLWQLQSRGSGA-----------------------SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFS 291 (540)
Q Consensus 237 --~~l~tg~~dg~v~iw~~~~~~~~~-----------------------~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s 291 (540)
.+||++|.|..||||.+.-..... .+....+....||.++|.++.|+|.+..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 489999999999999875433111 1222333444699999999999999988999
Q ss_pred EeecCCCCCeEEEEecCCCCCceeE-EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 292 AHTADSGDSQISVLNLNKTKGRACV-TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
+ +.|.++.+|...+..+.... -.+....+..+..++.-|+| +++.+++-+.-|..++|...... .|. +....
T Consensus 285 A----SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~-~w~-~~~~i 357 (764)
T KOG1063|consen 285 A----SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKT-FWT-QEPVI 357 (764)
T ss_pred c----ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCcc-cee-ecccc
Confidence 9 99999999988765432222 22233233345588999999 99999999999999999933322 121 22233
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee-------eeecc-----------------------------
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD-------FKHQI----------------------------- 414 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~----------------------------- 414 (540)
.+|.+.|.+++|.|.|.+|++.+.|.+-|+|-.-..+.. +.|..
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 679999999999999999999999988777654310000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 009203 415 -------------------------------------------------------------------------------- 414 (540)
Q Consensus 415 -------------------------------------------------------------------------------- 414 (540)
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence
Q ss_pred -------CccEEEEeecCCCCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203 415 -------ESKCMSVLPNPCDFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI 482 (540)
Q Consensus 415 -------~~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 482 (540)
+..+.+++.+|.+ .++++++.. ..|++|+..+..... .+.+|.-.|+.++|||||++|
T Consensus 518 v~KLYGHGyEv~~l~~s~~g---nliASaCKS~~~ehAvI~lw~t~~W~~~~-------~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTG---NLIASACKSSLKEHAVIRLWNTANWLQVQ-------ELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred hHHhccCceeEEEEEecCCC---CEEeehhhhCCccceEEEEEeccchhhhh-------eecccceEEEEEEECCCCcEE
Confidence 1122333333333 466666543 248889888766432 567899999999999999999
Q ss_pred EEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 483 TSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 483 ~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++.+.|.++.+|...... .......+.|..-|++..|+|++.+++|+|.|.+|+||.+
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 999999999999986521 1123346789999999999999999999999999999974
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.4e-28 Score=206.61 Aligned_cols=241 Identities=20% Similarity=0.220 Sum_probs=203.5
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA 350 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 350 (540)
.+|...|.+++|+.+|..|+++ +.|+++.+|++... .....+... .|.+.|-.++|+|...++|++++.|.+
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasg----s~dktv~v~n~e~~---r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASG----SFDKTVSVWNLERD---RFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred hhhhhcceEEEEcccCceeeec----ccCCceEEEEecch---hhhhhhccc-CCCcchhhheeCCCCCcceEEecCCce
Confidence 5788999999999999999999 99999999999865 223333333 356679999999989999999999999
Q ss_pred EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203 351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (540)
|++||++.+++ ...+. ..+.-.-+.|+|+|.++++++.|..|.+.|.++.+.+...+....+..+.|+-++
T Consensus 89 ir~wd~r~~k~---~~~i~---~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n--- 159 (313)
T KOG1407|consen 89 IRIWDIRSGKC---TARIE---TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN--- 159 (313)
T ss_pred EEEEEeccCcE---EEEee---ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC---
Confidence 99999999986 22222 2334456889999999999999999999999999888888877788888888544
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
.+++.....|+|.|......+. ...++.|.....||.|+|+|+++|+|+.|-.+.+||++. ..+++.+..+
T Consensus 160 d~Fflt~GlG~v~ILsypsLkp-------v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E--LiC~R~isRl 230 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKP-------VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE--LICERCISRL 230 (313)
T ss_pred CEEEEecCCceEEEEecccccc-------ccccccCCcceEEEEECCCCceEeeccccceeeccChhH--hhhheeeccc
Confidence 3555556679999988875443 336788999999999999999999999999999999997 7888999999
Q ss_pred ccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 511 QKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
.-+|..+.|+.||++||+||+|..|-|
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEe
Confidence 999999999999999999999988765
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.9e-28 Score=209.24 Aligned_cols=275 Identities=16% Similarity=0.194 Sum_probs=218.8
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcC------CCCC----------
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ------SRGS---------- 258 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~------~~~~---------- 258 (540)
.+.+++.|.+.++|..+ ..+.||.+.|+|+.|++ .+.++++++.|++..||... ....
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 46788899999999765 34789999999999999 59999999999999999721 1000
Q ss_pred ------c-----------ceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecC
Q 009203 259 ------G-----------ASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD 321 (540)
Q Consensus 259 ------~-----------~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 321 (540)
. .++... .+...||...|.++.|...|+.++++ +.|.+-.+||++++ ..+..+.+
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvP-l~~ltgH~~vV~a~dWL~gg~Q~vTa----SWDRTAnlwDVEtg---e~v~~LtG 312 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVP-LMRLTGHRAVVSACDWLAGGQQMVTA----SWDRTANLWDVETG---EVVNILTG 312 (481)
T ss_pred hcccccccccccccccCCceeeee-eeeeeccccceEehhhhcCcceeeee----eccccceeeeeccC---ceeccccC
Confidence 0 011111 11225899999999999999999999 99999999999997 66888876
Q ss_pred CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEE
Q 009203 322 KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF 401 (540)
Q Consensus 322 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iw 401 (540)
|....+.++-+| +..++++.+.|.+.++||++..- . .....++|...|+++.|.- +..+++|+.|.+|++|
T Consensus 313 ---Hd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI--~--sV~VFQGHtdtVTS~vF~~-dd~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 313 ---HDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI--Q--SVAVFQGHTDTVTSVVFNT-DDRVVSGSDDRTVKVW 383 (481)
T ss_pred ---cchhccccccCC-cceEEEEeccCceeEeccchhhc--c--eeeeecccccceeEEEEec-CCceeecCCCceEEEe
Confidence 667799999999 99999999999999999999543 2 2333478999999999986 4668999999999999
Q ss_pred ECCCCC-eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-
Q 009203 402 DAGVGR-ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG- 479 (540)
Q Consensus 402 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g- 479 (540)
|+++.. ++........+..+..+... .+++.-..+..|++||++........ ...-.+|..-|+|++|..+.
T Consensus 384 dLrNMRsplATIRtdS~~NRvavs~g~---~iIAiPhDNRqvRlfDlnG~RlaRlP---rtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 384 DLRNMRSPLATIRTDSPANRVAVSKGH---PIIAIPHDNRQVRLFDLNGNRLARLP---RTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred eeccccCcceeeecCCccceeEeecCC---ceEEeccCCceEEEEecCCCccccCC---cccccccceeeeeeeccccCc
Confidence 999754 46667777778877777655 58888888999999999865532221 11346899999999998654
Q ss_pred -CEEEEEeCCCcEEEEeccC
Q 009203 480 -LYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 480 -~~l~sg~~dg~i~iwd~~~ 498 (540)
.-|++++.|..+.-|++..
T Consensus 458 ~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccccccccccceeeeeEecc
Confidence 3488899999999999986
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.3e-29 Score=207.79 Aligned_cols=243 Identities=17% Similarity=0.274 Sum_probs=198.7
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-cceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCC
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDS 300 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~ 300 (540)
.+.+..|+|++.....+++++.||+++|||...... +..+ ..|...|.++.|++. +..++++ +.|+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~--------kEH~~EV~Svdwn~~~r~~~lts----SWD~ 127 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKF--------KEHKREVYSVDWNTVRRRIFLTS----SWDG 127 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHH--------HhhhhheEEeccccccceeEEee----ccCC
Confidence 368999999998788999999999999999654332 1111 579999999999985 4466777 9999
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
+|++|+...+ ..+.++.+ |...|...+|+|..++++++++.|+++++||++.... ... ...|...|.++
T Consensus 128 TiKLW~~~r~---~Sv~Tf~g---h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~--i~ah~~Eil~c 196 (311)
T KOG0277|consen 128 TIKLWDPNRP---NSVQTFNG---HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMS--IEAHNSEILCC 196 (311)
T ss_pred ceEeecCCCC---cceEeecC---CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeE--EEeccceeEee
Confidence 9999999876 44777776 6788999999999999999999999999999987642 233 45699999999
Q ss_pred Eecc-CCCEEEEEeCCCeEEEEECCCCCe-eee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 381 AGMQ-QKQIVLSAGADKRIIGFDAGVGRA-DFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 381 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
.|+. +.+.+++|+.|+.|+.||+++-+. +.. ..++-.+..+.|+|... .+|++++.|-+++|||.........
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--~lLaSasYDmT~riw~~~~~ds~~e-- 272 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--SLLASASYDMTVRIWDPERQDSAIE-- 272 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--hHhhhccccceEEecccccchhhhh--
Confidence 9987 678899999999999999998543 333 34456778899999765 4899999999999999986554332
Q ss_pred ccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 009203 458 GWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDI 496 (540)
Q Consensus 458 ~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~ 496 (540)
+..-|..-|..+.||+ ++.++|+.+.|+.++||+.
T Consensus 273 ----~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 ----TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ----hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 3456888899999998 6789999999999999984
No 85
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=9.7e-29 Score=225.30 Aligned_cols=289 Identities=14% Similarity=0.240 Sum_probs=238.2
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
...|..-|.++.+|.. .+++.||+ .|.|+|||+..... +......+|. .....|.++...|||+.|++| +.
T Consensus 415 tL~HGEvVcAvtIS~~-trhVyTgG-kgcVKVWdis~pg~-k~PvsqLdcl--~rdnyiRSckL~pdgrtLivG----Ge 485 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISQPGN-KSPVSQLDCL--NRDNYIRSCKLLPDGRTLIVG----GE 485 (705)
T ss_pred hhccCcEEEEEEecCC-cceeEecC-CCeEEEeeccCCCC-CCcccccccc--CcccceeeeEecCCCceEEec----cc
Confidence 3578888999999985 88899987 47899999976532 3333344443 345779999999999999999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
-.++.|||+......... .+.. ..-.+.+++.+| |.+..+++..||.|.|||+.+... +-...+|.+.+.
T Consensus 486 astlsiWDLAapTprika-elts---sapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~-----VrqfqGhtDGas 555 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKA-ELTS---SAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTL-----VRQFQGHTDGAS 555 (705)
T ss_pred cceeeeeeccCCCcchhh-hcCC---cchhhhhhhcCC-ccceeeeeccCCcEEEEEccccee-----eecccCCCCCce
Confidence 999999999876331111 1111 123477899999 999999999999999999998764 333477999999
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 458 (540)
||..++||..|.+|+-|.+||.||++.++.+..+.....+.++..+|.+ .+++.|-.++.+.|......+..
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~---dWlavGMens~vevlh~skp~ky----- 627 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTG---DWLAVGMENSNVEVLHTSKPEKY----- 627 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCc---cceeeecccCcEEEEecCCccce-----
Confidence 9999999999999999999999999999999999999999999999988 69999999999998887755432
Q ss_pred cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
.+.-|.+.|.++.|.+.|+++++.+.|+.+..|.+.. +..+...+ ...+|.++..+-|.++||||+.|....||
T Consensus 628 ---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy--GasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 628 ---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--GASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ---eecccccEEEEEEecccCceeeecCchhhhhhccCcc--ccceeecc-ccCcceeeeeccCceEEEecCCCcceEEE
Confidence 2345888999999999999999999999999999887 56565555 35589999999999999999999988888
Q ss_pred eC
Q 009203 539 KI 540 (540)
Q Consensus 539 ~l 540 (540)
.+
T Consensus 702 eV 703 (705)
T KOG0639|consen 702 EV 703 (705)
T ss_pred EE
Confidence 64
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.5e-27 Score=191.98 Aligned_cols=297 Identities=20% Similarity=0.239 Sum_probs=223.0
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcc------eee-cccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGA------SLL-STTDCLSPKHRRWPEDIAWHPQGNSLFSAHT 294 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~------~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~ 294 (540)
.+..|.+++|+| .|.+.+.|+...+++|.....--.++ ... ...-.....|.+.|.|.+|+|+|.+|++|
T Consensus 31 dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg-- 107 (350)
T KOG0641|consen 31 DSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG-- 107 (350)
T ss_pred chhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec--
Confidence 346799999999 59999999999999987553211110 000 00001114688999999999999999999
Q ss_pred cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC---CCCEEEEEe-cCCcEEEEecCCCCCccccceeec
Q 009203 295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW---ENPCFATGG-SDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
+.|.+|++.-++.......-..++. .-|.+.|..++|..+ .+.+|++++ .|..|++-|-.+++. +..+
T Consensus 108 --sndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~---~~a~-- 179 (350)
T KOG0641|consen 108 --SNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG---FHAL-- 179 (350)
T ss_pred --CCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc---ceee--
Confidence 9999999987664311110011111 136788999999741 345667665 466777778888775 3444
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc--------CccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI--------ESKCMSVLPNPCDFNLFMVQTGTPGRQL 442 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~dg~v 442 (540)
.+|++.|.++. +=+|-++++|+.|.+|++||++-..++..... ...+.+++.+|.+ ++|++|..|...
T Consensus 180 sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg---rll~sg~~dssc 255 (350)
T KOG0641|consen 180 SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG---RLLASGHADSSC 255 (350)
T ss_pred cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc---ceeeeccCCCce
Confidence 56999998874 23589999999999999999998877654322 2567788889988 899999999999
Q ss_pred EEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEc
Q 009203 443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWH 520 (540)
Q Consensus 443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s 520 (540)
.+||++.+.... .+..|...|.++.|||...|+++++.|..|++-|++..- .-++.....|...+..+.|+
T Consensus 256 ~lydirg~r~iq-------~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 256 MLYDIRGGRMIQ-------RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred EEEEeeCCceee-------eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 999999887544 446789999999999999999999999999999998411 11333445799999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeC
Q 009203 521 YSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 521 ~~~~~l~s~~~dg~v~iw~l 540 (540)
|..-.+++.+.|.++.+|-+
T Consensus 329 ~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWAL 348 (350)
T ss_pred CccceeeeccCcceEEEecc
Confidence 99999999999999999965
No 87
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.7e-27 Score=203.85 Aligned_cols=273 Identities=15% Similarity=0.188 Sum_probs=211.8
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
-.+.|+.|.|+|. +..|+.+++||++++|++........+ .|..++.+++|.+ ...+++| +.||.
T Consensus 12 P~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~---------~~~~plL~c~F~d-~~~~~~G----~~dg~ 76 (323)
T KOG1036|consen 12 PEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKF---------KHGAPLLDCAFAD-ESTIVTG----GLDGQ 76 (323)
T ss_pred ChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhhe---------ecCCceeeeeccC-CceEEEe----ccCce
Confidence 3578999999994 777888889999999999987544433 6889999999987 4577888 99999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
|+.+|++++.. . .+. .|...|.||.+++ ....+++|+.|++|++||.+.... ... ......|.++.
T Consensus 77 vr~~Dln~~~~---~-~ig---th~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~---~~~---~d~~kkVy~~~ 142 (323)
T KOG1036|consen 77 VRRYDLNTGNE---D-QIG---THDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVV---VGT---FDQGKKVYCMD 142 (323)
T ss_pred EEEEEecCCcc---e-eec---cCCCceEEEEeec-cCCeEEEcccCccEEEEecccccc---ccc---cccCceEEEEe
Confidence 99999998733 2 222 3678899999999 788899999999999999997443 111 12345788888
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeee---eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc---eee
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADF---KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT---EIH 455 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~ 455 (540)
.+ |+.|++|+.|..+.+||+++..... .......+.+++..|.. .-+++++-||.|.+=.++.... ...
T Consensus 143 v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~---eGy~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 143 VS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG---EGYVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred cc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC---CceEEEeecceEEEEccCCchHHhhhce
Confidence 75 7889999999999999999876644 34556677788888844 3477889999998866665421 111
Q ss_pred eecccccc---CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 456 AFGWKQES---SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 456 ~~~~~~~~---~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
.|...... ..--.+|++++|+|-...||||+.||.|.+||+.+ .+.+..+......|.+++|+.||..||.++
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~--rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN--RKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc--hhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 11111111 11234899999999999999999999999999998 788888887778899999999999999886
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=9.7e-28 Score=236.35 Aligned_cols=262 Identities=18% Similarity=0.257 Sum_probs=218.5
Q ss_pred eEEecCCCCeEEEeccc-----hh-cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HV-SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~-~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
.+.+++.+.++.+|+.. .. +.||.+.|++++|.. ++.+|++|+.|.++++||..++++...+ .||
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l--------~gh 290 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSL--------QGH 290 (537)
T ss_pred eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEe--------cCC
Confidence 36678899999999765 33 789999999999997 6889999999999999999999998888 689
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
...|.++... +..+++| +.|.+|++|++.++ .++..+.+ |.++|.++.. ++.++++|+.|++|++
T Consensus 291 ~stv~~~~~~--~~~~~sg----s~D~tVkVW~v~n~---~~l~l~~~---h~~~V~~v~~---~~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 291 TSSVRCLTID--PFLLVSG----SRDNTVKVWDVTNG---ACLNLLRG---HTGPVNCVQL---DEPLLVSGSYDGTVKV 355 (537)
T ss_pred CceEEEEEcc--CceEeec----cCCceEEEEeccCc---ceEEEecc---ccccEEEEEe---cCCEEEEEecCceEEE
Confidence 9999888775 4577777 99999999999976 77888876 7889999999 4689999999999999
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC-CeeeeeccCccEE-EEeecCCCCCce
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG-RADFKHQIESKCM-SVLPNPCDFNLF 431 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~ 431 (540)
||+.++++ ...+ .+|...|.++.+.+. ..+++|+.|+.|++||+++. +++.......... .+.+.. .
T Consensus 356 W~~~~~~c---l~sl--~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~-----~ 424 (537)
T KOG0274|consen 356 WDPRTGKC---LKSL--SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD-----N 424 (537)
T ss_pred EEhhhcee---eeee--cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc-----c
Confidence 99999887 3444 559999999988654 89999999999999999999 7777655544333 333332 5
Q ss_pred EEEEEcCCCeEEEEECCCCcceeeeeccccccCc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc
Q 009203 432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE-SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 507 (540)
+|++++.|++|++||..++++.... .+ |...|+.+++. ...+++++.||.+.+||+.+ +.+...+
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~-------~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~--~~~~~~l 490 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEGECLRTL-------EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS--GTLIRTL 490 (537)
T ss_pred eeEeccccccEEEeecccCceeeee-------ccCCcccEEEeecC--cceEEEEecCCeeEEEeccc--Cchhhhh
Confidence 8999999999999999998875532 33 66788888875 46788889999999999998 6666655
No 89
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.5e-27 Score=203.56 Aligned_cols=296 Identities=13% Similarity=0.151 Sum_probs=209.4
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcce-eecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGAS-LLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
+|+||.+.|++|+|+.| |+.|||++.|++|+||++.+-..... .... . -.-+..+.++|.||-+-++...
T Consensus 81 ~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~--n---ve~dhpT~V~FapDc~s~vv~~--- 151 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQ--N---VEYDHPTRVVFAPDCKSVVVSV--- 151 (420)
T ss_pred hhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhc--c---ccCCCceEEEECCCcceEEEEE---
Confidence 57999999999999996 99999999999999999976332111 1000 0 1112357899999987554442
Q ss_pred CCCCeEEEEecCCCCC---ceeEEee---cCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 297 SGDSQISVLNLNKTKG---RACVTFL---DDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~---~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
-...++++|.+..... ....... ..+..|...+..+-... ++.+|++++.|..|.+|++. |+. +..+.
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~---L~~id- 225 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQL---LQSID- 225 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cce---eeeec-
Confidence 5677899997753221 1111111 12224566677777777 88999999999999999999 554 23332
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC---CCCe------eeeeccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG---VGRA------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ 441 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 441 (540)
.....-+..+.||+|+++++++-.-.|++|.+- .|.. .....+...+.+++|+++. ..+++.+.||+
T Consensus 226 -tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S---~r~vtvSkDG~ 301 (420)
T KOG2096|consen 226 -TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS---TRAVTVSKDGK 301 (420)
T ss_pred -cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc---ceeEEEecCCc
Confidence 234455677899999999999999999999863 2222 1223456788899999988 78999999999
Q ss_pred EEEEECCCCcc------eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-ccccce
Q 009203 442 LRLYDIRLRQT------EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-AHQKRV 514 (540)
Q Consensus 442 v~i~d~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~i 514 (540)
+++||.+-.-. .+... ...+....+....+.++|.|..||.+. ...+.+|..+. ++....+. .|...|
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g--~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~--g~~~~~~e~~h~~~I 376 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEG--SAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASED--GKDYPELEDIHSTTI 376 (420)
T ss_pred EEEeeccceEecCCCchHhhcC--CcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEccc--CccchhHHHhhcCce
Confidence 99999873211 11111 012223344556899999999998774 46699999988 55554443 689999
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 515 FKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
.+++|+++|++++++| |..+++.
T Consensus 377 s~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 377 SSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred eeEEecCCCcEEeeec-ceeeeee
Confidence 9999999999999987 7777775
No 90
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.8e-27 Score=232.19 Aligned_cols=252 Identities=15% Similarity=0.142 Sum_probs=182.3
Q ss_pred EeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCc-----ee
Q 009203 242 SALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGR-----AC 315 (540)
Q Consensus 242 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~-----~~ 315 (540)
|+.++.|++|+......+..+ .+|.+.|.+++|+|+ +.+|++| +.|+.|++||+.++... ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L--------~gH~~~V~~lafsP~~~~lLASg----S~DgtIrIWDi~t~~~~~~~i~~p 117 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL--------KGHTSSILDLQFNPCFSEILASG----SEDLTIRVWEIPHNDESVKEIKDP 117 (568)
T ss_pred CCceeEEEeeecCCCceEEEE--------cCCCCCEEEEEEcCCCCCEEEEE----eCCCeEEEEECCCCCccccccccc
Confidence 667899999998765443333 589999999999997 7899999 99999999999864210 12
Q ss_pred EEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203 316 VTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA 394 (540)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 394 (540)
+..+. .|...|.+++|+| ++. +|++++.|++|+|||+++++.. ..+ .|...|.+++|+|+|.+|++++.
T Consensus 118 ~~~L~---gH~~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~---~~i---~~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 118 QCILK---GHKKKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRA---FQI---NMPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred eEEee---cCCCcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCcEE---EEE---ecCCcEEEEEECCCCCEEEEEec
Confidence 22344 3678899999999 665 4679999999999999988642 122 25578999999999999999999
Q ss_pred CCeEEEEECCCCCeeeeeccC-ccEE--EE---eecCCCCCceEEEEEcCCC----eEEEEECCCCcceeeeeccccccC
Q 009203 395 DKRIIGFDAGVGRADFKHQIE-SKCM--SV---LPNPCDFNLFMVQTGTPGR----QLRLYDIRLRQTEIHAFGWKQESS 464 (540)
Q Consensus 395 dg~i~iwd~~~~~~~~~~~~~-~~~~--~~---~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~~~ 464 (540)
|+.|++||++++..+.....+ +.+. .+ .+++++ .++++++.++ +|+|||++....++... .+.
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~---~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~----~ld 260 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD---NYILSTGFSKNNMREMKLWDLKNTTSALVTM----SID 260 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC---CEEEEEEcCCCCccEEEEEECCCCCCceEEE----Eec
Confidence 999999999999887654332 2221 11 233544 4677766553 79999999755444332 222
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203 465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH 523 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~ 523 (540)
.+.+.+......++|.++++|+.|+.|++|++..+....+..+. +..++.+++|.|..
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 33344444444556899999999999999999864222333333 56788899999864
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.9e-28 Score=220.41 Aligned_cols=260 Identities=18% Similarity=0.297 Sum_probs=201.2
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceee--cccccCCCCCCCCceeEEEecCCC-eEEEEeecCC
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLL--STTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADS 297 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~--~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~ 297 (540)
-|.+.|+.+.+-|++..++|+++..+.|.|||..+........ ........||.+.=.+++|++... .|+++ +
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~----~ 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG----S 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec----c
Confidence 6889999999999988999999999999999998755433221 111112258888778899998654 78888 9
Q ss_pred CCCeEEEEecCCCCC----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203 298 GDSQISVLNLNKTKG----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
.|+.|++||+..... ......+. .|.+.|..++|++.+..+|++++.|+.+.|||++++.. .......+|
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~---~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~---~~~~~~~ah 271 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFS---GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS---KPSHSVKAH 271 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEee---cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC---CCccccccc
Confidence 999999999986543 12233444 37889999999998899999999999999999996321 223334679
Q ss_pred CcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 374 SSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 374 ~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
.+.|+|++|+| ++..||+|+.|++|++||+|+.. .
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------------------------------------------~ 307 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------------------------------------------K 307 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------------------------------------------c
Confidence 99999999998 45566677777777777777432 1
Q ss_pred eeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCC------------cccccccccccceeEEEE
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIRYSAN------------KPSQSIRAHQKRVFKAVW 519 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~------------~~~~~~~~h~~~i~~l~~ 519 (540)
.++ .+.+|...|.+|.|||+ ...||+++.|+.+.|||+..-.. +++..-.||.+.|..+.|
T Consensus 308 ~lh------~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW 381 (422)
T KOG0264|consen 308 PLH------TFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW 381 (422)
T ss_pred Cce------eccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence 222 45678999999999995 56789999999999999975211 234566789999999999
Q ss_pred cCCCC-EEEEEEcCCcEEEEeC
Q 009203 520 HYSHP-LLISISSDLNIGLHKI 540 (540)
Q Consensus 520 s~~~~-~l~s~~~dg~v~iw~l 540 (540)
+|... .|+|++.|+.+.||++
T Consensus 382 np~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 382 NPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCCCCeEEEEecCCceEEEeec
Confidence 99987 5788999999999974
No 92
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.3e-27 Score=234.48 Aligned_cols=253 Identities=15% Similarity=0.199 Sum_probs=182.5
Q ss_pred EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-cceeecccccCCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLSPKHR 274 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~h~ 274 (540)
+..++.++.+++|+.. ..+.+|.+.|.+++|+|+++.+||+|+.||+|+|||+.++.. ...+. .......+|.
T Consensus 47 ~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-~p~~~L~gH~ 125 (568)
T PTZ00420 47 VEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-DPQCILKGHK 125 (568)
T ss_pred cCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-cceEEeecCC
Confidence 3456678889999643 457899999999999996578999999999999999986432 11110 0001125899
Q ss_pred CCceeEEEecCCCe-EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 275 RWPEDIAWHPQGNS-LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 275 ~~V~~~~~~~~~~~-l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
..|.+++|+|++.. |+++ +.|++|++||+.++. ....+. +...|.+++|+| +|.+|++++.|+.|+|
T Consensus 126 ~~V~sVaf~P~g~~iLaSg----S~DgtIrIWDl~tg~---~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~IrI 193 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSS----GFDSFVNIWDIENEK---RAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKHMHI 193 (568)
T ss_pred CcEEEEEECCCCCeEEEEE----eCCCeEEEEECCCCc---EEEEEe----cCCcEEEEEECC-CCCEEEEEecCCEEEE
Confidence 99999999999875 4687 899999999999863 233332 235699999999 9999999999999999
Q ss_pred EecCCCCCccccceeecccCCcceeE-----EEeccCCCEEEEEeCCC----eEEEEECCC-CCeeeeeccCccEEE--E
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMG-----VAGMQQKQIVLSAGADK----RIIGFDAGV-GRADFKHQIESKCMS--V 421 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~-----l~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~--~ 421 (540)
||++++.. ... ..+|.+.+.+ ..|++++.+|++++.|+ .|+|||+++ +.++.....+..... .
T Consensus 194 wD~Rsg~~---i~t--l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p 268 (568)
T PTZ00420 194 IDPRKQEI---ASS--FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP 268 (568)
T ss_pred EECCCCcE---EEE--EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE
Confidence 99999874 222 2457665433 33568889999988774 799999995 555544443333222 2
Q ss_pred eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203 422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG 479 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 479 (540)
.++++ .+.++++|+.|+.|++|++..+. ...+. . -.+..++.+++|.|+.
T Consensus 269 ~~D~~--tg~l~lsGkGD~tIr~~e~~~~~--~~~l~---~-~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 269 HYDES--TGLIYLIGKGDGNCRYYQHSLGS--IRKVN---E-YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eeeCC--CCCEEEEEECCCeEEEEEccCCc--EEeec---c-cccCCCccceEEcccc
Confidence 33333 23688999999999999998653 22221 1 1255678889999964
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=9.1e-28 Score=227.69 Aligned_cols=311 Identities=20% Similarity=0.256 Sum_probs=239.2
Q ss_pred CCCeEEEeccc--------hhcccccCceEEEEEecC----------CCcEEEEEeCCceEEEEEcCCCCCcceeeccc-
Q 009203 206 SPATIHCHTSN--------HVSSLHKRKLRSLSLNPV----------NEQLFVTSALDGVIRLWQLQSRGSGASLLSTT- 266 (540)
Q Consensus 206 ~d~~i~~~~~~--------~~~~~h~~~V~~l~~spd----------~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~- 266 (540)
+|..+.+||.. +.+.-|...|+.+.--|- -...+.|++.|++||+|++..+..-..+....
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 47888899765 335678889998886551 02358999999999999998633211111000
Q ss_pred ----------------------------ccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEe
Q 009203 267 ----------------------------DCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTF 318 (540)
Q Consensus 267 ----------------------------~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~ 318 (540)
.....+....+.+++.+|+|++||+| ...|.++||++..- .....
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsG----Dr~GnlrVy~Lq~l---~~~~~ 496 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASG----DRGGNLRVYDLQEL---EYTCF 496 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceeccc----CccCceEEEEehhh---hhhhh
Confidence 00001234568999999999999999 99999999999864 33444
Q ss_pred ecCCCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC--CEEEEEeC
Q 009203 319 LDDKPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK--QIVLSAGA 394 (540)
Q Consensus 319 ~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~~~ 394 (540)
++. |...|.|+.|+-. ...+|++++.|..|+|||+...-. ......+|...|+++.|.-+| ..+++++.
T Consensus 497 ~eA---HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~----l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 497 MEA---HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD----LVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred eec---ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc----hhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 554 7889999999832 356899999999999999986542 222336799999999997766 67889999
Q ss_pred CCeEEEEECCC----CCeeeee---ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203 395 DKRIIGFDAGV----GRADFKH---QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ 467 (540)
Q Consensus 395 dg~i~iwd~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 467 (540)
|..|. |+... |.....+ ........+...|.. .++++++.|..|+|||+.+++....+. ...+|.
T Consensus 570 Dksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~---k~v~t~cQDrnirif~i~sgKq~k~FK----gs~~~e 641 (1080)
T KOG1408|consen 570 DKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS---KLVVTVCQDRNIRIFDIESGKQVKSFK----GSRDHE 641 (1080)
T ss_pred chhhh-eehhccccCceeccccccccccceEEEeeeCCCc---ceEEEEecccceEEEeccccceeeeec----ccccCC
Confidence 98765 44332 2222211 123566778888876 799999999999999999988654332 335678
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 468 SALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 468 ~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+....+..+|.|.|||+...|.++.+||+.+ ++++..+.+|...|+.+.|.+|-+.|++.+.||+|.||.+
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~s--gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVS--GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEecc--chhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 8899999999999999999999999999998 8999999999999999999999999999999999999986
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.7e-27 Score=214.20 Aligned_cols=255 Identities=17% Similarity=0.229 Sum_probs=203.2
Q ss_pred CeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE
Q 009203 208 ATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW 282 (540)
Q Consensus 208 ~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 282 (540)
..+.+|+.. ..+.-..+.|++++|..| |++||.|...|.|+|+|..+...+..+ .+|+.+|..+.|
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~--------~ah~apv~~~~f 118 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQL--------YAHQAPVHVTKF 118 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHHH--------hhccCceeEEEe
Confidence 345566443 345667789999999996 999999999999999996653333334 589999999999
Q ss_pred ecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC
Q 009203 283 HPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED 361 (540)
Q Consensus 283 ~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 361 (540)
+|.++ .|++| +.|+.+++||+.+. .....+.+ |.+.|.|.+|+|.++.+++||+.||.|++||++....
T Consensus 119 ~~~d~t~l~s~----sDd~v~k~~d~s~a---~v~~~l~~---htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 119 SPQDNTMLVSG----SDDKVVKYWDLSTA---YVQAELSG---HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred cccCCeEEEec----CCCceEEEEEcCCc---EEEEEecC---CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence 99765 56666 89999999999976 23334554 7899999999998888999999999999999998741
Q ss_pred ccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCC
Q 009203 362 SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPG 439 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d 439 (540)
......|..+|..+.|-|.|..+++++.. .|++||+.+|..+.. ..+...++|+.+..++ ..|++|+-|
T Consensus 189 -----~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~---~rLlS~sLD 259 (487)
T KOG0310|consen 189 -----RVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS---TRLLSGSLD 259 (487)
T ss_pred -----eeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCC---ceEeecccc
Confidence 22224599999999999999999998764 899999997665443 3367788888888766 689999999
Q ss_pred CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 440 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
+.|++||+.+.+. .+.+. ..++|.+++.+|++..++.|..||.+.+-+...
T Consensus 260 ~~VKVfd~t~~Kv-v~s~~-------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 260 RHVKVFDTTNYKV-VHSWK-------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cceEEEEccceEE-EEeee-------cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 9999999776553 33332 356899999999999999999999888775443
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.4e-27 Score=203.55 Aligned_cols=260 Identities=15% Similarity=0.164 Sum_probs=208.7
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC--eEEEEeecC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN--SLFSAHTAD 296 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~~~ 296 (540)
+..|.++|++|+.+ +.++|+|+.|-+|+|||+........+ -.|.+.|+++.|.+.-. .|++|
T Consensus 39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l--------l~HagsitaL~F~~~~S~shLlS~---- 103 (362)
T KOG0294|consen 39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL--------LSHAGSITALKFYPPLSKSHLLSG---- 103 (362)
T ss_pred ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce--------eccccceEEEEecCCcchhheeee----
Confidence 57999999999996 789999999999999999988777766 36889999999998765 89999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.||.|.+|+.... .++..+.. |.+.|+.++.+| .+.+.++.+.|+.+++|++-+|+..+... ..+ .
T Consensus 104 sdDG~i~iw~~~~W---~~~~slK~---H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~----L~~--~ 170 (362)
T KOG0294|consen 104 SDDGHIIIWRVGSW---ELLKSLKA---HKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN----LKN--K 170 (362)
T ss_pred cCCCcEEEEEcCCe---EEeeeecc---cccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeec----cCC--c
Confidence 99999999999874 66777775 677799999999 99999999999999999999887422111 112 2
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
.+.+.|+|.|.+++.+..+ .|-+|.+.+............+.++.|...+ .|++|..|+.|.+||..+..+..
T Consensus 171 at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~----~L~vG~d~~~i~~~D~ds~~~~~-- 243 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGS----ELLVGGDNEWISLKDTDSDTPLT-- 243 (362)
T ss_pred ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCc----eEEEecCCceEEEeccCCCccce--
Confidence 3449999999998888876 6899999887776666666677787777654 89999999999999999754332
Q ss_pred eccccccCccccCeEEEEE--cCCCCEEEEEeCCCcEEEEeccCCCCc---ccccccccccceeEEEE
Q 009203 457 FGWKQESSESQSALINQSW--SPDGLYITSGSADPVIHLFDIRYSANK---PSQSIRAHQKRVFKAVW 519 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~--sp~g~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~h~~~i~~l~~ 519 (540)
.+.+|...|-++.+ .|++.+|+++++||.|+|||++....+ ++..+.. ...++|+..
T Consensus 244 -----~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 244 -----EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred -----eeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 55789999999884 567899999999999999999973222 2333222 445666654
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=210.66 Aligned_cols=263 Identities=13% Similarity=0.172 Sum_probs=224.8
Q ss_pred eEEecCCCCeEEEeccc-------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccc
Q 009203 200 LVRTSASPATIHCHTSN-------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT 266 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~ 266 (540)
.+++++.|+-|.+|+.. .-+--|.+.|.|++|+.| ..+||+|+.||.|+||.+.++.+++.+.
T Consensus 227 yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIKvWri~tG~ClRrFd--- 302 (508)
T KOG0275|consen 227 YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIKVWRIETGQCLRRFD--- 302 (508)
T ss_pred eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcEEEEEEecchHHHHhh---
Confidence 57888999999999653 225678899999999996 8999999999999999999999998885
Q ss_pred ccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203 267 DCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG 346 (540)
Q Consensus 267 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 346 (540)
..|...|+|+.|+.|+..++++ +.|.++++.-+.+| +++..+.+ |.+.|+...|.+ +|..+++++
T Consensus 303 ----rAHtkGvt~l~FSrD~SqiLS~----sfD~tvRiHGlKSG---K~LKEfrG---HsSyvn~a~ft~-dG~~iisaS 367 (508)
T KOG0275|consen 303 ----RAHTKGVTCLSFSRDNSQILSA----SFDQTVRIHGLKSG---KCLKEFRG---HSSYVNEATFTD-DGHHIISAS 367 (508)
T ss_pred ----hhhccCeeEEEEccCcchhhcc----cccceEEEeccccc---hhHHHhcC---ccccccceEEcC-CCCeEEEec
Confidence 4799999999999999999999 99999999999987 56777775 788999999999 999999999
Q ss_pred cCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeec----cCccEEEE
Q 009203 347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQ----IESKCMSV 421 (540)
Q Consensus 347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~ 421 (540)
.||+|++|+..+.+|...++ ..+...+|+++..-| +...+++|....+|++.++. |+.+..+. .++...+.
T Consensus 368 sDgtvkvW~~KtteC~~Tfk---~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFK---PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred CCccEEEecCcchhhhhhcc---CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence 99999999999999844443 344566788888776 45678889999999999987 66655433 34667788
Q ss_pred eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
..+|.+ .++.+.+.|+.++.|.+.++.... .+.-|...|..++-+|..+.||+-++||.+++|.
T Consensus 444 ~lSpkG---ewiYcigED~vlYCF~~~sG~LE~-------tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 444 ILSPKG---EWIYCIGEDGVLYCFSVLSGKLER-------TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EecCCC---cEEEEEccCcEEEEEEeecCceee-------eeecccccccccccCcccchhhhhcccchhhhcC
Confidence 888887 689999999999999999887543 4466888999999999999999999999999995
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-28 Score=228.92 Aligned_cols=296 Identities=21% Similarity=0.284 Sum_probs=229.4
Q ss_pred cccCceE---EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 221 LHKRKLR---SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 221 ~h~~~V~---~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.|...|. .+..++.++++|+|||.||.|++|++........-. .......|.++|+.++...+|+.|+++ +
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--~~asme~HsDWVNDiiL~~~~~tlIS~----S 92 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--YIASMEHHSDWVNDIILCGNGKTLISA----S 92 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc--hhhhhhhhHhHHhhHHhhcCCCceEEe----c
Confidence 4555666 666666578899999999999999987654321111 111125799999999999999999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE-eCCCCCEEEEEecCCcEEEEecCCCCC--cccccee---ec-
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF-LPWENPCFATGGSDHAVVLWSERDAED--SWKPKAL---HR- 370 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~---~~- 370 (540)
.|-+|++|+...+. ..|..++.. |.+.|.|++. .+ +..++|+||.|+.|.+||+.++.. +.....+ ..
T Consensus 93 sDtTVK~W~~~~~~-~~c~stir~---H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDN-TFCMSTIRT---HKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred CCceEEEeecccCc-chhHhhhhc---ccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence 99999999998653 356666664 7899999999 56 889999999999999999998732 1111111 11
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
.++...|++++.++.|..|++|+..+.+++||.++++.+... .+...+..+..++++ ..+++++.||+|++||+..
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG---t~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG---TRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC---CeEeecCCCceEEeeeccc
Confidence 268889999999999999999999999999999998876654 455778888888888 7899999999999999998
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~ 529 (540)
..+.. ++..|...|+++..+|+-.++++|+.||.|+.=|+.+. .+....++ ...+|..+..+...+-+-++
T Consensus 245 QrCl~-------T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~~~tlick-~daPv~~l~~~~~~~~~Wvt 315 (735)
T KOG0308|consen 245 QRCLA-------TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP-AKSTLICK-EDAPVLKLHLHEHDNSVWVT 315 (735)
T ss_pred cceee-------eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc-hhheEeec-CCCchhhhhhccccCCceee
Confidence 77655 34568888999999999999999999999999999974 22222222 34467777766444444566
Q ss_pred EcCCcEEEEe
Q 009203 530 SSDLNIGLHK 539 (540)
Q Consensus 530 ~~dg~v~iw~ 539 (540)
..|+.|+-|.
T Consensus 316 Ttds~I~rW~ 325 (735)
T KOG0308|consen 316 TTDSSIKRWK 325 (735)
T ss_pred eccccceecC
Confidence 6788888875
No 98
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1e-25 Score=205.88 Aligned_cols=355 Identities=15% Similarity=0.235 Sum_probs=255.1
Q ss_pred cCCcceeeEEEEcccccccCCCCccEE---------EEeecCCC-ceEEecccccccceEEecC-------------CCC
Q 009203 152 SPAAHSIGIVKVKGEKSHRNSSDSEIV---------EVRDRGTK-RKFEQKEHRELIPLVRTSA-------------SPA 208 (540)
Q Consensus 152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~v~~~~~~~-------------~d~ 208 (540)
-+|...|.|+.++|.+...+.+...-. ..|..-.- ....+...+.-|.+++|+. ++.
T Consensus 101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h 180 (626)
T KOG2106|consen 101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPH 180 (626)
T ss_pred cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcc
Confidence 489999999999998776663322211 11110000 0111223344555666554 455
Q ss_pred eEEEeccch-----hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe
Q 009203 209 TIHCHTSNH-----VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH 283 (540)
Q Consensus 209 ~i~~~~~~~-----~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 283 (540)
.+.+|+... -.+.-+..|....|+|.+.+++++++ .|.+.+|+...+....+... ++ ......|.|++|.
T Consensus 181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~-fe---k~ekk~Vl~v~F~ 255 (626)
T KOG2106|consen 181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGI-FE---KREKKFVLCVTFL 255 (626)
T ss_pred ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeec-cc---cccceEEEEEEEc
Confidence 667776541 12344567889999997666777765 68999999988765433321 11 1223679999999
Q ss_pred cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--
Q 009203 284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED-- 361 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-- 361 (540)
++|+. ++| ..+|.|.||+..+. ...+... .|.+.|.+++... +|.+| +|+.|..|..||-.-.+.
T Consensus 256 engdv-iTg----DS~G~i~Iw~~~~~---~~~k~~~---aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 256 ENGDV-ITG----DSGGNILIWSKGTN---RISKQVH---AHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred CCCCE-Eee----cCCceEEEEeCCCc---eEEeEee---ecCCceEEEEEec-CccEe-ecCccceEEecccccccccc
Confidence 99874 566 89999999999764 2222222 3678899999997 77655 599999999998321110
Q ss_pred ---------------------------------ccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe
Q 009203 362 ---------------------------------SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA 408 (540)
Q Consensus 362 ---------------------------------~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 408 (540)
+..-..+...+|......++.+|+.+.+++++.|+.+++|+ ..+.
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~ 400 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL 400 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence 00001122256888889999999999999999999999999 5777
Q ss_pred eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203 409 DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD 488 (540)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d 488 (540)
+........+.++.|+|.+ .++.|+..|...+.|..+...... ... ..+++++.|+|+|.+||.|+.|
T Consensus 401 ~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w~V~d~e~~~lv~~-------~~d-~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 401 EWTKIIEDPAECADFHPSG----VVAVGTATGRWFVLDTETQDLVTI-------HTD-NEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred eEEEEecCceeEeeccCcc----eEEEeeccceEEEEecccceeEEE-------Eec-CCceEEEEEcCCCCEEEEecCC
Confidence 7888888899999999987 899999999999999998543221 122 6789999999999999999999
Q ss_pred CcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 489 PVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 489 g~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
+.|+||.+... +..+... +.|..+|+.+.|++|+++|++-+.|-.|..|+
T Consensus 469 ~~iyiy~Vs~~-g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 469 NHIYIYRVSAN-GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CeEEEEEECCC-CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 99999999875 4433333 33457999999999999999999999999994
No 99
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=6.8e-26 Score=219.00 Aligned_cols=372 Identities=15% Similarity=0.150 Sum_probs=273.4
Q ss_pred CCCCCeeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccc----------eEEecCCCCeE
Q 009203 143 DPSGSSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIP----------LVRTSASPATI 210 (540)
Q Consensus 143 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~----------~~~~~~~d~~i 210 (540)
+....+.+.+++...|+++.-.|.--..+ -.++.+......-....+..+...+.|. .++++...+.+
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 44455566667777777766665533333 3344444222222222222222223333 35555667889
Q ss_pred EEeccc------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe-
Q 009203 211 HCHTSN------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH- 283 (540)
Q Consensus 211 ~~~~~~------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~- 283 (540)
-+||.+ .+...|.+.|+...|.| +...|++++.|+.+++|-.+++.....+.... .||..+..+++|.
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R----~GHs~Pp~~irfy~ 344 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR----GGHSAPPSCIRFYG 344 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeec----cCCCCCchheeeec
Confidence 999876 34568999999999999 68899999999999999887666544444433 5999999999998
Q ss_pred cCCCeEEEEeecCCCCCeEEEEecCCCCCce-------------------------eEE---------------------
Q 009203 284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRA-------------------------CVT--------------------- 317 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~-------------------------~~~--------------------- 317 (540)
..|.++.++ +.|++++.+++......+ .+.
T Consensus 345 ~~g~~ilsa----~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~ 420 (910)
T KOG1539|consen 345 SQGHFILSA----KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG 420 (910)
T ss_pred cCcEEEEec----ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence 678889998 888877777654210000 000
Q ss_pred -----------------eecCC--CCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 318 -----------------FLDDK--PHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 318 -----------------~~~~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
.+... ......+++++.++ .|++.+.|+..|.|-+|++.+|-.....- ....|.++|+
T Consensus 421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--~~~ah~~~V~ 497 (910)
T KOG1539|consen 421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFG--DSPAHKGEVT 497 (910)
T ss_pred cceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccc--cCccccCcee
Confidence 00000 01235688899999 99999999999999999999986422111 1246999999
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 458 (540)
+++...-++.+++++.+|.+.+||..+...+.....+..+..+..+... .+++.+..|-.|.++|..+.....
T Consensus 498 gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s---~l~a~~~ddf~I~vvD~~t~kvvR---- 570 (910)
T KOG1539|consen 498 GLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS---DLLAIALDDFSIRVVDVVTRKVVR---- 570 (910)
T ss_pred EEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh---hhhhhhcCceeEEEEEchhhhhhH----
Confidence 9999888899999999999999999988877777777777888777665 478889999999999998776433
Q ss_pred cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC-CcEEE
Q 009203 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-LNIGL 537 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-g~v~i 537 (540)
.+.+|.+.|++++|||||++|++++.|++|++||+.+ +.++-.+. -..+.+++.|+|+|.+||++..| .-|++
T Consensus 571 ---~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt--~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 571 ---EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT--GTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred ---HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC--cceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEE
Confidence 6678999999999999999999999999999999998 66665554 35678999999999999999988 66999
Q ss_pred Ee
Q 009203 538 HK 539 (540)
Q Consensus 538 w~ 539 (540)
|-
T Consensus 645 Ws 646 (910)
T KOG1539|consen 645 WS 646 (910)
T ss_pred EE
Confidence 93
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.6e-27 Score=210.80 Aligned_cols=291 Identities=12% Similarity=0.133 Sum_probs=223.0
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCe
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQ 301 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~ 301 (540)
.++|++|.|+| ...+|++++.||+++||.++..... +..... -...+|.+++|.|+|. .++++ +....
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~--~lqS~~----l~~fPi~~a~f~p~G~~~i~~s----~rrky 281 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIH----LEKFPIQKAEFAPNGHSVIFTS----GRRKY 281 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccCh--hheeee----eccCccceeeecCCCceEEEec----ccceE
Confidence 47899999999 5999999999999999999754432 222111 2246789999999999 88888 89999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
++.||+.+.+. ..+..+.+.. ...+.....+| ++++|+..+..|.|.+....+++.+..++ -.+.|.+++
T Consensus 282 ~ysyDle~ak~-~k~~~~~g~e--~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K------ieG~v~~~~ 351 (514)
T KOG2055|consen 282 LYSYDLETAKV-TKLKPPYGVE--EKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK------IEGVVSDFT 351 (514)
T ss_pred EEEeecccccc-ccccCCCCcc--cchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee------eccEEeeEE
Confidence 99999997643 2222233322 33477888899 99999999999999999999988632222 557899999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc--EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK--CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
|+.+++.|++++.+|.|.+||++...++..+..++. ..+++.++.+ .+||+|+..|.|.|||.++........ .
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng---~ylA~GS~~GiVNIYd~~s~~~s~~Pk-P 427 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG---SYLATGSDSGIVNIYDGNSCFASTNPK-P 427 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC---ceEEeccCcceEEEeccchhhccCCCC-c
Confidence 999999999999999999999999988777655544 4456666655 699999999999999976532111100 0
Q ss_pred ccccCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEeccCCCCcccccccc---cccceeEEEEcCCCCEEEEEEcCCc
Q 009203 460 KQESSESQSALINQSWSPDGLYITSGSA--DPVIHLFDIRYSANKPSQSIRA---HQKRVFKAVWHYSHPLLISISSDLN 534 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~---h~~~i~~l~~s~~~~~l~s~~~dg~ 534 (540)
...+..-...|+++.|++|+.+||.++. +..+++-.+.+ ......|.. .-+.|+||+|+|.|.+|+.|..+|.
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS--~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS--CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc--eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 1133445668999999999999988764 67899888876 444444443 3346899999999999999999999
Q ss_pred EEEEeC
Q 009203 535 IGLHKI 540 (540)
Q Consensus 535 v~iw~l 540 (540)
|.+|+|
T Consensus 506 v~l~kL 511 (514)
T KOG2055|consen 506 VHLFKL 511 (514)
T ss_pred eeeEee
Confidence 999986
No 101
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=2.2e-26 Score=222.32 Aligned_cols=343 Identities=14% Similarity=0.150 Sum_probs=264.9
Q ss_pred CCCccEEEEeecCCCceEEecccccccce---------EEecCCCCeEEEeccc--hh---cccccCceEEEEEecCCCc
Q 009203 172 SSDSEIVEVRDRGTKRKFEQKEHRELIPL---------VRTSASPATIHCHTSN--HV---SSLHKRKLRSLSLNPVNEQ 237 (540)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~~~~~~d~~i~~~~~~--~~---~~~h~~~V~~l~~spd~~~ 237 (540)
+..+.+..+.....+..+...++...|++ ++.|-.+++|.+++.. .+ ++.-.+.|+.++|.-|+..
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP 258 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe
Confidence 34445554444555566666777776655 4556679999999765 22 3433599999999998888
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT 317 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~ 317 (540)
++|+|+..|.+-+||++..+...... ..|.+.|....|.|....++++ +.|..+++|-.+++.+. .+
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~-------nah~~sv~~~~fl~~epVl~ta----~~DnSlk~~vfD~~dg~--pR 325 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTR-------NAHYGSVTGATFLPGEPVLVTA----GADNSLKVWVFDSGDGV--PR 325 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeee-------ccccCCcccceecCCCceEeec----cCCCceeEEEeeCCCCc--ch
Confidence 99999999999999999876555443 3688889999999999999999 99999999977766442 33
Q ss_pred eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC------------------------------------
Q 009203 318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED------------------------------------ 361 (540)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------------------------------------ 361 (540)
.+....+|..+..|+.|.-..+..+.+++.|++.+.+++.....
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 34444468899999999865888888888888777665422100
Q ss_pred --------------------ccccce-------ee---cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009203 362 --------------------SWKPKA-------LH---RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK 411 (540)
Q Consensus 362 --------------------~~~~~~-------~~---~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 411 (540)
.|..+. +. ...-...+++++.++.|++.+.|+..|.|-+|++.+|.....
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 000000 00 001225688999999999999999999999999999877655
Q ss_pred e----ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203 412 H----QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA 487 (540)
Q Consensus 412 ~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 487 (540)
+ .+...+..++.+.-+ +.+++++.+|.+++||...... ...+ .-...++++.++.....++.+..
T Consensus 486 f~~~~ah~~~V~gla~D~~n---~~~vsa~~~Gilkfw~f~~k~l-~~~l-------~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 486 FGDSPAHKGEVTGLAVDGTN---RLLVSAGADGILKFWDFKKKVL-KKSL-------RLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred cccCccccCceeEEEecCCC---ceEEEccCcceEEEEecCCcce-eeee-------ccCCCcceeeeeehhhhhhhhcC
Confidence 5 566788888888766 7899999999999999987662 2221 12346888889888889999999
Q ss_pred CCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 488 DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 488 dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|-.|+++|+.+ .+.++.+.+|.+.|++++|||||++|++++.|++|++||+
T Consensus 555 df~I~vvD~~t--~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 555 DFSIRVVDVVT--RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred ceeEEEEEchh--hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 99999999998 8899999999999999999999999999999999999996
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-26 Score=198.20 Aligned_cols=237 Identities=22% Similarity=0.288 Sum_probs=194.6
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC--EEEEEecC
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP--CFATGGSD 348 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~s~~~d 348 (540)
..|...|++++.+ +.++|+| +.|-+|+|||+.... .+..+- .|.+.|+++.|.+ ... .|++|+.|
T Consensus 40 ~aH~~sitavAVs--~~~~aSG----ssDetI~IYDm~k~~---qlg~ll---~HagsitaL~F~~-~~S~shLlS~sdD 106 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASG----SSDETIHIYDMRKRK---QLGILL---SHAGSITALKFYP-PLSKSHLLSGSDD 106 (362)
T ss_pred cccccceeEEEec--ceeEecc----CCCCcEEEEeccchh---hhccee---ccccceEEEEecC-CcchhheeeecCC
Confidence 6899999999985 7899999 999999999999752 233333 3688999999987 544 89999999
Q ss_pred CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCC
Q 009203 349 HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDF 428 (540)
Q Consensus 349 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (540)
|.|.+|+...-.+ ...+ .+|.+.|+.++.+|.|++-++.+.|+.+++||+-+|+.-+..........+.|+|.+
T Consensus 107 G~i~iw~~~~W~~---~~sl--K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~G- 180 (362)
T KOG0294|consen 107 GHIIIWRVGSWEL---LKSL--KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQG- 180 (362)
T ss_pred CcEEEEEcCCeEE---eeee--cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCC-
Confidence 9999999987654 2333 569999999999999999999999999999999999988877777777779999887
Q ss_pred CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203 429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR 508 (540)
Q Consensus 429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 508 (540)
.+++.+.. ..|-+|.+.+....... .....+.++.|. ++.+|++|+.|+.|.+||.++ ..++..+.
T Consensus 181 --d~F~v~~~-~~i~i~q~d~A~v~~~i--------~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds--~~~~~~~~ 246 (362)
T KOG0294|consen 181 --DHFVVSGR-NKIDIYQLDNASVFREI--------ENPKRILCATFL-DGSELLVGGDNEWISLKDTDS--DTPLTEFL 246 (362)
T ss_pred --CEEEEEec-cEEEEEecccHhHhhhh--------hccccceeeeec-CCceEEEecCCceEEEeccCC--Cccceeee
Confidence 45555544 47889998865532221 112346777776 678999999999999999998 78999999
Q ss_pred ccccceeEEEE--cCCCCEEEEEEcCCcEEEEeC
Q 009203 509 AHQKRVFKAVW--HYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 509 ~h~~~i~~l~~--s~~~~~l~s~~~dg~v~iw~l 540 (540)
+|..+|-++.+ .|++.+|+|+|.||.|+|||+
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 99999999985 467889999999999999996
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-27 Score=196.37 Aligned_cols=254 Identities=16% Similarity=0.205 Sum_probs=201.6
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe-CCCCCEEEEEecCC
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL-PWENPCFATGGSDH 349 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg 349 (540)
..|.+.|.++...--|+.|+++ +.|++|+|+.+........+..+.+ |.++|+.++|. |.-|.+|++++.||
T Consensus 8 t~H~D~IHda~lDyygkrlATc----sSD~tVkIf~v~~n~~s~ll~~L~G---h~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATC----SSDGTVKIFEVRNNGQSKLLAELTG---HSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeee----cCCccEEEEEEcCCCCceeeeEecC---CCCCeeEEeecccccCcEeeEeecCc
Confidence 5788889998888889999999 9999999999997755466666775 88999999995 65799999999999
Q ss_pred cEEEEecCCCCCccccceeecccCCcceeEEEeccC--CCEEEEEeCCCeEEEEECCCC-Ce---eeeeccCccEEEEee
Q 009203 350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGVG-RA---DFKHQIESKCMSVLP 423 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~-~~---~~~~~~~~~~~~~~~ 423 (540)
.|.||.-.+++- .+......|...|++++|-|. |-.|++++.||.|.+.+.+.. .- .....+...+.+++|
T Consensus 81 kVIiWke~~g~w---~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 81 KVIIWKEENGRW---TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred eEEEEecCCCch---hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 999999998853 233344669999999999885 568899999999999998764 11 112344566777888
Q ss_pred cCCCCCc-----------eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC----CEEEEEeCC
Q 009203 424 NPCDFNL-----------FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG----LYITSGSAD 488 (540)
Q Consensus 424 ~~~~~~~-----------~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g----~~l~sg~~d 488 (540)
.|....+ +.|++|+.|+.|+||+.....-. ....+.+|...|..++|.|.- .+||+++.|
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-----~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-----LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchh-----hhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 7763222 57999999999999999876321 123578999999999999963 579999999
Q ss_pred CcEEEEeccCCCCc-ccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 489 PVIHLFDIRYSANK-PSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 489 g~i~iwd~~~~~~~-~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
|++.||..+..... ....+......++.+.||..|++|+.++.|+.|.+|+
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 99999988742111 1122233456799999999999999999999999996
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=6.5e-27 Score=221.67 Aligned_cols=279 Identities=15% Similarity=0.183 Sum_probs=223.1
Q ss_pred ccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEec-CCCeEEE
Q 009203 214 TSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHP-QGNSLFS 291 (540)
Q Consensus 214 ~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~-~~~~l~s 291 (540)
...+.+.||...|..+++.+ +-.++++|.||++++|+-...+...+... .+|.+.|.. ++|-+ ++-.|++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~------~~~~g~i~~~i~y~e~~~~~l~~ 76 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAF------EGPKGFIANSICYAESDKGRLVV 76 (745)
T ss_pred eeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceec------ccCcceeeccceeccccCcceEe
Confidence 34467899999999999986 45899999999999999876654432211 467777776 88875 4446888
Q ss_pred EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc
Q 009203 292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN 371 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 371 (540)
| +.|.+|.+|..... ..+.++.+ |+..|.|++... ++. +++|+.|.++++|....-.. ...
T Consensus 77 g----~~D~~i~v~~~~~~---~P~~~Lkg---H~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~~-------~l~ 137 (745)
T KOG0301|consen 77 G----GMDTTIIVFKLSQA---EPLYTLKG---HKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELVY-------SLQ 137 (745)
T ss_pred e----cccceEEEEecCCC---Cchhhhhc---cccceeeeecCC-cCc-eEecccccceEEecchhhhc-------ccC
Confidence 8 99999999999876 45777776 778899999776 555 99999999999998875432 246
Q ss_pred cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
+|...|.++++-|++ .+++|+.|.+|++|.- ++.+..+. +...+..++.-++. .+++++.||.|++|++ ++
T Consensus 138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~----~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS----HFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred CcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC----CeEeecCCceEEEEec-cC
Confidence 799999999999877 8899999999999987 44444433 45666788888874 6899999999999999 45
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
++.. +..+|++.|.+++..+++..++++++|++++||+.. .+.+.+.-..-.|+++.+-++|. +++||
T Consensus 210 e~l~-------~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~ 277 (745)
T KOG0301|consen 210 EVLL-------EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLNGD-IVVGG 277 (745)
T ss_pred ceee-------eeeccceEEEEEEecCCCCeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeCCC-EEEec
Confidence 5544 345799999999988889999999999999999987 45556654455899999988887 77788
Q ss_pred cCCcEEEEe
Q 009203 531 SDLNIGLHK 539 (540)
Q Consensus 531 ~dg~v~iw~ 539 (540)
.||.||||-
T Consensus 278 SDG~VrVfT 286 (745)
T KOG0301|consen 278 SDGRVRVFT 286 (745)
T ss_pred cCceEEEEE
Confidence 899999995
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.8e-26 Score=186.79 Aligned_cols=252 Identities=21% Similarity=0.293 Sum_probs=196.3
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC------CCC---ceeEEeecCCCCcccceeEEEEeCCCCCEEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK------TKG---RACVTFLDDKPHVKGIINSIIFLPWENPCFAT 344 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~------~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 344 (540)
...|.+++|+|.|.+.++| +...+++|..... +.. ......+....||++.|.|.+|+| +|.+|++
T Consensus 32 sqairav~fhp~g~lyavg----snskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliat 106 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVG----SNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIAT 106 (350)
T ss_pred hhheeeEEecCCCceEEec----cCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEe
Confidence 4568999999999999999 8999988875432 100 111223334457899999999999 9999999
Q ss_pred EecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc----CCCEEEEEeC-CCeEEEEECCCCCeeeee-ccCccE
Q 009203 345 GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ----QKQIVLSAGA-DKRIIGFDAGVGRADFKH-QIESKC 418 (540)
Q Consensus 345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~-~~~~~~ 418 (540)
|+.|.+|++..++...+...-..+....|.+.|..++|.. .|..|++++. |..|++-|...|+..... .+.+.+
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 9999999998877665533334455567999999999954 3556666554 667888888888876654 345666
Q ss_pred EEEe-ecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc---cccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009203 419 MSVL-PNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE---SQSALINQSWSPDGLYITSGSADPVIHLF 494 (540)
Q Consensus 419 ~~~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~sg~~dg~i~iw 494 (540)
.++. |+. .++++|+.|.+|++||++-..+... ++ ..+.+ ..+.|.+++..|.|++|++|-.|....+|
T Consensus 187 lalyswn~-----~m~~sgsqdktirfwdlrv~~~v~~-l~--~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 187 LALYSWNG-----AMFASGSQDKTIRFWDLRVNSCVNT-LD--NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred EEEEEecC-----cEEEccCCCceEEEEeeeccceeee-cc--CcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 6653 544 5999999999999999997664332 21 12222 13579999999999999999999999999
Q ss_pred eccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 495 DIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 495 d~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|++. ++++..+..|...|.++.|+|...|+.+|++|..|++=|+
T Consensus 259 dirg--~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 259 DIRG--GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred EeeC--CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 9997 8899999999999999999999999999999999998775
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.1e-26 Score=196.52 Aligned_cols=243 Identities=16% Similarity=0.183 Sum_probs=194.3
Q ss_pred CCCCCceeEEEecCC-CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203 272 KHRRWPEDIAWHPQG-NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA 350 (540)
Q Consensus 272 ~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 350 (540)
.-.+.|.+++|||.. .+++++ +.|++|++|++.... ..+. .....|.++|.+++|+. +|..+++|+.|+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~----SWD~tVR~wevq~~g--~~~~--ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAG----SWDGTVRIWEVQNSG--QLVP--KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQ 95 (347)
T ss_pred CcccchheeEeccccCceEEec----ccCCceEEEEEecCC--cccc--hhhhccCCCeEEEEEcc-CCceEEeeccCCc
Confidence 345779999999944 455566 999999999998631 1111 22224678999999999 9999999999999
Q ss_pred EEEEecCCCCCccccceeecccCCcceeEEEeccCCC--EEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCC
Q 009203 351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ--IVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDF 428 (540)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (540)
+++||+.+++. ..+ ..|.++|.++.|-+... .|++|+.|.+|+.||++...++........+.++..-.
T Consensus 96 ~k~wDL~S~Q~----~~v--~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--- 166 (347)
T KOG0647|consen 96 AKLWDLASGQV----SQV--AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--- 166 (347)
T ss_pred eEEEEccCCCe----eee--eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC---
Confidence 99999999873 444 44999999999977555 89999999999999999999999999888888776543
Q ss_pred CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203 429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR 508 (540)
Q Consensus 429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 508 (540)
.+++++..+..|.+|+++......... ...-...+.||+..+|..-.+.|+-.|.+.|..++.+..+.-.+|+
T Consensus 167 --pm~vVata~r~i~vynL~n~~te~k~~-----~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 167 --PMAVVATAERHIAVYNLENPPTEFKRI-----ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred --ceeEEEecCCcEEEEEcCCCcchhhhh-----cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 378888999999999998765433321 1223446889999888888899999999999999974334555666
Q ss_pred cccc---------ceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 509 AHQK---------RVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 509 ~h~~---------~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.|.. .|++|+|+|.-..|+|+|.||++.+||
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 6752 578999999989999999999999998
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-25 Score=192.88 Aligned_cols=242 Identities=15% Similarity=0.176 Sum_probs=193.4
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec--CCcE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS--DHAV 351 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i 351 (540)
...|+++.|+++|.+++++ +.|.+|++||..++ ..+..+.. ++-.+..++|.. ..+.++.++. |.+|
T Consensus 14 ~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~~g---~~~~ti~s---kkyG~~~~~Fth-~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITS----SEDDSLRLYDSLSG---KQVKTINS---KKYGVDLACFTH-HSNTVIHSSTKEDDTI 82 (311)
T ss_pred CCceeEEEecCCCCEEEEe----cCCCeEEEEEcCCC---ceeeEeec---ccccccEEEEec-CCceEEEccCCCCCce
Confidence 4669999999999999999 99999999999987 44555543 233488888887 5566666665 8899
Q ss_pred EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203 352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (540)
+..++.+.+. ++ ...||...|++++.+|-+..+++++.|++|++||++..++.-....... ...+++|.+ .
T Consensus 83 ryLsl~dNky---lR--YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~G---L 153 (311)
T KOG1446|consen 83 RYLSLHDNKY---LR--YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEG---L 153 (311)
T ss_pred EEEEeecCce---EE--EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCC---c
Confidence 9999999875 33 3378999999999999999999999999999999997766443333322 345788887 7
Q ss_pred EEEEEcCCCeEEEEECCCCc-ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 432 MVQTGTPGRQLRLYDIRLRQ-TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
++|++...+.|++||++... .+...+... .+.....+.+.|||||++|+.+...+.+++.|.-. +....++.++
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~---~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~--G~~~~tfs~~ 228 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSIT---DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD--GTVKSTFSGY 228 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccC---CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC--CcEeeeEeec
Confidence 88888888899999999763 344444322 13456789999999999999999999999999988 6777777766
Q ss_pred ccce---eEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 511 QKRV---FKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 511 ~~~i---~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
...- ....|+||++++++|+.||+|.+|++
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred cCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 5432 57889999999999999999999985
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.4e-26 Score=227.34 Aligned_cols=280 Identities=15% Similarity=0.228 Sum_probs=210.0
Q ss_pred eEEecC--CCCeEEEeccc-----------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcc
Q 009203 200 LVRTSA--SPATIHCHTSN-----------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGA 260 (540)
Q Consensus 200 ~~~~~~--~d~~i~~~~~~-----------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~ 260 (540)
.+++++ .|+.+++|+.+ .....|.+.|+|+.|+|| |.+||+|+.|+.|.||..... ...
T Consensus 27 ~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~~~~-~~~ 104 (942)
T KOG0973|consen 27 KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWERAEI-GSG 104 (942)
T ss_pred eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeeeccc-CCc
Confidence 455666 67888888553 225689999999999996 999999999999999998841 111
Q ss_pred eeecc-----------cccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccce
Q 009203 261 SLLST-----------TDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGII 329 (540)
Q Consensus 261 ~~~~~-----------~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 329 (540)
..... ......+|...|..++|+|++.+|+++ +.|++|.||+..+. .++..+.+ |.+.|
T Consensus 105 ~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~----s~DnsViiwn~~tF---~~~~vl~~---H~s~V 174 (942)
T KOG0973|consen 105 TVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV----SLDNSVIIWNAKTF---ELLKVLRG---HQSLV 174 (942)
T ss_pred ccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe----cccceEEEEccccc---eeeeeeec---ccccc
Confidence 11100 011125899999999999999999999 99999999999985 66777776 77889
Q ss_pred eEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc-eeecccCCcceeEEEeccCCCEEEEEeC----CCeEEEEECC
Q 009203 330 NSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK-ALHRNLHSSAVMGVAGMQQKQIVLSAGA----DKRIIGFDAG 404 (540)
Q Consensus 330 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~ 404 (540)
..+.|.| -|++|++-+.|++|+||++.+-....... .+....-......+.|||||.+|++... -.++.|.+-.
T Consensus 175 KGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~ 253 (942)
T KOG0973|consen 175 KGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG 253 (942)
T ss_pred cceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence 9999999 99999999999999999976633211111 1111123456788999999999998654 2357777765
Q ss_pred CCCe-eeeeccCccEEEEeecCCC---C-----------CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203 405 VGRA-DFKHQIESKCMSVLPNPCD---F-----------NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA 469 (540)
Q Consensus 405 ~~~~-~~~~~~~~~~~~~~~~~~~---~-----------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 469 (540)
+-+. .....+...+..+.|+|.= . ....+|+|+.|++|.||.....+..+... .-....
T Consensus 254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~------~lf~~S 327 (942)
T KOG0973|consen 254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH------NLFNKS 327 (942)
T ss_pred CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh------hhhcCc
Confidence 5443 2335566788888898730 0 11278999999999999997666544322 123458
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 470 LINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 470 v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
|..++|+|||-.|++++.||+|.++.++.
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 99999999999999999999999999985
No 109
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.9e-25 Score=220.04 Aligned_cols=248 Identities=17% Similarity=0.109 Sum_probs=182.3
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC----------ceeEEeecCCCCcccceeEEEEeCCCCCEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG----------RACVTFLDDKPHVKGIINSIIFLPWENPCFAT 344 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 344 (540)
..|.....++++..++++ +.+.....|+...+.. ......+. +|.+.|.+++|+|.++.+|++
T Consensus 21 ~~i~~~~~~~d~~~~~~~----n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~---GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIAC----NDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL---GQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred eccccccccCCCCCcEeE----CCceEEEEEecCCceEEeeccccccCCCCCceEe---CCCCCEEEEEEcCCCCCEEEE
Confidence 445556666676666666 6666666776543310 00011122 478899999999977889999
Q ss_pred EecCCcEEEEecCCCCCccc--cceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEE
Q 009203 345 GGSDHAVVLWSERDAEDSWK--PKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMS 420 (540)
Q Consensus 345 ~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 420 (540)
|+.|++|++||+.++..... .......+|...|.+++|+|++ ++|++++.|+.|++||+.+++.+.... +...+.+
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~s 173 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITS 173 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence 99999999999986532110 1122336799999999999975 699999999999999999988766654 4567899
Q ss_pred EeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC-eEEEEEcCCCCEEEEEe----CCCcEEEEe
Q 009203 421 VLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA-LINQSWSPDGLYITSGS----ADPVIHLFD 495 (540)
Q Consensus 421 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~sg~----~dg~i~iwd 495 (540)
+.|+|++ .+|++++.|+.|++||++++.... .+.+|.+. +..+.|.+++..|++++ .|+.|++||
T Consensus 174 la~spdG---~lLatgs~Dg~IrIwD~rsg~~v~-------tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 174 LEWNLDG---SLLCTTSKDKKLNIIDPRDGTIVS-------SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred EEEECCC---CEEEEecCCCEEEEEECCCCcEEE-------EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 9999987 689999999999999999876433 23456554 45678999888877654 478999999
Q ss_pred ccCCCCccccccccc-ccceeEEEEcCCCCEEEEEE-cCCcEEEEeC
Q 009203 496 IRYSANKPSQSIRAH-QKRVFKAVWHYSHPLLISIS-SDLNIGLHKI 540 (540)
Q Consensus 496 ~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~~l~s~~-~dg~v~iw~l 540 (540)
+++. ..++.....+ ...+....|++++.+|++++ .|+.|++||+
T Consensus 244 lr~~-~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 244 TRKM-ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCC-CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 9864 3344444333 34566678999999999887 5999999986
No 110
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.7e-26 Score=209.05 Aligned_cols=252 Identities=19% Similarity=0.291 Sum_probs=195.7
Q ss_pred cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc---------------
Q 009203 152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN--------------- 216 (540)
Q Consensus 152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~--------------- 216 (540)
..|...|+.+...|+.|. .|++....+.+.||+..
T Consensus 121 i~h~gEVnRaRymPQnp~------------------------------iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pd 170 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPN------------------------------IVATKTSSGDVYVFDYTKHPSKPKASGECRPD 170 (422)
T ss_pred ccCCccchhhhhCCCCCc------------------------------EEEecCCCCCEEEEEeccCCCcccccccCCCc
Confidence 478999999999999773 34444555555555332
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeec
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTA 295 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~ 295 (540)
..|.||++.-++|+|++...-.|++|+.|++|++||+.......... .......+|...|..++|++-. ..|+++
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv--- 246 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSV--- 246 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc-cceEEeecCCcceehhhccccchhhheee---
Confidence 25789999899999999777789999999999999998765421111 1112226999999999999954 477777
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.|+.+.|||++++ ..+...... .|.+.|+|++|+|.++.+||||+.|++|.+||+++... ......+|..
T Consensus 247 -~dd~~L~iwD~R~~-~~~~~~~~~---ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----~lh~~e~H~d 317 (422)
T KOG0264|consen 247 -GDDGKLMIWDTRSN-TSKPSHSVK---AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----PLHTFEGHED 317 (422)
T ss_pred -cCCCeEEEEEcCCC-CCCCccccc---ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----CceeccCCCc
Confidence 99999999999964 223333333 37889999999999999999999999999999998764 3444577999
Q ss_pred ceeEEEeccCC-CEEEEEeCCCeEEEEECCC-CC-------------eeeeec-cCccEEEEeecCCCCCceEEEEEcCC
Q 009203 376 AVMGVAGMQQK-QIVLSAGADKRIIGFDAGV-GR-------------ADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPG 439 (540)
Q Consensus 376 ~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~-~~-------------~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d 439 (540)
.|.++.|+|+. ..|++++.|+.+.+||+.. ++ .++.|. +...+..+.|+|..+ ..+++.+.|
T Consensus 318 ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP--W~I~SvaeD 395 (422)
T KOG0264|consen 318 EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP--WTIASVAED 395 (422)
T ss_pred ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC--eEEEEecCC
Confidence 99999999964 6788889999999999965 11 124443 346778899999887 589999999
Q ss_pred CeEEEEECC
Q 009203 440 RQLRLYDIR 448 (540)
Q Consensus 440 g~v~i~d~~ 448 (540)
+.+.||.+.
T Consensus 396 N~LqIW~~s 404 (422)
T KOG0264|consen 396 NILQIWQMA 404 (422)
T ss_pred ceEEEeecc
Confidence 999999986
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=217.04 Aligned_cols=311 Identities=14% Similarity=0.172 Sum_probs=234.5
Q ss_pred eEEecCCCCeEEEeccc-----------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--Ccceeeccc
Q 009203 200 LVRTSASPATIHCHTSN-----------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTT 266 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~ 266 (540)
.+-+++.|+.|++|+.. ..+..|.++|+.+....+ ++.|+++|.|-+|++|+...+. +..++
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~sti---- 113 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCMSTI---- 113 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhHhhh----
Confidence 46788999999999543 237899999999999984 8899999999999999998773 33444
Q ss_pred ccCCCCCCCCceeEEE-ecCCCeEEEEeecCCCCCeEEEEecCCCCC-----ceeEEeecCCCCcccceeEEEEeCCCCC
Q 009203 267 DCLSPKHRRWPEDIAW-HPQGNSLFSAHTADSGDSQISVLNLNKTKG-----RACVTFLDDKPHVKGIINSIIFLPWENP 340 (540)
Q Consensus 267 ~~~~~~h~~~V~~~~~-~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 340 (540)
..|.+.|.|+++ .++...+|+| +-|+.|.+||++++.. ...+..-....++...|++++-++ ++.
T Consensus 114 ----r~H~DYVkcla~~ak~~~lvaSg----GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t 184 (735)
T KOG0308|consen 114 ----RTHKDYVKCLAYIAKNNELVASG----GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGT 184 (735)
T ss_pred ----hcccchheeeeecccCceeEEec----CCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cce
Confidence 589999999999 7788899998 9999999999998732 011111111114677899999999 899
Q ss_pred EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEE
Q 009203 341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCM 419 (540)
Q Consensus 341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 419 (540)
.|++|+..+.+++||.++.+. .+...+|+..|.++..++||..+++++.||+|++||+...+++..+..+ ..+.
T Consensus 185 ~ivsGgtek~lr~wDprt~~k-----imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKK-----IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred EEEecCcccceEEeccccccc-----eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 999999999999999999874 4444689999999999999999999999999999999998888775443 3466
Q ss_pred EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS 499 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~ 499 (540)
++..+|+= ..+.+|+.||.|..-|+++.......+ ....+|..+..+.+.+-+-+++.|+.|.-|.....
T Consensus 260 aL~~~~sf---~~vYsG~rd~~i~~Tdl~n~~~~tlic-------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 260 ALQSSPSF---THVYSGGRDGNIYRTDLRNPAKSTLIC-------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred EEeeCCCc---ceEEecCCCCcEEecccCCchhheEee-------cCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 66666543 689999999999999999864333322 12345666666654444566667888888866521
Q ss_pred C-----Ccccc------------------cccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 500 A-----NKPSQ------------------SIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 500 ~-----~~~~~------------------~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
. +.+.. .+.| ..+|..-+.-.|-++++|=..+|.+.+||+
T Consensus 330 ~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDI 392 (735)
T KOG0308|consen 330 IALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDI 392 (735)
T ss_pred cccccCCCCCcccccCCCccccccCCCceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEe
Confidence 0 11110 1111 113444445557789999999999999996
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.6e-27 Score=205.72 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=215.7
Q ss_pred eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccC
Q 009203 150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKR 224 (540)
Q Consensus 150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~ 224 (540)
.+.||...|.+++-+|.. ...+++++.|+.|++|+.. ..+..|.+
T Consensus 61 ~L~gHrdGV~~lakhp~~------------------------------ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G 110 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNK------------------------------LSTVASGSCDGEVKIWNLSQRECIRTFKAHEG 110 (433)
T ss_pred hccccccccchhhcCcch------------------------------hhhhhccccCceEEEEehhhhhhhheeecccC
Confidence 346787777777766663 3468899999999999876 46899999
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV 304 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v 304 (540)
.|..|++.- ..+++++.|.+|+.|.+... ...++.. ...+..+.-+..+..++++ ...|.|
T Consensus 111 ~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~-p~~tilg---------~s~~~gIdh~~~~~~FaTc------Ge~i~I 171 (433)
T KOG0268|consen 111 LVRGICVTQ---TSFFTVGDDKTVKQWKIDGP-PLHTILG---------KSVYLGIDHHRKNSVFATC------GEQIDI 171 (433)
T ss_pred ceeeEEecc---cceEEecCCcceeeeeccCC-cceeeec---------ccccccccccccccccccc------Cceeee
Confidence 999999985 45789999999999998763 3344422 2345667777777788887 345999
Q ss_pred EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203 305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 384 (540)
||..... +++.+.- ..+.|.++.|+|....+|++|+.|+.|.+||++++..+.++. -.-.-+.|+|+|
T Consensus 172 WD~~R~~---Pv~smsw---G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi------~~mRTN~IswnP 239 (433)
T KOG0268|consen 172 WDEQRDN---PVSSMSW---GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI------LTMRTNTICWNP 239 (433)
T ss_pred cccccCC---ccceeec---CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee------eeccccceecCc
Confidence 9997653 3444443 135699999999888889999999999999999988633222 234467899999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe-eee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc
Q 009203 385 QKQIVLSAGADKRIIGFDAGVGRA-DFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE 462 (540)
Q Consensus 385 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 462 (540)
.+-.+++++.|..++.||++.... +.. ..+.+.++++.|+|.+ .-+++|+.|.+|+||..+.+...-..
T Consensus 240 eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG---~EfvsgsyDksIRIf~~~~~~SRdiY------ 310 (433)
T KOG0268|consen 240 EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG---QEFVSGSYDKSIRIFPVNHGHSRDIY------ 310 (433)
T ss_pred cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc---chhccccccceEEEeecCCCcchhhh------
Confidence 888999999999999999997544 333 3445788999999988 68999999999999999866521110
Q ss_pred cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
....-..|.|+.||-|.+|+++|+.|+.|++|....
T Consensus 311 htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 311 HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 011234699999999999999999999999998875
No 113
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.2e-25 Score=192.01 Aligned_cols=297 Identities=16% Similarity=0.153 Sum_probs=222.5
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecc-----cccCCCCCCCCceeEEEecCCC-eEEE
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLST-----TDCLSPKHRRWPEDIAWHPQGN-SLFS 291 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~-----~~~~~~~h~~~V~~~~~~~~~~-~l~s 291 (540)
.-|.+.|+++...+..|+++++|+.||.|.+||++.... ..-+... ......+|.-.|.++.|.|-.. .+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 578899999999998899999999999999999976431 1111111 1112258999999999999544 6666
Q ss_pred EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceee
Q 009203 292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALH 369 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 369 (540)
+ +.|.+++|||.++. +....|.. .+.|.+-+++|-. -.++++|..|-.|++.|+..|.+ ...+
T Consensus 120 s----SFDhtlKVWDtnTl---Q~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~---sH~L- 184 (397)
T KOG4283|consen 120 S----SFDHTLKVWDTNTL---QEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF---SHTL- 184 (397)
T ss_pred c----cccceEEEeecccc---eeeEEeec----CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc---eeee-
Confidence 6 99999999999986 33444442 4668888888732 34678888899999999999986 3333
Q ss_pred cccCCcceeEEEeccCCCE-EEEEeCCCeEEEEECCCC-Ceeee---------------eccCccEEEEeecCCCCCceE
Q 009203 370 RNLHSSAVMGVAGMQQKQI-VLSAGADKRIIGFDAGVG-RADFK---------------HQIESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 370 ~~~~~~~v~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 432 (540)
.+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+... ..+.+.+..++|..++ .+
T Consensus 185 -sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~---~~ 260 (397)
T KOG4283|consen 185 -SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA---RY 260 (397)
T ss_pred -ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc---hh
Confidence 679999999999997654 678999999999999864 22111 1234677888998887 78
Q ss_pred EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK 512 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~ 512 (540)
+++++.|..+++|+...+......++.........-.+. +. +-+...++---.++.+.++++-. +..+..+..|..
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~s--gs~ir~l~~h~k 336 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLE--GSFVRRLSTHLK 336 (397)
T ss_pred hhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccC--ceEEEeeecccc
Confidence 999999999999999988876655543221111111222 22 33444455445668899999987 788899999988
Q ss_pred ceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 513 RVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 513 ~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.|.+.++.|+-+.+.+|+.|+.|..|-
T Consensus 337 ~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 337 RINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred eeeEEeecCchhhhhccccCCcccccc
Confidence 999999999999999999999999984
No 114
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.4e-26 Score=220.54 Aligned_cols=298 Identities=17% Similarity=0.193 Sum_probs=210.8
Q ss_pred CCCCCCCCCeeeec-CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-
Q 009203 139 SGAKDPSGSSTQAS-PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN- 216 (540)
Q Consensus 139 ~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~- 216 (540)
...+....+.++++ .|.++|-++.|.+... .+|+++.|+.|+||...
T Consensus 250 ~kelsal~~~Qe~~~ah~gaIw~mKFS~DGK-------------------------------yLAsaGeD~virVWkVie 298 (712)
T KOG0283|consen 250 PKELSALTVVQEISNAHKGAIWAMKFSHDGK-------------------------------YLASAGEDGVIRVWKVIE 298 (712)
T ss_pred cccceeeEEeeccccccCCcEEEEEeCCCCc-------------------------------eeeecCCCceEEEEEEec
Confidence 34455566667888 8999999999998753 68999999999999543
Q ss_pred -hhcccccCceEEEEEecC-CCc----------------EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCce
Q 009203 217 -HVSSLHKRKLRSLSLNPV-NEQ----------------LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE 278 (540)
Q Consensus 217 -~~~~~h~~~V~~l~~spd-~~~----------------~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~ 278 (540)
..+..+.+.-.++-+.-. ++. ..-.+.....+.+ +... ..+....-+...||.+.|.
T Consensus 299 ~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~-p~~~----f~f~ekP~~ef~GHt~DIL 373 (712)
T KOG0283|consen 299 SERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLL-PLKA----FVFSEKPFCEFKGHTADIL 373 (712)
T ss_pred cchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccC-CCcc----ccccccchhhhhccchhhe
Confidence 122223232222222110 010 0111111111111 1110 1111111222369999999
Q ss_pred eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC
Q 009203 279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD 358 (540)
Q Consensus 279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 358 (540)
++.|+.+ ++|+++ +.|.+|++|++... .|+..|. |.+.|+|++|+|.|.++|++|+-||.|+||++..
T Consensus 374 DlSWSKn-~fLLSS----SMDKTVRLWh~~~~---~CL~~F~----HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d 441 (712)
T KOG0283|consen 374 DLSWSKN-NFLLSS----SMDKTVRLWHPGRK---ECLKVFS----HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD 441 (712)
T ss_pred ecccccC-CeeEec----cccccEEeecCCCc---ceeeEEe----cCCeeEEEEecccCCCcEeecccccceEEeecCc
Confidence 9999976 588888 99999999999864 7888886 7899999999999999999999999999999988
Q ss_pred CCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---------CccEEEEeecCCCCC
Q 009203 359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---------ESKCMSVLPNPCDFN 429 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 429 (540)
.+ +.....-..-|++++|.|||+..+.|+.+|.+++|++...+....... ...++.+.|.|....
T Consensus 442 ~~------Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~ 515 (712)
T KOG0283|consen 442 KK------VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD 515 (712)
T ss_pred Ce------eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence 65 233333447899999999999999999999999999997766433211 236899999987765
Q ss_pred ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 430 LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 430 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
.+++.+.|..|+|||.++.......-++.. ...-....|+.||++|+++++|..|+||++.
T Consensus 516 --~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-----~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 516 --EVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-----TSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred --eEEEecCCCceEEEeccchhhhhhhccccc-----CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 577778899999999977665443222211 1223556899999999999999999999984
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.9e-25 Score=199.04 Aligned_cols=243 Identities=18% Similarity=0.222 Sum_probs=192.6
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
++|.+.|.+++.+|| |++||+|+.|..|.||+..+.+.+..+ .+|.+.|.+++|-.....|+++ +.|
T Consensus 199 ~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~~t~ehv~~~--------~ghr~~V~~L~fr~gt~~lys~----s~D 265 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDCDTLEHVKVF--------KGHRGAVSSLAFRKGTSELYSA----SAD 265 (479)
T ss_pred ccccceeEEEEEcCC-CcEEEecCCCceEEEecCcccchhhcc--------cccccceeeeeeecCccceeee----ecC
Confidence 389999999999997 999999999999999999999887776 6999999999999888899999 999
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
+.|++|+++.. ..+.++.+ |.+.|.+|.... -...+-+|+.|+++++|++.... .+...++.+.+-|
T Consensus 266 rsvkvw~~~~~---s~vetlyG---Hqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees------qlifrg~~~sidc 332 (479)
T KOG0299|consen 266 RSVKVWSIDQL---SYVETLYG---HQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES------QLIFRGGEGSIDC 332 (479)
T ss_pred CceEEEehhHh---HHHHHHhC---Cccceeeechhc-ccceEEeccccceeEEEeccccc------eeeeeCCCCCeee
Confidence 99999999864 33444444 677899998886 66677777799999999995543 2333568889999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------------CccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------------ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD 446 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d 446 (540)
++|- +...+++|+.+|.|.+|++.+.++++.... ...+.+++..|.. .++++|+.+|.|++|-
T Consensus 333 v~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s---dL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 333 VAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS---DLLASGSWSGCVRLWK 408 (479)
T ss_pred EEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC---ceEEecCCCCceEEEE
Confidence 9997 457889999999999999999888765322 1167777777766 6999999999999999
Q ss_pred CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEec
Q 009203 447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDI 496 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~ 496 (540)
+..+-..+..+. .++ -.+.|++++|+++|+.|++| +....+-=|-.
T Consensus 409 i~~g~r~i~~l~---~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 409 IEDGLRAINLLY---SLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ecCCccccceee---ecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 998744333221 222 45689999999999976665 34444444433
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.6e-25 Score=215.09 Aligned_cols=275 Identities=16% Similarity=0.221 Sum_probs=218.0
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
.+|+.+-+.|+|.|+ |.+|++++.||.|++|+.... +...++. .+...|.+++.. +.+|+++ +.
T Consensus 10 yaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~--------~~g~~v~~ia~~--s~~f~~~----s~ 74 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETID--------ISGELVSSIACY--SNHFLTG----SE 74 (933)
T ss_pred hhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhh--------ccCceeEEEeec--ccceEEe----ec
Confidence 379999999999996 889999999999999998776 3333331 244556666654 5589998 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
+++|.+|.+.++.....+..+. -++.+++|+- +|.+++.|+.|-.|++.++.+... .....+|.++|.
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rft------lp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~-----~~~lrgh~apVl 142 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFT------LPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ-----EKVLRGHDAPVL 142 (933)
T ss_pred cceEEEeeCCCCCccceeeeee------ccceEEEEec-CCcEEEeecCceeEEEEeccccch-----heeecccCCcee
Confidence 9999999999887665666554 4689999999 999999999999999999988763 334467999999
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
++.|+|++++|++.+.||.|++||+.++.+..... ....+..++|+|.+ ..++....|+.|++|+..+
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~---g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG---GTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC---CeEEeeccCCeEEEEccCC
Confidence 99999999999999999999999999887643321 13456788999997 4677788899999999998
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~ 529 (540)
+....... ...+...+..++|+|+|.|||+++.||.|.|||+++ ... ..-...|.+++|.|+.+.+-..
T Consensus 220 we~~f~Lr-----~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t--~~~----~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 220 WELQFKLR-----DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT--HER----HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred ceeheeec-----ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc--chh----ccccceeEEEecCCCCCeeEEE
Confidence 88654332 233445599999999999999999999999999996 111 2224579999999998765544
Q ss_pred EcCCcE
Q 009203 530 SSDLNI 535 (540)
Q Consensus 530 ~~dg~v 535 (540)
...|..
T Consensus 289 ~~~g~~ 294 (933)
T KOG1274|consen 289 TALGTL 294 (933)
T ss_pred eecccc
Confidence 444443
No 117
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.7e-25 Score=189.72 Aligned_cols=257 Identities=17% Similarity=0.297 Sum_probs=196.7
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce-eEEeecCCCCcccceeEEEEe-CCCCCEEEEEecC
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA-CVTFLDDKPHVKGIINSIIFL-PWENPCFATGGSD 348 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~d 348 (540)
.+|.+-|+++.|.+.|+.+|+| +.|++|+|||.+...+.. +..... .|.+.|..+.|. |.-|+.+++++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtC----SsDq~vkI~d~~~~s~~W~~Ts~Wr---ah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATC----SSDQTVKIWDSTSDSGTWSCTSSWR---AHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred cCCcceeeeeeecccCceeeec----cCCCcEEEEeccCCCCceEEeeeEE---ecCCcEEEEEecCccccceEEEEecC
Confidence 5899999999999999999999 999999999976554332 223333 377889999996 4458999999999
Q ss_pred CcEEEEecCCCCC-----ccccceeecccCCcceeEEEecc--CCCEEEEEeCCCeEEEEECCCCCeee------ee---
Q 009203 349 HAVVLWSERDAED-----SWKPKALHRNLHSSAVMGVAGMQ--QKQIVLSAGADKRIIGFDAGVGRADF------KH--- 412 (540)
Q Consensus 349 g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~------~~--- 412 (540)
+++.||.-..... .|.. ........+.|+++.|.| -|-.+++++.||.+|||+.-....+. .+
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~-~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVR-RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CceeeeeecccccccccceeEE-EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 9999997632211 1111 112234668899999988 47789999999999999875432211 11
Q ss_pred -----ccCccEEEEeecCCCCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC----
Q 009203 413 -----QIESKCMSVLPNPCDFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD---- 478 (540)
Q Consensus 413 -----~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---- 478 (540)
.....+.++.|+|......+|+.|+.+ +.++||........... ..++.+|..+|+.++|.|+
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k---va~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK---VAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee---ehhcCCCCCcceeeeeccccCCc
Confidence 134567789999887666789998876 57999988765533322 2367799999999999996
Q ss_pred CCEEEEEeCCCcEEEEeccCCC------------------CcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 479 GLYITSGSADPVIHLFDIRYSA------------------NKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 479 g~~l~sg~~dg~i~iwd~~~~~------------------~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
...||+++.|| |+||.+.... -+.+..+..|.+.|+.+.|+-.|..|++.|.||+||+|+
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 25699999999 9999998310 123445678999999999999999999999999999996
No 118
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.9e-24 Score=204.95 Aligned_cols=337 Identities=12% Similarity=0.093 Sum_probs=248.6
Q ss_pred ceEEecccccccce------------EEecCCCCeEEEeccc------------------------------------hh
Q 009203 187 RKFEQKEHRELIPL------------VRTSASPATIHCHTSN------------------------------------HV 218 (540)
Q Consensus 187 ~~~~~~~~~~~v~~------------~~~~~~d~~i~~~~~~------------------------------------~~ 218 (540)
....+.+|..+|+. +++++.|+.|++|... .+
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 34556899998864 6678899999999320 23
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.||.+.|+++.|+|+ +..|++++.|.++.+|.-.+...+..-....... .|......+.-|+|+++.+++- +.
T Consensus 263 l~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~-gg~a~GF~g~lw~~n~~~ii~~----g~ 336 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV-GGSAGGFWGGLWSPNSNVIIAH----GR 336 (764)
T ss_pred hcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeecc-cccccceeeEEEcCCCCEEEEe----cc
Confidence 5699999999999995 8889999999999999887654333222221111 2445668899999999999888 89
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-----------------
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED----------------- 361 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~----------------- 361 (540)
.|..++|.......-.....+. +|.+.|.+++|+| .|.+|++.+.|.+-|+|-.-..+.
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iS---GH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c 412 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVIS---GHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTC 412 (764)
T ss_pred cCcEEEEeccCccceeeccccc---cccccceeeeecC-CCCEEEEeccccceeeecccccccceeeeccccccccccee
Confidence 9999999833221111122223 4778899999999 999999999998887764321100
Q ss_pred -------------------------------------------------------------cc-----------------
Q 009203 362 -------------------------------------------------------------SW----------------- 363 (540)
Q Consensus 362 -------------------------------------------------------------~~----------------- 363 (540)
..
T Consensus 413 ~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~ 492 (764)
T KOG1063|consen 413 LSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP 492 (764)
T ss_pred eehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence 00
Q ss_pred ---------c-------------cceeecccCCcceeEEEeccCCCEEEEEeCCC-----eEEEEECCCCCeeee-eccC
Q 009203 364 ---------K-------------PKALHRNLHSSAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVGRADFK-HQIE 415 (540)
Q Consensus 364 ---------~-------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~-~~~~ 415 (540)
. +..-...+|...|++++.+|+|+++++++... .|++|+..+-..... ..+.
T Consensus 493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs 572 (764)
T KOG1063|consen 493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS 572 (764)
T ss_pred cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence 0 00011256889999999999999999988643 599999988665553 4455
Q ss_pred ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 416 SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
-.+..+.|+|++ ++|++.+.|.++.+|...........+ ...+.|..-|+++.|+|++.+++|++.|..|.||.
T Consensus 573 LTVT~l~FSpdg---~~LLsvsRDRt~sl~~~~~~~~~e~~f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 573 LTVTRLAFSPDG---RYLLSVSRDRTVSLYEVQEDIKDEFRF---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred eEEEEEEECCCC---cEEEEeecCceEEeeeeecccchhhhh---ccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 678899999999 899999999999999986544322222 13678999999999999999999999999999999
Q ss_pred ccCCCCccccc--ccccccceeEEEEcCCC-----CEEEEEEcCCcEEEEe
Q 009203 496 IRYSANKPSQS--IRAHQKRVFKAVWHYSH-----PLLISISSDLNIGLHK 539 (540)
Q Consensus 496 ~~~~~~~~~~~--~~~h~~~i~~l~~s~~~-----~~l~s~~~dg~v~iw~ 539 (540)
......+.+.. ...+...|+.++|.|-. ..++.|-..|.|.+|+
T Consensus 647 ~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 647 EPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred ccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 98732233322 33578899999998732 3677788889999997
No 119
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=199.75 Aligned_cols=236 Identities=19% Similarity=0.254 Sum_probs=201.3
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.+.++...|....+++| +.|..+.++|..++ +.+..+.+ |.-.|+.+.|+| +...+++++.|..|+||.
T Consensus 221 gi~ald~~~s~~~ilTG----G~d~~av~~d~~s~---q~l~~~~G---h~kki~~v~~~~-~~~~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTG----GEDKTAVLFDKPSN---QILATLKG---HTKKITSVKFHK-DLDTVITASADEIIRVWS 289 (506)
T ss_pred CeeEEeecCCCCcceec----CCCCceEEEecchh---hhhhhccC---cceEEEEEEecc-chhheeecCCcceEEeec
Confidence 36677777777789998 99999999999876 55666765 677899999999 999999999999999999
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceE
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 432 (540)
...... .... ..|..+|+.+..+|.|.||++++.||+..+.|++++..+...... ....+..|+|++ .+
T Consensus 290 ~~~~s~---~~~~--~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Li 361 (506)
T KOG0289|consen 290 VPLSSE---PTSS--RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LI 361 (506)
T ss_pred cccccC---cccc--ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eE
Confidence 987664 2222 459999999999999999999999999999999999998775553 557899999998 89
Q ss_pred EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-c
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-Q 511 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~ 511 (540)
+++|..|+.|+|||+....... .+.+|.++|..++|+.+|-||+++++|+.|++||++. .+.+.++.-. .
T Consensus 362 fgtgt~d~~vkiwdlks~~~~a-------~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK--l~n~kt~~l~~~ 432 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTNVA-------KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK--LKNFKTIQLDEK 432 (506)
T ss_pred EeccCCCceEEEEEcCCccccc-------cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh--hcccceeecccc
Confidence 9999999999999999877433 5678999999999999999999999999999999997 4555555432 2
Q ss_pred cceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 512 KRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
..|.++.|.+.|.+|+.+|.|=+|++++
T Consensus 433 ~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 433 KEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 3799999999999999998887777764
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.2e-25 Score=199.81 Aligned_cols=262 Identities=14% Similarity=0.131 Sum_probs=207.1
Q ss_pred EEEEE-eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeE
Q 009203 238 LFVTS-ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACV 316 (540)
Q Consensus 238 ~l~tg-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~ 316 (540)
+++++ .....+.+|.+......... .--.++|.+++-+|+|.+|+.| +..|.|++|.+.+| ..+
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~--------~v~Pg~v~al~s~n~G~~l~ag----~i~g~lYlWelssG---~LL 116 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQY--------IVLPGPVHALASSNLGYFLLAG----TISGNLYLWELSSG---ILL 116 (476)
T ss_pred heeeecccCccccccccCchhhhhhh--------cccccceeeeecCCCceEEEee----cccCcEEEEEeccc---cHH
Confidence 45544 44567899999765543311 1234679999999999999998 89999999999998 556
Q ss_pred EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC---c-cccceeecccCCcceeEEEeccC--CCEEE
Q 009203 317 TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED---S-WKPKALHRNLHSSAVMGVAGMQQ--KQIVL 390 (540)
Q Consensus 317 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~---~-~~~~~~~~~~~~~~v~~l~~s~~--~~~l~ 390 (540)
..+.. |-..|+|+.|+- |+.+|+||+.||.|.+|++.+--. . ..........|+-+|+++...+. ...|+
T Consensus 117 ~v~~a---HYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 117 NVLSA---HYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred HHHHh---hccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence 66654 556799999999 999999999999999998743110 0 00122233569999999998764 46899
Q ss_pred EEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee--------ee-cccc
Q 009203 391 SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH--------AF-GWKQ 461 (540)
Q Consensus 391 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--------~~-~~~~ 461 (540)
+++.|.++++||+..|..+.....+..+.+++.+|.+ ..+++|+.+|.|.+.++........ .. .-..
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae---~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAE---RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EecCCceEEEEEeccceeeEEEecCCcceeEEEcccc---cEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 9999999999999999999999999999999999988 7899999999999998875431110 00 0113
Q ss_pred ccCcccc--CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203 462 ESSESQS--ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH 523 (540)
Q Consensus 462 ~~~~~~~--~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~ 523 (540)
.+.+|.+ .|+|++++-||..|++|+.||.|+|||+.+ .++++++....++|+.+.+.|-.
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S--~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS--KQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch--HHHHHHHhhhccccceeEeeccc
Confidence 5678888 999999999999999999999999999998 78888888678899999986643
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=7.9e-24 Score=193.65 Aligned_cols=290 Identities=18% Similarity=0.204 Sum_probs=223.2
Q ss_pred hccccc-CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 218 VSSLHK-RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~-~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
++.++. .-|.||+|.++ |. ++||..+|.|.||+..+.+..++. ..|.+.|.+++...+|.+|- |
T Consensus 240 ~fek~ekk~Vl~v~F~en-gd-viTgDS~G~i~Iw~~~~~~~~k~~--------~aH~ggv~~L~~lr~GtllS-G---- 304 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLEN-GD-VITGDSGGNILIWSKGTNRISKQV--------HAHDGGVFSLCMLRDGTLLS-G---- 304 (626)
T ss_pred ccccccceEEEEEEEcCC-CC-EEeecCCceEEEEeCCCceEEeEe--------eecCCceEEEEEecCccEee-c----
Confidence 455554 56999999994 65 789999999999999765543333 37899999999999997655 8
Q ss_pred CCCCeEEEEecCCCCC---------ceeEEeecCC-------------------------CCcccceeEEEEeCCCCCEE
Q 009203 297 SGDSQISVLNLNKTKG---------RACVTFLDDK-------------------------PHVKGIINSIIFLPWENPCF 342 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~---------~~~~~~~~~~-------------------------~~~~~~v~~~~~~p~~~~~l 342 (540)
+.|..|..||-+-.+. .......+++ ..|....+.++.+| +.+++
T Consensus 305 gKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~ 383 (626)
T KOG2106|consen 305 GKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQL 383 (626)
T ss_pred CccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-Chhhe
Confidence 9999999998331100 0000011110 03556788999999 88999
Q ss_pred EEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEe
Q 009203 343 ATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVL 422 (540)
Q Consensus 343 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 422 (540)
++++.|+.+++|+ ..+..|... -..++.|+.|+|.| .++.|+..|...+.|.++...+..+....++..+.
T Consensus 384 ~T~gqdk~v~lW~--~~k~~wt~~------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKLEWTKI------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVR 454 (626)
T ss_pred eeccCcceEEEcc--CCceeEEEE------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEE
Confidence 9999999999999 433333222 45788999999999 99999999999999999977777777788999999
Q ss_pred ecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC----
Q 009203 423 PNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY---- 498 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~---- 498 (540)
|+|++ .+||.|+.|+.|++|-+..........+ .-+..+|+.+.||+|+++|.+-+.|-.|..|....
T Consensus 455 ysp~G---~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-----k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ 526 (626)
T KOG2106|consen 455 YSPDG---AFLAVGSHDNHIYIYRVSANGRKYSRVG-----KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI 526 (626)
T ss_pred EcCCC---CEEEEecCCCeEEEEEECCCCcEEEEee-----eecCceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence 99998 7999999999999999987766554433 22337999999999999999999898888884330
Q ss_pred ---------------------------------------------------------CCCcccccccccccceeEEEEcC
Q 009203 499 ---------------------------------------------------------SANKPSQSIRAHQKRVFKAVWHY 521 (540)
Q Consensus 499 ---------------------------------------------------------~~~~~~~~~~~h~~~i~~l~~s~ 521 (540)
....+...+.+|.+-|++++|.-
T Consensus 527 ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~ 606 (626)
T KOG2106|consen 527 TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC 606 (626)
T ss_pred ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEee
Confidence 00112233457888999999998
Q ss_pred CCCEEEEEEcCCcEEEEeC
Q 009203 522 SHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 522 ~~~~l~s~~~dg~v~iw~l 540 (540)
+...|++.+.|..|..|++
T Consensus 607 ~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 607 KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CCceEEecCCCceEEEEEe
Confidence 8888888889999999986
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=186.94 Aligned_cols=261 Identities=16% Similarity=0.210 Sum_probs=199.9
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEeec
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHTA 295 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~~ 295 (540)
|..+|.+.|..+...- .|..|||++.|++|+|+.+...... .+.... .||.++|..++|.. .|.+||++
T Consensus 6 idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s-~ll~~L----~Gh~GPVwqv~wahPk~G~iLASc--- 76 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQS-KLLAEL----TGHSGPVWKVAWAHPKFGTILASC--- 76 (299)
T ss_pred hhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCc-eeeeEe----cCCCCCeeEEeecccccCcEeeEe---
Confidence 4568999999988887 5999999999999999999876541 122221 69999999999965 79999999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
+.||.|.||.-..+. -.....+..|.+.|++++|.|.+ |-.|++++.||.|.|.+.+.... +....+ ...|.
T Consensus 77 -sYDgkVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-w~t~ki-~~aH~ 149 (299)
T KOG1332|consen 77 -SYDGKVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-WTTSKI-VFAHE 149 (299)
T ss_pred -ecCceEEEEecCCCc----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-ccchhh-hhccc
Confidence 999999999988762 22222333578899999999843 56788999999999999887521 111111 24599
Q ss_pred cceeEEEeccC---C-----------CEEEEEeCCCeEEEEECCCCCeeee---eccCccEEEEeecCCC-CCceEEEEE
Q 009203 375 SAVMGVAGMQQ---K-----------QIVLSAGADKRIIGFDAGVGRADFK---HQIESKCMSVLPNPCD-FNLFMVQTG 436 (540)
Q Consensus 375 ~~v~~l~~s~~---~-----------~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~l~~~ 436 (540)
-.|++++|.|. | +.|++|+.|..|+||+..++.-... ..+...+..++|.|.- ....+++++
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 99999999885 4 5699999999999999998643322 3345677888888864 233689999
Q ss_pred cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
+.||+|.||-.+........ ..+......+..+.||+.|++|++++.|+.|.+|.-+.
T Consensus 230 SqDg~viIwt~~~e~e~wk~----tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKK----TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cCCCcEEEEEecCccCcccc----cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99999999988733221111 12334566899999999999999999999999997664
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.3e-25 Score=189.06 Aligned_cols=284 Identities=13% Similarity=0.189 Sum_probs=213.7
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
..|+.|++ .|.+||+|+.||.|.|||+.+......+ .+|..+|++++|++||+.|+++ +.|..|.+|
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~l--------saH~~pi~sl~WS~dgr~Llts----S~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARML--------SAHVRPITSLCWSRDGRKLLTS----SRDWSIKLW 92 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhh--------hccccceeEEEecCCCCEeeee----cCCceeEEE
Confidence 78999999 6999999999999999999987654444 6899999999999999999999 999999999
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec--cc-CCcceeEEEe
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR--NL-HSSAVMGVAG 382 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~-~~~~v~~l~~ 382 (540)
|+..|. ++..+.. .++|+...|+|.+.+.+++.-.+..-.+-++..+.. ..+.. .+ -.....+..|
T Consensus 93 Dl~~gs---~l~rirf----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h----~~Lp~d~d~dln~sas~~~f 161 (405)
T KOG1273|consen 93 DLLKGS---PLKRIRF----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH----SVLPKDDDGDLNSSASHGVF 161 (405)
T ss_pred eccCCC---ceeEEEc----cCccceeeeccccCCeEEEEEecCCcEEEEecCCce----eeccCCCccccccccccccc
Confidence 999884 4444442 578999999997777777766666666666665432 11111 11 1112233468
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee--eec
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH--AFG 458 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--~~~ 458 (540)
.+.|+++++|...|.+.++|..+.+++..+... ..+..+.++-.+ .+++..+.|..|+.|+++.-..... ...
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g---~~liiNtsDRvIR~ye~~di~~~~r~~e~e 238 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG---RFLIINTSDRVIRTYEISDIDDEGRDGEVE 238 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC---cEEEEecCCceEEEEehhhhcccCccCCcC
Confidence 899999999999999999999999887765544 355566666655 7899999999999999873211100 000
Q ss_pred cccccC--ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCcccccccccc-cceeEEEEcCCCCEEEEEEcCCc
Q 009203 459 WKQESS--ESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSANKPSQSIRAHQ-KRVFKAVWHYSHPLLISISSDLN 534 (540)
Q Consensus 459 ~~~~~~--~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~~l~s~~~dg~ 534 (540)
....+. -....-.+++||.+|.|++.|+. -..++||.... +.++..+.|.. .....+.|+|-...+++- ..|.
T Consensus 239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~--GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~ 315 (405)
T KOG1273|consen 239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI--GSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGV 315 (405)
T ss_pred hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC--cceeeeecCCchhheeecccccceeeeeec-cCCc
Confidence 000000 01123457899999999988774 46899999998 78899998877 467889999999888888 7899
Q ss_pred EEEEe
Q 009203 535 IGLHK 539 (540)
Q Consensus 535 v~iw~ 539 (540)
|+||.
T Consensus 316 v~iw~ 320 (405)
T KOG1273|consen 316 VYIWA 320 (405)
T ss_pred eEEEE
Confidence 99996
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.2e-25 Score=207.53 Aligned_cols=254 Identities=20% Similarity=0.258 Sum_probs=203.7
Q ss_pred eEEecCCCCeEEEeccc-------hhcccccCceEE-EEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCC
Q 009203 200 LVRTSASPATIHCHTSN-------HVSSLHKRKLRS-LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP 271 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-------~~~~~h~~~V~~-l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 271 (540)
++.+++.|+++++|... +.+.+|.+-|.+ ++|.+-.+-.|++|+.|.+|.+|.........++ .
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L--------k 98 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL--------K 98 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh--------h
Confidence 67888999999999652 557889999988 9988633556999999999999999998887777 6
Q ss_pred CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203 272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV 351 (540)
Q Consensus 272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 351 (540)
||+..|.++....++. +++| +.|.++++|..... ...+.+ |...|+++++.| ++ .++||+.|.+|
T Consensus 99 gH~snVC~ls~~~~~~-~iSg----SWD~TakvW~~~~l-----~~~l~g---H~asVWAv~~l~-e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 99 GHKSNVCSLSIGEDGT-LISG----SWDSTAKVWRIGEL-----VYSLQG---HTASVWAVASLP-EN-TYVTGSADKTI 163 (745)
T ss_pred ccccceeeeecCCcCc-eEec----ccccceEEecchhh-----hcccCC---cchheeeeeecC-CC-cEEeccCccee
Confidence 9999999999888877 8998 99999999987643 444554 788999999998 66 89999999999
Q ss_pred EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-eeccCccEEEEeecCCCCCc
Q 009203 352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-KHQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 430 (540)
++|.-.+. .+++ .+|.+.|+++++-++ ..+++++.||.|++|++. |.++. .+.+...+.++...+++
T Consensus 164 klWk~~~~-----l~tf--~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~-ge~l~~~~ghtn~vYsis~~~~~--- 231 (745)
T KOG0301|consen 164 KLWKGGTL-----LKTF--SGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD-GEVLLEMHGHTNFVYSISMALSD--- 231 (745)
T ss_pred eeccCCch-----hhhh--ccchhheeeeEEecC-CCeEeecCCceEEEEecc-CceeeeeeccceEEEEEEecCCC---
Confidence 99987442 3444 569999999999875 457899999999999995 55544 46677888888855444
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
..+++++.|++++||+.......+. --...|+++.+-++|. |++|++||.||||..+.
T Consensus 232 ~~Ivs~gEDrtlriW~~~e~~q~I~---------lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKDECVQVIT---------LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CeEEEecCCceEEEeecCceEEEEe---------cCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 5899999999999999883222221 1123688888887876 66777899999998873
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=206.27 Aligned_cols=291 Identities=21% Similarity=0.273 Sum_probs=206.0
Q ss_pred EEEec--CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203 229 LSLNP--VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN 306 (540)
Q Consensus 229 l~~sp--d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd 306 (540)
..|++ ...++|+.+..||.|.++|....... +....-.....|...|..+.|-|....|+++ +.|.++++||
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~ee~~lk~~~aH~nAifDl~wapge~~lVsa----sGDsT~r~Wd 128 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--LEERQLKKPLAHKNAIFDLKWAPGESLLVSA----SGDSTIRPWD 128 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcc--hhhhhhcccccccceeEeeccCCCceeEEEc----cCCceeeeee
Confidence 45543 24678999999999999998754321 1000001115799999999999966789999 9999999999
Q ss_pred cCCCCCceeEEe--ecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--c------------c---cc--
Q 009203 307 LNKTKGRACVTF--LDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED--S------------W---KP-- 365 (540)
Q Consensus 307 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~------------~---~~-- 365 (540)
+.+. .+... +- +|.+.|.+++|.|.+...|++|+.||.|.|||++-... . . ..
T Consensus 129 vk~s---~l~G~~~~~---GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 129 VKTS---RLVGGRLNL---GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eccc---eeecceeec---ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 9976 22322 33 37888999999999999999999999999999975431 0 0 00
Q ss_pred ---ceeecccCCcceeE---EEeccCCCEEEEEeC-CCeEEEEECCCCCeeee------ec---c---CccEEEEeecCC
Q 009203 366 ---KALHRNLHSSAVMG---VAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFK------HQ---I---ESKCMSVLPNPC 426 (540)
Q Consensus 366 ---~~~~~~~~~~~v~~---l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~------~~---~---~~~~~~~~~~~~ 426 (540)
..-....+...|.+ +.+..|...|++++. |+.|++||++.....+. .. . .....++..+..
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 00011224444444 555568889999888 99999999998655322 11 1 234456666655
Q ss_pred CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcccc--CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc
Q 009203 427 DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQS--ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS 504 (540)
Q Consensus 427 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~ 504 (540)
+ .+|++.+.|+.|++||+.+...... ..+.++.. .-..-..+||+.+|++|+.|...++|.+.+. ....
T Consensus 283 G---t~L~AsCtD~sIy~ynm~s~s~sP~-----~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~-e~~~ 353 (720)
T KOG0321|consen 283 G---TYLFASCTDNSIYFYNMRSLSISPV-----AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP-EAPP 353 (720)
T ss_pred C---CeEEEEecCCcEEEEeccccCcCch-----hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc-cCCh
Confidence 5 4666666699999999987553211 12222221 1122356899999999999999999999986 5667
Q ss_pred ccccccccceeEEEEcCCC-CEEEEEEcCCcEEEEeC
Q 009203 505 QSIRAHQKRVFKAVWHYSH-PLLISISSDLNIGLHKI 540 (540)
Q Consensus 505 ~~~~~h~~~i~~l~~s~~~-~~l~s~~~dg~v~iw~l 540 (540)
..+.+|.-.|++++|.|.. .-++++++|-.++||+|
T Consensus 354 ~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 354 ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred hhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 7888999999999998754 34777899999999986
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=214.57 Aligned_cols=288 Identities=17% Similarity=0.230 Sum_probs=213.7
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecCCCCCeE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~~d~~i 302 (540)
...++|+.+++ -..++.++. ..++||.+................ ..-...+..++|+. +.++||++ +.+|.|
T Consensus 40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k-qn~~~S~~DVkW~~~~~NlIAT~----s~nG~i 112 (839)
T KOG0269|consen 40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK-QNKFYSAADVKWGQLYSNLIATC----STNGVI 112 (839)
T ss_pred cccceEeecCC-cceeEEecc-cceeeEeeCcccCCcceeeecccc-cceeeehhhcccccchhhhheee----cCCCcE
Confidence 45677788886 445555553 467888776544322222111100 11112356788875 46799999 999999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
.+||+........+..+.. |...++++.|++....+|++|+.||+|++||++.... ...+ .+....|.++.|
T Consensus 113 ~vWdlnk~~rnk~l~~f~E---H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~--~~nSESiRDV~f 184 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNE---HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTF--RSNSESIRDVKF 184 (839)
T ss_pred EEEecCccccchhhhHhhh---hccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccc--cccchhhhceee
Confidence 9999986322234445554 6778999999998999999999999999999998774 2222 347788999999
Q ss_pred cc-CCCEEEEEeCCCeEEEEECCCCCe-e-eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc-eeeeec
Q 009203 383 MQ-QKQIVLSAGADKRIIGFDAGVGRA-D-FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT-EIHAFG 458 (540)
Q Consensus 383 s~-~~~~l~~~~~dg~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~ 458 (540)
+| .+..++++...|.+++||++.... . ....+.+.+.++.|+|+. .+||+|+.|+.|+|||+.+... ....+
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr---~~lATGGRDK~vkiWd~t~~~~~~~~tI- 260 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR---EWLATGGRDKMVKIWDMTDSRAKPKHTI- 260 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC---ceeeecCCCccEEEEeccCCCccceeEE-
Confidence 98 578899999999999999997544 2 234567889999999966 6999999999999999986543 22221
Q ss_pred cccccCccccCeEEEEEcCCCCE-EEEEe--CCCcEEEEeccCCCCcccccccccccceeEEEEcC-CCCEEEEEEcCCc
Q 009203 459 WKQESSESQSALINQSWSPDGLY-ITSGS--ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY-SHPLLISISSDLN 534 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~-l~sg~--~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~-~~~~l~s~~~dg~ 534 (540)
....+|.+|.|-|...+ ||+++ .|-.|+|||++.+ .-+..++..|...++.++|.. |-..|.+++.||+
T Consensus 261 ------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP-YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 261 ------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP-YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ------eecceeeeeeeccCccchhhhhhccccceEEEEeeccc-cccceeeeccCccccceeccCCCceeeEeecCccH
Confidence 12458999999998765 56554 5789999999975 668889999999999999965 4458999999998
Q ss_pred EEE
Q 009203 535 IGL 537 (540)
Q Consensus 535 v~i 537 (540)
|..
T Consensus 334 v~q 336 (839)
T KOG0269|consen 334 VLQ 336 (839)
T ss_pred HHH
Confidence 753
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.4e-23 Score=199.71 Aligned_cols=271 Identities=11% Similarity=0.072 Sum_probs=190.8
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeE-EEEeecCCCCCeEEEEecCCCCCcee
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSL-FSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
.++++++.|+.|++||+.+++....+. ++ ..+.+++|+|++..+ +++ +.++.|++||..++ ..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--------~~-~~~~~l~~~~dg~~l~~~~----~~~~~v~~~d~~~~---~~ 65 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--------VG-QRPRGITLSKDGKLLYVCA----SDSDTIQVIDLATG---EV 65 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--------CC-CCCCceEECCCCCEEEEEE----CCCCeEEEEECCCC---cE
Confidence 578899999999999998877655542 22 236789999999976 455 78899999999876 33
Q ss_pred EEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203 316 VTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA 394 (540)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 394 (540)
...+.. + ..+..++|+| +++.++ +++.++.|++||+.+...+ ..+ .+...+.+++|+|+|.++++++.
T Consensus 66 ~~~~~~---~-~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~---~~~---~~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 66 IGTLPS---G-PDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVL---AEI---PVGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EEeccC---C-CCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEE---eEe---eCCCCcceEEECCCCCEEEEEec
Confidence 333332 1 2256789999 777665 4556899999999886531 111 12344688999999999999887
Q ss_pred CC-eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEE-EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE
Q 009203 395 DK-RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMV-QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN 472 (540)
Q Consensus 395 dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~ 472 (540)
++ .+.+||..+++.............+.|+|++ .++ +++..++.|++||+.+++.....................
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG---KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG 211 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC---CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc
Confidence 65 5677899887765544444455678888887 455 555679999999999876432211000000001123457
Q ss_pred EEEcCCCCEEEE-EeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE-EcCCcEEEEeC
Q 009203 473 QSWSPDGLYITS-GSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI-SSDLNIGLHKI 540 (540)
Q Consensus 473 ~~~sp~g~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~-~~dg~v~iw~l 540 (540)
++|+|+|+++++ .+.++.|.+||+.+ ++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+
T Consensus 212 i~~s~dg~~~~~~~~~~~~i~v~d~~~--~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 212 IKLTKDGKTAFVALGPANRVAVVDAKT--YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred eEECCCCCEEEEEcCCCCeEEEEECCC--CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 899999998654 45567899999986 55544433 44579999999999998876 56899999985
No 128
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.1e-24 Score=203.23 Aligned_cols=288 Identities=18% Similarity=0.224 Sum_probs=219.3
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC--eEEEEee
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN--SLFSAHT 294 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~ 294 (540)
.++.||++.|.||...| .|.+|++|+.||+|+||.+.++.++.++.. .+.|.|++|+|.++ .||++
T Consensus 394 lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~---------d~~I~~vaw~P~~~~~vLAvA-- 461 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQF---------DSEIRSVAWNPLSDLCVLAVA-- 461 (733)
T ss_pred eeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEee---------cceeEEEEecCCCCceeEEEE--
Confidence 56899999999999999 699999999999999999999999888743 34699999999776 45554
Q ss_pred cCCCCCeEEEEecCCCC---------------------------------Cce-eEEeecCCCCcccceeEEEEeCCCCC
Q 009203 295 ADSGDSQISVLNLNKTK---------------------------------GRA-CVTFLDDKPHVKGIINSIIFLPWENP 340 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~---------------------------------~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~ 340 (540)
....+.|.+..-|. ... -+...- .|...|..+.|+. .|+
T Consensus 462 ---~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I---~~~k~i~~vtWHr-kGD 534 (733)
T KOG0650|consen 462 ---VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI---KHPKSIRQVTWHR-KGD 534 (733)
T ss_pred ---ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE---ecCCccceeeeec-CCc
Confidence 22223333322110 000 000100 2456799999999 999
Q ss_pred EEEEEecC---CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCc
Q 009203 341 CFATGGSD---HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IES 416 (540)
Q Consensus 341 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 416 (540)
+|++...+ ..|.|+++...... ..+ ....+.|.++.|+|...+|++++. ..|++||+.....+.... ...
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~sQ---~PF--~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k 608 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRKSQ---SPF--RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK 608 (733)
T ss_pred eEEEeccCCCcceEEEEeccccccc---Cch--hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe
Confidence 99987654 46889999876531 112 225577999999999888888876 589999998766555433 334
Q ss_pred cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203 417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI 496 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~ 496 (540)
.+..++.+|.+ .-|+.|+.|+.+..||+.-...+.. .+.-|...+++|+|++.-.++++|+.||++.||.-
T Consensus 609 wiS~msihp~G---Dnli~gs~d~k~~WfDldlsskPyk------~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 609 WISSMSIHPNG---DNLILGSYDKKMCWFDLDLSSKPYK------TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeeecCCC---CeEEEecCCCeeEEEEcccCcchhH------HhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 56678888877 4688999999999999987655443 55678999999999999999999999999999853
Q ss_pred cC-------CCCcccccccccccc----eeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 497 RY-------SANKPSQSIRAHQKR----VFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 497 ~~-------~~~~~~~~~~~h~~~----i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
.- +-..++..+.+|... |..+.|+|...+|+++|.||+|++|
T Consensus 680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 31 213467788888765 8899999999999999999999998
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.8e-24 Score=186.55 Aligned_cols=239 Identities=15% Similarity=0.141 Sum_probs=192.2
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
-.+.|+++.|+|.+..|+++ ++||.+++||+... .....+ .|..++.+++|.+ ...+++|+.||.|+
T Consensus 12 P~d~IS~v~f~~~~~~LLvs----sWDgslrlYdv~~~---~l~~~~----~~~~plL~c~F~d--~~~~~~G~~dg~vr 78 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVS----SWDGSLRLYDVPAN---SLKLKF----KHGAPLLDCAFAD--ESTIVTGGLDGQVR 78 (323)
T ss_pred ChhceeeEEEcCcCCcEEEE----eccCcEEEEeccch---hhhhhe----ecCCceeeeeccC--CceEEEeccCceEE
Confidence 35679999999998888888 99999999999865 122222 3678899999985 56799999999999
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceE
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (540)
.+|+.++.. ..+ ..|...|.|+.+++....+++|+.|++|++||.+.............+.++.... ..
T Consensus 79 ~~Dln~~~~----~~i--gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g-----~~ 147 (323)
T KOG1036|consen 79 RYDLNTGNE----DQI--GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG-----NR 147 (323)
T ss_pred EEEecCCcc----eee--ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC-----CE
Confidence 999999873 333 4499999999999988999999999999999999866666666666777777665 47
Q ss_pred EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--Cccccccccc
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA--NKPSQSIRAH 510 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h 510 (540)
|++|+.+..|.+||+++....... ....-...+.++++-|++.-+++++-||.|.+=.++..+ ...-..|+.|
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~-----reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQR-----RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred EEEeecCceEEEEEcccccchhhh-----ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 889999999999999987754421 223345578999999998889999999999987776521 1233455556
Q ss_pred cc---------ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 511 QK---------RVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 511 ~~---------~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.. +|++|+|+|--..|+|||.||.|.+||+
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 43 8999999999999999999999999985
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-23 Score=199.37 Aligned_cols=279 Identities=20% Similarity=0.220 Sum_probs=218.0
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
.+|++|||+.+ .+.||.+-.||.|.||++...=....... .+....|.+++|++ +..|++. +.+|.|.
T Consensus 26 s~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~------g~~drsIE~L~W~e-~~RLFS~----g~sg~i~ 93 (691)
T KOG2048|consen 26 SEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIH------GPEDRSIESLAWAE-GGRLFSS----GLSGSIT 93 (691)
T ss_pred cceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEe------cCCCCceeeEEEcc-CCeEEee----cCCceEE
Confidence 57999999995 77899999999999999987543333322 13346799999995 5567777 8999999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
-||+.+.+ ....++. ..+.|++++.+| .+..++.|+.||.+..++...+...+.. .+ ....+.|.++.|+
T Consensus 94 EwDl~~lk---~~~~~d~---~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l--~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 94 EWDLHTLK---QKYNIDS---NGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKR-SL--MRQKSRVLSLSWN 163 (691)
T ss_pred EEecccCc---eeEEecC---CCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEe-ec--ccccceEEEEEec
Confidence 99999873 3444433 357899999999 8999999999998888888776642211 11 2256899999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeee-----cc----CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 384 QQKQIVLSAGADKRIIGFDAGVGRADFKH-----QI----ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
|++..++.|+.||.|++||...+..+..+ .. ..-+.++.+-.++ .|++|...|+|++||...+....
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~----tI~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS----TIASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC----cEEEecCCceEEEEcccCcchhh
Confidence 99999999999999999999998876621 11 2234466666554 89999999999999999877533
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc--ccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK--PSQSIRAHQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
....|...|.+++..+++.++++++.|+.|.-|.......+ .......|...|.+++..++ .|++||.|
T Consensus 240 -------S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d 310 (691)
T KOG2048|consen 240 -------SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRD 310 (691)
T ss_pred -------hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEeccee
Confidence 55678999999999999999999999999999988763221 23334568888999999877 89999999
Q ss_pred CcEEE
Q 009203 533 LNIGL 537 (540)
Q Consensus 533 g~v~i 537 (540)
..+.+
T Consensus 311 ~~l~i 315 (691)
T KOG2048|consen 311 FTLAI 315 (691)
T ss_pred eEEEE
Confidence 98876
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.1e-24 Score=194.01 Aligned_cols=268 Identities=13% Similarity=0.112 Sum_probs=199.5
Q ss_pred EEeCC-ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEee
Q 009203 241 TSALD-GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFL 319 (540)
Q Consensus 241 tg~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~ 319 (540)
+++.| .++.+||+.++....++....... +|. .-+. .+.+++++. .....|.+|.+..... ..+.+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~--~~s----l~~l--~~~yllsaq---~~rp~l~vw~i~k~~~--~~q~~ 78 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ--AAS----LTAL--NNEYLLSAQ---LKRPLLHVWEILKKDQ--VVQYI 78 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCccccc--chh----hhhh--chhheeeec---ccCccccccccCchhh--hhhhc
Confidence 33444 459999999998877776542211 111 1111 235677661 4556899999875421 11121
Q ss_pred cCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEE
Q 009203 320 DDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRII 399 (540)
Q Consensus 320 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~ 399 (540)
. -.++|.+++-+| +|.+++.|+..|.|++|.+.+|.. +..+ ..|-..|+|+.|+-||.+|++|+.||.|.
T Consensus 79 v----~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~L---L~v~--~aHYQ~ITcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 79 V----LPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGIL---LNVL--SAHYQSITCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred c----cccceeeeecCC-CceEEEeecccCcEEEEEeccccH---HHHH--HhhccceeEEEEeCCCcEEEecCCCccEE
Confidence 1 257899999999 999999998999999999999986 3333 55999999999999999999999999999
Q ss_pred EEECCC---------CCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203 400 GFDAGV---------GRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA 469 (540)
Q Consensus 400 iwd~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 469 (540)
+|++.. -+++.. ..+.-.+..+...+.+.+ .++++.+.|.++++||+..+....... ....
T Consensus 149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~-~rl~TaS~D~t~k~wdlS~g~LLlti~--------fp~s 219 (476)
T KOG0646|consen 149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTN-ARLYTASEDRTIKLWDLSLGVLLLTIT--------FPSS 219 (476)
T ss_pred EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCcc-ceEEEecCCceEEEEEeccceeeEEEe--------cCCc
Confidence 998742 122222 223345556655554433 589999999999999999887655432 2457
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--------------Cccccccccccc--ceeEEEEcCCCCEEEEEEcCC
Q 009203 470 LINQSWSPDGLYITSGSADPVIHLFDIRYSA--------------NKPSQSIRAHQK--RVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 470 v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--------------~~~~~~~~~h~~--~i~~l~~s~~~~~l~s~~~dg 533 (540)
+.+++.+|-++.+++|+.+|.|.+.++.... +..+..+.+|.+ .|+|++.+-||.+|++|+.||
T Consensus 220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg 299 (476)
T KOG0646|consen 220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG 299 (476)
T ss_pred ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence 9999999999999999999999999887532 123445678888 999999999999999999999
Q ss_pred cEEEEeC
Q 009203 534 NIGLHKI 540 (540)
Q Consensus 534 ~v~iw~l 540 (540)
.|+|||+
T Consensus 300 ~VcvWdi 306 (476)
T KOG0646|consen 300 KVCVWDI 306 (476)
T ss_pred CEEEEec
Confidence 9999996
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=3.8e-24 Score=193.60 Aligned_cols=299 Identities=16% Similarity=0.203 Sum_probs=214.5
Q ss_pred hhcccccCceEEEEEecCCC-cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEee
Q 009203 217 HVSSLHKRKLRSLSLNPVNE-QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHT 294 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~-~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~ 294 (540)
.+.+-|.+.|++++|+|... +++|+|..-|.|-+||+.+.+....-.. ....|..+|.++.|+|.. ..+++.
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~----~f~~hs~~Vs~l~F~P~n~s~i~ss-- 253 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY----LFTPHSGPVSGLKFSPANTSQIYSS-- 253 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE----EeccCCccccceEecCCChhheeee--
Confidence 45678899999999999645 6899999999999999963322111111 115899999999999954 477777
Q ss_pred cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
+.||+|++-|++.+........ . .....+.++.|+. +...++.+..=|...+||++++...+... ..|.
T Consensus 254 --SyDGtiR~~D~~~~i~e~v~s~-~---~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~----~lh~ 322 (498)
T KOG4328|consen 254 --SYDGTIRLQDFEGNISEEVLSL-D---TDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENL----RLHK 322 (498)
T ss_pred --ccCceeeeeeecchhhHHHhhc-C---ccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhh----hhhh
Confidence 9999999999997633222222 1 1234577888888 55566666666799999999887432222 3377
Q ss_pred cceeEEEeccC-CCEEEEEeCCCeEEEEECCCC--Ce---eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 375 SAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVG--RA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 375 ~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
..|.+++++|. ..+|++++.|++++|||++.- +. +....+...+.+..|+|.+. .|++.+.|..|+|||..
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC---ceEeeccCCceEEeecc
Confidence 89999999994 567899999999999999862 22 44566677889999999984 49999999999999995
Q ss_pred ---CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc-ceeE-EEEcCCC
Q 009203 449 ---LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK-RVFK-AVWHYSH 523 (540)
Q Consensus 449 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~i~~-l~~s~~~ 523 (540)
..-.+...+.+......|- ......|.|+..++++|..-..|-|||-.. ++.+..+..... .|.+ ..|+|-+
T Consensus 400 ~~sa~~~p~~~I~Hn~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~--~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 400 CISAKDEPLGTIPHNNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNG--GQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred cccccCCccceeeccCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCC--CEEeeeccCccccccccceeecccc
Confidence 2222333322221111111 234568999999999999999999999886 555555543322 4555 4799998
Q ss_pred CEEEEE-EcCCcEEEE
Q 009203 524 PLLISI-SSDLNIGLH 538 (540)
Q Consensus 524 ~~l~s~-~~dg~v~iw 538 (540)
..+++| +..|.|+||
T Consensus 477 ~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIYVF 492 (498)
T ss_pred cceeccCCccceEEEE
Confidence 855554 566888888
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.2e-22 Score=193.30 Aligned_cols=281 Identities=12% Similarity=0.105 Sum_probs=198.3
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcE-EEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQL-FVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~-l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
.+.+++.|+.+.+|+.. ..+.+|. .+.+++|+|+ +.. +++++.++.|++||..+++....+. .+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------~~ 72 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLP--------SG 72 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEecc--------CC
Confidence 35566788999999754 3345554 4778999997 655 4677889999999998876544331 22
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-cEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-AVV 352 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~i~ 352 (540)
..+..++|+|+++.++++ +..++.|++||+.+. ..+..+.. ...+.+++|+| ++.++++++.++ .+.
T Consensus 73 -~~~~~~~~~~~g~~l~~~---~~~~~~l~~~d~~~~---~~~~~~~~----~~~~~~~~~~~-dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 73 -PDPELFALHPNGKILYIA---NEDDNLVTVIDIETR---KVLAEIPV----GVEPEGMAVSP-DGKIVVNTSETTNMAH 140 (300)
T ss_pred -CCccEEEECCCCCEEEEE---cCCCCeEEEEECCCC---eEEeEeeC----CCCcceEEECC-CCCEEEEEecCCCeEE
Confidence 224678999999977665 156899999999875 33444432 23467899999 999999888765 467
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE-eCCCeEEEEECCCCCeeeeecc--------CccEEEEee
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQI--------ESKCMSVLP 423 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~ 423 (540)
+||..++... .... ....+.+++|+|+|++|+++ ..++.|++||+.+++.+..... ......+.+
T Consensus 141 ~~d~~~~~~~---~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 141 FIDTKTYEIV---DNVL---VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred EEeCCCCeEE---EEEE---cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE
Confidence 7898876531 1111 22346789999999988655 4589999999998876543321 112346778
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCc
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANK 502 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~ 502 (540)
+|++. ..+++...++.+.+||+.+++..... .+...+.+++|+|+|++|+++ +.+|.|.+||+.+ ++
T Consensus 215 s~dg~--~~~~~~~~~~~i~v~d~~~~~~~~~~--------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~--~~ 282 (300)
T TIGR03866 215 TKDGK--TAFVALGPANRVAVVDAKTYEVLDYL--------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA--LK 282 (300)
T ss_pred CCCCC--EEEEEcCCCCeEEEEECCCCcEEEEE--------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC--Cc
Confidence 88773 22344456778999999876643221 123468899999999999876 4689999999998 77
Q ss_pred ccccccccccceeEEEEcC
Q 009203 503 PSQSIRAHQKRVFKAVWHY 521 (540)
Q Consensus 503 ~~~~~~~h~~~i~~l~~s~ 521 (540)
++..+... ...++++++|
T Consensus 283 ~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 283 VIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEEEEcc-cccceeEeCC
Confidence 77777754 4568888875
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.2e-23 Score=177.93 Aligned_cols=307 Identities=14% Similarity=0.137 Sum_probs=217.8
Q ss_pred eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccch-hcccc------
Q 009203 150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNH-VSSLH------ 222 (540)
Q Consensus 150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~~-~~~~h------ 222 (540)
.+.+|...|+++++..... .+++.+.|++|++|+..- ..+.|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK-------------------------------~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n 129 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGK-------------------------------KLATISGDRSIRLWDVRDFENKEHRCIRQN 129 (420)
T ss_pred hhhccCCceeeeEEcCCCc-------------------------------eeEEEeCCceEEEEecchhhhhhhhHhhcc
Confidence 4568888898888877643 577888999999997651 12222
Q ss_pred --cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC---cceeec-ccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 223 --KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS---GASLLS-TTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 223 --~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~---~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
-+.-+.+.|+||...++++.-...++++|.+...+. ...+.. ........|.-.|..+-...++.+|+++
T Consensus 130 ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa---- 205 (420)
T KOG2096|consen 130 VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA---- 205 (420)
T ss_pred ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe----
Confidence 245789999999777777777777899998754332 111111 1011224567777778888888999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC---CCCCccccceeecccC
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER---DAEDSWKPKALHRNLH 373 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~ 373 (540)
+.|..|.+|++. | +.+..+.. ....-+..+.+| +|+++++++.--.|++|.+- .|......+.+...+|
T Consensus 206 s~dt~i~lw~lk-G---q~L~~idt---nq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 206 SLDTKICLWDLK-G---QLLQSIDT---NQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred cCCCcEEEEecC-C---ceeeeecc---ccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 999999999999 5 34555443 223456788999 99999999998999999874 3332222345566889
Q ss_pred CcceeEEEeccCCCEEEEEeCCCeEEEEECCCC----C---e-----eeeeccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG----R---A-----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ 441 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~----~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 441 (540)
...|..++|+++...+++.+.||++++||++-. + . ...+..++....+..+|.+ ..|+ .+....
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g---~~lA-~s~gs~ 353 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG---DSLA-VSFGSD 353 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC---cEEE-eecCCc
Confidence 999999999999999999999999999998531 1 1 1123345566688889987 3444 445568
Q ss_pred EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 442 LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 442 v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
+++|..++++..-. .-..|...|.+++|+++|+++++++ |..++++.-..+-...+..+.+|
T Consensus 354 l~~~~se~g~~~~~------~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg~~~~V~~~~~~ 415 (420)
T KOG2096|consen 354 LKVFASEDGKDYPE------LEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPGWHSRVVKLNRE 415 (420)
T ss_pred eEEEEcccCccchh------HHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCchhhHHHHhhcc
Confidence 99999988664221 2246889999999999999999996 67788876333223344444444
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4.5e-24 Score=202.86 Aligned_cols=248 Identities=18% Similarity=0.227 Sum_probs=200.0
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec---CCCeEEEEeecCCC
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP---QGNSLFSAHTADSG 298 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~---~~~~l~s~~~~~~~ 298 (540)
-..+|.+++.+|+ |++||+|..-|+++||++...+....+ ..|...|.|+.|+. ..++||++ +.
T Consensus 458 ~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~--------eAHesEilcLeyS~p~~~~kLLASa----sr 524 (1080)
T KOG1408|consen 458 SRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFM--------EAHESEILCLEYSFPVLTNKLLASA----SR 524 (1080)
T ss_pred cccceEEEEECCC-cceecccCccCceEEEEehhhhhhhhe--------ecccceeEEEeecCchhhhHhhhhc----cC
Confidence 3458999999995 999999999999999999887655444 68999999999985 34689999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC--CEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN--PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
|..|.|||+... ...++++.+ |...|+++.|.- ++ ..+++++.|..|.+--.+.......+..-........
T Consensus 525 dRlIHV~Dv~rn--y~l~qtld~---HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 525 DRLIHVYDVKRN--YDLVQTLDG---HSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred CceEEEEecccc--cchhhhhcc---cccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence 999999999755 345556664 788899999987 55 6789999998875433321110000111111113456
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec----cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ----IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
+++++..|..+++++++.|..|+|||+.+++....+. .++..+.+..+|.+ .|+++.+.|.++.+||..++++
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg---iY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG---IYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc---cEEEEeecCCceEEEEeccchh
Confidence 8999999999999999999999999999999876543 45788899999988 7999999999999999999998
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
... ..+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 676 vA~-------m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 676 VAQ-------MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhh-------hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 664 457999999999999999999999999999999874
No 136
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=2.6e-23 Score=180.58 Aligned_cols=306 Identities=15% Similarity=0.156 Sum_probs=214.2
Q ss_pred hhcccccCceEEEEEec----CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC----CCe
Q 009203 217 HVSSLHKRKLRSLSLNP----VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ----GNS 288 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~sp----d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~ 288 (540)
++..+|+.+|..++|++ +....+|+.+.+ .+.||.......+..+..-.+ +.|......++|+-+ ..+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D---~d~~Esfytcsw~yd~~~~~p~ 107 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYAD---EDHDESFYTCSWSYDSNTGNPF 107 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccC---CCCCcceEEEEEEecCCCCCee
Confidence 45678999999999985 224567777654 799998876553333332222 357778888999764 337
Q ss_pred EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203 289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL 368 (540)
Q Consensus 289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 368 (540)
+|++ +.-|.|+|.|+.++ .+...+.+ |...|+.+.|+|.+.+++++++.|.+|++|++++..++ ..+
T Consensus 108 la~~----G~~GvIrVid~~~~---~~~~~~~g---hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv---~Vf 174 (385)
T KOG1034|consen 108 LAAG----GYLGVIRVIDVVSG---QCSKNYRG---HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV---AVF 174 (385)
T ss_pred EEee----cceeEEEEEecchh---hhccceec---cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE---EEe
Confidence 8888 89999999999986 45555665 67889999999988899999999999999999999873 222
Q ss_pred e-cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee------eccCc------------c---EEEEeecCC
Q 009203 369 H-RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK------HQIES------------K---CMSVLPNPC 426 (540)
Q Consensus 369 ~-~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~------------~---~~~~~~~~~ 426 (540)
. ..+|.+.|.++.|+++|.+|++++.|.+|++|++...+.... +.... + ...+.-++.
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 2 267999999999999999999999999999999984322100 00000 0 000000000
Q ss_pred ---CCCceEEEEEcCCCeEEEEECCCCcceeeee-------ccccccCccccCeEEE--EEcCCCCEEEEEeCCCcEEEE
Q 009203 427 ---DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF-------GWKQESSESQSALINQ--SWSPDGLYITSGSADPVIHLF 494 (540)
Q Consensus 427 ---~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-------~~~~~~~~~~~~v~~~--~~sp~g~~l~sg~~dg~i~iw 494 (540)
..-+.++++-+-++.|..|.....+...+.. .....+.-....|+-+ +|+|-+++||.|...|.|++|
T Consensus 255 DCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 255 DCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 0112578888889999999883221111100 0011222233445544 567778999999999999999
Q ss_pred eccCCCCcccccccc--cccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 495 DIRYSANKPSQSIRA--HQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 495 d~~~~~~~~~~~~~~--h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
|+++.+.....++.. ....|...+|+.||.+|+..++|++|.-||
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 999843322333332 244799999999999999999999999997
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.5e-25 Score=218.83 Aligned_cols=292 Identities=15% Similarity=0.277 Sum_probs=217.2
Q ss_pred EEEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcc--eeecccccCCCCCCCCceeEEEecCCCe----EE
Q 009203 227 RSLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGA--SLLSTTDCLSPKHRRWPEDIAWHPQGNS----LF 290 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~h~~~V~~~~~~~~~~~----l~ 290 (540)
-.++|+|++..++|+|. .+.++-||.+....... ...... .-....+.++|.+.|.. |+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-----~s~~rF~kL~W~~~g~~~~GlIa 84 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-----QSSNRFNKLAWGSYGSHSHGLIA 84 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-----cccccceeeeecccCCCccceee
Confidence 45788887433666653 34556666654333222 111111 22345689999998776 77
Q ss_pred EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 291 SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
.| ..||.|.+||...-........+.....|.+.|..+.|++..+++|++|+.||.|.|||+...+.. .....
T Consensus 85 GG----~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP---~~~~~ 157 (1049)
T KOG0307|consen 85 GG----LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP---FTPGS 157 (1049)
T ss_pred cc----ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC---CCCCC
Confidence 77 999999999987621112222333333578999999999977779999999999999999986642 22212
Q ss_pred ccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCC---CeEE
Q 009203 371 NLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPG---RQLR 443 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d---g~v~ 443 (540)
....+.|.+++|+.. ...|++++.+|.+.|||++..+.+...... ..+..+.|+|++.. .+++++.| -.|.
T Consensus 158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--ql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--QLLVASGDDSAPVIQ 235 (1049)
T ss_pred CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce--eeeeecCCCCCceeE
Confidence 335678999999864 456788899999999999998776654433 45789999999876 34444333 3699
Q ss_pred EEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~ 522 (540)
+||++....... .+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++ ++.+..+....+++..+.|+|.
T Consensus 236 lWDlR~assP~k------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t--gEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 236 LWDLRFASSPLK------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT--GEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred eecccccCCchh------hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC--ceEeeecCCCCcceeeeeecCC
Confidence 999997665554 457899999999999966 8899999999999999998 8899999888889999999998
Q ss_pred CC-EEEEEEcCCcEEEEeC
Q 009203 523 HP-LLISISSDLNIGLHKI 540 (540)
Q Consensus 523 ~~-~l~s~~~dg~v~iw~l 540 (540)
.. .++.++-||.|-|+.+
T Consensus 308 ~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 308 NPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred Ccchhhhheeccceeeeee
Confidence 86 7888999999999864
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.3e-24 Score=206.92 Aligned_cols=244 Identities=18% Similarity=0.253 Sum_probs=194.1
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCC---CCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCCCCC
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR---GSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDS 300 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~ 300 (540)
.+..|.|+.-..++|||++..|.|.+||+... +.+..+ ..|+..|+++.|++.. .+|++| +.||
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f--------~EH~Rs~~~ldfh~tep~iliSG----SQDg 156 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF--------NEHERSANKLDFHSTEPNILISG----SQDG 156 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh--------hhhccceeeeeeccCCccEEEec----CCCc
Confidence 35567777545789999999999999999872 222222 5799999999999854 578888 9999
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
+|++||++..+. ..++.+ ....|..++|+|..+..|+++...|.+++||++.... .......|.++|.|+
T Consensus 157 ~vK~~DlR~~~S---~~t~~~---nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r----~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 157 TVKCWDLRSKKS---KSTFRS---NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR----CEKKLTAHNGPVLCL 226 (839)
T ss_pred eEEEEeeecccc---cccccc---cchhhhceeeccCCCceEEEecCCceEEEeeccCchh----HHHHhhcccCceEEE
Confidence 999999997633 333333 3567999999998999999999999999999998763 334446799999999
Q ss_pred EeccCCCEEEEEeCCCeEEEEECCCCCe--eeeeccCccEEEEeecCCCCCceEEEEEc--CCCeEEEEECCCCcceeee
Q 009203 381 AGMQQKQIVLSAGADKRIIGFDAGVGRA--DFKHQIESKCMSVLPNPCDFNLFMVQTGT--PGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~ 456 (540)
.|+|++.+|++|+.|+.|+|||..+++. +........+..+.|-|... ..|++++ .|..|+|||++..-.+..
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--~hLAtcsmv~dtsV~VWDvrRPYIP~~- 303 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--YHLATCSMVVDTSVHVWDVRRPYIPYA- 303 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--chhhhhhccccceEEEEeeccccccce-
Confidence 9999999999999999999999987554 45566677888999999876 3667665 477899999986655444
Q ss_pred eccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccC
Q 009203 457 FGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.+..|...++.++|.. |-..|.+++.||.|..-.+.+
T Consensus 304 -----t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 304 -----TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred -----eeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 5578999999999965 445688999999887655554
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=5.1e-23 Score=193.65 Aligned_cols=316 Identities=13% Similarity=0.167 Sum_probs=218.7
Q ss_pred CCceEEecccccccceEEecCCCCeEEEeccch-----------hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEc
Q 009203 185 TKRKFEQKEHRELIPLVRTSASPATIHCHTSNH-----------VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQL 253 (540)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~~-----------~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~ 253 (540)
+++......+.+.-..++.+..|+.|.+++... -...|.+.|..+.|.| +...|++++.|.++++||+
T Consensus 51 pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDV 129 (720)
T ss_pred CCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeee
Confidence 333334445555556788888899999987651 2468999999999999 7899999999999999999
Q ss_pred CCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCc----e-------------e
Q 009203 254 QSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGR----A-------------C 315 (540)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~----~-------------~ 315 (540)
...++...-.. .||...|.+++|.|+.. .|++| +.||.|.|||+.-.... . .
T Consensus 130 k~s~l~G~~~~------~GH~~SvkS~cf~~~n~~vF~tG----gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 130 KTSRLVGGRLN------LGHTGSVKSECFMPTNPAVFCTG----GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ccceeecceee------cccccccchhhhccCCCcceeec----cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 98876554211 59999999999999765 67777 99999999999754210 0 0
Q ss_pred EEee----cCCCCcccc----eeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeec---ccC---CcceeEE
Q 009203 316 VTFL----DDKPHVKGI----INSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHR---NLH---SSAVMGV 380 (540)
Q Consensus 316 ~~~~----~~~~~~~~~----v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~---~~~---~~~v~~l 380 (540)
...+ .....+... |+.+.| . |...||+++. |+.|+|||++.....++...... ..| .-.+.++
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 0000 000012223 444555 4 7788888887 99999999998765443322211 112 3457788
Q ss_pred EeccCCCEEEEEeCCCeEEEEECCCCCee--eeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 381 AGMQQKQIVLSAGADKRIIGFDAGVGRAD--FKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
.....|.+|++.+.|+.|++||+..-... ..+. ....-..-..+|++ .++++|+.|...++|.+.+.+....
T Consensus 278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~---~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD---CSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC---ceEeccCCCcceeeeeecCccCChh
Confidence 88778899888888999999999874432 1111 11222333456666 7999999999999999998775443
Q ss_pred eeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCC------------cccccccccccceeEEEEcCC
Q 009203 456 AFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSAN------------KPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~------------~~~~~~~~h~~~i~~l~~s~~ 522 (540)
.+.+|.-.|++++|.|.. .-+++++.|..++||++.++-. .....+++|.-.+..+.|+-.
T Consensus 355 ------~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~ 428 (720)
T KOG0321|consen 355 ------LLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLR 428 (720)
T ss_pred ------hhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcccccccccccccc
Confidence 457899999999998843 3466779999999999975210 122344566555555555433
No 140
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=4.3e-23 Score=193.76 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=119.6
Q ss_pred eCCCeEEEEECCCCCe-----eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203 393 GADKRIIGFDAGVGRA-----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ 467 (540)
Q Consensus 393 ~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 467 (540)
+..|.|-||+++.... +-....+..++.+.|+|.+. ..|++++.||.|++|.+..+............+..|.
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~--~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDD--ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCCh--HHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 4467889999876332 23355667889999999876 4799999999999999987664443333344678899
Q ss_pred cCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 468 SALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 468 ~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
..|+++.|+| -...|++++.|-+|++||+.+ .+....+.+|.+.|.+++|+|||+.+++.|.||+|+||+
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~--~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLAN--AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhh--hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999999999 457899999999999999998 788889999999999999999999999999999999985
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2e-22 Score=173.72 Aligned_cols=268 Identities=14% Similarity=0.197 Sum_probs=195.2
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEeec
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHTA 295 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~~ 295 (540)
+..+|.+-|.|+.|.+ .|+.+|+|+.|++|+|||..+........... ..|.+.|..+.|.+ -|+.+|++
T Consensus 8 i~s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W----rah~~Si~rV~WAhPEfGqvvA~c--- 79 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW----RAHDGSIWRVVWAHPEFGQVVATC--- 79 (361)
T ss_pred cccCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeE----EecCCcEEEEEecCccccceEEEE---
Confidence 3468999999999999 59999999999999999987666545554444 47899999999954 58999999
Q ss_pred CCCCCeEEEEecCCCC----C--ceeEEeecCCCCcccceeEEEEeCC-CCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203 296 DSGDSQISVLNLNKTK----G--RACVTFLDDKPHVKGIINSIIFLPW-ENPCFATGGSDHAVVLWSERDAEDSWKPKAL 368 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~----~--~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 368 (540)
+.|+++.||.-.... + -.....+.. ..+.|+.+.|.|. -|-.|++++.||.++||+.-....+......
T Consensus 80 -S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D---srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 80 -SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD---SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred -ecCCceeeeeecccccccccceeEEEEEeec---CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 999999999763111 1 112223332 3577999999984 3677899999999999987654332211111
Q ss_pred e--------cccCCcceeEEEeccC---CCEEEEEeCC-----CeEEEEECCCCCe--ee---eeccCccEEEEeecCCC
Q 009203 369 H--------RNLHSSAVMGVAGMQQ---KQIVLSAGAD-----KRIIGFDAGVGRA--DF---KHQIESKCMSVLPNPCD 427 (540)
Q Consensus 369 ~--------~~~~~~~v~~l~~s~~---~~~l~~~~~d-----g~i~iwd~~~~~~--~~---~~~~~~~~~~~~~~~~~ 427 (540)
. ...+..+..|+.|+|. ..+|++|+.+ +.++||....+.. .. .......+..++|.|.-
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 1 1126677889999873 4678888775 4788887765432 11 13456788899999863
Q ss_pred -CCceEEEEEcCCCeEEEEECCCCcc-----------eee--eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009203 428 -FNLFMVQTGTPGRQLRLYDIRLRQT-----------EIH--AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHL 493 (540)
Q Consensus 428 -~~~~~l~~~~~dg~v~i~d~~~~~~-----------~~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~i 493 (540)
....+|++++.|| |+||.+..... ... .+.....+.+|.+.|..+.|+-.|..|++.|.||.|++
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence 3346889999999 99999984210 000 01112357899999999999999999999999999999
Q ss_pred EeccC
Q 009203 494 FDIRY 498 (540)
Q Consensus 494 wd~~~ 498 (540)
|...-
T Consensus 315 Wkany 319 (361)
T KOG2445|consen 315 WKANY 319 (361)
T ss_pred hhhhh
Confidence 98764
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4e-23 Score=176.75 Aligned_cols=286 Identities=16% Similarity=0.207 Sum_probs=210.6
Q ss_pred cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc---------------
Q 009203 152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN--------------- 216 (540)
Q Consensus 152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~--------------- 216 (540)
..|.+.|+++.+.+.. .+.+.++..|+.|.+||.+
T Consensus 40 r~HgGsvNsL~id~te------------------------------grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~ 89 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTE------------------------------GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK 89 (397)
T ss_pred ccCCCccceeeecccc------------------------------ceEEeecCCCccEEEEEeccccchhhccceehee
Confidence 4688889988888772 1356778888888888664
Q ss_pred -----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC---Ce
Q 009203 217 -----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG---NS 288 (540)
Q Consensus 217 -----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~---~~ 288 (540)
.--.+|.-.|..+.|-|-+.-++.+++.|.+++|||.++.+....+. -++.|.+-+|+|-. .+
T Consensus 90 c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~---------me~~VYshamSp~a~sHcL 160 (397)
T KOG4283|consen 90 CIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK---------MEGKVYSHAMSPMAMSHCL 160 (397)
T ss_pred eeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee---------cCceeehhhcChhhhcceE
Confidence 11367888999999999667799999999999999999987655552 34557788888843 36
Q ss_pred EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC-C------
Q 009203 289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE-D------ 361 (540)
Q Consensus 289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~------ 361 (540)
||+| ..+-.|++.|+.+| .+...+.+ |.+.|.++.|+|...-.|++|+.||.|++||++... +
T Consensus 161 iA~g----tr~~~VrLCDi~SG---s~sH~LsG---Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~ 230 (397)
T KOG4283|consen 161 IAAG----TRDVQVRLCDIASG---SFSHTLSG---HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ 230 (397)
T ss_pred EEEe----cCCCcEEEEeccCC---cceeeecc---ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence 7777 89999999999997 56778876 778899999999555567999999999999998652 1
Q ss_pred --ccccceee-cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----C--ccEEEEeecCCCCCce
Q 009203 362 --SWKPKALH-RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----E--SKCMSVLPNPCDFNLF 431 (540)
Q Consensus 362 --~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~ 431 (540)
...++.+. ...|.+.|++++|+.+|.++++++.|..+++|+..+|+....... . ....-+. +.+. .
T Consensus 231 hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s---~ 306 (397)
T KOG4283|consen 231 HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDS---D 306 (397)
T ss_pred ccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-eccc---c
Confidence 01122222 356899999999999999999999999999999998765322110 0 1111111 1111 1
Q ss_pred EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
.++.--.++.+.++++-.+.... .+..|-..|.|..+-|+-....+|..|+.|..|-..
T Consensus 307 vfv~~p~~~~lall~~~sgs~ir-------~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 307 VFVLFPNDGSLALLNLLEGSFVR-------RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEEEecCCeEEEEEccCceEEE-------eeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 22222234777777777666433 335566789999999998999999999999999874
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=3.9e-23 Score=182.67 Aligned_cols=253 Identities=19% Similarity=0.228 Sum_probs=188.1
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC-------------CceeEEeecCCCCcccceeEEEEeCC
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK-------------GRACVTFLDDKPHVKGIINSIIFLPW 337 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~p~ 337 (540)
.+|.+.++.+.-++-++-.++++. +..|.|.|||+...- ....+..+. .|.+.=++++|+|.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~asw--se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~---ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASW--SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN---GHKGEGYGLDWSPI 222 (440)
T ss_pred cccccccceeeecccCCcceeeee--cccCcEEEEEchhhhhhhcCccccccccccCceEEec---ccCccceeeecccc
Confidence 477888888888776653333323 899999999987431 112233333 35677889999996
Q ss_pred CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCC---Ceeeeec
Q 009203 338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVG---RADFKHQ 413 (540)
Q Consensus 338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~---~~~~~~~ 413 (540)
....|++|..-+.|++|...++.- ........+|+..|..++|||. ...|++|+.||+|+|||+|.+ .++....
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W--~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSW--KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred cccccccCccccceEeeeeccCce--eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence 666788988889999999998653 3333334569999999999995 568899999999999999988 4566677
Q ss_pred cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEE
Q 009203 414 IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIH 492 (540)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~ 492 (540)
+.+.+..+.|+... .+|++|+.||+++|||++..+... ....++-|..+|++|.|+|. ...|++++.|..|.
T Consensus 301 h~sDVNVISWnr~~---~lLasG~DdGt~~iwDLR~~~~~~----pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 301 HNSDVNVISWNRRE---PLLASGGDDGTLSIWDLRQFKSGQ----PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred cCCceeeEEccCCc---ceeeecCCCceEEEEEhhhccCCC----cceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 77889999999876 489999999999999999755331 22356789999999999995 56788889999999
Q ss_pred EEeccCCCC------c--------cccccccc--ccceeEEEEcCCCC-EEEEEEcCCcEEEE
Q 009203 493 LFDIRYSAN------K--------PSQSIRAH--QKRVFKAVWHYSHP-LLISISSDLNIGLH 538 (540)
Q Consensus 493 iwd~~~~~~------~--------~~~~~~~h--~~~i~~l~~s~~~~-~l~s~~~dg~v~iw 538 (540)
|||+..... . +-+-+-.| ...|..+.|++.-+ +|++.+.|| +.||
T Consensus 374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999974211 0 11112234 33688899998764 888888888 3444
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=182.74 Aligned_cols=247 Identities=15% Similarity=0.153 Sum_probs=190.2
Q ss_pred ceeEEEec-------CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeec---------------CCCCcccceeEEEE
Q 009203 277 PEDIAWHP-------QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLD---------------DKPHVKGIINSIIF 334 (540)
Q Consensus 277 V~~~~~~~-------~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~ 334 (540)
..|++|.. .|+++|.| ..+..|.|||+.-.....+...+. .-.+|++.|.+++|
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiG----tmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIG----TMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEe----ccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 45777743 36799999 999999999987543222222222 01257788899999
Q ss_pred eCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCC-eeeee
Q 009203 335 LPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGR-ADFKH 412 (540)
Q Consensus 335 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 412 (540)
+....+.|++|+.|.+|.+||+.++++ ...+ ..|...|.++.|+| ...+|++|+.|++|.+.|.|... .-...
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p---~~s~--~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w 326 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKP---KSSI--THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW 326 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCc---ceeh--hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence 876678999999999999999999997 3333 35899999999988 46789999999999999999532 23446
Q ss_pred ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcE
Q 009203 413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVI 491 (540)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i 491 (540)
...+.+-.+.|+|... ..++++..||+|+-+|++....+.. ++..|..+|.++++++.- .+|++++.|+.|
T Consensus 327 k~~g~VEkv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vw------t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V 398 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVW------TLKAHDDEISGLSVNIQTPGLLSTASTDKVV 398 (463)
T ss_pred EeccceEEEEecCCCc--eeEEEecCCceEEeeecCCCCCcee------EEEeccCCcceEEecCCCCcceeeccccceE
Confidence 6778888899998765 4788899999999999998875554 457899999999998753 578899999999
Q ss_pred EEEeccCCCCcccccccccccceeEEEEcCCCC-EEEEEEcCCcEEEEeC
Q 009203 492 HLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLHKI 540 (540)
Q Consensus 492 ~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw~l 540 (540)
.+|++.....+.+..-...-+...|+++.|+-. .++.||..+.++|||+
T Consensus 399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 999998643433333222334577888888775 6788888888999996
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=8.1e-23 Score=186.92 Aligned_cols=258 Identities=16% Similarity=0.206 Sum_probs=209.2
Q ss_pred CCCCeEEEeccch---------h-cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 205 ASPATIHCHTSNH---------V-SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 205 ~~d~~i~~~~~~~---------~-~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
..-+.|++|+..+ + .....+-|.++.+.|| |+.|++|+.-.++.|||+..... .+.... +.-.
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd-grtLivGGeastlsiWDLAapTp--rikael----tssa 509 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD-GRTLIVGGEASTLSIWDLAAPTP--RIKAEL----TSSA 509 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC-CceEEeccccceeeeeeccCCCc--chhhhc----CCcc
Confidence 3467899997651 1 1223467899999996 99999999999999999987543 221111 1122
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
-...+++.+||.+..+++ ..||.|.|||+... ..++.|.+ |.+.+.||.+++ +|..|-||+-|.+|+-|
T Consensus 510 paCyALa~spDakvcFsc----csdGnI~vwDLhnq---~~VrqfqG---htDGascIdis~-dGtklWTGGlDntvRcW 578 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSC----CSDGNIAVWDLHNQ---TLVRQFQG---HTDGASCIDISK-DGTKLWTGGLDNTVRCW 578 (705)
T ss_pred hhhhhhhcCCccceeeee----ccCCcEEEEEcccc---eeeecccC---CCCCceeEEecC-CCceeecCCCccceeeh
Confidence 346788999999999999 89999999999974 66777776 677799999999 99999999999999999
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 434 (540)
|++++.. +......+.|.++.++|++.+|++|-.++.+.+........-..+.++.-++++.|.+.+ ++++
T Consensus 579 Dlregrq------lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cG---kwfv 649 (705)
T KOG0639|consen 579 DLREGRQ------LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG---KWFV 649 (705)
T ss_pred hhhhhhh------hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccC---ceee
Confidence 9999864 112235678999999999999999999999999988877767778888999999999988 7999
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
+.+.|+.+..|...-+...+.. ...+.|.++.+|.|.++|++|+.|....||.+.
T Consensus 650 StGkDnlLnawrtPyGasiFqs--------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQS--------KESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred ecCchhhhhhccCccccceeec--------cccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 9999999999998876654432 235689999999999999999999999888763
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=196.10 Aligned_cols=247 Identities=12% Similarity=0.184 Sum_probs=196.5
Q ss_pred CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203 272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV 351 (540)
Q Consensus 272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 351 (540)
.|...-+.++|.|+|.+|+++ +.||.|++|+..... .....+.. +...|.+++. .+++|++|+.+++|
T Consensus 11 aht~G~t~i~~d~~gefi~tc----gsdg~ir~~~~~sd~--e~P~ti~~---~g~~v~~ia~---~s~~f~~~s~~~tv 78 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTC----GSDGDIRKWKTNSDE--EEPETIDI---SGELVSSIAC---YSNHFLTGSEQNTV 78 (933)
T ss_pred hccCceEEEEEcCCCCEEEEe----cCCCceEEeecCCcc--cCCchhhc---cCceeEEEee---cccceEEeeccceE
Confidence 688888999999999999999 999999999987651 11111111 3456788877 55699999999999
Q ss_pred EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCc
Q 009203 352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 430 (540)
.+|.+..++. -..+.+ .+-++++++|+-+|++++.|+.|-.|++.++........ ..+...+.++.++|.+
T Consensus 79 ~~y~fps~~~---~~iL~R--ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~--- 150 (933)
T KOG1274|consen 79 LRYKFPSGEE---DTILAR--FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG--- 150 (933)
T ss_pred EEeeCCCCCc---cceeee--eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC---
Confidence 9999998874 112322 567899999999999999999999999999988666544 6678899999999988
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR- 508 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~- 508 (540)
.+||+.+.||.|++||+.++......-+........ ...++.++|+|+|..++..+.|+.|.+|+... ......+.
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~--we~~f~Lr~ 228 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG--WELQFKLRD 228 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC--ceeheeecc
Confidence 799999999999999999877544333322222222 34567799999988888888999999999998 45555444
Q ss_pred -ccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 509 -AHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 509 -~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+...+..+.|+|.|+|||+++.||.|.|||.
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 34455999999999999999999999999985
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.6e-24 Score=206.34 Aligned_cols=256 Identities=14% Similarity=0.210 Sum_probs=213.0
Q ss_pred CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 235 NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 235 ~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
+..+++.+..+-.+++|+.... ..|...|.++..-..++.++.| +.|..+-+|.+... .
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~~--------------~~hsaav~~lk~~~s~r~~~~G----g~~~k~~L~~i~kp---~ 61 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTREF--------------VAHSAAVGCLKIRKSSRSLVTG----GEDEKVNLWAIGKP---N 61 (825)
T ss_pred cccccceeeeeeccccccchhh--------------hhhhhhhceeeeeccceeeccC----CCceeeccccccCC---c
Confidence 3455666666777888887642 2577778888887778889998 99999999998764 3
Q ss_pred eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203 315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA 394 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 394 (540)
.+..+.+ |..+|.++.|++ ...+|++|+.+|+|++||+..... +..+ .+|...+.++.|+|-+.+++.|+.
T Consensus 62 ~i~S~~~---hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~---vrtL--tgh~~~~~sv~f~P~~~~~a~gSt 132 (825)
T KOG0267|consen 62 AITSLTG---HESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKI---VRTL--TGHLLNITSVDFHPYGEFFASGST 132 (825)
T ss_pred hhheeec---cCCcceeeecCc-chhhhcccccCCceeeeehhhhhh---hhhh--hccccCcceeeeccceEEeccccc
Confidence 3444554 788999999999 889999999999999999998875 3444 569999999999999999999999
Q ss_pred CCeEEEEECCCCCeeeeeccCcc-EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE
Q 009203 395 DKRIIGFDAGVGRADFKHQIESK-CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ 473 (540)
Q Consensus 395 dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~ 473 (540)
|+.+++||.+...+.+.+..+.. +..+.|+|++ ++++.|+.|..++|||+..++... ++..|.+.+..+
T Consensus 133 dtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G---r~v~~g~ed~tvki~d~~agk~~~-------ef~~~e~~v~sl 202 (825)
T KOG0267|consen 133 DTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG---RWVASGGEDNTVKIWDLTAGKLSK-------EFKSHEGKVQSL 202 (825)
T ss_pred cccceehhhhccCceeeecCCcceeEEEeecCCC---ceeeccCCcceeeeeccccccccc-------cccccccccccc
Confidence 99999999997777776655444 4567899998 899999999999999998776432 667899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203 474 SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 474 ~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
.|+|..-.+++|+.|+++++||+++ ...+.........|.+++|+|++..+.+|..+
T Consensus 203 e~hp~e~Lla~Gs~d~tv~f~dlet--fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVRFWDLET--FEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCchhhhhccCCCCceeeeeccce--eEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999999999999999999999997 67777777677889999999999988887654
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=189.72 Aligned_cols=274 Identities=14% Similarity=0.135 Sum_probs=214.9
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV 304 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v 304 (540)
.|..++|.|| |..|+.+. +..+.|||.+.+....++ .+|.+.|.+++|+.||+.+++| +.|..|.+
T Consensus 14 ci~d~afkPD-GsqL~lAA-g~rlliyD~ndG~llqtL--------KgHKDtVycVAys~dGkrFASG----~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAA-GSRLLVYDTSDGTLLQPL--------KGHKDTVYCVAYAKDGKRFASG----SADKSVII 79 (1081)
T ss_pred chheeEECCC-CceEEEec-CCEEEEEeCCCccccccc--------ccccceEEEEEEccCCceeccC----CCceeEEE
Confidence 8999999998 44444443 347999999999888777 6999999999999999999999 99999999
Q ss_pred EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203 305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 384 (540)
|.-.-. ..++. .|.+.|.|+.|+| -...|++++- ...-+|....... ........|.+++|..
T Consensus 80 W~~klE---G~LkY-----SH~D~IQCMsFNP-~~h~LasCsL-sdFglWS~~qK~V-------~K~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 80 WTSKLE---GILKY-----SHNDAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQKSV-------SKHKSSSRIICCSWTN 142 (1081)
T ss_pred eccccc---ceeee-----ccCCeeeEeecCc-hHHHhhhcch-hhccccChhhhhH-------HhhhhheeEEEeeecC
Confidence 986532 11222 3678899999999 8888999886 3467888876542 1122456789999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCc--eEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 385 QKQIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNL--FMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 385 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
||++++.|-.+|+|.+-+-......... ....++.+++|+|....+ ..+++.....++.+|.+.......
T Consensus 143 DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk----- 217 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK----- 217 (1081)
T ss_pred CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc-----
Confidence 9999999999999999865433333322 245788899999865433 578888888889988887433210
Q ss_pred ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
...-.-...|+.+.++|.|+..|+.|+.+.+|--+ +..+.++.....+|+.++..|++++++.|+.||+|-.|+
T Consensus 218 ---~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~---GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 218 ---DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD---GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred ---cccCCCCchhheeccCCcEEEEccCCCceEEEeec---CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 01122356789999999999999999999999877 677888877788999999999999999999999998876
Q ss_pred C
Q 009203 540 I 540 (540)
Q Consensus 540 l 540 (540)
+
T Consensus 292 l 292 (1081)
T KOG1538|consen 292 L 292 (1081)
T ss_pred h
Confidence 4
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.9e-24 Score=203.12 Aligned_cols=246 Identities=20% Similarity=0.294 Sum_probs=205.7
Q ss_pred CeEEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC
Q 009203 208 ATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN 287 (540)
Q Consensus 208 ~~i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 287 (540)
..+++|+.. -+..|...|.|+..-. .++.+++|+.|-.+-+|.+.....+..+ .+|..+|.++.|+++..
T Consensus 14 t~Lr~~~~~-~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~--------~~hespIeSl~f~~~E~ 83 (825)
T KOG0267|consen 14 TKLRVWDTR-EFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSL--------TGHESPIESLTFDTSER 83 (825)
T ss_pred eccccccch-hhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhhee--------eccCCcceeeecCcchh
Confidence 344566543 2457888999998855 5899999999999999999877666554 69999999999999999
Q ss_pred eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccce
Q 009203 288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA 367 (540)
Q Consensus 288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 367 (540)
+|++| +.+|+|++||+..+ ..++.+.+ |...+.++.|+| -+.++++|+.|+.+++||++...| .
T Consensus 84 Llaag----sasgtiK~wDleeA---k~vrtLtg---h~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc-----~ 147 (825)
T KOG0267|consen 84 LLAAG----SASGTIKVWDLEEA---KIVRTLTG---HLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGC-----S 147 (825)
T ss_pred hhccc----ccCCceeeeehhhh---hhhhhhhc---cccCcceeeecc-ceEEeccccccccceehhhhccCc-----e
Confidence 99998 99999999999976 44666665 678899999999 999999999999999999997665 2
Q ss_pred eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203 368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD 446 (540)
Q Consensus 368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d 446 (540)
..+.+|...|..+.|+|+|.+++.++.|..++|||+..|+.+..+. +...+.++.|+|.+ .+++.|+.|++|++||
T Consensus 148 ~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e---~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 148 HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE---VLLAPGSSDRTVRFWD 224 (825)
T ss_pred eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchh---hhhccCCCCceeeeec
Confidence 3335599999999999999999999999999999999999887766 56788888899987 6889999999999999
Q ss_pred CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203 447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP 489 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg 489 (540)
+++.+... ........|.+.+|+|+|..+++|....
T Consensus 225 letfe~I~-------s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 225 LETFEVIS-------SGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cceeEEee-------ccCCccCCceeeeecCCceeeecCchhh
Confidence 99766433 2233456899999999999999886554
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=6.2e-22 Score=180.92 Aligned_cols=291 Identities=13% Similarity=0.153 Sum_probs=211.4
Q ss_pred EEecCCCCeEEEeccc-----hhccccc--CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HVSSLHK--RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~~~~h~--~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
+.+++...++++||.. -.+..|+ -.|.++.|+..+.-.+++.+.|..+++|.-... ..++...... .|
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k~--~g- 79 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRKL--TG- 79 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CCccceeecc--cc-
Confidence 3445556678888764 1122222 349999999742223344467888999976543 1122111111 11
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
+.-.|++......++++| +..++|+|||+.. ..+.+.+.+ |.+.|+++.++- ...+|++++..|.|.|
T Consensus 80 -d~~~Cv~~~s~S~y~~sg----G~~~~Vkiwdl~~---kl~hr~lkd---h~stvt~v~YN~-~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 80 -DNAFCVACASQSLYEISG----GQSGCVKIWDLRA---KLIHRFLKD---HQSTVTYVDYNN-TDEYIASVSDGGDIII 147 (673)
T ss_pred -chHHHHhhhhcceeeecc----CcCceeeehhhHH---HHHhhhccC---CcceeEEEEecC-CcceeEEeccCCcEEE
Confidence 123455555555899999 9999999999995 355566665 678899999998 8889999999999999
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCc
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 430 (540)
..+.++.. ...+ ..+....|.-+.|+|..+ +|.+++.+|.|.+||+....+.+. ..+..++..++|+|.+.
T Consensus 148 h~~~t~~~---tt~f-~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne-- 221 (673)
T KOG4378|consen 148 HGTKTKQK---TTTF-TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE-- 221 (673)
T ss_pred EecccCcc---ccce-ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc--
Confidence 99998864 1222 223345677899998665 456788999999999987666543 34567788899999875
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
.+|++.+.|..|.+||.+....... + ....+.+.++|+++|.+|+.|...|.|..||++.. ..++.++..|
T Consensus 222 ~l~vsVG~Dkki~~yD~~s~~s~~~-l-------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~-k~Pv~v~sah 292 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRSQASTDR-L-------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST-KAPVAVRSAH 292 (673)
T ss_pred ceEEEecccceEEEeecccccccce-e-------eecCCcceeeecCCceEEEeecCCceEEEEecccC-CCCceEeeec
Confidence 5889999999999999986543221 1 12457899999999999999999999999999974 6789999999
Q ss_pred ccceeEEEEcCCC
Q 009203 511 QKRVFKAVWHYSH 523 (540)
Q Consensus 511 ~~~i~~l~~s~~~ 523 (540)
...|++++|-|.-
T Consensus 293 ~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 DASVTRVAFQPSP 305 (673)
T ss_pred ccceeEEEeeecc
Confidence 9999999997653
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=177.48 Aligned_cols=268 Identities=13% Similarity=0.173 Sum_probs=198.0
Q ss_pred eEEecCCCCeEEEec--cc-----hhcccccCceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCC
Q 009203 200 LVRTSASPATIHCHT--SN-----HVSSLHKRKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP 271 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~--~~-----~~~~~h~~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 271 (540)
.+-++..|+++++|. ++ +.+.--.-+|.+.+|.|+ |. .+++++.......||+.+.+...-- .. .
T Consensus 227 lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~rrky~ysyDle~ak~~k~~-~~-----~ 299 (514)
T KOG2055|consen 227 LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN-GHSVIFTSGRRKYLYSYDLETAKVTKLK-PP-----Y 299 (514)
T ss_pred eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC-CceEEEecccceEEEEeecccccccccc-CC-----C
Confidence 456677788888883 33 112333578999999996 66 9999999999999999887642211 11 1
Q ss_pred CC-CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203 272 KH-RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA 350 (540)
Q Consensus 272 ~h-~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 350 (540)
|+ ...+.....++++++|+.. +..|.|.+....++ ..+..+.. .+.|..++|+. ++..|++++.+|.
T Consensus 300 g~e~~~~e~FeVShd~~fia~~----G~~G~I~lLhakT~---eli~s~Ki----eG~v~~~~fsS-dsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 300 GVEEKSMERFEVSHDSNFIAIA----GNNGHIHLLHAKTK---ELITSFKI----EGVVSDFTFSS-DSKELLASGGTGE 367 (514)
T ss_pred CcccchhheeEecCCCCeEEEc----ccCceEEeehhhhh---hhhheeee----ccEEeeEEEec-CCcEEEEEcCCce
Confidence 33 3456778889999999999 99999999998886 44665553 56799999998 8899998888999
Q ss_pred EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC------CCeeee-eccCccEEEEee
Q 009203 351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV------GRADFK-HQIESKCMSVLP 423 (540)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~-~~~~~~~~~~~~ 423 (540)
|++||++...+ ...+... ..-.-++++.+++|.+|++|+..|.|.|||..+ .+++.. ......+.++.|
T Consensus 368 V~v~nl~~~~~---~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F 443 (514)
T KOG2055|consen 368 VYVWNLRQNSC---LHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF 443 (514)
T ss_pred EEEEecCCcce---EEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence 99999999875 2222221 222346777789999999999999999999754 223332 345677889999
Q ss_pred cCCCCCceEEEEEcC--CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 424 NPCDFNLFMVQTGTP--GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
+++. .+|+.++. +..+++-.+.+.... ..+. .....-+.|+|++|||.|.+||.|..+|.+.+|.+.
T Consensus 444 n~d~---qiLAiaS~~~knalrLVHvPS~TVF-sNfP---~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 444 NHDA---QILAIASRVKKNALRLVHVPSCTVF-SNFP---TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred Ccch---hhhhhhhhccccceEEEeccceeee-ccCC---CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9988 56666654 567888877654421 1111 223344579999999999999999999999999875
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=6.8e-22 Score=179.18 Aligned_cols=274 Identities=17% Similarity=0.177 Sum_probs=200.7
Q ss_pred ceEEecCCCCeEEEeccc---------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC
Q 009203 199 PLVRTSASPATIHCHTSN---------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL 269 (540)
Q Consensus 199 ~~~~~~~~d~~i~~~~~~---------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~ 269 (540)
..|+.|..-+.|-+|+.. ..+..|.++|.++.|+|.+...+++.++||+|++-|++......-+ ..
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~--s~--- 275 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVL--SL--- 275 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHh--hc---
Confidence 567888888999999772 4578999999999999987889999999999999999875432211 11
Q ss_pred CCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203 270 SPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH 349 (540)
Q Consensus 270 ~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 349 (540)
..-...+.++.|+.+...++.+ ..=|.+.+||.+++... ...+.. |...|.+|+++|....+|+|++.|+
T Consensus 276 -~~d~~~fs~~d~~~e~~~vl~~----~~~G~f~~iD~R~~~s~--~~~~~l---h~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 276 -DTDNIWFSSLDFSAESRSVLFG----DNVGNFNVIDLRTDGSE--YENLRL---HKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred -CccceeeeeccccCCCccEEEe----ecccceEEEEeecCCcc--chhhhh---hhcccceeecCCCCchheeecccCc
Confidence 0123446778888887777777 66779999999987431 222222 4558999999998899999999999
Q ss_pred cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC----CCCeeeeecc--C----ccEE
Q 009203 350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG----VGRADFKHQI--E----SKCM 419 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~--~----~~~~ 419 (540)
+++|||++.-..... ..+....|...|.+..|||.+..|++.+.|..|+|||.. ...+.....+ . -...
T Consensus 346 T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f 424 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF 424 (498)
T ss_pred ceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch
Confidence 999999997654322 245556799999999999998889999999999999984 2222222222 1 2334
Q ss_pred EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE-EEEcCCCCEEE-EEeCCCcEEEEecc
Q 009203 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN-QSWSPDGLYIT-SGSADPVIHLFDIR 497 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~-sg~~dg~i~iwd~~ 497 (540)
...|.|+. .++++|..-..|-|||-..++...... ......|.+ ..|+|-+..++ .|+..|.|+||--.
T Consensus 425 KA~W~P~~---~li~vg~~~r~IDv~~~~~~q~v~el~------~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 425 KAAWDPDY---NLIVVGRYPRPIDVFDGNGGQMVCELH------DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred hheeCCCc---cEEEEeccCcceeEEcCCCCEEeeecc------CccccccccceeecccccceeccCCccceEEEEecC
Confidence 56788866 689999988899999998777433211 111223444 48999887454 45567888888654
No 153
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9e-22 Score=174.79 Aligned_cols=304 Identities=12% Similarity=0.132 Sum_probs=218.8
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.+|.+.|+++.|+. ++++|++|+.|..+++|++...-... ...........|...|.|++|.....++++| ..
T Consensus 52 ~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k-~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG----~~ 125 (609)
T KOG4227|consen 52 VREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRK-TPKPIGVMEHPHRSNIFSLEFDLENRFLYSG----ER 125 (609)
T ss_pred hhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhc-CCCCceeccCccccceEEEEEccCCeeEecC----CC
Confidence 579999999999999 59999999999999999986432111 1111222224577899999999999999999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
+++|...|+.+. +.+.++.. ....+.|+.+..+| ..+.|++.+.++.|.+||.+.......+... ........
T Consensus 126 ~~~VI~HDiEt~---qsi~V~~~-~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--AN~~~~F~ 198 (609)
T KOG4227|consen 126 WGTVIKHDIETK---QSIYVANE-NNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLP--ANSGKNFY 198 (609)
T ss_pred cceeEeeecccc---eeeeeecc-cCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeee--cCCCccce
Confidence 999999999986 33444432 22356899999999 6888999999999999999986632111111 23455678
Q ss_pred EEEeccC-CCEEEEEeCCCeEEEEECCCCCe-eeee----cc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 379 GVAGMQQ-KQIVLSAGADKRIIGFDAGVGRA-DFKH----QI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 379 ~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-~~~~----~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
++.|+|. ..+|++.+..+-+-+||.+.... ++.. .. ....++..|+|.+ ..+.+--....-.+||+-.
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G---~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG---NQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC---CeehhhhccCCCEEeeeec
Confidence 8899985 46778888888999999987543 2211 11 2234678899987 4455555555666788877
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC---C------------------ccccccc
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA---N------------------KPSQSIR 508 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~---~------------------~~~~~~~ 508 (540)
..+.+..+.+...-.-....+.+++|--|. -+++|+.+-.|++|.+.... + ..+..++
T Consensus 276 ~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr 354 (609)
T KOG4227|consen 276 QRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR 354 (609)
T ss_pred ccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence 666554433221111123356677886554 49999999999999986310 0 1244678
Q ss_pred ccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 509 AHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 509 ~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
+|..-++.+.|+|...+|++.|....++||.
T Consensus 355 GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 355 GHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccccccceeecCCcceEeccchhhheeccc
Confidence 9999999999999999999999999999994
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=169.05 Aligned_cols=289 Identities=15% Similarity=0.138 Sum_probs=204.8
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcce----eeccccc-CCCCCCCCceeEEEe-------cCCCeEEEEe
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGAS----LLSTTDC-LSPKHRRWPEDIAWH-------PQGNSLFSAH 293 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~----~~~~~~~-~~~~h~~~V~~~~~~-------~~~~~l~s~~ 293 (540)
...+.|+|| |..|++-+.|..+++|++........ ....... ..-.....|...+|- |+..++++.
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s- 129 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS- 129 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec-
Confidence 456889997 88999999999999999864321111 0000000 000123457778885 566788888
Q ss_pred ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec-CCCCCccccceee---
Q 009203 294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE-RDAEDSWKPKALH--- 369 (540)
Q Consensus 294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~--- 369 (540)
+.+.-|++||.-+|+.+...+....... -....+++|+| ||..|++|. ..+|++||+ +.|.. .......
T Consensus 130 ---sr~~PIh~wdaftG~lraSy~~ydh~de-~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~-c~vy~t~~~~ 202 (406)
T KOG2919|consen 130 ---SRDQPIHLWDAFTGKLRASYRAYDHQDE-YTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRD-CPVYTTVTKG 202 (406)
T ss_pred ---cccCceeeeeccccccccchhhhhhHHh-hhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCC-Ccchhhhhcc
Confidence 9999999999999854333333221110 11256899999 999998766 589999999 44432 1111111
Q ss_pred cccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcC-CCeEEEEE
Q 009203 370 RNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTP-GRQLRLYD 446 (540)
Q Consensus 370 ~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~v~i~d 446 (540)
..+..+-+.+++|+|.. ..+++|+....+-||.-..+.++.. ...++.++.+.|.+++ ..|++|+. |..|..||
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG---n~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG---NKLFSGARKDDKILCWD 279 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc---CeecccccCCCeEEEEe
Confidence 23346789999999954 5889999988888888877777655 5677889999999998 46666654 77899999
Q ss_pred CCCCcceeeeeccccccCcccc---CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203 447 IRLRQTEIHAFGWKQESSESQS---ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH 523 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~ 523 (540)
++....++..+ ..|.. .-.-....|+|++|++|+.||.|++||+... +..+..+..|...++.++++|--
T Consensus 280 iR~~~~pv~~L------~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~-gn~~sv~~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 280 IRYSRDPVYAL------ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL-GNEVSVTGNYSDTVNGVSLNPIM 352 (406)
T ss_pred ehhccchhhhh------hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-CCcccccccccccccceecCccc
Confidence 99766555432 23333 2223455789999999999999999999975 56677888899999999999999
Q ss_pred CEEEEEEcCC
Q 009203 524 PLLISISSDL 533 (540)
Q Consensus 524 ~~l~s~~~dg 533 (540)
+++++++...
T Consensus 353 pilatssGqr 362 (406)
T KOG2919|consen 353 PILATSSGQR 362 (406)
T ss_pred ceeeeccCce
Confidence 9999887553
No 155
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=7e-21 Score=162.88 Aligned_cols=292 Identities=14% Similarity=0.216 Sum_probs=206.7
Q ss_pred ceEEEEEe--cCCCcEEEEEeC----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-----eEEEEe
Q 009203 225 KLRSLSLN--PVNEQLFVTSAL----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-----SLFSAH 293 (540)
Q Consensus 225 ~V~~l~~s--pd~~~~l~tg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-----~l~s~~ 293 (540)
++.++.|+ |+.+.+||.|+. .+.|.|-.+..... .+..... ..|..+++.+.|.|+.. +||++
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--e~~~~a~---fd~~YP~tK~~wiPd~~g~~pdlLATs- 119 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--ELVEDAN---FDHPYPVTKLMWIPDSKGVYPDLLATS- 119 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--ceeccCC---CCCCCCccceEecCCccccCcchhhcc-
Confidence 57788887 555778999873 46677776653322 2221111 37889999999999863 55553
Q ss_pred ecCCCCCeEEEEecCCCCCcee-EEeec--CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 294 TADSGDSQISVLNLNKTKGRAC-VTFLD--DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 294 ~~~~~d~~i~vwd~~~~~~~~~-~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
+..+++|.+........ ...+. ...++.+++++..|+..+.++|.+++-|-+..|||++++.... . ....
T Consensus 120 -----~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-v-kTQL 192 (364)
T KOG0290|consen 120 -----SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-V-KTQL 192 (364)
T ss_pred -----cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-e-eeEE
Confidence 66799999885322111 11111 1224567899999998899999999999999999999973211 1 1122
Q ss_pred ccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCe---eeeecc-CccEEEEeecCCCCCceEEEEEcC-CCeEEE
Q 009203 371 NLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRA---DFKHQI-ESKCMSVLPNPCDFNLFMVQTGTP-GRQLRL 444 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-dg~v~i 444 (540)
-.|...|..++|..++ +.+++++.||.+|+||++.... ++.... ......++|++.+++ ++++-.. ...|.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn--ymATf~~dS~~V~i 270 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN--YMATFAMDSNKVVI 270 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch--HHhhhhcCCceEEE
Confidence 4599999999998754 6789999999999999997554 333223 456788999988775 6666444 457999
Q ss_pred EECCCCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCC----cccccccccccceeEEEE
Q 009203 445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIRYSAN----KPSQSIRAHQKRVFKAVW 519 (540)
Q Consensus 445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~h~~~i~~l~~ 519 (540)
.|++....+.. .+.+|.+.|++++|.|. ...|++++.|..+.|||+..... .++..+. -.+.|+.+.|
T Consensus 271 LDiR~P~tpva------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~W 343 (364)
T KOG0290|consen 271 LDIRVPCTPVA------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQW 343 (364)
T ss_pred EEecCCCccee------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeee
Confidence 99997765544 66899999999999995 57899999999999999987422 2333333 4568999999
Q ss_pred cCCC-CEEEEEEcCCcEEEEe
Q 009203 520 HYSH-PLLISISSDLNIGLHK 539 (540)
Q Consensus 520 s~~~-~~l~s~~~dg~v~iw~ 539 (540)
++.- ..++.+ .+.++.|-+
T Consensus 344 s~~~~Dwiai~-~~kkleiLR 363 (364)
T KOG0290|consen 344 SSSQPDWIAIC-FGKKLEILR 363 (364)
T ss_pred cccCCCEEEEE-ecCeeeEEe
Confidence 9755 455554 456666544
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.7e-21 Score=180.46 Aligned_cols=244 Identities=16% Similarity=0.208 Sum_probs=198.7
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
.+|.++||+.+.+.||.+ -.+|.|-+|++..+ ..+...+.+ +....|.+++|++ +..|++.+.+|.|.-|
T Consensus 26 s~I~slA~s~kS~~lAvs----Rt~g~IEiwN~~~~--w~~~~vi~g--~~drsIE~L~W~e--~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVS----RTDGNIEIWNLSNN--WFLEPVIHG--PEDRSIESLAWAE--GGRLFSSGLSGSITEW 95 (691)
T ss_pred cceEEEEEeccCCceeee----ccCCcEEEEccCCC--ceeeEEEec--CCCCceeeEEEcc--CCeEEeecCCceEEEE
Confidence 558999999999999999 99999999999975 444555555 3467799999995 5577788889999999
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCce
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 431 (540)
|+.+.+. ........+.|++++.+|.+..++.|+.||.+..++...++..+.. ...+.+.++.|+|++ .
T Consensus 96 Dl~~lk~-----~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~---~ 167 (691)
T KOG2048|consen 96 DLHTLKQ-----KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG---T 167 (691)
T ss_pred ecccCce-----eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc---c
Confidence 9999874 3333457789999999999999999999998888888887776553 235889999999998 5
Q ss_pred EEEEEcCCCeEEEEECCCCcceee-eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 432 MVQTGTPGRQLRLYDIRLRQTEIH-AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
.+++|+.||.|++||...+..... ..+.....++...-|+++.|-.+ ..|++|.+.|.|.+||... +.++..+..|
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~--gTLiqS~~~h 244 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF--GTLIQSHSCH 244 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC--cchhhhhhhh
Confidence 699999999999999998774331 11111111223445788888755 4799999999999999998 8899999999
Q ss_pred ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 511 QKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+-|.+++.++++.+++++|.|+.|.-+.
T Consensus 245 ~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 245 DADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred hcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 99999999999999999999999987664
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=1.8e-21 Score=174.03 Aligned_cols=290 Identities=17% Similarity=0.221 Sum_probs=202.7
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcce-eecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGAS-LLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
..+|..+.|.+.+...||||+.|..|+||.+........ ....+......|...|+++.|+|+|+.|++| +.+|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg----~D~g~ 88 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASG----GDGGE 88 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeec----CCCce
Confidence 368999999985444999999999999999876554331 1112222336899999999999999999999 99999
Q ss_pred EEEEecC--------C-----CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203 302 ISVLNLN--------K-----TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL 368 (540)
Q Consensus 302 i~vwd~~--------~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 368 (540)
|.+|-.. + .........+. .|...|..++|+| ++.++++++.|..+++||+..+.. ..
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr---~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l-----~~ 159 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLR---GHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQL-----LA 159 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEec---ccccchhhhhccC-CCceeeeeeccceEEEEEecccee-----Ee
Confidence 9999776 2 11111222333 3677899999999 999999999999999999999974 22
Q ss_pred ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec------------------------cCccEEEEeec
Q 009203 369 HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ------------------------IESKCMSVLPN 424 (540)
Q Consensus 369 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------~~~~~~~~~~~ 424 (540)
....|...+..++|.|-++++++-+.|...+.+++.....+..+. .......++|+
T Consensus 160 ~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT 239 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT 239 (434)
T ss_pred eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence 335699999999999999999999999877777765433322111 01223345667
Q ss_pred CCCCCceEEEEEcC---------CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC------------------
Q 009203 425 PCDFNLFMVQTGTP---------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP------------------ 477 (540)
Q Consensus 425 ~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------------------ 477 (540)
|++ .++++.+. -+..++|+-.....+... +..-..++..+.|+|
T Consensus 240 PdG---~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~------lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 240 PDG---SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR------LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred CCC---cEEEcccceeeeCCceeeceeEeeccccccCceee------cCCCCcceEEEEeeeeEEEeccccccccccccc
Confidence 776 45665432 133455655544333322 222333445555544
Q ss_pred CCCEEEEEeCCCcEEEEeccCCCCccccccc-ccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 478 DGLYITSGSADPVIHLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 478 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
-+-.+|.+ ....|+|||.++ ..++.... -|-..|++++|++||.+|+..|.||...+
T Consensus 311 yrlvfaiA-t~~svyvydtq~--~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 311 YRLVFAIA-TKNSVYVYDTQT--LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cceEEEEe-ecceEEEecccc--ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 12234444 456699999997 55555443 58889999999999999999999997654
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3.8e-22 Score=173.47 Aligned_cols=252 Identities=19% Similarity=0.256 Sum_probs=197.5
Q ss_pred cccCceEEEEEecC---CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecC
Q 009203 221 LHKRKLRSLSLNPV---NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTAD 296 (540)
Q Consensus 221 ~h~~~V~~l~~spd---~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~ 296 (540)
.|......++|+-| +..+||.|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|+. ++++++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~--------~ghG~sINeik~~p~~~qlvls~---- 154 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY--------RGHGGSINEIKFHPDRPQLVLSA---- 154 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce--------eccCccchhhhcCCCCCcEEEEe----
Confidence 57888899999864 3458999999999999999998877777 6899999999999976 578888
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc------------
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK------------ 364 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------ 364 (540)
+.|..|++|++.+. .|+..+.+..+|.+.|.++.|++ ++.+|++++.|.+|++|++...+....
T Consensus 155 SkD~svRlwnI~~~---~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 155 SKDHSVRLWNIQTD---VCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred cCCceEEEEeccCC---eEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 99999999999986 88999999999999999999999 999999999999999999984331000
Q ss_pred ----------ccee-ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCee-------------eeecc---Cc
Q 009203 365 ----------PKAL-HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRAD-------------FKHQI---ES 416 (540)
Q Consensus 365 ----------~~~~-~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~-------------~~~~~---~~ 416 (540)
+..+ ....|...|-|+.|- |+++++-+-++.|..|.... ++.+ ..+.. ..
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 0111 234577888888885 68999999999999998821 1111 11111 23
Q ss_pred cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee-eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
..+.++++|.. .+|+.|...|.|.+||++....... .+ ........|...+||.||.+|+...+|+.|.-||
T Consensus 309 Wfirf~~d~~~---~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 309 WFIRFAFDPWQ---KMLALGNQSGKVYVWDLDNNEPPKCTTL----THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EEEEEeecHHH---HHHhhccCCCcEEEEECCCCCCccCceE----EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 34566677765 7899999999999999998765321 11 1122345788999999999999999999999998
Q ss_pred cc
Q 009203 496 IR 497 (540)
Q Consensus 496 ~~ 497 (540)
..
T Consensus 382 rv 383 (385)
T KOG1034|consen 382 RV 383 (385)
T ss_pred ee
Confidence 65
No 159
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=1.2e-20 Score=161.38 Aligned_cols=259 Identities=18% Similarity=0.295 Sum_probs=186.7
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCC-------ceEEEEEcCCCCCcc-----eeecccccCCCCCCCCceeEEEec
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALD-------GVIRLWQLQSRGSGA-----SLLSTTDCLSPKHRRWPEDIAWHP 284 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~d-------g~v~iw~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~~~~~~ 284 (540)
.+|..|.+.|+.++-+|.+.++|+|+..+ -.+.||.+....... ......+ ..+-+.|.|+.|.|
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld---teavg~i~cvew~P 133 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD---TEAVGKINCVEWEP 133 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC---HHHhCceeeEEEcC
Confidence 56788999999999999878888888653 247899987654321 1111111 23445899999999
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC-CCCCEEEEEecCCcEEEEecCCCCCcc
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP-WENPCFATGGSDHAVVLWSERDAEDSW 363 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 363 (540)
++..|++- .|..|.+|++..+..............+....++-+|+| .+++.+++. .|+++..||+++..+.+
T Consensus 134 ns~klasm-----~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 134 NSDKLASM-----DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN 207 (370)
T ss_pred CCCeeEEe-----ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc
Confidence 99999996 599999999997743211111111122455688889998 467777665 47999999999887644
Q ss_pred ccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203 364 KPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQL 442 (540)
Q Consensus 364 ~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v 442 (540)
.+. ..|...|..+.|+|+-+ +|++|+.||.|++||.+..+.
T Consensus 208 sI~----dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---------------------------------- 249 (370)
T KOG1007|consen 208 SIE----DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---------------------------------- 249 (370)
T ss_pred chh----hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc----------------------------------
Confidence 333 55888899999999754 456677777777777774331
Q ss_pred EEEECCCCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCC---------------------
Q 009203 443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIRYSA--------------------- 500 (540)
Q Consensus 443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~--------------------- 500 (540)
++ .++.+|...|+++.|+|. ..+|++|+.|..|.+|......
T Consensus 250 ----------pv------~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 250 ----------PV------QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE 313 (370)
T ss_pred ----------cc------cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence 11 255789999999999995 5678899999999999765311
Q ss_pred ------CcccccccccccceeEEEEcCCCC-EEEEEEcCCcEEEE
Q 009203 501 ------NKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLH 538 (540)
Q Consensus 501 ------~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw 538 (540)
...+.++..|.+.|.+++|+.-.+ .+|+-++||.|.|=
T Consensus 314 r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 314 RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred hcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence 012346678999999999998776 57888999998874
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=176.09 Aligned_cols=234 Identities=18% Similarity=0.265 Sum_probs=183.0
Q ss_pred ceEEecCCCCeEEEeccc--------hh------------------cccccCceEEEEEecCCCcEEEEEeCCceEEEEE
Q 009203 199 PLVRTSASPATIHCHTSN--------HV------------------SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQ 252 (540)
Q Consensus 199 ~~~~~~~~d~~i~~~~~~--------~~------------------~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~ 252 (540)
..+|.|..|..|.||+.. .+ ..+|++.|.+|+|+-...++||+||.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 457888889999999774 11 2379999999999987778999999999999999
Q ss_pred cCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeE
Q 009203 253 LQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINS 331 (540)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 331 (540)
+.++++..++ ..|.+.|.++.|+|. ..+|++| +.|++|.+.|.+..... -..+. ..+.|-.
T Consensus 273 ~~~g~p~~s~--------~~~~k~Vq~l~wh~~~p~~LLsG----s~D~~V~l~D~R~~~~s--~~~wk----~~g~VEk 334 (463)
T KOG0270|consen 273 VDTGKPKSSI--------THHGKKVQTLEWHPYEPSVLLSG----SYDGTVALKDCRDPSNS--GKEWK----FDGEVEK 334 (463)
T ss_pred cCCCCcceeh--------hhcCCceeEEEecCCCceEEEec----cccceEEeeeccCcccc--CceEE----eccceEE
Confidence 9999988777 568899999999995 5688898 99999999999853111 11111 1356999
Q ss_pred EEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCee-
Q 009203 332 IIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRAD- 409 (540)
Q Consensus 332 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~- 409 (540)
++|.|.....+++++.||+|+-+|++.... .......|.+.|.+++++.. -.++++++.|+.|++|++......
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGK----PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCC----ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 999997888899999999999999998742 23334569999999999864 467889999999999999765442
Q ss_pred -eeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 410 -FKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 410 -~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
..+... +...+++++|+.+ .+++.|+..+.++|||+.+.......
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a--~~la~GG~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVA--FTLAFGGEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred cccccccccceeecccCCCcc--eEEEecCccceEEEeecccChhHHHh
Confidence 222222 2355677777654 48899999999999999877654443
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=7.4e-21 Score=165.08 Aligned_cols=243 Identities=19% Similarity=0.252 Sum_probs=181.7
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC------------ceeEEeecCCCCcccceeEEEEe-------CC
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG------------RACVTFLDDKPHVKGIINSIIFL-------PW 337 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~-------p~ 337 (540)
...+.|+|||..|++- +.|..+.+|++..... ...++.. ....|...+|- |
T Consensus 52 ~kgckWSPDGSciL~~----sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-----eg~tvydy~wYs~M~s~qP- 121 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSL----SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-----EGETVYDYCWYSRMKSDQP- 121 (406)
T ss_pred hccceeCCCCceEEee----cccCeeeEEecChhhcccCCCCccccccceeEEec-----cCCEEEEEEeeeccccCCC-
Confidence 3469999999999998 9999999999864211 0111121 23557777775 5
Q ss_pred CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEEC-CCCCeee------
Q 009203 338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA-GVGRADF------ 410 (540)
Q Consensus 338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~------ 410 (540)
+..++++.+.+.-|++||.-+++.............-....+++|+|||..|++|. ..+|++||+ +.|.-..
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 77889999999999999999998633333222111122446899999999998765 579999999 4444311
Q ss_pred --eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-
Q 009203 411 --KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA- 487 (540)
Q Consensus 411 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~- 487 (540)
.....+-+.+++++|.+. ..++.|+....+-||.-..+.... .+-+|.+.|+.+.|.++|+.|++|+.
T Consensus 201 ~~k~gq~giisc~a~sP~~~--~~~a~gsY~q~~giy~~~~~~pl~-------llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDS--KTLAVGSYGQRVGIYNDDGRRPLQ-------LLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred cccccccceeeeeeccCCCC--cceeeecccceeeeEecCCCCcee-------eecccCCCeeeEEeccCcCeecccccC
Confidence 122245566788999774 389999999999999887766543 34589999999999999999999975
Q ss_pred CCcEEEEeccCCCCccccccccccc-ceeEEEE--cCCCCEEEEEEcCCcEEEEeC
Q 009203 488 DPVIHLFDIRYSANKPSQSIRAHQK-RVFKAVW--HYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 488 dg~i~iwd~~~~~~~~~~~~~~h~~-~i~~l~~--s~~~~~l~s~~~dg~v~iw~l 540 (540)
|-.|..||++.. ..++..+..|.+ .-..|.| .|+|++|++|+.||.|++||+
T Consensus 272 ~dkIl~WDiR~~-~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 272 DDKILCWDIRYS-RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred CCeEEEEeehhc-cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 678999999985 678888888866 3444555 688999999999999999995
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-21 Score=178.18 Aligned_cols=249 Identities=14% Similarity=0.219 Sum_probs=195.5
Q ss_pred eEEecCCCCeEEEec--cc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203 200 LVRTSASPATIHCHT--SN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK 272 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~--~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 272 (540)
.+++...|..+++|. +. .+-+.-.+.-.||+.... ..++++|+..+.|+|||+....+.+.+ .+
T Consensus 49 vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~l--------kd 119 (673)
T KOG4378|consen 49 VVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFL--------KD 119 (673)
T ss_pred EEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhc--------cC
Confidence 477778899999993 22 111111124456666553 578999999999999999854433333 58
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
|...|+++.++....+||++ +..|.|.|..+.++.. ...+.. .....|.-+.|+|....+|.+++.+|.|.
T Consensus 120 h~stvt~v~YN~~DeyiAsv----s~gGdiiih~~~t~~~---tt~f~~--~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 120 HQSTVTYVDYNNTDEYIASV----SDGGDIIIHGTKTKQK---TTTFTI--DSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred CcceeEEEEecCCcceeEEe----ccCCcEEEEecccCcc---ccceec--CCCCeEEEeecccccceeeEeeccCCeEE
Confidence 99999999999999999999 9999999999998743 333332 11244678999996677788999999999
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (540)
+||+..... ..-....|..+...++|+|. ..+|++.+.|..|.+||.+............+...++|.+++ .
T Consensus 191 lwDv~g~sp----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G---~ 263 (673)
T KOG4378|consen 191 LWDVQGMSP----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG---T 263 (673)
T ss_pred EEeccCCCc----ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCc---e
Confidence 999988764 22223569999999999995 467788999999999999987777777778888999999988 7
Q ss_pred EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203 432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG 479 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 479 (540)
+|++|...|.|..||++....++. ....|...|++++|-|.-
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~------v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVA------VRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecCCceEEEEecccCCCCce------EeeecccceeEEEeeecc
Confidence 999999999999999998877665 346788899999997754
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=6.3e-21 Score=168.81 Aligned_cols=206 Identities=18% Similarity=0.261 Sum_probs=157.5
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~ 296 (540)
.+.+|.+.=++|+|||-..-.|++|..-+.|++|...++.....-. . ..+|+..|-.++|+|.. ..|++|
T Consensus 206 t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~----P-f~gH~~SVEDLqWSptE~~vfaSc---- 276 (440)
T KOG0302|consen 206 TFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR----P-FTGHTKSVEDLQWSPTEDGVFASC---- 276 (440)
T ss_pred EecccCccceeeecccccccccccCccccceEeeeeccCceeecCc----c-ccccccchhhhccCCccCceEEee----
Confidence 4689999999999999534458888888899999998865321111 1 15799999999999964 488888
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.||+|+|||++.+....++.+ . .|.+.|+.|.|+. .-.+|++|+.||+++|||++.-+....+..+ ..|..+
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~~-k---Ah~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f--k~Hk~p 349 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVST-K---AHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATF--KYHKAP 349 (440)
T ss_pred ecCceEEEEEecCCCccceeEe-e---ccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeE--EeccCC
Confidence 9999999999998865555555 3 3677899999998 6669999999999999999986643223334 449999
Q ss_pred eeEEEeccC-CCEEEEEeCCCeEEEEECCCC-------------------CeeeeeccCccEEEEeecCCCCCceEEEEE
Q 009203 377 VMGVAGMQQ-KQIVLSAGADKRIIGFDAGVG-------------------RADFKHQIESKCMSVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 377 v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 436 (540)
|+++.|+|. ...|++++.|.+|.+||+... +.++.|+....+-.+.|++.-+. ++++.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG--~lvsT 427 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG--LLVST 427 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC--eEEEe
Confidence 999999984 567888899999999998531 12445555666667777776543 67777
Q ss_pred cCCCe
Q 009203 437 TPGRQ 441 (540)
Q Consensus 437 ~~dg~ 441 (540)
+.||.
T Consensus 428 a~dGf 432 (440)
T KOG0302|consen 428 AIDGF 432 (440)
T ss_pred cccce
Confidence 76664
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=164.73 Aligned_cols=284 Identities=11% Similarity=0.137 Sum_probs=197.5
Q ss_pred ceEEecCCCCeEEEeccc-----hhcccccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203 199 PLVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK 272 (540)
Q Consensus 199 ~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 272 (540)
..++.+-+.+.|++|+.. ..+++|...++.++|..+ +...+.+|+.||+|++||+........+... +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~------~ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT------Q 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc------C
Confidence 568888889999999765 458999999999999864 5778999999999999999987765555432 3
Q ss_pred CC-CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203 273 HR-RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV 351 (540)
Q Consensus 273 h~-~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 351 (540)
|. .+..+++.+-.++.++.|+.-...+-.|.+||++..+ +.+..+.. .|.+.|++++|+|.+.++|++|+.||-|
T Consensus 115 ~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q--q~l~~~~e--SH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 115 QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ--QLLRQLNE--SHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred CCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc--chhhhhhh--hccCcceeEEecCCCCCeEEeecccceE
Confidence 33 4566777776778888874333568889999999762 32333322 4677899999999999999999999999
Q ss_pred EEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeeccC-------------cc
Q 009203 352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQIE-------------SK 417 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~ 417 (540)
.+||+.....--.+. ..-.|...|.++.|..++ +.|.+-+...+..+|+++.+.+....... ..
T Consensus 191 nlfD~~~d~EeDaL~--~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY 268 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALL--HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDY 268 (376)
T ss_pred EeeecCCCcchhhHH--HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhh
Confidence 999998654211111 113377889999998766 45888888999999999988764432221 11
Q ss_pred EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203 418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESS-ESQSALINQSWSPDGLYITSGSADPVIHLFDI 496 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~ 496 (540)
++.. .+|.+.. ...+.|+.-+...++-+..... .........+. +|..-|.++.|...+.++.+|++||.+.+|..
T Consensus 269 ~I~~-~~~~~~~-~~~l~g~~~n~~~~~~~~~~~s-~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 269 VINE-HSPGDKD-TCALAGTDSNKGTIFPLVDTSS-GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeec-ccCCCcc-eEEEeccccCceeEEEeeeccc-ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 1111 1233322 3444444356666655542111 00111112333 36777889999989999999999999999996
Q ss_pred c
Q 009203 497 R 497 (540)
Q Consensus 497 ~ 497 (540)
.
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 4
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.1e-20 Score=174.91 Aligned_cols=259 Identities=19% Similarity=0.248 Sum_probs=194.3
Q ss_pred CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC
Q 009203 257 GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP 336 (540)
Q Consensus 257 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 336 (540)
+-++.+.........||++.|.++...|.|.+|++| +.||+|+||.+.++ .|+..+.. .+.|.||+|+|
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasG----sdDGtvriWEi~Tg---Rcvr~~~~----d~~I~~vaw~P 451 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASG----SDDGTVRIWEIATG---RCVRTVQF----DSEIRSVAWNP 451 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcceeeec----CCCCcEEEEEeecc---eEEEEEee----cceeEEEEecC
Confidence 333444444444447999999999999999999999 99999999999997 67777664 46799999999
Q ss_pred CCCCEEEEEecCCcEEEEecCCCCC------------------------ccccc--------eeecccCCcceeEEEecc
Q 009203 337 WENPCFATGGSDHAVVLWSERDAED------------------------SWKPK--------ALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 337 ~~~~~l~s~~~dg~i~iwd~~~~~~------------------------~~~~~--------~~~~~~~~~~v~~l~~s~ 384 (540)
.....++....+.++.|.+..-|.. .|... ......|...|..+.|+.
T Consensus 452 ~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 452 LSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred CCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 4333344444444455544322210 00000 001123778899999999
Q ss_pred CCCEEEEEeCC---CeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 385 QKQIVLSAGAD---KRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 385 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
.|.+|++...+ ..|.|+++........+ ...+.+.++.|+|..+ ++++++ ...|++||+.......
T Consensus 532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p---~lfVaT-q~~vRiYdL~kqelvK------ 601 (733)
T KOG0650|consen 532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP---YLFVAT-QRSVRIYDLSKQELVK------ 601 (733)
T ss_pred CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc---eEEEEe-ccceEEEehhHHHHHH------
Confidence 99999997764 46899999876554333 4568889999999874 555544 4689999998644322
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
.+......|.+++.+|.|.-|+.|+.|+.+..||++.+ .++..++..|...+++++|++.-.++++|+.||++.|+
T Consensus 602 -kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 602 -KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred -HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 22334557999999999999999999999999999975 67999999999999999999999999999999999986
No 166
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4e-20 Score=161.86 Aligned_cols=282 Identities=13% Similarity=0.107 Sum_probs=198.4
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
..+|++...|.|++||..+++.+..+ .+|...++.++|.. ....+.+| +.||+|++||+++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f--------k~~~~~~N~vrf~~~ds~h~v~s~----ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF--------KGPPATTNGVRFISCDSPHGVISC----SSDGTVRLWDIRSQAESA 108 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee--------cCCCCcccceEEecCCCCCeeEEe----ccCCeEEEEEeecchhhh
Confidence 56888889999999999998887777 57777788999977 45678888 999999999999764322
Q ss_pred eEEeecCCCCcccceeEEEEeCCCCCEEEEEe----cCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEE
Q 009203 315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGG----SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIV 389 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l 389 (540)
.+. ... +...+..+++.+. ..+++++|+ .+..|.+||++..+. ........|.+.|+++.|+| +.++|
T Consensus 109 ~~~-~~~--~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq---~l~~~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 109 RIS-WTQ--QSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQ---LLRQLNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred hee-ccC--CCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccc---hhhhhhhhccCcceeEEecCCCCCeE
Confidence 222 222 2235677887776 677788775 367899999998764 22233366999999999999 56899
Q ss_pred EEEeCCCeEEEEECCCCCe----eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc--
Q 009203 390 LSAGADKRIIGFDAGVGRA----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES-- 463 (540)
Q Consensus 390 ~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-- 463 (540)
++|+.||.|.+||+..... +........+..+.|...+.. .|.+-+..++..+|+++.+......-......
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~yk--rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYK--RIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcc--eEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 9999999999999986432 345666777888888877653 57777888999999999877433221100000
Q ss_pred ---CccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccC----CCCcccccccc-cccceeEEEEcCCCCEEEEEEcCCc
Q 009203 464 ---SESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRY----SANKPSQSIRA-HQKRVFKAVWHYSHPLLISISSDLN 534 (540)
Q Consensus 464 ---~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~----~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~dg~ 534 (540)
......+.......++...+.++. -|...++-+.. ...+.+..+.+ |..-|.++.|...+.++.|||+||.
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 001112222222224455555444 56666665542 11344556665 7778899999988899999999999
Q ss_pred EEEEe
Q 009203 535 IGLHK 539 (540)
Q Consensus 535 v~iw~ 539 (540)
+.+|.
T Consensus 340 l~~Wk 344 (376)
T KOG1188|consen 340 LQAWK 344 (376)
T ss_pred EEEEe
Confidence 99997
No 167
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1e-20 Score=159.80 Aligned_cols=286 Identities=15% Similarity=0.198 Sum_probs=194.5
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
++++|.+.|+++.|-. ++ +|.+|..-|.|++|++.+......+.. .|...|+.+.--|+ ..|.+- +
T Consensus 9 vLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~-------~g~~~it~lq~~p~-d~l~tq----g 74 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRL-------FGRLFITNLQSIPN-DSLDTQ----G 74 (323)
T ss_pred Eeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccchhhhh-------hccceeeceeecCC-cchhhc----C
Confidence 4679999999999987 34 599999999999999998775554421 45667888888887 456666 8
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-c-----------EEEEecCCCCCcccc
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-A-----------VVLWSERDAEDSWKP 365 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~-----------i~iwd~~~~~~~~~~ 365 (540)
.|+.+.+|++.-+. .+.. |.-.++++.|.+ . -+...+... . +.+-|...... .
T Consensus 75 Rd~~L~lw~ia~s~---~i~i------~Si~~nslgFCr-f--Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq---v 139 (323)
T KOG0322|consen 75 RDPLLILWTIAYSA---FISI------HSIVVNSLGFCR-F--SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ---V 139 (323)
T ss_pred CCceEEEEEccCcc---eEEE------eeeecccccccc-c--eeccCCCcchhheecCCcccchhhhhccCccce---e
Confidence 99999999998542 1211 122345555544 1 111111111 1 11222211110 1
Q ss_pred cee--ecccCCcceeEEEecc-CCC--EEEEEeCCCeEEEEECCCCCeeee-----------eccCccEEEEeecCCCCC
Q 009203 366 KAL--HRNLHSSAVMGVAGMQ-QKQ--IVLSAGADKRIIGFDAGVGRADFK-----------HQIESKCMSVLPNPCDFN 429 (540)
Q Consensus 366 ~~~--~~~~~~~~v~~l~~s~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 429 (540)
... ......+.+++..+.. ++. ++++|.++|.+.+||+.++..+.. ..+...++++.+.+.-
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-- 217 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-- 217 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--
Confidence 111 0122456777777532 333 466788899999999998744322 2234667777777643
Q ss_pred ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203 430 LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 430 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
..=++|+.+..+..|++......... ..+..-..-.|..+.+-||++++|+++.||.|+||+.++ ..++..++.
T Consensus 218 -~rGisgga~dkl~~~Sl~~s~gslq~---~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt--l~pLAVLky 291 (323)
T KOG0322|consen 218 -DRGISGGADDKLVMYSLNHSTGSLQI---RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT--LNPLAVLKY 291 (323)
T ss_pred -cCCcCCCccccceeeeeccccCcccc---cceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc--CCchhhhhh
Confidence 23456777778889988754211110 111122234688899999999999999999999999998 899999999
Q ss_pred cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|.+.|++++|+|+..++|++|.|++|.+|+|
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999986
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.3e-21 Score=177.47 Aligned_cols=257 Identities=19% Similarity=0.182 Sum_probs=186.9
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC-----CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK-----TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATG 345 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 345 (540)
..|.+.|+.++|++....|+++ +.||.|.+|++.. ......+..+.+ |.++|.|++..+ ++..+++|
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~----sed~~lk~WnLqk~~~s~~~~~epi~tfra---H~gPVl~v~v~~-n~~~~ysg 362 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITA----SEDGTLKLWNLQKAKKSAEKDVEPILTFRA---HEGPVLCVVVPS-NGEHCYSG 362 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEe----ccccchhhhhhcccCCccccceeeeEEEec---ccCceEEEEecC-CceEEEee
Confidence 5788889999999999999999 9999999999932 122344555554 789999999999 99999999
Q ss_pred ecCCcEEEEecCCCCC---ccccce--eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--eeeccCccE
Q 009203 346 GSDHAVVLWSERDAED---SWKPKA--LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD--FKHQIESKC 418 (540)
Q Consensus 346 ~~dg~i~iwd~~~~~~---~~~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~ 418 (540)
+.||+|+.|++....- .+.+.. -...||.+.|+.+++++....|++++.||++++|+....... ......+..
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P 442 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP 442 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence 9999999996652211 011111 123679999999999999999999999999999999876651 122233444
Q ss_pred EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
.++.+....+ ...++...-+.-.++++....... .++.. .........+..+.++|.+.+.+++..|+.|+++|..
T Consensus 443 lsvd~~ss~~--a~~~~s~~~~~~~~~~~ev~s~~~-~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 443 LSVDRTSSRP--AHSLASFRFGYTSIDDMEVVSDLL-IFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred ceEeeccchh--Hhhhhhcccccccchhhhhhhhee-eccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 5555544321 122222222333333333333221 11110 0111122457788999999999999999999999999
Q ss_pred CCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 498 YSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 498 ~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+ +.++.....|...++++++.|+|.+|++++.||.|++|++
T Consensus 520 ~--~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 520 T--GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred c--cccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 8 8999999999999999999999999999999999999975
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=157.40 Aligned_cols=269 Identities=15% Similarity=0.198 Sum_probs=192.4
Q ss_pred ceEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 199 PLVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 199 ~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
..++.|..++.+.+||.. .++.+|..+|+|++||+| |+.|+|++.|..|.+||+..+.+...+. .
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~rir---------f 105 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKRIR---------F 105 (405)
T ss_pred ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeEEE---------c
Confidence 468899999999999875 679999999999999996 9999999999999999999998777763 3
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
..+|+.+.|+|.....+.++ -.+..-.+-++..+.. .++. ............+..|.+ .|+++++|...|.+.+
T Consensus 106 ~spv~~~q~hp~k~n~~va~---~~~~sp~vi~~s~~~h-~~Lp-~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVAT---IMEESPVVIDFSDPKH-SVLP-KDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLV 179 (405)
T ss_pred cCccceeeeccccCCeEEEE---EecCCcEEEEecCCce-eecc-CCCccccccccccccccC-CCCEEEEecCcceEEE
Confidence 46799999999654333321 3444445555553211 1111 111111111223346778 9999999999999999
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-------CCeeeeecc-----CccEEEE
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-------GRADFKHQI-----ESKCMSV 421 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~-----~~~~~~~ 421 (540)
||..+.+++...+.. ....|..+.|+..|..|+.-+.|+.||.|+++. ++....+.. ...-.++
T Consensus 180 ~~a~t~e~vas~rit----s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 180 YDAETLECVASFRIT----SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred Eecchheeeeeeeec----hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 999998874444332 236789999999999999999999999999862 222211222 2334466
Q ss_pred eecCCCCCceEEEEEc-CCCeEEEEECCCCcceeeeeccccccCccc-cCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 422 LPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQ-SALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
+|+.++ .|+++++ ....++||.-..+..... +.|.. .....+.|+|-...+++- ..|.++||....
T Consensus 256 cfs~dg---eYv~a~s~~aHaLYIWE~~~GsLVKI-------LhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 256 CFSGDG---EYVCAGSARAHALYIWEKSIGSLVKI-------LHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred eecCCc---cEEEeccccceeEEEEecCCcceeee-------ecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 777766 4665554 456799999988875432 23333 356788999998888888 789999998875
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=2.7e-19 Score=175.25 Aligned_cols=277 Identities=16% Similarity=0.182 Sum_probs=199.3
Q ss_pred CeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE
Q 009203 208 ATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW 282 (540)
Q Consensus 208 ~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 282 (540)
..+.+|+.. ...-.-...|+|+.|+|....+||.|..+|.|.+||+..+.... ..........|..+|+.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--PSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--CcccccccccCCcCeEEEEE
Confidence 367788664 12223457899999999989999999999999999998876521 22222222579999999999
Q ss_pred ecCCC--eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC------CcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 283 HPQGN--SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP------HVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 283 ~~~~~--~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
..+-. -|+++ +.||.|..|+++.-........+.... .....+++++|.+.+...|+.|+.+|.|.--
T Consensus 300 ~~~~~~~~f~s~----ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 300 LQNEHNTEFFSL----SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred eccCCCCceEEE----ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 76544 48888 889999999887532211111111111 1234589999999899999999999998874
Q ss_pred ecCCCCCcc----ccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC-CCCeeeeeccC-ccEEEEeecCCCC
Q 009203 355 SERDAEDSW----KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG-VGRADFKHQIE-SKCMSVLPNPCDF 428 (540)
Q Consensus 355 d~~~~~~~~----~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 428 (540)
+-....... +. ......|.+.|+++.++|-+..++..+.|.+++||... ...++...... ..+.+++|+|..+
T Consensus 376 ~r~g~~~~~~~~~~~-~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKG-HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred eccCCcccccccccc-cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence 333322111 11 11234588999999999987766666669999999988 66666655544 4488999999876
Q ss_pred CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
..++++..||.+.+||+........ ....-+....+.+.|++.|+.|++|...|.+++|++..
T Consensus 455 --avF~~~d~~G~l~iWDLl~~~~~Pv-----~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 455 --AVFATVDGDGNLDIWDLLQDDEEPV-----LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred --eEEEEEcCCCceehhhhhccccCCc-----ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 4899999999999999975442111 12222355677889999999999999999999999963
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=4.5e-18 Score=163.36 Aligned_cols=282 Identities=9% Similarity=0.070 Sum_probs=177.1
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT 317 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~ 317 (540)
++++...++.|.+|++.+...+. +.... .+......++++|++++|+++. ..++.|.+|+++.........
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~-~~~~~-----~~~~~~~~l~~spd~~~lyv~~---~~~~~i~~~~~~~~g~l~~~~ 74 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALT-LLQVV-----DVPGQVQPMVISPDKRHLYVGV---RPEFRVLSYRIADDGALTFAA 74 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCcee-eeeEE-----ecCCCCccEEECCCCCEEEEEE---CCCCcEEEEEECCCCceEEee
Confidence 34455778999999996432211 21111 1224466799999999887762 457899999997321111222
Q ss_pred eecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CC
Q 009203 318 FLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-AD 395 (540)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d 395 (540)
... ..+....++|+| ++++|++++ .++.|.+|++........ ......+...+.+++++|+|+++++++ .+
T Consensus 75 ~~~----~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 75 ESP----LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVA--PIQIIEGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred eec----CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCC--ceeeccCCCcccEeEeCCCCCEEEEeeCCC
Confidence 222 123467899999 888877765 478999999974321111 111111234567889999999886655 56
Q ss_pred CeEEEEECCCCCeee-------eeccCccEEEEeecCCCCCceEEEEEcC-CCeEEEEECCCC--cc-eeeeecc-cccc
Q 009203 396 KRIIGFDAGVGRADF-------KHQIESKCMSVLPNPCDFNLFMVQTGTP-GRQLRLYDIRLR--QT-EIHAFGW-KQES 463 (540)
Q Consensus 396 g~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~--~~-~~~~~~~-~~~~ 463 (540)
+.|.+||+.+...+. ....+.....+.++|++ .++++... ++.|.+||+... .. ....+.. ....
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg---~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ---QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC---CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 899999997633221 12234456678999987 56655554 899999999742 21 1111110 0001
Q ss_pred CccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCc--ccccccccccceeEEEEcCCCCEEEEEEc-CCcEEEEe
Q 009203 464 SESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSANK--PSQSIRAHQKRVFKAVWHYSHPLLISISS-DLNIGLHK 539 (540)
Q Consensus 464 ~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~l~~s~~~~~l~s~~~-dg~v~iw~ 539 (540)
.+......+.|+|+|++|+++.. ++.|.+|+++..... .+..... ......+.|+|||++|++++. +++|.+|+
T Consensus 225 -~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 225 -SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred -CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 11223456899999999998854 789999999753111 1222211 124568999999999887765 89999996
Q ss_pred C
Q 009203 540 I 540 (540)
Q Consensus 540 l 540 (540)
+
T Consensus 303 ~ 303 (330)
T PRK11028 303 I 303 (330)
T ss_pred E
Confidence 4
No 172
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=1.3e-18 Score=170.45 Aligned_cols=271 Identities=12% Similarity=0.157 Sum_probs=191.7
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCC--ceeEEeecCC
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKG--RACVTFLDDK 322 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~ 322 (540)
+.+.||++.......... .-...|.+++|+|... +++.| ..+|.|.+||+..+.. ...+.....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~--------~~~s~v~~~~f~p~~p~ll~gG----~y~GqV~lWD~~~~~~~~~s~ls~~~~- 288 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL--------ESPSEVTCLKFCPFDPNLLAGG----CYNGQVVLWDLRKGSDTPPSGLSALEV- 288 (555)
T ss_pred ceEEEEecCCCCCceEEE--------ecCCceeEEEeccCCcceEEee----ccCceEEEEEccCCCCCCCcccccccc-
Confidence 478999998763222221 2235699999999655 55555 9999999999997754 222332222
Q ss_pred CCcccceeEEEEeCCCC--CEEEEEecCCcEEEEecCCCCCccccceeec-------ccCCcceeEEEecc-CCCEEEEE
Q 009203 323 PHVKGIINSIIFLPWEN--PCFATGGSDHAVVLWSERDAEDSWKPKALHR-------NLHSSAVMGVAGMQ-QKQIVLSA 392 (540)
Q Consensus 323 ~~~~~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~l~~s~-~~~~l~~~ 392 (540)
.|..+++.+.|.. +. .-|++++.||.|..|+++.-........... ......++++.|.+ +-+.+++|
T Consensus 289 -sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG 366 (555)
T KOG1587|consen 289 -SHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG 366 (555)
T ss_pred -cCCcCeEEEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE
Confidence 4788999999976 43 3499999999999998876443111111111 11234688999976 45778999
Q ss_pred eCCCeEEEEECC---CCC-e----e-eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc
Q 009203 393 GADKRIIGFDAG---VGR-A----D-FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES 463 (540)
Q Consensus 393 ~~dg~i~iwd~~---~~~-~----~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 463 (540)
+.+|.|..-+-. ... . . ....+.+.+.++.++|.... .+.+++ |.+|+||.......++. .+
T Consensus 367 Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k--~fls~g-DW~vriWs~~~~~~Pl~------~~ 437 (555)
T KOG1587|consen 367 TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPK--NFLSVG-DWTVRIWSEDVIASPLL------SL 437 (555)
T ss_pred cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccc--eeeeec-cceeEeccccCCCCcch------hh
Confidence 999998773332 222 1 1 11334577889999998753 444444 99999999884443333 22
Q ss_pred CccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 464 SESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 464 ~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..+...|++++|||-. ..++++..||.|.|||+......++.+...+....+.+.|++.|+.|+.|...|++.+|++
T Consensus 438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 3455679999999965 5677888899999999997666788887777777888999999999999999999999986
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=2.8e-19 Score=160.06 Aligned_cols=280 Identities=18% Similarity=0.206 Sum_probs=189.2
Q ss_pred ceEEecCCCCeEEEeccc--------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC------
Q 009203 199 PLVRTSASPATIHCHTSN--------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS------ 258 (540)
Q Consensus 199 ~~~~~~~~d~~i~~~~~~--------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~------ 258 (540)
..+++++.|..|++|... ..|..|...|+++.|+|+ |.+||+|+.+|.|.+|....-..
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccch
Confidence 378899999999999322 348899999999999995 99999999999999998762110
Q ss_pred ----cceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE
Q 009203 259 ----GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF 334 (540)
Q Consensus 259 ----~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 334 (540)
...... .....+|...|..++|+|++.+++++ +.|..+++||+..| .....+.. |...|..++|
T Consensus 106 ~~~~ke~w~v--~k~lr~h~~diydL~Ws~d~~~l~s~----s~dns~~l~Dv~~G---~l~~~~~d---h~~yvqgvaw 173 (434)
T KOG1009|consen 106 ADLNKEKWVV--KKVLRGHRDDIYDLAWSPDSNFLVSG----SVDNSVRLWDVHAG---QLLAILDD---HEHYVQGVAW 173 (434)
T ss_pred hhhCccceEE--EEEecccccchhhhhccCCCceeeee----eccceEEEEEeccc---eeEeeccc---cccccceeec
Confidence 000000 01115799999999999999999999 99999999999987 44666665 6778999999
Q ss_pred eCCCCCEEEEEecCCcEEEEecCCCCCccccce---ee-----------cccCC----cceeEEEeccCCCEEEEEeC--
Q 009203 335 LPWENPCFATGGSDHAVVLWSERDAEDSWKPKA---LH-----------RNLHS----SAVMGVAGMQQKQIVLSAGA-- 394 (540)
Q Consensus 335 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~-----------~~~~~----~~v~~l~~s~~~~~l~~~~~-- 394 (540)
.| .++++++-+.|...+.+++...+....... .. +..|. .-...++|+|+|.++++...
T Consensus 174 Dp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 174 DP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred ch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99 999999999888777766654332111110 00 00021 22346789999999987543
Q ss_pred --CCe-----EEEEECCCCC-eeee-eccCccEEEEeecCC-------CCC-------ceEEEEEcCCCeEEEEECCCCc
Q 009203 395 --DKR-----IIGFDAGVGR-ADFK-HQIESKCMSVLPNPC-------DFN-------LFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 395 --dg~-----i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~-------~~~-------~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
++. .++|+-...+ +... .........+.++|- ... .+++++-...+.|++||..+..
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~ 332 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE 332 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence 222 3444433211 1111 111223333333331 100 0233333445689999998766
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
..... ..-|-..++.++|++||.+|+..+.||...+--++.
T Consensus 333 P~~~v------~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 333 PLAVV------DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred ceEEE------eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 43332 234777999999999999999999999988877775
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.9e-20 Score=174.31 Aligned_cols=276 Identities=17% Similarity=0.180 Sum_probs=193.0
Q ss_pred EEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeE
Q 009203 210 IHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSL 289 (540)
Q Consensus 210 i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l 289 (540)
-+-|+...++..|.+.|+.++|.| ....|++++.||++++|++.....-............+|.++|.|+++.+++..+
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred heecceeeeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE
Confidence 344776677889999999999999 5889999999999999999432111100000011116999999999999999999
Q ss_pred EEEeecCCCCCeEEEEecCCCCC-------ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCc
Q 009203 290 FSAHTADSGDSQISVLNLNKTKG-------RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDS 362 (540)
Q Consensus 290 ~s~~~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 362 (540)
++| +.||+|+.|++..... ......+. +|.+.|+.+++++ ....|++++.||++++|+......
T Consensus 360 ysg----g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~---Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 360 YSG----GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL---GHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred Eee----ccCceeeeeccCCCCCcccccCcchhcccee---ccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-
Confidence 999 9999999997653211 11122233 4788999999999 888899999999999999987653
Q ss_pred cccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeecc--------CccEEEEeecCCCCCceEE
Q 009203 363 WKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQI--------ESKCMSVLPNPCDFNLFMV 433 (540)
Q Consensus 363 ~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l 433 (540)
.++......+...++.+-... .+.++...-+.--++++.....+..+.. ...+..+.++|.. .+.
T Consensus 431 ---~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~---~~~ 504 (577)
T KOG0642|consen 431 ---CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA---DIT 504 (577)
T ss_pred ---cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC---Cee
Confidence 222222233445666664322 2222222233333444444333332211 2345567777766 488
Q ss_pred EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
+++..|+.|+++|..++.... ....|...++++++.|+|.+|++|+.|+.+++|.+.. ..++.....|
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~-------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~--k~~~~es~~~ 572 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILH-------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV--KTCVLESTAH 572 (577)
T ss_pred EecccCCceecccccccccch-------heeeccceecceeecCCCceEEeecCCceeehhhccc--hheeeccccc
Confidence 999999999999999887544 3356788999999999999999999999999999986 4455444444
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=1.8e-19 Score=160.56 Aligned_cols=221 Identities=17% Similarity=0.245 Sum_probs=168.2
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~ 296 (540)
...||+++|..++|+|.+...||+||.|.+|.||.+..+.....+....... .||...|--++|+|.. +.|+++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA~NVLlsa---- 150 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTAPNVLLSA---- 150 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccchhhHhhc----
Confidence 4689999999999999989999999999999999998876655444222222 6999999999999964 588888
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc-
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS- 375 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~- 375 (540)
+.|.+|.+||+.++. .+..+. |.+.|+++.|+. +|.+|++.+.|..|+|||.++++.+... .+|.+
T Consensus 151 g~Dn~v~iWnv~tge---ali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~-----~~heG~ 217 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGE---ALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG-----VAHEGA 217 (472)
T ss_pred cCCceEEEEeccCCc---eeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec-----ccccCC
Confidence 999999999999983 233343 678999999999 9999999999999999999999853222 33443
Q ss_pred ceeEEEeccCCCEEEEEe---CCCeEEEEECCCCCe---eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 376 AVMGVAGMQQKQIVLSAG---ADKRIIGFDAGVGRA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
.-..+.|-.+|..+-+|- .+..+-+||..+-.. .........++--.++++.. .+.++|-.|+.|+.|.+..
T Consensus 218 k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~--ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 218 KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS--IVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC--EEEEEecCCcceEEEEecC
Confidence 345566777888544443 367899999877443 22344445555556666652 4567788899999999998
Q ss_pred Ccceeeeec
Q 009203 450 RQTEIHAFG 458 (540)
Q Consensus 450 ~~~~~~~~~ 458 (540)
....++.+.
T Consensus 296 d~P~~hyln 304 (472)
T KOG0303|consen 296 EPPFVHYLN 304 (472)
T ss_pred CCceeEEec
Confidence 776565543
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.4e-20 Score=185.07 Aligned_cols=232 Identities=20% Similarity=0.290 Sum_probs=185.0
Q ss_pred eEEecCCCCeEEEeccch-----------hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccccc
Q 009203 200 LVRTSASPATIHCHTSNH-----------VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDC 268 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~~-----------~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~ 268 (540)
.++-+..|+.|.+|+... ....|++.|..+.|++..+++||+|+.||.|.|||+...+...++..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~---- 157 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS---- 157 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC----
Confidence 578888999999997653 25789999999999998788999999999999999998665444421
Q ss_pred CCCCCCCCceeEEEecCC-CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203 269 LSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS 347 (540)
Q Consensus 269 ~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 347 (540)
..-.+.|.+++|+..- ..|+++ +.+|.+.|||++.. +.+..+..... ...+..++|+|++...|++++.
T Consensus 158 --~~~~~eI~~lsWNrkvqhILAS~----s~sg~~~iWDlr~~---~pii~ls~~~~-~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 158 --QAPPSEIKCLSWNRKVSHILASG----SPSGRAVIWDLRKK---KPIIKLSDTPG-RMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred --CCCcccceEeccchhhhHHhhcc----CCCCCceeccccCC---CcccccccCCC-ccceeeeeeCCCCceeeeeecC
Confidence 2345779999998754 467777 89999999999965 22333333221 2458899999977888888877
Q ss_pred CC---cEEEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEe
Q 009203 348 DH---AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVL 422 (540)
Q Consensus 348 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~ 422 (540)
|. .|.+||++..... .+.+ .+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..... ...+..+.
T Consensus 228 dd~~PviqlWDlR~assP--~k~~--~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFASSP--LKIL--EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred CCCCceeEeecccccCCc--hhhh--cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 64 5999999876531 1222 5699999999999866 8999999999999999999999877554 57788999
Q ss_pred ecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 423 PNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
|+|.++. .+++++.||.|.||.+....
T Consensus 304 w~pr~P~--~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPS--VMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcc--hhhhheeccceeeeeeecCC
Confidence 9998874 78999999999999998655
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=1.6e-18 Score=174.98 Aligned_cols=313 Identities=15% Similarity=0.178 Sum_probs=210.7
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCc-ceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSG-ASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.+..|...|..++.+++.+.+++|||.||+|++|+...-... ...... .....-...+.++.+.+.++.+|.+
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~--ltys~~~sr~~~vt~~~~~~~~Av~---- 1116 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSE--LTYSPEGSRVEKVTMCGNGDQFAVS---- 1116 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeee--EEEeccCCceEEEEeccCCCeEEEE----
Confidence 367889999999999876799999999999999998754322 111110 0001234668899999999999999
Q ss_pred CCCCeEEEEecCCCCCce--eEEeecCCCCccccee-EEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203 297 SGDSQISVLNLNKTKGRA--CVTFLDDKPHVKGIIN-SIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~-~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
+.||.|.+.+++...... +........+..+.+. .-+|....+. .++.+..-+.|..||++.....|..+. ..
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~---~~ 1193 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN---QL 1193 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc---Cc
Confidence 999999999998621111 1111111111223333 3345443445 788888889999999999877555443 33
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCc-eEEEEEc-CCCeEEEEECC
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNL-FMVQTGT-PGRQLRLYDIR 448 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~~-~dg~v~i~d~~ 448 (540)
..+.|++++.+|.+++++.|+..|.+.+||++-+.++... .....+..+..+|..+.. ..+.+++ ..+.|.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 5578999999999999999999999999999988877654 344566666666654422 2344444 67889999999
Q ss_pred CCcceeeeecc-c-------ccc----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc--------------
Q 009203 449 LRQTEIHAFGW-K-------QES----SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK-------------- 502 (540)
Q Consensus 449 ~~~~~~~~~~~-~-------~~~----~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~-------------- 502 (540)
++.+....+.. . ... +.+.-......+...+.++.+|+.|..|+.||...+...
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccccc
Confidence 88654433321 0 000 012222233344445678999999999999998742111
Q ss_pred -------------ccc---------------------------cccccccceeEEEEcCCC-CEEEEEEcCCcEEEEe
Q 009203 503 -------------PSQ---------------------------SIRAHQKRVFKAVWHYSH-PLLISISSDLNIGLHK 539 (540)
Q Consensus 503 -------------~~~---------------------------~~~~h~~~i~~l~~s~~~-~~l~s~~~dg~v~iw~ 539 (540)
.+. .-..|..+|++|++.... .+|++++.||.|+||.
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 001477789999887654 5899999999999995
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=1.8e-20 Score=181.52 Aligned_cols=279 Identities=15% Similarity=0.139 Sum_probs=211.4
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.||.+.|+|+.|.- .|+++++|+.|..|+||..++..+.... .||.+.|+.++.+.+..+++++ +.
T Consensus 186 LlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~--------rGhs~ditdlavs~~n~~iaaa----S~ 252 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASC--------RGHSGDITDLAVSSNNTMIAAA----SN 252 (1113)
T ss_pred HHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccC--------CCCccccchhccchhhhhhhhc----cc
Confidence 789999999999998 5999999999999999999998887777 7999999999999998899999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
|..|++|.+..+ ..+..+.+ |.+.|++++|+| ..+.+.||++++||.+-.-..+.+.... ......+.
T Consensus 253 D~vIrvWrl~~~---~pvsvLrg---htgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~-~~~~~~~~ 320 (1113)
T KOG0644|consen 253 DKVIRVWRLPDG---APVSVLRG---HTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLK-FTEKDLVD 320 (1113)
T ss_pred CceEEEEecCCC---chHHHHhc---cccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCC-ccccccee
Confidence 999999999987 55777775 788999999999 4478899999999998222222222221 12335677
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 458 (540)
++.|..++.-+++++.|+.-..|.+....... ....-+..+.+- + .+.+++-.+..+.+|++.++...-
T Consensus 321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~-~-~~~~~ar~~~~~~vwnl~~g~l~H---- 389 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDL-S-SIVVTARNDHRLCVWNLYTGQLLH---- 389 (1113)
T ss_pred eeeccccccccccccCCcccccchhhHhhhhc-----cceEEEeccccc-c-ccceeeeeeeEeeeeecccchhhh----
Confidence 78888888999999999998888765321100 000000011110 0 366677778889999998876422
Q ss_pred cccccCccccCeEEEEEcCCCCE-EEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 459 WKQESSESQSALINQSWSPDGLY-ITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
.+.+|...+..+.++|-... ..+++.||...|||+-. +.++.......+.+...+||+||..++....-|.+.|
T Consensus 390 ---~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e--g~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 390 ---NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE--GIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ---hhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc--CCcceeeecccceeeccccCCCCceEecCCCCCceEE
Confidence 45678889999999996554 55889999999999987 5555444322446788899999998888777788877
Q ss_pred E
Q 009203 538 H 538 (540)
Q Consensus 538 w 538 (540)
.
T Consensus 465 ~ 465 (1113)
T KOG0644|consen 465 L 465 (1113)
T ss_pred e
Confidence 5
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=4.1e-17 Score=163.19 Aligned_cols=290 Identities=24% Similarity=0.378 Sum_probs=213.7
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC-CcceeecccccCCCCCCCCceeEEE-ecCCC-eEEEEee
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG-SGASLLSTTDCLSPKHRRWPEDIAW-HPQGN-SLFSAHT 294 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~-~~~~~-~l~s~~~ 294 (540)
.+.+|...|.++.|.+. +..++.++.|+.+.+|+..... ....+.. .+...+..+.+ ++++. .++..
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-- 129 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEG-------LHDSSVSKLALSSPDGNSILLAS-- 129 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEec-------cCCCceeeEEEECCCcceEEecc--
Confidence 35689999999999994 8889999999999999998876 3333321 11135667777 78787 45544
Q ss_pred cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeecccC
Q 009203 295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
+..++.+.+||.... ......+.. |...|..++|+| ++..+++++. |+.+++|++..+.. ...+ .+|
T Consensus 130 -~~~d~~~~~~~~~~~--~~~~~~~~~---~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~ 197 (466)
T COG2319 130 -SSLDGTVKLWDLSTP--GKLIRTLEG---HSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKP---LSTL--AGH 197 (466)
T ss_pred -CCCCccEEEEEecCC--CeEEEEEec---CcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCce---EEee--ccC
Confidence 144999999999861 133444443 567799999999 8888888885 99999999998543 2222 448
Q ss_pred CcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 374 SSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 374 ~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
...|.+++|+|++. .+++++.|+.|++||...+.... ............|++.+ .++++++.|+.+++|++....
T Consensus 198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCC
Confidence 99999999999998 55555899999999988777665 23332222111677776 477799999999999999766
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc--ccccceeEEEEcCCCCEEEEE
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR--AHQKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~i~~l~~s~~~~~l~s~ 529 (540)
..... ..+|...+.++.|+|++..+++++.|+.+.+|+... ........ .|...+..+.|.+++..++.+
T Consensus 275 ~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 275 SLLRT------LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET--GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred cEEEE------EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC--CceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 52221 146788999999999999998899999999998886 33333333 777789999994332455555
Q ss_pred -EcCCcEEEEeC
Q 009203 530 -SSDLNIGLHKI 540 (540)
Q Consensus 530 -~~dg~v~iw~l 540 (540)
..|+.+.+|++
T Consensus 347 ~~~d~~~~~~~~ 358 (466)
T COG2319 347 GSDDGTIRLWDL 358 (466)
T ss_pred ecCCCcEEeeec
Confidence 68899999874
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.6e-18 Score=170.89 Aligned_cols=303 Identities=16% Similarity=0.163 Sum_probs=209.1
Q ss_pred EEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCC
Q 009203 210 IHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGN 287 (540)
Q Consensus 210 i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~ 287 (540)
|..|+. +...+...+-..+.|+|. ...++++...-.|+|||.+.++....+.... .-...|+.+.+-. |..
T Consensus 1052 i~~W~~-~~~~~n~~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1052 IGNWDQ-KFMTGNNQPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred ccchHH-HHHhcCCCCCceeeecCC-CceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchh
Confidence 344442 234555567788899996 7778888777799999999988766554432 2346689999865 345
Q ss_pred eEEEEeecCCCCCeEEEEecC-CC-CCceeEEeecCCC----CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC
Q 009203 288 SLFSAHTADSGDSQISVLNLN-KT-KGRACVTFLDDKP----HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED 361 (540)
Q Consensus 288 ~l~s~~~~~~~d~~i~vwd~~-~~-~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 361 (540)
++++| +.||.|+||+-- .. +..+.++.+.+.. ...+.-.-+.|....|.++++| .-..|+|||......
T Consensus 1125 LlLta----s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1125 LLLTA----SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQV 1199 (1387)
T ss_pred heeee----ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEeccccee
Confidence 88888 999999999643 22 3334444433221 1112224467877455555554 468999999988764
Q ss_pred ccccceeecccCCcceeEEEec-cCCCEEEEEeCCCeEEEEECCCCCe---eee---eccCccEEEEeecCCCCCceEEE
Q 009203 362 SWKPKALHRNLHSSAVMGVAGM-QQKQIVLSAGADKRIIGFDAGVGRA---DFK---HQIESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~l~ 434 (540)
..... .+....|+++.-+ ..|+.+++|..||.|++||.+.... +.. +.....++.+.+.+.+.. -|+
T Consensus 1200 ~~diP----~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~--elv 1273 (1387)
T KOG1517|consen 1200 VADIP----YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG--ELV 1273 (1387)
T ss_pred Eeecc----cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc--cee
Confidence 22121 2244567777654 3579999999999999999987443 211 333334788888776642 699
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccccCcc---ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSES---QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH- 510 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h- 510 (540)
+|+.+|.|++||++.... ...+ ....| .+.++++..+++...+|+|+. +.|.||++. ++.+..++.+
T Consensus 1274 Sgs~~G~I~~~DlR~~~~-e~~~----~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~---G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSK-ETFL----TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS---GEQLNIIKYNP 1344 (1387)
T ss_pred eeccCCeEEEEecccCcc-cccc----eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC---hhhhcccccCc
Confidence 999999999999997421 1111 11122 225899999999999999998 999999998 4555554432
Q ss_pred ------ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 511 ------QKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 511 ------~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+.+.+++|+|---+||+|+.|.+|.||.
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 34689999999999999999999999984
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=5.1e-19 Score=167.60 Aligned_cols=250 Identities=13% Similarity=0.159 Sum_probs=188.6
Q ss_pred CCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEE
Q 009203 207 PATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281 (540)
Q Consensus 207 d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 281 (540)
+..+.+||.. +.++||++.|+|++|+.| |..+|+|+.|..|.+|+-.-.. .+. -.|.+.|.|+.
T Consensus 32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG---~Lk-------YSH~D~IQCMs 100 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEG---ILK-------YSHNDAIQCMS 100 (1081)
T ss_pred CCEEEEEeCCCcccccccccccceEEEEEEccC-CceeccCCCceeEEEecccccc---eee-------eccCCeeeEee
Confidence 4455666543 678999999999999996 9999999999999999865432 221 37999999999
Q ss_pred EecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC
Q 009203 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED 361 (540)
Q Consensus 282 ~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 361 (540)
|+|-...|+++ .-...-+|..... .+.... ....|.+++|.. ||.+|+.|-.+|+|.|-+-...+.
T Consensus 101 FNP~~h~LasC-----sLsdFglWS~~qK----~V~K~k----ss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 101 FNPITHQLASC-----SLSDFGLWSPEQK----SVSKHK----SSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred cCchHHHhhhc-----chhhccccChhhh----hHHhhh----hheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcc
Confidence 99999999997 3345678877642 122211 245689999999 999999999999999986544332
Q ss_pred ccccceeec-ccCCcceeEEEeccCC-----CEEEEEeCCCeEEEEECCCCCeee-eeccCccEEEEeecCCCCCceEEE
Q 009203 362 SWKPKALHR-NLHSSAVMGVAGMQQK-----QIVLSAGADKRIIGFDAGVGRADF-KHQIESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 362 ~~~~~~~~~-~~~~~~v~~l~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 434 (540)
..+.+ .+..++|.+++|+|.. ..+++.....++.+|.+. |+.+- ....+-...++.+.+.+ .+++
T Consensus 167 ----~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NG---Ey~L 238 (1081)
T KOG1538|consen 167 ----VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNG---EYIL 238 (1081)
T ss_pred ----eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCC---cEEE
Confidence 23333 4467899999999853 578888888889988887 44433 33444455566666666 6999
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
.|+.|+.+.+|-...- .+. +......+|+.++..|++++++.|+.||+|..|++-
T Consensus 239 iGGsdk~L~~fTR~Gv--rLG------Tvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDGV--RLG------TVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EccCCCceEEEeecCe--EEe------eccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999999976521 111 233456799999999999999999999999999886
No 182
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.5e-19 Score=163.01 Aligned_cols=301 Identities=14% Similarity=0.114 Sum_probs=226.5
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEee
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHT 294 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~ 294 (540)
..|.+|.+.|+.|.|+.. |..|++|+.|..|.+||...+.....+. .||...|....|-|. ...|+++
T Consensus 136 ~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-------SGH~~NvfQaKFiP~s~d~ti~~~-- 205 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFE-------SGHCNNVFQAKFIPFSGDRTIVTS-- 205 (559)
T ss_pred hcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccc-------cccccchhhhhccCCCCCcCceec--
Confidence 457899999999999995 9999999999999999999877655543 589999988899884 4578888
Q ss_pred cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
+.||.|++=.+...........+ ..|.++|.-++.-|.+..-|.+++.|+.+.-+|++.+....... ....+.
T Consensus 206 --s~dgqvr~s~i~~t~~~e~t~rl---~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--cr~~~~ 278 (559)
T KOG1334|consen 206 --SRDGQVRVSEILETGYVENTKRL---APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--CREADE 278 (559)
T ss_pred --cccCceeeeeeccccceecceec---ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--eeccCC
Confidence 99999999877654222222222 24788999999999888899999999999999999876532222 122233
Q ss_pred c---ceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCee------e-------eeccCccEEEEeecCCCCCceEEEEEc
Q 009203 375 S---AVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRAD------F-------KHQIESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 375 ~---~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
. ...+++..|.. +.+++++.|-.+++||.+.-... . .......+.++.++.++ .-+++..
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~---sElLaSY 355 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG---SELLASY 355 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc---cceeeee
Confidence 3 56788888854 48899999999999998752211 1 11335677888888665 3466667
Q ss_pred CCCeEEEEECCCCcc--eee----eeccccccCccccC--eEEEEE-cCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203 438 PGRQLRLYDIRLRQT--EIH----AFGWKQESSESQSA--LINQSW-SPDGLYITSGSADPVIHLFDIRYSANKPSQSIR 508 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~--~~~----~~~~~~~~~~~~~~--v~~~~~-sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 508 (540)
.|-.|++|.-..+.. +.. ..-.+...++|.+. |-++-| -|...|+++|+.-|.|.||+-.+ ++.+..+.
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t--~eii~~Me 433 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT--GEIIRFME 433 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch--hHHHHHhh
Confidence 788899995443221 000 00112235677653 566654 68889999999999999999998 78888888
Q ss_pred ccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 509 AHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 509 ~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
+...-|+||.=+|--.+||++|-|.-|+||-
T Consensus 434 gDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 434 GDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred cccceEeccCCCCCCchhhccCCccceeeec
Confidence 8777899999999999999999999999994
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2e-17 Score=138.27 Aligned_cols=282 Identities=17% Similarity=0.190 Sum_probs=188.3
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccc-c-cCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT-D-CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~-~-~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
..|.+-+|+| .+++|+.|..+|.|.+..+.+........... . ....+|.++|+.++|+ ..+|+++ .||.
T Consensus 11 ~tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-----gdG~ 82 (325)
T KOG0649|consen 11 NTVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-----GDGL 82 (325)
T ss_pred HHHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-----cCce
Confidence 3566778999 69999999999999999886432111110000 0 0115899999999998 4577775 6799
Q ss_pred EEEEecCCCCCc-eeEEeecCC-CCc-----ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 302 ISVLNLNKTKGR-ACVTFLDDK-PHV-----KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 302 i~vwd~~~~~~~-~~~~~~~~~-~~~-----~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
|+-|..+..... .+...++.. +.+ -..|+++-..|..+. +++++.|+.++-||+++|+. .....+|+
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i-----~r~~rGHt 156 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRI-----QREYRGHT 156 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEE-----EEEEcCCc
Confidence 999988754220 111111100 011 235899999994454 55555799999999999984 33446899
Q ss_pred cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----------CccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203 375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----------ESKCMSVLPNPCDFNLFMVQTGTPGRQLR 443 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 443 (540)
+.|.++.--.....+++|+.||++++||+++++.+..... ...+.+++.+. .++++|+ ...+.
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-----dWlvCGg-Gp~ls 230 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-----DWLVCGG-GPKLS 230 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-----ceEEecC-CCcee
Confidence 9999999855567789999999999999999998665332 23344555544 3666654 46899
Q ss_pred EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH 523 (540)
Q Consensus 444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~ 523 (540)
+|.++..++... +. ....+..+.|. ...+++++..+.|.-|.+. +..-..........++..|+..-
T Consensus 231 lwhLrsse~t~v-fp-------ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~---Gvl~a~ip~~s~~c~s~s~~~~p 297 (325)
T KOG0649|consen 231 LWHLRSSESTCV-FP-------IPARVHLVDFV--DDCVLIGGEGNHVQSYTLN---GVLQANIPVESTACYSASWQTSP 297 (325)
T ss_pred EEeccCCCceEE-Ee-------cccceeEeeee--cceEEEeccccceeeeeec---cEEEEeccCCccceeeecccCCc
Confidence 999998775332 21 23467778884 5578888888889999888 55444444434345566664332
Q ss_pred -CEEEEEEcCCcEEEE
Q 009203 524 -PLLISISSDLNIGLH 538 (540)
Q Consensus 524 -~~l~s~~~dg~v~iw 538 (540)
++|-.++..+.+.|+
T Consensus 298 ~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHIL 313 (325)
T ss_pred eEEEEecccceeeeee
Confidence 455566666667665
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=2.3e-16 Score=157.67 Aligned_cols=298 Identities=24% Similarity=0.358 Sum_probs=221.4
Q ss_pred CCCCeEEEeccc------hhcccccCceEEEEEecCCCcEEEEEeC-CceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203 205 ASPATIHCHTSN------HVSSLHKRKLRSLSLNPVNEQLFVTSAL-DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP 277 (540)
Q Consensus 205 ~~d~~i~~~~~~------~~~~~h~~~V~~l~~spd~~~~l~tg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V 277 (540)
..|+.+.+|+.. ..+.+|...|.+++|+|+ +.++++++. |+.+++|++........+ .+|...|
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v 201 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKPLSTL--------AGHTDPV 201 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCceEEee--------ccCCCce
Confidence 448899999654 447899999999999996 778888885 999999999985554444 4688999
Q ss_pred eeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEE-eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 278 EDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVT-FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 278 ~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.+++|+|++. .++++ +.|+.|.+||...+ .... .+.. |...+ ...|+| ++..+++++.|+.+++|+
T Consensus 202 ~~~~~~~~~~~~~~~~----~~d~~i~~wd~~~~---~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~ 269 (466)
T COG2319 202 SSLAFSPDGGLLIASG----SSDGTIRLWDLSTG---KLLRSTLSG---HSDSV-VSSFSP-DGSLLASGSSDGTIRLWD 269 (466)
T ss_pred EEEEEcCCcceEEEEe----cCCCcEEEEECCCC---cEEeeecCC---CCcce-eEeECC-CCCEEEEecCCCcEEEee
Confidence 9999999998 66666 89999999988744 3344 3443 33433 238999 778888999999999999
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---cCccEEEEeecCCCCCceE
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 432 (540)
+..... ..... ..|...+.++.|+|++..+++++.|+.+.+||........... ....+..+.+ +.+ ...+
T Consensus 270 ~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 343 (466)
T COG2319 270 LRSSSS--LLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD-GSLL 343 (466)
T ss_pred ecCCCc--EEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC-CCEE
Confidence 997663 01112 4688999999999988888889999899999998876654433 3334667777 422 1134
Q ss_pred EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE-EeCCCcEEEEeccCCCCcccccccccc
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS-GSADPVIHLFDIRYSANKPSQSIRAHQ 511 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~h~ 511 (540)
+..+..|+.+.+|++.... ..... . ....+..+.+++ ...++. +..++.+.+|+... .........+.
T Consensus 344 ~~~~~~d~~~~~~~~~~~~-~~~~~------~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 412 (466)
T COG2319 344 VSGGSDDGTIRLWDLRTGK-PLKTL------E-GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLST--GSLLRNLDGHT 412 (466)
T ss_pred EEeecCCCcEEeeecCCCc-eeEEe------c-CCceEEEEEECC-CCCEEEEecCCCceEEEeccc--CeeeeeccCCC
Confidence 4444778999999998776 22111 1 111288899988 544444 68899999999997 34333333332
Q ss_pred cceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 512 KRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..+....+++++..+++++.++.+++|++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 68999999999999999999999999974
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=153.85 Aligned_cols=256 Identities=12% Similarity=0.085 Sum_probs=191.4
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC---CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK---GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS 347 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 347 (540)
.+|.+-|+++.|+.++++|++| +.|..+++|.+...- ..+.+..... +|.+.|.|++|.. .+..+++|+.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SG----GDD~~~~~W~~de~~~~k~~KPI~~~~~--~H~SNIF~L~F~~-~N~~~~SG~~ 125 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASG----GDDMHGRVWNVDELMVRKTPKPIGVMEH--PHRSNIFSLEFDL-ENRFLYSGER 125 (609)
T ss_pred hhhccccceeeeccCCeEEeec----CCcceeeeechHHHHhhcCCCCceeccC--ccccceEEEEEcc-CCeeEecCCC
Confidence 4899999999999999999999 999999999987421 1133444332 4668899999998 8889999999
Q ss_pred CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCC----eeeeeccCccEEEEee
Q 009203 348 DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGR----ADFKHQIESKCMSVLP 423 (540)
Q Consensus 348 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~ 423 (540)
+++|...|+++.+. +..+......+.|+.+..+|..+.|++.+.++.|.+||.+... ++..-..+....++.|
T Consensus 126 ~~~VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 126 WGTVIKHDIETKQS---IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred cceeEeeeccccee---eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 99999999999875 2333323345699999999999999999999999999998654 2333445566778889
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP 503 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~ 503 (540)
+|..+ .+|++.+..+.+.+||.+.....+...+....+......-.++.|+|+|+.|.+--....-.+||+-+. ..+
T Consensus 203 ~P~~P--~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~-R~~ 279 (609)
T KOG4227|consen 203 HPETP--ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ-RCF 279 (609)
T ss_pred cCCCc--eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc-cce
Confidence 99876 589999999999999999877655443322233332233467899999999888766666677888752 222
Q ss_pred ccccc----c--cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 504 SQSIR----A--HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 504 ~~~~~----~--h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+..+. + ....|.+++|..|-. +++|+.+-.|++|+|
T Consensus 280 V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 280 VLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred eEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence 22222 1 122577888876544 999999999999986
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=5.7e-18 Score=145.23 Aligned_cols=251 Identities=13% Similarity=0.219 Sum_probs=182.3
Q ss_pred ceeEEEec--C-CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC-----CEEEEEecC
Q 009203 277 PEDIAWHP--Q-GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN-----PCFATGGSD 348 (540)
Q Consensus 277 V~~~~~~~--~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-----~~l~s~~~d 348 (540)
+.++.|+. + +.+|+.|+...-..+.|.|..+..... +.+..-. ..|.-+++.+-|.| +. ++|+|++
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-e~~~~a~--fd~~YP~tK~~wiP-d~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-ELVEDAN--FDHPYPVTKLMWIP-DSKGVYPDLLATSS-- 120 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-ceeccCC--CCCCCCccceEecC-CccccCcchhhccc--
Confidence 55677763 2 347787744434567788876663322 2221111 24678899999999 54 4566654
Q ss_pred CcEEEEecCCCCCccccc----eeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCe----eeeeccCccEE
Q 009203 349 HAVVLWSERDAEDSWKPK----ALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRA----DFKHQIESKCM 419 (540)
Q Consensus 349 g~i~iwd~~~~~~~~~~~----~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~ 419 (540)
..+++|.+...+...... .-....+..+++++.|+. +-++|.+++-|-++.|||+.++.. .+...++..+.
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 479999998432111111 111233678999999976 668999999999999999998733 23466778889
Q ss_pred EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCC-CcEEEEecc
Q 009203 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSAD-PVIHLFDIR 497 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~d-g~i~iwd~~ 497 (540)
.++|...+. .++++.+.||.|++||++..+.....+. -.....+...++|++. -+++|+-..| ..|.|.|++
T Consensus 201 DIaf~~~s~--~~FASvgaDGSvRmFDLR~leHSTIIYE----~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 201 DIAFLKGSR--DVFASVGADGSVRMFDLRSLEHSTIIYE----DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred EEEeccCcc--ceEEEecCCCcEEEEEecccccceEEec----CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 999987443 5899999999999999998775544432 1222557889999984 5778876655 579999999
Q ss_pred CCCCcccccccccccceeEEEEcCCC-CEEEEEEcCCcEEEEeC
Q 009203 498 YSANKPSQSIRAHQKRVFKAVWHYSH-PLLISISSDLNIGLHKI 540 (540)
Q Consensus 498 ~~~~~~~~~~~~h~~~i~~l~~s~~~-~~l~s~~~dg~v~iw~l 540 (540)
.+ ..++..+.+|.+.|++++|.|.. ..|.|+|+|..+.||||
T Consensus 275 ~P-~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 275 VP-CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred CC-CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence 87 78999999999999999999976 58999999999999996
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=8.2e-18 Score=144.10 Aligned_cols=239 Identities=16% Similarity=0.216 Sum_probs=172.9
Q ss_pred eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-------CcEEEEecCCCC
Q 009203 288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-------HAVVLWSERDAE 360 (540)
Q Consensus 288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-------g~i~iwd~~~~~ 360 (540)
.+++|+..--.|+.|.+.+++.+........+. |+.+.|+.++-+|.+..+|+++..+ ..+.||.+....
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~---h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFF---HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhh---cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence 445553322467889998888764433333333 6788999999999888888888653 247799886543
Q ss_pred Cccccceeec-----ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-e------eccCccEEEEeecCCCC
Q 009203 361 DSWKPKALHR-----NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-K------HQIESKCMSVLPNPCDF 428 (540)
Q Consensus 361 ~~~~~~~~~~-----~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~------~~~~~~~~~~~~~~~~~ 428 (540)
......++.. ..+-+.|.|+.|.|++..+++.. |..|.+|++..+..+. . ........+-.|+|...
T Consensus 105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence 2211111111 12445899999999999998776 7789999998866521 1 11234456677888432
Q ss_pred CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccCCCCcccccc
Q 009203 429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~ 507 (540)
. ..+++ ..|+++..||+++..+... ....|...|..+.|+|+.. +|++++.||.|+|||.+.. ..++..+
T Consensus 184 g-nqv~t-t~d~tl~~~D~RT~~~~~s------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-k~pv~el 254 (370)
T KOG1007|consen 184 G-NQVAT-TSDSTLQFWDLRTMKKNNS------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-KFPVQEL 254 (370)
T ss_pred c-ceEEE-eCCCcEEEEEccchhhhcc------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC-Ccccccc
Confidence 2 34444 4578999999998775443 2356888899999999865 5889999999999999975 6789999
Q ss_pred cccccceeEEEEcCCC-CEEEEEEcCCcEEEEe
Q 009203 508 RAHQKRVFKAVWHYSH-PLLISISSDLNIGLHK 539 (540)
Q Consensus 508 ~~h~~~i~~l~~s~~~-~~l~s~~~dg~v~iw~ 539 (540)
.+|...|+++.|+|.- ++|.+||.|..|.+|-
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 9999999999999854 6889999999999884
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1.5e-17 Score=148.47 Aligned_cols=205 Identities=18% Similarity=0.210 Sum_probs=161.1
Q ss_pred CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc--ceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEE
Q 009203 324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP--KALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIG 400 (540)
Q Consensus 324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~i 400 (540)
+|.++|..++|+|.+...|++|+.|.+|.||.+-.+...... ......+|...|.-++|+|. .+.|++++.|.+|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 488999999999999999999999999999999766543222 24445789999999999995 578899999999999
Q ss_pred EECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcccc-CeEEEEEcCCC
Q 009203 401 FDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQS-ALINQSWSPDG 479 (540)
Q Consensus 401 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 479 (540)
||+.+|+.+....+...+.++.|+.++ .++++.+.|..|+|||.+++..... ..+|.+ ....+.|-.+|
T Consensus 159 Wnv~tgeali~l~hpd~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v~e-------~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 159 WNVGTGEALITLDHPDMVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVVSE-------GVAHEGAKPARAIFLASG 228 (472)
T ss_pred EeccCCceeeecCCCCeEEEEEeccCC---ceeeeecccceeEEEcCCCCcEeee-------cccccCCCcceeEEeccC
Confidence 999999998888899999999999988 7999999999999999998886442 234444 24556777788
Q ss_pred CEEEEEe---CCCcEEEEeccCCCCccc--ccccccccceeEEEEcCCCCEEEE-EEcCCcEEEEeC
Q 009203 480 LYITSGS---ADPVIHLFDIRYSANKPS--QSIRAHQKRVFKAVWHYSHPLLIS-ISSDLNIGLHKI 540 (540)
Q Consensus 480 ~~l~sg~---~dg~i~iwd~~~~~~~~~--~~~~~h~~~i~~l~~s~~~~~l~s-~~~dg~v~iw~l 540 (540)
.++.+|- ++..+-+||..+- .+++ ..+. .++.|.---|.+|..++.. |-.|+.|+.|.+
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl-~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNL-EEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred ceeeeccccccccceeccCcccc-cCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 8555553 4678999999874 2232 2333 3445666678888887655 457899998864
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.1e-17 Score=159.03 Aligned_cols=298 Identities=14% Similarity=0.157 Sum_probs=206.4
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
-..|.-.++|+++|| +++++|+|..||.|.+|.-.. .....+.. ...-|.+.|.+++|+++|.+|++| +
T Consensus 201 ~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t-----~lHWH~~~V~~L~fS~~G~~LlSG----G 270 (792)
T KOG1963|consen 201 TVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCT-----LLHWHHDEVNSLSFSSDGAYLLSG----G 270 (792)
T ss_pred hhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccce-----EEEecccccceeEEecCCceEeec----c
Confidence 457888899999999 699999999999999997543 11111110 003688999999999999999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec------c
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR------N 371 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~ 371 (540)
..+.+.+|.+.+++ ++.+.. -.++|..+.++| ++++.+....|..|.+....+......+..+.. .
T Consensus 271 ~E~VLv~Wq~~T~~-kqfLPR------Lgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~ 342 (792)
T KOG1963|consen 271 REGVLVLWQLETGK-KQFLPR------LGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKT 342 (792)
T ss_pred cceEEEEEeecCCC-cccccc------cCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccc
Confidence 99999999999875 233333 347899999999 999999989999999988765543222222211 1
Q ss_pred cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc------------CccEEEEeecCCCCCceEEEEEc--
Q 009203 372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI------------ESKCMSVLPNPCDFNLFMVQTGT-- 437 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~-- 437 (540)
...+-.+.++++|.-+.++..+..|.|.+||+-+...+..... ...+.+++.+-.+ .++++.-
T Consensus 343 ~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g---s~maT~E~~ 419 (792)
T KOG1963|consen 343 RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG---SWMATLEAR 419 (792)
T ss_pred cccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc---eEEEEeeee
Confidence 1345567888999778888889999999999988766543221 1223344444443 5676652
Q ss_pred ------CC--CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CC-CEEEEEeCCCcEEEEeccCCC-------
Q 009203 438 ------PG--RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DG-LYITSGSADPVIHLFDIRYSA------- 500 (540)
Q Consensus 438 ------~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g-~~l~sg~~dg~i~iwd~~~~~------- 500 (540)
.| -.+++|-..........- ......|...+...++.+ .. ...++++.||.++||-+....
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~--T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s 497 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFILN--TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS 497 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeEEE--EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence 22 357788776544322111 112346777666666544 33 378999999999999985311
Q ss_pred -CcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 501 -NKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 501 -~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..+...-..|..++++++|+.||. +++++.|++|.+||+
T Consensus 498 ~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 498 NWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred ceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecC
Confidence 112222224788999999999996 556678999999985
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=7.9e-16 Score=147.80 Aligned_cols=271 Identities=12% Similarity=0.121 Sum_probs=170.7
Q ss_pred cCCCCeEEEeccc--------hhcccccCceEEEEEecCCCcEEEEE-eCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 204 SASPATIHCHTSN--------HVSSLHKRKLRSLSLNPVNEQLFVTS-ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 204 ~~~d~~i~~~~~~--------~~~~~h~~~V~~l~~spd~~~~l~tg-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
...++.|.+|+.. ..+ .+.+....++++|| +++|+++ ..++.|.+|++.....+ +..... ...
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~-----~~~ 79 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGAL-TFAAES-----PLP 79 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCce-EEeeee-----cCC
Confidence 3456666666542 111 23466888999996 7777655 45789999999732221 111111 112
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC-CceeEEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK-GRACVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVV 352 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~ 352 (540)
.....++|+|++++|+++. ..++.|.+|++++.. ....+..+.. ...+.+++++| ++++++ +...++.|.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~---~~~~~v~v~~~~~~g~~~~~~~~~~~----~~~~~~~~~~p-~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSAS---YNANCVSVSPLDKDGIPVAPIQIIEG----LEGCHSANIDP-DNRTLWVPCLKEDRIR 151 (330)
T ss_pred CCceEEEECCCCCEEEEEE---cCCCeEEEEEECCCCCCCCceeeccC----CCcccEeEeCC-CCCEEEEeeCCCCEEE
Confidence 2356899999999888872 358999999997431 1122222222 23367789999 887775 445669999
Q ss_pred EEecCCCCCccc-c-ceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCC--CCe--eeeec-------cCccE
Q 009203 353 LWSERDAEDSWK-P-KALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGV--GRA--DFKHQ-------IESKC 418 (540)
Q Consensus 353 iwd~~~~~~~~~-~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~--~~~--~~~~~-------~~~~~ 418 (540)
+||+.+...+.. . ..... ........++|+|+|++++++.. ++.|.+||+.. ++. +.... .....
T Consensus 152 v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEEECCCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 999986332110 0 00111 12344678999999999988876 89999999973 332 11111 11123
Q ss_pred EEEeecCCCCCceEEEEEc-CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEec
Q 009203 419 MSVLPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA-DPVIHLFDI 496 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~ 496 (540)
..+.++|++ ++++++. .++.|.+|++..........+.... ......+.|+|+|++|+++.. ++.|.+|++
T Consensus 231 ~~i~~~pdg---~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 231 ADIHITPDG---RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred eeEEECCCC---CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec----cccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 457788887 5666664 5789999999754432222221111 124567899999999998765 899999998
Q ss_pred cC
Q 009203 497 RY 498 (540)
Q Consensus 497 ~~ 498 (540)
+.
T Consensus 304 ~~ 305 (330)
T PRK11028 304 DG 305 (330)
T ss_pred cC
Confidence 64
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.4e-16 Score=153.90 Aligned_cols=308 Identities=16% Similarity=0.204 Sum_probs=222.3
Q ss_pred CCeEEEeccc-----hhcccccCceEEEEEecCCC--cEEEEEeCCceEEEEEcCCCCCcceeecccccCC---------
Q 009203 207 PATIHCHTSN-----HVSSLHKRKLRSLSLNPVNE--QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS--------- 270 (540)
Q Consensus 207 d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~--~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~--------- 270 (540)
+..|++|... .++.+|..+++.+.+.|... .++.+++.||.|++||...+..+.++........
T Consensus 36 ~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~ 115 (792)
T KOG1963|consen 36 GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQAD 115 (792)
T ss_pred CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhC
Confidence 5677777443 56899999999999998544 4678999999999999988766554432211000
Q ss_pred ------------------------------------------CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC
Q 009203 271 ------------------------------------------PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN 308 (540)
Q Consensus 271 ------------------------------------------~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~ 308 (540)
..|.. -.++.+++.|.+.+.. .+..+.+|+..
T Consensus 116 ~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~-----~~~~~~~~~v~ 189 (792)
T KOG1963|consen 116 ISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIV-----HMCKIHIYFVP 189 (792)
T ss_pred ccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEE-----EeeeEEEEEec
Confidence 01111 2455666666655554 56778888888
Q ss_pred CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC-CCCccccceeecccCCcceeEEEeccCCC
Q 009203 309 KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD-AEDSWKPKALHRNLHSSAVMGVAGMQQKQ 387 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 387 (540)
... +........-+|.-.+++.+++| +++++++|..||.|.+|.--. .........++. |...|++++|+++|.
T Consensus 190 ~~~--~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--H~~~V~~L~fS~~G~ 264 (792)
T KOG1963|consen 190 KHT--KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--HHDEVNSLSFSSDGA 264 (792)
T ss_pred ccc--eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEe--cccccceeEEecCCc
Confidence 653 22222222335666689999999 999999999999999996544 222333455555 889999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc----c
Q 009203 388 IVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE----S 463 (540)
Q Consensus 388 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~----~ 463 (540)
+|++|+..|.+.+|.+.+++..+....++.+..+.++|++ .+.+....|+.|.+....+.......-+.... .
T Consensus 265 ~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds---~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 265 YLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS---DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK 341 (792)
T ss_pred eEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCC---CeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence 9999999999999999999987778889999999999988 56777778999999988766544433332221 1
Q ss_pred CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-----------ccccceeEEEEcCCCCEEEEEE
Q 009203 464 SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-----------AHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 464 ~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-----------~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
....+-.+.++++|.-+.++..+..|.|.+||+.+ ...+..+. .+.-.|+.++.+-.|.+++|.-
T Consensus 342 ~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t--d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT--DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred ccccccceeEEEcCCCCceeecCCCceEEEEeccc--cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence 22355678899999777888888999999999987 33333332 1233678888888899988864
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=5.7e-17 Score=153.02 Aligned_cols=237 Identities=19% Similarity=0.247 Sum_probs=168.9
Q ss_pred ecCCCCeEEEeccc-------hhcc--cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 203 TSASPATIHCHTSN-------HVSS--LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 203 ~~~~d~~i~~~~~~-------~~~~--~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
..+..+.|-+|+.. .++. .....|+.+.|.|.+...||.++.||.|+||.+..+........ ......+|
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t-Pe~~lt~h 676 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT-PEKILTIH 676 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC-cceeeecc
Confidence 44557788888654 1222 23457999999998789999999999999999988765443322 22233689
Q ss_pred CCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203 274 RRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 274 ~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
.+.|+++.|+|- .+.|+++ +.|.+|.+||+.++.. ...+.+ |.+.|.+++|+| +|.++++.+.||+|+
T Consensus 677 ~eKI~slRfHPLAadvLa~a----syd~Ti~lWDl~~~~~---~~~l~g---HtdqIf~~AWSp-dGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVA----SYDSTIELWDLANAKL---YSRLVG---HTDQIFGIAWSP-DGRRIATVCKDGTLR 745 (1012)
T ss_pred cceEEEEEecchhhhHhhhh----hccceeeeeehhhhhh---hheecc---CcCceeEEEECC-CCcceeeeecCceEE
Confidence 999999999994 5688888 9999999999998732 344444 788899999999 999999999999999
Q ss_pred EEecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCCC----eEEEEECCCC--CeeeeeccCccEEEEeecC
Q 009203 353 LWSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGADK----RIIGFDAGVG--RADFKHQIESKCMSVLPNP 425 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~ 425 (540)
+|..+.++. ......+ ....--.+.|.-+|+++++.+.|. .|.+||..+- ..+.....+....-+..+-
T Consensus 746 Vy~Prs~e~----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~Y 821 (1012)
T KOG1445|consen 746 VYEPRSREQ----PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHY 821 (1012)
T ss_pred EeCCCCCCC----ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccc
Confidence 999998763 2222211 112334567777999998887764 5888887653 3343333322222222222
Q ss_pred CCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
+...+.++++|-.|..|.+|.+-.....+.
T Consensus 822 D~Ds~~lfltGKGD~~v~~yEv~~esPy~l 851 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKGDRFVNMYEVIYESPYLL 851 (1012)
T ss_pred cCCCceEEEecCCCceEEEEEecCCCceee
Confidence 223336889999999999999976664443
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.3e-17 Score=150.64 Aligned_cols=199 Identities=21% Similarity=0.249 Sum_probs=146.5
Q ss_pred eEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee
Q 009203 330 NSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD 409 (540)
Q Consensus 330 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 409 (540)
.+++|+. ++..+++|+.||++|||+...... .+....|...|.++.|+|||++|++.+.| ..++|+.+++..+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t-----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLT-----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchh-----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence 6899999 999999999999999999766542 33345588999999999999999999999 9999999999665
Q ss_pred eeecc---CccEEEEeecCC--CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203 410 FKHQI---ESKCMSVLPNPC--DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS 484 (540)
Q Consensus 410 ~~~~~---~~~~~~~~~~~~--~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 484 (540)
..... +.....+.|..+ +...++++....-+.|..||+...... ..+...+.. .....|++++.|++|+++|.
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 44331 112223334333 222233334445567888887655432 111111112 22347999999999999999
Q ss_pred EeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 485 GSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 485 g~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
|+.||.|.|++... .+.+... +.|...|+.+.|+||.+++++.+.|....|..
T Consensus 299 GT~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred eccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 99999999999987 4444433 47999999999999999999999988877754
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.8e-16 Score=158.10 Aligned_cols=254 Identities=19% Similarity=0.207 Sum_probs=178.7
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe-CCCCCEEEEEecCCcEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL-PWENPCFATGGSDHAVVL 353 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~i 353 (540)
.....+.|+|-...++++ .....|+|||.+.+ ..+..+.........|+.+.+- ..|..++++|+.||.|+|
T Consensus 1065 ~~pk~~~~hpf~p~i~~a----d~r~~i~vwd~e~~---~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAA----DDRERIRVWDWEKG---RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCCceeeecCCCceeEEc----CCcceEEEEecccC---ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 346678999999999998 77889999999976 4466665544445668888875 335678999999999999
Q ss_pred EecCCCC-----Cccccceeec--ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCC
Q 009203 354 WSERDAE-----DSWKPKALHR--NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPC 426 (540)
Q Consensus 354 wd~~~~~-----~~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 426 (540)
|+--... .+.....+.. .+-.+.-.-+.|.....+|++++.-..|+|||............+....--+.+++
T Consensus 1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc
Confidence 9754321 1100111110 11111114457877777777777788999999998777666555444443344444
Q ss_pred CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC--eEEEEEcCCCCE-EEEEeCCCcEEEEeccCCCCcc
Q 009203 427 DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA--LINQSWSPDGLY-ITSGSADPVIHLFDIRYSANKP 503 (540)
Q Consensus 427 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~g~~-l~sg~~dg~i~iwd~~~~~~~~ 503 (540)
-..+.++++|..||.|++||.+....... ......|... |..+.+.+.|-- |++|+.||.|++||++......
T Consensus 1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~----v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSL----VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred ccCCceEEEeecCCceEEeecccCCcccc----ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 44457999999999999999997654211 1133456666 999999987754 9999999999999999732333
Q ss_pred cccccccc--c-ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 504 SQSIRAHQ--K-RVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 504 ~~~~~~h~--~-~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..++..|. + ..+++..+++...+|+|+. +.|+||++
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 33333443 3 5999999999999999998 99999985
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=1.8e-16 Score=138.06 Aligned_cols=232 Identities=15% Similarity=0.175 Sum_probs=176.2
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
.+|+|.+|++|+..+|.+ ..+..|.||.....+.-+...++.. |...|++|+|+| ..+.|++|+.|..-++|
T Consensus 11 ~pitchAwn~drt~iAv~----~~~~evhiy~~~~~~~w~~~htls~---Hd~~vtgvdWap-~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVS----PNNHEVHIYSMLGADLWEPAHTLSE---HDKIVTGVDWAP-KSNRIVTCSHDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEec----cCCceEEEEEecCCCCceeceehhh---hCcceeEEeecC-CCCceeEccCCCCcccc
Confidence 679999999999999998 8899999999987654566777775 678899999999 99999999999999999
Q ss_pred ecC-CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee-----eeeccCccEEEEeecCCCC
Q 009203 355 SER-DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD-----FKHQIESKCMSVLPNPCDF 428 (540)
Q Consensus 355 d~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 428 (540)
... .+.- . +++....+....+++.|+|.++.|++|+....|.+|-++...-- ........+.++.|+|.+
T Consensus 83 ~~~~~~~W--k-ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn- 158 (361)
T KOG1523|consen 83 TQPSGGTW--K-PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN- 158 (361)
T ss_pred ccCCCCee--c-cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-
Confidence 994 4432 2 22333448899999999999999999999999999988754432 234456788999999988
Q ss_pred CceEEEEEcCCCeEEEEECCCCcce----------eeeecc-ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 429 NLFMVQTGTPGRQLRLYDIRLRQTE----------IHAFGW-KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 429 ~~~~l~~~~~dg~v~i~d~~~~~~~----------~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
.++++|+.|+..++|..--.... ...|+. ..+.....+.|..+.|+|+|..|+-.+.|..+.+-|..
T Consensus 159 --VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 159 --VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred --ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 78999999999999875321110 000110 11223456789999999999999999999999999988
Q ss_pred CCCCcccccccccccceeEEEEcC
Q 009203 498 YSANKPSQSIRAHQKRVFKAVWHY 521 (540)
Q Consensus 498 ~~~~~~~~~~~~h~~~i~~l~~s~ 521 (540)
.+ .+.+..+..-.-+..++.|-.
T Consensus 237 ~p-~~~v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 237 GP-SERVQSVATAQLPLLSVSWIS 259 (361)
T ss_pred CC-chhccchhhccCCceeeEeec
Confidence 64 223333332235666776643
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.2e-16 Score=158.10 Aligned_cols=238 Identities=14% Similarity=0.107 Sum_probs=161.4
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH 324 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 324 (540)
+..|.+||..... ...+ ..|...+.+.+|+|||+.|+.+... ..+..|++||+.++.. ..+..+.
T Consensus 183 ~~~i~i~d~dg~~-~~~l--------t~~~~~v~~p~wSPDG~~la~~s~~-~~~~~i~i~dl~tg~~-~~l~~~~---- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV--------NRSSQPLMSPAWSPDGSKLAYVSFE-NKKSQLVVHDLRSGAR-KVVASFR---- 247 (429)
T ss_pred eEEEEEECCCCCC-ceEe--------ccCCCccccceEcCCCCEEEEEEec-CCCcEEEEEeCCCCce-EEEecCC----
Confidence 5789999986543 3333 3566779999999999999887221 2345799999987632 2233222
Q ss_pred cccceeEEEEeCCCCCEEEEEe-cCCcEEEE--ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEE
Q 009203 325 VKGIINSIIFLPWENPCFATGG-SDHAVVLW--SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIG 400 (540)
Q Consensus 325 ~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~i 400 (540)
+....++|+| +++.|+.++ .+|.+.|| |+.++.. ..+. .+...+.+..|+|||+.|+.++ .+|...+
T Consensus 248 --g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~----~~lt--~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I 318 (429)
T PRK01742 248 --GHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTP----SQLT--SGAGNNTEPSWSPDGQSILFTSDRSGSPQV 318 (429)
T ss_pred --CccCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCe----Eeec--cCCCCcCCEEECCCCCEEEEEECCCCCceE
Confidence 2244689999 998887764 67765555 6665542 3332 3556688999999999877655 5677788
Q ss_pred EECCC--CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC
Q 009203 401 FDAGV--GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD 478 (540)
Q Consensus 401 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 478 (540)
|++.. +.... ..... ....|+|++ .+|+..+.++ +.+||+.++....... .+ ....+.|+||
T Consensus 319 ~~~~~~~~~~~~-l~~~~--~~~~~SpDG---~~ia~~~~~~-i~~~Dl~~g~~~~lt~-------~~--~~~~~~~sPd 382 (429)
T PRK01742 319 YRMSASGGGASL-VGGRG--YSAQISADG---KTLVMINGDN-VVKQDLTSGSTEVLSS-------TF--LDESPSISPN 382 (429)
T ss_pred EEEECCCCCeEE-ecCCC--CCccCCCCC---CEEEEEcCCC-EEEEECCCCCeEEecC-------CC--CCCCceECCC
Confidence 87643 32221 22222 346788887 5676666654 5669998776432111 11 2245789999
Q ss_pred CCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203 479 GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 479 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~ 522 (540)
|++|+.++.+|.+.+|.+....+.....+..|.+.+...+|+|-
T Consensus 383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 99999999999888888754447778888888888999999984
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=5.8e-16 Score=134.92 Aligned_cols=210 Identities=13% Similarity=0.172 Sum_probs=162.8
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
..+|+|.+|++| +..+|.+.....|.||.....+.-. ..... ..|...|++++|+|..+.|+++ +.|..-
T Consensus 10 ~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~-~~htl----s~Hd~~vtgvdWap~snrIvtc----s~drna 79 (361)
T KOG1523|consen 10 LEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWE-PAHTL----SEHDKIVTGVDWAPKSNRIVTC----SHDRNA 79 (361)
T ss_pred cCceeeeeecCC-CceEEeccCCceEEEEEecCCCCce-eceeh----hhhCcceeEEeecCCCCceeEc----cCCCCc
Confidence 368999999997 8999999999999999987765321 11111 5789999999999999999999 999999
Q ss_pred EEEecCCC-CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 303 SVLNLNKT-KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 303 ~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
++|....+ .-...+..+. +....+++.|+| ..+.|++|+....|.||-++....-|..+.+. ..+.+.|++++
T Consensus 80 yVw~~~~~~~WkptlvLlR----iNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhik-kPirStv~sld 153 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVLLR----INRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIK-KPIRSTVTSLD 153 (361)
T ss_pred cccccCCCCeeccceeEEE----eccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhC-Cccccceeeee
Confidence 99998433 2222222333 356799999999 99999999999999999998766433333222 34678899999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCC------------------CCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGV------------------GRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQL 442 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v 442 (540)
|+|++-++++|+.|+.+++|..-- |..+... ...+.+..+.|+|++ ..|+-.+.|..+
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG---~~lawv~Hds~v 230 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG---NRLAWVGHDSTV 230 (361)
T ss_pred ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC---CEeeEecCCCce
Confidence 999999999999999999997521 1112223 456788999999988 688888899999
Q ss_pred EEEECCCCc
Q 009203 443 RLYDIRLRQ 451 (540)
Q Consensus 443 ~i~d~~~~~ 451 (540)
.+-|.....
T Consensus 231 ~~~da~~p~ 239 (361)
T KOG1523|consen 231 SFVDAAGPS 239 (361)
T ss_pred EEeecCCCc
Confidence 999987664
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.5e-16 Score=146.47 Aligned_cols=224 Identities=19% Similarity=0.249 Sum_probs=156.3
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc------hhcccc
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN------HVSSLH 222 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~------~~~~~h 222 (540)
.++.||++-|+++.|..... .++++++|..+.+|+.. .|-.||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~-------------------------------lL~SGSDD~r~ivWd~~~~KllhsI~TgH 92 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE-------------------------------LLASGSDDTRLIVWDPFEYKLLHSISTGH 92 (758)
T ss_pred hhhccccceecceeecCCCC-------------------------------EEeecCCcceEEeecchhcceeeeeeccc
Confidence 46789999999999987743 68899999999999875 345799
Q ss_pred cCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCc---ceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCC
Q 009203 223 KRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSG---ASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADS 297 (540)
Q Consensus 223 ~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~---~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~ 297 (540)
...|.|+.|-|. +.+++++|..|..|+++|+...+.- .....+..+ ...|...|..++-.|++ ..+.++ +
T Consensus 93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~-~~cht~rVKria~~p~~Phtfwsa----s 167 (758)
T KOG1310|consen 93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRC-WSCHTDRVKRIATAPNGPHTFWSA----S 167 (758)
T ss_pred ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhh-hhhhhhhhhheecCCCCCceEEEe----c
Confidence 999999999995 4568999999999999999853211 011111111 14688899999999998 688888 9
Q ss_pred CCCeEEEEecCCCCCce----eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--------cccc
Q 009203 298 GDSQISVLNLNKTKGRA----CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED--------SWKP 365 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~ 365 (540)
.||+|+-+|++...... +...+.......-...|+..+|.+..+|++|+.|-..++||.+.... ...+
T Consensus 168 EDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p 247 (758)
T KOG1310|consen 168 EDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP 247 (758)
T ss_pred CCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC
Confidence 99999999998642100 11111110011224678999998999999999999999999543211 0000
Q ss_pred ------ceeecccCC--------c---ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe
Q 009203 366 ------KALHRNLHS--------S---AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA 408 (540)
Q Consensus 366 ------~~~~~~~~~--------~---~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 408 (540)
......+|. . .++-++|+|+|.-|++.-..-.|+++|+..++.
T Consensus 248 p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 248 PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 001111221 1 245678899998887766666899999977654
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=3.5e-16 Score=145.09 Aligned_cols=269 Identities=11% Similarity=0.116 Sum_probs=179.9
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCC-CCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-PKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
-|...|.|+.|+. +...+.+++.+-.++-||+.... ........+... .-|..+- +..=-...+.|+.+ +.|
T Consensus 12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~r-s~~~g~~~d~~~i~----s~D 84 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGR-SSGGGKGSDTLLIC----SND 84 (737)
T ss_pred ccceeEEeecccc-cceEEEeccCceEEEeecccchh-hhhhhCCcccCCcccccccc-ccCCCCCcceEEEE----cCC
Confidence 4667788999997 36666665555444455554332 221111111110 1121110 00001123367777 899
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
|.+.+.+-.. +..+... .|.+.+.+-.|+| +|.-|++++.||.|++|.-...- ..++ .....+|+|
T Consensus 85 Gkf~il~k~~----rVE~sv~---AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGML----RStl--~Q~~~~v~c 150 (737)
T KOG1524|consen 85 GRFVILNKSA----RVERSIS---AHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGML----RSTV--VQNEESIRC 150 (737)
T ss_pred ceEEEecccc----hhhhhhh---hhhhhhhhcccCC-CCceeeeecCCceEEEEeccchH----HHHH--hhcCceeEE
Confidence 9999987652 2233344 4778899999999 99999999999999999865432 1112 225678999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCC-CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVG-RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 458 (540)
++|.|+.+.++.+.. +.+.+=.+... +.+.-..+++-+.++.|++.+ .++++|+.|-..++||-..... .
T Consensus 151 ~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s---~lI~sgGED~kfKvWD~~G~~L-f---- 221 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS---NIIASGGEDFRFKIWDAQGANL-F---- 221 (737)
T ss_pred EEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccc---cceeecCCceeEEeecccCccc-c----
Confidence 999999887776654 35666665543 445556677889999999987 6999999999999999874432 1
Q ss_pred cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
....|..+|++++|.|+ ..++.++. ++++ +. +...+.|..++||+||..++.|+..|.+.+
T Consensus 222 ---~S~~~ey~ITSva~npd-~~~~v~S~-nt~R---~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 222 ---TSAAEEYAITSVAFNPE-KDYLLWSY-NTAR---FS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ---cCChhccceeeeeeccc-cceeeeee-eeee---ec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 33578899999999999 55665543 3343 11 124568999999999999999999998754
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=8.7e-17 Score=149.42 Aligned_cols=246 Identities=14% Similarity=0.131 Sum_probs=164.0
Q ss_pred ccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEE
Q 009203 214 TSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFS 291 (540)
Q Consensus 214 ~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s 291 (540)
+.+..|.||++.|+|++|+.| |.+|++|+.|-.+.|||....+.+..+. +||...|.++.|-|. ..++++
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~-------TgHtaNIFsvKFvP~tnnriv~s 112 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSIS-------TGHTANIFSVKFVPYTNNRIVLS 112 (758)
T ss_pred chhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeee-------cccccceeEEeeeccCCCeEEEe
Confidence 445678999999999999995 9999999999999999998765544442 699999999999983 457888
Q ss_pred EeecCCCCCeEEEEecCCCCCce----eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc-
Q 009203 292 AHTADSGDSQISVLNLNKTKGRA----CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK- 366 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 366 (540)
| ..|..|+++|+...+... ..........|...|..|+..|...+.+.+++.||+|+-||++.......-.
T Consensus 113 g----AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 113 G----AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred c----cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence 8 999999999998532211 1111122224677899999999555999999999999999999743200000
Q ss_pred ---e-eecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeee-ee-----ccCccEEEE-eecCCCCCceEEE
Q 009203 367 ---A-LHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADF-KH-----QIESKCMSV-LPNPCDFNLFMVQ 434 (540)
Q Consensus 367 ---~-~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~-~~-----~~~~~~~~~-~~~~~~~~~~~l~ 434 (540)
. ......--...|+..+|. ..+|++|+.|-..++||.+...... .. .....+.++ .|.|.. +
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h-----l- 262 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH-----L- 262 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc-----c-
Confidence 0 000112234678888884 5688899999999999965322211 00 001111111 122211 0
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS 499 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~ 499 (540)
...+|.+ ..-...++-++|+|+|.-|+..-..-.|++||+...
T Consensus 263 -kn~~gn~---------------------~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 263 -KNSQGNL---------------------DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred -cCccccc---------------------ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 0111100 000113577899999988877766677999999874
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.6e-15 Score=123.42 Aligned_cols=245 Identities=14% Similarity=0.190 Sum_probs=168.0
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC-----CCceeEEEecCCCeEEEEe
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR-----RWPEDIAWHPQGNSLFSAH 293 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~~~~~~~~~~l~s~~ 293 (540)
.++|.++|+.++|.. .+|++|+ ||.|+=|...................+-|. -.|+++-..|..+-|+.+
T Consensus 58 eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A- 132 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA- 132 (325)
T ss_pred ccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe-
Confidence 479999999999984 3667765 699999987654321111111111112222 348899999888877777
Q ss_pred ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee----
Q 009203 294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH---- 369 (540)
Q Consensus 294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---- 369 (540)
+.|+.++-||+++| .....+.+ |.+.|.++.--. ....+++|+.||++++||.++++++..+....
T Consensus 133 ---gGD~~~y~~dlE~G---~i~r~~rG---HtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~ 202 (325)
T KOG0649|consen 133 ---GGDGVIYQVDLEDG---RIQREYRG---HTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL 202 (325)
T ss_pred ---cCCeEEEEEEecCC---EEEEEEcC---Ccceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhh
Confidence 89999999999998 55667775 788899998855 55678899999999999999998743322221
Q ss_pred -cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 370 -RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 370 -~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
+......|.+++.+ ..++++|+ ...+.+|.++..++...+.....+..+.|..+ .+++++..+.|.-|.+.
T Consensus 203 lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d-----~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 203 LRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-----CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred cCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecc-----eEEEeccccceeeeeec
Confidence 12234567777765 46777655 45799999999999999998888888888764 67778888889999886
Q ss_pred CCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 009203 449 LRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLF 494 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iw 494 (540)
.--.. .........++..|+-. -++|-.++....+.|+
T Consensus 275 Gvl~a--------~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 275 GVLQA--------NIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cEEEE--------eccCCccceeeecccCCceEEEEecccceeeeee
Confidence 32111 11112223444455432 2455556666666665
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=2.3e-17 Score=160.40 Aligned_cols=232 Identities=17% Similarity=0.186 Sum_probs=180.7
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA 350 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 350 (540)
.||..+|.|+.|...|.++++| +.|..++||.+.++ .++....+ |.+.|+.++.+. ++.++++++.|..
T Consensus 187 lgH~naVyca~fDrtg~~Iitg----sdd~lvKiwS~et~---~~lAs~rG---hs~ditdlavs~-~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITG----SDDRLVKIWSMETA---RCLASCRG---HSGDITDLAVSS-NNTMIAAASNDKV 255 (1113)
T ss_pred HhhhhheeeeeeccccceEeec----Cccceeeeeeccch---hhhccCCC---Cccccchhccch-hhhhhhhcccCce
Confidence 4899999999999999999999 99999999998875 55666665 788999999998 8889999999999
Q ss_pred EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-----eccCccEEEEeecC
Q 009203 351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-----HQIESKCMSVLPNP 425 (540)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~ 425 (540)
|++|.+..+.. +..+ .+|++.|++++|+|-. +.+.||++++||.+-...++. ......+.++.+..
T Consensus 256 IrvWrl~~~~p---vsvL--rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 256 IRVWRLPDGAP---VSVL--RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN 326 (1113)
T ss_pred EEEEecCCCch---HHHH--hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc
Confidence 99999999875 3333 5699999999999943 788999999999982222221 22234445555554
Q ss_pred CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCccc
Q 009203 426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPS 504 (540)
Q Consensus 426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~ 504 (540)
.+ .-+++|+.|+.-..|.+.... .+...+.-+.++.+- .+.+++-.+..+.+|++.. +..+
T Consensus 327 ~~---~~f~Tgs~d~ea~n~e~~~l~-------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~--g~l~ 388 (1113)
T KOG0644|consen 327 NG---DRFLTGSRDGEARNHEFEQLA-------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT--GQLL 388 (1113)
T ss_pred cc---cccccccCCcccccchhhHhh-------------hhccceEEEeccccccccceeeeeeeEeeeeeccc--chhh
Confidence 43 468889999888888765322 122233333333332 4667777888999999998 7889
Q ss_pred ccccccccceeEEEEcCCCC-EEEEEEcCCcEEEEeC
Q 009203 505 QSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLHKI 540 (540)
Q Consensus 505 ~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw~l 540 (540)
+.+.+|...+..+.++|-.. ...+++.||...|||+
T Consensus 389 H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 389 HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred hhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 99999999999999999765 5678999999999996
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.8e-16 Score=142.07 Aligned_cols=203 Identities=17% Similarity=0.134 Sum_probs=144.2
Q ss_pred EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN 306 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd 306 (540)
.+++|++| |..|++|+.||++|||+......+... ..|...|.++.|+|||++|++. +.| ..+||+
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e--------~~~~~eV~DL~FS~dgk~lasi----g~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEE--------IAHHAEVKDLDFSPDGKFLASI----GAD-SARVWS 213 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhh--------HhhcCccccceeCCCCcEEEEe----cCC-ceEEEE
Confidence 89999995 899999999999999998776544444 4788999999999999999999 888 999999
Q ss_pred cCCCCCceeEEeecCCCCcccceeEEEEeCCCC---CEE--EEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN---PCF--ATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l--~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
.+++. ++....... .......+.|+. ++ .++ +....-+.|+.||+.........+..........|.+++
T Consensus 214 ~~~g~---~~a~~t~~~-k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 214 VNTGA---ALARKTPFS-KDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred eccCc---hhhhcCCcc-cchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 99882 233332111 234466778876 44 222 223344567776664322100001111111345799999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ 461 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 461 (540)
.+++|++++.|+.||.|-|++..+-+.++.
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~-------------------------------------------------- 318 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQY-------------------------------------------------- 318 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEe--------------------------------------------------
Confidence 999999999999999999998875443110
Q ss_pred ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
....|...|+.+.|+||.+++++.+.|..+.|..+..
T Consensus 319 vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 319 VKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 1135777899999999999999988898888887764
No 204
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=1.1e-14 Score=127.32 Aligned_cols=279 Identities=13% Similarity=0.153 Sum_probs=188.9
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203 228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL 307 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~ 307 (540)
-++|||+ |+++|+.+.- .+.|-|..+-+...-+.. -+.|.-+.|..|.-+++.+. ..++.|.+|++
T Consensus 13 ~c~fSp~-g~yiAs~~~y-rlviRd~~tlq~~qlf~c---------ldki~yieW~ads~~ilC~~---yk~~~vqvwsl 78 (447)
T KOG4497|consen 13 FCSFSPC-GNYIASLSRY-RLVIRDSETLQLHQLFLC---------LDKIVYIEWKADSCHILCVA---YKDPKVQVWSL 78 (447)
T ss_pred ceeECCC-CCeeeeeeee-EEEEeccchhhHHHHHHH---------HHHhhheeeeccceeeeeee---eccceEEEEEe
Confidence 4689995 9999998855 788888887654333321 13467799998888776652 78899999999
Q ss_pred CCCCCceeEEeecCCCCcccceeEEEEeCCCC-CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC
Q 009203 308 NKTKGRACVTFLDDKPHVKGIINSIIFLPWEN-PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK 386 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 386 (540)
... +-...++. ..+.+.+++|+| +| .+|.+...|-.|.+|.+.+... ..+.. ....+..++|+|||
T Consensus 79 ~Qp---ew~ckIde---g~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~----~~~~~--pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 79 VQP---EWYCKIDE---GQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKG----YLLPH--PKTNVKGYAFHPDG 145 (447)
T ss_pred ecc---eeEEEecc---CCCcceeeeECC-CcceEeeeecceeEEEEEEecccee----EEecc--cccCceeEEECCCC
Confidence 865 22333332 245699999999 77 5667777899999999998764 22222 23345788899999
Q ss_pred CEEEEEeC------------------------------------CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203 387 QIVLSAGA------------------------------------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 387 ~~l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (540)
++.+.++. +..+.+||.--.-.+..+.-+-.+..+.|+|.+
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~--- 222 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN--- 222 (447)
T ss_pred ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecccc---
Confidence 88776653 123445554322223334445567788899977
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeee------------------------------------------------------
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHA------------------------------------------------------ 456 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~------------------------------------------------------ 456 (540)
++|++|+.|+.+++.+--+.+.....
T Consensus 223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p 302 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP 302 (447)
T ss_pred ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence 79999999999988664332110000
Q ss_pred -----eccccccCccccCeEEEEEcCCCCEEEEEeCC--CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203 457 -----FGWKQESSESQSALINQSWSPDGLYITSGSAD--PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 457 -----~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~ 529 (540)
+........-...+.-++||+|..|+++-.+. +.+.+||+++ .+ +..+-....+|....|+|....|+.+
T Consensus 303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~--l~-l~avLiQk~piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN--LK-LHAVLIQKHPIRAFEWDPGRPRLVVC 379 (447)
T ss_pred eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh--hh-hhhhhhhccceeEEEeCCCCceEEEE
Confidence 00000111123356678999999999987543 6799999996 33 33333356689999999999988888
Q ss_pred EcCCcEEEEe
Q 009203 530 SSDLNIGLHK 539 (540)
Q Consensus 530 ~~dg~v~iw~ 539 (540)
.....+++|.
T Consensus 380 tg~srLY~W~ 389 (447)
T KOG4497|consen 380 TGKSRLYFWA 389 (447)
T ss_pred cCCceEEEEc
Confidence 8788898885
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=1e-15 Score=142.22 Aligned_cols=222 Identities=17% Similarity=0.147 Sum_probs=150.0
Q ss_pred eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe-----CCCCCEEEEEecCCcEE
Q 009203 278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL-----PWENPCFATGGSDHAVV 352 (540)
Q Consensus 278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~~l~s~~~dg~i~ 352 (540)
....++-.|++|+.. ....+.+|+.+.+.. . -..+...........|-+|+ | .+--++.|-.-|.|.
T Consensus 127 ~~~~~~~~gd~lcFn-----vg~~lyv~~~~g~~~-~-~~pi~k~~y~gt~P~cHdfn~~~a~~-~g~dllIGf~tGqvq 198 (636)
T KOG2394|consen 127 TNTNQSGKGDRLCFN-----VGRELYVYSYRGAAD-L-SKPIDKREYKGTSPTCHDFNSFTATP-KGLDLLIGFTTGQVQ 198 (636)
T ss_pred eeccccCCCCEEEEe-----cCCeEEEEEccCcch-h-ccchhhhcccCCCCceecccccccCC-CCcceEEeeccCceE
Confidence 344445566677663 556688888874311 1 11111000111224455552 3 555677788889999
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCC--------------Ceee-------
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVG--------------RADF------- 410 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~--------------~~~~------- 410 (540)
+.|....+. .++...........|+++.|-|.+ ..++++..+|.+++||.... ....
T Consensus 199 ~idp~~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk 277 (636)
T KOG2394|consen 199 LIDPINFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSK 277 (636)
T ss_pred EecchhhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecc
Confidence 998876331 111111112245789999998844 56667788999999976321 0000
Q ss_pred --------eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203 411 --------KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI 482 (540)
Q Consensus 411 --------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 482 (540)
.....+.+..++|+|++ .+||+.+.||.++|||..+.+... ..+.--+...|++|||||+||
T Consensus 278 ~~rNPv~~w~~~~g~in~f~FS~DG---~~LA~VSqDGfLRvF~fdt~eLlg-------~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 278 KTRNPVARWHIGEGSINEFAFSPDG---KYLATVSQDGFLRIFDFDTQELLG-------VMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred ccCCccceeEeccccccceeEcCCC---ceEEEEecCceEEEeeccHHHHHH-------HHHhhccceEEEEEcCCccEE
Confidence 01113467788999977 799999999999999999766432 223334689999999999999
Q ss_pred EEEeCCCcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203 483 TSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520 (540)
Q Consensus 483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s 520 (540)
++|++|--|.||.+.. .+.+..-.+|..+|..++|.
T Consensus 348 vtGGEDDLVtVwSf~e--rRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEE--RRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EecCCcceEEEEEecc--ceEEEeccccccceeeEeec
Confidence 9999999999999997 78899999999999999998
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.9e-14 Score=126.42 Aligned_cols=249 Identities=14% Similarity=0.193 Sum_probs=164.9
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCeE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQI 302 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i 302 (540)
-.+..++|++ .-.-+|++..|-.|++|+-.. .+...+. ......|++++|-|.+. .|++| --+-|
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lk-------s~sQrnvtclawRPlsaselavg-----Cr~gI 164 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLK-------SVSQRNVTCLAWRPLSASELAVG-----CRAGI 164 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceec-------chhhcceeEEEeccCCcceeeee-----eccee
Confidence 4688899998 466788999999999999876 3333332 12345699999999654 55554 56669
Q ss_pred EEEecCCCCC---------ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeeccc
Q 009203 303 SVLNLNKTKG---------RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 303 ~vwd~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
.+|....... ..+.+.+... +| .+|++|+|++ ||..+++++. |..|.|||..++.++ . +. ..
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~p-gh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~---p-L~-~~ 236 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDP-GH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKI---P-LI-PK 236 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCC-CC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcc---c-cc-cc
Confidence 9997754211 1122233332 23 6799999999 9999998875 567999999998852 2 22 12
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
..+.+.-+.|||||.+|++++-|+..++|+... -......-..+.+...+|+|.+. .+|++.+.... +|.+.-.+
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGs--fLLf~~sgsp~--lysl~f~~ 312 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGS--FLLFACSGSPR--LYSLTFDG 312 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCC--EEEEEEcCCce--EEEEeecC
Confidence 557788999999999999999999999996543 33333334445888999999985 34555544333 44432211
Q ss_pred ceeee--------------eccccccC---ccccCeEEEEEcCCCCEEEEEeCCC--------cEEEEeccC
Q 009203 452 TEIHA--------------FGWKQESS---ESQSALINQSWSPDGLYITSGSADP--------VIHLFDIRY 498 (540)
Q Consensus 452 ~~~~~--------------~~~~~~~~---~~~~~v~~~~~sp~g~~l~sg~~dg--------~i~iwd~~~ 498 (540)
..... +....... -..+.+.+++|+|.|.+||+.-..+ .|.+||.+.
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 11000 00000001 1245788999999999999875433 467788774
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=9e-17 Score=146.51 Aligned_cols=228 Identities=12% Similarity=0.192 Sum_probs=180.8
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE 356 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 356 (540)
...+.++.+|.+|+.+ +..|.|..+|+.++.- ...+.. ...|.++.|.. +.++||++- ...++|||-
T Consensus 132 PY~~~ytrnGrhlllg----GrKGHlAa~Dw~t~~L---~~Ei~v----~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~ 198 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLG----GRKGHLAAFDWVTKKL---HFEINV----METVRDVTFLH-NEQFFAVAQ-KKYVYVYDN 198 (545)
T ss_pred CeeeeecCCccEEEec----CCccceeeeeccccee---eeeeeh----hhhhhhhhhhc-chHHHHhhh-hceEEEecC
Confidence 4578999999999999 9999999999998733 333322 34589999998 777777765 478999998
Q ss_pred CCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEE
Q 009203 357 RDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQT 435 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 435 (540)
..-+. ..+. ....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+... +....+.-+|-+ ..+-+
T Consensus 199 ~GtEl----HClk---~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N---aVih~ 268 (545)
T KOG1272|consen 199 NGTEL----HCLK---RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN---AVIHL 268 (545)
T ss_pred CCcEE----eehh---hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc---ceEEE
Confidence 76552 2222 4467999999999999999999999999999999988765544 556677788877 68899
Q ss_pred EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccccee
Q 009203 436 GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF 515 (540)
Q Consensus 436 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~ 515 (540)
|...|+|.+|.....+..... -.|.++|.++++.++|+|+||.+.|..++|||+++ ...+.++.. ..+..
T Consensus 269 GhsnGtVSlWSP~skePLvKi-------LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~--~~ql~t~~t-p~~a~ 338 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVKI-------LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN--FYQLHTYRT-PHPAS 338 (545)
T ss_pred cCCCceEEecCCCCcchHHHH-------HhcCCCcceEEECCCCcEEeecccccceeEeeecc--ccccceeec-CCCcc
Confidence 999999999999988865543 46899999999999999999999999999999997 444444443 34577
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 516 KAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 516 ~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+++|..| ++++|....|.||.
T Consensus 339 ~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 339 NLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred cccccccc--ceeeecCCeeeeeh
Confidence 88898776 44555666888884
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=1.7e-14 Score=128.38 Aligned_cols=231 Identities=13% Similarity=0.139 Sum_probs=164.2
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--CcEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD--HAVV 352 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--g~i~ 352 (540)
..+..+.|+.+...|..| +.|| .++|....- .++..... ....|.-+-|+. .++|..+.+ ..++
T Consensus 6 ~ti~~~~~Nqd~~~lsvG----s~~G-yk~~~~~~~--~k~~~~~~----~~~~IvEmLFSS---SLvaiV~~~qpr~Lk 71 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVG----SKDG-YKIFSCSPF--EKCFSKDT----EGVSIVEMLFSS---SLVAIVSIKQPRKLK 71 (391)
T ss_pred cceeeeeeccceeEEEcc----CCCc-eeEEecCch--HHhhcccC----CCeEEEEeeccc---ceeEEEecCCCceEE
Confidence 346677799988888887 7777 677777643 12222111 123466666754 566655544 3488
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc----CccEEEEeecCCCC
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI----ESKCMSVLPNPCDF 428 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~ 428 (540)
++++..+..+. . ......|.++.++. +.|+++-.+ .|+|||+++-+.+..... ...+.++.+++.+
T Consensus 72 v~~~Kk~~~IC---e---~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n- 141 (391)
T KOG2110|consen 72 VVHFKKKTTIC---E---IFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN- 141 (391)
T ss_pred EEEcccCceEE---E---EecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCC-
Confidence 99988765321 1 12557799999874 555555554 499999999888765433 2345566666554
Q ss_pred CceEEEEE--cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCc-EEEEeccCCCCcccc
Q 009203 429 NLFMVQTG--TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPV-IHLFDIRYSANKPSQ 505 (540)
Q Consensus 429 ~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~-i~iwd~~~~~~~~~~ 505 (540)
.+++.- ...|.|.+||+.+-+... .+..|.+.+-+++|+++|.+||++++.|+ ||||.+.+ +..+.
T Consensus 142 --~ylAyp~s~t~GdV~l~d~~nl~~v~-------~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--G~kl~ 210 (391)
T KOG2110|consen 142 --CYLAYPGSTTSGDVVLFDTINLQPVN-------TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--GQKLY 210 (391)
T ss_pred --ceEEecCCCCCceEEEEEcccceeee-------EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--ccEee
Confidence 466543 335899999998766433 44689999999999999999999999986 68999987 77777
Q ss_pred ccccc--ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 506 SIRAH--QKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 506 ~~~~h--~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.|+.. ...|.+++|+|++++|++.|..++|+||+|
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 77633 347899999999999999999999999985
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.6e-14 Score=141.23 Aligned_cols=238 Identities=12% Similarity=0.099 Sum_probs=156.8
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV 325 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 325 (540)
..|.+||...... ..+ ..+...+.+.+|+|||+.|+..+. ...+..|.+|++.++.. ..+..+.
T Consensus 179 ~~l~~~d~dg~~~-~~l--------t~~~~~~~~p~wSPDG~~la~~s~-~~g~~~i~i~dl~~G~~-~~l~~~~----- 242 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVV--------HRSPQPLMSPAWSPDGSKLAYVTF-ESGRSALVIQTLANGAV-RQVASFP----- 242 (429)
T ss_pred eeEEEEcCCCCCC-EEe--------ecCCCceeeeEEcCCCCEEEEEEe-cCCCcEEEEEECCCCCe-EEccCCC-----
Confidence 3688888875432 233 134456889999999999887522 13456899999987632 2222222
Q ss_pred ccceeEEEEeCCCCCEEEEE-ecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-C--eEE
Q 009203 326 KGIINSIIFLPWENPCFATG-GSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RII 399 (540)
Q Consensus 326 ~~~v~~~~~~p~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~ 399 (540)
+.+..++|+| +++.|+.. +.+| .|++||+.++.. ..+.. +...+....|+|||+.|+..+.+ + .|+
T Consensus 243 -~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~----~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 243 -RHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI----RQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred -CCcCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCE----EEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence 2345689999 88877754 4444 589999988763 33322 34567889999999988877764 3 466
Q ss_pred EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC-C--CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 400 GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP-G--RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 400 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
++|+.++................|+|++ .+++..+. + ..|.+||+.++...... .. .......|+
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~SpDG---~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-------~~--~~~~~p~~S 382 (429)
T PRK03629 315 KVNINGGAPQRITWEGSQNQDADVSSDG---KFMVMVSSNGGQQHIAKQDLATGGVQVLT-------DT--FLDETPSIA 382 (429)
T ss_pred EEECCCCCeEEeecCCCCccCEEECCCC---CEEEEEEccCCCceEEEEECCCCCeEEeC-------CC--CCCCCceEC
Confidence 6677766553333333344567889987 45554433 2 45888999877532211 11 123457899
Q ss_pred CCCCEEEEEeCCCc---EEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203 477 PDGLYITSGSADPV---IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 477 p~g~~l~sg~~dg~---i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~ 522 (540)
|||++|+.++.++. +.+++++ +.....+..|.+.+...+|+|-
T Consensus 383 pDG~~i~~~s~~~~~~~l~~~~~~---G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 383 PNGTMVIYSSSQGMGSVLNLVSTD---GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECC---CCCeEECccCCCCcCCcccCCC
Confidence 99999999887764 6677775 5666777778888999999873
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=4.3e-15 Score=129.92 Aligned_cols=287 Identities=12% Similarity=0.088 Sum_probs=178.2
Q ss_pred EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR 275 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~ 275 (540)
+.....+..|.+|+.. .-+..-.+++.+++||||+..+|.+...|-.|.||.+.+.....-. .-+.
T Consensus 64 lC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~---------~pK~ 134 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP---------HPKT 134 (447)
T ss_pred eeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec---------cccc
Confidence 3444568899999776 2356667899999999985578888899999999999886542211 1223
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.+..++|+|||++.+.+ +.-......++...+.-..+..+.. ..-..+++.|+| ||+.|+. ||
T Consensus 135 ~~kg~~f~~dg~f~ai~----sRrDCkdyv~i~~c~~W~ll~~f~~---dT~DltgieWsP-dg~~laV---------wd 197 (447)
T KOG4497|consen 135 NVKGYAFHPDGQFCAIL----SRRDCKDYVQISSCKAWILLKEFKL---DTIDLTGIEWSP-DGNWLAV---------WD 197 (447)
T ss_pred CceeEEECCCCceeeee----ecccHHHHHHHHhhHHHHHHHhcCC---CcccccCceECC-CCcEEEE---------ec
Confidence 46789999999998887 3322211111111111111122221 122356788888 7766654 33
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--------------------------
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD-------------------------- 409 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------- 409 (540)
.--.-. .... ...-.+..+.|+|.+++|+.|+.|+.+|+.+--+-+..
T Consensus 198 ~~Leyk---v~aY---e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 198 NVLEYK---VYAY---ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred chhhhe---eeee---eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 221110 0011 12245677888888888888888887776553211000
Q ss_pred --------------------------------eeec---------cCccEEEEeecCCCCCceEEEEEcC--CCeEEEEE
Q 009203 410 --------------------------------FKHQ---------IESKCMSVLPNPCDFNLFMVQTGTP--GRQLRLYD 446 (540)
Q Consensus 410 --------------------------------~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~--dg~v~i~d 446 (540)
..+. ....+.-++|+++. .++++-.. -+.+.+||
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds---~y~aTrnd~~PnalW~Wd 348 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS---TYAATRNDKYPNALWLWD 348 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc---eEEeeecCCCCceEEEEe
Confidence 0000 01123346677766 46655433 25699999
Q ss_pred CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE
Q 009203 447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL 526 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l 526 (540)
++..+.... -....+|....|+|....|+.+.....+++|.... ..........-.|..+.|.-+|..+
T Consensus 349 lq~l~l~av--------LiQk~piraf~WdP~~prL~vctg~srLY~W~psg---~~~V~vP~~GF~i~~l~W~~~g~~i 417 (447)
T KOG4497|consen 349 LQNLKLHAV--------LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG---PRVVGVPKKGFNIQKLQWLQPGEFI 417 (447)
T ss_pred chhhhhhhh--------hhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC---ceEEecCCCCceeeeEEecCCCcEE
Confidence 986653221 12345899999999998888888788899998883 3333333344679999999999999
Q ss_pred EEEEcCC
Q 009203 527 ISISSDL 533 (540)
Q Consensus 527 ~s~~~dg 533 (540)
+.++.|.
T Consensus 418 ~l~~kDa 424 (447)
T KOG4497|consen 418 VLCGKDA 424 (447)
T ss_pred EEEcCCc
Confidence 9998885
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.5e-15 Score=147.82 Aligned_cols=232 Identities=12% Similarity=0.134 Sum_probs=153.2
Q ss_pred CCeEEEeccc----hhcccccCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCcee
Q 009203 207 PATIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED 279 (540)
Q Consensus 207 d~~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 279 (540)
+..+.+|+.. +.+..|...|.+.+|+|| |+.|+.++.+ ..|.+||+.+++.. .+ ... .+| ...
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~-~l-~~~----~g~---~~~ 252 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARK-VV-ASF----RGH---NGA 252 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceE-EE-ecC----CCc---cCc
Confidence 5688888654 446788889999999997 7878777643 46999999876531 11 111 233 346
Q ss_pred EEEecCCCeEEEEeecCCCCCeEEEE--ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEec
Q 009203 280 IAWHPQGNSLFSAHTADSGDSQISVL--NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSE 356 (540)
Q Consensus 280 ~~~~~~~~~l~s~~~~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~ 356 (540)
++|+|||+.|+.+. +.+|.+.|| |+.++ . ...+.. +...+....|+| ++..|+.++ .+|...||++
T Consensus 253 ~~wSPDG~~La~~~---~~~g~~~Iy~~d~~~~---~-~~~lt~---~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 253 PAFSPDGSRLAFAS---SKDGVLNIYVMGANGG---T-PSQLTS---GAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred eeECCCCCEEEEEE---ecCCcEEEEEEECCCC---C-eEeecc---CCCCcCCEEECC-CCCEEEEEECCCCCceEEEE
Confidence 89999999888762 356765555 55543 2 223332 345578899999 888776554 5788888887
Q ss_pred CCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEE
Q 009203 357 RDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 436 (540)
...... ...+ .+.. ....|+|+|+.|+.++.++ +.+||+.++........ ....+..|+|++ .+|+.+
T Consensus 322 ~~~~~~--~~~l---~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG---~~i~~~ 389 (429)
T PRK01742 322 SASGGG--ASLV---GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNG---IMIIYS 389 (429)
T ss_pred ECCCCC--eEEe---cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCC---CEEEEE
Confidence 543211 1112 2332 4578999999999888765 55699988865432211 223456789987 688888
Q ss_pred cCCCeEEEEECCC--CcceeeeeccccccCccccCeEEEEEcCC
Q 009203 437 TPGRQLRLYDIRL--RQTEIHAFGWKQESSESQSALINQSWSPD 478 (540)
Q Consensus 437 ~~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 478 (540)
+.++.+.+|++.+ +.... .+..|.+.+...+|+|-
T Consensus 390 s~~g~~~~l~~~~~~G~~~~-------~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 390 STQGLGKVLQLVSADGRFKA-------RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EcCCCceEEEEEECCCCceE-------EccCCCCCCCCcccCCC
Confidence 8888888887632 33211 34566777888999984
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=2.8e-13 Score=120.71 Aligned_cols=241 Identities=11% Similarity=0.156 Sum_probs=167.7
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...+..+.|+-| ...|..|+.|| -++|+.+.-...... ......|.-+-|+. .++|.... .....+
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~~~--------~~~~~~IvEmLFSS--SLvaiV~~--~qpr~L 70 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCFSK--------DTEGVSIVEMLFSS--SLVAIVSI--KQPRKL 70 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhhcc--------cCCCeEEEEeeccc--ceeEEEec--CCCceE
Confidence 456777889985 88889999887 677877654321000 01122344555654 45555511 333568
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
++.+...... -|-..+ ...|.++.++. ++|+++-.+ .|+|||+.+.+.+..+... ..+...+.++.+
T Consensus 71 kv~~~Kk~~~-ICe~~f------pt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~--~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 71 KVVHFKKKTT-ICEIFF------PTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETT--PPNPKGLCALSP 137 (391)
T ss_pred EEEEcccCce-EEEEec------CCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhcc--CCCccceEeecc
Confidence 8888875421 222222 34699999954 677776654 4999999998864333322 235566777777
Q ss_pred ccCCCEEEEEe--CCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCe-EEEEECCCCcceeeeec
Q 009203 383 MQQKQIVLSAG--ADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQ-LRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 383 s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~ 458 (540)
++.+.+++.-+ ..|.|.+||+.+-+.+.. ..+.+.+.+++|+++| .+||+++..|+ |+||.+.+++.......
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G---~llATASeKGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG---TLLATASEKGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC---CEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence 77777888633 368899999998887655 4566888899999998 79999999998 79999998886543221
Q ss_pred cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
......|.+++|+|++.+|++.+..++|+||.++.
T Consensus 215 -----G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 215 -----GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -----CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 01134689999999999999999999999999874
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=2.7e-15 Score=127.29 Aligned_cols=266 Identities=14% Similarity=0.155 Sum_probs=170.9
Q ss_pred ecCCCCeEEEeccc-----hhcc-cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCC
Q 009203 203 TSASPATIHCHTSN-----HVSS-LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW 276 (540)
Q Consensus 203 ~~~~d~~i~~~~~~-----~~~~-~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~ 276 (540)
++..-+.+++|... ..++ .|...|+.+.--| + .-|.+-+.|+.+.+|++.....+. -|.-.
T Consensus 30 sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s~~i~-----------i~Si~ 96 (323)
T KOG0322|consen 30 SGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAYSAFIS-----------IHSIV 96 (323)
T ss_pred cccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEEccCcceEE-----------Eeeee
Confidence 34456788888654 3355 6778999999998 3 568888999999999998743211 12222
Q ss_pred ceeEEEec-----CCC---eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC-CCcccceeEEEEeCCCCC--EEEEE
Q 009203 277 PEDIAWHP-----QGN---SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK-PHVKGIINSIIFLPWENP--CFATG 345 (540)
Q Consensus 277 V~~~~~~~-----~~~---~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~--~l~s~ 345 (540)
++++-|.+ .++ .++.. ...+.|. +.+-|... ...+...... ....+.+.|..+...++. +++.|
T Consensus 97 ~nslgFCrfSl~~~~k~~eqll~y-p~rgsde-~h~~D~g~---~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 97 VNSLGFCRFSLVKKPKNSEQLLEY-PSRGSDE-THKQDGGD---TTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred ccccccccceeccCCCcchhheec-CCcccch-hhhhccCc---cceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 34444433 111 12221 0001111 22222221 1122222111 123456777775443443 45678
Q ss_pred ecCCcEEEEecCCCCCccccc-----eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC--Ceee--eec-cC
Q 009203 346 GSDHAVVLWSERDAEDSWKPK-----ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG--RADF--KHQ-IE 415 (540)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~--~~~-~~ 415 (540)
..+|.+.+||+.++..+..+. ......|..+|.++.|.+.-..=++|+.+..+..|++... .... .+. ..
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn 251 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN 251 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence 889999999999873211111 1122458999999999875555567788888999988643 2211 111 23
Q ss_pred ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 416 SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
..+..+..-|++ +++++++.|+.|++|..++..... .++.|...|++++|+|+...+|+++.|++|.+|+
T Consensus 252 pGv~gvrIRpD~---KIlATAGWD~RiRVyswrtl~pLA-------VLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 252 PGVSGVRIRPDG---KILATAGWDHRIRVYSWRTLNPLA-------VLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred CCccceEEccCC---cEEeecccCCcEEEEEeccCCchh-------hhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 345556666776 799999999999999999887543 5677999999999999999999999999999998
Q ss_pred c
Q 009203 496 I 496 (540)
Q Consensus 496 ~ 496 (540)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 6
No 214
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.5e-15 Score=137.99 Aligned_cols=279 Identities=15% Similarity=0.185 Sum_probs=200.4
Q ss_pred eEEecCCCCeEEEeccc------hhcccccCceEEEEEecCC-CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203 200 LVRTSASPATIHCHTSN------HVSSLHKRKLRSLSLNPVN-EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK 272 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~------~~~~~h~~~V~~l~~spd~-~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 272 (540)
.++++++|..+.+|+.. ....||...|.--.|-|.. .+.+++++.||.|++=.+...+........ ..
T Consensus 156 ~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-----~~ 230 (559)
T KOG1334|consen 156 VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-----AP 230 (559)
T ss_pred eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec-----cc
Confidence 47789999999999775 2357999999988888753 457899999999999877654432211111 47
Q ss_pred CCCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203 273 HRRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV 351 (540)
Q Consensus 273 h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 351 (540)
|.++|..++.-|+.. -|.++ +.|+.+.-+|+..+.....+.....+....-....++..|.+...+++|+.|..+
T Consensus 231 h~g~vhklav~p~sp~~f~S~----geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~ 306 (559)
T KOG1334|consen 231 HEGPVHKLAVEPDSPKPFLSC----GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA 306 (559)
T ss_pred ccCccceeeecCCCCCccccc----ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence 889999999999765 67788 9999999999998755444443332111112578899999777799999999999
Q ss_pred EEEecCCCCCc--------cccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe------------e--
Q 009203 352 VLWSERDAEDS--------WKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA------------D-- 409 (540)
Q Consensus 352 ~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------------~-- 409 (540)
++||.+.-... ..+..+.. ...-.|++++|+.++.-|++...|-.|++|.-..+.- +
T Consensus 307 RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~ 385 (559)
T KOG1334|consen 307 RVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR 385 (559)
T ss_pred hhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccch
Confidence 99998764321 01111111 2345699999998888888888888999995433211 0
Q ss_pred -e-eeccCccEEEEee-cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203 410 -F-KHQIESKCMSVLP-NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 410 -~-~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
+ .|.....+-.+-| .|.. .++++|+.-|.|.||+-.+++.... +.+...-|+|+.=+|.-.+||+.+
T Consensus 386 vYKGHrN~~TVKgVNFfGPrs---EyVvSGSDCGhIFiW~K~t~eii~~-------MegDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 386 VYKGHRNSRTVKGVNFFGPRS---EYVVSGSDCGHIFIWDKKTGEIIRF-------MEGDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred hhcccccccccceeeeccCcc---ceEEecCccceEEEEecchhHHHHH-------hhcccceEeccCCCCCCchhhccC
Confidence 1 1222334444544 3433 6999999999999999998875432 334444899999999999999999
Q ss_pred CCCcEEEEeccC
Q 009203 487 ADPVIHLFDIRY 498 (540)
Q Consensus 487 ~dg~i~iwd~~~ 498 (540)
-|..|+||-...
T Consensus 456 id~DVKIWTP~~ 467 (559)
T KOG1334|consen 456 IDHDVKIWTPLT 467 (559)
T ss_pred CccceeeecCCc
Confidence 999999998854
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.1e-14 Score=130.34 Aligned_cols=250 Identities=15% Similarity=0.178 Sum_probs=177.2
Q ss_pred CCCCceeEEEecCCC--eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203 273 HRRWPEDIAWHPQGN--SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA 350 (540)
Q Consensus 273 h~~~V~~~~~~~~~~--~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 350 (540)
....|.+++|.-+++ .|... +.+..+..+.+....-...............+|..++.. ...|++|-.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r----~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~ 126 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNAR----SADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGN 126 (412)
T ss_pred hhhhhhhheeecCCceeEeecc----ccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCc
Confidence 345677888876655 44444 466667776665432111110000111124557777664 346888888999
Q ss_pred EEEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCC--CeEEEEECCCCCeeee----------eccCcc
Q 009203 351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGAD--KRIIGFDAGVGRADFK----------HQIESK 417 (540)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~d--g~i~iwd~~~~~~~~~----------~~~~~~ 417 (540)
+.+|....+......... ......+..+.-++.. ..+++|+.. ..+.+||+...+.++. ......
T Consensus 127 l~~~~~k~~d~hss~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred EEEEeccCCcccccccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeee
Confidence 999999865421111111 1122445555555544 455668887 7899999998866554 223456
Q ss_pred EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
..++.|-+..+. +.+++++.-+.|++||.+.+..++..+. -...+++++...|+|++|++|..-|.+..||++
T Consensus 205 ~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 205 ITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFD------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred eccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEec------cccCcceeeeecCCCcEEEEecccchhheeccc
Confidence 677888776443 6899999999999999998888777653 336789999999999999999999999999999
Q ss_pred CCCCccccc-ccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 498 YSANKPSQS-IRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 498 ~~~~~~~~~-~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
. ++.... +.+-.+.|.++..+|.+++|++||-|+.|||+|+
T Consensus 278 ~--~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 278 G--GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred C--ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 7 565555 8889999999999999999999999999999985
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.1e-14 Score=128.66 Aligned_cols=276 Identities=12% Similarity=0.123 Sum_probs=195.7
Q ss_pred cCceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 223 KRKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 223 ~~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
...|+.++|.-|+.. .|...+.|..+....+........+...... .+....|..++.. ...|++| -.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~--~l~~~~I~gl~~~--dg~Litc----~~sG~ 126 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV--SLGTKSIKGLKLA--DGTLITC----VSSGN 126 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc--ccccccccchhhc--CCEEEEE----ecCCc
Confidence 356888888765333 4444447777887777766554443110001 2445666666654 3367777 78999
Q ss_pred EEEEecCCCCC-ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--CcEEEEecCCCCCccccceeeccc----CC
Q 009203 302 ISVLNLNKTKG-RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD--HAVVLWSERDAEDSWKPKALHRNL----HS 374 (540)
Q Consensus 302 i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~----~~ 374 (540)
+.+|....+.. ...+..+.. ...+..+.-++....++++|+.. ..+.|||+.+.+.+|..+.+.... -.
T Consensus 127 l~~~~~k~~d~hss~l~~la~----g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIKLAT----GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred EEEEeccCCccccccceeeec----CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence 99999885531 112222222 24477888888677888889998 889999999988776655543321 23
Q ss_pred cceeEEEeccC--CCEEEEEeCCCeEEEEECCCCCe-eeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 375 SAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGVGRA-DFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 375 ~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
-.++++.|.+. ...|++++.-+.|++||.+.++. +..+.. +..+.++...|.+ .++++|..-|.+..||++.+
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g---n~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG---NFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC---cEEEEecccchhheecccCc
Confidence 45778999887 78999999999999999997654 444443 5667777888877 68999999999999999988
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~ 522 (540)
..... .+.+..+.|+++..+|.+.+|++++-|..|||+|+.+ .+++...- -...++++.+.++
T Consensus 280 kl~g~------~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt--rkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 280 KLLGC------GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT--RKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred eeecc------ccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc--chhhhhhh-hhccccEEEecCC
Confidence 76543 3567788999999999999999999999999999997 55554432 2334677777554
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=1.1e-13 Score=132.46 Aligned_cols=305 Identities=13% Similarity=0.090 Sum_probs=176.6
Q ss_pred ecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203 203 TSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP 277 (540)
Q Consensus 203 ~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V 277 (540)
....++.+.+.|.. ..+......-..+.|+|| |+++.+++.||.|.++|+.+.+.+.++.... ..
T Consensus 11 ~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---------~~ 80 (369)
T PF02239_consen 11 VERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKVGG---------NP 80 (369)
T ss_dssp EEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---------EE
T ss_pred EecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEecCC---------Cc
Confidence 34456666666654 123333233455789996 8888888999999999999999877775432 25
Q ss_pred eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC----CcccceeEEEEeCCCCCEEEEEec-CCcEE
Q 009203 278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP----HVKGIINSIIFLPWENPCFATGGS-DHAVV 352 (540)
Q Consensus 278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~ 352 (540)
.++++++||++++++. ...+.+.++|..+. +.+..+.... .....+.++..+| ....++..-. .+.|.
T Consensus 81 ~~i~~s~DG~~~~v~n---~~~~~v~v~D~~tl---e~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~ 153 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVAN---YEPGTVSVIDAETL---EPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIW 153 (369)
T ss_dssp EEEEE--TTTEEEEEE---EETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEE
T ss_pred ceEEEcCCCCEEEEEe---cCCCceeEeccccc---cceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEE
Confidence 6899999999998872 47899999999986 3344433211 1234678888888 6665555544 48888
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE-eCCCeEEEEECCCCCeeeeeccC-----ccEEEEeecCC
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQIE-----SKCMSVLPNPC 426 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~ 426 (540)
+.|...... ................|+|++++++.+ ..+..|-++|..+++.+...... .....+ .+|.
T Consensus 154 vVdy~d~~~----~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~ 228 (369)
T PF02239_consen 154 VVDYSDPKN----LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPG 228 (369)
T ss_dssp EEETTTSSC----EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETT
T ss_pred EEEeccccc----cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCC
Confidence 888877642 222222244567789999999987665 45678999999988775442221 112221 2222
Q ss_pred CCC-------ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE----eCCCcEEEEe
Q 009203 427 DFN-------LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG----SADPVIHLFD 495 (540)
Q Consensus 427 ~~~-------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg----~~dg~i~iwd 495 (540)
... +...++.-....+.+||....+.... +.....+ ..+..+|+++++.+. ...+.|.++|
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~-------I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT-------IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE-------EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEE-------EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 100 01111111122444566666654332 2222334 778889999999988 4558999999
Q ss_pred ccCCCCcccccccccc-cceeEEEEcCCCCEEEEEEcC--CcEEEEe
Q 009203 496 IRYSANKPSQSIRAHQ-KRVFKAVWHYSHPLLISISSD--LNIGLHK 539 (540)
Q Consensus 496 ~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~~l~s~~~d--g~v~iw~ 539 (540)
..+ .+.+.++.... ..+..+.|++||+.+..+..+ +.|.|||
T Consensus 301 ~~t--l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 301 KKT--LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp CCG--TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred CcC--cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 998 56566654322 358999999999965444433 3699987
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.7e-14 Score=132.30 Aligned_cols=279 Identities=10% Similarity=0.054 Sum_probs=192.7
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
-+|...-+.|..+||+..++|||.+-..|++||+..... .+..+.+ ...|.-.-.+.|-..++.- ..|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlD------ae~V~feiLsDD~SK~v~L----~~D 115 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLD------AEVVDFEILSDDYSKSVFL----QND 115 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeeccc------ccceeEEEeccchhhheEe----ecC
Confidence 367788899999998666788999999999999986442 2221111 1223333334444445554 567
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
.+|-+...-.- ...+ .. ...-..++++..+..+++.|+ ...|+-++++.|.. +..+. ...+.+++
T Consensus 116 R~IefHak~G~----hy~~-RI----P~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrf---L~P~~--~~~~~lN~ 180 (703)
T KOG2321|consen 116 RTIEFHAKYGR----HYRT-RI----PKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRF---LNPFE--TDSGELNV 180 (703)
T ss_pred ceeeehhhcCe----eeee-ec----CcCCccccccCCCccEEEeec-CcceEEEEcccccc---ccccc--ccccccee
Confidence 77766544311 1111 10 122346667654556555554 46788889999875 23332 25588999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC------------ccEEEEeecCCCCCceEEEEEcCCCeEEEEEC
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE------------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDI 447 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~ 447 (540)
+..++...+|++|+.+|.|-.||.+....+...... ..+.++.|+.++ ..+++|..+|.|.|||+
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g---L~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG---LHVAVGTSTGSVLIYDL 257 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc---eeEEeeccCCcEEEEEc
Confidence 999999999999999999999999986654433222 237888888776 78999999999999999
Q ss_pred CCCcceeeeeccccccCccccCeEEEEEcCC--CCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCE
Q 009203 448 RLRQTEIHAFGWKQESSESQSALINQSWSPD--GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPL 525 (540)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~ 525 (540)
++.+..+.. -.+..-+|..+.|.+. ++.|++. ....++|||-.+ +++...+... ..++.+++-|++.+
T Consensus 258 Ra~~pl~~k------dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~--Gk~~asiEpt-~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 258 RASKPLLVK------DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT--GKPMASIEPT-SDLNDFCFVPGSGM 327 (703)
T ss_pred ccCCceeec------ccCCccceeeecccccCCCceEEec-chHHhhhccccc--CCceeecccc-CCcCceeeecCCce
Confidence 988764431 1233457889999775 4456555 457899999998 6777776643 35999999999999
Q ss_pred EEEEEcCCcEEEE
Q 009203 526 LISISSDLNIGLH 538 (540)
Q Consensus 526 l~s~~~dg~v~iw 538 (540)
++++-.++.+..|
T Consensus 328 ~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 328 FFTANESSKMHTY 340 (703)
T ss_pred EEEecCCCcceeE
Confidence 9999888766544
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.4e-14 Score=125.24 Aligned_cols=233 Identities=15% Similarity=0.222 Sum_probs=162.1
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.+..++|++.-..++++ ..|-.|++||-... +...+... ....|+|++|-|..+..|+.|.. +.|.||.
T Consensus 100 dlr~~aWhqH~~~fava----~nddvVriy~ksst----~pt~Lks~--sQrnvtclawRPlsaselavgCr-~gIciW~ 168 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVA----TNDDVVRIYDKSST----CPTKLKSV--SQRNVTCLAWRPLSASELAVGCR-AGICIWS 168 (445)
T ss_pred ceeeEeechhhhhhhhh----ccCcEEEEeccCCC----CCceecch--hhcceeEEEeccCCcceeeeeec-ceeEEEE
Confidence 36779999976678888 89999999998752 23333321 23569999999988888888887 5599998
Q ss_pred cCCCCCccc---------cceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCeeeee-ccCccEEEEeec
Q 009203 356 ERDAEDSWK---------PKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFKH-QIESKCMSVLPN 424 (540)
Q Consensus 356 ~~~~~~~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 424 (540)
......... .+.+...+| .+|+++.|.+||..+++++. |..|.|||..++..+... ...+.+.-+.|+
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS 247 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS 247 (445)
T ss_pred cCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence 754322111 233444455 78999999999999999876 667999999998876554 444566678999
Q ss_pred CCCCCceEEEEEcCCCeEEEEECC-CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc
Q 009203 425 PCDFNLFMVQTGTPGRQLRLYDIR-LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP 503 (540)
Q Consensus 425 ~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~ 503 (540)
|++ .+++++.-|+..++|+.. +........ ..+.|...+|+|+|++|..... |.-++|.+.......
T Consensus 248 Pdg---d~lfaAt~davfrlw~e~q~wt~erw~l--------gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~ 315 (445)
T KOG2139|consen 248 PDG---DVLFAATCDAVFRLWQENQSWTKERWIL--------GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDS 315 (445)
T ss_pred CCC---CEEEEecccceeeeehhcccceecceec--------cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCc
Confidence 998 689999999999999544 333333222 2348999999999998765532 334455544211110
Q ss_pred -------------cccc------cc---cccceeEEEEcCCCCEEEEEEcC
Q 009203 504 -------------SQSI------RA---HQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 504 -------------~~~~------~~---h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
+..+ .+ -.+.+.+++|.|.|.+||+.-..
T Consensus 316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 1111 11 24578999999999999987543
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=7.8e-15 Score=136.26 Aligned_cols=207 Identities=21% Similarity=0.238 Sum_probs=152.4
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
...|+.++.||.+.|-+-. ++....+ ..|.+.|.+-.|+|||.-|+++ +.||.|++|.-... .
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~rVE~sv--------~AH~~A~~~gRW~~dGtgLlt~----GEDG~iKiWSrsGM----L 137 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-ARVERSI--------SAHAAAISSGRWSPDGAGLLTA----GEDGVIKIWSRSGM----L 137 (737)
T ss_pred cceEEEEcCCceEEEeccc-chhhhhh--------hhhhhhhhhcccCCCCceeeee----cCCceEEEEeccch----H
Confidence 3468888899999988754 3322333 5799999999999999999999 99999999986633 1
Q ss_pred EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203 316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD 395 (540)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 395 (540)
..++.. ...+|.|++|.|+..+.+++.+ +.+.|=.+... ...+....|.+-|.++.|++..+++++|+.|
T Consensus 138 RStl~Q---~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n-----~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 138 RSTVVQ---NEESIRCARWAPNSNSIVFCQG--GHISIKPLAAN-----SKIIRWRAHDGLVLSLSWSTQSNIIASGGED 207 (737)
T ss_pred HHHHhh---cCceeEEEEECCCCCceEEecC--CeEEEeecccc-----cceeEEeccCcEEEEeecCccccceeecCCc
Confidence 111111 2457999999994444444443 45656555443 2456667899999999999999999999999
Q ss_pred CeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEE
Q 009203 396 KRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS 474 (540)
Q Consensus 396 g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 474 (540)
-..++||.. |..++. ..++..+.+++|+|+. .++.++. +++++= +...+.|..++
T Consensus 208 ~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~----~~~v~S~-nt~R~~------------------~p~~GSifnls 263 (737)
T KOG1524|consen 208 FRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK----DYLLWSY-NTARFS------------------SPRVGSIFNLS 263 (737)
T ss_pred eeEEeeccc-CcccccCChhccceeeeeecccc----ceeeeee-eeeeec------------------CCCccceEEEE
Confidence 999999987 555544 5567889999999984 4555443 233311 22356899999
Q ss_pred EcCCCCEEEEEeCCCcEEE
Q 009203 475 WSPDGLYITSGSADPVIHL 493 (540)
Q Consensus 475 ~sp~g~~l~sg~~dg~i~i 493 (540)
||+||..+++|...|.+.+
T Consensus 264 WS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 264 WSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EcCCCceeeccccCceEEE
Confidence 9999999999999997754
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.2e-13 Score=134.37 Aligned_cols=237 Identities=10% Similarity=0.100 Sum_probs=152.5
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV 325 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 325 (540)
..|.+||.... ....+ ..|...+.+.+|+|||+.|+..... ..+..|.+||+.++.. . .+.. +
T Consensus 182 ~~l~~~d~dg~-~~~~l--------t~~~~~v~~p~wSpDG~~lay~s~~-~g~~~i~~~dl~~g~~---~-~l~~---~ 244 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYL--------TDGSSLVLTPRFSPNRQEITYMSYA-NGRPRVYLLDLETGQR---E-LVGN---F 244 (435)
T ss_pred eEEEEECCCCC-CcEEE--------ecCCCCeEeeEECCCCCEEEEEEec-CCCCEEEEEECCCCcE---E-Eeec---C
Confidence 46888887543 23333 3566789999999999988886321 2457899999987632 1 2221 2
Q ss_pred ccceeEEEEeCCCCCEEE-EEecCCc--EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CC--eEE
Q 009203 326 KGIINSIIFLPWENPCFA-TGGSDHA--VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DK--RII 399 (540)
Q Consensus 326 ~~~v~~~~~~p~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg--~i~ 399 (540)
.+.+.+.+|+| +|+.|+ +.+.++. |++||+.++.. ..+. .+........|+|||+.|+..+. +| .|+
T Consensus 245 ~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~----~~Lt--~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy 317 (435)
T PRK05137 245 PGMTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTT----TRLT--DSPAIDTSPSYSPDGSQIVFESDRSGSPQLY 317 (435)
T ss_pred CCcccCcEECC-CCCEEEEEEecCCCceEEEEECCCCce----EEcc--CCCCccCceeEcCCCCEEEEEECCCCCCeEE
Confidence 34577889999 887765 5555554 77789887763 3332 24455678899999999887764 33 688
Q ss_pred EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 400 GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 400 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
+||+..+................|+|++ ..|+..+.+ ..|.+||+.++.... + . ....+....|+
T Consensus 318 ~~d~~g~~~~~lt~~~~~~~~~~~SpdG---~~ia~~~~~~~~~~i~~~d~~~~~~~~--l------t-~~~~~~~p~~s 385 (435)
T PRK05137 318 VMNADGSNPRRISFGGGRYSTPVWSPRG---DLIAFTKQGGGQFSIGVMKPDGSGERI--L------T-SGFLVEGPTWA 385 (435)
T ss_pred EEECCCCCeEEeecCCCcccCeEECCCC---CEEEEEEcCCCceEEEEEECCCCceEe--c------c-CCCCCCCCeEC
Confidence 8898876554433334445567899988 455554332 368888986544221 1 1 11235678999
Q ss_pred CCCCEEEEEeCC------CcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203 477 PDGLYITSGSAD------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 477 p~g~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~ 522 (540)
|||++|+..+.+ ..++++|+.. .....+. ..+.+...+|+|-
T Consensus 386 pDG~~i~~~~~~~~~~~~~~L~~~dl~g---~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 386 PNGRVIMFFRQTPGSGGAPKLYTVDLTG---RNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCEEEEEEccCCCCCcceEEEEECCC---CceEEcc-CCCCccCcccCCC
Confidence 999998765442 2577778764 2223333 2344677788763
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1e-13 Score=137.64 Aligned_cols=237 Identities=14% Similarity=0.135 Sum_probs=153.1
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV 325 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 325 (540)
..|.+||.... ....+ ..+...+.+.+|+|||+.|+..... .....|.+||+.++.. .. +.. .
T Consensus 184 ~~l~i~D~~g~-~~~~l--------t~~~~~v~~p~wSpDg~~la~~s~~-~~~~~l~~~dl~~g~~---~~-l~~---~ 246 (433)
T PRK04922 184 YALQVADSDGY-NPQTI--------LRSAEPILSPAWSPDGKKLAYVSFE-RGRSAIYVQDLATGQR---EL-VAS---F 246 (433)
T ss_pred EEEEEECCCCC-CceEe--------ecCCCccccccCCCCCCEEEEEecC-CCCcEEEEEECCCCCE---EE-ecc---C
Confidence 46889998643 33333 2455678899999999999887221 2345799999987632 21 221 1
Q ss_pred ccceeEEEEeCCCCCEEE-EEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CC--eEE
Q 009203 326 KGIINSIIFLPWENPCFA-TGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DK--RII 399 (540)
Q Consensus 326 ~~~v~~~~~~p~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg--~i~ 399 (540)
.+...+++|+| +++.|+ +.+.+| .|++||+.+++. ..+. .+.......+|+|||+.|+.++. +| .|+
T Consensus 247 ~g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~----~~lt--~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 247 RGINGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQL----TRLT--NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred CCCccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCe----EECc--cCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 23455789999 887665 455555 599999988763 2332 24445567899999998887764 44 477
Q ss_pred EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 400 GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 400 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
++|+.+++...............|+|++ .+++..+.+ ..|.+||+.++.... + . +........|+
T Consensus 320 ~~dl~~g~~~~lt~~g~~~~~~~~SpDG---~~Ia~~~~~~~~~~I~v~d~~~g~~~~--L------t-~~~~~~~p~~s 387 (433)
T PRK04922 320 RVAASGGSAERLTFQGNYNARASVSPDG---KKIAMVHGSGGQYRIAVMDLSTGSVRT--L------T-PGSLDESPSFA 387 (433)
T ss_pred EEECCCCCeEEeecCCCCccCEEECCCC---CEEEEEECCCCceeEEEEECCCCCeEE--C------C-CCCCCCCceEC
Confidence 7788776653332223334467899988 455544333 269999998765322 1 1 11133457899
Q ss_pred CCCCEEEEEeCC---CcEEEEeccCCCCcccccccccccceeEEEEcC
Q 009203 477 PDGLYITSGSAD---PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY 521 (540)
Q Consensus 477 p~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~ 521 (540)
|||++|+..+.+ +.|+++++. +.....+..+.+.+...+|+|
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~---g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTD---GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECC---CCceEEcccCCCCCCCCccCC
Confidence 999988876653 357777776 444555555666778888887
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=4.7e-12 Score=110.83 Aligned_cols=278 Identities=13% Similarity=0.140 Sum_probs=173.8
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC------
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG------ 298 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~------ 298 (540)
....++|+-| ...++.|..+| .+||+.+--+........ . .| -.+.-+-|- .++|+.. |+.
T Consensus 7 ~~lsvs~NQD-~ScFava~~~G-friyn~~P~ke~~~r~~~--~--~G--~~~veMLfR--~N~laLV---GGg~~pky~ 73 (346)
T KOG2111|consen 7 KTLSVSFNQD-HSCFAVATDTG-FRIYNCDPFKESASRQFI--D--GG--FKIVEMLFR--SNYLALV---GGGSRPKYP 73 (346)
T ss_pred ceeEEEEccC-CceEEEEecCc-eEEEecCchhhhhhhccc--c--Cc--hhhhhHhhh--hceEEEe---cCCCCCCCC
Confidence 4556999986 66777777665 999998763321111100 0 01 122233332 3455443 122
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC-CCccccceeecccCCcce
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA-EDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v 377 (540)
-..|.|||=.. ..++..+.. ..+|.++.+.+ +.|++.- .+.|+||...+. +. ...+........+
T Consensus 74 pNkviIWDD~k---~~~i~el~f----~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGl 139 (346)
T KOG2111|consen 74 PNKVIIWDDLK---ERCIIELSF----NSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGL 139 (346)
T ss_pred CceEEEEeccc---CcEEEEEEe----ccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCce
Confidence 35799999332 355666553 56799999976 5666655 478999998843 32 1222222223334
Q ss_pred eEEEeccCCCEEEE-EeCCCeEEEEECCCCCe---eeeeccCccEEEEeecCCCCCceEEEEEcCCCe-EEEEECCCCcc
Q 009203 378 MGVAGMQQKQIVLS-AGADKRIIGFDAGVGRA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ-LRLYDIRLRQT 452 (540)
Q Consensus 378 ~~l~~s~~~~~l~~-~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~ 452 (540)
.+++-+.+..+|+. |-.-|.|.|-|+...+. .....+...+.+++.+-++ .++|+++..|+ |+|||..++..
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G---t~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG---TLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc---cEEEEeccCcEEEEEEEcCCCcE
Confidence 44444434445554 44578999999987655 5556677888888888877 79999999998 89999999886
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC-cc-------cc-c-------------cccc
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN-KP-------SQ-S-------------IRAH 510 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~-~~-------~~-~-------------~~~h 510 (540)
..... -......|.+++|||++.+||+++..|+|+||.+..... +. .. . +.-.
T Consensus 217 l~E~R-----RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~ 291 (346)
T KOG2111|consen 217 LQELR-----RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLP 291 (346)
T ss_pred eeeee-----cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEcc
Confidence 54321 112235799999999999999999999999999875211 11 00 0 1111
Q ss_pred ccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 511 QKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
.+...-++|-.+.+.++..+.||+.+-
T Consensus 292 ~~~~~~~~fg~~~nsvi~i~~Dgsy~k 318 (346)
T KOG2111|consen 292 QGTQCIIAFGSETNTVIAICADGSYYK 318 (346)
T ss_pred CCCcEEEEecCCCCeEEEEEeCCcEEE
Confidence 234455667666566667777776543
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.7e-13 Score=134.12 Aligned_cols=238 Identities=14% Similarity=0.097 Sum_probs=146.7
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV 325 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 325 (540)
..|.+||.. +.....+ ..+...+.+.+|+|||+.|+..... .....|.+||+.++.. ... .. .
T Consensus 176 ~~L~~~D~d-G~~~~~l--------~~~~~~v~~p~wSPDG~~la~~s~~-~~~~~I~~~dl~~g~~---~~l-~~---~ 238 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA--------LSSPEPIISPAWSPDGTKLAYVSFE-SKKPVVYVHDLATGRR---RVV-AN---F 238 (427)
T ss_pred cEEEEECCC-CCCceEe--------ccCCCCcccceEcCCCCEEEEEEcc-CCCcEEEEEECCCCCE---EEe-ec---C
Confidence 356666663 3322333 2455678899999999998876211 2345699999987632 222 11 1
Q ss_pred ccceeEEEEeCCCCCEEE-EEecCCcEEEEe--cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEE
Q 009203 326 KGIINSIIFLPWENPCFA-TGGSDHAVVLWS--ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGF 401 (540)
Q Consensus 326 ~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iw 401 (540)
.+.+.+.+|+| +++.|+ +.+.+|...||. +.++. ...+. .+........|+|||+.|+..+. +|...+|
T Consensus 239 ~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt--~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy 311 (427)
T PRK02889 239 KGSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSG----LRRLT--QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIY 311 (427)
T ss_pred CCCccceEECC-CCCEEEEEEccCCCceEEEEECCCCC----cEECC--CCCCCCcCeEEcCCCCEEEEEecCCCCcEEE
Confidence 23466899999 888776 566777766665 44443 22232 24445667899999998887664 4555555
Q ss_pred --ECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC---eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 402 --DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR---QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 402 --d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
++.++................|+|++ .+++..+.++ .|.+||+.++..... .. ........|+
T Consensus 312 ~~~~~~g~~~~lt~~g~~~~~~~~SpDG---~~Ia~~s~~~g~~~I~v~d~~~g~~~~l--------t~-~~~~~~p~~s 379 (427)
T PRK02889 312 RMPASGGAAQRVTFTGSYNTSPRISPDG---KLLAYISRVGGAFKLYVQDLATGQVTAL--------TD-TTRDESPSFA 379 (427)
T ss_pred EEECCCCceEEEecCCCCcCceEECCCC---CEEEEEEccCCcEEEEEEECCCCCeEEc--------cC-CCCccCceEC
Confidence 55555432222222334457789987 5666555443 699999987653221 11 1223567999
Q ss_pred CCCCEEEEEeCCC-c--EEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203 477 PDGLYITSGSADP-V--IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 477 p~g~~l~sg~~dg-~--i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~ 522 (540)
|||++|+.++.++ . +++.++. +.....+..+.+.+...+|+|-
T Consensus 380 pdg~~l~~~~~~~g~~~l~~~~~~---g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLAAVSSD---GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCCEEEEEEecCCCEEEEEEECC---CCceEEeecCCCCCCCCccCCC
Confidence 9999988776543 3 4455553 4555556666677888899874
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=8.2e-15 Score=133.89 Aligned_cols=264 Identities=9% Similarity=0.015 Sum_probs=196.3
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV 304 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v 304 (540)
+-..+.|+. +|++|+.|+.-|.|..+|..++.....+.. ...|.++.|..+..+||++ ....+.|
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---------~Etv~Dv~~LHneq~~AVA-----QK~y~yv 195 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINV---------METVRDVTFLHNEQFFAVA-----QKKYVYV 195 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeecccceeeeeeeh---------hhhhhhhhhhcchHHHHhh-----hhceEEE
Confidence 456788887 599999999999999999999876655532 2458899999988899986 8889999
Q ss_pred EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203 305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 384 (540)
||-. |. .+..+.. ...|..+.|.| .--+|++++..|.++.-|+.+|+.+..+. ...+.+..++-+|
T Consensus 196 YD~~-Gt---ElHClk~----~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~-----t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 196 YDNN-GT---ELHCLKR----HIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR-----TGAGRTDVMKQNP 261 (545)
T ss_pred ecCC-Cc---EEeehhh----cCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH-----ccCCccchhhcCC
Confidence 9977 42 2444433 24599999999 88889999999999999999998743333 2557788888899
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc
Q 009203 385 QKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES 463 (540)
Q Consensus 385 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 463 (540)
-+..+-+|...|+|.+|.....+++.. ..+.+.+.++++++.+ .|+++.+.|..++|||+++........
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G---~YMaTtG~Dr~~kIWDlR~~~ql~t~~------ 332 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG---RYMATTGLDRKVKIWDLRNFYQLHTYR------ 332 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC---cEEeecccccceeEeeeccccccceee------
Confidence 889999999999999999998887654 5567888999999988 899999999999999999876433221
Q ss_pred CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC-CCccccccccc--ccceeEEEEcCCCCEEEEEE
Q 009203 464 SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS-ANKPSQSIRAH--QKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 464 ~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~h--~~~i~~l~~s~~~~~l~s~~ 530 (540)
. ..+...++||..| +||.+ ....|.||.=... .+.....+-.| .++|..+.|.|-...|-.|-
T Consensus 333 t--p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 333 T--PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred c--CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 1 2356778888554 45544 4455889954321 11111111122 34899999998655554443
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=8e-13 Score=130.63 Aligned_cols=232 Identities=13% Similarity=0.130 Sum_probs=147.6
Q ss_pred eEEEeccc----hhcccccCceEEEEEecCCCcEEEEEe---CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEE
Q 009203 209 TIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSA---LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281 (540)
Q Consensus 209 ~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 281 (540)
.+.+++.. +.+..+...+.+.+|+|| |+.|+..+ .+..+.+|++.+++.. .+ . .....+..++
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~-~l-~-------~~~~~~~~~~ 249 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVR-QV-A-------SFPRHNGAPA 249 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeE-Ec-c-------CCCCCcCCeE
Confidence 56666543 335566778999999997 77777543 2457999999876521 11 1 1122345689
Q ss_pred EecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-Cc--EEEEecCC
Q 009203 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-HA--VVLWSERD 358 (540)
Q Consensus 282 ~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~--i~iwd~~~ 358 (540)
|+|||+.|+..... ..+..|.+||+.++. ....... ...+....|+| +++.|+..+.+ +. |+++|+.+
T Consensus 250 ~SPDG~~La~~~~~-~g~~~I~~~d~~tg~---~~~lt~~----~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 250 FSPDGSKLAFALSK-TGSLNLYVMDLASGQ---IRQVTDG----RSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred ECCCCCEEEEEEcC-CCCcEEEEEECCCCC---EEEccCC----CCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC
Confidence 99999988764211 123358999998752 2222222 23577899999 99988776654 44 55556766
Q ss_pred CCCccccceeecccCCcceeEEEeccCCCEEEEEeCC---CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEE
Q 009203 359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD---KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQT 435 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 435 (540)
+.. ..+.. .........|+|||++|+..+.+ ..|.+||+.++...... .........|+|++ .+|+.
T Consensus 321 g~~----~~lt~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~~~~~~~p~~SpDG---~~i~~ 390 (429)
T PRK03629 321 GAP----QRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-DTFLDETPSIAPNG---TMVIY 390 (429)
T ss_pred CCe----EEeec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-CCCCCCCceECCCC---CEEEE
Confidence 542 33322 33445678999999999876653 35889999887654322 22223456788887 56777
Q ss_pred EcCCCe---EEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 436 GTPGRQ---LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 436 ~~~dg~---v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
.+.++. +.++++..... . .+.+|.+.+...+|+|
T Consensus 391 ~s~~~~~~~l~~~~~~G~~~-~-------~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGRFK-A-------RLPATDGQVKFPAWSP 427 (429)
T ss_pred EEcCCCceEEEEEECCCCCe-E-------ECccCCCCcCCcccCC
Confidence 666653 67777754332 1 2345677788888987
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=2.2e-11 Score=117.09 Aligned_cols=291 Identities=12% Similarity=0.125 Sum_probs=177.7
Q ss_pred EEEEeCC----ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC-Cc
Q 009203 239 FVTSALD----GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK-GR 313 (540)
Q Consensus 239 l~tg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~-~~ 313 (540)
++.|+.. +.|.+|+++............. -......++++|++++|+++...+..++.|..|++.... ..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-----~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-----EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-----ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-----CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee
Confidence 4455555 6788887743332222222211 112345699999999999883211157899999988641 22
Q ss_pred eeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCcccc-ceeec--------ccCCcceeEEEec
Q 009203 314 ACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKP-KALHR--------NLHSSAVMGVAGM 383 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~-~~~~~--------~~~~~~v~~l~~s 383 (540)
..+..... .......++++| ++.+|+++. .+|.|.++++.....+... ..... ........++.|+
T Consensus 77 ~~~~~~~~---~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 77 TLLNSVPS---GGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp EEEEEEEE---SSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred EEeeeecc---CCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 22333221 134467899999 888887776 5899999999874221111 11110 0123457889999
Q ss_pred cCCCEEEEEeC-CCeEEEEECCCCC--eee----eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 384 QQKQIVLSAGA-DKRIIGFDAGVGR--ADF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 384 ~~~~~l~~~~~-dg~i~iwd~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
|+|+++++... ...|.+|++.... ... ....+.....+.|+|++. .+.++...++.|.+|++.........
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~--~~Yv~~e~s~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK--YAYVVNELSNTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS--EEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC--EEEEecCCCCcEEEEeecccCCceeE
Confidence 99998887654 4479999997655 211 345567788999999873 35566777899999999832212211
Q ss_pred ecccccc---CccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCc--ccccccccccceeEEEEcCCCCEEEEEE
Q 009203 457 FGWKQES---SESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANK--PSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 457 ~~~~~~~---~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
......+ .........++++|||++|+++. ..+.|.+|+++...+. .+..+.........++++|+|++|++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence 1111111 11123688899999999987765 5678999999542222 3333333344579999999999888776
Q ss_pred -cCCcEEEEeC
Q 009203 531 -SDLNIGLHKI 540 (540)
Q Consensus 531 -~dg~v~iw~l 540 (540)
.++.|.+|++
T Consensus 311 ~~s~~v~vf~~ 321 (345)
T PF10282_consen 311 QDSNTVSVFDI 321 (345)
T ss_dssp TTTTEEEEEEE
T ss_pred cCCCeEEEEEE
Confidence 5578988864
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=3.1e-13 Score=125.89 Aligned_cols=177 Identities=12% Similarity=0.139 Sum_probs=128.3
Q ss_pred cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecC-CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-
Q 009203 284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED- 361 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~- 361 (540)
+.+--|+.+ -..|.|++.|..... ..+.+.. ..-.+..|+|+.|-|.+...++.+-.+|.+++||..-...
T Consensus 183 ~~g~dllIG----f~tGqvq~idp~~~~---~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~ 255 (636)
T KOG2394|consen 183 PKGLDLLIG----FTTGQVQLIDPINFE---VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA 255 (636)
T ss_pred CCCcceEEe----eccCceEEecchhhH---HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC
Confidence 456567777 788889988876421 1111111 1112467999999998888888899999999997632110
Q ss_pred ---ccc-------c------------ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccE
Q 009203 362 ---SWK-------P------------KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKC 418 (540)
Q Consensus 362 ---~~~-------~------------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~ 418 (540)
.+. + .........+.|+.++|+|||++|++.+.||.++|||..+.+.+-. ...-+..
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL 335 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL 335 (636)
T ss_pred CCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce
Confidence 000 0 0011111345789999999999999999999999999997665443 2334678
Q ss_pred EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
++++|+|++ ++|++|+.|.-|.||.+...+... .-.+|.++|..|+|+|
T Consensus 336 LCvcWSPDG---KyIvtGGEDDLVtVwSf~erRVVA-------RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 LCVCWSPDG---KYIVTGGEDDLVTVWSFEERRVVA-------RGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEEcCCc---cEEEecCCcceEEEEEeccceEEE-------eccccccceeeEeecc
Confidence 999999999 899999999999999998776544 3468999999999983
No 229
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=8e-13 Score=134.60 Aligned_cols=251 Identities=16% Similarity=0.156 Sum_probs=165.9
Q ss_pred CCCCCCceeEEEecCC-CeEEEEeecCCCCCeEEEEecCCCCCc----eeEEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203 271 PKHRRWPEDIAWHPQG-NSLFSAHTADSGDSQISVLNLNKTKGR----ACVTFLDDKPHVKGIINSIIFLPWENPCFATG 345 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 345 (540)
..|...|..++.++.. .++++| +.||+|++||...-... ....+... ..+.+.++...+ .++.+|.+
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~Fvsg----S~DGtVKvW~~~k~~~~~~s~rS~ltys~---~~sr~~~vt~~~-~~~~~Av~ 1116 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSG----SDDGTVKVWNLRKLEGEGGSARSELTYSP---EGSRVEKVTMCG-NGDQFAVS 1116 (1431)
T ss_pred hhccccccceeecCCCCceEEEe----cCCceEEEeeehhhhcCcceeeeeEEEec---cCCceEEEEecc-CCCeEEEE
Confidence 4677888888887755 899999 99999999998753221 11112211 246789999999 99999999
Q ss_pred ecCCcEEEEecCCCCCccc--cc-eeecccCCcce-eEEEecc-CCC-EEEEEeCCCeEEEEECCCCCeeeeec---cCc
Q 009203 346 GSDHAVVLWSERDAEDSWK--PK-ALHRNLHSSAV-MGVAGMQ-QKQ-IVLSAGADKRIIGFDAGVGRADFKHQ---IES 416 (540)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~--~~-~~~~~~~~~~v-~~l~~s~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~ 416 (540)
+.||.|++.+++....... .. ........+.+ ..-+|.. .+. .++.+...+.|..||++........+ ..+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999976221000 00 01111122333 3334432 233 78888889999999999876654433 357
Q ss_pred cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC---CEEEEEe--CCCcE
Q 009203 417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG---LYITSGS--ADPVI 491 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~sg~--~dg~i 491 (540)
.+.+++.+|.+ .+++.|+..|.+.+||++-+.. ...+. .++..++..+..+|-. .+.++++ ..+.|
T Consensus 1197 ~vTSi~idp~~---~WlviGts~G~l~lWDLRF~~~-i~sw~-----~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1197 LVTSIVIDPWC---NWLVIGTSRGQLVLWDLRFRVP-ILSWE-----HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred ceeEEEecCCc---eEEEEecCCceEEEEEeecCce-eeccc-----CcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 78899999987 7999999999999999985543 22221 2345678888777633 4555444 57889
Q ss_pred EEEeccCCCCccccccccc-------------------ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 492 HLFDIRYSANKPSQSIRAH-------------------QKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 492 ~iwd~~~~~~~~~~~~~~h-------------------~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+|++.++. ...++... .-......+..-+.++.+|+.|+.|+.||.
T Consensus 1268 s~wn~~~g~--~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1268 STWNMETGL--RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred eeeecccCc--ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 999999742 22222111 111122333344568999999999999985
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.5e-12 Score=113.87 Aligned_cols=233 Identities=14% Similarity=0.204 Sum_probs=154.3
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEE-EEecC------C
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSD------H 349 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d------g 349 (540)
..+++|+.|...++++ .|.-.+||+.+.-+.........+ .-.+.-+-| ..++|+ .|+.+ .
T Consensus 8 ~lsvs~NQD~ScFava-----~~~Gfriyn~~P~ke~~~r~~~~~----G~~~veMLf---R~N~laLVGGg~~pky~pN 75 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVA-----TDTGFRIYNCDPFKESASRQFIDG----GFKIVEMLF---RSNYLALVGGGSRPKYPPN 75 (346)
T ss_pred eeEEEEccCCceEEEE-----ecCceEEEecCchhhhhhhccccC----chhhhhHhh---hhceEEEecCCCCCCCCCc
Confidence 4569999999999987 455589999885321111111111 011222333 223443 34332 4
Q ss_pred cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC-CCCeeeeecc---CccEEEEeecC
Q 009203 350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG-VGRADFKHQI---ESKCMSVLPNP 425 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~---~~~~~~~~~~~ 425 (540)
.|.|||=....+ +.......+|.++.+.+ ..|++.- .+.|++|... +.+.+..... +....++....
T Consensus 76 kviIWDD~k~~~------i~el~f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 76 KVIIWDDLKERC------IIELSFNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred eEEEEecccCcE------EEEEEeccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 699999444433 22223668899999986 4455443 4689999987 3444443322 23334444333
Q ss_pred CCCCceEEEE-EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCc-EEEEeccCCCCcc
Q 009203 426 CDFNLFMVQT-GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPV-IHLFDIRYSANKP 503 (540)
Q Consensus 426 ~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~-i~iwd~~~~~~~~ 503 (540)
.. .+|+. |..-|.|+|-|+...... .......|.+.|.|++.+-+|..+||++..|+ |||||..+ +.+
T Consensus 147 ~k---~~LafPg~k~GqvQi~dL~~~~~~-----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~--g~~ 216 (346)
T KOG2111|consen 147 NK---SLLAFPGFKTGQVQIVDLASTKPN-----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED--GTL 216 (346)
T ss_pred Cc---eEEEcCCCccceEEEEEhhhcCcC-----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC--CcE
Confidence 32 34443 556799999999865531 11245789999999999999999999999997 78999998 777
Q ss_pred cccccc--cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 504 SQSIRA--HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 504 ~~~~~~--h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+..++. ....|.+|+|||++.+|+.+|+-|+|+|+.|
T Consensus 217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 777763 2347999999999999999999999999864
No 231
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.56 E-value=5.8e-13 Score=117.53 Aligned_cols=248 Identities=11% Similarity=0.127 Sum_probs=172.4
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.++||.+.|++...-| ...-+++.+.|.++|||--.+ ++.-..+.. ....+++++.+.++...|+.+
T Consensus 19 ~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-------~mP~~~~~~~y~~e~~~L~vg---- 86 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-------YMPSPCSAMEYVSESRRLYVG---- 86 (404)
T ss_pred hhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhh-------hCCCCceEeeeeccceEEEEE----
Confidence 4679999999988888 577899999999999996443 332222211 234668999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
-.+|++.-+.+... ............|.+.+..+-|+- ...++++.+.|..+.---.+.+..+.... ....
T Consensus 87 ~~ngtvtefs~sed--fnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~------~~~~ 157 (404)
T KOG1409|consen 87 QDNGTVTEFALSED--FNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYN------FETP 157 (404)
T ss_pred EecceEEEEEhhhh--hhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceE------eecc
Confidence 89999998877643 122333333445788999999998 88899999998877544444443211000 1111
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCC--Ceee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVG--RADF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
.+++.|.- .+.+.|...|.|.+-.+... ..+. ...+...+.+..|.+.+ ..+.+|..|..+.+||+....-.
T Consensus 158 ~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~---~~LfSg~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 158 ASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ---RLLFSGASDHSVIMWDIGGRKGT 232 (404)
T ss_pred CCCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC---cEEEeccccCceEEEeccCCcce
Confidence 22222221 14555666666555444332 2233 34455677889999877 79999999999999999865543
Q ss_pred eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
.. ++.+|...|..+..-+.-+.+++++.||.|.+|+++
T Consensus 233 ~~------el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 233 AY------ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ee------eeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 33 557888899999888888899999999999999997
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.55 E-value=1.6e-12 Score=112.39 Aligned_cols=271 Identities=15% Similarity=0.167 Sum_probs=178.7
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec---CCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeec
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP---QGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLD 320 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~---~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 320 (540)
-|.+.+|++...+... + .... ..-...+..+.|.- +|. .++-+ ...|.|.++..........+.-+.
T Consensus 45 ~Gkl~Lys~~d~~~~~-l-~~~q---~~dts~~~dm~w~~~~~~g~~~l~~a----~a~G~i~~~r~~~~~ss~~L~~ls 115 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-L-DTLQ---CTDTSTEFDMLWRIRETDGDFNLLDA----HARGQIQLYRNDEDESSVHLRGLS 115 (339)
T ss_pred ccceEEEeecccccCc-c-ceee---eecccccceeeeeeccCCccceeeec----cccceEEEEeeccceeeeeecccc
Confidence 3677888887765443 1 1111 12234466777753 444 45555 788999999876542222222222
Q ss_pred CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEE
Q 009203 321 DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRII 399 (540)
Q Consensus 321 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~ 399 (540)
...-......++.|++ .+..++++..+|.+.+-+...... ......+.|.-.+....|+. +.+++++|+.|+.+.
T Consensus 116 ~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~l---e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~ 191 (339)
T KOG0280|consen 116 SKKISVVEALSLDIST-SGTKIFVSDSRGSISGVYETEMVL---EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLS 191 (339)
T ss_pred hhhhhheeeeEEEeec-cCceEEEEcCCCcEEEEecceeee---eecccccccceeeeeeecccCCCceEEecCCCceEE
Confidence 2111111245788998 888899999999998665554432 12223356888999999965 457899999999999
Q ss_pred EEECCC-CCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 400 GFDAGV-GRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 400 iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
.||+|. ++.+.. ..+...+.++..+|..+ .++++|+.|..|++||.++...++.. ..-.+.|+.+.++
T Consensus 192 ~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~--~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 192 CWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP--TYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIKHH 262 (339)
T ss_pred EEEecCCcceeeecceeeecceEEEecCCCCC--ceEEEeccccceeeeehhcccCcccc-------CccccceEEEEec
Confidence 999994 333333 33457788888887654 59999999999999999977665532 2234789999999
Q ss_pred CC--CCEEEEEeCCCcEEEEeccCCCCc---ccccccccccceeEEEEcCCCCEEEEEE-cCCcEE-EE
Q 009203 477 PD--GLYITSGSADPVIHLFDIRYSANK---PSQSIRAHQKRVFKAVWHYSHPLLISIS-SDLNIG-LH 538 (540)
Q Consensus 477 p~--g~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~h~~~i~~l~~s~~~~~l~s~~-~dg~v~-iw 538 (540)
|. +..|+++-.+| .+|-+.+....+ .+...+.|.+-...-.|.....+|+||+ +|+.++ +|
T Consensus 263 p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 263 PEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred chhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 94 34555555555 778887764334 4445567887788888865556788875 677755 76
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=9.2e-13 Score=123.79 Aligned_cols=269 Identities=13% Similarity=0.150 Sum_probs=174.5
Q ss_pred ceEEEEEcCCCCCcceeecccc----------------cCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203 246 GVIRLWQLQSRGSGASLLSTTD----------------CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK 309 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~----------------~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~ 309 (540)
+.|+||++..++.+........ .....|...-+.|..+|||+++++. |...-.|++||+..
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAt---G~YKP~ikvydlan 83 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLAT---GTYKPQIKVYDLAN 83 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEe---cccCCceEEEEccc
Confidence 3588888877665443322000 0002567778899999999977655 37889999999985
Q ss_pred CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE
Q 009203 310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV 389 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 389 (540)
-. +. ++. |..+.+..+....+|-..++.-..|.+|.+........ .+. -...-.+++++.-..-|
T Consensus 84 LS----LK-FER--hlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy-----~~R---IP~~GRDm~y~~~scDl 148 (703)
T KOG2321|consen 84 LS----LK-FER--HLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY-----RTR---IPKFGRDMKYHKPSCDL 148 (703)
T ss_pred ce----ee-eee--cccccceeEEEeccchhhheEeecCceeeehhhcCeee-----eee---cCcCCccccccCCCccE
Confidence 31 22 221 22233333333332555566667788877654433211 000 11223456665433445
Q ss_pred EEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcccc
Q 009203 390 LSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQS 468 (540)
Q Consensus 390 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 468 (540)
++++....|+-+++..|..+..+... +.+.++..++.. .+|++|+.+|.|.+||.++...... +........|.+
T Consensus 149 y~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h---gLla~Gt~~g~VEfwDpR~ksrv~~-l~~~~~v~s~pg 224 (703)
T KOG2321|consen 149 YLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH---GLLACGTEDGVVEFWDPRDKSRVGT-LDAASSVNSHPG 224 (703)
T ss_pred EEeecCcceEEEEccccccccccccccccceeeeecCcc---ceEEecccCceEEEecchhhhhhee-eecccccCCCcc
Confidence 55555568999999999988877766 556677778776 5899999999999999998764332 222222333433
Q ss_pred -----CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCC--CEEEEEEcCCcEEEEe
Q 009203 469 -----ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSH--PLLISISSDLNIGLHK 539 (540)
Q Consensus 469 -----~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~--~~l~s~~~dg~v~iw~ 539 (540)
.|+++.|+.+|-.+++|..+|.+.|||++. .+++..- .+..-+|..+.|.+.+ +.|+|. ....++|||
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa--~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA--SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWD 300 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEccc--CCceeecccCCccceeeecccccCCCceEEec-chHHhhhcc
Confidence 499999999999999999999999999997 4444332 2334589999997763 456655 457889997
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.2e-11 Score=116.38 Aligned_cols=277 Identities=12% Similarity=0.141 Sum_probs=186.4
Q ss_pred CceEEEEEecCCCcEEEEE-----eC-----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe
Q 009203 224 RKLRSLSLNPVNEQLFVTS-----AL-----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH 293 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg-----~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~ 293 (540)
..++++.|+| .+.+|.|- .. .-.+++|++.++.....+... .... ++..|+.|..+.+-
T Consensus 74 ~~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k-------~Q~~-W~~qfs~dEsl~ar-- 142 (566)
T KOG2315|consen 74 KKTYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK-------MQNG-WVPQFSIDESLAAR-- 142 (566)
T ss_pred ceeeeeeecc-cccccccccccccccCCCCCCCceeeeeeccceehhheehh-------hhcC-cccccccchhhhhh--
Confidence 3789999999 58888873 11 245779999985444444321 1121 57899988765544
Q ss_pred ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-CCCEEEE-----EecCCcEEEEecCCCCCcc--cc
Q 009203 294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFAT-----GGSDHAVVLWSERDAEDSW--KP 365 (540)
Q Consensus 294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s-----~~~dg~i~iwd~~~~~~~~--~~ 365 (540)
-..+.+.+|++... ......+. ...|..+.++|. ....+++ ++.-+.|+||......... ..
T Consensus 143 ---lv~nev~f~~~~~f--~~~~~kl~-----~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ 212 (566)
T KOG2315|consen 143 ---LVSNEVQFYDLGSF--KTIQHKLS-----VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN 212 (566)
T ss_pred ---hhcceEEEEecCCc--cceeeeee-----ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhh
Confidence 46788999999863 22333332 355899999983 2333333 2445679999887322100 01
Q ss_pred ceeecccCCcceeEEEeccCCCEEEE-Ee--CC---------CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEE
Q 009203 366 KALHRNLHSSAVMGVAGMQQKQIVLS-AG--AD---------KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMV 433 (540)
Q Consensus 366 ~~~~~~~~~~~v~~l~~s~~~~~l~~-~~--~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 433 (540)
+.+ ....=..+.|++-|.-|++ ++ -| .+++++++....+.......+++.++.|+|++.. ..+
T Consensus 213 ksF----Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E-F~V 287 (566)
T KOG2315|consen 213 KSF----FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE-FAV 287 (566)
T ss_pred ccc----cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE-EEE
Confidence 111 1222345778876654332 22 12 3688888885555666777899999999998854 466
Q ss_pred EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCccccccccc
Q 009203 434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~h 510 (540)
+.|..-..+.|||++.. ++..+ -.++=+++-|+|.|++|+.+|-+ |.|-|||+.+ .+++..+..-
T Consensus 288 vyGfMPAkvtifnlr~~--~v~df--------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~ 355 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLRGK--PVFDF--------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAA 355 (566)
T ss_pred EEecccceEEEEcCCCC--EeEeC--------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccC
Confidence 67888889999999843 22222 24567889999999999887754 8999999998 7888877754
Q ss_pred ccceeEEEEcCCCCEEEEEE------cCCcEEEEeC
Q 009203 511 QKRVFKAVWHYSHPLLISIS------SDLNIGLHKI 540 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~------~dg~v~iw~l 540 (540)
. -+-+.|+|||.+|+|+. .|+.++||++
T Consensus 356 ~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 356 N--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred C--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 4 45689999999998886 4678999985
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.3e-12 Score=126.95 Aligned_cols=233 Identities=15% Similarity=0.135 Sum_probs=145.7
Q ss_pred CeEEEeccc----hhcccccCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCceeE
Q 009203 208 ATIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDI 280 (540)
Q Consensus 208 ~~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 280 (540)
..|.+||.. +.+..|...+.+.+|+|| |+.|+..+.+ ..|.+||+.++... .+ . .+.....++
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~-~l-~-------~~~g~~~~~ 253 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQRE-LV-A-------SFRGINGAP 253 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEE-Ee-c-------cCCCCccCc
Confidence 457777643 345667788999999997 7777776643 46999999876531 11 1 122334578
Q ss_pred EEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCc--EEEEecC
Q 009203 281 AWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHA--VVLWSER 357 (540)
Q Consensus 281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~--i~iwd~~ 357 (540)
+|+|||+.|+..... ..+..|.+||+.++. ...+.. +.......+|+| +++.|+.++. +|. |+++|+.
T Consensus 254 ~~SpDG~~l~~~~s~-~g~~~Iy~~d~~~g~----~~~lt~---~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 254 SFSPDGRRLALTLSR-DGNPEIYVMDLGSRQ----LTRLTN---HFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred eECCCCCEEEEEEeC-CCCceEEEEECCCCC----eEECcc---CCCCccceEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 999999977643211 223469999998762 222222 233456789999 8888877664 444 6677776
Q ss_pred CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC---eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203 358 DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK---RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 434 (540)
+++. ..+.. +.......+|+|+|+.|+..+.++ .|.+||+.++...... .........|+|++ .+++
T Consensus 325 ~g~~----~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spdG---~~i~ 394 (433)
T PRK04922 325 GGSA----ERLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPNG---SMVL 394 (433)
T ss_pred CCCe----EEeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCCC---CEEE
Confidence 6652 33332 233455789999999998776543 6999999887654322 22234456888887 4444
Q ss_pred EEcC---CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 435 TGTP---GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 435 ~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
..+. .+.|.++++..... . .+..+.+.+...+|+|
T Consensus 395 ~~s~~~g~~~L~~~~~~g~~~--~------~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 395 YATREGGRGVLAAVSTDGRVR--Q------RLVSADGEVREPAWSP 432 (433)
T ss_pred EEEecCCceEEEEEECCCCce--E------EcccCCCCCCCCccCC
Confidence 4433 34577778754332 1 1222344566677776
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=9.1e-13 Score=114.58 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=103.4
Q ss_pred eEEEeccCCCEEEEEeC----------CCeEEEEECCC-CCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEE
Q 009203 378 MGVAGMQQKQIVLSAGA----------DKRIIGFDAGV-GRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRL 444 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~----------dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i 444 (540)
..+.|+++|.+|++-.. -|...+|.++. +..... ....+.+.++.|+|++.. ..++.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~-favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNE-FAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCE-EEEEEccCCcccEE
Confidence 46789999988776433 12344554432 222222 334456999999998743 23455667789999
Q ss_pred EECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeccCCCCcccccccccccceeEEEEcC
Q 009203 445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA---DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY 521 (540)
Q Consensus 445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~ 521 (540)
||++ .. ....+ +...+..+.|||+|++|++++. .|.|.+||++. .+.+.... |. .++.++|+|
T Consensus 88 yd~~-~~-~i~~~--------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~~-~~-~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-GK-KIFSF--------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTFE-HS-DATDVEWSP 153 (194)
T ss_pred EcCc-cc-EeEee--------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeeccc-cC-cEEEEEEcC
Confidence 9997 22 12211 2456788999999999999874 46799999996 66666655 33 478999999
Q ss_pred CCCEEEEEEc------CCcEEEEeC
Q 009203 522 SHPLLISISS------DLNIGLHKI 540 (540)
Q Consensus 522 ~~~~l~s~~~------dg~v~iw~l 540 (540)
||++|+++.. |..++||++
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEe
Confidence 9999999864 788999975
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-12 Score=115.67 Aligned_cols=272 Identities=14% Similarity=0.187 Sum_probs=173.1
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-cceeecccccCC--------CCCCCCceeEEEecCCC--eEEEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLS--------PKHRRWPEDIAWHPQGN--SLFSA 292 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~--------~~h~~~V~~~~~~~~~~--~l~s~ 292 (540)
+-|.+|.|..+ |.+||||..+|.|.++.-..... ...+...+.... -.-...|..+.|.++++ .++..
T Consensus 26 diis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 26 DIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred cceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 56899999995 99999999999999997654332 111211110000 01135588999998766 34444
Q ss_pred eecCCCCCeEEEEecCCCCCce---------------e--EEeec-------------CCCCcccceeEEEEeCCCCCEE
Q 009203 293 HTADSGDSQISVLNLNKTKGRA---------------C--VTFLD-------------DKPHVKGIINSIIFLPWENPCF 342 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~---------------~--~~~~~-------------~~~~~~~~v~~~~~~p~~~~~l 342 (540)
+.|.+|++|.+....... . +..+. -...|...|++|.++. |...+
T Consensus 105 ----tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~ 179 (433)
T KOG1354|consen 105 ----TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETF 179 (433)
T ss_pred ----cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceE
Confidence 799999999886432111 0 00000 0114677799999998 88888
Q ss_pred EEEecCCcEEEEecCCCCCccccceee---cccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeeccCccE
Q 009203 343 ATGGSDHAVVLWSERDAEDSWKPKALH---RNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQIESKC 418 (540)
Q Consensus 343 ~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 418 (540)
+++. |=.|.+|.++-....+.+.-+. ...-+.-|++..|+|. -++++-.+..|+|++.|++....-.
T Consensus 180 lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd-------- 250 (433)
T KOG1354|consen 180 LSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD-------- 250 (433)
T ss_pred eecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc--------
Confidence 8765 6789999987543321111111 0112345788889884 4667778888999999998543210
Q ss_pred EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
..-+++.......... -+.+--..|..+.|+++|+|+++-+. -+|++||++.
T Consensus 251 ---------------------~hsKlfEepedp~~rs------ffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 251 ---------------------AHSKLFEEPEDPSSRS------FFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred ---------------------chhhhhccccCCcchh------hHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 0111111110000000 11223357889999999999998743 6799999975
Q ss_pred CCCccccccccccc------------ce---eEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 499 SANKPSQSIRAHQK------------RV---FKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 499 ~~~~~~~~~~~h~~------------~i---~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
. .+++.++..|.. .| ..++|+-++.+++||+....+++++
T Consensus 303 e-~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 303 E-AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred c-CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 4 567777765532 23 4688999999999999999999987
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.3e-11 Score=122.81 Aligned_cols=204 Identities=13% Similarity=0.084 Sum_probs=134.6
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CCcEEEEecCCCCCccccceeecccCCc
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
...|.+||.+... .+.+.. +...+.+.+|+| +++.|+..+. +..|++||+.+++. ..+. .+.+
T Consensus 181 ~~~l~~~d~dg~~----~~~lt~---~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~--~~~g 246 (435)
T PRK05137 181 IKRLAIMDQDGAN----VRYLTD---GSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR----ELVG--NFPG 246 (435)
T ss_pred ceEEEEECCCCCC----cEEEec---CCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE----EEee--cCCC
Confidence 3478889986432 222222 346799999999 9998887764 46899999988763 3332 2455
Q ss_pred ceeEEEeccCCCEEE-EEeCCCe--EEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc-CCC--eEEEEECCC
Q 009203 376 AVMGVAGMQQKQIVL-SAGADKR--IIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT-PGR--QLRLYDIRL 449 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~v~i~d~~~ 449 (540)
.+.+..|+|||+.|+ +.+.++. |++||+.++................|+|++ ..|+..+ .+| .|++||+.+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG---~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDG---SQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCC---CEEEEEECCCCCCeEEEEECCC
Confidence 677899999998876 4455554 888899887764444344445568899987 4555444 333 688888876
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL 526 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l 526 (540)
+..... ..+...+....|+|||++|+..+.+ ..|.+||+... ....+. ....+..+.|+|||+.|
T Consensus 324 ~~~~~l--------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---~~~~lt-~~~~~~~p~~spDG~~i 391 (435)
T PRK05137 324 SNPRRI--------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---GERILT-SGFLVEGPTWAPNGRVI 391 (435)
T ss_pred CCeEEe--------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---ceEecc-CCCCCCCCeECCCCCEE
Confidence 543221 1123345678899999999876543 35788887642 222222 22246788999999987
Q ss_pred EEEEc
Q 009203 527 ISISS 531 (540)
Q Consensus 527 ~s~~~ 531 (540)
+..+.
T Consensus 392 ~~~~~ 396 (435)
T PRK05137 392 MFFRQ 396 (435)
T ss_pred EEEEc
Confidence 76554
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=9.2e-12 Score=123.30 Aligned_cols=234 Identities=14% Similarity=0.137 Sum_probs=140.2
Q ss_pred CeEEEeccc----hhcccccCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCceeE
Q 009203 208 ATIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDI 280 (540)
Q Consensus 208 ~~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 280 (540)
..+.+++.. ..+..+...+.+.+|+|| |+.|+..+.+ ..|.+||+.+++.. .+ . ...+.+.+.
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~-~l-~-------~~~g~~~~~ 245 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRR-VV-A-------NFKGSNSAP 245 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEE-Ee-e-------cCCCCccce
Confidence 345555543 335577889999999997 7777776543 35999999877532 12 1 122345689
Q ss_pred EEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEec--C
Q 009203 281 AWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSE--R 357 (540)
Q Consensus 281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~--~ 357 (540)
+|+|||+.|+... +.++...||.++.... . ...+.. +.+......|+| +|+.|+..+. +|...||.+ .
T Consensus 246 ~~SPDG~~la~~~---~~~g~~~Iy~~d~~~~-~-~~~lt~---~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 246 AWSPDGRTLAVAL---SRDGNSQIYTVNADGS-G-LRRLTQ---SSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred EECCCCCEEEEEE---ccCCCceEEEEECCCC-C-cEECCC---CCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECC
Confidence 9999999886431 6677766665542211 1 233332 234456788999 8988876654 456666654 4
Q ss_pred CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC---eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203 358 DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK---RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 434 (540)
++. ...+.. .........|+|+|++|+..+.++ .|.+||+.++....... ........|+|++ ..|+
T Consensus 317 ~g~----~~~lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~~~p~~spdg---~~l~ 386 (427)
T PRK02889 317 GGA----AQRVTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TTRDESPSFAPNG---RYIL 386 (427)
T ss_pred CCc----eEEEec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CCCccCceECCCC---CEEE
Confidence 443 222322 223345678999999998877654 69999998876543322 2234567889987 4454
Q ss_pred EEcC-CC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC
Q 009203 435 TGTP-GR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD 478 (540)
Q Consensus 435 ~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 478 (540)
..+. .| .+.+.++.... .. .+..+.+.+...+|+|-
T Consensus 387 ~~~~~~g~~~l~~~~~~g~~-~~-------~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 387 YATQQGGRSVLAAVSSDGRI-KQ-------RLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEecCCCEEEEEEECCCCc-eE-------EeecCCCCCCCCccCCC
Confidence 4443 33 35555553221 11 12233445666777763
No 240
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=6.1e-10 Score=100.06 Aligned_cols=281 Identities=12% Similarity=0.113 Sum_probs=183.4
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH 324 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 324 (540)
+.-|.+|++.+.......... -.+...++-++|+|++++|.++... +.+|.|..|.++...+ .+..+.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-----v~~~~nptyl~~~~~~~~LY~v~~~-~~~ggvaay~iD~~~G--~Lt~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-----VAELGNPTYLAVNPDQRHLYVVNEP-GEEGGVAAYRIDPDDG--RLTFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhh-----ccccCCCceEEECCCCCEEEEEEec-CCcCcEEEEEEcCCCC--eEEEeecccc
Confidence 467999999854432222221 2445667889999999999988332 3468888888774311 1222222111
Q ss_pred cccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeecccCCcc----------eeEEEeccCCCEEEEEe
Q 009203 325 VKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHRNLHSSA----------VMGVAGMQQKQIVLSAG 393 (540)
Q Consensus 325 ~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----------v~~l~~s~~~~~l~~~~ 393 (540)
...+.+.+++++ ++++++++.. .|.|.++-++....++..... ..|.+. +....+.|++++|++..
T Consensus 87 ~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~--~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 87 PGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQV--VKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred CCCCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceee--eecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 223448899999 9988888764 478999999763332222111 224444 88899999999998876
Q ss_pred C-CCeEEEEECCCCCeee----eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc----ccccC
Q 009203 394 A-DKRIIGFDAGVGRADF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW----KQESS 464 (540)
Q Consensus 394 ~-dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----~~~~~ 464 (540)
. ...|.+|++..|.... ....+....-+.|+|++.- ..+++--+++|-+|........+..+.. ...+.
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~--aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY--AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE--EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 5 3379999999876632 2355677789999998832 2344556899999999875322222211 11222
Q ss_pred ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCcc--cccccccccceeEEEEcCCCCEEEEEEcC-CcEEEEe
Q 009203 465 ESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSANKP--SQSIRAHQKRVFKAVWHYSHPLLISISSD-LNIGLHK 539 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~~--~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-g~v~iw~ 539 (540)
+ ......|.+++||++|.++.. ...|.+|.+....+++ +.....+......+.|+++|++|+++..| ..|.+|.
T Consensus 242 g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 242 G-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred C-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 2 345778999999999988753 3478899888643331 22222344457899999999999888766 4577764
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.7e-11 Score=122.30 Aligned_cols=237 Identities=13% Similarity=0.125 Sum_probs=146.0
Q ss_pred eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcc
Q 009203 247 VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVK 326 (540)
Q Consensus 247 ~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 326 (540)
.|.++|..... ...+ ..+...+...+|+|||+.|+..... .....|.+||+.++.. .. +.. ..
T Consensus 180 ~l~~~d~~g~~-~~~l--------~~~~~~~~~p~wSpDG~~la~~s~~-~~~~~l~~~~l~~g~~---~~-l~~---~~ 242 (430)
T PRK00178 180 TLQRSDYDGAR-AVTL--------LQSREPILSPRWSPDGKRIAYVSFE-QKRPRIFVQNLDTGRR---EQ-ITN---FE 242 (430)
T ss_pred EEEEECCCCCC-ceEE--------ecCCCceeeeeECCCCCEEEEEEcC-CCCCEEEEEECCCCCE---EE-ccC---CC
Confidence 46677776433 2333 2445668899999999998876211 1235799999987632 22 221 12
Q ss_pred cceeEEEEeCCCCCEEE-EEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C--CeEEE
Q 009203 327 GIINSIIFLPWENPCFA-TGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D--KRIIG 400 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d--g~i~i 400 (540)
+.+...+|+| +++.|+ +...+| .|++||+.++.. ..+. .+........|+|||+.|+..+. + ..|++
T Consensus 243 g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~----~~lt--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 243 GLNGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQL----SRVT--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK 315 (430)
T ss_pred CCcCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCe----EEcc--cCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 3455789999 888776 444454 588889988763 2232 24445667899999998877664 3 35888
Q ss_pred EECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC-CC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 401 FDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP-GR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 401 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
+|+.+++...............|+|++ ..++..+. ++ .|.+||+.++...... . ........|+|
T Consensus 316 ~d~~~g~~~~lt~~~~~~~~~~~Spdg---~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-------~--~~~~~~p~~sp 383 (430)
T PRK00178 316 VNVNGGRAERVTFVGNYNARPRLSADG---KTLVMVHRQDGNFHVAAQDLQRGSVRILT-------D--TSLDESPSVAP 383 (430)
T ss_pred EECCCCCEEEeecCCCCccceEECCCC---CEEEEEEccCCceEEEEEECCCCCEEEcc-------C--CCCCCCceECC
Confidence 888877653332222233456788887 34544433 33 5888999876532211 0 11122458999
Q ss_pred CCCEEEEEeCC-C--cEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203 478 DGLYITSGSAD-P--VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 478 ~g~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~ 522 (540)
||++|+..+.+ | .|+++++. +.....+..+.+.+...+|+|-
T Consensus 384 dg~~i~~~~~~~g~~~l~~~~~~---g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 384 NGTMLIYATRQQGRGVLMLVSIN---GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCEEEEEEecCCceEEEEEECC---CCceEECcCCCCCcCCCccCCC
Confidence 99998876543 3 46666665 3444445555566788888873
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=1.3e-11 Score=123.01 Aligned_cols=235 Identities=14% Similarity=0.128 Sum_probs=146.2
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV 325 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 325 (540)
..|.++|..... ...+ ..+...+...+|+|||++|+.+... .....|++||+.++.. ... .. +
T Consensus 170 ~~l~~~d~~g~~-~~~l--------~~~~~~~~~p~~Spdg~~la~~~~~-~~~~~i~v~d~~~g~~---~~~-~~---~ 232 (417)
T TIGR02800 170 YELQVADYDGAN-PQTI--------TRSREPILSPAWSPDGQKLAYVSFE-SGKPEIYVQDLATGQR---EKV-AS---F 232 (417)
T ss_pred ceEEEEcCCCCC-CEEe--------ecCCCceecccCCCCCCEEEEEEcC-CCCcEEEEEECCCCCE---EEe-ec---C
Confidence 357777775332 2333 2344567889999999999887321 2336899999987632 211 11 2
Q ss_pred ccceeEEEEeCCCCCEEE-EEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-C--eEE
Q 009203 326 KGIINSIIFLPWENPCFA-TGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RII 399 (540)
Q Consensus 326 ~~~v~~~~~~p~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~ 399 (540)
.+.+.+++|+| +++.|+ +.+.++ .|++||+.++.. ..+. .+........|+|+|+.|+.++.. + .|+
T Consensus 233 ~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~----~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 233 PGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQL----TRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIY 305 (417)
T ss_pred CCCccceEECC-CCCEEEEEECCCCCccEEEEECCCCCE----EECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEE
Confidence 34466789999 887665 444444 588899987652 2222 233445577899999988776653 2 688
Q ss_pred EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC---eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 400 GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR---QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 400 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
++|+.+++...............|+|++ .+++.++.++ .|.+||+.++..... .. ........|+
T Consensus 306 ~~d~~~~~~~~l~~~~~~~~~~~~spdg---~~i~~~~~~~~~~~i~~~d~~~~~~~~l--------~~-~~~~~~p~~s 373 (417)
T TIGR02800 306 MMDADGGEVRRLTFRGGYNASPSWSPDG---DLIAFVHREGGGFNIAVMDLDGGGERVL--------TD-TGLDESPSFA 373 (417)
T ss_pred EEECCCCCEEEeecCCCCccCeEECCCC---CEEEEEEccCCceEEEEEeCCCCCeEEc--------cC-CCCCCCceEC
Confidence 8898877654433344555677889887 5666666554 789999887543211 11 1123456899
Q ss_pred CCCCEEEEEeCCC---cEEEEeccCCCCcccccccccccceeEEEE
Q 009203 477 PDGLYITSGSADP---VIHLFDIRYSANKPSQSIRAHQKRVFKAVW 519 (540)
Q Consensus 477 p~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~ 519 (540)
|||++|+..+.++ .+++.+.. +.....+..+.+.+..++|
T Consensus 374 pdg~~l~~~~~~~~~~~l~~~~~~---g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 374 PNGRMILYATTRGGRGVLGLVSTD---GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CCCCEEEEEEeCCCcEEEEEEECC---CceeeECCCCCCCcCCCCC
Confidence 9999988776654 34555544 4444444444455555555
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=5.1e-12 Score=109.89 Aligned_cols=156 Identities=12% Similarity=0.177 Sum_probs=106.2
Q ss_pred eEEEEeCCCCCEEEEEec----------CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe--CCCe
Q 009203 330 NSIIFLPWENPCFATGGS----------DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG--ADKR 397 (540)
Q Consensus 330 ~~~~~~p~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~--~dg~ 397 (540)
..+.|+| .|+.|+.-.. -+...+|.++..... ...+. ....++|.+++|+|+|+.+++.. .++.
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~~~i~-l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--VESIE-LKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--cceee-ccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 4677888 7776654332 134556666443321 12222 12345799999999999876653 5678
Q ss_pred EEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCCcceeeeeccccccCccccCeEEEE
Q 009203 398 IIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS 474 (540)
Q Consensus 398 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 474 (540)
|.+||++ ++.+..+. ......+.|+|.+ .++++++. .|.|.+||+++.+.... .....++.++
T Consensus 85 v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G---~~l~~~g~~n~~G~l~~wd~~~~~~i~~---------~~~~~~t~~~ 150 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFG-TQPRNTISWSPDG---RFLVLAGFGNLNGDLEFWDVRKKKKIST---------FEHSDATDVE 150 (194)
T ss_pred cEEEcCc-ccEeEeec-CCCceEEEECCCC---CEEEEEEccCCCcEEEEEECCCCEEeec---------cccCcEEEEE
Confidence 9999997 55555544 4566789999998 67777653 46799999996664322 1223578999
Q ss_pred EcCCCCEEEEEeC------CCcEEEEeccCCCCccccc
Q 009203 475 WSPDGLYITSGSA------DPVIHLFDIRYSANKPSQS 506 (540)
Q Consensus 475 ~sp~g~~l~sg~~------dg~i~iwd~~~~~~~~~~~ 506 (540)
|||||++|+++.. |+.++||++. ++.+..
T Consensus 151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~---G~~l~~ 185 (194)
T PF08662_consen 151 WSPDGRYLATATTSPRLRVDNGFKIWSFQ---GRLLYK 185 (194)
T ss_pred EcCCCCEEEEEEeccceeccccEEEEEec---CeEeEe
Confidence 9999999998864 7889999997 554443
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=4.8e-11 Score=114.41 Aligned_cols=276 Identities=12% Similarity=0.044 Sum_probs=166.0
Q ss_pred CcEE-EEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 236 EQLF-VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 236 ~~~l-~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
++++ ++-..+|.|.|.|..+.+.+.++... ...-..+.|+|||++++++ +.||.|.++|+.+. +
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~--------~~~h~~~~~s~Dgr~~yv~----~rdg~vsviD~~~~---~ 69 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG--------GAPHAGLKFSPDGRYLYVA----NRDGTVSVIDLATG---K 69 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S--------TTEEEEEE-TT-SSEEEEE----ETTSEEEEEETTSS---S
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCC--------CCceeEEEecCCCCEEEEE----cCCCeEEEEECCcc---c
Confidence 3444 45567899999999998877776421 1122347899999999998 88999999999987 3
Q ss_pred eEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeec--ccCCcceeEEEeccCCCEEEE
Q 009203 315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHR--NLHSSAVMGVAGMQQKQIVLS 391 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~ 391 (540)
.+..+.. .....++++++ +|++++++. .++.+.++|..+.+.+........ ......+.++..+|....++.
T Consensus 70 ~v~~i~~----G~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 70 VVATIKV----GGNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EEEEEE-----SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred EEEEEec----CCCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 4555543 34578999999 999887664 689999999999876322222111 113456788888888885555
Q ss_pred E-eCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceE-EEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203 392 A-GADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFM-VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ 467 (540)
Q Consensus 392 ~-~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 467 (540)
. -..+.|.+.|......+. ............++|++ ++ +++...++.|-++|..+++.....- . ....|.
T Consensus 145 ~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg---ry~~va~~~sn~i~viD~~~~k~v~~i~-~--g~~p~~ 218 (369)
T PF02239_consen 145 NLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG---RYFLVAANGSNKIAVIDTKTGKLVALID-T--GKKPHP 218 (369)
T ss_dssp EETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS---SEEEEEEGGGTEEEEEETTTTEEEEEEE----SSSBEE
T ss_pred EEccCCeEEEEEeccccccceeeecccccccccccCccc---ceeeecccccceeEEEeeccceEEEEee-c--cccccc
Confidence 4 445889999988765443 34556677788999987 44 4555677899999999876543211 0 112344
Q ss_pred cCeEEEE-------Ec--CCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE----EcCCc
Q 009203 468 SALINQS-------WS--PDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI----SSDLN 534 (540)
Q Consensus 468 ~~v~~~~-------~s--p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~----~~dg~ 534 (540)
.++..+- |. ..+...++.-....+.+||... .+.+.++....++ .-+..+|+++++... ..+++
T Consensus 219 ~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~--wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~ 295 (369)
T PF02239_consen 219 GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA--WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADT 295 (369)
T ss_dssp TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB--TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-
T ss_pred cccccccCCCcceEEeeccccceecccccCCccccchhhc--CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCce
Confidence 4444331 21 1223332222234455677776 6778888876666 778889999999887 44588
Q ss_pred EEEEeC
Q 009203 535 IGLHKI 540 (540)
Q Consensus 535 v~iw~l 540 (540)
|.|+|.
T Consensus 296 v~viD~ 301 (369)
T PF02239_consen 296 VQVIDK 301 (369)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 998874
No 245
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=9.8e-12 Score=119.86 Aligned_cols=288 Identities=13% Similarity=0.154 Sum_probs=200.4
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeec-------ccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLS-------TTDCLSPKHRRWPEDIAWHPQGNSLFSAHT 294 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~ 294 (540)
......|++|+. ...++|+|+.||.++|-.+.+...-..... .......||...|.-+.|+.+.+.|-+.
T Consensus 13 nnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS-- 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS-- 89 (1189)
T ss_pred CCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc--
Confidence 345679999998 488999999999999998876432211111 1122336999999999999999999998
Q ss_pred cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
..+|.|.+|-+-.++ .+...... ..++.|.+++|+. +|..++....||.|.+=.++.... |... -..
T Consensus 90 --Dt~GlIiVWmlykgs--W~EEMiNn--RnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRI-wgKe-----Lkg 156 (1189)
T KOG2041|consen 90 --DTSGLIIVWMLYKGS--WCEEMINN--RNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRI-WGKE-----LKG 156 (1189)
T ss_pred --CCCceEEEEeeeccc--HHHHHhhC--cCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecccee-cchh-----cch
Confidence 999999999887663 22222222 1256799999999 999999999999998877766542 1111 122
Q ss_pred cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--------eee----eccCccEEEEeec-----CCCCCceEEEEEc
Q 009203 375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--------DFK----HQIESKCMSVLPN-----PCDFNLFMVQTGT 437 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~----~~~~~~~~~~~~~-----~~~~~~~~l~~~~ 437 (540)
.....+.|++|...++.+-.+|.+.+||....-. +.. ...+..+..+.|. |..+....++++.
T Consensus 157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 2345788999999999999999999999864211 100 1112223344443 1222335889999
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---------CcEEEEeccCCCCccccccc
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---------PVIHLFDIRYSANKPSQSIR 508 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~ 508 (540)
.+|.+.+..-.+...+... ...-.+..+.|+++|.+||+++.+ +.|.+|..- +..+.+++
T Consensus 237 ~nGr~QiMR~eND~~Pvv~--------dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~---G~i~gtlk 305 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVV--------DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY---GHIVGTLK 305 (1189)
T ss_pred cCceehhhhhcCCCCCeEE--------ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc---hhheEEEe
Confidence 9999988766554433321 122468889999999999998764 356666655 78888888
Q ss_pred ccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 509 AHQKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 509 ~h~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
.....|++++|-..|-.++.+ .|+.|.+
T Consensus 306 vpg~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 306 VPGSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred cCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence 888899999998777666554 4666655
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.5e-11 Score=118.71 Aligned_cols=237 Identities=13% Similarity=0.106 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcc
Q 009203 247 VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVK 326 (540)
Q Consensus 247 ~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 326 (540)
.+.++|...... ..+ ..+...+.+..|+|||+.|+..... .....|.+||+.++.. ..+..+.
T Consensus 199 ~l~i~d~dG~~~-~~l--------~~~~~~~~~p~wSPDG~~La~~s~~-~g~~~L~~~dl~tg~~-~~lt~~~------ 261 (448)
T PRK04792 199 QLMIADYDGYNE-QML--------LRSPEPLMSPAWSPDGRKLAYVSFE-NRKAEIFVQDIYTQVR-EKVTSFP------ 261 (448)
T ss_pred EEEEEeCCCCCc-eEe--------ecCCCcccCceECCCCCEEEEEEec-CCCcEEEEEECCCCCe-EEecCCC------
Confidence 566667654332 223 2344568889999999988876221 2234688999987632 2222221
Q ss_pred cceeEEEEeCCCCCEEEE-EecCCc--EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CC--eEEE
Q 009203 327 GIINSIIFLPWENPCFAT-GGSDHA--VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DK--RIIG 400 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg--~i~i 400 (540)
+.....+|+| +++.|+. .+.+|. |++||+.+++. ..+.. +.......+|+|||+.|+..+. ++ .|++
T Consensus 262 g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~----~~lt~--~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 262 GINGAPRFSP-DGKKLALVLSKDGQPEIYVVDIATKAL----TRITR--HRAIDTEPSWHPDGKSLIFTSERGGKPQIYR 334 (448)
T ss_pred CCcCCeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCe----EECcc--CCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 2345789999 8887764 555664 77888887752 33322 4445677899999998877654 33 5777
Q ss_pred EECCCCCeeeeeccCccEEEEeecCCCCCceEEEE-EcCCC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 401 FDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQT-GTPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 401 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
+|+.+++...............|+|++. +++. ...++ .|.++|+.++...... .. .......|+|
T Consensus 335 ~dl~~g~~~~Lt~~g~~~~~~~~SpDG~---~l~~~~~~~g~~~I~~~dl~~g~~~~lt--------~~-~~d~~ps~sp 402 (448)
T PRK04792 335 VNLASGKVSRLTFEGEQNLGGSITPDGR---SMIMVNRTNGKFNIARQDLETGAMQVLT--------ST-RLDESPSVAP 402 (448)
T ss_pred EECCCCCEEEEecCCCCCcCeeECCCCC---EEEEEEecCCceEEEEEECCCCCeEEcc--------CC-CCCCCceECC
Confidence 7888776543322222334567888873 4443 33344 4666787766532211 01 1112347999
Q ss_pred CCCEEEEEeCC-Cc--EEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203 478 DGLYITSGSAD-PV--IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 478 ~g~~l~sg~~d-g~--i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~ 522 (540)
||++|+..+.+ |. +++++.+ +.....+..+.+.+...+|+|-
T Consensus 403 dG~~I~~~~~~~g~~~l~~~~~~---G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 403 NGTMVIYSTTYQGKQVLAAVSID---GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECC---CCceEECcCCCCCcCCCccCCC
Confidence 99988765543 33 6667765 5555666666667788889873
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=1.1e-11 Score=109.51 Aligned_cols=286 Identities=17% Similarity=0.185 Sum_probs=178.2
Q ss_pred CceEEEEEecCC-CcEEEEEeCCceEEEEEcCCCCCcc---------------eee----c---------ccccCCCCCC
Q 009203 224 RKLRSLSLNPVN-EQLFVTSALDGVIRLWQLQSRGSGA---------------SLL----S---------TTDCLSPKHR 274 (540)
Q Consensus 224 ~~V~~l~~spd~-~~~l~tg~~dg~v~iw~~~~~~~~~---------------~~~----~---------~~~~~~~~h~ 274 (540)
..|+.+.|.+++ ...++..+.|.+|++|.+....... .+. . ........|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 578999998763 3466777889999999986543211 000 0 0011114688
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc----ccceeEEEEeCCCCCEEEEEecCCc
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV----KGIINSIIFLPWENPCFATGGSDHA 350 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~s~~~dg~ 350 (540)
--|+++.++.|+..++++ .|=.|-+|++.-. .........+|+. ..-|++..|+|...+.|+..+..|+
T Consensus 165 yhiNSIS~NsD~Et~lSA-----DdLRINLWnlei~--d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSA-----DDLRINLWNLEII--DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred eEeeeeeecCccceEeec-----cceeeeecccccc--CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 889999999999999995 8899999999754 2445555554431 2358889999988899999999999
Q ss_pred EEEEecCCCCCcccc-ceee----------cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeecc----
Q 009203 351 VVLWSERDAEDSWKP-KALH----------RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQI---- 414 (540)
Q Consensus 351 i~iwd~~~~~~~~~~-~~~~----------~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~---- 414 (540)
|++.|++.....-.. +.+. ...--..|..+.|+++|+++++-+. -+|++||+.. .+++...+.
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence 999999954321000 1110 0112356889999999999998665 4899999943 444333221
Q ss_pred --------C----ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203 415 --------E----SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI 482 (540)
Q Consensus 415 --------~----~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 482 (540)
+ -.-..++|+.++ .++++|+..+.+++|++..+......+.... ....+..+. .-+.+
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~---~~v~TGsy~n~frvf~~~~gsk~d~tl~asr----~~~~~~~~~---k~~~V 386 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGND---SYVMTGSYNNVFRVFNLARGSKEDFTLEASR----KNMKPRKVL---KLRLV 386 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCc---ceEecccccceEEEecCCCCcceeecccccc----cCCcccccc---cceee
Confidence 1 123456777766 6999999999999999776554332221100 000111110 12344
Q ss_pred EEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 483 TSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
.+++......+|-- .+. ....|...+|+|..+.+|.+..+. ++||
T Consensus 387 ~~~g~r~~~~~~vd---------~ld-f~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 387 SSSGKRKRDEISVD---------ALD-FRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ecCCCccccccccc---------hhh-hhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 44544433222111 111 123467789999999888887654 4444
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.44 E-value=2.5e-11 Score=105.11 Aligned_cols=258 Identities=15% Similarity=0.153 Sum_probs=169.9
Q ss_pred cCceEEEEEec--CCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 223 KRKLRSLSLNP--VNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 223 ~~~V~~l~~sp--d~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
+..+..+.|.. ++|. .|+-+-.+|.|.++..........+..-. .. .-....-.++.|++.+..++++ ..+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-~~-ki~~~~~lslD~~~~~~~i~vs----~s~ 142 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-SK-KISVVEALSLDISTSGTKIFVS----DSR 142 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc-hh-hhhheeeeEEEeeccCceEEEE----cCC
Confidence 34566667752 3344 56667778999999876544332221110 00 0000113478899999999998 888
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC-CccccceeecccCCccee
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE-DSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~ 378 (540)
|.+.+-+..... .+.++..+ .|.-+++-..|+..+.+++.+|+.|+.+..||++... .+|.- ...|...|.
T Consensus 143 G~~~~v~~t~~~-le~vq~wk---~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~ 214 (339)
T KOG0280|consen 143 GSISGVYETEMV-LEKVQTWK---VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVV 214 (339)
T ss_pred CcEEEEecceee-eeeccccc---ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceE
Confidence 988855544321 11222333 4677899999998888999999999999999999433 22211 234889999
Q ss_pred EEEecc-CCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 379 GVAGMQ-QKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 379 ~l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
++.-+| .+.+|++|+.|-.|++||.|+ +++++.-...+.+..+..+|.... .++.++.-+..+|-+..........
T Consensus 215 SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~--~lL~~CMh~G~ki~~~~~~~~e~~~ 292 (339)
T KOG0280|consen 215 SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFH--RLLAACMHNGAKILDSSDKVLEFQI 292 (339)
T ss_pred EEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhh--HHHHHHHhcCceEEEecccccchhe
Confidence 999876 578999999999999999994 888888888899999999997642 2333444455677777654433111
Q ss_pred eccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEE-EEeccC
Q 009203 457 FGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIH-LFDIRY 498 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~-iwd~~~ 498 (540)
. ....+.|.+-+..-.|.....+||+++ .|..++ +|-.-+
T Consensus 293 ~--~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 293 V--LPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred e--eeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 0 113456776666777755556788865 466644 665443
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=7.9e-10 Score=106.33 Aligned_cols=281 Identities=14% Similarity=0.176 Sum_probs=168.7
Q ss_pred CceEEEEEecCCCcEEEEEeC----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 224 RKLRSLSLNPVNEQLFVTSAL----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
.....|+++|+ +++|.+... +|.|..|.+.......+...... ........++++|++++|+++. ..+
T Consensus 37 ~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~----~~g~~p~~i~~~~~g~~l~van---y~~ 108 (345)
T PF10282_consen 37 ENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP----SGGSSPCHIAVDPDGRFLYVAN---YGG 108 (345)
T ss_dssp SSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE----ESSSCEEEEEECTTSSEEEEEE---TTT
T ss_pred CCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec----cCCCCcEEEEEecCCCEEEEEE---ccC
Confidence 45677889996 777777655 57999999887521122222111 1123356799999999998882 579
Q ss_pred CeEEEEecCCCCC-ceeEEeecC-------CCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCcc-ccceee
Q 009203 300 SQISVLNLNKTKG-RACVTFLDD-------KPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSW-KPKALH 369 (540)
Q Consensus 300 ~~i~vwd~~~~~~-~~~~~~~~~-------~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~-~~~~~~ 369 (540)
|.|.++++..... ......+.. .........++.|+| +++++++... ...|.+|++....... ....+
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~- 186 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI- 186 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-
Confidence 9999999986411 122112210 011234578999999 8888777643 3579999998765211 11111
Q ss_pred cccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECC--CCCeee--e---e----ccCccEEEEeecCCCCCceEEEEEc
Q 009203 370 RNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAG--VGRADF--K---H----QIESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 370 ~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~--~~~~~~--~---~----~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
..........++|+|+++++++... ++.|.+|++. .+.... . . ........+.++|++. .++++..
T Consensus 187 ~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--~lyvsnr 264 (345)
T PF10282_consen 187 KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--FLYVSNR 264 (345)
T ss_dssp ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--EEEEEEC
T ss_pred ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--EEEEEec
Confidence 1234566889999999998877655 7789999888 443311 1 1 1122577888999883 2445556
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCccccccc-cccccee
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIR-AHQKRVF 515 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~-~h~~~i~ 515 (540)
..+.|.+|++......+.... ...........++++|+|++|+++. .++.|.+|+++...+.+...-. .......
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~---~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQ---TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEE---EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred cCCEEEEEEEecCCCceEEEE---EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 678999999953321222221 1122233589999999999998776 5678999998753344332221 1233456
Q ss_pred EEEE
Q 009203 516 KAVW 519 (540)
Q Consensus 516 ~l~~ 519 (540)
||.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6655
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=9e-12 Score=110.13 Aligned_cols=248 Identities=14% Similarity=0.152 Sum_probs=178.2
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC-CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN-KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH 349 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 349 (540)
.||.+.|++...-|...-+++. +.|.+++||--. .++....+.. ....++.++.+.+ +...|+.|-..|
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~----s~drtvrv~lkrds~q~wpsI~~-----~mP~~~~~~~y~~-e~~~L~vg~~ng 90 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISV----SEDRTVRVWLKRDSGQYWPSIYH-----YMPSPCSAMEYVS-ESRRLYVGQDNG 90 (404)
T ss_pred cCchhhhhhheeccCCCCeEEc----cccceeeeEEeccccccCchhhh-----hCCCCceEeeeec-cceEEEEEEecc
Confidence 5888889988888888889998 999999999543 3322111211 1246789999999 888999999999
Q ss_pred cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203 350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN 429 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (540)
++.-+.+...-..... .-....|...+..+-|+....++++.+.|..+.---.+.+..+-.+..........++-
T Consensus 91 tvtefs~sedfnkm~~-~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~---- 165 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTF-LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA---- 165 (404)
T ss_pred eEEEEEhhhhhhhcch-hhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee----
Confidence 9998876542210001 11124589999999999888999999999877655555555433322222222221111
Q ss_pred ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203 430 LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 430 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
.+...|...|.|.+-.+....+.. ...+.+|.+.+++++|.|....|++|..|..+.+||+... ......+.+
T Consensus 166 -~~~fvGd~~gqvt~lr~~~~~~~~-----i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-~g~~~el~g 238 (404)
T KOG1409|consen 166 -LYAFVGDHSGQITMLKLEQNGCQL-----ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-KGTAYELQG 238 (404)
T ss_pred -EEEEecccccceEEEEEeecCCce-----EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC-cceeeeecc
Confidence 245556666766666554333222 2266899999999999999999999999999999999853 334556778
Q ss_pred cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|.+.|..+...+.-+.|++++.||.|.+|++
T Consensus 239 h~~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 239 HNDKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred chhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 9999999999888899999999999999985
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=5.9e-11 Score=119.60 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=113.8
Q ss_pred EEecCCCCeEEEeccc----hh-cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203 201 VRTSASPATIHCHTSN----HV-SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR 275 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~----~~-~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~ 275 (540)
+++++.-+.+.+|... .+ +.||.+.|..+.|+.| |+++++.|.|.++|+|++++.+... +..-+|..
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fgHsa 219 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLG-------CTGFGHSA 219 (967)
T ss_pred EEeccccccEEEEeccccCCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccC-------cccccccc
Confidence 5566667778888554 34 8999999999999995 9999999999999999999987554 22259999
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.|+.++|.|+ .|+++ +.|.+.++|+.+. ..+..+.+ |....++.++..+ +...++|++.|+.+++||
T Consensus 220 Rvw~~~~~~n--~i~t~----gedctcrvW~~~~----~~l~~y~~--h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITV----GEDCTCRVWGVNG----TQLEVYDE--HSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eeEEEEeccc--eeEEe----ccceEEEEEeccc----ceehhhhh--hhhcceeEEEEcC-CceEEEeeccCcchhhhh
Confidence 9999999998 89999 9999999997773 23334444 3456699999998 888999999999999999
Q ss_pred cCCC
Q 009203 356 ERDA 359 (540)
Q Consensus 356 ~~~~ 359 (540)
+...
T Consensus 287 l~~r 290 (967)
T KOG0974|consen 287 LNGR 290 (967)
T ss_pred hhcc
Confidence 8754
No 252
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=3.8e-10 Score=122.34 Aligned_cols=269 Identities=13% Similarity=0.157 Sum_probs=164.2
Q ss_pred EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc-cC-----CCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD-CL-----SPKHRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~-~~-----~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
..++++++++.++++-+.++.|++||... .....+..... .. ...+......+++.++++.|+++ +..++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa---Dt~n~ 646 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA---DTENH 646 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE---eCCCc
Confidence 46888876677888888899999999864 32222211000 00 01123446889999998876665 25678
Q ss_pred eEEEEecCCCCCceeEEeecCCCC--------------cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPH--------------VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK 366 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 366 (540)
.|+++|+.++ .+..+.+.+. .-....+++|+|.++.++++.+.++.|++||..++.. .
T Consensus 647 ~Ir~id~~~~----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v----~ 718 (1057)
T PLN02919 647 ALREIDFVNE----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT----R 718 (1057)
T ss_pred eEEEEecCCC----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE----E
Confidence 8999998764 1333221100 0123568999995666777778889999999987642 1
Q ss_pred eeecc-------------cCCcceeEEEeccCCCE-EEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceE
Q 009203 367 ALHRN-------------LHSSAVMGVAGMQQKQI-VLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 367 ~~~~~-------------~~~~~v~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (540)
.+... ........++++|+|+. +++.+.++.|++||+.++....... -.+..
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g---------g~~~~----- 784 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG---------GDPTF----- 784 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe---------ccccc-----
Confidence 11100 01234567899999884 4455567899999988664311000 00000
Q ss_pred EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc----
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---- 508 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---- 508 (540)
.+....+++...... ...-....+++++++|.++++-..++.|++||..+ +... ++.
T Consensus 785 -----~~~l~~fG~~dG~g~-----------~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t--g~v~-tiaG~G~ 845 (1057)
T PLN02919 785 -----SDNLFKFGDHDGVGS-----------EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT--KRVT-TLAGTGK 845 (1057)
T ss_pred -----CcccccccCCCCchh-----------hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC--CeEE-EEeccCC
Confidence 000001111100000 00112346889999999989989999999999985 2222 111
Q ss_pred ----------ccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 509 ----------AHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 509 ----------~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+.-.....|+++++|+++++.+.++.|++||+
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 12235788999999999999999999999985
No 253
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3e-10 Score=106.78 Aligned_cols=294 Identities=13% Similarity=0.160 Sum_probs=181.6
Q ss_pred eEEEeccc---hhcc-cccCceEEEEEecCCCcEEEEEeCC-----------ceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 209 TIHCHTSN---HVSS-LHKRKLRSLSLNPVNEQLFVTSALD-----------GVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 209 ~i~~~~~~---~~~~-~h~~~V~~l~~spd~~~~l~tg~~d-----------g~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
-|.+|-|. ++-+ .| -.|.-+.||| +.++|+|-+.. ..+.|||+.+|.....+..... .
T Consensus 232 GI~lWGG~~f~r~~RF~H-p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~-----~ 304 (698)
T KOG2314|consen 232 GIALWGGESFDRIQRFYH-PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS-----P 304 (698)
T ss_pred ceeeecCccHHHHHhccC-CCceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC-----C
Confidence 45667555 2222 33 4589999999 69999996532 4689999999987776654211 1
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD----- 348 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----- 348 (540)
...-.-..||.|++++|-- . ...|.||+..+ +..+..+.-.-..|....|+| .+++||.=+..
T Consensus 305 ~~~WP~frWS~DdKy~Arm----~-~~sisIyEtps------f~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~p 372 (698)
T KOG2314|consen 305 YLKWPIFRWSHDDKYFARM----T-GNSISIYETPS------FMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIP 372 (698)
T ss_pred ccccceEEeccCCceeEEe----c-cceEEEEecCc------eeeecccccCCccccCcccCC-CcceEEEEcccccCCc
Confidence 1111247899999999986 3 36799998764 333443333334588999999 77777653321
Q ss_pred CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe----------CCCeEEEEECCCCCe-eeeeccCcc
Q 009203 349 HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG----------ADKRIIGFDAGVGRA-DFKHQIESK 417 (540)
Q Consensus 349 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~-~~~~~~~~~ 417 (540)
..+.+..+.+++.+... ..+.-.=..+.|-.+|.+|+.-- .-..+-|+.++.... +........
T Consensus 373 arvtL~evPs~~~iRt~-----nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 373 ARVTLMEVPSKREIRTK-----NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ceEEEEecCccceeeec-----cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 23555555554431111 11222223466777788776521 112356666665433 445667788
Q ss_pred EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE---eCCCcEEEE
Q 009203 418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG---SADPVIHLF 494 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg---~~dg~i~iw 494 (540)
+..++|.|.+.....|..-....++.+|.+.+...... +...+.. ...+.+.|+|.|++++.+ |..|.+.++
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~---lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS---LVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh---hhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEE
Confidence 99999999885422222223456799998884221111 1112221 346789999999998866 457899999
Q ss_pred eccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 495 DIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 495 d~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
|+...+.+.+ ....|. ..+.+.|.|.|+|+++++.-.
T Consensus 523 D~~~a~~k~~-~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 523 DTDYADLKDT-ASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ecchhhhhhc-cCcccc-ccccceECCCCCEEEEeeehh
Confidence 9985212222 222344 468899999999999997543
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=2.2e-11 Score=122.62 Aligned_cols=274 Identities=12% Similarity=0.103 Sum_probs=185.1
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
-+++++.++-. .+|+.|. -..|.+||+..+..+..+....-. ..|...=.-. -.+.+++.+ ..-+.+
T Consensus 7 ~~~l~~~~~~~---~~llag~-gp~i~~yd~~s~~li~~~~~~~~~--~~H~~e~~~~---l~~~~~v~~----~~~~~v 73 (967)
T KOG0974|consen 7 LGPLNLPQLVS---DYLLAGS-GPEILVYDLSSGCLIRHLIQSKIL--EVHRGEGKVK---LLSGKIVTC----AKSDEV 73 (967)
T ss_pred cccccchhhcc---ceeeecC-CCceEEeeCCchhHhhhhhhhccc--ccccccccce---eccceEEEE----Eeecce
Confidence 34566666653 3555554 346999999988776655432211 2330000000 112344444 222222
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce-----
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV----- 377 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v----- 377 (540)
..=+... .....+ .+.+....+.- +...++.+..+..+.+||...+....+.+ +...+
T Consensus 74 ~~~~~~~----~~~~~~------s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~------~~er~~l~~~ 136 (967)
T KOG0974|consen 74 YVKEASN----QIIERF------SDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQ------SDERCTLYSS 136 (967)
T ss_pred eecchhh----hhhhhc------cccccccchhh-hcceEEEEEcCceEEEEecccCceehhcC------CCceEEEEeE
Confidence 2222111 011111 23344444444 67788888889999999998775422111 22211
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
.-+.++++.-++++|+.-+.|.+|+... ..+.....+++.+.++.++-++ .++++.++|.++++|++.+.+...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg---~~i~s~SdDRsiRlW~i~s~~~~~-- 211 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG---RYIASVSDDRSIRLWPIDSREVLG-- 211 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCC---cEEEEEecCcceeeeecccccccC--
Confidence 2223466677899999999999999874 2334456778899999998887 799999999999999999887544
Q ss_pred eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc-ceeEEEEcCCCCEEEEEEcCCcE
Q 009203 457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK-RVFKAVWHYSHPLLISISSDLNI 535 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~i~~l~~s~~~~~l~s~~~dg~v 535 (540)
...-+|...|+.+.|+|+ .+++++.|-+.++|+.+ +..+..+.+|.+ .|+.++..++...++|++.||.+
T Consensus 212 ----~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~---~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 212 ----CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN---GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ----cccccccceeEEEEeccc--eeEEeccceEEEEEecc---cceehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 133479999999999998 99999999999999877 566778888864 79999999999999999999999
Q ss_pred EEEeC
Q 009203 536 GLHKI 540 (540)
Q Consensus 536 ~iw~l 540 (540)
++|++
T Consensus 283 k~~~l 287 (967)
T KOG0974|consen 283 KLWDL 287 (967)
T ss_pred hhhhh
Confidence 99985
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=2.6e-10 Score=106.28 Aligned_cols=281 Identities=14% Similarity=0.087 Sum_probs=184.2
Q ss_pred CceEEEEEecCCCcEEEEEeCCc---------------eEEEEEcCCCCCcceeecccccCCCCCCCCce-eEEEecCCC
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDG---------------VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE-DIAWHPQGN 287 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg---------------~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~~~~ 287 (540)
..|.-+.|+| ++.+|.+-+..+ .+.+||+.++..+..+..... ..-.+ -+.|+-+.+
T Consensus 72 ~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q------~~~~Wp~~k~s~~D~ 144 (561)
T COG5354 72 PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ------PYLGWPVLKFSIDDK 144 (561)
T ss_pred CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCC------cccccceeeeeecch
Confidence 5699999999 599999976443 499999999887666643221 11123 578888888
Q ss_pred eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-CCCEEEE-----EecCCcEEEEecCCCCC
Q 009203 288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFAT-----GGSDHAVVLWSERDAED 361 (540)
Q Consensus 288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s-----~~~dg~i~iwd~~~~~~ 361 (540)
++|-. ....+.|+++...-.......+. ...|....|+|. ++..|+. .+.++.+++|.+..+..
T Consensus 145 y~ARv-----v~~sl~i~e~t~n~~~~p~~~lr-----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 145 YVARV-----VGSSLYIHEITDNIEEHPFKNLR-----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred hhhhh-----ccCeEEEEecCCccccCchhhcc-----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 77664 45679999973221111222222 234888899984 3333443 35678899999986553
Q ss_pred ccccceeecccCCcceeEEEeccCCCEEEEEe-----------CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203 362 SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-----------ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (540)
+... .+ ....-..+.|.+.|+++++-. ....++++++....+.......+.+..++|.|.+..
T Consensus 215 l~tk-~l----fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~- 288 (561)
T COG5354 215 LVTK-NL----FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSR- 288 (561)
T ss_pred eeee-ee----EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCc-
Confidence 1111 11 122234678888888776521 124688888885444333366789999999997743
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCcccccc
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~ 507 (540)
.-+++|..+-.+.++|++.. ....+ -...=..+.|||.+++++.++-| |.|-+||.... ..++..+
T Consensus 289 F~vi~g~~pa~~s~~~lr~N--l~~~~--------Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-f~~~~~~ 357 (561)
T COG5354 289 FAVISGYMPASVSVFDLRGN--LRFYF--------PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-FKVAGAF 357 (561)
T ss_pred eeEEecccccceeecccccc--eEEec--------CCcccccccccCcccEEEEecCCccccceEEeccCCc-eEEEEEe
Confidence 45667788899999999865 22211 12334567899999999987765 78999999852 3333344
Q ss_pred cccccceeEEEEcCCCCEEEEEE------cCCcEEEEeC
Q 009203 508 RAHQKRVFKAVWHYSHPLLISIS------SDLNIGLHKI 540 (540)
Q Consensus 508 ~~h~~~i~~l~~s~~~~~l~s~~------~dg~v~iw~l 540 (540)
.+.. -.-+.|+|||+++.+.. .|..|.||++
T Consensus 358 ~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 358 NGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 4332 45568999999877653 5778999986
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=4.4e-12 Score=122.63 Aligned_cols=288 Identities=18% Similarity=0.236 Sum_probs=189.0
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC---eEEEEeecCCCCC
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN---SLFSAHTADSGDS 300 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~---~l~s~~~~~~~d~ 300 (540)
+++.++..+| .|+-+|.++.-| +.+-|+...-.......+... -.|-.+.|+|... .+++ ....
T Consensus 25 ~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp------w~vad~qws~h~a~~~wiVs-----ts~q 91 (1081)
T KOG0309|consen 25 GGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP------WQVADVQWSPHPAKPYWIVS-----TSNQ 91 (1081)
T ss_pred Ccccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCc------chhcceecccCCCCceeEEe-----cCcc
Confidence 6789999999 588888888776 566677665444444333221 2256678877533 4454 4566
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
.-.+|++.........-.+.+ |...|+.+.|+|+....+++++.|-.+..||++.... ..............+
T Consensus 92 kaiiwnlA~ss~~aIef~lhg---hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~----p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSNAIEFVLHG---HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR----PFYSTSSWRSAASQV 164 (1081)
T ss_pred hhhhhhhhcCCccceEEEEec---CccceeccccCCCCCcceeeccccccceeeeccCCCc----ceeeeecccccCcee
Confidence 677899876544333333443 6677999999999999999999999999999998763 222223344556788
Q ss_pred EeccCCCEEEEEeCCCeEEEEECCCCCeee-eec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203 381 AGMQQKQIVLSAGADKRIIGFDAGVGRADF-KHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 458 (540)
+|+-....+++.+....|++||++.|.... ... .-..+..+.|+..-. ..+.+.+.|++|++||.........
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--s~~~s~~~d~tvkfw~y~kSt~e~~--- 239 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--SEIMSSSNDGTVKFWDYSKSTTESK--- 239 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh--hhhcccCCCCceeeecccccccccc---
Confidence 998765556666677789999999876533 222 223344555554322 3678899999999999975443221
Q ss_pred cccccCccccCeEEEEEcCCCC--EEEEEeCCCcEEEE---------eccCCCCcccccccccccceeEEEEcC------
Q 009203 459 WKQESSESQSALINQSWSPDGL--YITSGSADPVIHLF---------DIRYSANKPSQSIRAHQKRVFKAVWHY------ 521 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~--~l~sg~~dg~i~iw---------d~~~~~~~~~~~~~~h~~~i~~l~~s~------ 521 (540)
.......+|+.-.|-|-|. ++.---.+..+.++ +..+. .+++.+|.||.+.|....|-.
T Consensus 240 ---~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~GH~D~V~eFlWR~r~e~~~ 315 (1081)
T KOG0309|consen 240 ---RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFVGHDDVVLEFLWRKRKECDG 315 (1081)
T ss_pred ---eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC-CcceeeecCcchHHHHHhhhhcccccC
Confidence 1112344666667777443 22211122244444 33333 568999999999998877743
Q ss_pred --CC--CEEEEEEcCCcEEEEeC
Q 009203 522 --SH--PLLISISSDLNIGLHKI 540 (540)
Q Consensus 522 --~~--~~l~s~~~dg~v~iw~l 540 (540)
|. -.|+|-+.|..+++|.|
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred CCCccceeEEEeecCCceEeeec
Confidence 22 26999999999999975
No 257
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2.1e-12 Score=120.88 Aligned_cols=293 Identities=15% Similarity=0.160 Sum_probs=185.7
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-cceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
+.||+..|..++--. +.+-+++++.|.+|++|.+..... ..+-... .....|+.+|.++.|-.+-++++++
T Consensus 731 f~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQ--fTY~aHkk~i~~igfL~~lr~i~Sc----- 802 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQ--FTYQAHKKPIHDIGFLADLRSIASC----- 802 (1034)
T ss_pred ccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceee--eEhhhccCcccceeeeeccceeeec-----
Confidence 689999999988664 577899999999999999865332 1111111 1115899999999999998888886
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-CCCEEEE-EecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFAT-GGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
||.|.+||.--+. .+..+...+.+ +.+..+...+. +..+++. ++...+|+++|.+..+.....+.....+...
T Consensus 803 -D~giHlWDPFigr---~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGR---LLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA 877 (1034)
T ss_pred -cCcceeecccccc---hhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence 8999999987652 23222222222 22334443342 3334444 4778999999999987655555554455667
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEE-EECCCCcce
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRL-YDIRLRQTE 453 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i-~d~~~~~~~ 453 (540)
.+.+++..+.|+.++.+-.+|+|.+.|.++|+.+..... +-....++ .|.+ +.++....|.++.+ |-.-++...
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsd---q~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSD---QALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-Cchh---HHHHhhcccceeEeeehhcCCeee
Confidence 899999999999999999999999999999987654322 22222222 2333 46777777788877 766544322
Q ss_pred eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC--CCccccccc--ccccceeEEEEcCCCCEEEEE
Q 009203 454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS--ANKPSQSIR--AHQKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~--~h~~~i~~l~~s~~~~~l~s~ 529 (540)
.... .-..+..- .-.-|.-|+++.....+.+|.-... ....+..++ ...+..++++--|-..-+..|
T Consensus 954 ~q~k-------pppepahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaG 1024 (1034)
T KOG4190|consen 954 LQDK-------PPPEPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAG 1024 (1034)
T ss_pred eccC-------CCCcchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhcc
Confidence 2110 00001000 1113556777766666777743210 001111221 234567888888877777888
Q ss_pred EcCCcEEE
Q 009203 530 SSDLNIGL 537 (540)
Q Consensus 530 ~~dg~v~i 537 (540)
...|.|.+
T Consensus 1025 ne~G~IaL 1032 (1034)
T KOG4190|consen 1025 NEHGAIAL 1032 (1034)
T ss_pred CCCCceee
Confidence 88888875
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=2.5e-10 Score=113.73 Aligned_cols=206 Identities=11% Similarity=0.024 Sum_probs=132.6
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC---CcEEEEecCCCCCccccceeecccCCc
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD---HAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
...|.++|..... ...... +...+...+|+| ++++|+.+..+ ..|++||+.++.. ..+. .+.+
T Consensus 169 ~~~l~~~d~~g~~---~~~l~~----~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~----~~~~--~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGAN---PQTITR----SREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQR----EKVA--SFPG 234 (417)
T ss_pred cceEEEEcCCCCC---CEEeec----CCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCE----EEee--cCCC
Confidence 4468888876432 122222 234588899999 99998887654 4799999988753 2222 2445
Q ss_pred ceeEEEeccCCCEEEEE-eCCC--eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc-CCC--eEEEEECCC
Q 009203 376 AVMGVAGMQQKQIVLSA-GADK--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT-PGR--QLRLYDIRL 449 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~v~i~d~~~ 449 (540)
.+.+++|+|||+.|+.. +.++ .|++||+.++................|+|++ ..|+..+ .++ .|+++|+.+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg---~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDG---KSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCC---CEEEEEECCCCCceEEEEECCC
Confidence 56778999999877654 4444 5999999877654333333333456788876 4554443 333 578888876
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC---cEEEEeccCCCCcccccccccccceeEEEEcCCCCEE
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP---VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL 526 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l 526 (540)
+..... ..+...+..+.|+|+|++|+.++.++ .|.+||+.+. . ...+... .......|+|||++|
T Consensus 312 ~~~~~l--------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~--~-~~~l~~~-~~~~~p~~spdg~~l 379 (417)
T TIGR02800 312 GEVRRL--------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG--G-ERVLTDT-GLDESPSFAPNGRMI 379 (417)
T ss_pred CCEEEe--------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC--C-eEEccCC-CCCCCceECCCCCEE
Confidence 543211 12334567789999999999887765 7888888762 2 2222222 224556899999988
Q ss_pred EEEEcCC
Q 009203 527 ISISSDL 533 (540)
Q Consensus 527 ~s~~~dg 533 (540)
+.++.++
T Consensus 380 ~~~~~~~ 386 (417)
T TIGR02800 380 LYATTRG 386 (417)
T ss_pred EEEEeCC
Confidence 8777654
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.7e-08 Score=90.90 Aligned_cols=285 Identities=10% Similarity=0.097 Sum_probs=183.3
Q ss_pred cccccCceEEEEEecCCCcEEEEEeC---CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSAL---DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
+-.+.+..+-|+|+|+ +++|.++.. +|.|.-|.++...-..++...... .+ .+.+.++++++|++++++.
T Consensus 35 ~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~--~g--~~p~yvsvd~~g~~vf~An-- 107 (346)
T COG2706 35 LVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL--PG--SPPCYVSVDEDGRFVFVAN-- 107 (346)
T ss_pred hccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc--CC--CCCeEEEECCCCCEEEEEE--
Confidence 3467788999999995 877877754 577888888754222333322211 12 2337899999999999983
Q ss_pred CCCCCeEEEEecCCC-CCceeEEeecCCC--Cc----ccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccce
Q 009203 296 DSGDSQISVLNLNKT-KGRACVTFLDDKP--HV----KGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKA 367 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~-~~~~~~~~~~~~~--~~----~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~ 367 (540)
-..|.|.++-++.. .-...+..+...+ .| ...+....|.| ++++|++... --.|.+|++..+........
T Consensus 108 -Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 108 -YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred -ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccc
Confidence 56789999988653 2222222222100 01 12278899999 9999888753 23599999997764222222
Q ss_pred eecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCC--Ce--eee-------eccCccEEEEeecCCCCCceEEEE
Q 009203 368 LHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVG--RA--DFK-------HQIESKCMSVLPNPCDFNLFMVQT 435 (540)
Q Consensus 368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~--~~--~~~-------~~~~~~~~~~~~~~~~~~~~~l~~ 435 (540)
.. ........|.|+|++++.++.++ +++|-+|..... +. +.. +.......++..++++ ++|.+
T Consensus 186 ~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG---rFLYa 260 (346)
T COG2706 186 EV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG---RFLYA 260 (346)
T ss_pred cc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC---CEEEE
Confidence 21 24566789999999999888776 889999998863 22 111 3335667788889988 56665
Q ss_pred Ec-CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-CcEEEEeccCCCCccccccc-cccc
Q 009203 436 GT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-PVIHLFDIRYSANKPSQSIR-AHQK 512 (540)
Q Consensus 436 ~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-g~i~iwd~~~~~~~~~~~~~-~h~~ 512 (540)
+. ....|.+|.+......+...+ ....+......+.|++.|++|+++..+ ..|.+|.++...+++..... ....
T Consensus 261 sNRg~dsI~~f~V~~~~g~L~~~~---~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p 337 (346)
T COG2706 261 SNRGHDSIAVFSVDPDGGKLELVG---ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVP 337 (346)
T ss_pred ecCCCCeEEEEEEcCCCCEEEEEE---EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCC
Confidence 53 335788888876544333332 222344457889999999999988764 56999998865454333222 2333
Q ss_pred ceeEEEEc
Q 009203 513 RVFKAVWH 520 (540)
Q Consensus 513 ~i~~l~~s 520 (540)
...||.|.
T Consensus 338 ~Pvcv~f~ 345 (346)
T COG2706 338 EPVCVKFL 345 (346)
T ss_pred CcEEEEEc
Confidence 45666663
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.1e-09 Score=103.47 Aligned_cols=279 Identities=13% Similarity=0.183 Sum_probs=184.0
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee-----cC-
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT-----AD- 296 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-----~~- 296 (540)
..+++..++++ +|+++|.+. +..|+|++......+.+... ..+.++.|+|.|.+|.+--. ++
T Consensus 34 ~~~~~v~~~S~-~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~----------~~~~~L~fSP~g~yL~T~e~~~i~~~~~ 101 (566)
T KOG2315|consen 34 SRPCNVFAYSN-NGRLFAYSD-NQVVKVFEIATLKVVLCVEL----------KKTYDLLFSPKGNYLLTWEPWAIYGPKN 101 (566)
T ss_pred CCcceeEEEcC-CCcEEEEEc-CCeEEEEEccCCcEEEEecc----------ceeeeeeecccccccccccccccccCCC
Confidence 34577888998 588877765 56899999988763332211 14789999999998887400 00
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
.....+.+|++.++. ....+... ... -++..|++ |..+.+- -..+.+++|++.... .....-|...
T Consensus 102 ~~~pn~~v~~vet~~---~~s~~q~k--~Q~-~W~~qfs~-dEsl~ar-lv~nev~f~~~~~f~------~~~~kl~~~~ 167 (566)
T KOG2315|consen 102 ASNPNVLVYNVETGV---QRSQIQKK--MQN-GWVPQFSI-DESLAAR-LVSNEVQFYDLGSFK------TIQHKLSVSG 167 (566)
T ss_pred CCCCceeeeeeccce---ehhheehh--hhc-Cccccccc-chhhhhh-hhcceEEEEecCCcc------ceeeeeeccc
Confidence 123568899999852 22222221 122 26889998 5544332 234679999998743 2333347888
Q ss_pred eeEEEeccCC--CEEEE-----EeCCCeEEEEECCCCCeee----eeccCccEEEEeecCCCCCceEEEEEcCCC-----
Q 009203 377 VMGVAGMQQK--QIVLS-----AGADKRIIGFDAGVGRADF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGR----- 440 (540)
Q Consensus 377 v~~l~~s~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----- 440 (540)
|+.+.++|.+ ..+++ .+.-+.|+||......... ..-....-..+.|++-+....+|++..-|.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SY 247 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASY 247 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccc
Confidence 9999999863 33333 3445679999886322211 122234556788888776655555554443
Q ss_pred ----eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEeccCCCCcccccccccccce
Q 009203 441 ----QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS--GSADPVIHLFDIRYSANKPSQSIRAHQKRV 514 (540)
Q Consensus 441 ----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~h~~~i 514 (540)
+++++++....+.+.. ...++|.++.|+|+|+-+++ |-.--.+.|||++ +.++..+. .++=
T Consensus 248 YGEq~Lyll~t~g~s~~V~L--------~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr---~~~v~df~--egpR 314 (566)
T KOG2315|consen 248 YGEQTLYLLATQGESVSVPL--------LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR---GKPVFDFP--EGPR 314 (566)
T ss_pred cccceEEEEEecCceEEEec--------CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC---CCEeEeCC--CCCc
Confidence 5777777733332221 23679999999999987654 5567889999999 67776664 5677
Q ss_pred eEEEEcCCCCEEEEEEcC---CcEEEEeC
Q 009203 515 FKAVWHYSHPLLISISSD---LNIGLHKI 540 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~d---g~v~iw~l 540 (540)
+++.|+|.|++|+.+|-+ |.|-|||+
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEec
Confidence 899999999998888754 88999995
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=130.90 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=158.4
Q ss_pred CCeEEEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe
Q 009203 207 PATIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH 283 (540)
Q Consensus 207 d~~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 283 (540)
+.+..-|++. ..++.|-..|.++.=+| ...+.+||+.||.|++|....++.+..+.. .|. ..|+.+.|+
T Consensus 2189 ~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt------~g~-s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASVMIKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRT------AGN-SRVTRSRFN 2260 (2439)
T ss_pred CccccceecccceeEeecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeec------cCc-chhhhhhhc
Confidence 3344445443 44677778899999999 488999999999999999988876655543 233 789999999
Q ss_pred cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe---cCCcEEEEecCCCC
Q 009203 284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG---SDHAVVLWSERDAE 360 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~ 360 (540)
..|+.+..+ ..||.+.+|.... +.+...+. |......+.|-. ..+++++ .++.+.+||.--..
T Consensus 2261 ~qGnk~~i~----d~dg~l~l~q~~p----k~~~s~qc---hnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2261 HQGNKFGIV----DGDGDLSLWQASP----KPYTSWQC---HNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred ccCCceeee----ccCCceeecccCC----cceecccc---CCccccceeeee---hhhhccccCCCCCcccchhcccCc
Confidence 999999998 9999999999882 23333332 455577778853 5677664 46889999987655
Q ss_pred CccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203 361 DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR 440 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 440 (540)
..+-+. ..|.+.++++++-|..++|++|+.+|.|++||++..+.+..++. ++.. .++++|+..|
T Consensus 2327 ~~s~v~----~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~~~----~~f~~~ss~g 2390 (2439)
T KOG1064|consen 2327 MNSLVH----TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LDTR----EYFVTGSSEG 2390 (2439)
T ss_pred ccceee----eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hhhh----heeeccCccc
Confidence 322222 56999999999999999999999999999999998776555443 2211 4899999999
Q ss_pred eEEEEECCCCc
Q 009203 441 QLRLYDIRLRQ 451 (540)
Q Consensus 441 ~v~i~d~~~~~ 451 (540)
.++||++....
T Consensus 2391 ~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2391 NIKIWRLSEFG 2401 (2439)
T ss_pred ceEEEEccccc
Confidence 99999998764
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.5e-09 Score=108.31 Aligned_cols=223 Identities=13% Similarity=0.111 Sum_probs=133.5
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT 294 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~ 294 (540)
.+..|...+...+|+|| |+.|+..+.+ ..|.+|++.+++.. .+ . ...+.+...+|+|||+.|+....
T Consensus 193 ~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~-~l-~-------~~~g~~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 193 TLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRRE-QI-T-------NFEGLNGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred EEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEE-Ec-c-------CCCCCcCCeEECCCCCEEEEEEc
Confidence 35567788999999997 7777665533 36888999876532 11 1 11223457899999998875421
Q ss_pred cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CC--cEEEEecCCCCCccccceeecc
Q 009203 295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DH--AVVLWSERDAEDSWKPKALHRN 371 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~ 371 (540)
. ..+..|.+||+.++.. ..+.. +........|+| +++.|+..+. +| .|+++|+.+++. ..+...
T Consensus 263 ~-~g~~~Iy~~d~~~~~~----~~lt~---~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~~ 329 (430)
T PRK00178 263 K-DGNPEIYVMDLASRQL----SRVTN---HPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTFV 329 (430)
T ss_pred c-CCCceEEEEECCCCCe----EEccc---CCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCE----EEeecC
Confidence 1 2234688889987532 22222 233456788999 8887766553 33 577778877652 223221
Q ss_pred cCCcceeEEEeccCCCEEEEEeCC-C--eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc-CCC--eEEEE
Q 009203 372 LHSSAVMGVAGMQQKQIVLSAGAD-K--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT-PGR--QLRLY 445 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~v~i~ 445 (540)
........|+|+|+.|+..+.+ + .|.+||+.++....... ........|+|++ .+++..+ .++ .+.++
T Consensus 330 --~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg---~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 330 --GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNG---TMLIYATRQQGRGVLMLV 403 (430)
T ss_pred --CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCC---CEEEEEEecCCceEEEEE
Confidence 2233457899999999887653 2 58899998876533322 1222345788877 3444433 333 46666
Q ss_pred ECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 446 DIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 446 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
++..... . .+..+.+.+...+|+|
T Consensus 404 ~~~g~~~--~------~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 404 SINGRVR--L------PLPTAQGEVREPSWSP 427 (430)
T ss_pred ECCCCce--E------ECcCCCCCcCCCccCC
Confidence 7653322 1 1122334456667776
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=6.5e-10 Score=105.69 Aligned_cols=193 Identities=18% Similarity=0.215 Sum_probs=147.3
Q ss_pred cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe------C-------------CCCCEEEE
Q 009203 284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL------P-------------WENPCFAT 344 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------p-------------~~~~~l~s 344 (540)
|...++|.. ..||.+++||...++. .+.+....+..+...+..|. | .+...++-
T Consensus 3 ~~~~~~A~~----~~~g~l~iw~t~~~~~---~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 3 PALDYFALS----TGDGRLRIWDTAKNQL---QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred chhheEeec----CCCCeEEEEEccCcee---eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 445688888 9999999999988732 33333222334455555552 1 14456888
Q ss_pred EecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEee
Q 009203 345 GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLP 423 (540)
Q Consensus 345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 423 (540)
|...|.|.+|++..++.. ..+....|.+.|.++.++.+-..|.+++.|+.+..|+...+..+..... ...+.+++.
T Consensus 76 gt~~g~v~~ys~~~g~it---~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEIT---AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred ecCCccEEEEEecCCeEE---EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence 889999999999999863 3344467999999999999999999999999999999998888776554 456778899
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC-----CCEEEEE-eCCCcEEEEecc
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-----GLYITSG-SADPVIHLFDIR 497 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~sg-~~dg~i~iwd~~ 497 (540)
+|++ ..+++++ +.|++||+.+.+... .+.+|.++|.+++|-.+ |.++.++ ..+..+.+|-+.
T Consensus 153 s~D~---~~l~~as--~~ik~~~~~~kevv~-------~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 153 SPDG---KILLTAS--RQIKVLDIETKEVVI-------TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cCCC---CEEEecc--ceEEEEEccCceEEE-------EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9986 5777775 689999999988654 56899999999999876 6666654 456668888877
Q ss_pred C
Q 009203 498 Y 498 (540)
Q Consensus 498 ~ 498 (540)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.2e-09 Score=107.66 Aligned_cols=233 Identities=12% Similarity=0.025 Sum_probs=133.5
Q ss_pred cccccCceEEEEEecCCCc--EEEEEeCCc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203 219 SSLHKRKLRSLSLNPVNEQ--LFVTSALDG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT 294 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~--~l~tg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~ 294 (540)
+......+.+-+|+||+.. ++++...+| .|.+.++..++. ..+ . ...+.....+|+|||+.|+....
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~l-t-------~~~g~~~~p~wSPDG~~Laf~s~ 250 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKI-L-------ALQGNQLMPTFSPRKKLLAFISD 250 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEe-e-------cCCCCccceEECCCCCEEEEEEC
Confidence 4444556778899997333 233444444 466667776542 222 1 11223456899999998887621
Q ss_pred c-CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEE--ecCCCCCccccceeec
Q 009203 295 A-DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLW--SERDAEDSWKPKALHR 370 (540)
Q Consensus 295 ~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~ 370 (540)
. |..+-.+.+|++..+........... ..+.....+|+| ||+.|+..+ .+|...+| ++..... ....+.
T Consensus 251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~---~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt- 323 (428)
T PRK01029 251 RYGNPDLFIQSFSLETGAIGKPRRLLNE---AFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLT- 323 (428)
T ss_pred CCCCcceeEEEeecccCCCCcceEeecC---CCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECccccc--ceEEec-
Confidence 1 11233445577765321122233322 113346789999 988777665 45655555 4432111 022222
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCC---CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE-EEcC--CCeEEE
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGAD---KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ-TGTP--GRQLRL 444 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~--dg~v~i 444 (540)
.+...+....|+|||+.|+..+.+ ..|.+||+.+++...............|+|++ ..|+ +... ...|.+
T Consensus 324 -~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG---~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 324 -KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDS---LHLVYSAGNSNESELYL 399 (428)
T ss_pred -cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCC---CEEEEEECCCCCceEEE
Confidence 233566788999999998876653 36999999988765443333455678899987 3443 3332 356888
Q ss_pred EECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203 445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG 479 (540)
Q Consensus 445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 479 (540)
+|+.++..... ....+.+...+|+|-.
T Consensus 400 vdl~~g~~~~L--------t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 400 ISLITKKTRKI--------VIGSGEKRFPSWGAFP 426 (428)
T ss_pred EECCCCCEEEe--------ecCCCcccCceecCCC
Confidence 89887653221 1123345567787743
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=3.8e-09 Score=104.15 Aligned_cols=223 Identities=14% Similarity=0.095 Sum_probs=129.6
Q ss_pred CCceeEEEecCCCeEE---EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CC-
Q 009203 275 RWPEDIAWHPQGNSLF---SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DH- 349 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~---s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg- 349 (540)
..+.+-+|+|||+.++ +.+. .....|.+.++.++.. ..+..+. +.....+|+| ||+.|+..+. +|
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~--~g~~~I~~~~l~~g~~-~~lt~~~------g~~~~p~wSP-DG~~Laf~s~~~g~ 254 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYK--LGVPKIFLGSLENPAG-KKILALQ------GNQLMPTFSP-RKKLLAFISDRYGN 254 (428)
T ss_pred CCcccceEccCCCceEEEEEEcc--CCCceEEEEECCCCCc-eEeecCC------CCccceEECC-CCCEEEEEECCCCC
Confidence 4456789999998533 3311 2235688888887643 3333332 3355689999 9988876553 22
Q ss_pred ---cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCe--EEEEECCC--CCeeeeeccCccEEEE
Q 009203 350 ---AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKR--IIGFDAGV--GRADFKHQIESKCMSV 421 (540)
Q Consensus 350 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~--i~iwd~~~--~~~~~~~~~~~~~~~~ 421 (540)
.+.+|++..+... ....+.. .........+|+|||+.|+..+ .+|. |+++++.. +...............
T Consensus 255 ~di~~~~~~~~~g~~g-~~~~lt~-~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIG-KPRRLLN-EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCC-cceEeec-CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 3444777653210 0122221 1223446789999999887765 4564 44445542 2222222223345677
Q ss_pred eecCCCCCceEEEEEcC-C--CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEe
Q 009203 422 LPNPCDFNLFMVQTGTP-G--RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA---DPVIHLFD 495 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~---dg~i~iwd 495 (540)
.|+|++ ..|+..+. + ..|.+||+.+++.... ......+....|+|||++|+..+. ...|++||
T Consensus 333 ~wSPDG---~~Laf~~~~~g~~~I~v~dl~~g~~~~L--------t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 333 AWSPDG---KKIAFCSVIKGVRQICVYDLATGRDYQL--------TTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred eECCCC---CEEEEEEcCCCCcEEEEEECCCCCeEEc--------cCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 899988 45554433 2 4699999987764321 111234567899999998875433 35688888
Q ss_pred ccCCCCcccccccccccceeEEEEcCCC
Q 009203 496 IRYSANKPSQSIRAHQKRVFKAVWHYSH 523 (540)
Q Consensus 496 ~~~~~~~~~~~~~~h~~~i~~l~~s~~~ 523 (540)
+.. ++ ...+....+.+...+|+|-.
T Consensus 402 l~~--g~-~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 402 LIT--KK-TRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCC--CC-EEEeecCCCcccCceecCCC
Confidence 875 33 22333344556778888754
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.8e-09 Score=107.38 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=130.7
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeC-Cc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSAL-DG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH 293 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~ 293 (540)
+.+..+...+.+..|+|| |+.|+..+. ++ .|.+||+.+++.. .+ .. ........+|+|||+.|+...
T Consensus 211 ~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~-~l-t~-------~~g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVRE-KV-TS-------FPGINGAPRFSPDGKKLALVL 280 (448)
T ss_pred eEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeE-Ee-cC-------CCCCcCCeeECCCCCEEEEEE
Confidence 345566778899999997 776666543 33 5788888776531 11 11 112234689999999887642
Q ss_pred ecCCCCC--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CC--cEEEEecCCCCCcccccee
Q 009203 294 TADSGDS--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DH--AVVLWSERDAEDSWKPKAL 368 (540)
Q Consensus 294 ~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~ 368 (540)
+.++ .|.+||+.++. ...+.. +.......+|+| +++.|+..+. ++ .|+++|+.+++. ..+
T Consensus 281 ---~~~g~~~Iy~~dl~tg~----~~~lt~---~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~L 345 (448)
T PRK04792 281 ---SKDGQPEIYVVDIATKA----LTRITR---HRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKV----SRL 345 (448)
T ss_pred ---eCCCCeEEEEEECCCCC----eEECcc---CCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE----EEE
Confidence 4445 47778887652 222222 233467789999 8887766553 33 466777777652 333
Q ss_pred ecccCCcceeEEEeccCCCEEEEEeCC-C--eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe--EE
Q 009203 369 HRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ--LR 443 (540)
Q Consensus 369 ~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--v~ 443 (540)
.. ........+|+|||++|+..+.+ + .|.++|+.++....... ........|+|++. .++++...++. +.
T Consensus 346 t~--~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-~~~d~~ps~spdG~--~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 346 TF--EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-TRLDESPSVAPNGT--MVIYSTTYQGKQVLA 420 (448)
T ss_pred ec--CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-CCCCCCceECCCCC--EEEEEEecCCceEEE
Confidence 22 22223457899999998876653 3 46678888776533221 11222446888873 23333334443 66
Q ss_pred EEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
+++..... .. .+..+.+.+...+|+|
T Consensus 421 ~~~~~G~~-~~-------~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSIDGRF-KA-------RLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEECCCCc-eE-------ECcCCCCCcCCCccCC
Confidence 77764332 11 1223344566777876
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=7.2e-09 Score=97.76 Aligned_cols=282 Identities=11% Similarity=0.133 Sum_probs=178.5
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC-------C
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD-------S 297 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~-------~ 297 (540)
.=+-+.||| .|.+|+|--..| |.+|--.+-.....+ .|. .|.-+.|||+.++|++-+... .
T Consensus 212 Tetyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---------~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 212 TETYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRF---------YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDN 279 (698)
T ss_pred eeeeEEecC-CceEEEEEeccc-eeeecCccHHHHHhc---------cCC-CceeeecCCccceEEEecCCccccCcccC
Confidence 347799999 599999976654 899976665555555 232 378899999999999962210 1
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
....+.|||+.+|........+.. ....-.-..||. |+.++|.-.. .+|.||+...-.. ...+.+ .-..|
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~---~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~l-ld~Ksl----ki~gI 349 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKS---PYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFML-LDKKSL----KISGI 349 (698)
T ss_pred CCceEEEEEccccchhcceeccCC---CccccceEEecc-CCceeEEecc-ceEEEEecCceee-eccccc----CCccc
Confidence 236899999999854444444322 112233468998 8999987776 5699998876432 111112 34668
Q ss_pred eEEEeccCCCEEEEEeC-----CCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEE----------EcCCCe
Q 009203 378 MGVAGMQQKQIVLSAGA-----DKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQT----------GTPGRQ 441 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~----------~~~dg~ 441 (540)
....|+|.+++|+.=+. -..+.+..+-+++.+..... ...-+.+.|-.++ .+|+. .+.-..
T Consensus 350 r~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g---dyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG---DYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred cCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC---cEEEEEEEeeccccccceEee
Confidence 89999999888875432 12355666655555443222 1222233443333 34432 222335
Q ss_pred EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeccCCCCc--ccccccccccceeE
Q 009203 442 LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA---DPVIHLFDIRYSANK--PSQSIRAHQKRVFK 516 (540)
Q Consensus 442 v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~---dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~ 516 (540)
+.|+.++....++.... -...|...+|-|.|+.+++-+. ..++.+|.+.+...+ ++..+. ....+.
T Consensus 427 ~eIfrireKdIpve~ve-------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~ 497 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVE-------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANT 497 (698)
T ss_pred EEEEEeeccCCCceeee-------cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccce
Confidence 77777777665554432 3457889999999988776543 367999998842222 333443 245688
Q ss_pred EEEcCCCCEEEEE---EcCCcEEEEeC
Q 009203 517 AVWHYSHPLLISI---SSDLNIGLHKI 540 (540)
Q Consensus 517 l~~s~~~~~l~s~---~~dg~v~iw~l 540 (540)
+.|+|.|+++|.+ |..|.+.++|.
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEec
Confidence 9999999988776 45677888774
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=3.6e-09 Score=98.77 Aligned_cols=282 Identities=9% Similarity=0.071 Sum_probs=178.3
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC-----
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD----- 296 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~----- 296 (540)
-.-++..++||| .|.+|++.... .|.+|.-.....+.++.. ..|..+.|+|.+++|.+-...+
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~----------~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHAA-GVECWGGPSKAKLVRFRH----------PDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred cCcchhheeecC-cchheehhhcc-ceEEccccchhheeeeec----------CCceecccCcccceeeeeccCCccChh
Confidence 456899999999 59999887655 599999877664444422 3488899999999999872221
Q ss_pred ------CCCCeEEEEecCCCCCceeEEeecCCCCccccee-EEEEeCCCCCEEEEEecCCcEEEEecCCCCCc-ccccee
Q 009203 297 ------SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGGSDHAVVLWSERDAEDS-WKPKAL 368 (540)
Q Consensus 297 ------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~ 368 (540)
..+..+.+||+.++ ..+..+...... ...+ -+.|+- +..+++-- ....++|+++ ++... .....+
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg---~iv~sf~~~~q~-~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~l 171 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASG---MIVFSFNGISQP-YLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNL 171 (561)
T ss_pred hccCCccccCceeEEeccCc---eeEeeccccCCc-ccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhc
Confidence 12346999999987 445555443221 1133 678887 66665544 2356999998 43321 111111
Q ss_pred ecccCCcceeEEEeccCC--CEEEE-----EeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEE----
Q 009203 369 HRNLHSSAVMGVAGMQQK--QIVLS-----AGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTG---- 436 (540)
Q Consensus 369 ~~~~~~~~v~~l~~s~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~---- 436 (540)
....|....|+|.| ..|+. .+..+.+++|.+..+..+.... .......+.|++.+....+++-.
T Consensus 172 ----r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 172 ----RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred ----cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 23568888999864 33443 4557889999998776655433 34455677787776432222211
Q ss_pred ----cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEeccCCCCccccccccc
Q 009203 437 ----TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS--GSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 437 ----~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
.....++|+++........ .+..++|..++|.|+++.+++ |-.+-.+.++|++. .....+.
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~--------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~---Nl~~~~P-- 314 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVE--------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG---NLRFYFP-- 314 (561)
T ss_pred ccceeccceEEEEeeccccccee--------ccccccceeeeecccCCceeEEecccccceeeccccc---ceEEecC--
Confidence 1135678888874443321 144679999999998877654 45778899999984 4333332
Q ss_pred ccceeEEEEcCCCCEEEEEEcC---CcEEEEe
Q 009203 511 QKRVFKAVWHYSHPLLISISSD---LNIGLHK 539 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~~d---g~v~iw~ 539 (540)
...=+.+.|+|.+++++.++-| |.|-+|+
T Consensus 315 e~~rNT~~fsp~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 315 EQKRNTIFFSPHERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred CcccccccccCcccEEEEecCCccccceEEec
Confidence 3334566777777777776644 5566665
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.21 E-value=4.6e-08 Score=91.78 Aligned_cols=266 Identities=11% Similarity=-0.002 Sum_probs=151.9
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee------cCCCCCeEEEEecCCCCCceeEEee
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT------ADSGDSQISVLNLNKTKGRACVTFL 319 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~------~~~~d~~i~vwd~~~~~~~~~~~~~ 319 (540)
++|.+.|..+.+.+.++..... ...+ ++|||+.|+++.. .|-.+..|.+||..+.+ .+..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~---------P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~---~~~~i 93 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL---------PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL---PIADI 93 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC---------Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc---EEeEE
Confidence 7899999999877666643221 1234 9999999988831 01168999999999873 34333
Q ss_pred cCCCC----cccceeEEEEeCCCCCEEEEEe-c-CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe
Q 009203 320 DDKPH----VKGIINSIIFLPWENPCFATGG-S-DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG 393 (540)
Q Consensus 320 ~~~~~----~~~~v~~~~~~p~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 393 (540)
...+. .......++++| +|++|+... . +..|.+.|+.+++.+..... .+...-+..+++..+ +-+
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------p~~~~vy~t~e~~~~--~~~ 164 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV------PDCYHIFPTANDTFF--MHC 164 (352)
T ss_pred ccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC------CCCcEEEEecCCccE--EEe
Confidence 32110 122345789999 998888665 3 78999999999875222211 111111122222222 223
Q ss_pred CCCeEEEEECCC-CCeeee-ecc--C--ccE-EEEeecC-CCCCceEEEEEcCCCeEEEEECCCCcceee-eecccccc-
Q 009203 394 ADKRIIGFDAGV-GRADFK-HQI--E--SKC-MSVLPNP-CDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWKQES- 463 (540)
Q Consensus 394 ~dg~i~iwd~~~-~~~~~~-~~~--~--~~~-~~~~~~~-~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~- 463 (540)
.||......+.. |+.... ... . ..+ ..-.+.+ ++ .++.+... |+|.+.|+........ .+......
T Consensus 165 ~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg---~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 165 RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG---RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCC---cEEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence 344444433322 221100 000 0 000 0002233 33 45555555 9999999755432111 11100000
Q ss_pred ---CccccCeEEEEEcCCCCEEEEEe----------CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC-EEEEE
Q 009203 464 ---SESQSALINQSWSPDGLYITSGS----------ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLISI 529 (540)
Q Consensus 464 ---~~~~~~v~~~~~sp~g~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~ 529 (540)
.-..+.+.-++++|+|+.+++.. ..+.|.++|..+ .+.+..+.. ...++.++++||++ +|++.
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~v-G~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIEL-GHEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeC-CCceeeEEECCCCCeEEEEe
Confidence 01233444599999999888743 124699999887 677777663 34789999999999 77766
Q ss_pred E-cCCcEEEEeC
Q 009203 530 S-SDLNIGLHKI 540 (540)
Q Consensus 530 ~-~dg~v~iw~l 540 (540)
. .++.|.+.|.
T Consensus 318 n~~s~~VsViD~ 329 (352)
T TIGR02658 318 STGDKTLYIFDA 329 (352)
T ss_pred CCCCCcEEEEEC
Confidence 5 6788999874
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.21 E-value=8.2e-08 Score=102.51 Aligned_cols=303 Identities=15% Similarity=0.129 Sum_probs=179.2
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-----------------------CCCcceeecccc-----------
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-----------------------RGSGASLLSTTD----------- 267 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-----------------------~~~~~~~~~~~~----------- 267 (540)
-..+|.|++|||| +.+|+..+.++++.+-+..- |+...++.+...
T Consensus 119 vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPD-EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 3468999999997 88999998888887754221 000011100000
Q ss_pred ------cCCCCCCCCceeEEEecCCCeEEEEeecC--CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC
Q 009203 268 ------CLSPKHRRWPEDIAWHPQGNSLFSAHTAD--SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN 339 (540)
Q Consensus 268 ------~~~~~h~~~V~~~~~~~~~~~l~s~~~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 339 (540)
.... +.+.-..++|-.||.++|+.+... +.-..++||+-+ | ....+.+. -.+--.+++|-| .|
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G---~L~stSE~---v~gLe~~l~WrP-sG 268 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G---ELQSTSEP---VDGLEGALSWRP-SG 268 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c---eEEecccc---CCCccCCccCCC-CC
Confidence 0001 333556799999999999984421 124789999877 3 22222221 233445789999 99
Q ss_pred CEEEEEec---CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee----eee
Q 009203 340 PCFATGGS---DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD----FKH 412 (540)
Q Consensus 340 ~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~ 412 (540)
++||+... ...|.+|.-++-+. ..+ .+........|..+.|++|+..|+....|. |.+|-..+-.-- ..+
T Consensus 269 ~lIA~~q~~~~~~~VvFfErNGLrh-geF-~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~ 345 (928)
T PF04762_consen 269 NLIASSQRLPDRHDVVFFERNGLRH-GEF-TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF 345 (928)
T ss_pred CEEEEEEEcCCCcEEEEEecCCcEe-eeE-ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc
Confidence 99998764 34566776554332 001 111123456799999999999999987665 999998875432 222
Q ss_pred ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEEC----CCCc-----------------ceeeeecccc-------ccC
Q 009203 413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDI----RLRQ-----------------TEIHAFGWKQ-------ESS 464 (540)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~----~~~~-----------------~~~~~~~~~~-------~~~ 464 (540)
........+.|+|..+. .|...+.+|.+..++. .... ..+..+.... ..-
T Consensus 346 ~~~~~~~~~~Wdpe~p~--~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 346 SSSESVNFVKWDPEKPL--RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred cCCCCCCceEECCCCCC--EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence 33334445889998764 3444444455544332 1110 0000010000 001
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc------cccccc----------ccccceeEEEEcCCCCEEEE
Q 009203 465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK------PSQSIR----------AHQKRVFKAVWHYSHPLLIS 528 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~------~~~~~~----------~h~~~i~~l~~s~~~~~l~s 528 (540)
....+|.+++|++++..+++-..||.|.+|........ ....+. .....+..++|..+..+++.
T Consensus 424 ~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (928)
T PF04762_consen 424 ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL 503 (928)
T ss_pred cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence 23568999999999988999999999999996542111 111111 12335788899887776666
Q ss_pred EEcC---CcEEEEe
Q 009203 529 ISSD---LNIGLHK 539 (540)
Q Consensus 529 ~~~d---g~v~iw~ 539 (540)
...+ ..+.+++
T Consensus 504 ~~~~~~~~~i~~~~ 517 (928)
T PF04762_consen 504 SDSDSNQSKIVLVD 517 (928)
T ss_pred EecCcccceEEEEE
Confidence 6554 4555554
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.20 E-value=1.9e-08 Score=93.18 Aligned_cols=158 Identities=12% Similarity=0.107 Sum_probs=118.2
Q ss_pred EEEeccchhcccccCceEEEEEecCCCcEEEEEeCCc-eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCe
Q 009203 210 IHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDG-VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNS 288 (540)
Q Consensus 210 i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 288 (540)
...|++..+--+|.+.|.-..+.-+ +.-++.|..|| .+-|+|..+++..... +.-+.|.++..+++|++
T Consensus 346 ~~~~~~~~iqv~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e~kr~e---------~~lg~I~av~vs~dGK~ 415 (668)
T COG4946 346 MRPWDGYSIQVGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGEVKRIE---------KDLGNIEAVKVSPDGKK 415 (668)
T ss_pred ECCCCCeeEEcCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCceEEEee---------CCccceEEEEEcCCCcE
Confidence 3445555666789999999999886 66889999999 8999999887643222 34466899999999999
Q ss_pred EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC----cEEEEecCCCCCccc
Q 009203 289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH----AVVLWSERDAEDSWK 364 (540)
Q Consensus 289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~ 364 (540)
++++ .....|.+.|++++.. +.... ...+-|+.++|+| ++.+||.+--+| .|++||+.+++.
T Consensus 416 ~vva----Ndr~el~vididngnv----~~idk--S~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki--- 481 (668)
T COG4946 416 VVVA----NDRFELWVIDIDNGNV----RLIDK--SEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI--- 481 (668)
T ss_pred EEEE----cCceEEEEEEecCCCe----eEecc--cccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE---
Confidence 9998 8888999999998743 22222 1246799999999 999999886654 689999999873
Q ss_pred cceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203 365 PKALHRNLHSSAVMGVAGMQQKQIVLSAGA 394 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 394 (540)
..+.. ..+.=.+-+|.|++++|..-+.
T Consensus 482 -y~vTT--~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 482 -YDVTT--PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -EEecC--CcccccCcccCCCCcEEEEEec
Confidence 22221 3333456688999998887654
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=9.7e-08 Score=89.63 Aligned_cols=246 Identities=14% Similarity=0.069 Sum_probs=141.1
Q ss_pred EecCCCcEEEEEe---------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 231 LNPVNEQLFVTSA---------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 231 ~spd~~~~l~tg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
++||+..+.++.+ .+..|.+||..+.+...++........ ........++++|||++|++... +.+..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~-~~~~~~~~~~ls~dgk~l~V~n~--~p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF-LVGTYPWMTSLTPDNKTLLFYQF--SPSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh-hccCccceEEECCCCCEEEEecC--CCCCE
Confidence 9997444444445 578999999999988777754322100 01223447899999999998711 23789
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc-cceeecc----cCCcc
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK-PKALHRN----LHSSA 376 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~----~~~~~ 376 (540)
|.+.|+.++ +.+..+.. .+...-+..++ ...+ .-+.||......+........ ...+... ....+
T Consensus 130 V~VvD~~~~---kvv~ei~v----p~~~~vy~t~e--~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 130 VGVVDLEGK---AFVRMMDV----PDCYHIFPTAN--DTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred EEEEECCCC---cEEEEEeC----CCCcEEEEecC--CccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 999999986 34444432 11122222222 2222 222344444433322111000 0000000 00111
Q ss_pred eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCe-----eeeecc--------CccEEEEeecCCCCCceEEEE-E-----
Q 009203 377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRA-----DFKHQI--------ESKCMSVLPNPCDFNLFMVQT-G----- 436 (540)
Q Consensus 377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~~~~~l~~-~----- 436 (540)
.|.+ +|.+++.... |.|.+.|+..... ...... .....-+++++++. .+++ .
T Consensus 200 ----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~---~lyV~~~~~~~ 271 (352)
T TIGR02658 200 ----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD---RIYLLADQRAK 271 (352)
T ss_pred ----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC---EEEEEecCCcc
Confidence 3455 7877777666 9999999654332 111111 12222378888774 3333 2
Q ss_pred ----cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEeccCCCCcccccc
Q 009203 437 ----TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGS-ADPVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 437 ----~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~-~dg~i~iwd~~~~~~~~~~~~ 507 (540)
...+.|.++|..+.+...... -...+..++++|||+ +|++.. .++.|.++|..+ ++.+..+
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~--------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t--~k~i~~i 338 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIE--------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET--GKELSSV 338 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEe--------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC--CeEEeee
Confidence 122589999999888654432 134789999999999 777665 578899999997 6676666
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=8.2e-10 Score=105.02 Aligned_cols=186 Identities=11% Similarity=0.068 Sum_probs=139.0
Q ss_pred CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec------c--------------CCCEEEEEeCCCe
Q 009203 338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM------Q--------------QKQIVLSAGADKR 397 (540)
Q Consensus 338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s------~--------------~~~~l~~~~~dg~ 397 (540)
...++|....||.+++||...++....+.... .-.+..++..|. | +...++.|...|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 56789999999999999999887422222211 123344444442 2 3357788899999
Q ss_pred EEEEECCCCCeeeeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEE
Q 009203 398 IIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS 474 (540)
Q Consensus 398 i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 474 (540)
|.+|+...|+...... +.+.+.++.++..- ..|.+++.|+.+..|+........ ........+.+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~---~ciyS~~ad~~v~~~~~~~~~~~~-------~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL---GCIYSVGADLKVVYILEKEKVIIR-------IWKEQKPLVSSLC 151 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc---CceEecCCceeEEEEecccceeee-------eeccCCCccceEE
Confidence 9999999998866543 45667777766544 589999999999999998766432 2234456788999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC-----CCEEE-EEEcCCcEEEEe
Q 009203 475 WSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS-----HPLLI-SISSDLNIGLHK 539 (540)
Q Consensus 475 ~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~-----~~~l~-s~~~dg~v~iw~ 539 (540)
.+|||..+++++ +.|.+||+++ .+.+..|.+|.++|.++.|.-+ |.++. +...+.-+.+|-
T Consensus 152 is~D~~~l~~as--~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 152 ISPDGKILLTAS--RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EcCCCCEEEecc--ceEEEEEccC--ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 999999999985 7899999998 8999999999999999999876 55554 445566677774
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.4e-10 Score=122.71 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=140.2
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG 406 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 406 (540)
..|.++.-+| ...+.+||+.||.|++|....++.+..+. ......|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus 2209 ~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~r----t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2209 ENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFR----TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred CceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEee----ccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 4588888889 77788999999999999999887633222 2344889999999999999999999999999998 4
Q ss_pred Ceeeeec-cCccEEEEeecCCCCCceEEEEE---cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203 407 RADFKHQ-IESKCMSVLPNPCDFNLFMVQTG---TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI 482 (540)
Q Consensus 407 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 482 (540)
++....+ +......+.|-.. .++++ +.++.+.+||..-...... ....|.+.++++++-|....|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~s-----~~~tag~s~d~~n~~lwDtl~~~~~s~------v~~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS-----LLATAGRSSDNRNVCLWDTLLPPMNSL------VHTCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred cceeccccCCccccceeeeeh-----hhhccccCCCCCcccchhcccCcccce------eeeecCCCceEEEEcCcceEE
Confidence 4433322 2333344555442 34443 4568899999764332111 126799999999999999999
Q ss_pred EEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 483 TSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++|+.+|.|++||++. .+..++++. ++ ...++++|+..|.++||++
T Consensus 2352 isggr~G~v~l~D~rq--rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQ--RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred EecCCcCcEEEeehHH--HHHHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence 9999999999999996 566666654 44 5679999999999999985
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.7e-09 Score=104.71 Aligned_cols=241 Identities=13% Similarity=0.142 Sum_probs=169.1
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee---------EEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC---------VTFLDDKPHVKGIINSIIFLPWENPCFATG 345 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 345 (540)
....|++|+....+|+.| +.||.+++..+.+...... +..-+...+|.+.|.-+.|+. ..+.|-+.
T Consensus 15 vkL~c~~WNke~gyIAcg----G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtS 89 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACG----GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTS 89 (1189)
T ss_pred ceEEEEEEcccCCeEEec----cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccccc
Confidence 446799999999999999 9999999998876432111 111112235788999999998 88889999
Q ss_pred ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeec
Q 009203 346 GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPN 424 (540)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~ 424 (540)
..+|.|.+|-+-.+.. ...+......+-|.+++|+.||..+.....||.|.+=.++ |..+...... .....+.|+
T Consensus 90 Dt~GlIiVWmlykgsW---~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws 165 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSW---CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWS 165 (1189)
T ss_pred CCCceEEEEeeecccH---HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeec
Confidence 9999999999988764 2223334466789999999999999999999999887776 4444443333 333467888
Q ss_pred CCCCCceEEEEEcCCCeEEEEECCCCc-------ceeeeeccccccCccccCeEEEEEc--------CCCCEEEEEeCCC
Q 009203 425 PCDFNLFMVQTGTPGRQLRLYDIRLRQ-------TEIHAFGWKQESSESQSALINQSWS--------PDGLYITSGSADP 489 (540)
Q Consensus 425 ~~~~~~~~l~~~~~dg~v~i~d~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s--------p~g~~l~sg~~dg 489 (540)
++. ..++.+-.+|.+.+||....- +.+...+ .+......|-.+.|. ||...|+++-.+|
T Consensus 166 ~D~---~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg---~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 166 EDL---EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG---IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred ccH---HHHHhhhcCCcEEEecccccHHHhhhhceEEeeee---eecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 877 567777788999999986421 1111111 111122235555553 4778999999999
Q ss_pred cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 490 VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 490 ~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
.+.|..-.+. ..++..-. .-.|....|+++|.+|+.+|.|.
T Consensus 240 r~QiMR~eND-~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 240 RMQIMRSEND-PEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred eehhhhhcCC-CCCeEEec--ccEeecceecCCCcEEEEccCcc
Confidence 9988776653 33332222 24689999999999999998653
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=2.9e-08 Score=97.38 Aligned_cols=267 Identities=11% Similarity=0.066 Sum_probs=157.7
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
+..++.++.+|.+..+|..+++...+.... ..+.+ ... .+..++.+ ..++.|..||..+++...
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---------~~~~~~p~v--~~~~v~v~----~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS---------SEVLSPPLV--ANGLVVVR----TNDGRLTALDAATGERLW 169 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC---------ceeecCCEE--ECCEEEEE----CCCCeEEEEEcCCCceee
Confidence 456778888999999999998876654321 11111 111 24566666 789999999999874322
Q ss_pred eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC--cceeEEEecc--CCCEEE
Q 009203 315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS--SAVMGVAGMQ--QKQIVL 390 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~--~~~~l~ 390 (540)
............. ..+.... + ..++.+..++.+..+|..+++..|........+.. ..+..+.-+| .+..++
T Consensus 170 ~~~~~~~~~~~~~-~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 170 TYSRVTPALTLRG-SASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred EEccCCCceeecC-CCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 2111100000000 0111222 2 46778888899999999999876543321100000 0000111111 356788
Q ss_pred EEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCe
Q 009203 391 SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSAL 470 (540)
Q Consensus 391 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v 470 (540)
+++.+|.++.||..+|+.+........ ...... + ..+++++.+|.+..+|..+++...... .+.. ...
T Consensus 246 ~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~~--~---~~vyv~~~~G~l~~~d~~tG~~~W~~~----~~~~--~~~ 313 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGRVLWKRDASSY-QGPAVD--D---NRLYVTDADGVVVALDRRSGSELWKND----ELKY--RQL 313 (377)
T ss_pred EEEcCCEEEEEECCCCcEEEeeccCCc-cCceEe--C---CEEEEECCCCeEEEEECCCCcEEEccc----cccC--Ccc
Confidence 888999999999999988765543221 111111 1 367778889999999998887543211 1111 111
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccccee-EEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 471 INQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF-KAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 471 ~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~-~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+... .+..|++++.+|.|+++|..+ ++.+..+..+...+. +.++. + ..|+.++.||.|..|.
T Consensus 314 ssp~i--~g~~l~~~~~~G~l~~~d~~t--G~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 314 TAPAV--VGGYLVVGDFEGYLHWLSRED--GSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred ccCEE--ECCEEEEEeCCCEEEEEECCC--CCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 22222 467889999999999999987 677777765554332 22332 3 3588889999998763
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=6.6e-08 Score=94.99 Aligned_cols=351 Identities=9% Similarity=0.013 Sum_probs=213.3
Q ss_pred CCeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcc
Q 009203 146 GSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSS 220 (540)
Q Consensus 146 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~ 220 (540)
..+..+..|...|+.+.+.|.+..+.-.. ...+-..++++--.+.|.+||.. .-+.
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS-------------------~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~ 106 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLS-------------------PSSSQLLIASADISGRIILVDFVLASVINWLS 106 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccC-------------------ccccceeEEeccccCcEEEEEehhhhhhhhhc
Confidence 34556678889999999999865443100 00122356777777889999775 2278
Q ss_pred cccCceEEEEEec---CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecC
Q 009203 221 LHKRKLRSLSLNP---VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTAD 296 (540)
Q Consensus 221 ~h~~~V~~l~~sp---d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~ 296 (540)
.|.++|..++|-| ++..+|+.-....++.+|+..+|+........ .....|+.+.| |.+.+...
T Consensus 107 ~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys--------~~iLs~f~~DPfd~rh~~~l---- 174 (1062)
T KOG1912|consen 107 HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS--------HEILSCFRVDPFDSRHFCVL---- 174 (1062)
T ss_pred CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC--------CcceeeeeeCCCCcceEEEE----
Confidence 8999999999976 22256666666789999999999876665322 23455677877 34455554
Q ss_pred CCCCeEEEEecCCCC-C---ceeEEeecCCC-------------Cccc---------ceeEEEEeCCCCCEEEEEecCCc
Q 009203 297 SGDSQISVLNLNKTK-G---RACVTFLDDKP-------------HVKG---------IINSIIFLPWENPCFATGGSDHA 350 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~-~---~~~~~~~~~~~-------------~~~~---------~v~~~~~~p~~~~~l~s~~~dg~ 350 (540)
+..|.+.+-+.-... . .+.++.-..+. .+.. ....++|+| .-+.++.......
T Consensus 175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p-~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP-HWRNILFITFPRE 253 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh-hhhceEEEEeccc
Confidence 566666655443111 0 11222211100 0000 012356777 4444444555678
Q ss_pred EEEEecCCCCCccccceeecccCCcceeEEEeccC--CCEEEEEeCCCeEEEEECCC----------------CCeeee-
Q 009203 351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGV----------------GRADFK- 411 (540)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~----------------~~~~~~- 411 (540)
+.++|++-..++. .+.. ..+.+.-+.+-|+ ...|++...||.+.+|-.+. +.....
T Consensus 254 llv~dle~~~~l~---vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~v 328 (1062)
T KOG1912|consen 254 LLVFDLEYECCLA---VVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVV 328 (1062)
T ss_pred eEEEcchhhceeE---EEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEE
Confidence 9999998766532 2222 3344455566554 45788888899888886543 111000
Q ss_pred --ecc------------------------------C-c------------cEEEEeec---------------CC-----
Q 009203 412 --HQI------------------------------E-S------------KCMSVLPN---------------PC----- 426 (540)
Q Consensus 412 --~~~------------------------------~-~------------~~~~~~~~---------------~~----- 426 (540)
... . + -...+.|+ .+
T Consensus 329 r~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~s 408 (1062)
T KOG1912|consen 329 RPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSS 408 (1062)
T ss_pred eechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCC
Confidence 000 0 0 00000000 00
Q ss_pred --------------------CCC-----ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE
Q 009203 427 --------------------DFN-----LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY 481 (540)
Q Consensus 427 --------------------~~~-----~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 481 (540)
+.+ ..+++.|...|+|.++|+.++... ..+..|.+.|.++.|--...+
T Consensus 409 Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~-------~~fsvht~~VkgleW~g~ssl 481 (1062)
T KOG1912|consen 409 GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVA-------ASFSVHTSLVKGLEWLGNSSL 481 (1062)
T ss_pred CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhh-------hhhcccccceeeeeeccceeE
Confidence 000 147889999999999999987642 256778999999999655544
Q ss_pred EEEE---------eCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 482 ITSG---------SADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 482 l~sg---------~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+-.+ +.-+.+.|-|++++-.+.++.+++ ...+|..+..+..|+||+..-.|.-+.+||+
T Consensus 482 vSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 482 VSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDL 550 (1062)
T ss_pred EEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhh
Confidence 4322 223457788888854455554443 4569999999999999999999999999985
No 278
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.15 E-value=1.5e-07 Score=86.27 Aligned_cols=226 Identities=12% Similarity=0.053 Sum_probs=148.4
Q ss_pred eEEEec-CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203 279 DIAWHP-QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER 357 (540)
Q Consensus 279 ~~~~~~-~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 357 (540)
+++|.+ ++.++++- ...+.|..|+..++ . ...+.. ....++++...++ .|+.+.. +.+.++|..
T Consensus 4 gp~~d~~~g~l~~~D----~~~~~i~~~~~~~~---~-~~~~~~-----~~~~G~~~~~~~g-~l~v~~~-~~~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVD----IPGGRIYRVDPDTG---E-VEVIDL-----PGPNGMAFDRPDG-RLYVADS-GGIAVVDPD 68 (246)
T ss_dssp EEEEETTTTEEEEEE----TTTTEEEEEETTTT---E-EEEEES-----SSEEEEEEECTTS-EEEEEET-TCEEEEETT
T ss_pred ceEEECCCCEEEEEE----cCCCEEEEEECCCC---e-EEEEec-----CCCceEEEEccCC-EEEEEEc-CceEEEecC
Confidence 578998 66677776 78999999999875 1 222221 2277888883155 4555554 446666988
Q ss_pred CCCCccccceeec---cc-CCcceeEEEeccCCCEEEEEeCC--------CeEEEEECCCCCeeeeeccCccEEEEeecC
Q 009203 358 DAEDSWKPKALHR---NL-HSSAVMGVAGMQQKQIVLSAGAD--------KRIIGFDAGVGRADFKHQIESKCMSVLPNP 425 (540)
Q Consensus 358 ~~~~~~~~~~~~~---~~-~~~~v~~l~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 425 (540)
+++. ..+.. .. .....+.+++.++|++.++.... |.|..++.. ++.......-.....++|+|
T Consensus 69 ~g~~----~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 69 TGKV----TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp TTEE----EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET
T ss_pred CCcE----EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC
Confidence 8763 22222 11 45678999999999977776543 568888888 66544444456678899999
Q ss_pred CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc
Q 009203 426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ 505 (540)
Q Consensus 426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 505 (540)
++. .++++-+..+.|..|++...............+....+..-.++++.+|++.++....+.|.+++.+ ++.+.
T Consensus 144 dg~--~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~---G~~~~ 218 (246)
T PF08450_consen 144 DGK--TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD---GKLLR 218 (246)
T ss_dssp TSS--EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT---SCEEE
T ss_pred cch--heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC---ccEEE
Confidence 873 2456778889999999975433111111011222223457889999999998888888999999988 66777
Q ss_pred cccccccceeEEEEc-CCCCEEEEE
Q 009203 506 SIRAHQKRVFKAVWH-YSHPLLISI 529 (540)
Q Consensus 506 ~~~~h~~~i~~l~~s-~~~~~l~s~ 529 (540)
.+......+++++|. ++.+.|+..
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEEEE
Confidence 666555589999994 665655443
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.13 E-value=7.9e-08 Score=89.22 Aligned_cols=223 Identities=12% Similarity=0.049 Sum_probs=157.3
Q ss_pred EecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC--CCc---ccceeEE-EEeCCCCCEEEEEecCCcEEEEe
Q 009203 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK--PHV---KGIINSI-IFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 282 ~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~---~~~v~~~-~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.+.||+.|+. +..|.|.+||..+..-.+.-.-+... ... ..+..-+ .|++.+|++++..+. |...|.+
T Consensus 274 ~nsDGkrIvF-----q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~ 347 (668)
T COG4946 274 ANSDGKRIVF-----QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMR 347 (668)
T ss_pred cCCCCcEEEE-----ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEEC
Confidence 3668998888 58899999999875321111111110 000 0111112 256668999998886 7788887
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC-eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK-RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 434 (540)
...+-. ++ .++.+.|.-..+.-+++-++.|..|| .+-++|.++++.......-+.+.++..++++ .+++
T Consensus 348 ~~~~~~---iq----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG---K~~v 417 (668)
T COG4946 348 PWDGYS---IQ----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG---KKVV 417 (668)
T ss_pred CCCCee---EE----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC---cEEE
Confidence 776542 11 34667788888888888899999999 8999999998877777777888999999988 7899
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC----cEEEEeccCCCCccccccccc
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP----VIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~h 510 (540)
++.....+.++|+.++...... +...+-|+.++|||+++++|.+--+| .|++||+.. ++... ....
T Consensus 418 vaNdr~el~vididngnv~~id-------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~--~Kiy~-vTT~ 487 (668)
T COG4946 418 VANDRFELWVIDIDNGNVRLID-------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG--GKIYD-VTTP 487 (668)
T ss_pred EEcCceEEEEEEecCCCeeEec-------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC--CeEEE-ecCC
Confidence 9999999999999998754421 23455799999999999999887665 689999996 33322 2222
Q ss_pred ccceeEEEEcCCCCEEEEEE
Q 009203 511 QKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~ 530 (540)
.+-=.+-+|.|||++|.--+
T Consensus 488 ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 488 TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccccCcccCCCCcEEEEEe
Confidence 22235678899998775443
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=1.6e-09 Score=94.75 Aligned_cols=257 Identities=18% Similarity=0.235 Sum_probs=166.8
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC--ceeEEeecCCC---------CcccceeEEEEeCC-CCC
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG--RACVTFLDDKP---------HVKGIINSIIFLPW-ENP 340 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~---------~~~~~v~~~~~~p~-~~~ 340 (540)
..+.|+++.|...|.+|++| ...|.|.+|.-..... .+.++.++++. .....|..+.|... ...
T Consensus 25 ead~ItaVefd~tg~YlatG----DkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 25 EADKITAVEFDETGLYLATG----DKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred ccceeeEEEeccccceEeec----CCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 34568999999999999999 8889999997654321 11122233321 11235788888752 234
Q ss_pred EEEEEecCCcEEEEecCCCCC-------------------c-------------------cccceeecccCCcceeEEEe
Q 009203 341 CFATGGSDHAVVLWSERDAED-------------------S-------------------WKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 341 ~l~s~~~dg~i~iwd~~~~~~-------------------~-------------------~~~~~~~~~~~~~~v~~l~~ 382 (540)
.++..+.|.+|++|.+..... + ..+..+....|.-.|+++.|
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 577778899999998865411 0 00111122457778899999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeee---ee------ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRADF---KH------QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
+.|...++++ .|-.|.+|++.-....+ .. ....-+.+..|+|..-+ .+.-.+..|.|++-|++.....
T Consensus 181 NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn--~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 181 NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN--VFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc--eEEEecCCCcEEehhhhhhhhc
Confidence 9888877765 56689999987532211 11 11234567778886532 5666777899999999843211
Q ss_pred -----eeeeccc----cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc------------
Q 009203 454 -----IHAFGWK----QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK------------ 512 (540)
Q Consensus 454 -----~~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~------------ 512 (540)
....... .-+.+-...|..+.|+++|+++++-+. -+|.|||++.. ..++.++..|..
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~-k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA-KNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc-cCCceeechHHHHHHHHHhhhhcc
Confidence 1110000 012233457888999999999998754 67999999975 567777765532
Q ss_pred ce---eEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 513 RV---FKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 513 ~i---~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
.| ..+.|+.|.+.+.+|+.....-|+
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeee
Confidence 23 357889899999999988877665
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.08 E-value=8.1e-08 Score=82.66 Aligned_cols=241 Identities=7% Similarity=-0.055 Sum_probs=155.1
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
--+||.|+..|...+|...+.+....+.. .|...|.-+.=.-+ .-.+..+ +.|.++++.++..+....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-------~snn~v~~~~r~cd~~~~~~i~----sndht~k~~~~~~~s~~~ 152 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCD-------VSNNDVTLVKRYCDLKFPLNIA----SNDHTGKTMVVSGDSNKF 152 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeec-------ccccchhhhhhhcccccceeec----cCCcceeEEEEecCcccc
Confidence 34789999999999999987654332211 22222221111111 1235555 789999999888653322
Q ss_pred eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203 315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA 394 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 394 (540)
.+.... -.+.++.+++ ++.++++.+....|..|.+.....- ...+......+.-.+..|+.....+|++..
T Consensus 153 ~~h~~~------~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey--~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 153 AVHNQN------LTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY--IENIYEAPTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred eeeccc------cceeeeEEcC-CCceEEEecCCCcceEEEeCCccce--eeeeEecccCCCceeeeeccCcceEEEEec
Confidence 222211 2378999999 9999999999999999999765421 111122224445577889999999999999
Q ss_pred CCeEEEEECCCCCeee------eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcccc
Q 009203 395 DKRIIGFDAGVGRADF------KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQS 468 (540)
Q Consensus 395 dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 468 (540)
||++.|||++...... ...+.+.+..+.|++.+.. .+|+..-.-+.+.+.|+++........-.......|..
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l-DLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~t 302 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL-DLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNT 302 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc-eEEEEecCcceEEEEEcccCceeeEEecCccccccccc
Confidence 9999999999744321 1235577788888886654 45555556688999999988754443322223333433
Q ss_pred -CeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 469 -ALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 469 -~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.|..-.|+.++.-+.+.+++. +.=|++..
T Consensus 303 q~ifgt~f~~~n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 303 QHIFGTNFNNENESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred cccccccccCCCcccccccchh-hheeeccc
Confidence 377888888777766665543 45566654
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=2.7e-07 Score=80.85 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=132.1
Q ss_pred EEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203 229 LSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN 306 (540)
Q Consensus 229 l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd 306 (540)
++.++ +|++||.- .|..|.|=...+.= .+.+..... ..+ -.=..++|+||+..||.+ ...|+|++||
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpk----D~~-PQWRkl~WSpD~tlLa~a----~S~G~i~vfd 71 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPK----DPN-PQWRKLAWSPDCTLLAYA----ESTGTIRVFD 71 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCC----CCC-chheEEEECCCCcEEEEE----cCCCeEEEEe
Confidence 45566 48877775 45666665544321 111111111 111 123579999999999999 9999999999
Q ss_pred cCCCCCceeEEeecC---CCCcccceeEEEEeCCC-----CCEEEEEecCCcEEEEecCCC--CCccccceeec-ccCCc
Q 009203 307 LNKTKGRACVTFLDD---KPHVKGIINSIIFLPWE-----NPCFATGGSDHAVVLWSERDA--EDSWKPKALHR-NLHSS 375 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~-----~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~-~~~~~ 375 (540)
+... .+...-.. ...-...|.++.|.+.. ...|+.-..+|.++-|-+..+ +.-.....+.. ..+..
T Consensus 72 l~g~---~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 72 LMGS---ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred cccc---eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 9843 22211111 01123457777776522 224555567788887776432 11111122222 22467
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe------EEEEECCC
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ------LRLYDIRL 449 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------v~i~d~~~ 449 (540)
.|.++.|+|..++|++|+.... ..+. .........+...-.+.+. ...++...|+. -.+|.+-+
T Consensus 149 Gi~~~vy~p~h~LLlVgG~~~~------~~~~---s~a~~~GLtaWRiL~~~Py-yk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 149 GINSAVYHPKHRLLLVGGCEQN------QDGM---SKASSCGLTAWRILSDSPY-YKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred ceeEEEEcCCCCEEEEeccCCC------CCcc---ccccccCceEEEEcCCCCc-EEEccccCccccccccccceeeccc
Confidence 8999999999898888775322 0000 0001111122211111111 11122222211 12222221
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
.. .+ .........|..|..||||..||+...+|.|.+|++.+ ......+..
T Consensus 219 ~~----~f---s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs--L~~~~~W~~ 269 (282)
T PF15492_consen 219 FK----FF---SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS--LRLQRSWKQ 269 (282)
T ss_pred ee----ee---eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc--chhhcccch
Confidence 11 00 01122356799999999999999999999999999997 555555543
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=4.5e-08 Score=84.21 Aligned_cols=219 Identities=13% Similarity=0.102 Sum_probs=144.2
Q ss_pred CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCccccee---EEEEeCCCCCEEEEEecCCcEEEEecCCCCCc
Q 009203 286 GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIIN---SIIFLPWENPCFATGGSDHAVVLWSERDAEDS 362 (540)
Q Consensus 286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 362 (540)
..+|+.| +..|...+|...+.+. ....... +...|. ..+- ..-.+..++.|.++++.++..+..
T Consensus 84 c~~la~g----G~~g~fd~~~~~tn~~--h~~~cd~---snn~v~~~~r~cd---~~~~~~i~sndht~k~~~~~~~s~- 150 (344)
T KOG4532|consen 84 CVTLADG----GASGQFDLFACNTNDG--HLYQCDV---SNNDVTLVKRYCD---LKFPLNIASNDHTGKTMVVSGDSN- 150 (344)
T ss_pred ccEEEec----cccceeeeecccCccc--ceeeecc---cccchhhhhhhcc---cccceeeccCCcceeEEEEecCcc-
Confidence 4478888 8999999999987633 2222221 111111 1111 223466778899999999887653
Q ss_pred cccceeecccCCc--ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-e---eeeccCccEEEEeecCCCCCceEEEEE
Q 009203 363 WKPKALHRNLHSS--AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-D---FKHQIESKCMSVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 363 ~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ 436 (540)
...+ |.. .+.++++++|++++++.+....|..|.+..... + ..-.......+..|+..+ ..+|++
T Consensus 151 --~~~~----h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~---~~FAv~ 221 (344)
T KOG4532|consen 151 --KFAV----HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND---LQFAVV 221 (344)
T ss_pred --ccee----eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc---ceEEEE
Confidence 1122 322 388999999999999999999999999876433 1 122233445566666655 689999
Q ss_pred cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC--EEEEEeCCCcEEEEeccCCCCcccccc-------
Q 009203 437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL--YITSGSADPVIHLFDIRYSANKPSQSI------- 507 (540)
Q Consensus 437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~sg~~dg~i~iwd~~~~~~~~~~~~------- 507 (540)
..||++.|||++....+..... .....|.+.+..+.|++.|. +|+..-.-+.+.+.|+++. +-...+
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~--~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY--VNHQVIVIPDDVE 297 (344)
T ss_pred ecCCcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC--ceeeEEecCcccc
Confidence 9999999999998776554432 23456899999999998664 4555556688999999973 222211
Q ss_pred ccccc-ceeEEEEcCCCCEEEEEE
Q 009203 508 RAHQK-RVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 508 ~~h~~-~i~~l~~s~~~~~l~s~~ 530 (540)
..|.. -|..-.|+.++.-+.+.+
T Consensus 298 ~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ccccccccccccccCCCccccccc
Confidence 12333 377788887776554444
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=1.4e-07 Score=92.44 Aligned_cols=262 Identities=11% Similarity=0.057 Sum_probs=153.2
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
+..+++++.+|.|..+|..+++.......... . ..... .++..++++ +.++.+..+|..+++.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-----~---~~~p~--v~~~~v~v~----~~~g~l~ald~~tG~~--- 127 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-----L---SGGVG--ADGGLVFVG----TEKGEVIALDAEDGKE--- 127 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-----c---ccceE--EcCCEEEEE----cCCCEEEEEECCCCcE---
Confidence 34677778889999999998887665532211 0 11222 246677777 8899999999988743
Q ss_pred EEeecCCCCcccceeE-EEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203 316 VTFLDDKPHVKGIINS-IIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA 394 (540)
Q Consensus 316 ~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 394 (540)
+-.... .+.+.+ ... .+..++.++.+|.|+.||..+++..|+..............+.... +..++.+..
T Consensus 128 ~W~~~~----~~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~ 198 (377)
T TIGR03300 128 LWRAKL----SSEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFA 198 (377)
T ss_pred eeeecc----CceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECC
Confidence 211111 112221 122 2346777788999999999999876654321100000000111121 346778888
Q ss_pred CCeEEEEECCCCCeeeeeccCcc--------EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203 395 DKRIIGFDAGVGRADFKHQIESK--------CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES 466 (540)
Q Consensus 395 dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 466 (540)
+|.+..+|.++|+.+........ ...+...|.-.. ..+++++.+|.+..||..+++..... ...
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~~~W~~-----~~~-- 270 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGRVLWKR-----DAS-- 270 (377)
T ss_pred CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCcEEEee-----ccC--
Confidence 99999999999987654332110 000111111001 36777788999999999987643321 111
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 467 QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 467 ~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
....... ++..++.++.||.|+.+|..+ ++.+-..... ......... .+..|++++.||.|++||
T Consensus 271 --~~~~p~~--~~~~vyv~~~~G~l~~~d~~t--G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 271 --SYQGPAV--DDNRLYVTDADGVVVALDRRS--GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred --CccCceE--eCCEEEEECCCCeEEEEECCC--CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 1112222 567788888999999999987 4444333211 111222222 456888899999999887
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.04 E-value=4.8e-07 Score=96.79 Aligned_cols=245 Identities=11% Similarity=0.145 Sum_probs=158.4
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEE----ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL----NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD 348 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw----d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 348 (540)
..+.|.++.|.++...++.+ ..+|.|.+. +..+.. .+.+..+. +.|.+++|+| |+.+|+..+.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~----~~~Gdi~~~~~~~~~~~~~-~E~VG~vd------~GI~a~~WSP-D~Ella~vT~~ 141 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIA----LASGDIILVREDPDPDEDE-IEIVGSVD------SGILAASWSP-DEELLALVTGE 141 (928)
T ss_pred CCCcEEEEEeccCCCcEEEE----ECCceEEEEEccCCCCCce-eEEEEEEc------CcEEEEEECC-CcCEEEEEeCC
Confidence 34678999999999988888 889999999 555431 23333333 4599999999 99999999988
Q ss_pred CcEEEEecCC-------------C--CC---ccccc-------------------eee------cccCCcceeEEEeccC
Q 009203 349 HAVVLWSERD-------------A--ED---SWKPK-------------------ALH------RNLHSSAVMGVAGMQQ 385 (540)
Q Consensus 349 g~i~iwd~~~-------------~--~~---~~~~~-------------------~~~------~~~~~~~v~~l~~s~~ 385 (540)
+++.+.+-.- + +. -|..+ ... .. ..+.-..++|-.|
T Consensus 142 ~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD 220 (928)
T PF04762_consen 142 GNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD 220 (928)
T ss_pred CEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC
Confidence 8887643110 0 00 00000 000 00 2334567899999
Q ss_pred CCEEEEEeC---C---CeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCCcceee
Q 009203 386 KQIVLSAGA---D---KRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 386 ~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~ 455 (540)
|.++++.+. . +.+++|+-+ |....... ..+--.+++|-|.+ .++|+... ...|.+|.-+..+.--.
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG---~lIA~~q~~~~~~~VvFfErNGLrhgeF 296 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG---NLIASSQRLPDRHDVVFFERNGLRHGEF 296 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC---CEEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence 999998775 2 479999976 55433322 23334578899988 57777643 35677787664432221
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCC-EEEEEEcCC
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHP-LLISISSDL 533 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~-~l~s~~~dg 533 (540)
.+ .+......|..+.|++|+..||..-.|. |.+|-..+--...-..+... ...+..+.|+|... .|...+.+|
T Consensus 297 ~l----~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 297 TL----RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG 371 (928)
T ss_pred ec----CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence 11 2224456789999999999999987666 99999887322233333322 23455699999654 566666667
Q ss_pred cEEEEe
Q 009203 534 NIGLHK 539 (540)
Q Consensus 534 ~v~iw~ 539 (540)
.+..++
T Consensus 372 ~~~~~~ 377 (928)
T PF04762_consen 372 QYEIYD 377 (928)
T ss_pred cEEEEE
Confidence 776654
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=3.2e-07 Score=89.98 Aligned_cols=193 Identities=7% Similarity=-0.002 Sum_probs=116.6
Q ss_pred CceeEEEecCCCe-EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE-EecC--CcE
Q 009203 276 WPEDIAWHPQGNS-LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT-GGSD--HAV 351 (540)
Q Consensus 276 ~V~~~~~~~~~~~-l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~d--g~i 351 (540)
.+....|+|||+. ++..... +.+..|.++|+.++.. ..+... .+......|+| |+..++. .+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~-~~~~~Iyv~dl~tg~~-~~lt~~------~g~~~~~~~SP-DG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYG-ERKPTLYKYNLYTGKK-EKIASS------QGMLVVSDVSK-DGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEcc-CCCCEEEEEECCCCcE-EEEecC------CCcEEeeEECC-CCCEEEEEEccCCCcEE
Confidence 4668999999985 5543221 2356899999987632 222221 24466788999 8876654 3333 468
Q ss_pred EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-C--eEEEEECCCCCeeeeeccCccEEEEeecCCCC
Q 009203 352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDF 428 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (540)
+++|+.++.. ..+.. +........|+|||+.|+..+.. + .|+++|+.+++.......... ...|+|++.
T Consensus 260 y~~dl~~g~~----~~LT~--~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~ 331 (419)
T PRK04043 260 YLYDTNTKTL----TQITN--YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKN 331 (419)
T ss_pred EEEECCCCcE----EEccc--CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCC
Confidence 8889887752 33322 22223456899999988877642 2 688889987776333222221 247899884
Q ss_pred CceEEEEEcCC---------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-C--cEEEEec
Q 009203 429 NLFMVQTGTPG---------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-P--VIHLFDI 496 (540)
Q Consensus 429 ~~~~l~~~~~d---------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-g--~i~iwd~ 496 (540)
.++..+.. ..|.+.|+.++..... ... .......|+|||+.|+....+ + .+.+.++
T Consensus 332 ---~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L--------T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 332 ---YIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL--------TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred ---EEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC--------CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 44433322 3688889877653221 111 122357899999988765543 2 3556666
Q ss_pred c
Q 009203 497 R 497 (540)
Q Consensus 497 ~ 497 (540)
+
T Consensus 400 ~ 400 (419)
T PRK04043 400 N 400 (419)
T ss_pred C
Confidence 5
No 287
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.01 E-value=6.1e-07 Score=81.19 Aligned_cols=249 Identities=13% Similarity=0.125 Sum_probs=149.2
Q ss_pred EEEEEecCCCcEEEEEeCCce-EEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe-ecCCCCCeEEE
Q 009203 227 RSLSLNPVNEQLFVTSALDGV-IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH-TADSGDSQISV 304 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~~~~~d~~i~v 304 (540)
..++.+|+.+..++.+-.-|+ ..+||..+++....+.....-...|| -.|++||++|++.= ......|.|-|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEE
Confidence 457778865777777777765 57899988887665544333222344 78999999999861 11245689999
Q ss_pred EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec------------------CCcEEEEecCCCCCccccc
Q 009203 305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS------------------DHAVVLWSERDAEDSWKPK 366 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~ 366 (540)
||...+ ...+..+.. +.-....+.+.| ++..|+.+-. +-++...|..+++.+.+..
T Consensus 82 yd~~~~--~~ri~E~~s---~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 82 YDAARG--YRRIGEFPS---HGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred EECcCC--cEEEeEecC---CCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 999943 344545544 233356788999 8877776521 2334455555655421111
Q ss_pred eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203 367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD 446 (540)
Q Consensus 367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d 446 (540)
+....|...|..+++.++|..++..-..|.- .. ..-+++.-..++.+..++
T Consensus 156 -Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~-------~~---------------------~~PLva~~~~g~~~~~~~ 206 (305)
T PF07433_consen 156 -LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP-------GD---------------------APPLVALHRRGGALRLLP 206 (305)
T ss_pred -cCccccccceeeEEecCCCcEEEEEecCCCC-------Cc---------------------cCCeEEEEcCCCcceecc
Confidence 1113356667777777766555443332210 00 002444444444455555
Q ss_pred CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCE
Q 009203 447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPL 525 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~ 525 (540)
..... ...-.+.+-+|+++++|.++++.+ ..|.+.+||..+ +..+....-. .+..++-.+++ +
T Consensus 207 ~p~~~-----------~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t--g~~~~~~~l~--D~cGva~~~~~-f 270 (305)
T PF07433_consen 207 APEEQ-----------WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT--GRLLGSVPLP--DACGVAPTDDG-F 270 (305)
T ss_pred CChHH-----------HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC--CCEeeccccC--ceeeeeecCCc-e
Confidence 44222 122356889999999998886655 567899999998 6666555433 36677777666 5
Q ss_pred EEEEEcC
Q 009203 526 LISISSD 532 (540)
Q Consensus 526 l~s~~~d 532 (540)
++|.+..
T Consensus 271 ~~ssG~G 277 (305)
T PF07433_consen 271 LVSSGQG 277 (305)
T ss_pred EEeCCCc
Confidence 6665543
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.00 E-value=7.5e-09 Score=94.07 Aligned_cols=153 Identities=16% Similarity=0.084 Sum_probs=105.3
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCe----eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
...+..++.+++++++..+....+++++.... +..........++.+..++......-..+....+.+|....+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34455677888888888888877777765432 22233334444555554443222222334445556665554222
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEc
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
...-+|-+.++.++|+||+++|+++..|..|+|-.+.. .-.+..+ -||..-|..++.-++ ..|+|+|.
T Consensus 145 --------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa--~f~IesfclGH~eFVS~isl~~~-~~LlS~sG 213 (390)
T KOG3914|consen 145 --------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA--TFVIESFCLGHKEFVSTISLTDN-YLLLSGSG 213 (390)
T ss_pred --------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc--ccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence 13457999999999999999999999999999988875 3344444 479999999999765 45899999
Q ss_pred CCcEEEEeC
Q 009203 532 DLNIGLHKI 540 (540)
Q Consensus 532 dg~v~iw~l 540 (540)
|++|++||+
T Consensus 214 D~tlr~Wd~ 222 (390)
T KOG3914|consen 214 DKTLRLWDI 222 (390)
T ss_pred CCcEEEEec
Confidence 999999996
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=5.7e-08 Score=95.40 Aligned_cols=246 Identities=12% Similarity=0.090 Sum_probs=166.1
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-----------CCE
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-----------NPC 341 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------~~~ 341 (540)
|...-.++.|+|.| +||.| ....|.+-|..+- +.++.++ +|...|+.+.|.|.. .-+
T Consensus 14 ~~sN~~A~Dw~~~G-LiAyg-----shslV~VVDs~s~---q~iqsie---~h~s~V~~VrWap~~~p~~llS~~~~~ll 81 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYG-----SHSLVSVVDSRSL---QLIQSIE---LHQSAVTSVRWAPAPSPRDLLSPSSSQLL 81 (1062)
T ss_pred CcccccccccCccc-eEEEe-----cCceEEEEehhhh---hhhhccc---cCccceeEEEeccCCCchhccCcccccee
Confidence 33446688999877 66665 5667888888764 3344444 577889999998731 235
Q ss_pred EEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc---CC-CEEEEEeCCCeEEEEECCCCCeeeeeccCcc
Q 009203 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ---QK-QIVLSAGADKRIIGFDAGVGRADFKHQIESK 417 (540)
Q Consensus 342 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 417 (540)
|+++...|.|.+||...+.. ......|..++..++|-+ +. .+|++-....++.+|+..+|+.+..+.....
T Consensus 82 iAsaD~~GrIil~d~~~~s~-----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 82 IASADISGRIILVDFVLASV-----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred EEeccccCcEEEEEehhhhh-----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 77778889999999998763 223345888999999965 33 5677777788999999999999988877766
Q ss_pred EEE-EeecCCCCCceEEEEEcCCCeEEEEECCCCc---ceeeeecccccc-------------CccccC---------eE
Q 009203 418 CMS-VLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ---TEIHAFGWKQES-------------SESQSA---------LI 471 (540)
Q Consensus 418 ~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~~-------------~~~~~~---------v~ 471 (540)
+.+ +.++|.+.. .+..-+..|.|.+-+.-... .+.+.+.+.... ..+... ..
T Consensus 157 iLs~f~~DPfd~r--h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSR--HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred ceeeeeeCCCCcc--eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 664 889998764 44444455666665543211 111111111000 001111 11
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC--EEEEEEcCCcEEEEe
Q 009203 472 NQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP--LLISISSDLNIGLHK 539 (540)
Q Consensus 472 ~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~--~l~s~~~dg~v~iw~ 539 (540)
.++|+|.-+-++-......+.|+|++- ..++....-..+.+.-+.|-|+++ .|++.-.||.+.||.
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~--~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEY--ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchh--hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 247788766555555677899999997 667777766666677788888774 799999999999984
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=7.6e-10 Score=109.62 Aligned_cols=225 Identities=10% Similarity=0.030 Sum_probs=152.5
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.++..|+...+|++|+- +.++|+.|+..|.|+++++.+|...... .+|..+|+.+.=+-+|..+++.+.
T Consensus 1095 ~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~--------ncH~SavT~vePs~dgs~~Ltsss-- 1163 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESV--------NCHQSAVTLVEPSVDGSTQLTSSS-- 1163 (1516)
T ss_pred hhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccc--------cccccccccccccCCcceeeeecc--
Confidence 45788999999999999 4899999999999999999998765555 589999999999999997776521
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
...--..+|++.+. ......+. .-.++.|+. ....-+.|+......+||+.++....+...- ..+....
T Consensus 1164 ~S~PlsaLW~~~s~--~~~~Hsf~-------ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~-~~~~~y~ 1232 (1516)
T KOG1832|consen 1164 SSSPLSALWDASST--GGPRHSFD-------EDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTD-TVTSSYS 1232 (1516)
T ss_pred ccCchHHHhccccc--cCcccccc-------ccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCc-chhhhhh
Confidence 23335789998753 23344443 356888986 4444455555567899999998752211100 0112223
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
-++..|+|+..+++ .||. +||.+..+.+..+..-..-..-.|+|.+ .-++..+ .|||+++.......
T Consensus 1233 ~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g---~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSG---NEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred ccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCC---ceEEeec-----hhhhhHHHHHHhcC
Confidence 37788999988887 4664 6999987666554433344455688877 4455543 48999987643321
Q ss_pred eccccccCccccCeEEEEEcCCCCEEEEE
Q 009203 457 FGWKQESSESQSALINQSWSPDGLYITSG 485 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 485 (540)
.. -.-+.+.|+..|..+...
T Consensus 1300 P~---------Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1300 PS---------LDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred cc---------ccceEEEeccCccchhhh
Confidence 11 123567888888766543
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.96 E-value=1.4e-06 Score=76.49 Aligned_cols=231 Identities=16% Similarity=0.125 Sum_probs=130.0
Q ss_pred EEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC
Q 009203 280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA 359 (540)
Q Consensus 280 ~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 359 (540)
++.+.+|+.||+. .|..|-|-..+..-. .++............-.-++|+| |+.+||.+...|+|++||+...
T Consensus 3 ~~~~~~Gk~lAi~-----qd~~iEiRsa~Ddf~-si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGKLLAIL-----QDQCIEIRSAKDDFS-SIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCcEEEEE-----eccEEEEEeccCCch-heeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccc
Confidence 5677899999985 888888876654311 11111111111123467899999 9999999999999999999875
Q ss_pred CCccccceeec-ccCCcceeEEEeccC------CCEEEEEeCCCeEEEEECCCC--C---eeeee----ccCccEEEEee
Q 009203 360 EDSWKPKALHR-NLHSSAVMGVAGMQQ------KQIVLSAGADKRIIGFDAGVG--R---ADFKH----QIESKCMSVLP 423 (540)
Q Consensus 360 ~~~~~~~~~~~-~~~~~~v~~l~~s~~------~~~l~~~~~dg~i~iwd~~~~--~---~~~~~----~~~~~~~~~~~ 423 (540)
....-...... ..-...|.++.|.+- ...|++....|.++-|-+..+ + ....+ .....+.++.+
T Consensus 76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 43110010000 113356777777442 235667777888877765332 1 11221 23457788888
Q ss_pred cCCCCCceEEEEEcC-CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE--EEEEeCCCc------EEEE
Q 009203 424 NPCDFNLFMVQTGTP-GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY--ITSGSADPV------IHLF 494 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~--l~sg~~dg~------i~iw 494 (540)
+|.. ++|++|+. ...-..+ ......+++-..-.+..+ .++...|+. ..+|
T Consensus 156 ~p~h---~LLlVgG~~~~~~~~s------------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 156 HPKH---RLLLVGGCEQNQDGMS------------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred cCCC---CEEEEeccCCCCCccc------------------cccccCceEEEEcCCCCcEEEccccCcccccccccccee
Confidence 8876 45544443 3210000 011122333222222221 122222221 1334
Q ss_pred eccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 495 DIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 495 d~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+-+ .+...........|..|..||||..||+...+|.|.+|+|
T Consensus 215 ~~~~--~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 215 RIPS--FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred eccc--eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 3332 1221122234568999999999999999999999999986
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=5.3e-07 Score=88.47 Aligned_cols=203 Identities=11% Similarity=-0.007 Sum_probs=121.7
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCE-EEEEecC---CcEEEEecCCCCCccccceeecccCC
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC-FATGGSD---HAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
...|.+-|.+.. ........ +......|+| +++. ++..+.+ ..|+++|+.+++. ..+.. ..
T Consensus 168 ~~~l~~~d~dg~---~~~~~~~~-----~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~----~~lt~--~~ 232 (419)
T PRK04043 168 KSNIVLADYTLT---YQKVIVKG-----GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKK----EKIAS--SQ 232 (419)
T ss_pred cceEEEECCCCC---ceeEEccC-----CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcE----EEEec--CC
Confidence 446666666532 11222221 3577899999 8874 5544433 5699999988863 33332 34
Q ss_pred cceeEEEeccCCCEEEEEeC---CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC--eEEEEECCC
Q 009203 375 SAVMGVAGMQQKQIVLSAGA---DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRL 449 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~ 449 (540)
+......|+|||+.++.... +..|.++|+.++................|+|++.. ++++....+ .|.++|+.+
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~--I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKR--IVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCE--EEEEECCCCCceEEEEECCC
Confidence 45667889999987765432 35688889887765443333333445679998842 333333333 688888877
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---------CcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s 520 (540)
++...... .+. ....|||||++|+..+.. ..|.+.|+..+. ...+... .......|+
T Consensus 311 g~~~rlt~------~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~-~~~~~p~~S 376 (419)
T PRK04043 311 GSVEQVVF------HGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN-GVNQFPRFS 376 (419)
T ss_pred CCeEeCcc------CCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC-CCcCCeEEC
Confidence 66422211 111 124899999998866543 367888887632 2233322 223458899
Q ss_pred CCCCEEEEEEcC
Q 009203 521 YSHPLLISISSD 532 (540)
Q Consensus 521 ~~~~~l~s~~~d 532 (540)
|||+.|+..+.+
T Consensus 377 PDG~~I~f~~~~ 388 (419)
T PRK04043 377 SDGGSIMFIKYL 388 (419)
T ss_pred CCCCEEEEEEcc
Confidence 999977665543
No 293
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.95 E-value=6.8e-07 Score=97.49 Aligned_cols=215 Identities=13% Similarity=0.138 Sum_probs=134.6
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC--CCC-------CCCCceeEEEecC-CCeEEEEee
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL--SPK-------HRRWPEDIAWHPQ-GNSLFSAHT 294 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~--~~~-------h~~~V~~~~~~~~-~~~l~s~~~ 294 (540)
.-..|+++++++.++++-.....|+++|..++. +.++....... ..+ .......++|+|+ +.++++.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad-- 701 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM-- 701 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--
Confidence 358899999633344544556789999987643 22332110000 000 0123468999994 5555665
Q ss_pred cCCCCCeEEEEecCCCCCceeEEeecCCC------------CcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCC
Q 009203 295 ADSGDSQISVLNLNKTKGRACVTFLDDKP------------HVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAED 361 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~ 361 (540)
..++.|++||..++. +..+.+.+ ..-.....|+|+| ++. ++++.+.++.|++||+.++..
T Consensus 702 --~~~~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 702 --AGQHQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred --CCCCeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcE
Confidence 788999999987652 11111100 0112466899999 776 556667779999999987642
Q ss_pred cccc-------ceeecc---------cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC----------
Q 009203 362 SWKP-------KALHRN---------LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---------- 415 (540)
Q Consensus 362 ~~~~-------~~~~~~---------~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------- 415 (540)
.... ..+... .......+++++++|+++++.+.++.|++||..++.........
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 1000 000000 01123468999999999999999999999999877654322111
Q ss_pred ----ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 416 ----SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 416 ----~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
.....+++++++ .++++.+.++.|++||+.++..
T Consensus 855 ~a~l~~P~GIavd~dG---~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 855 KAQLSEPAGLALGENG---RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccCCceEEEEeCCC---CEEEEECCCCEEEEEECCCCcc
Confidence 245677888876 5788888999999999988654
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=3.9e-09 Score=99.40 Aligned_cols=206 Identities=15% Similarity=0.165 Sum_probs=135.6
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGG 346 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 346 (540)
.||...|..++--.+.+-++++ +.|.+|++|.+..... ..|.-+.. .|+.+|.++.|.. +.+.+++
T Consensus 732 ~GH~~~iRai~AidNENSFiSA----SkDKTVKLWSik~EgD~~~tsaCQfTY~---aHkk~i~~igfL~-~lr~i~S-- 801 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISA----SKDKTVKLWSIKPEGDEIGTSACQFTYQ---AHKKPIHDIGFLA-DLRSIAS-- 801 (1034)
T ss_pred cCcHHHhHHHHhcccccceeec----cCCceEEEEEeccccCccccceeeeEhh---hccCcccceeeee-ccceeee--
Confidence 6999999998877778888999 9999999999875321 11333333 3778899999988 7666665
Q ss_pred cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEE-EeCCCeEEEEECCCCCeeeeec------cCccEE
Q 009203 347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDAGVGRADFKHQ------IESKCM 419 (540)
Q Consensus 347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~------~~~~~~ 419 (540)
.||.|.+||.--+..+.+.......+..+.|.|+.-- +...++. ++...+|+++|.+.+.-..... ......
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 4789999999877753322222222333444444321 3344444 4778899999999876543322 224556
Q ss_pred EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEE-EeccC
Q 009203 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHL-FDIRY 498 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~i-wd~~~ 498 (540)
+++..+.+ .+++++-.+|+|.+.|.+++..... + .........++ .|..+.|+....|.++.+ |..-.
T Consensus 881 ~iaVa~~G---N~lAa~LSnGci~~LDaR~G~vINs-w------rpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 881 AIAVADKG---NKLAAALSNGCIAILDARNGKVINS-W------RPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred EEEeccCc---chhhHHhcCCcEEEEecCCCceecc-C------Ccccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 77777766 6899999999999999998874221 1 11111112222 355667777777888888 76654
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=2.8e-08 Score=90.41 Aligned_cols=168 Identities=14% Similarity=0.151 Sum_probs=108.7
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
+..+.++| ++++||.+..+....++++........+.... .-...-+++.|..+......+-. .+....+.+|
T Consensus 65 ~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-----~v~~~~~ai~~~~~~~sv~v~dk-agD~~~~di~ 137 (390)
T KOG3914|consen 65 PALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-----CVPKRPTAISFIREDTSVLVADK-AGDVYSFDIL 137 (390)
T ss_pred ccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEe-----ecccCcceeeeeeccceEEEEee-cCCceeeeee
Confidence 34445566 58888888777777777766544312221111 11122345555555554444300 0445555666
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ 385 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 385 (540)
....+ .+...+ +|-..++.++|+| |+.+|+++..|..|++-....... ..-...||...|..++..+
T Consensus 138 s~~~~---~~~~~l----GhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~----IesfclGH~eFVS~isl~~- 204 (390)
T KOG3914|consen 138 SADSG---RCEPIL----GHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFV----IESFCLGHKEFVSTISLTD- 204 (390)
T ss_pred ccccc---Ccchhh----hhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccc----hhhhccccHhheeeeeecc-
Confidence 55543 222222 3678899999999 999999999999999977765432 1122367999999999985
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeec
Q 009203 386 KQIVLSAGADKRIIGFDAGVGRADFKHQ 413 (540)
Q Consensus 386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 413 (540)
++.|++++.|++|++||+++|+.+....
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcccccc
Confidence 5679999999999999999999875433
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.5e-08 Score=89.66 Aligned_cols=255 Identities=13% Similarity=0.142 Sum_probs=172.3
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC-C
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG-D 299 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~-d 299 (540)
-|.+.|+.+.-+- ..++.+++.||.++.|.-..-.. ..+...+ ..|...|.+++.+-+|..+.+. +. |
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isG-vEfVKhF----raHL~~I~sl~~S~dg~L~~Sv----~d~D 75 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISG-VEFVKHF----RAHLGVILSLAVSYDGWLFRSV----EDPD 75 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccc-eeehhhh----HHHHHHHHhhhccccceeEeec----cCcc
Confidence 5888888888774 67999999999999998654221 2333322 3677788899999999999997 56 9
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC--CEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN--PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
..++++|+.+-.....+... .. .+.+ ++..++.+. .+-++.-.++.+.++|-....+ ........|..+|
T Consensus 76 hs~KvfDvEn~DminmiKL~-~l---Pg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~---q~~~fkklH~sPV 147 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIKLV-DL---PGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC---QDGYFKKLHFSPV 147 (558)
T ss_pred cceeEEEeeccchhhhcccc-cC---CCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcC---ccceecccccCce
Confidence 99999999864221112211 11 1111 222223111 2233345678999999887764 3344445699999
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCC------CCeeee----------eccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGV------GRADFK----------HQIESKCMSVLPNPCDFNLFMVQTGTPGRQ 441 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 441 (540)
..+.+++-+..+++....|.|.-|.... +..... ........++.++|++ ..+.+-+.|..
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g---~qistl~~Drk 224 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG---AQISTLNPDRK 224 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc---CcccccCcccE
Confidence 9999999999999999999999999873 111111 1224566788999988 57788889999
Q ss_pred EEEEECCCCcceeeee--------------cc-----------ccccCcccc-CeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 442 LRLYDIRLRQTEIHAF--------------GW-----------KQESSESQS-ALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 442 v~i~d~~~~~~~~~~~--------------~~-----------~~~~~~~~~-~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
|++++.+++......- +. ...+..|.. .-+.+.|+..|++|+.|+-=| |++.+
T Consensus 225 VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin 303 (558)
T KOG0882|consen 225 VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVIN 303 (558)
T ss_pred EEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEE
Confidence 9999999865322110 00 011222332 345678999999999998766 88888
Q ss_pred ccC
Q 009203 496 IRY 498 (540)
Q Consensus 496 ~~~ 498 (540)
+.+
T Consensus 304 ~~t 306 (558)
T KOG0882|consen 304 LDT 306 (558)
T ss_pred eec
Confidence 886
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=7.2e-08 Score=84.68 Aligned_cols=258 Identities=14% Similarity=0.178 Sum_probs=162.4
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC-CcceeecccccCCCCC------------CCCceeEEEecCCC-
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG-SGASLLSTTDCLSPKH------------RRWPEDIAWHPQGN- 287 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~h------------~~~V~~~~~~~~~~- 287 (540)
..+.|++|.|.. .|.+|++|...|.|.++.-.... +...+...+ .+| ...|..+.|..++.
T Consensus 25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teF----Qshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF----QSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhh----cccccchhhhhhccHHHHhhheeeecCCCc
Confidence 346799999998 49999999999999999765432 222222221 233 24478899976544
Q ss_pred --eEEEEeecCCCCCeEEEEecCCCCC----------------c------------------eeEEeecC---CCCcccc
Q 009203 288 --SLFSAHTADSGDSQISVLNLNKTKG----------------R------------------ACVTFLDD---KPHVKGI 328 (540)
Q Consensus 288 --~l~s~~~~~~~d~~i~vwd~~~~~~----------------~------------------~~~~~~~~---~~~~~~~ 328 (540)
+|++ +.|.+|++|.+....- . ..+..... ...|...
T Consensus 100 ~hFLls-----tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 100 NHFLLS-----TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred ceEEEe-----cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 4555 6999999998864300 0 00000000 0145667
Q ss_pred eeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC-----CcceeEEEeccC-CCEEEEEeCCCeEEEEE
Q 009203 329 INSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH-----SSAVMGVAGMQQ-KQIVLSAGADKRIIGFD 402 (540)
Q Consensus 329 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd 402 (540)
+.++.|+. +...++++. |-.|.+|++.-..... ..+....| ..-|++..|+|. ...+...+..|.|++-|
T Consensus 175 iNSiS~Ns-D~et~lSaD-dLrINLWnl~i~D~sF--nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 175 INSISFNS-DKETLLSAD-DLRINLWNLEIIDGSF--NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred eeeeeecC-chheeeecc-ceeeeeccccccCCce--EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 88999998 777777654 6789999887544321 22221222 345788899985 35566677889999999
Q ss_pred CCCCCe------eeee-----------ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc
Q 009203 403 AGVGRA------DFKH-----------QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE 465 (540)
Q Consensus 403 ~~~~~~------~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 465 (540)
++.... +... ..-..+..+.|++.+ +++++-+ --+|++||++..+.++.+......+..
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng---ryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG---RYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC---cEEEEec-cceEEEEecccccCCceeechHHHHHH
Confidence 984322 1111 112345677888877 6666543 468999999988777665532221110
Q ss_pred ------cccCe---EEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 466 ------SQSAL---INQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 466 ------~~~~v---~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
....| ..+.||-|.+.+.+|+..+..-||-..
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 11122 347888888889999888777777644
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.87 E-value=3.5e-06 Score=83.03 Aligned_cols=266 Identities=9% Similarity=0.029 Sum_probs=154.2
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCce-eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE-DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
..++.++.+|.+..+|..+++...+..... .+. +... .+..++.+ ..++.|..+|..+++....
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---------~~~ssP~v--~~~~v~v~----~~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG---------EALSRPVV--SDGLVLVH----TSNGMLQALNESDGAVKWT 185 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC---------ceecCCEE--ECCEEEEE----CCCCEEEEEEccCCCEeee
Confidence 356677789999999999998777664321 111 1111 23456666 7899999999998843222
Q ss_pred EEeecCCCCcc-cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc-CC-cceeEEEecc--CCCEEE
Q 009203 316 VTFLDDKPHVK-GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL-HS-SAVMGVAGMQ--QKQIVL 390 (540)
Q Consensus 316 ~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~-~~v~~l~~s~--~~~~l~ 390 (540)
... .. +... ....+.... +..++.++.+|.+..+|..+++..|........+ +. .....+..+| .+..++
T Consensus 186 ~~~-~~-~~~~~~~~~sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy 260 (394)
T PRK11138 186 VNL-DV-PSLTLRGESAPATA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY 260 (394)
T ss_pred ecC-CC-CcccccCCCCCEEE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE
Confidence 211 00 0000 000111111 2356677788999999999998776543221100 00 0011111122 356677
Q ss_pred EEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCe
Q 009203 391 SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSAL 470 (540)
Q Consensus 391 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v 470 (540)
.++.+|.+..+|..+|+.+........ ..+.... ..++.++.+|.+..+|..+++.....- .. .+ ...
T Consensus 261 ~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~-----~~vy~~~~~g~l~ald~~tG~~~W~~~----~~-~~-~~~ 328 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQIVWKREYGSV-NDFAVDG-----GRIYLVDQNDRVYALDTRGGVELWSQS----DL-LH-RLL 328 (394)
T ss_pred EEEcCCeEEEEECCCCCEEEeecCCCc-cCcEEEC-----CEEEEEcCCCeEEEEECCCCcEEEccc----cc-CC-Ccc
Confidence 788899999999999988766543321 1111111 367777889999999998876533211 00 00 011
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE-EEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 471 INQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK-AVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 471 ~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+..+ .+.+|+.++.||.|+++|..+ ++.+.........+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 329 ~sp~v--~~g~l~v~~~~G~l~~ld~~t--G~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 329 TAPVL--YNGYLVVGDSEGYLHWINRED--GRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cCCEE--ECCEEEEEeCCCEEEEEECCC--CCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11222 256788889999999999987 6665555433222322 222 2457888899999988763
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.87 E-value=4.9e-08 Score=83.62 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=98.5
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe--ecCCCCCeEEEEecCCCCCc
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH--TADSGDSQISVLNLNKTKGR 313 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~--~~~~~d~~i~vwd~~~~~~~ 313 (540)
+.-++++..||.+.+.+.+.. ..+..... ..|.+ -.+.++...++.|.++. +. ..-+..+.|+++..+
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~---~~~~~-~as~~~~~~~~~i~s~~~g~~-n~~d~~~a~~~~p~~-- 170 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKD---LALMSRIP---SIHSG-SASRKICRHGNSILSGGCGNW-NAQDNFYANTLDPIK-- 170 (319)
T ss_pred CCceEecCCCceEEEEechHH---Hhhhhhcc---ccccc-ccccceeecccEEecCCcceE-eeccceeeecccccc--
Confidence 566899999999999998762 22211111 11111 12233444555555530 00 123445667666321
Q ss_pred eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEE
Q 009203 314 ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSA 392 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~ 392 (540)
.....+. ....|.+++-+|...+++++|+.||.+.+||.+.... .......|..+++.+.|+| ++..|+++
T Consensus 171 ---t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 171 ---TLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----PVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred ---ccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc----hHHHHHHhhhhhhheeccCCCchheeEe
Confidence 1111111 1234999999996677788899999999999998753 3333356999999999998 67899999
Q ss_pred eCCCeEEEEECCC
Q 009203 393 GADKRIIGFDAGV 405 (540)
Q Consensus 393 ~~dg~i~iwd~~~ 405 (540)
+.||.+..||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999874
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=1.1e-08 Score=99.61 Aligned_cols=219 Identities=16% Similarity=0.191 Sum_probs=139.6
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~ 296 (540)
++-||...|+.+-|+|+....|++++.|-.|..||+.+.....-... .-| ..-..++|+-. +..+|+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~------~w~-s~asqVkwnyk~p~vlas----- 176 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS------SWR-SAASQVKWNYKDPNVLAS----- 176 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee------ccc-ccCceeeecccCcchhhh-----
Confidence 35699999999999998888999999999999999987653221111 112 33467999874 445555
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+....|.+||...+ ...+..+.+ |...|+.++|+...-..+.+++.||+|++||.......+... .....+
T Consensus 177 shg~~i~vwd~r~g--s~pl~s~K~---~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~----vtt~~p 247 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKG--STPLCSLKG---HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT----VTTNFP 247 (1081)
T ss_pred ccCCceEEEeccCC--CcceEEecc---cceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee----ccccCc
Confidence 68889999999977 345555655 567788999876556778999999999999998654322111 113345
Q ss_pred eeEEEeccCCCEEEE--EeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 377 VMGVAGMQQKQIVLS--AGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 377 v~~l~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
|.--.|.|-|.-.+. .-.+..+.+++.++ .-..|+..+...++
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n-----------------------------------~d~e~n~~~~~~pV 292 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN-----------------------------------SDLEWNVFDLNTPV 292 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccc-----------------------------------hhhhhccccCCcce
Confidence 555556664332221 11122233332221 22334444444333
Q ss_pred eeeccccccCccccCeEEEEEcCC----------CCEEEEEeCCCcEEEEeccC
Q 009203 455 HAFGWKQESSESQSALINQSWSPD----------GLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~----------g~~l~sg~~dg~i~iwd~~~ 498 (540)
+ .+.||...|....|-.. .-.|++=+.|..+++|-+.+
T Consensus 293 h------~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 293 H------TFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred e------eecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3 33566665555444321 12588999999999998874
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.2e-06 Score=75.46 Aligned_cols=260 Identities=17% Similarity=0.131 Sum_probs=149.0
Q ss_pred EEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcc
Q 009203 248 IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVK 326 (540)
Q Consensus 248 v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 326 (540)
|++.+..+-+...- .++|...|.+++|+|..+ ++..+ +.+..|.|.|+.+. .++..+.. .
T Consensus 175 v~~l~~~~fkssq~--------lp~~g~~IrdlafSp~~~GLl~~a----sl~nkiki~dlet~---~~vssy~a----~ 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQI--------LPGEGSFIRDLAFSPFNEGLLGLA----SLGNKIKIMDLETS---CVVSSYIA----Y 235 (463)
T ss_pred eEEeccCCcchhhc--------ccccchhhhhhccCccccceeeee----ccCceEEEEecccc---eeeeheec----c
Confidence 66666555443321 257888899999999887 67777 89999999999985 44444443 2
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec------cCCCEEEEEeCCCeEEE
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM------QQKQIVLSAGADKRIIG 400 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s------~~~~~l~~~~~dg~i~i 400 (540)
..+++++|.-++.++|..|...|.|.|||++..+.... .+.......+|..++.- +.|.+++....+ +..
T Consensus 236 ~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~--e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f 311 (463)
T KOG1645|consen 236 NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLM--ELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQF 311 (463)
T ss_pred CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHh--hhhhhhccCcceeecccCccccccccceEEeeehh--hhh
Confidence 67999999987788889999999999999998663111 11111123344444432 235555555443 556
Q ss_pred EECCCC----CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe------EEE-EECCCCcceeee----eccccccCc
Q 009203 401 FDAGVG----RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ------LRL-YDIRLRQTEIHA----FGWKQESSE 465 (540)
Q Consensus 401 wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------v~i-~d~~~~~~~~~~----~~~~~~~~~ 465 (540)
|.+... .++......+.++++.+++... ..|++.-.+.+ |-. -|-.++...... ++.... +-
T Consensus 312 ~ei~~s~~~~p~vlele~pG~cismqy~~~sn--h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~-kl 388 (463)
T KOG1645|consen 312 YEIVFSAECLPCVLELEPPGICISMQYHGVSN--HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQT-KL 388 (463)
T ss_pred hhhhccccCCCcccccCCCcceeeeeecCccc--eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccc-cc
Confidence 665432 2233344456677777766432 34444433211 111 011111111000 000000 00
Q ss_pred cccCeEEEEEcCCCCEEE-EEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC-C-CEEEEEEcCCcEEEEe
Q 009203 466 SQSALINQSWSPDGLYIT-SGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS-H-PLLISISSDLNIGLHK 539 (540)
Q Consensus 466 ~~~~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~-~-~~l~s~~~dg~v~iw~ 539 (540)
+.. ..+.-.++.++|+ +|++.+.+.+||..+ ...+.++... .+|.+++.... + .+|++-. |..++||+
T Consensus 389 ~t~--~ai~~~~~nn~iv~~gd~tn~lil~D~~s--~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 389 STT--QAIRAVEDNNYIVVVGDSTNELILQDPHS--FEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred ccc--cceeccccccEEEEecCCcceeEEeccch--hheeeecccC-cceeecceeecCCcchhhhee-cceEEEEe
Confidence 000 1112234555554 566678999999998 7777777643 67888876543 3 4666654 55677765
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=2.6e-08 Score=85.25 Aligned_cols=141 Identities=17% Similarity=0.205 Sum_probs=92.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeeccC-----ccEEEEeecCCCCCceEEEEE-----cCCCeEEEEECCCCccee
Q 009203 385 QKQIVLSAGADKRIIGFDAGVGRADFKHQIE-----SKCMSVLPNPCDFNLFMVQTG-----TPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 385 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~-----~~dg~v~i~d~~~~~~~~ 454 (540)
-++-++++..||.+.+++.+....+ .++.. ....++.-. + ..+.++ ..-+..+.|+++..+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~-~~~i~~~~~~~as~~~~~~--~---~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLAL-MSRIPSIHSGSASRKICRH--G---NSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhh-hhhcccccccccccceeec--c---cEEecCCcceEeeccceeeeccccccccc
Confidence 4677899999999999998862111 11111 111111111 1 122222 122345666666433222
Q ss_pred eeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC-CEEEEEEcC
Q 009203 455 HAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH-PLLISISSD 532 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~-~~l~s~~~d 532 (540)
.. ......|++++-+|.. ..+++|+.||.+.+||.++. ..+...+..|..+|+.+-|+|.. ..|+++++|
T Consensus 174 ~~-------~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 174 PS-------KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cc-------ccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence 11 1112248999999954 56778899999999999985 56777889999999999999955 689999999
Q ss_pred CcEEEEe
Q 009203 533 LNIGLHK 539 (540)
Q Consensus 533 g~v~iw~ 539 (540)
|.+..||
T Consensus 246 Gslw~wd 252 (319)
T KOG4714|consen 246 GSLWHWD 252 (319)
T ss_pred CcEEEEc
Confidence 9999997
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.79 E-value=1.5e-05 Score=72.92 Aligned_cols=222 Identities=14% Similarity=0.127 Sum_probs=137.6
Q ss_pred EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe-cCCCeEEEEeecCCCCCeEEEE
Q 009203 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH-PQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~s~~~~~~~d~~i~vw 305 (540)
-++.|.+..+.++++-...+.|..|+..++.... +.. .....+++. +++.++++. . +.+.++
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----------~~~~G~~~~~~~g~l~v~~-----~-~~~~~~ 65 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----------PGPNGMAFDRPDGRLYVAD-----S-GGIAVV 65 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES----------SSEEEEEEECTTSEEEEEE-----T-TCEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec----------CCCceEEEEccCCEEEEEE-----c-CceEEE
Confidence 3678888558888888888999999998765321 110 115678888 665555543 3 445666
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--------CcEEEEecCCCCCccccceeecccCCcce
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD--------HAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
|..+++.......... .......+.+++.| +|++.++.... |.|..++.. ++. ..+.. .-...
T Consensus 66 d~~~g~~~~~~~~~~~-~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~----~~~~~--~~~~p 136 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDG-GVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV----TVVAD--GLGFP 136 (246)
T ss_dssp ETTTTEEEEEEEEETT-CSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE----EEEEE--EESSE
T ss_pred ecCCCcEEEEeeccCC-CcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE----EEEec--Ccccc
Confidence 9887633222222211 11245689999999 89877776543 557777777 442 22221 34557
Q ss_pred eEEEeccCCCEEE-EEeCCCeEEEEECCCCCe------eee-eccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 378 MGVAGMQQKQIVL-SAGADKRIIGFDAGVGRA------DFK-HQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 378 ~~l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~------~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
+.|+|+|+++.|+ +-+..+.|..|++..... ... .... ...-.++.+.++ .+.++....+.|.++|..
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G---~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG---NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS----EEEEEETTTEEEEEETT
T ss_pred cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC---CEEEEEcCCCEEEEECCC
Confidence 8999999998776 556788899999864222 111 1112 246778888877 577777788999999988
Q ss_pred CCcceeeeeccccccCccccCeEEEEE-cCCCCEEEEE
Q 009203 449 LRQTEIHAFGWKQESSESQSALINQSW-SPDGLYITSG 485 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~sg 485 (540)
++. ...+ .+. ...+++++| .++.+.|+..
T Consensus 214 -G~~-~~~i----~~p--~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 214 -GKL-LREI----ELP--VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -SCE-EEEE----E-S--SSSEEEEEEESTTSSEEEEE
T ss_pred -ccE-EEEE----cCC--CCCEEEEEEECCCCCEEEEE
Confidence 443 2222 112 237899999 4666665543
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.72 E-value=1.8e-08 Score=62.26 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=35.8
Q ss_pred cccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 502 KPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 502 ~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
+++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46778899999999999999999999999999999997
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.72 E-value=3.5e-08 Score=60.97 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=32.7
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEE
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQ 252 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~ 252 (540)
.++.+|.+.|++|+|+|+ +.+|++|+.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 457899999999999996 99999999999999997
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=8.1e-06 Score=74.44 Aligned_cols=218 Identities=14% Similarity=0.120 Sum_probs=129.2
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH 324 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 324 (540)
+|+|..||..+++.+....... .... ..+. ..+++..++++ +.++.|..||..+++ .+-.......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-----~~~~-~~~~-~~~~~~~v~~~----~~~~~l~~~d~~tG~---~~W~~~~~~~ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-----GIGG-PVAT-AVPDGGRVYVA----SGDGNLYALDAKTGK---VLWRFDLPGP 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-----SCSS-EEET-EEEETTEEEEE----ETTSEEEEEETTTSE---EEEEEECSSC
T ss_pred CCEEEEEECCCCCEEEEEECCC-----CCCC-ccce-EEEeCCEEEEE----cCCCEEEEEECCCCC---EEEEeecccc
Confidence 6788889988888776663311 1111 1111 33356677777 799999999998883 2322222111
Q ss_pred cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203 325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG 404 (540)
Q Consensus 325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~ 404 (540)
.... ... .+..++.++.++.|+.+|..+++..|+.......... .........++..++++..++.|..+|++
T Consensus 68 ~~~~---~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 68 ISGA---PVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp GGSG---EEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred ccce---eee---cccccccccceeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecC
Confidence 1111 222 4456777778889999999999976653211101111 11222222247888888889999999999
Q ss_pred CCCeeeeeccCccE------------EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE
Q 009203 405 VGRADFKHQIESKC------------MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN 472 (540)
Q Consensus 405 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~ 472 (540)
+|+.+......... ....+. .+ .++.++.++.+..+|+.+++... .. . ...+..
T Consensus 141 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~v~~~~~~g~~~~~d~~tg~~~w-~~----~----~~~~~~ 206 (238)
T PF13360_consen 141 TGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG----RVYVSSGDGRVVAVDLATGEKLW-SK----P----ISGIYS 206 (238)
T ss_dssp TTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT----EEEEECCTSSEEEEETTTTEEEE-EE----C----SS-ECE
T ss_pred CCcEEEEeecCCCCCCcceeeecccccceEEE-CC----EEEEEcCCCeEEEEECCCCCEEE-Ee----c----CCCccC
Confidence 99987665442211 222222 22 55566666653334999887442 11 1 111222
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 473 QSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 473 ~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
....++..|++++.++.|..||+.+
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTT
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCC
Confidence 1345778888888999999999998
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=4.7e-07 Score=89.77 Aligned_cols=184 Identities=16% Similarity=0.121 Sum_probs=131.0
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG 406 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 406 (540)
..+.|++++ +..|+-|+.+|.|++++....- ... ..|... ..+|.++++|+.||.|.|..+-+.
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-----~~~--~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-----KTN--FDHSSS------ILEGEYVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCcc-----ccc--cccccc------ccCCceEEEecCCCcEEEeeccCC
Confidence 457777774 4789999999999999987542 111 114333 568999999999999999999999
Q ss_pred CeeeeeccCccEEEEeecCC--CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203 407 RADFKHQIESKCMSVLPNPC--DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS 484 (540)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 484 (540)
+....+.....+.+++++|+ ......+++|+..| +.++.-+-.+..... .+....++|.++.| .|+++|-
T Consensus 104 ~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-----~l~~~eG~I~~i~W--~g~lIAW 175 (846)
T KOG2066|consen 104 DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-----VLSEGEGPIHSIKW--RGNLIAW 175 (846)
T ss_pred ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-----eeecCccceEEEEe--cCcEEEE
Confidence 98888999999999999997 33336889999888 777765432221111 23456789999999 6889999
Q ss_pred EeCCCcEEEEeccCCCCccccccccccc------ceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 485 GSADPVIHLFDIRYSANKPSQSIRAHQK------RVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 485 g~~dg~i~iwd~~~~~~~~~~~~~~h~~------~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
++.+| |+|||+.. +..+..+..... .-..+.|.++.+++ . |...+|+|..
T Consensus 176 and~G-v~vyd~~~--~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~ 231 (846)
T KOG2066|consen 176 ANDDG-VKVYDTPT--RQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICS 231 (846)
T ss_pred ecCCC-cEEEeccc--cceeeccCCCCCCCCcccCCCceEecCCCeEE-E-ecCCeEEEEE
Confidence 98888 99999997 444444432222 23567887765433 3 3444566653
No 308
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.66 E-value=2.8e-05 Score=71.46 Aligned_cols=289 Identities=12% Similarity=0.142 Sum_probs=157.9
Q ss_pred cccccceEEecCCCCeEEEeccc------hhcccccCceEEEEEecCCCcEEEEEe----------CCceEEEEEcCCCC
Q 009203 194 HRELIPLVRTSASPATIHCHTSN------HVSSLHKRKLRSLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRG 257 (540)
Q Consensus 194 ~~~~v~~~~~~~~d~~i~~~~~~------~~~~~h~~~V~~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~ 257 (540)
|+-+|....+......+.++|+. .+-.|. .-.+..+|| ++.+.+++ ..-.|.+||..+..
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~---~~~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~ 78 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGF---LGNVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDTQTLS 78 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEES---SEEEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEETTTTE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeeccc---CCceeECCC-CCEEEEEEEEEeccccccceeEEEEEecCcCc
Confidence 44455555554445566666654 122233 233667896 77666642 33469999999876
Q ss_pred CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC
Q 009203 258 SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW 337 (540)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 337 (540)
....+....... .........++++.||+++++... +-...|.|-|+... +.+..+.. .+ +.. .-|.
T Consensus 79 ~~~EI~iP~k~R-~~~~~~~~~~~ls~dgk~~~V~N~--TPa~SVtVVDl~~~---kvv~ei~~----PG-C~~--iyP~ 145 (342)
T PF06433_consen 79 PTGEIEIPPKPR-AQVVPYKNMFALSADGKFLYVQNF--TPATSVTVVDLAAK---KVVGEIDT----PG-CWL--IYPS 145 (342)
T ss_dssp EEEEEEETTS-B---BS--GGGEEE-TTSSEEEEEEE--SSSEEEEEEETTTT---EEEEEEEG----TS-EEE--EEEE
T ss_pred ccceEecCCcch-heecccccceEEccCCcEEEEEcc--CCCCeEEEEECCCC---ceeeeecC----CC-EEE--EEec
Confidence 655554432100 001123456789999998887632 56678999999875 55555543 12 222 2342
Q ss_pred CCCEEEEEecCCcEEEEecC-CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--ecc
Q 009203 338 ENPCFATGGSDHAVVLWSER-DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQI 414 (540)
Q Consensus 338 ~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~ 414 (540)
.+..|.+-+.||.+.-..+. .|+...+...+...........-++...+..++..+.+|.|+-.|+........ ...
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 44568888889999988888 444321111111111111222334455566677788999999999886654221 110
Q ss_pred -----------CccEEEEeecCCCCCceEEEEEcCCC-------eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 415 -----------ESKCMSVLPNPCDFNLFMVQTGTPGR-------QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 415 -----------~~~~~~~~~~~~~~~~~~l~~~~~dg-------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
.+...-+++++.......|.-.+.++ .|.+||+.+++...+.- -..++.+|..+
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--------l~~~~~Si~Vs 297 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--------LEHPIDSIAVS 297 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--------EEEEESEEEEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--------CCCccceEEEc
Confidence 11112344454332212222222222 48888998887655431 12357789999
Q ss_pred CCCC-EEEEE-eCCCcEEEEeccCCCCcccccccc
Q 009203 477 PDGL-YITSG-SADPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 477 p~g~-~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
.+.+ +|++. ..++.|.+||..+ ++.+.++..
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~t--Gk~~~~~~~ 330 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAAT--GKLVRSIEQ 330 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT----EEEEE--
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcC--CcEEeehhc
Confidence 8776 55443 4679999999998 777777663
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=1.6e-07 Score=83.85 Aligned_cols=142 Identities=11% Similarity=0.116 Sum_probs=104.5
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--ccccceeecccCC
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED--SWKPKALHRNLHS 374 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~ 374 (540)
+.+..|.+-|+.++.. +.+. .++.|.++.|.. .++++..|..+|.|..+|++.+.. .|.... ..|.
T Consensus 231 G~sqqv~L~nvetg~~----qsf~----sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r---lyh~ 298 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQ----QSFQ----SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR---LYHD 298 (425)
T ss_pred cccceeEEEEeecccc----cccc----cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEE---EEcC
Confidence 6788899999998732 2232 246699999998 889999999999999999987622 222333 3389
Q ss_pred cceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCe---eeeeccCccEEEEeecCC--CCCceEEEEEcCCCeEEEEECC
Q 009203 375 SAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRA---DFKHQIESKCMSVLPNPC--DFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 375 ~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
+.|+++..-. ++++|++.+.+|.|++||++.-++ +..+. +++...++.|. +.....+++++.|...+||.++
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecc
Confidence 9999998766 789999999999999999997666 44433 33333333221 1111478889999999999999
Q ss_pred CCcc
Q 009203 449 LRQT 452 (540)
Q Consensus 449 ~~~~ 452 (540)
.+..
T Consensus 377 ~ghL 380 (425)
T KOG2695|consen 377 SGHL 380 (425)
T ss_pred cCce
Confidence 8764
No 310
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=4.6e-06 Score=81.81 Aligned_cols=164 Identities=13% Similarity=0.078 Sum_probs=109.9
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
|.=-+++. .+.+++.|+.-|.+.+|+-..+...... . .+-...+..+..+++..++|.| +..|.|.++
T Consensus 36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~-~------~~~~~~~~~~~vs~~e~lvAag----t~~g~V~v~ 103 (726)
T KOG3621|consen 36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLK-N------EGATGITCVRSVSSVEYLVAAG----TASGRVSVF 103 (726)
T ss_pred EEEEEeec-CCceEEEecccceEEEEecCchhhhccc-c------cCccceEEEEEecchhHhhhhh----cCCceEEee
Confidence 33334444 4789999999999999998776532211 1 2333445667778888888888 999999999
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC-CCccccceeecccCCcceeEEEecc
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA-EDSWKPKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~ 384 (540)
.++..........-.....|+..|++++|++ ++..+++|...|.|..-.+... ......+.+ ....+.|-.+.+..
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i--l~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI--LSEDSEIVQLDYLQ 180 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee--eccCcceEEeeccc
Confidence 9987655555555444445788999999999 9999999999999998888772 211112222 22556777777763
Q ss_pred CCCEEEEEeCCCeEEEEECCCCC
Q 009203 385 QKQIVLSAGADKRIIGFDAGVGR 407 (540)
Q Consensus 385 ~~~~l~~~~~dg~i~iwd~~~~~ 407 (540)
+.+|++... ...+++++.+.
T Consensus 181 -~~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 181 -SYLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred -ceehHhhhh--hhheeecchhH
Confidence 344443332 34456665443
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5e-07 Score=83.51 Aligned_cols=207 Identities=8% Similarity=-0.001 Sum_probs=145.7
Q ss_pred cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEEC
Q 009203 325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDA 403 (540)
Q Consensus 325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~ 403 (540)
|.+.|+.+... -.+++.+++.||.++.|--..-..+ -.......|.+.|.+++.+.+|.++.+++. |..++++|+
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGv--EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGV--EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccce--eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 55666666544 5789999999999999976542211 112222458888999999999999999777 999999999
Q ss_pred CCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE
Q 009203 404 GVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY 481 (540)
Q Consensus 404 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 481 (540)
.+-..+..... -.....+..++.+.-..+-++...++.+.++|-....+....+ -.-|..+|..+.+.+-+..
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f-----kklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF-----KKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee-----cccccCceEEEEeeccccc
Confidence 87554432222 2233344444443332334445567899999988776554432 2458899999999999999
Q ss_pred EEEEeCCCcEEEEeccCC----CCccccc---------ccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 482 ITSGSADPVIHLFDIRYS----ANKPSQS---------IRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 482 l~sg~~dg~i~iwd~~~~----~~~~~~~---------~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+++....|.|.-|..... ..+.... +.-......++.|+|+|..+.+-+.|..|+++++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 999999999999998731 1111111 1223446789999999999999999999999864
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=1.8e-05 Score=82.41 Aligned_cols=204 Identities=9% Similarity=0.128 Sum_probs=130.7
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
+.|.++.|..++..|+.+ ...|.|.+-|..+... .++.. -.+.|.+++|+| |...++..+.++++.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~----~~~G~iilvd~et~~~-eivg~------vd~GI~aaswS~-Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVI----TALGDIILVDPETLEL-EIVGN------VDNGISAASWSP-DEELLALITGRQTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEE----ecCCcEEEEcccccce-eeeee------ccCceEEEeecC-CCcEEEEEeCCcEEEEE
Confidence 679999999999988888 8999999998887521 22222 235699999999 99999988887877654
Q ss_pred ec----CCCCCc--------------cccc--eeec----------c---------cCCcceeEEEeccCCCEEEEE---
Q 009203 355 SE----RDAEDS--------------WKPK--ALHR----------N---------LHSSAVMGVAGMQQKQIVLSA--- 392 (540)
Q Consensus 355 d~----~~~~~~--------------~~~~--~~~~----------~---------~~~~~v~~l~~s~~~~~l~~~--- 392 (540)
+- -..+.+ |... .+.. . ...+.=+++.|--||.++++.
T Consensus 137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 32 111100 0000 0000 0 011122458898899999883
Q ss_pred --eCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEE---cCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203 393 --GADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTG---TPGRQLRLYDIRLRQTEIHAFGWKQESSES 466 (540)
Q Consensus 393 --~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 466 (540)
...+.|++||.+ |..-.. ......-.+++|-|.| ..+++- ..|+.|.+|.-+....--..+ .....
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg---s~iA~iq~~~sd~~IvffErNGL~hg~f~l----~~p~d 288 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG---SLIAAIQCKTSDSDIVFFERNGLRHGEFVL----PFPLD 288 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcccccccceeecCCC---CeEeeeeecCCCCcEEEEecCCcccccccc----CCccc
Confidence 223789999988 443222 2333445678888877 455543 456679999877544321111 11222
Q ss_pred ccCeEEEEEcCCCCEEEE---EeCCCcEEEEeccC
Q 009203 467 QSALINQSWSPDGLYITS---GSADPVIHLFDIRY 498 (540)
Q Consensus 467 ~~~v~~~~~sp~g~~l~s---g~~dg~i~iwd~~~ 498 (540)
...|..++|+.++..||+ ......|++|-+.+
T Consensus 289 e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 289 EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 334899999999999997 44555699999886
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=0.00018 Score=62.42 Aligned_cols=112 Identities=12% Similarity=-0.011 Sum_probs=77.2
Q ss_pred ecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC
Q 009203 232 NPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK 311 (540)
Q Consensus 232 spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~ 311 (540)
.+|...+++.|+..+.+.--|..++......... ..|.+-+.- -|++++.| ...|.+++.+..+|.
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg---------~RiE~sa~v-vgdfVV~G----Cy~g~lYfl~~~tGs 84 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG---------VRIECSAIV-VGDFVVLG----CYSGGLYFLCVKTGS 84 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhhC---------ceeeeeeEE-ECCEEEEE----EccCcEEEEEecchh
Confidence 3455678888898888888888888765543221 112222222 47788888 899999999999985
Q ss_pred CceeEEeecCCCCcccceeEE-EEeCCCCCEEEEEecCCcEEEEecCCCCCcccc
Q 009203 312 GRACVTFLDDKPHVKGIINSI-IFLPWENPCFATGGSDHAVVLWSERDAEDSWKP 365 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 365 (540)
.-......+. |.+- ...+ ++.++..|+.|++.+..|..+..++++.
T Consensus 85 ~~w~f~~~~~-------vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 85 QIWNFVILET-------VKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred heeeeeehhh-------hccceEEcC-CCceEEEecCCCcEEEecccccceEEec
Confidence 4333433332 3322 2344 8899999999999999999988776653
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=3.4e-06 Score=84.11 Aligned_cols=110 Identities=19% Similarity=0.308 Sum_probs=80.8
Q ss_pred eEEEEEecCCCcEEEEEeC----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 226 LRSLSLNPVNEQLFVTSAL----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
-+-.+|+| ...++|.++. .|.|.||- ++++....... +-| +++++|+|..-.|+.+ -.-|.
T Consensus 18 sti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~------P~h---atSLCWHpe~~vLa~g----we~g~ 82 (1416)
T KOG3617|consen 18 STISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY------PVH---ATSLCWHPEEFVLAQG----WEMGV 82 (1416)
T ss_pred ccccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCccccc------cee---hhhhccChHHHHHhhc----cccce
Confidence 34457888 5788888763 47888874 34443232211 222 5679999998889998 88999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER 357 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 357 (540)
+.+|...+. +.-+... .|..+|..+.|+| +|..++++..-|.|.+|...
T Consensus 83 ~~v~~~~~~---e~htv~~---th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 83 SDVQKTNTT---ETHTVVE---THPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEEecCCc---eeeeecc---CCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 999998764 2222222 4778899999999 99999999999999999876
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=2.9e-06 Score=84.30 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=126.7
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
+.++|++++ +++|+-|..+|.|++.+....- .+. ..|... ..+|.++++| +.||.|.
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~--------~~~s~~------~~~Gey~asC----S~DGkv~ 96 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTN--------FDHSSS------ILEGEYVASC----SDDGKVV 96 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCcc--ccc--------cccccc------ccCCceEEEe----cCCCcEE
Confidence 568888886 5689999999999999986532 111 122222 5679999999 9999999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCC----CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW----ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
|-.+.+.+. ...+.. ..++.+++++|+ ....+++|+..| +.++.-+=-.. ..........++|.+
T Consensus 97 I~sl~~~~~---~~~~df----~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---k~~v~l~~~eG~I~~ 165 (846)
T KOG2066|consen 97 IGSLFTDDE---ITQYDF----KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---KDSVVLSEGEGPIHS 165 (846)
T ss_pred EeeccCCcc---ceeEec----CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---ccceeeecCccceEE
Confidence 999987633 333332 357999999993 256799999888 77764332111 112222346789999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
+.|. |++++-++.+| |++||+..++.+.....+ .....+.|.+.. .|+.|-. .+|+|..++
T Consensus 166 i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~----~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 166 IKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED----RLVIGWG-DSVKICSIK 233 (846)
T ss_pred EEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC----eEEEecC-CeEEEEEEe
Confidence 9995 89999888876 899999988776543322 233456676664 5666544 478888887
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=3.1e-07 Score=82.05 Aligned_cols=155 Identities=12% Similarity=0.131 Sum_probs=111.7
Q ss_pred EEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC--CceeEE
Q 009203 240 VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK--GRACVT 317 (540)
Q Consensus 240 ~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~--~~~~~~ 317 (540)
++.+.+-.|-+-|++++-. ..+ .....|.++.|...+++++.| ..+|.|...|++... ...+.+
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf---------~sksDVfAlQf~~s~nLv~~G----cRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSF---------QSKSDVFALQFAGSDNLVFNG----CRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred ecccccceeEEEEeecccc-ccc---------ccchhHHHHHhcccCCeeEec----ccCCcEEEEEeeecccCCCcceE
Confidence 4455567788889887642 122 234668899999989999999 999999999998642 123444
Q ss_pred eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE--EEeccCCCEEEEEeCC
Q 009203 318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG--VAGMQQKQIVLSAGAD 395 (540)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~--l~~s~~~~~l~~~~~d 395 (540)
.+. |.+.|+++.....++..|++.+.+|+|++||.+.-++... .....+|...-.- +...+....+++++.|
T Consensus 294 rly----h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~--V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 294 RLY----HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS--VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred EEE----cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc--eeeeecccccccccccccccccceEEEccCe
Confidence 443 5678999887765788999999999999999997765322 2333455433222 2335567788899999
Q ss_pred CeEEEEECCCCCeeeeecc
Q 009203 396 KRIIGFDAGVGRADFKHQI 414 (540)
Q Consensus 396 g~i~iwd~~~~~~~~~~~~ 414 (540)
-..+||.++.|..+.....
T Consensus 368 cytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eEEEEEecccCceeeccCC
Confidence 9999999999988665443
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.57 E-value=8.2e-08 Score=92.53 Aligned_cols=208 Identities=16% Similarity=0.190 Sum_probs=135.9
Q ss_pred cCceEEEEEecCCC-cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecCCCCC
Q 009203 223 KRKLRSLSLNPVNE-QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADSGDS 300 (540)
Q Consensus 223 ~~~V~~l~~spd~~-~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~~d~ 300 (540)
...+.|+++.-+.. .+++.|..+|.|-+-.+...... . ....++|....++++|++ |.++||+|...-..|.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s-~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----S-AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----c-ceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 35678888776433 58899999999999887654322 1 111268888999999998 4567777633334678
Q ss_pred eEEEEecCCC--CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 301 QISVLNLNKT--KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 301 ~i~vwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
.+.|||+.+. ..........+ ......+++|.. +..++.+|.....+.++|++.... ... ...+..+.
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~---~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~----~~~--svnTk~vq 199 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSS---TLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLD----SVS--SVNTKYVQ 199 (783)
T ss_pred CccceecccccCCCccccccccc---cccCcccccccc-Ccchhhcccccchhhhhhhhhhhh----hhh--hhhhhhcc
Confidence 8999999976 22111222211 123466888986 888999999888999999985321 111 11334566
Q ss_pred EEEecc-CCCEEEEEeCCCeEEEEE-CCCCCe-eeeec-----cCccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCC
Q 009203 379 GVAGMQ-QKQIVLSAGADKRIIGFD-AGVGRA-DFKHQ-----IESKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRL 449 (540)
Q Consensus 379 ~l~~s~-~~~~l~~~~~dg~i~iwd-~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~ 449 (540)
.+...| .++++++-. ||.|.+|| .++-+. +.... .......++|.|.... .+++. -..++|++||+..
T Consensus 200 G~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--hhhhhccCcceEEEecccc
Confidence 777888 677776554 99999999 443222 22211 1235788999997733 44444 4557899999874
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=4.3e-06 Score=83.42 Aligned_cols=112 Identities=13% Similarity=0.197 Sum_probs=87.2
Q ss_pred eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC
Q 009203 279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD 358 (540)
Q Consensus 279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 358 (540)
-..|+|...++++++......|.|.||- ++|....-+.. .-.+++++|+| ..-.|+.|-.-|.+.+|...+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-------P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-------PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-------ceehhhhccCh-HHHHHhhccccceeEEEecCC
Confidence 4679999999999876667789999984 33432222211 12367899999 888899999999999999887
Q ss_pred CCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203 359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG 404 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~ 404 (540)
.+. ..+ ...|..+|..+.||++|..++++..-|.+.+|...
T Consensus 91 ~e~----htv-~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TET----HTV-VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cee----eee-ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 663 222 24599999999999999999999999999999876
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=8.8e-06 Score=74.50 Aligned_cols=251 Identities=13% Similarity=0.129 Sum_probs=143.5
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeec
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTA 295 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~ 295 (540)
+++.+|...|..++|+|.+.-++..++.+..|+|.|+.+......+. .| ..+++++|.-|.. +|+.|
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--------a~-~~~wSC~wDlde~h~IYaG--- 254 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--------AY-NQIWSCCWDLDERHVIYAG--- 254 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee--------cc-CCceeeeeccCCcceeEEe---
Confidence 46789999999999999755589999999999999999877665552 33 6799999987665 66666
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-----CCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-----ENPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
..+|.|.|||++..... +..+.+. ....+|..++.-+. .+.+++....+ +..|.+......+ .....
T Consensus 255 -l~nG~VlvyD~R~~~~~--~~e~~a~-~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~--p~vle 326 (463)
T KOG1645|consen 255 -LQNGMVLVYDMRQPEGP--LMELVAN-VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL--PCVLE 326 (463)
T ss_pred -ccCceEEEEEccCCCch--Hhhhhhh-hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC--Ccccc
Confidence 89999999999876432 1111110 01233444433221 34445544443 5567665433211 11122
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCC-C------eEE-EEECCCCCeeeeecc---CccE-----EEEeecCCCCCceEEE
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGAD-K------RII-GFDAGVGRADFKHQI---ESKC-----MSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~d-g------~i~-iwd~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~l~ 434 (540)
.+..+.+.++.+.+-.+.++..... . .+- --|.+.|..+..... ++.. ....+.+.+.+ .++.
T Consensus 327 le~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn-~iv~ 405 (463)
T KOG1645|consen 327 LEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN-YIVV 405 (463)
T ss_pred cCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc-EEEE
Confidence 2345666777776655555544332 1 111 122233433322110 1110 11122222212 5667
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CC-CEEEEEeCCCcEEEEecc
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DG-LYITSGSADPVIHLFDIR 497 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g-~~l~sg~~dg~i~iwd~~ 497 (540)
+|...+.+.+||..+.+..... . -..+|..++... +| .+|++- .|..++||..+
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l-------~-~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTL-------A-LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred ecCCcceeEEeccchhheeeec-------c-cCcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 7778889999999987754322 1 124666665543 33 455555 46668888755
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=4.3e-06 Score=84.19 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=130.4
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK 364 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 364 (540)
++..++.| +....+..+|+++.+. .+.... ..+.|.-|+. +++.+.+|...|+|.+-|.++.+.
T Consensus 146 ~~~~~i~G----g~Q~~li~~Dl~~~~e---~r~~~v---~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~--- 209 (1118)
T KOG1275|consen 146 GPSTLIMG----GLQEKLIHIDLNTEKE---TRTTNV---SASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFET--- 209 (1118)
T ss_pred CCcceeec----chhhheeeeeccccee---eeeeec---cCCceEEEEe---cCcEEEeecccceEEeecCCcCce---
Confidence 44566666 7777888899997632 222221 1223555555 778999999999999999998764
Q ss_pred cceeecccCCcceeEEEeccCCCEEEEEeC---------CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEE
Q 009203 365 PKALHRNLHSSAVMGVAGMQQKQIVLSAGA---------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQT 435 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 435 (540)
...+ ..|++.|.++.. .|+.|++|+. |..|++||++.-+.+...+......=+.|.|.-. ..+++
T Consensus 210 iht~--~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~--t~~~V 283 (1118)
T KOG1275|consen 210 IHTF--DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLT--TRLAV 283 (1118)
T ss_pred eeee--eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccccc--ceEEE
Confidence 2333 569999988776 5899999875 5568999999877765554444444445566443 36788
Q ss_pred EcCCCeEEEEECCCCcce-eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 436 GTPGRQLRLYDIRLRQTE-IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 436 ~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
++..|...+-|..+...+ ...+ ........+..+++|++|..|+.|..+|.|.+|.-.
T Consensus 284 ~S~sGq~q~vd~~~lsNP~~~~~----~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 284 TSQSGQFQFVDTATLSNPPAGVK----MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred EecccceeeccccccCCCcccee----EEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 888999999995443322 1111 112234558999999999999999999999999833
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.47 E-value=0.0001 Score=71.29 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=135.8
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEe-ecCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTF-LDDKP 323 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~ 323 (540)
.+.+.|||+.++....... ....+....|+|+|+.|+.. .++.|.+++..++ ...+. ..+..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~---------~~~~~~~~~~sP~g~~~~~v-----~~~nly~~~~~~~---~~~~lT~dg~~ 84 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP---------PPPKLQDAKWSPDGKYIAFV-----RDNNLYLRDLATG---QETQLTTDGEP 84 (353)
T ss_dssp EEEEEEEETTTTEEEESS----------EETTBSEEEE-SSSTEEEEE-----ETTEEEEESSTTS---EEEESES--TT
T ss_pred ceeEEEEecCCCceEECcC---------CccccccceeecCCCeeEEE-----ecCceEEEECCCC---CeEEeccccce
Confidence 4678899999864322111 13557889999999999997 6789999998765 22221 11100
Q ss_pred C-------------cccceeEEEEeCCCCCEEEEEecC-C-----------------------------------cEEEE
Q 009203 324 H-------------VKGIINSIIFLPWENPCFATGGSD-H-----------------------------------AVVLW 354 (540)
Q Consensus 324 ~-------------~~~~v~~~~~~p~~~~~l~s~~~d-g-----------------------------------~i~iw 354 (540)
. .-+.-..+-|+| +++.|+....| . .+.|+
T Consensus 85 ~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~ 163 (353)
T PF00930_consen 85 GIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVV 163 (353)
T ss_dssp TEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEE
T ss_pred eEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEE
Confidence 0 011235688999 88888865432 1 24456
Q ss_pred ecCCCCCcccccee-ecccCCcceeEEEeccCCCEEEEEeC--C---CeEEEEECCCCCeeeee--ccCccE---EEEee
Q 009203 355 SERDAEDSWKPKAL-HRNLHSSAVMGVAGMQQKQIVLSAGA--D---KRIIGFDAGVGRADFKH--QIESKC---MSVLP 423 (540)
Q Consensus 355 d~~~~~~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~~~--d---g~i~iwd~~~~~~~~~~--~~~~~~---~~~~~ 423 (540)
|+.+++... .... ........+..+.|.+++..|+..-. + ..+.++|..++...... .....+ ....+
T Consensus 164 ~~~~~~~~~-~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 164 DLASGKTTE-LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp ESSSTCCCE-E---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred ECCCCcEEE-eeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 666554310 0000 00123556888999999884444332 2 24777888776653322 122211 12333
Q ss_pred c-CCCCCceEEEEEcCCCe--EEEEECCCCcceeeeeccccccCccccCeEE-EEEcCCCCEEE-EEeCC--CcEEEEec
Q 009203 424 N-PCDFNLFMVQTGTPGRQ--LRLYDIRLRQTEIHAFGWKQESSESQSALIN-QSWSPDGLYIT-SGSAD--PVIHLFDI 496 (540)
Q Consensus 424 ~-~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~-sg~~d--g~i~iwd~ 496 (540)
. +++. .++.....+|. |.+++...+.. . .+......|+. +.|+++++.|. ++..+ +.-.+|.+
T Consensus 243 ~~~~~~--~~l~~s~~~G~~hly~~~~~~~~~--~------~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 243 LGPDGN--EFLWISERDGYRHLYLYDLDGGKP--R------QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp -TTTSS--EEEEEEETTSSEEEEEEETTSSEE--E------ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred ccCCCC--EEEEEEEcCCCcEEEEEcccccce--e------ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 2 3332 35555557765 44555554432 1 22334456655 67888877654 55442 34555555
Q ss_pred cCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 497 RYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 497 ~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
....+..+..+....+.-..+.|||+|++++-.+
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 4321222333333222226899999999876544
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.47 E-value=0.00012 Score=72.16 Aligned_cols=268 Identities=14% Similarity=0.052 Sum_probs=142.8
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccC-CCCC-CCCce-eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCL-SPKH-RRWPE-DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~h-~~~V~-~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
.+++++.+|.+.-+|..+++...+........ .... ...+. .+.. ++..++.+ +.++.+..+|..+++...
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~----~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIG----SEKGQVYALNAEDGEVAW 144 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEE----cCCCEEEEEECCCCCCcc
Confidence 45555667777777777777655543221000 0000 00111 1122 34566777 789999999999885432
Q ss_pred eEEeecCCCCcccceeE-EEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe
Q 009203 315 CVTFLDDKPHVKGIINS-IIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG 393 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 393 (540)
.... . +.+.+ ... .+..++.++.++.|.-+|..+++..|+...-..........+-.. .+..++.++
T Consensus 145 ~~~~-~------~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~ 212 (394)
T PRK11138 145 QTKV-A------GEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGG 212 (394)
T ss_pred cccC-C------CceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEc
Confidence 2221 1 11211 122 234566778889999999999997765542110000000001111 134577788
Q ss_pred CCCeEEEEECCCCCeeeeeccCcc--------EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc
Q 009203 394 ADKRIIGFDAGVGRADFKHQIESK--------CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE 465 (540)
Q Consensus 394 ~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 465 (540)
.+|.+..+|..+|+.+........ ...+...|.-.. ..++.++.+|.+..+|..+++..... .+.
T Consensus 213 ~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~-----~~~- 285 (394)
T PRK11138 213 DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKR-----EYG- 285 (394)
T ss_pred CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEee-----cCC-
Confidence 899999999999887655332111 001111221001 25666778899999999988754321 111
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccc-cceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 466 SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ-KRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 466 ~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
....+.. .+..|+.++.+|.+..+|..+ ++.+-....-. ....+... .+.+|+.++.||.|.+.|
T Consensus 286 ---~~~~~~~--~~~~vy~~~~~g~l~ald~~t--G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 286 ---SVNDFAV--DGGRIYLVDQNDRVYALDTRG--GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred ---CccCcEE--ECCEEEEEcCCCeEEEEECCC--CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 1111222 466777788899999999987 43322211100 11111222 244667777888877665
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=2.5e-07 Score=92.33 Aligned_cols=212 Identities=15% Similarity=0.164 Sum_probs=140.2
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH- 349 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg- 349 (540)
..|....+|++|+-+.++|+.| +..|.|+++++.+|.. ..... .|.+.|+.+.-+- +|..+++.+.-.
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG----~~~Geik~~nv~sG~~---e~s~n---cH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVG----SHAGEIKIFNVSSGSM---EESVN---CHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred hccccceeeEEeecCCceEEee----eccceEEEEEccCccc---ccccc---ccccccccccccC-CcceeeeeccccC
Confidence 3566778999999999999999 9999999999999843 22222 4778899998888 777766654432
Q ss_pred -cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----CccEEEEee
Q 009203 350 -AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----ESKCMSVLP 423 (540)
Q Consensus 350 -~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~ 423 (540)
-..+|++...-. ... .-..-.++.|+.....-+.|+......+||+.++..+.++-. ...-....|
T Consensus 1167 PlsaLW~~~s~~~---~~H-----sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1167 PLSALWDASSTGG---PRH-----SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred chHHHhccccccC---ccc-----cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 467899875221 111 123456788876555555666666899999999887654221 223356788
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP 503 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~ 503 (540)
+|.+ .+++- || .+||++..+. ++.|. ... .-..-.|+|.|.-++..++ |||+++ .+.
T Consensus 1239 sP~D---~LIln---dG--vLWDvR~~~a-Ih~FD------~ft-~~~~G~FHP~g~eVIINSE-----IwD~RT--F~l 1295 (1516)
T KOG1832|consen 1239 SPCD---TLILN---DG--VLWDVRIPEA-IHRFD------QFT-DYGGGGFHPSGNEVIINSE-----IWDMRT--FKL 1295 (1516)
T ss_pred CCCc---ceEee---Cc--eeeeeccHHH-Hhhhh------hhe-ecccccccCCCceEEeech-----hhhhHH--HHH
Confidence 9987 34442 33 5899997643 22221 111 1112369999999988765 999997 666
Q ss_pred cccccccccceeEEEEcCCCCEE
Q 009203 504 SQSIRAHQKRVFKAVWHYSHPLL 526 (540)
Q Consensus 504 ~~~~~~h~~~i~~l~~s~~~~~l 526 (540)
++....-. -..+.|+..|..+
T Consensus 1296 Lh~VP~Ld--qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1296 LHSVPSLD--QCAVTFNSTGDVM 1316 (1516)
T ss_pred HhcCcccc--ceEEEeccCccch
Confidence 66554322 2456677776644
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=7.2e-05 Score=68.03 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=113.9
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEe-----CCceEEEEEcC-CCCCcceeecccccCCCCCCCCceeEEEecCCCeEE
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSA-----LDGVIRLWQLQ-SRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLF 290 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~-----~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 290 (540)
+.|.|| -.|||| |++|.+.- ..|.|-|||.. .-..+..+ ..|.-....+.+.|||+.|+
T Consensus 50 RHFyGH------g~fs~d-G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~--------~s~GIGPHel~l~pDG~tLv 114 (305)
T PF07433_consen 50 RHFYGH------GVFSPD-GRLLYTTENDYETGRGVIGVYDAARGYRRIGEF--------PSHGIGPHELLLMPDGETLV 114 (305)
T ss_pred CEEecC------EEEcCC-CCEEEEeccccCCCcEEEEEEECcCCcEEEeEe--------cCCCcChhhEEEcCCCCEEE
Confidence 445677 579996 88888864 35889999998 33333333 34444456899999999888
Q ss_pred EEe-----e---------cCCCCCeEEEEecCCCCCceeEEeecC-CCCcccceeEEEEeCCCCCEEEEEecCCc-----
Q 009203 291 SAH-----T---------ADSGDSQISVLNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPWENPCFATGGSDHA----- 350 (540)
Q Consensus 291 s~~-----~---------~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~----- 350 (540)
++. . -+..+..+.+.|..++. .+....- ...|.-.|..+++.+ ++..++..-..|.
T Consensus 115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~---ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~ 190 (305)
T PF07433_consen 115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA---LLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAP 190 (305)
T ss_pred EEcCCCccCcccCceecChhhcCCceEEEecCCCc---eeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccC
Confidence 871 0 01234455566666652 2222111 123556799999998 7766665544332
Q ss_pred --EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeeeeccCccEEEEeecCCC
Q 009203 351 --VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCD 427 (540)
Q Consensus 351 --i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (540)
|-+++....-.......-....-...+-+|++++++.++++.+ ..+.+.+||..++..+...... .++.++..+.+
T Consensus 191 PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~ 269 (305)
T PF07433_consen 191 PLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG 269 (305)
T ss_pred CeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc
Confidence 3344433321100000000122457899999999998775554 5778999999999876554433 34455555554
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=6.6e-05 Score=75.57 Aligned_cols=213 Identities=13% Similarity=0.199 Sum_probs=135.1
Q ss_pred EEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-----cEEEE
Q 009203 280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-----AVVLW 354 (540)
Q Consensus 280 ~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-----~i~iw 354 (540)
-+|++.+..++.| +.+|.|.+.+-. ...++.+.... .+.|..+.... ...+|++-+.|+ .|+||
T Consensus 29 sc~~s~~~~vvig----t~~G~V~~Ln~s----~~~~~~fqa~~--~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 29 SCCSSSTGSVVIG----TADGRVVILNSS----FQLIRGFQAYE--QSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred eEEcCCCceEEEe----eccccEEEeccc----ceeeehheecc--hhhhhHhhccc-CceEEEEEeecCCCCceEEEEe
Confidence 3567888899999 999998887654 23334444422 12344444433 446777776664 48999
Q ss_pred ecCCCCCcccccee------e--cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC--C---CCeeeeeccCccEEEE
Q 009203 355 SERDAEDSWKPKAL------H--RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG--V---GRADFKHQIESKCMSV 421 (540)
Q Consensus 355 d~~~~~~~~~~~~~------~--~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~--~---~~~~~~~~~~~~~~~~ 421 (540)
|++..+....+..+ . ......++.+++.+.+-+.+++|-.+|.|..+.-+ . .+....+....+++.+
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence 99764321112211 1 11245678899999999999999999999988532 1 2223446677888898
Q ss_pred eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC
Q 009203 422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN 501 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~ 501 (540)
.+..++... ++ ...-..|.+|.+.... +.. ..+..|...+.|.+|++...-+++++. ..+.+|+... .
T Consensus 178 ~~~~d~~s~--lF-v~Tt~~V~~y~l~gr~-p~~-----~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~--~ 245 (933)
T KOG2114|consen 178 ALRSDGKSV--LF-VATTEQVMLYSLSGRT-PSL-----KVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG--R 245 (933)
T ss_pred EEecCCcee--EE-EEecceeEEEEecCCC-cce-----eeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC--c
Confidence 887776432 22 2234589999998544 221 134567778999999875554555544 4599999885 4
Q ss_pred ccccccc-cccccee
Q 009203 502 KPSQSIR-AHQKRVF 515 (540)
Q Consensus 502 ~~~~~~~-~h~~~i~ 515 (540)
.+-..+. +|...+.
T Consensus 246 ~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 246 GPCFAFEVGEKKEML 260 (933)
T ss_pred ceeeeecCCCeEEEE
Confidence 5555565 6655433
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.44 E-value=1e-07 Score=91.95 Aligned_cols=198 Identities=19% Similarity=0.195 Sum_probs=129.4
Q ss_pred ceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeC----CCeEEEE
Q 009203 328 IINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGA----DKRIIGF 401 (540)
Q Consensus 328 ~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~----dg~i~iw 401 (540)
.+.|+++.... ..+++.|..+|.|-+-.++..... ..-...++...+++++|++ |.+.|+.|-. |..+.||
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc---cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 36677766522 357888999999999988875531 1122255888999999987 5566666633 5679999
Q ss_pred ECCCC--Cee----eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEE
Q 009203 402 DAGVG--RAD----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSW 475 (540)
Q Consensus 402 d~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 475 (540)
|+.++ .+. +.........+++|..+. .++.+|.....+.++|++........ -.+..+..+..
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~---klvlaGm~sr~~~ifdlRqs~~~~~s--------vnTk~vqG~tV 203 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDT---KLVLAGMTSRSVHIFDLRQSLDSVSS--------VNTKYVQGITV 203 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCc---chhhcccccchhhhhhhhhhhhhhhh--------hhhhhccccee
Confidence 99876 221 111122333466666444 68899999999999999833211111 12335677888
Q ss_pred cC-CCCEEEEEeCCCcEEEEeccCCCCccccccccccc----ceeEEEEcCCCC-EEEEEEcC-CcEEEEeC
Q 009203 476 SP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK----RVFKAVWHYSHP-LLISISSD-LNIGLHKI 540 (540)
Q Consensus 476 sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~----~i~~l~~s~~~~-~l~s~~~d-g~v~iw~l 540 (540)
+| .++|+++-. ||.|.+||....-..++..+..... .+..++|+|... .+++...| ++|+.+++
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 88 788888776 9999999943211344544443333 489999999753 45555555 77888875
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.39 E-value=9.1e-05 Score=67.50 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=112.8
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
+..+++++.++.+..||..+++...+..... .+.... ...+..++.+ ..++.|..+|..+++....
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~---------~~~~~~-~~~~~~v~v~----~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPG---------PISGAP-VVDGGRVYVG----TSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSS---------CGGSGE-EEETTEEEEE----ETTSEEEEEETTTSCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeeccc---------ccccee-eecccccccc----cceeeeEecccCCcceeee
Confidence 4456666899999999999998766664321 111112 2234556665 6778999999988843222
Q ss_pred EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc------e-eEEEeccCCCE
Q 009203 316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA------V-MGVAGMQQKQI 388 (540)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------v-~~l~~s~~~~~ 388 (540)
...... +... ......... .+..++.+..++.|..+|+.+|+.+|.... ....-... + ..+.+. ++ .
T Consensus 102 ~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~ 175 (238)
T PF13360_consen 102 IYLTSS-PPAG-VRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVIS-DG-R 175 (238)
T ss_dssp EEE-SS-CTCS-TB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECC-TT-E
T ss_pred eccccc-cccc-cccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEE-CC-E
Confidence 111111 1111 112222222 467888888899999999999987555443 11011111 1 223333 44 7
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 389 VLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 389 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
++.++.++.+..+|+.+++.+.... ....... ....+ ..++.++.++.|..||+.+++..
T Consensus 176 v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~---~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 176 VYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDG---GTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCC---TEEEEEETTTEEEEEETTTTEEE
T ss_pred EEEEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeC---CEEEEEeCCCEEEEEECCCCCEE
Confidence 7777777754444999998765333 2222221 22322 36666668999999999988753
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=0.00015 Score=72.27 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=123.6
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe--C----------------CCCCEEE-EE
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL--P----------------WENPCFA-TG 345 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p----------------~~~~~l~-s~ 345 (540)
||++|+.- +-.+..|...+++..+..+.+..-.. ..+.+++|. | .+|..+. +.
T Consensus 140 dGr~~fin---dk~n~Rvari~l~~~~~~~i~~iPn~-----~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ 211 (635)
T PRK02888 140 DGRYLFIN---DKANTRVARIRLDVMKCDKITELPNV-----QGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPK 211 (635)
T ss_pred ceeEEEEe---cCCCcceEEEECccEeeceeEeCCCc-----cCccccCccccCCccEEEeCcccccccCCCCCEeeccc
Confidence 67788875 12466677777766533233322221 113333332 3 0343332 22
Q ss_pred ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC----CeEEEEECCCCCeeeeeccCccEEEE
Q 009203 346 GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD----KRIIGFDAGVGRADFKHQIESKCMSV 421 (540)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~ 421 (540)
-..+.+.+.|..+.+..+++. -.+....++++++|.++++.+.+ .++...+..... ..+
T Consensus 212 ey~~~vSvID~etmeV~~qV~------Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-----------~~v 274 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVM------VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-----------WVV 274 (635)
T ss_pred ceeEEEEEEECccceEEEEEE------eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-----------eEE
Confidence 233556777777655432222 12344667889999999887632 123333332211 222
Q ss_pred eecCCC-----CCceEEEEEcCCCeEEEEECCC----CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcE
Q 009203 422 LPNPCD-----FNLFMVQTGTPGRQLRLYDIRL----RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVI 491 (540)
Q Consensus 422 ~~~~~~-----~~~~~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i 491 (540)
.|+... .++.+... .++.|.+.|..+ +......+. -......+.++|||+++++++ .+.+|
T Consensus 275 vfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-------VGKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 275 VFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-------VPKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred EEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-------CCCCccceEECCCCCEEEEeCCCCCcE
Confidence 232210 01133333 367899999987 222232221 234678899999999977655 58999
Q ss_pred EEEeccCCCC----------cccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 492 HLFDIRYSAN----------KPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 492 ~iwd~~~~~~----------~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.|+|+..... ..+....- .......+|+++|....|.-.|..|..|++
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 9999986210 01222222 223456789999998999999999999985
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.37 E-value=0.00042 Score=67.51 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=69.8
Q ss_pred EEEEECCCCCe----eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE
Q 009203 398 IIGFDAGVGRA----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ 473 (540)
Q Consensus 398 i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~ 473 (540)
-++|+...++. +........+.+.+++|+. ..++.|+.||.|.+||...+..... ...-.++.+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E---~kLvlGC~DgSiiLyD~~~~~t~~~---------ka~~~P~~i 305 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE---DKLVLGCEDGSIILYDTTRGVTLLA---------KAEFIPTLI 305 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCccc---ceEEEEecCCeEEEEEcCCCeeeee---------eecccceEE
Confidence 35566655443 3346677889999999988 6899999999999999986643221 223457889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 474 SWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 474 ~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
+|+|+|.++++|+..|.+.+||+.-
T Consensus 306 aWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 306 AWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999999999999999999874
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=0.0021 Score=62.75 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=61.3
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
...+.|.+++++|+...|+.|+.||.|.+||.... +..+..+.-.++.++|+|+|.++++|+.-|.+.+||+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 45678999999999999999999999999999862 2223334456789999999999999999999999995
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00021 Score=72.08 Aligned_cols=208 Identities=13% Similarity=0.133 Sum_probs=123.0
Q ss_pred EecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCCCCC-eEEEEecC
Q 009203 231 LNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDS-QISVLNLN 308 (540)
Q Consensus 231 ~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~-~i~vwd~~ 308 (540)
|++ ++..++.|+.+|.|.+.+-.- +....+ ..+...+...-|.-++ .+|++....+..+. .|+||+++
T Consensus 31 ~~s-~~~~vvigt~~G~V~~Ln~s~-~~~~~f--------qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 31 CSS-STGSVVIGTADGRVVILNSSF-QLIRGF--------QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred EcC-CCceEEEeeccccEEEecccc-eeeehh--------eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 455 577899999999988877532 111222 2333332223334444 56776622111123 69999997
Q ss_pred CCCC---ceeE---Eeec-CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 309 KTKG---RACV---TFLD-DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 309 ~~~~---~~~~---~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
.-+. +.++ +.+. ..+....++.+++.+. +-..+|.|-.+|.|..+.-+--.... .+.........+|++++
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrg-sr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRG-SRQDYSHRGKEPITGLA 178 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccc-cceeeeccCCCCceeeE
Confidence 5422 3444 3333 1222356788999998 78899999999999888533111100 11111223567999999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
+..++..++.+.....|.+|.+....+... ...+....+..+++... .+++++ +..+.+||....+...
T Consensus 179 ~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~--qfIca~--~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 179 LRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY--QFICAG--SEFLYFYDSDGRGPCF 249 (933)
T ss_pred EecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc--cEEEec--CceEEEEcCCCcceee
Confidence 988888744444455799999985442222 34455666777776542 244443 4589999998665433
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.32 E-value=0.00022 Score=74.70 Aligned_cols=204 Identities=10% Similarity=0.084 Sum_probs=128.8
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
.+.|.++.|.-| +.-++.+..+|.|.+-|..+.. ..+.. .-...|.+++|+||+..++.. +..+++
T Consensus 68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~--~eivg-------~vd~GI~aaswS~Dee~l~li----T~~~tl 133 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLE--LEIVG-------NVDNGISAASWSPDEELLALI----TGRQTL 133 (1265)
T ss_pred CcceEEEEEecc-cceEEEEecCCcEEEEcccccc--eeeee-------eccCceEEEeecCCCcEEEEE----eCCcEE
Confidence 378999999986 7778888889999998887654 22222 224669999999999999988 777777
Q ss_pred EEEec----CCCCC----------------ceeEEeecCCCC------------------cccceeEEEEeCCCCCEEEE
Q 009203 303 SVLNL----NKTKG----------------RACVTFLDDKPH------------------VKGIINSIIFLPWENPCFAT 344 (540)
Q Consensus 303 ~vwd~----~~~~~----------------~~~~~~~~~~~~------------------~~~~v~~~~~~p~~~~~l~s 344 (540)
.+-+- -..+. .+..+.+.+..+ ..+.=+.|.|-- ||.++++
T Consensus 134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAV 212 (1265)
T KOG1920|consen 134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAV 212 (1265)
T ss_pred EEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEE
Confidence 66433 11100 000111111000 011123588887 9999988
Q ss_pred Ee----cC-CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC---CCeEEEEECCC---CCeeeeec
Q 009203 345 GG----SD-HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA---DKRIIGFDAGV---GRADFKHQ 413 (540)
Q Consensus 345 ~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~iwd~~~---~~~~~~~~ 413 (540)
.. .+ ..|++||-+ +.. .... ....+.-.+++|-|.|..+++-.. |+.|.+|.-+. |.......
T Consensus 213 s~~~~~~~~RkirV~drE-g~L----ns~s-e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p 286 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDRE-GAL----NSTS-EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP 286 (1265)
T ss_pred EEEeccCCceeEEEeccc-chh----hccc-CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc
Confidence 32 23 789999988 432 1111 112344568999999999988543 55788887543 33333333
Q ss_pred cCcc-EEEEeecCCCCCceEEEE---EcCCCeEEEEECCCC
Q 009203 414 IESK-CMSVLPNPCDFNLFMVQT---GTPGRQLRLYDIRLR 450 (540)
Q Consensus 414 ~~~~-~~~~~~~~~~~~~~~l~~---~~~dg~v~i~d~~~~ 450 (540)
.+.. +..+.|+.++ ..|++ ......|++|-+.+.
T Consensus 287 ~de~~ve~L~Wns~s---diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNS---DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccchheeeecCCC---CceeeeecccccceEEEEEecCe
Confidence 3433 8899999877 35555 444555999988754
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.28 E-value=0.00067 Score=60.90 Aligned_cols=207 Identities=12% Similarity=0.100 Sum_probs=111.5
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.+=.+.+..|+|+||++.++++....+.|...+.. ++.+.++... + .+..-+|++..++.++++. -.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~------g-~~D~EgI~y~g~~~~vl~~----Er 84 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD------G-FGDYEGITYLGNGRYVLSE----ER 84 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S------S--SSEEEEEE-STTEEEEEE----TT
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC------C-CCCceeEEEECCCEEEEEE----cC
Confidence 345556799999999877788888888888888864 5555554321 2 2346789998888777776 67
Q ss_pred CCeEEEEecCCCCCc---eeEEeec--CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC--CCCccccceee--
Q 009203 299 DSQISVLNLNKTKGR---ACVTFLD--DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD--AEDSWKPKALH-- 369 (540)
Q Consensus 299 d~~i~vwd~~~~~~~---~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~-- 369 (540)
++.+.++++...... .....+. ....+...+-.++|.| .++.|+.+-...-..+|.+.. .... .....
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~--~~~~~~~ 161 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFD--LFVSDDQ 161 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS----EEEE-H
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccc--eeecccc
Confidence 899999998543211 1112221 2112334589999999 666666666666666776654 1110 11110
Q ss_pred ----cccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeeccC----------ccEEEEeecCCCCCceEEE
Q 009203 370 ----RNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQIE----------SKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 370 ----~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~ 434 (540)
.......+.+++++|. |.+++....+..|..+| ..|+.+...... .+.-.+++++++ .|.
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G----~LY 236 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG----NLY 236 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT------EE
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC----CEE
Confidence 1224456889999885 55667777788899999 557765543332 245678888876 333
Q ss_pred EEcCCCeEEEE
Q 009203 435 TGTPGRQLRLY 445 (540)
Q Consensus 435 ~~~~dg~v~i~ 445 (540)
..+.-+..++|
T Consensus 237 IvsEpNlfy~f 247 (248)
T PF06977_consen 237 IVSEPNLFYRF 247 (248)
T ss_dssp EEETTTEEEEE
T ss_pred EEcCCceEEEe
Confidence 33344444443
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.22 E-value=0.0011 Score=67.23 Aligned_cols=205 Identities=8% Similarity=0.005 Sum_probs=114.0
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc--eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP--EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
.+..++.++.|.-.|..+++...++....... .....+ ..++.. ++..++.+ +.++.|.-+|..+++.
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~g~~~~-~~~~V~v~----~~~g~v~AlD~~TG~~--- 132 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPAD--RGCCDVVNRGVAYW-DPRKVFFG----TFDGRLVALDAETGKQ--- 132 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCcc--ccccccccCCcEEc-cCCeEEEe----cCCCeEEEEECCCCCE---
Confidence 45566778899999998888776654322100 000001 111221 22567777 7899999999998843
Q ss_pred EEeecCCCC--cccce-eEEEEeCCCCCEEEEEe---------cCCcEEEEecCCCCCccccceeeccc-----------
Q 009203 316 VTFLDDKPH--VKGII-NSIIFLPWENPCFATGG---------SDHAVVLWSERDAEDSWKPKALHRNL----------- 372 (540)
Q Consensus 316 ~~~~~~~~~--~~~~v-~~~~~~p~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~----------- 372 (540)
+-....... ....+ .+..+. + .+++.++ .+|.+.-+|..+++..|+........
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~ 209 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQ 209 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcc
Confidence 222221110 00001 112222 2 3444443 36789999999999877654421100
Q ss_pred ---CC-cce-eEEEeccCCCEEEEEeCCC------------------eEEEEECCCCCeeeeeccCcc-EE--EE----e
Q 009203 373 ---HS-SAV-MGVAGMQQKQIVLSAGADK------------------RIIGFDAGVGRADFKHQIESK-CM--SV----L 422 (540)
Q Consensus 373 ---~~-~~v-~~l~~s~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~-~~--~~----~ 422 (540)
+. ..+ ...++.+.+..++.++.++ .|.-+|..+|+....++.... .. .. .
T Consensus 210 ~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~ 289 (488)
T cd00216 210 MWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS 289 (488)
T ss_pred eecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe
Confidence 00 011 1234455567788887665 799999999999877553211 00 00 0
Q ss_pred ec----CCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 423 PN----PCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 423 ~~----~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
.. -++....+++.++.+|.+..+|..+++....
T Consensus 290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 00 1111113678888999999999999886543
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.15 E-value=0.0023 Score=64.79 Aligned_cols=249 Identities=10% Similarity=0.053 Sum_probs=136.7
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc-eeEEEecCCCeEEEEeecC-----CCCCeEEEEecCCC
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP-EDIAWHPQGNSLFSAHTAD-----SGDSQISVLNLNKT 310 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V-~~~~~~~~~~~l~s~~~~~-----~~d~~i~vwd~~~~ 310 (540)
..++.++.+|.|.-+|..+++...+........ ....+ .+..+. +..++.+...+ ..++.|..+|..++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~---~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP---PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcC---cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCC
Confidence 567778889999999999998776664321100 00001 112222 23454541000 13678899999888
Q ss_pred CCceeEEeecCCC----C----------cccce-eEEEEeCCCCCEEEEEecCC------------------cEEEEecC
Q 009203 311 KGRACVTFLDDKP----H----------VKGII-NSIIFLPWENPCFATGGSDH------------------AVVLWSER 357 (540)
Q Consensus 311 ~~~~~~~~~~~~~----~----------~~~~v-~~~~~~p~~~~~l~s~~~dg------------------~i~iwd~~ 357 (540)
+............ . -...+ ...++.+ .+.+++.++.++ .|.-+|..
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence 5433332211100 0 00111 1244554 456777776555 69999999
Q ss_pred CCCCccccceeecc-----cCCcce-eEEEeccCCC---EEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCC
Q 009203 358 DAEDSWKPKALHRN-----LHSSAV-MGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDF 428 (540)
Q Consensus 358 ~~~~~~~~~~~~~~-----~~~~~v-~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (540)
+++..|..+..... ....++ ..+. .-+|. .++.++.+|.+..+|.++|+.+....... ..+..+| +
T Consensus 265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~-~- 339 (488)
T cd00216 265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP-G- 339 (488)
T ss_pred CCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC-c-
Confidence 99987765432110 011111 1111 01333 67888899999999999999887654321 1122233 1
Q ss_pred CceEEEEE------------------cCCCeEEEEECCCCcceeeeeccccccCccc------cCe--EEEEEcCCCCEE
Q 009203 429 NLFMVQTG------------------TPGRQLRLYDIRLRQTEIHAFGWKQESSESQ------SAL--INQSWSPDGLYI 482 (540)
Q Consensus 429 ~~~~l~~~------------------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~------~~v--~~~~~sp~g~~l 482 (540)
.++.+ ..+|.+.-+|+.+++..-..- ...+. .+. ..+.. .+..|
T Consensus 340 ---~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~-----~~~~~~~~~~g~~~~~~~~~~--~g~~v 409 (488)
T cd00216 340 ---LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR-----EGTIRDSWNIGFPHWGGSLAT--AGNLV 409 (488)
T ss_pred ---eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee-----CCccccccccCCcccCcceEe--cCCeE
Confidence 22221 246788888988887544321 11000 111 11222 56788
Q ss_pred EEEeCCCcEEEEeccCCCCccccccc
Q 009203 483 TSGSADPVIHLFDIRYSANKPSQSIR 508 (540)
Q Consensus 483 ~sg~~dg~i~iwd~~~~~~~~~~~~~ 508 (540)
++++.||.|+.+|..+ ++.+-.++
T Consensus 410 ~~g~~dG~l~ald~~t--G~~lW~~~ 433 (488)
T cd00216 410 FAGAADGYFRAFDATT--GKELWKFR 433 (488)
T ss_pred EEECCCCeEEEEECCC--CceeeEEE
Confidence 9999999999999998 66655554
No 336
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.13 E-value=0.005 Score=58.13 Aligned_cols=276 Identities=10% Similarity=0.046 Sum_probs=122.5
Q ss_pred EEecCCCcEEEEEeCCceEEEE--EcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203 230 SLNPVNEQLFVTSALDGVIRLW--QLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL 307 (540)
Q Consensus 230 ~~spd~~~~l~tg~~dg~v~iw--~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~ 307 (540)
+|.+|+.++|+.+..||.-.+| |+.+++. .++.. +-........++++++.++.. ..+..|.-.|+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-~QLTd-------g~g~~~~g~~~s~~~~~~~Yv----~~~~~l~~vdL 109 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEI-TQLTD-------GPGDNTFGGFLSPDDRALYYV----KNGRSLRRVDL 109 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-EE----------SS-B-TTT-EE-TTSSEEEEE----ETTTEEEEEET
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEE-EECcc-------CCCCCccceEEecCCCeEEEE----ECCCeEEEEEC
Confidence 5677755677777767765555 5665542 12211 111223356778888887765 56678899999
Q ss_pred CCCCCceeEEeecCCCCcccceeEEEEe-CCCCCEEEEEec----------------------CCcEEEEecCCCCCccc
Q 009203 308 NKTKGRACVTFLDDKPHVKGIINSIIFL-PWENPCFATGGS----------------------DHAVVLWSERDAEDSWK 364 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~ 364 (540)
.+.+. ..+..+. .+.+-...|. ..++..++-.-. ...|.-.|+.+++
T Consensus 110 ~T~e~-~~vy~~p-----~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~---- 179 (386)
T PF14583_consen 110 DTLEE-RVVYEVP-----DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE---- 179 (386)
T ss_dssp TT--E-EEEEE-------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------
T ss_pred CcCcE-EEEEECC-----cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc----
Confidence 98632 2333332 2344445564 225555443211 2345556777776
Q ss_pred cceeecccCCcceeEEEeccCC-CEEEEEeC---CC-eEEEEECCC--CCe--eeeeccCccEEEEeecCCCCCceEEEE
Q 009203 365 PKALHRNLHSSAVMGVAGMQQK-QIVLSAGA---DK-RIIGFDAGV--GRA--DFKHQIESKCMSVLPNPCDFNLFMVQT 435 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~---dg-~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 435 (540)
...+.. -...+..+.|+|.. .+|+.|.. +. .-|||-+++ ... +........+.-=.|.|++....+..-
T Consensus 180 ~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 180 RKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred eeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 344433 45667889999954 45555544 22 135564433 222 222333334444567888754322211
Q ss_pred --EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC----------------cEEEEecc
Q 009203 436 --GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP----------------VIHLFDIR 497 (540)
Q Consensus 436 --~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg----------------~i~iwd~~ 497 (540)
+..+..|.-+|+.+++..... .......+..++||++++-=+.|. .|+++++.
T Consensus 258 ~~~~~~~~i~~~d~~t~~~~~~~---------~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDTGERRRLM---------EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp ETTT--EEEEEE-TTT--EEEEE---------EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred cCCCCceEEEeeCCCCCCceEEE---------eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 222445777888776542211 111344566688998887544432 45667776
Q ss_pred CCCCcccc-------ccccccc-ceeEEEEcCCCCEE-EEEEcCCcEEEE
Q 009203 498 YSANKPSQ-------SIRAHQK-RVFKAVWHYSHPLL-ISISSDLNIGLH 538 (540)
Q Consensus 498 ~~~~~~~~-------~~~~h~~-~i~~l~~s~~~~~l-~s~~~dg~v~iw 538 (540)
......+. .+.++.. .=....|+|||+.+ +++...|...||
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 42111111 1111111 12467899999865 555666776665
No 337
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.13 E-value=2.9e-05 Score=78.50 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=112.9
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC-----CCC
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD-----SGD 299 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~-----~~d 299 (540)
.|+-++.+ ++++.+|...|+|-+-|..+.+.+.++ ..|.+.|.++. -.|+.|+++.... ..|
T Consensus 179 ~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~--------~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D 245 (1118)
T KOG1275|consen 179 GVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTF--------DAHSGSISDFD--VQGNLLITCGYSMRRYNLAMD 245 (1118)
T ss_pred ceEEEEec---CcEEEeecccceEEeecCCcCceeeee--------eccccceeeee--ccCCeEEEeeccccccccccc
Confidence 46666663 679999999999999999998888877 47888776654 4688898882211 136
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
.-|+|||++.......+... .+ ..-+.|+|.-...+++++..|...+-|..+-.... ............+..
T Consensus 246 ~FvkVYDLRmmral~PI~~~------~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~ 317 (1118)
T KOG1275|consen 246 PFVKVYDLRMMRALSPIQFP------YG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISA 317 (1118)
T ss_pred chhhhhhhhhhhccCCcccc------cC-chhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCccee
Confidence 67899999976432333322 22 35678899667889999999999999943321100 111222224556999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEEC
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDA 403 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~ 403 (540)
++++++|+.++.|..+|.|.+|--
T Consensus 318 fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 318 FDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEecCCCceEEEecccCcEeeecC
Confidence 999999999999999999999983
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.00 E-value=0.00048 Score=67.63 Aligned_cols=166 Identities=11% Similarity=0.080 Sum_probs=87.6
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG 406 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 406 (540)
-.+..+.++| +++.++.++ ||...||...... .. ..+....++|.+.+ .+++-...+.|.++.--+.
T Consensus 33 ~~p~~ls~np-ngr~v~V~g-~geY~iyt~~~~r------~k----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 33 IYPQSLSHNP-NGRFVLVCG-DGEYEIYTALAWR------NK----AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp S--SEEEE-T-TSSEEEEEE-TTEEEEEETTTTE------EE----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred cCCeeEEECC-CCCEEEEEc-CCEEEEEEccCCc------cc----ccCceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence 3478999999 999888855 6888888733321 11 23556788998854 4666666888999733333
Q ss_pred CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203 407 RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
........+..+..+.. | .+|+..+. +.|.+||..+++..... .-.+|..+.|+++|.+++..+
T Consensus 100 ~~~k~i~~~~~~~~If~---G---~LL~~~~~-~~i~~yDw~~~~~i~~i---------~v~~vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 100 EVVKSIKLPFSVEKIFG---G---NLLGVKSS-DFICFYDWETGKLIRRI---------DVSAVKYVIWSDDGELVALVT 163 (443)
T ss_dssp -TT-----SS-EEEEE----S---SSEEEEET-TEEEEE-TTT--EEEEE---------SS-E-EEEEE-TTSSEEEEE-
T ss_pred ccceEEcCCcccceEEc---C---cEEEEECC-CCEEEEEhhHcceeeEE---------ecCCCcEEEEECCCCEEEEEe
Confidence 33223344444455544 2 35555544 48999999988754432 112488999999999999987
Q ss_pred CCCcEEEEeccCC-------CC--cccccccccccceeEEEEcCC
Q 009203 487 ADPVIHLFDIRYS-------AN--KPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 487 ~dg~i~iwd~~~~-------~~--~~~~~~~~h~~~i~~l~~s~~ 522 (540)
.+ .+.|++.+.. ++ ..+..+..-...|.+.+|..+
T Consensus 164 ~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 164 KD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred CC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 55 5888877631 00 023333322457888888655
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.96 E-value=0.0024 Score=61.99 Aligned_cols=251 Identities=12% Similarity=0.094 Sum_probs=127.1
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcc------ee-------------------ecccc----------cC
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGA------SL-------------------LSTTD----------CL 269 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~------~~-------------------~~~~~----------~~ 269 (540)
.|+.+.|+++ ..-|+.|...|.|.||.....+... .. ..... ..
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999996 6778999999999999765432211 00 00000 00
Q ss_pred CCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEe--ecC---CCCcccceeEEEEeC----CCC-
Q 009203 270 SPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTF--LDD---KPHVKGIINSIIFLP----WEN- 339 (540)
Q Consensus 270 ~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~--~~~---~~~~~~~v~~~~~~p----~~~- 339 (540)
.....++|++++.+.- -+++.| ..+|.+.|.|++.. ..+.. +.. .......|+++.|.- .|+
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaig----y~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIG----YESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEE----ETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred eeccCCcEeEEecCCC-cEEEEE----ecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 0123678999999744 488998 89999999999754 33322 111 112345688888861 122
Q ss_pred --CEEEEEecCCcEEEEecC-CCCCccccceeecc-cCCcceeEEE-eccC-C-------------------CEEEEEeC
Q 009203 340 --PCFATGGSDHAVVLWSER-DAEDSWKPKALHRN-LHSSAVMGVA-GMQQ-K-------------------QIVLSAGA 394 (540)
Q Consensus 340 --~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~-~~~~~v~~l~-~s~~-~-------------------~~l~~~~~ 394 (540)
-.+++|+..|.+.+|.+- .....+........ .+.+.|..+. |+.+ | ..++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 468889999999999875 22222222222211 3556666555 2211 0 12344444
Q ss_pred CCeEEEEECCCCCeeeeeccC-ccEEEEeecC--CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeE
Q 009203 395 DKRIIGFDAGVGRADFKHQIE-SKCMSVLPNP--CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI 471 (540)
Q Consensus 395 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (540)
+..++++..-+.+........ ..+..+.+-+ ....+..|++-..+|.|++|.+...+...... .. .......+.
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~-l~--~~~d~~~~~ 310 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS-LP--PPLDSRRLS 310 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE--S--S---HHHHT
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc-CC--Ccccccccc
Confidence 668999999888776554422 2333333321 11122578888899999999998766433221 10 111222344
Q ss_pred EEEEcCCCCEEEEEeC
Q 009203 472 NQSWSPDGLYITSGSA 487 (540)
Q Consensus 472 ~~~~sp~g~~l~sg~~ 487 (540)
..+++++|..++-.+.
T Consensus 311 ~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 311 SSSISRNGDIFYWTGP 326 (395)
T ss_dssp T-EE-TTS-EEEE-SS
T ss_pred ccEECCCCCEEEEeCc
Confidence 5677889987776643
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.94 E-value=0.00065 Score=67.87 Aligned_cols=220 Identities=9% Similarity=0.020 Sum_probs=127.5
Q ss_pred EecCCCcEE-EEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC----CeEEEE
Q 009203 231 LNPVNEQLF-VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD----SQISVL 305 (540)
Q Consensus 231 ~spd~~~~l-~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d----~~i~vw 305 (540)
++|| |+.+ .+.-..+.+.+.|.++.+...++.... ....++++++|+++++. +.+ .++...
T Consensus 200 lpnD-Gk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---------npd~v~~spdGk~afvT----syNsE~G~tl~em 265 (635)
T PRK02888 200 LPND-GKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---------NLDNVDTDYDGKYAFST----CYNSEEGVTLAEM 265 (635)
T ss_pred cCCC-CCEeecccceeEEEEEEECccceEEEEEEeCC---------CcccceECCCCCEEEEe----ccCcccCcceeee
Confidence 4555 4433 334455778888888776655554321 23468899999999887 422 223333
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC----CCCccccceeecccCCcceeEEE
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD----AEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
+..+. ..+..+.. ..+ -++.+ +|++... .++.|.+.|..+ +. ..+..-.-......+.
T Consensus 266 ~a~e~---d~~vvfni-----~~i--ea~vk-dGK~~~V--~gn~V~VID~~t~~~~~~-----~v~~yIPVGKsPHGV~ 327 (635)
T PRK02888 266 MAAER---DWVVVFNI-----ARI--EEAVK-AGKFKTI--GGSKVPVVDGRKAANAGS-----ALTRYVPVPKNPHGVN 327 (635)
T ss_pred ccccC---ceEEEEch-----HHH--HHhhh-CCCEEEE--CCCEEEEEECCccccCCc-----ceEEEEECCCCccceE
Confidence 32211 11111110 000 02334 6666555 257899999987 22 1111122445678899
Q ss_pred eccCCCEEEEEeC-CCeEEEEECCCCCe------------eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 382 GMQQKQIVLSAGA-DKRIIGFDAGVGRA------------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 382 ~s~~~~~l~~~~~-dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
++|||+++++++. +.++.++|+.+.+. ......+.......|++.+ ....+-.-|..|..||+.
T Consensus 328 vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G---~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 328 TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRG---NAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCC---CEEEeEeecceeEEEehH
Confidence 9999999887665 88999999987553 2334445566677788776 467777889999999987
Q ss_pred CC------c---ceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203 449 LR------Q---TEIHAFGWKQESSESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 449 ~~------~---~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
.. + ..+..+. .....+|.....+=.-.|||+||++..
T Consensus 405 ~a~~~~~g~~~~~v~~k~d-V~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 405 AAIRAYKGEKVDPIVQKLD-VHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred HHHHHhccccCCcceeccc-CCCccceeeecCCCcCCCCCCEEEEcc
Confidence 61 1 1111110 112234443333334567888888763
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.0019 Score=63.38 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=108.0
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE-EecCCc--EE
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT-GGSDHA--VV 352 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~dg~--i~ 352 (540)
.+..-+|+|++..++...........+.++|++++....... +. +.-...+|+| +|+.|+. ...||. |+
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~------g~~~~P~fsp-DG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FN------GNNGAPAFSP-DGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cC------CccCCccCCC-CCCEEEEEECCCCCccEE
Confidence 356678999999766653322233679999999885533333 22 3345678999 7766654 455665 66
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-C--eEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN 429 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (540)
++|+.++.. ..+.. ..+.-..=.|+|||+.++..+.. | .|.++|...+..............-.++|++
T Consensus 266 ~~dl~~~~~----~~Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG-- 337 (425)
T COG0823 266 LMDLDGKNL----PRLTN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDG-- 337 (425)
T ss_pred EEcCCCCcc----eeccc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCC--
Confidence 678877662 22221 12222356789999998877653 3 4777777766553332222333366678877
Q ss_pred ceEEEEEc-CCCe--EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203 430 LFMVQTGT-PGRQ--LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA 487 (540)
Q Consensus 430 ~~~l~~~~-~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 487 (540)
.+++..+ .+|. |.++|+.++.. ...+ .+......-+|.++|+.+...+.
T Consensus 338 -~~i~~~~~~~g~~~i~~~~~~~~~~-~~~l-------t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 338 -DKIVFESSSGGQWDIDKNDLASGGK-IRIL-------TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred -CEEEEEeccCCceeeEEeccCCCCc-EEEc-------cccccCCCCCcCCCCceEEEecc
Confidence 4444443 3444 66666655542 1111 11222334578888887765543
No 342
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.0049 Score=57.52 Aligned_cols=231 Identities=14% Similarity=0.040 Sum_probs=132.5
Q ss_pred EEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC
Q 009203 280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA 359 (540)
Q Consensus 280 ~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 359 (540)
-.|.++...|+-+ +-..+.|.-|+..++. ...+.. .+.+.++..-. .+..|+++. ..+.+++..++
T Consensus 30 P~w~~~~~~L~w~---DI~~~~i~r~~~~~g~----~~~~~~----p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~ 95 (307)
T COG3386 30 PVWDPDRGALLWV---DILGGRIHRLDPETGK----KRVFPS----PGGFSSGALID-AGGRLIACE--HGVRLLDPDTG 95 (307)
T ss_pred ccCcCCCCEEEEE---eCCCCeEEEecCCcCc----eEEEEC----CCCcccceeec-CCCeEEEEc--cccEEEeccCC
Confidence 4567777744443 2778899999988652 222221 22345554444 444555543 34677777555
Q ss_pred CCccccceeecccCCcceeEEEeccCCCEEEEEeC-----------CCeEEEEECCCCCeeeeecc-CccEEEEeecCCC
Q 009203 360 EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-----------DKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCD 427 (540)
Q Consensus 360 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~ 427 (540)
..................+.+...|+|.+.++... -|.|+.+|. .+..+..... -.....++|+|++
T Consensus 96 ~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 96 GKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred ceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCC
Confidence 42111111111122355678888899887775443 134555665 3444433333 4556789999998
Q ss_pred CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEeccCCCCccccc
Q 009203 428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-VIHLFDIRYSANKPSQS 506 (540)
Q Consensus 428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-~i~iwd~~~~~~~~~~~ 506 (540)
. .++++-+..+.|.-|++....................+..-.++...+|.+-+++..+| .|.+|+.+ ++++..
T Consensus 175 ~--tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd---G~l~~~ 249 (307)
T COG3386 175 K--TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD---GKLLGE 249 (307)
T ss_pred C--EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC---CcEEEE
Confidence 4 34555566688999888631100000000001222445667788888898876555554 89999988 677777
Q ss_pred ccccccceeEEEEc-CCCCEEEEEE
Q 009203 507 IRAHQKRVFKAVWH-YSHPLLISIS 530 (540)
Q Consensus 507 ~~~h~~~i~~l~~s-~~~~~l~s~~ 530 (540)
+......+++++|- ++.+.|...+
T Consensus 250 i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 250 IKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCCCCCccceEeCCCcCEEEEEe
Confidence 77666778899995 4455444433
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.92 E-value=0.016 Score=53.94 Aligned_cols=239 Identities=13% Similarity=0.094 Sum_probs=129.3
Q ss_pred CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 235 NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 235 ~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
.++.|+.|..+| +.+++.......... .+...|..+...++-+.|++- .|+.+.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i---------~~~~~I~ql~vl~~~~~llvL-----sd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI---------LKLSSITQLSVLPELNLLLVL-----SDGQLYVYDLDSLEPVS 70 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE---------eecceEEEEEEecccCEEEEE-----cCCccEEEEchhhcccc
Confidence 467899999888 899998333222222 122338899999988877775 46999999988653222
Q ss_pred eEEee--------cCCCCcccceeEEE-EeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203 315 CVTFL--------DDKPHVKGIINSII-FLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ 385 (540)
Q Consensus 315 ~~~~~--------~~~~~~~~~v~~~~-~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 385 (540)
..... ...-.....+...+ -....+...+.......|.+|.......... .......-...+.+++|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~lp~~~~~i~~~-- 147 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISLPDPPSSIAFL-- 147 (275)
T ss_pred ccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEEcCCCcEEEEEe--
Confidence 11000 00000112244444 1121344444444556899998876422110 122222245788999998
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeeccC------------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 386 KQIVLSAGADKRIIGFDAGVGRADFKHQIE------------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
++.++.|..+ ...+.|+.++......... .....+..-+++ .+|++. +..-.+.|.......
T Consensus 148 ~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~Ll~~--~~~g~fv~~~G~~~r 221 (275)
T PF00780_consen 148 GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDN---EFLLCY--DNIGVFVNKNGEPSR 221 (275)
T ss_pred CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCc---eEEEEe--cceEEEEcCCCCcCc
Confidence 5777777655 4788999876653332211 122223222322 344432 233334444322111
Q ss_pred eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203 454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
...+.| ...+.++++ ...||++.+.++ |.||++.+ ++.++++..
T Consensus 222 ~~~i~W-------~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~--~~lvQ~i~~ 265 (275)
T PF00780_consen 222 KSTIQW-------SSAPQSVAY--SSPYLIAFSSNS-IEVRSLET--GELVQTIPL 265 (275)
T ss_pred ccEEEc-------CCchhEEEE--ECCEEEEECCCE-EEEEECcC--CcEEEEEEC
Confidence 111111 124556666 455888776655 99999998 677666654
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00011 Score=72.45 Aligned_cols=152 Identities=12% Similarity=0.177 Sum_probs=102.2
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec--cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ--IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
+...|.--+++..+.+++.|+.-|.+++|+-..+....... ..+.......++++ .++|.|+..|.|.+|-+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e---~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE---YLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh---HhhhhhcCCceEEeehhhcc
Confidence 44455555666778999999999999999988766543322 33445556667766 68899999999999998874
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC-C-CcccccccccccceeEEEEcCCCCEEEE
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS-A-NKPSQSIRAHQKRVFKAVWHYSHPLLIS 528 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~-~-~~~~~~~~~h~~~i~~l~~s~~~~~l~s 528 (540)
......+ ....-..|...|++++|++++..+++|...|.|..-.+++. . ......+-.-.+.|..+... ++.+|++
T Consensus 109 ~p~~~~~-~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 109 LPRDLDY-VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred CCCccee-eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence 4322111 11122347889999999999999999999999998888751 0 11122222334567777654 3344444
Q ss_pred E
Q 009203 529 I 529 (540)
Q Consensus 529 ~ 529 (540)
.
T Consensus 187 t 187 (726)
T KOG3621|consen 187 T 187 (726)
T ss_pred h
Confidence 3
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.84 E-value=0.0051 Score=55.30 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=108.2
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG 406 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 406 (540)
..+.+++|+|+++.++++....+.|..++.. ++. ...+...+ .+...+|++..++.++++.-.++.+.++++...
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v---lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV---LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E---EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE---EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 4599999999556677777788888888875 443 33333322 456889999877777776666899999988432
Q ss_pred Ce------eeeec------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC--Ccceeeee---ccccccCccccC
Q 009203 407 RA------DFKHQ------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL--RQTEIHAF---GWKQESSESQSA 469 (540)
Q Consensus 407 ~~------~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~--~~~~~~~~---~~~~~~~~~~~~ 469 (540)
.. ...+. .....-.++|++.+. .|+.+-...-..+|.+.. ........ .+. ........
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~---~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d 172 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN---RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD-DDKLFVRD 172 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTT---EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS-
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCC---EEEEEeCCCChhhEEEccccCccceeeccccccc-cccceecc
Confidence 21 11111 223456888988763 344444555555665543 11111110 011 01223346
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCCcccccccccc---------cceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 470 LINQSWSPD-GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ---------KRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 470 v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~---------~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
+.+++++|. |.+++....+..|.++|.. ++++..+.-.. ...-.|+|.++|.+.++ ++-+.+++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~---G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQ---GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT-----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCC---CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 789999995 5667777788889999965 55544433111 24678999999975555 466666554
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.83 E-value=0.0043 Score=60.24 Aligned_cols=209 Identities=12% Similarity=0.084 Sum_probs=112.3
Q ss_pred ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcc-------------------------------------cc-ceee
Q 009203 328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSW-------------------------------------KP-KALH 369 (540)
Q Consensus 328 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------------------------~~-~~~~ 369 (540)
.|+.+.|++ +..-|+.|...|.|.||.....+.-. .+ ....
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 388899999 77778888888999888654322100 00 0000
Q ss_pred cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---------ccEEEEeec-----CCCCCceEEEE
Q 009203 370 RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---------SKCMSVLPN-----PCDFNLFMVQT 435 (540)
Q Consensus 370 ~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~-----~~~~~~~~l~~ 435 (540)
.....++|++++.| |=.+++.|..+|.+.|.|+|....++..... ..+.++.|. .++.....+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 12246789999987 6779999999999999999977776652221 234445443 33334468899
Q ss_pred EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEE-EcCC-C-------------------CEEEEEeCCCcEEEE
Q 009203 436 GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS-WSPD-G-------------------LYITSGSADPVIHLF 494 (540)
Q Consensus 436 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~-g-------------------~~l~sg~~dg~i~iw 494 (540)
|...|.+.+|.+.-.........+......+.+.|..+. |+.+ | .-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 999999999988521111111111111124455665554 4322 1 123333446779999
Q ss_pred eccCCCCcccccccccccceeEEEE-----cCCCCEEEEEEcCCcEEEEeC
Q 009203 495 DIRYSANKPSQSIRAHQKRVFKAVW-----HYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 495 d~~~~~~~~~~~~~~h~~~i~~l~~-----s~~~~~l~s~~~dg~v~iw~l 540 (540)
...+ .+.........-....+.+ ...+..|++-..||.|+++.|
T Consensus 241 ~~~~--~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 241 KPPK--SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp -TT-----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred eCCC--CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 8886 3333222222112233344 235667888899999999864
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.81 E-value=0.051 Score=55.43 Aligned_cols=205 Identities=8% Similarity=0.001 Sum_probs=112.1
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCCC---CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK---HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
.|+.++.++.|.-.|..+++.+.++.......... ....-..+++. +..++.+ +.++.|.-.|..+++...
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~----t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFG----TLDARLVALDAKTGKVVW 144 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEE----cCCCEEEEEECCCCCEEe
Confidence 45556667788888888888766654321100000 00000112332 3456666 789999999999884322
Q ss_pred eEEeecCCCCccccee-EEEEeCCCCCEEEEEe------cCCcEEEEecCCCCCccccceeecccC--------------
Q 009203 315 CVTFLDDKPHVKGIIN-SIIFLPWENPCFATGG------SDHAVVLWSERDAEDSWKPKALHRNLH-------------- 373 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------- 373 (540)
....... .....+. ..... ++ .++.+. .+|.|.-+|..+++.+|+.........
T Consensus 145 ~~~~~~~--~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 145 SKKNGDY--KAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred ecccccc--cccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 2211100 0000111 11121 33 444443 268899999999998887665432100
Q ss_pred ------------Ccce-eEEEeccCCCEEEEEeCC-----C-----------eEEEEECCCCCeeeeeccC---------
Q 009203 374 ------------SSAV-MGVAGMQQKQIVLSAGAD-----K-----------RIIGFDAGVGRADFKHQIE--------- 415 (540)
Q Consensus 374 ------------~~~v-~~l~~s~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~--------- 415 (540)
...+ ..+++.+...+++.+..+ + .|.-.|+++|+....++..
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence 0111 134666666777766532 2 5777889999886554431
Q ss_pred -ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 416 -SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 416 -~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
....-+....++.....++.+..+|.++++|..+++..
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 11111112223322247889999999999999998753
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.79 E-value=0.003 Score=60.31 Aligned_cols=187 Identities=12% Similarity=0.116 Sum_probs=109.9
Q ss_pred CCEEEEEec----------CCcEEEEecCCC-CCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCC
Q 009203 339 NPCFATGGS----------DHAVVLWSERDA-EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGR 407 (540)
Q Consensus 339 ~~~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~ 407 (540)
..+|+.|+. .|.|.++++... ....++..+......++|++++-- +|. |+++. ++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 467777753 288999999984 211223444444467889999876 444 44443 4689999998877
Q ss_pred -eeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203 408 -ADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS 484 (540)
Q Consensus 408 -~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 484 (540)
.... ......+.++.... .++++|.....+.++..+.....+..+. .......++++.|-++++.++.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~-----~~I~vgD~~~sv~~~~~~~~~~~l~~va----~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFK-----NYILVGDAMKSVSLLRYDEENNKLILVA----RDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEET-----TEEEEEESSSSEEEEEEETTTE-EEEEE----EESS-BEEEEEEEE-SSSEEEE
T ss_pred cchhhheecceEEEEEEeccc-----cEEEEEEcccCEEEEEEEccCCEEEEEE----ecCCCccEEEEEEecCCcEEEE
Confidence 4333 33445666666654 3888888888888875554222222221 1122446888888867779999
Q ss_pred EeCCCcEEEEeccCCC-----C--ccccccccc-ccceeEE---EEcCC--C------CEEEEEEcCCcEEE
Q 009203 485 GSADPVIHLFDIRYSA-----N--KPSQSIRAH-QKRVFKA---VWHYS--H------PLLISISSDLNIGL 537 (540)
Q Consensus 485 g~~dg~i~iwd~~~~~-----~--~~~~~~~~h-~~~i~~l---~~s~~--~------~~l~s~~~dg~v~i 537 (540)
+..+|.+.++...... + ........| ...|+++ .+.|. + ..++.++.+|.|.+
T Consensus 190 ~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 190 GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9999999999887310 1 111122223 3467777 55552 2 24888889998873
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.79 E-value=0.0088 Score=58.95 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=108.9
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
-....+.++| +|++++.+ .||.-.|+......... . +.-...+|.+.++ +|+- ..++.|.
T Consensus 33 ~~p~~ls~np-ngr~v~V~-g~geY~iyt~~~~r~k~-~------------G~g~~~vw~~~n~-yAv~----~~~~~I~ 92 (443)
T PF04053_consen 33 IYPQSLSHNP-NGRFVLVC-GDGEYEIYTALAWRNKA-F------------GSGLSFVWSSRNR-YAVL----ESSSTIK 92 (443)
T ss_dssp S--SEEEE-T-TSSEEEEE-ETTEEEEEETTTTEEEE-E------------EE-SEEEE-TSSE-EEEE-----TTS-EE
T ss_pred cCCeeEEECC-CCCEEEEE-cCCEEEEEEccCCcccc-c------------CceeEEEEecCcc-EEEE----ECCCeEE
Confidence 3478899999 58888885 47788888743322111 1 1234688998554 5665 6688899
Q ss_pred EE-ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 304 VL-NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 304 vw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
|+ ++... . ...+.. ...+..|- .|.+|...+. +.|.+||+.+++. ...+ .-..|..+.|
T Consensus 93 I~kn~~~~-~---~k~i~~----~~~~~~If----~G~LL~~~~~-~~i~~yDw~~~~~---i~~i----~v~~vk~V~W 152 (443)
T PF04053_consen 93 IYKNFKNE-V---VKSIKL----PFSVEKIF----GGNLLGVKSS-DFICFYDWETGKL---IRRI----DVSAVKYVIW 152 (443)
T ss_dssp EEETTEE--T---T---------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--E---EEEE----SS-E-EEEEE
T ss_pred EEEcCccc-c---ceEEcC----CcccceEE----cCcEEEEECC-CCEEEEEhhHcce---eeEE----ecCCCcEEEE
Confidence 96 44321 1 111211 11233332 2667766665 4899999999875 2222 2234899999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCC------------CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVG------------RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
+++|.+++..+.+ .+.+++.... .....+.....+.+..|..+ .++.+... .++. +-.+
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d----~fiYtT~~--~lkY--l~~G 223 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED----CFIYTTSN--HLKY--LVNG 223 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT----EEEEE-TT--EEEE--EETT
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC----EEEEEcCC--eEEE--EEcC
Confidence 9999999998876 6777775533 22233443556666667654 23443332 4444 2222
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.... +..-..++.=+.+.+..+.+.....|+.|..+.++.
T Consensus 224 e~~~--------i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 224 ETGI--------IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEE--------EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred Ccce--------EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2111 111133556667777777888888888888887763
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.027 Score=55.47 Aligned_cols=196 Identities=9% Similarity=0.086 Sum_probs=97.9
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc-ceeec-ccCCccee
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP-KALHR-NLHSSAVM 378 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~-~~~~~~v~ 378 (540)
.|.||+... ..+..+.-. .+.+.++.|.. + ..|+.-..||.+++||+.... .... ..... ......+.
T Consensus 62 ~I~iys~sG----~ll~~i~w~---~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSSG----KLLSSIPWD---SGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIF 131 (410)
T ss_pred EEEEECCCC----CEeEEEEEC---CCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccc
Confidence 588888773 233333221 26799999986 4 455566789999999997433 0000 00100 01112222
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCee-ee-eccCccEEE----------EeecCCCCCceEEEEEcCCCeEEEEE
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRAD-FK-HQIESKCMS----------VLPNPCDFNLFMVQTGTPGRQLRLYD 446 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~-~~~~~~~~~----------~~~~~~~~~~~~l~~~~~dg~v~i~d 446 (540)
...+..+|- +.-..++.+.+.+--..... .. ......... ..++.+. ...+....++.+.+.+
T Consensus 132 ~~~~~~~Gi--vvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~---~~~i~~~~g~~i~~i~ 206 (410)
T PF04841_consen 132 AIWFYKNGI--VVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR---VVEILLANGETIYIID 206 (410)
T ss_pred ccccCCCCE--EEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc---ceEEEEecCCEEEEEE
Confidence 333333453 33334455544433222111 00 011000000 1111111 1223333344555333
Q ss_pred CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCC
Q 009203 447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHP 524 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~ 524 (540)
-..... ....+++..+++||+|++||.-..+|.+.|.+.+- .+.+..+... ......|.|.-++.
T Consensus 207 ~~~~~~-----------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf--~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 207 ENSFKQ-----------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF--SEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cccccc-----------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc--cceeEEeecCcCCCCcEEEEECCCc
Confidence 322110 11235899999999999999999999999988765 3344444322 34566777766543
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.69 E-value=0.0014 Score=68.05 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=95.1
Q ss_pred CCEEEEE-eCCCeEEEEECCCCCeeeeeccCcc--EEEEeecCCCC--CceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 386 KQIVLSA-GADKRIIGFDAGVGRADFKHQIESK--CMSVLPNPCDF--NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 386 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
.++|+.. .....|+-.|+..|+.+........ +..++...... ...-.+.|-.++.+..||.+-....+..-..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~- 571 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS- 571 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc-
Confidence 3444443 3457899999999999877655433 44554432100 0124566777889999999965421111000
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
..-......+|++-+.+| +||+|+.+|.||+||-.. .+.-..+.+-..+|.+|..+.||++|++.|. ..+.++
T Consensus 572 -k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 -KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred -cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence 011234457788777666 899999999999999543 3444456677889999999999998887764 344444
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.0066 Score=63.25 Aligned_cols=144 Identities=12% Similarity=0.093 Sum_probs=93.7
Q ss_pred CCCEEEEE-ecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-----CCCEEEEEeCCCeEEEEECCCCC--ee
Q 009203 338 ENPCFATG-GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-----QKQIVLSAGADKRIIGFDAGVGR--AD 409 (540)
Q Consensus 338 ~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~~~~l~~~~~dg~i~iwd~~~~~--~~ 409 (540)
+.++|+.. .....|+-.|++.|+.+..... ....+|..++-.. .....+.|-.+..+..||+|-.. .+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~----~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV----HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeec----CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 44444443 3457799999999985322221 1223355554321 13345667778899999998643 22
Q ss_pred e----eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE
Q 009203 410 F----KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG 485 (540)
Q Consensus 410 ~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 485 (540)
. .+.......+++-+.+| +||+|+.+|.|++||--. .. ....+++-..+|.+|..+.||+||++.
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~~G----~iavgs~~G~IRLyd~~g-~~------AKT~lp~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTEDG----YIAVGSNKGDIRLYDRLG-KR------AKTALPGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred eccccccccCCCceEEEecCCc----eEEEEeCCCcEEeecccc-hh------hhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence 1 12334556677777776 899999999999999432 21 122456677899999999999998876
Q ss_pred eCCCcEEEEecc
Q 009203 486 SADPVIHLFDIR 497 (540)
Q Consensus 486 ~~dg~i~iwd~~ 497 (540)
+ +..|.+++..
T Consensus 637 c-~tyLlLi~t~ 647 (794)
T PF08553_consen 637 C-KTYLLLIDTL 647 (794)
T ss_pred e-cceEEEEEEe
Confidence 5 5567777753
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.66 E-value=0.022 Score=55.23 Aligned_cols=245 Identities=13% Similarity=0.105 Sum_probs=121.8
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccc-ccCCCCC---------CCCceeEEEecCCCeEEEE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT-DCLSPKH---------RRWPEDIAWHPQGNSLFSA 292 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~h---------~~~V~~~~~~~~~~~l~s~ 292 (540)
...+....|||| |+.+|... ++.|.+++..++.. ..+.... .....|- .+.-.++-|||||++|+..
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 567999999996 88888876 57899998876632 1111110 0000000 1223678999999999886
Q ss_pred eecCCC------------------------------CCe--EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC
Q 009203 293 HTADSG------------------------------DSQ--ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP 340 (540)
Q Consensus 293 ~~~~~~------------------------------d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 340 (540)
....+. +.. +.|+|+.+++.. .+............+..+.|.+ ++.
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~-d~~ 196 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSP-DGK 196 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEE-TTE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecC-CCc
Confidence 221111 111 333455444221 1111100001234578899998 776
Q ss_pred EEEEEe--cC---CcEEEEecCCCCCccccceeecccCCcce---eEEEec-cCCC-EEEEEeCCCe--EEEEECCCCCe
Q 009203 341 CFATGG--SD---HAVVLWSERDAEDSWKPKALHRNLHSSAV---MGVAGM-QQKQ-IVLSAGADKR--IIGFDAGVGRA 408 (540)
Q Consensus 341 ~l~s~~--~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v---~~l~~s-~~~~-~l~~~~~dg~--i~iwd~~~~~~ 408 (540)
.|+... .+ ..+.++|..++.+ ..+........| ....|. +++. ++.....+|. |.+++...+..
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~----~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~ 272 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGET----RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP 272 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTC----EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE
T ss_pred EEEEEEcccCCCEEEEEEEECCCCce----eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce
Confidence 344332 22 2477788887664 222222222322 355554 5554 4444556664 66667776654
Q ss_pred eeeeccCccEEE-EeecCCCCCceEEEEEcCC----CeEEEEECC-CCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203 409 DFKHQIESKCMS-VLPNPCDFNLFMVQTGTPG----RQLRLYDIR-LRQTEIHAFGWKQESSESQSALINQSWSPDGLYI 482 (540)
Q Consensus 409 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d----g~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 482 (540)
.......-.+.. +.+++.+. .+.+++..+ ..|...++. .+.. ..+ ......-..+.|||+|+++
T Consensus 273 ~~lT~G~~~V~~i~~~d~~~~--~iyf~a~~~~p~~r~lY~v~~~~~~~~--~~L------T~~~~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 273 RQLTSGDWEVTSILGWDEDNN--RIYFTANGDNPGERHLYRVSLDSGGEP--KCL------TCEDGDHYSASFSPDGKYY 342 (353)
T ss_dssp EESS-SSS-EEEEEEEECTSS--EEEEEESSGGTTSBEEEEEETTETTEE--EES------STTSSTTEEEEE-TTSSEE
T ss_pred eccccCceeecccceEcCCCC--EEEEEecCCCCCceEEEEEEeCCCCCe--Eec------cCCCCCceEEEECCCCCEE
Confidence 433333444434 45566553 344455442 245555555 3332 211 1111111689999999998
Q ss_pred EEEe
Q 009203 483 TSGS 486 (540)
Q Consensus 483 ~sg~ 486 (540)
+...
T Consensus 343 v~~~ 346 (353)
T PF00930_consen 343 VDTY 346 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7543
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.035 Score=54.27 Aligned_cols=205 Identities=13% Similarity=0.163 Sum_probs=133.1
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
-.++++++++.+..++...++.|.+.|..+.......... . ....++++++++.+.++.. +..++.+.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-------~--~P~~~~~~~~~~~vYV~n~-~~~~~~vsvi 145 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-------L--GPVGLAVDPDGKYVYVANA-GNGNNTVSVI 145 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-------c--CCceEEECCCCCEEEEEec-ccCCceEEEE
Confidence 4577888875557777777789999997776554444322 1 3567999999998888711 0137888888
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE-EecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT-GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 384 (540)
|..+. ........ -.. -..+++.| ++..++. -..++.|.+.|........ ........-......+.++|
T Consensus 146 d~~t~---~~~~~~~v---G~~-P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 146 DAATN---KVTATIPV---GNT-PTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDP 216 (381)
T ss_pred eCCCC---eEEEEEec---CCC-cceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECC
Confidence 88876 22333221 012 38899999 8875544 4578999999977654311 00000112334456789999
Q ss_pred CCCEEEEEeCC---CeEEEEECCCCCeeee-eccCc-cEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCcc
Q 009203 385 QKQIVLSAGAD---KRIIGFDAGVGRADFK-HQIES-KCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQT 452 (540)
Q Consensus 385 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~ 452 (540)
+|..+++.... +.+...|..++..... ..... ....+..+|.+ ..+.+. +..+.+.+.|..+...
T Consensus 217 ~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g---~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 217 DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG---KAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCC---CEEEEEecCCCeEEEEeCCCCce
Confidence 99977765554 5899999998776554 22222 45677888887 344444 4458899999887654
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.029 Score=55.24 Aligned_cols=181 Identities=9% Similarity=0.053 Sum_probs=91.4
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCC-CCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
+.|-++.|+.+ . .|+.-..||.++++|+.... .+........ .-....+....+..+| ++.- ..++.+
T Consensus 81 ~~iv~~~wt~~-e-~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvL----t~~~~~ 149 (410)
T PF04841_consen 81 GRIVGMGWTDD-E-ELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVL----TGNNRF 149 (410)
T ss_pred CCEEEEEECCC-C-eEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCCCC--EEEE----CCCCeE
Confidence 79999999973 4 45566789999999986332 1211111000 0111112222333345 2322 344554
Q ss_pred EEEecCCCCCceeEEeecCCCCc------ccceeE-EEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHV------KGIINS-IIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~------~~~v~~-~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
.+..-... ......+...+.. ...... ..++. +....+....++.+.+.+-..... + ...+
T Consensus 150 ~~v~n~~~--~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~------i---~~~~ 217 (410)
T PF04841_consen 150 YVVNNIDE--PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ------I---DSDG 217 (410)
T ss_pred EEEeCccc--cchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc------c---cCCC
Confidence 44422211 1111111111100 000111 22333 344444444555555444332110 1 1246
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEeecCCC
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLPNPCD 427 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~ 427 (540)
++..++.||+|++++.-..+|.+.+.+..-.+....+..+ .....+.|..++
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 7999999999999999999999999887666555544443 445556665543
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.0082 Score=58.92 Aligned_cols=162 Identities=14% Similarity=0.099 Sum_probs=98.6
Q ss_pred cccccCceEEEEEecCCCcEEEEEe---CC-ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSA---LD-GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT 294 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~---~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~ 294 (540)
+..-...+..-+|+|+ +..++.-+ .. ..+.++++.+++....... .++ -..-+|+|||+.|+.+.
T Consensus 188 l~~~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~------~g~---~~~P~fspDG~~l~f~~- 256 (425)
T COG0823 188 LTDSGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF------NGN---NGAPAFSPDGSKLAFSS- 256 (425)
T ss_pred ecccCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeecc------CCc---cCCccCCCCCCEEEEEE-
Confidence 3444466777889997 55544432 22 3588999998875444321 222 33578999999887763
Q ss_pred cCCCCC--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-C--cEEEEecCCCCCccccceee
Q 009203 295 ADSGDS--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-H--AVVLWSERDAEDSWKPKALH 369 (540)
Q Consensus 295 ~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~ 369 (540)
..|| .|.+.|+.+.. ...+.. ..+.-..-.|+| +|+.|+..+.. | .|.+++.+.+.. ..+.
T Consensus 257 --~rdg~~~iy~~dl~~~~----~~~Lt~---~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT 322 (425)
T COG0823 257 --SRDGSPDIYLMDLDGKN----LPRLTN---GFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLT 322 (425)
T ss_pred --CCCCCccEEEEcCCCCc----ceeccc---CCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce----eEee
Confidence 4445 45666777543 222222 123333678999 88888776543 3 377777777653 3333
Q ss_pred cccCCcceeEEEeccCCCEEEEEeCC-Ce--EEEEECCCCC
Q 009203 370 RNLHSSAVMGVAGMQQKQIVLSAGAD-KR--IIGFDAGVGR 407 (540)
Q Consensus 370 ~~~~~~~v~~l~~s~~~~~l~~~~~d-g~--i~iwd~~~~~ 407 (540)
.. .+.-..-.|+|||++|+..+.. |. |.+.|+.++.
T Consensus 323 ~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 323 FS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 32 2222277899999999987753 33 6666666555
No 357
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.56 E-value=0.082 Score=52.15 Aligned_cols=158 Identities=11% Similarity=0.121 Sum_probs=90.4
Q ss_pred cCceEEEEEecCCCcEEEEEe--CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC----eEEEEeecC
Q 009203 223 KRKLRSLSLNPVNEQLFVTSA--LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN----SLFSAHTAD 296 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~----~l~s~~~~~ 296 (540)
-.+|..++|.- +.+.++|.- .+|.+++=|. .. -|....|..+.|.|-+. .|++.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds-------~v--------iGqFEhV~GlsW~P~~~~~~paLLAV---- 78 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDS-------KV--------IGQFEHVHGLSWAPPCTADTPALLAV---- 78 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCCc-------cE--------eeccceeeeeeecCcccCCCCceEEE----
Confidence 35889999984 566666643 2333332221 11 13445589999998532 34444
Q ss_pred CCCCeEEEEecCCCC---CceeE-EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203 297 SGDSQISVLNLNKTK---GRACV-TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~---~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
.....|.||.+.... ....+ ++-+......--..++.|+| ....|+.-.....-.+++++.... +....-.
T Consensus 79 QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~s----rVkaDi~ 153 (671)
T PF15390_consen 79 QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSS----RVKADIK 153 (671)
T ss_pred eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCc----eEEEecc
Confidence 789999999987321 11111 11111000111234678999 777776665544445666665442 2211123
Q ss_pred CCcceeEEEeccCCCEEEEEeCC-CeEEEEECCC
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGAD-KRIIGFDAGV 405 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~d-g~i~iwd~~~ 405 (540)
..+.|.|.+|.+||+.|+++-.. =.-++||-..
T Consensus 154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 56789999999999988776443 2467888643
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.53 E-value=0.00015 Score=43.79 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=33.4
Q ss_pred cccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 502 KPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 502 ~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556677888999999999999999999999999996
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.52 E-value=0.091 Score=53.63 Aligned_cols=166 Identities=9% Similarity=-0.009 Sum_probs=92.3
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec--CCCCCeEEEEecCCCCCcee
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA--DSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~--~~~d~~i~vwd~~~~~~~~~ 315 (540)
.++.++.|+.+.-.|..+++.+........ .....+.+--.--++ .++++... .+.+|.|..+|..+++....
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~----~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDY----KAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccc----cccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 566777899999999999987665532110 000111111111134 44444110 01368899999988854333
Q ss_pred EEeecCCC-------------------------Cccccee-EEEEeCCCCCEEEEEecC-----C-----------cEEE
Q 009203 316 VTFLDDKP-------------------------HVKGIIN-SIIFLPWENPCFATGGSD-----H-----------AVVL 353 (540)
Q Consensus 316 ~~~~~~~~-------------------------~~~~~v~-~~~~~p~~~~~l~s~~~d-----g-----------~i~i 353 (540)
.......+ +-.+.++ .+++.| ...+++.+..+ + +|.-
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 22222110 0011222 346666 55556555421 2 5777
Q ss_pred EecCCCCCccccceeecccCCc----ceeEEEeccCCC---EEEEEeCCCeEEEEECCCCCee
Q 009203 354 WSERDAEDSWKPKALHRNLHSS----AVMGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRAD 409 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~----~v~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~ 409 (540)
.|+++++..|..+......+.- ...-+....+|+ .++.+..+|.+++.|.++|+.+
T Consensus 276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 8999999887777654322211 112222334665 7888999999999999999875
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.044 Score=51.26 Aligned_cols=221 Identities=11% Similarity=0.036 Sum_probs=114.5
Q ss_pred EEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203 230 SLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK 309 (540)
Q Consensus 230 ~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~ 309 (540)
.|.++.+.++.+--..+.|.-|+..+++. ..+ .+...+.++..-..+..|+++ +.-+.+++.++
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~---------~~p~~~~~~~~~d~~g~Lv~~------~~g~~~~~~~~ 94 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVF---------PSPGGFSSGALIDAGGRLIAC------EHGVRLLDPDT 94 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEE---------ECCCCcccceeecCCCeEEEE------ccccEEEeccC
Confidence 45665555677777778888888876542 112 112223455555555566665 44466777755
Q ss_pred CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-----------CCcEEEEecCCCCCccccceeecccCCccee
Q 009203 310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-----------DHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
+.....+.... ........+.+...| +|.+.++... -|.|+.+|. .+.. ...+ ..+-..-+
T Consensus 95 ~~~~t~~~~~~-~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~---~~l~--~~~~~~~N 166 (307)
T COG3386 95 GGKITLLAEPE-DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV---VRLL--DDDLTIPN 166 (307)
T ss_pred CceeEEecccc-CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCE---EEee--cCcEEecC
Confidence 42211111111 112234577888888 7776655433 133444443 2321 1111 22345568
Q ss_pred EEEeccCCCEEEEEeC-CCeEEEEECCC--CCe----ee-ee-ccCccEEEEeecCCCCCceEEEEEcCCC-eEEEEECC
Q 009203 379 GVAGMQQKQIVLSAGA-DKRIIGFDAGV--GRA----DF-KH-QIESKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIR 448 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~-dg~i~iwd~~~--~~~----~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~ 448 (540)
.|+||||++.|+.+.. .+.|..|++.. +.. .. .. ...+..-.++.+.++ .+.+++..+| .|.+|+..
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG---~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG---NLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC---CEEEecccCCceEEEECCC
Confidence 9999999987776655 47788887763 111 00 11 112333334444444 3443444443 89999888
Q ss_pred CCcceeeeeccccccCccccCeEEEEEc-CCCCEEEEE
Q 009203 449 LRQTEIHAFGWKQESSESQSALINQSWS-PDGLYITSG 485 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~sg 485 (540)
++...... -....+++++|- |+.+.|++.
T Consensus 244 -G~l~~~i~-------lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 244 -GKLLGEIK-------LPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred -CcEEEEEE-------CCCCCCccceEeCCCcCEEEEE
Confidence 44322211 112456777773 444554433
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.49 E-value=0.11 Score=51.63 Aligned_cols=226 Identities=12% Similarity=0.103 Sum_probs=113.5
Q ss_pred eeEEEecCCCeEEEEeec-CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-------
Q 009203 278 EDIAWHPQGNSLFSAHTA-DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH------- 349 (540)
Q Consensus 278 ~~~~~~~~~~~l~s~~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg------- 349 (540)
....++|+|++||.+... |+....|+++|+.+++ .....+.. .....+.|.+ +++.|+....+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--~l~d~i~~-----~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--FLPDGIEN-----PKFSSVSWSD-DGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--EEEEEEEE-----EESEEEEECT-TSSEEEEEECSTTTSS-CC
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--CcCCcccc-----cccceEEEeC-CCCEEEEEEeCcccccccC
Confidence 367889999999877444 4445679999999872 22222221 1123499999 777766554332
Q ss_pred ----cEEEEecCCCCCccccceeecccCCcc-eeEEEeccCCCEEEEEeCC----CeEEEEECCCC-----Ceeeeec-c
Q 009203 350 ----AVVLWSERDAEDSWKPKALHRNLHSSA-VMGVAGMQQKQIVLSAGAD----KRIIGFDAGVG-----RADFKHQ-I 414 (540)
Q Consensus 350 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~-----~~~~~~~-~ 414 (540)
.|+.|.+.+... .-..+........ ...+..++|+++|+..... ..+.+.|+..+ ....... .
T Consensus 199 ~~~~~v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 377788877653 1112322222222 6688889999998764432 35888888875 2222222 2
Q ss_pred CccEEEEeecCCCCCceEEEEE--cCCCeEEEEECCCCcceeeeeccccccCcccc--CeEEEEEcCCCCEEEEE-eCCC
Q 009203 415 ESKCMSVLPNPCDFNLFMVQTG--TPGRQLRLYDIRLRQTEIHAFGWKQESSESQS--ALINQSWSPDGLYITSG-SADP 489 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg-~~dg 489 (540)
......+....+. .++.+. ..++.|...++......... ..+..+.. .+..+.. .+.+|+.. ..++
T Consensus 277 ~~~~~~v~~~~~~---~yi~Tn~~a~~~~l~~~~l~~~~~~~~~----~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 277 DGVEYYVDHHGDR---LYILTNDDAPNGRLVAVDLADPSPAEWW----TVLIPEDEDVSLEDVSL--FKDYLVLSYRENG 347 (414)
T ss_dssp SS-EEEEEEETTE---EEEEE-TT-TT-EEEEEETTSTSGGGEE----EEEE--SSSEEEEEEEE--ETTEEEEEEEETT
T ss_pred CceEEEEEccCCE---EEEeeCCCCCCcEEEEecccccccccce----eEEcCCCCceeEEEEEE--ECCEEEEEEEECC
Confidence 2222223222211 344443 23466777777766531100 01223333 3444444 45555544 3443
Q ss_pred --cEEEEeccCCCCccccccc-ccccceeEEEEcCCCC
Q 009203 490 --VIHLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHP 524 (540)
Q Consensus 490 --~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~ 524 (540)
.|++|++.. +.....+. .-.+.|..+...+++.
T Consensus 348 ~~~l~v~~~~~--~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 348 SSRLRVYDLDD--GKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEEEEETT---TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred ccEEEEEECCC--CcEEeeecCCcceEEeccCCCCCCC
Confidence 578888882 22222222 1233456666555554
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.069 Score=47.66 Aligned_cols=244 Identities=11% Similarity=0.063 Sum_probs=133.5
Q ss_pred EEEEecCCCcEEEEEeCCce-EEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee-cCCCCCeEEEE
Q 009203 228 SLSLNPVNEQLFVTSALDGV-IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT-ADSGDSQISVL 305 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-~~~~d~~i~vw 305 (540)
.++|+|....-++.+-.-|+ ..++|....+.+.++.....-...|| =.|||||.+|+..-+ ....-|.|-||
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEEEE
Confidence 56777765556666666665 46788887776665544332222344 468999999988611 01344789999
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec------------------CCcEEEEecCCCCCccccce
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS------------------DHAVVLWSERDAEDSWKPKA 367 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~ 367 (540)
|...+ ...+-.+. .|.-....+.|.+ ||..++.+.. .-++.+.|..++..+.+. +
T Consensus 146 d~r~~--fqrvgE~~---t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh-~ 218 (366)
T COG3490 146 DAREG--FQRVGEFS---THGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH-T 218 (366)
T ss_pred ecccc--cceecccc---cCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc-c
Confidence 99855 23333333 3444467888999 9998887642 112344454454432211 1
Q ss_pred eecccCCcceeEEEeccCCCEEEEEeCCCe-----EEEEECCCCCeeeeecc--------CccEEEEeecCCCCCceEEE
Q 009203 368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKR-----IIGFDAGVGRADFKHQI--------ESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ 434 (540)
+....+.-.|..++..+||..++.+-..|. -.+=-...++.+..... ...+-+++.+-... ...+
T Consensus 219 Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g--lV~l 296 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG--LVAL 296 (366)
T ss_pred CchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC--eEEE
Confidence 211235566888888888877665543331 11111122333222211 23445566554431 3444
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
+.-..+...+||..++....... + ..+..++ +...-+++.+.+|.+.++.-.
T Consensus 297 TSP~GN~~vi~da~tG~vv~~a~-----l----~daaGva--~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 297 TSPRGNRAVIWDAATGAVVSEAA-----L----PDAAGVA--AAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred ecCCCCeEEEEEcCCCcEEeccc-----c----cccccce--eccCceEEecCCceEEecccc
Confidence 55555678899999887533210 0 1122222 234445566678888887433
No 363
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.0002 Score=61.11 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=86.6
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203 388 IVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES 466 (540)
Q Consensus 388 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 466 (540)
.+...+.||.|+-++++.-+.-...... .....+.-. + .-+++|+.+|.|++|+..........+ ..+-
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~--~---~~~~vG~~dg~v~~~n~n~~g~~~d~~-----~s~~ 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA--S---AKLMVGTSDGAVYVFNWNLEGAHSDRV-----CSGE 101 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc--C---ceEEeecccceEEEecCCccchHHHhh-----hccc
Confidence 3445667888888887653331111000 000111111 1 478999999999999987332211110 0111
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccc-cceeEEEEcCCCCEEEEE--EcCCcEEEEeC
Q 009203 467 QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ-KRVFKAVWHYSHPLLISI--SSDLNIGLHKI 540 (540)
Q Consensus 467 ~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~~l~s~--~~dg~v~iw~l 540 (540)
....+.+.--.++.+.++++.||.|+.|++.. .+.+.....|. .++..+..+..+.+|+++ |.|..++.|++
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p--~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP--NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeecccc--CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 12223333344667899999999999999986 56666666677 567777777777888888 88888888875
No 364
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.46 E-value=0.03 Score=53.54 Aligned_cols=236 Identities=8% Similarity=-0.019 Sum_probs=102.9
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCC-CceeEEeecCCCCc----ccceeEEEEeCCCCCEEEEEec------CCcEEE
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTK-GRACVTFLDDKPHV----KGIINSIIFLPWENPCFATGGS------DHAVVL 353 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~s~~~------dg~i~i 353 (540)
+.++|+.. +-..+.|.|+|+.+.. ..+..++++...-+ -+....+-..| +|.+++++-. -|.+.+
T Consensus 86 ~Rr~Li~P---gL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 86 ERRYLILP---GLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp -S-EEEEE---BTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEE
T ss_pred cCCcEEee---eeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEE
Confidence 34466665 2588999999998543 33444554421000 01123334456 8888887622 245777
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC--------------------CCeEEEEECCCCCeeeeec
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA--------------------DKRIIGFDAGVGRADFKHQ 413 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~ 413 (540)
+|-++.+.......- .+....-+.+-|.|..+.+++... ..++.+||+.+.+.++...
T Consensus 162 lD~~tf~v~g~We~~--~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 162 LDGETFEVKGRWEKD--RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp E-TTT--EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred EcCccccccceeccC--CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 777765431111110 112334567778888888887642 3579999999999988876
Q ss_pred cC---ccEEEEee--cCCCCCceEEEEEcCCCeEEEEEC-CCCcc---eeeeeccc-----------cccCccccCeEEE
Q 009203 414 IE---SKCMSVLP--NPCDFNLFMVQTGTPGRQLRLYDI-RLRQT---EIHAFGWK-----------QESSESQSALINQ 473 (540)
Q Consensus 414 ~~---~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~-~~~~~---~~~~~~~~-----------~~~~~~~~~v~~~ 473 (540)
.+ ...+.+.| +|.... -++.+.-..+|..|-- ..+.- .+..+... ..+..-..-|+.|
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~--gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANY--GFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--E--EEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred cCCCCCceEEEEecCCCCccc--eEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 65 23444444 555432 3333334455555544 32220 11111000 0011113457899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEeccCCCCcccc--ccc----------------ccccceeEEEEcCCCCEEEEE
Q 009203 474 SWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQ--SIR----------------AHQKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 474 ~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~--~~~----------------~h~~~i~~l~~s~~~~~l~s~ 529 (540)
..|.|.++|.... .+|.|+.||+..+ ..+.. .+. .-.+...-|..|-||+.|...
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EEccCCCEEEEEcccCCcEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 9999999988665 5899999999974 22221 111 011233667788888876554
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.43 E-value=0.16 Score=50.56 Aligned_cols=264 Identities=13% Similarity=0.121 Sum_probs=133.7
Q ss_pred EEEeccchhcccc-cCceEEEEEecCCCcEEEEE-eCC----ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe
Q 009203 210 IHCHTSNHVSSLH-KRKLRSLSLNPVNEQLFVTS-ALD----GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH 283 (540)
Q Consensus 210 i~~~~~~~~~~~h-~~~V~~l~~spd~~~~l~tg-~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 283 (540)
-.+.|....-.++ .-.+..++++|| +++||.+ +.. ..+++.|+.+++.+....... ....+.|.
T Consensus 109 evllD~n~l~~~~~~~~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---------~~~~~~W~ 178 (414)
T PF02897_consen 109 EVLLDPNELAKDGGYVSLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---------KFSSVSWS 178 (414)
T ss_dssp EEEEEGGGGSTTSS-EEEEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---------ESEEEEEC
T ss_pred EEEEcchHhhccCceEEeeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc---------ccceEEEe
Confidence 4455766665666 344556889996 7776654 333 359999999986543321111 01249999
Q ss_pred cCCCeEEEEeecC-CC------CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC----CcEE
Q 009203 284 PQGNSLFSAHTAD-SG------DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD----HAVV 352 (540)
Q Consensus 284 ~~~~~l~s~~~~~-~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~ 352 (540)
++++.|+...... .. ...|+.|.+.++.... ...++.... ......+..++ ++++|+..... ..++
T Consensus 179 ~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~-~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~ 255 (414)
T PF02897_consen 179 DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDE-PFWFVSVSRSK-DGRYLFISSSSGTSESEVY 255 (414)
T ss_dssp TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTC-TTSEEEEEE-T-TSSEEEEEEESSSSEEEEE
T ss_pred CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCC-CcEEEEEEecC-cccEEEEEEEccccCCeEE
Confidence 9988776652221 12 4458888888764321 233443221 11266788898 88887654332 3478
Q ss_pred EEecCCCC-CccccceeecccCCcceeEEEeccCCCEEEEEeC---CCeEEEEECCCCCe---e-eeecc--CccEEEEe
Q 009203 353 LWSERDAE-DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA---DKRIIGFDAGVGRA---D-FKHQI--ESKCMSVL 422 (540)
Q Consensus 353 iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~---~-~~~~~--~~~~~~~~ 422 (540)
+.|+..+. ....+..+.. ....+....-+.++.+++.... ++.|...++..... . ..... ...+..+.
T Consensus 256 ~~d~~~~~~~~~~~~~l~~--~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 256 LLDLDDGGSPDAKPKLLSP--REDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp EEECCCTTTSS-SEEEEEE--SSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred EEeccccCCCcCCcEEEeC--CCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 88887751 0111222221 2233333222224444444332 45677788877653 1 11222 22344444
Q ss_pred ecCCCCCceEEEEEcCCC--eEEEEECC-CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE--e--CCCcEEEEe
Q 009203 423 PNPCDFNLFMVQTGTPGR--QLRLYDIR-LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG--S--ADPVIHLFD 495 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~dg--~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg--~--~dg~i~iwd 495 (540)
...+ .+++....++ .|++|++. +....... +. -.+.|..+...++++.+... + .-++++.||
T Consensus 334 ~~~~----~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~------~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 334 LFKD----YLVLSYRENGSSRLRVYDLDDGKESREIP------LP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp EETT----EEEEEEEETTEEEEEEEETT-TEEEEEEE------SS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred EECC----EEEEEEEECCccEEEEEECCCCcEEeeec------CC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 4332 3555555554 48888888 33221111 11 12345566655655544322 2 235677788
Q ss_pred ccCC
Q 009203 496 IRYS 499 (540)
Q Consensus 496 ~~~~ 499 (540)
+.++
T Consensus 403 ~~t~ 406 (414)
T PF02897_consen 403 LATG 406 (414)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8763
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.41 E-value=0.017 Score=43.99 Aligned_cols=104 Identities=8% Similarity=0.105 Sum_probs=68.7
Q ss_pred eeEEEEeCCCC---CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC
Q 009203 329 INSIIFLPWEN---PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV 405 (540)
Q Consensus 329 v~~~~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 405 (540)
|++|++...++ +.|++|+.|..|++|+-..-- .. ....+.|.+++-... ..++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~-----~E---i~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV-----AE---ITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE-----EE---EecccceEEEEEcCC-CEEEEEecCCEEEEEeCc-
Confidence 56666654333 679999999999999876421 11 225577888887765 668889999999999763
Q ss_pred CCeeeeeccCccEEEEeecC-CCCCceEEEEEcCCCeEE
Q 009203 406 GRADFKHQIESKCMSVLPNP-CDFNLFMVQTGTPGRQLR 443 (540)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~v~ 443 (540)
..+........+.++.+.. ++....-|++|-.+|.|-
T Consensus 72 -~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 -QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3344444455566655433 222225688888888764
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0008 Score=65.85 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=70.7
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCce-eEEEecCCCeEEEEeecCCCCCeE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE-DIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
-.|.-+.|+| .-.++|++..+|.|.++.++ .+.+.++ +-|...++ +++|.|||+.||+| -.||+|
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwti--------p~p~~~v~~sL~W~~DGkllaVg----~kdG~I 86 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTI--------PIPGENVTASLCWRPDGKLLAVG----FKDGTI 86 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEec--------cCCCCccceeeeecCCCCEEEEE----ecCCeE
Confidence 3578899999 58999999999999998887 5555555 23445555 99999999999999 899999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeC
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP 336 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 336 (540)
++.|+.++.. +..+.. .....|.++-|.+
T Consensus 87 ~L~Dve~~~~---l~~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 87 RLHDVEKGGR---LVSFLF--SVETDISKGIWDR 115 (665)
T ss_pred EEEEccCCCc---eecccc--ccccchheeeccc
Confidence 9999998732 222111 1234578888864
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00073 Score=66.09 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=72.6
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee-EEEeccCCCEEEEEeCCCeEEEEECCC
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM-GVAGMQQKQIVLSAGADKRIIGFDAGV 405 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~~dg~i~iwd~~~ 405 (540)
..+.-+.|+| .-.+||++..+|.|-++.+. -+.+|. + .-+...++ +++|.|||+.|++|-.||+|++.|..+
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwt---i--p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWT---I--PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEe---c--cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 3478899999 99999999999999888887 332222 2 22555566 999999999999999999999999999
Q ss_pred CCeeee--eccCccEEEEeecC
Q 009203 406 GRADFK--HQIESKCMSVLPNP 425 (540)
Q Consensus 406 ~~~~~~--~~~~~~~~~~~~~~ 425 (540)
+..+.. ......+..+.|.+
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 988766 45556666777764
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.38 E-value=0.048 Score=52.09 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=108.3
Q ss_pred CcEEEEEeC----------CceEEEEEcCCC-C--CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 236 EQLFVTSAL----------DGVIRLWQLQSR-G--SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 236 ~~~l~tg~~----------dg~v~iw~~~~~-~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
..+|+.|.. .|.|.++++... . ....+... ....++|++++-. .| .|+++ .++.|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-----~~~~g~V~ai~~~-~~-~lv~~-----~g~~l 109 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-----TEVKGPVTAICSF-NG-RLVVA-----VGNKL 109 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-----EEESS-EEEEEEE-TT-EEEEE-----ETTEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-----EeecCcceEhhhh-CC-EEEEe-----ecCEE
Confidence 467777742 289999999884 1 11122111 1235678888776 34 45554 46899
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
.+|++...+.......+.. ...+.++... +++++.|.....+.++..+.... ++..+........++++.|
T Consensus 110 ~v~~l~~~~~l~~~~~~~~----~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~--~l~~va~d~~~~~v~~~~~ 180 (321)
T PF03178_consen 110 YVYDLDNSKTLLKKAFYDS----PFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN--KLILVARDYQPRWVTAAEF 180 (321)
T ss_dssp EEEEEETTSSEEEEEEE-B----SSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE---EEEEEEESS-BEEEEEEE
T ss_pred EEEEccCcccchhhheecc----eEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC--EEEEEEecCCCccEEEEEE
Confidence 9999987641122222221 2356777664 46899999888888875543110 1333444445677899999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCC-------CC-e---eeeeccCccEEEE---eecCC--CCC---ceEEEEEcCCCeEE
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGV-------GR-A---DFKHQIESKCMSV---LPNPC--DFN---LFMVQTGTPGRQLR 443 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~-------~~-~---~~~~~~~~~~~~~---~~~~~--~~~---~~~l~~~~~dg~v~ 443 (540)
-++++.++.+..+|.+.++.... +. . ...+..+..+.++ ...|. +.. ...++.++.+|.|.
T Consensus 181 l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 181 LVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp E-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred ecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence 86667999999999999987752 22 1 2235556666666 43441 111 13467777788877
Q ss_pred E
Q 009203 444 L 444 (540)
Q Consensus 444 i 444 (540)
+
T Consensus 261 ~ 261 (321)
T PF03178_consen 261 V 261 (321)
T ss_dssp E
T ss_pred E
Confidence 3
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.064 Score=48.25 Aligned_cols=172 Identities=11% Similarity=0.107 Sum_probs=107.8
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
.|-...|.++.|+|+ .+.|++....+.-.||=...|+.+.++.... -...-.+.|..+|.+.++- -.+
T Consensus 82 ~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------~~DpE~Ieyig~n~fvi~d----ER~ 149 (316)
T COG3204 82 LGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------FSDPETIEYIGGNQFVIVD----ERD 149 (316)
T ss_pred ccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccc-------cCChhHeEEecCCEEEEEe----hhc
Confidence 344556999999997 6777777777777788777788777765432 1223568898888888887 788
Q ss_pred CeEEEEecCCCCCceeE----EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee-----ec
Q 009203 300 SQISVLNLNKTKGRACV----TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL-----HR 370 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~ 370 (540)
..+.++.++........ -.+....+.....-.++|.| ....|..+-.-.-+.||.+............ ..
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~ 228 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR 228 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence 99998887755221111 11222222234478999999 6666666666666777766643311001110 00
Q ss_pred ccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECC
Q 009203 371 NLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAG 404 (540)
Q Consensus 371 ~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~ 404 (540)
.-.-..|.++.|++ .+.+++.+..++.+.-.|..
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 11234577888876 45667777778888777776
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.29 E-value=0.0004 Score=41.77 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=29.7
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEE
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQ 252 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~ 252 (540)
+.+|...|++++|+++ +.++++++.|+.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 4578899999999995 78999999999999996
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.21 Score=48.88 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=146.0
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEe
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWS 355 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd 355 (540)
...+...+++..+.... .....+...+.... ........+ .....++++++ .+. .+++...+..|.+.|
T Consensus 33 ~~~v~~~~~g~~~~v~~---~~~~~~~~~~~~~n----~~~~~~~~g--~~~p~~i~v~~-~~~~vyv~~~~~~~v~vid 102 (381)
T COG3391 33 PGGVAVNPDGTQVYVAN---SGSNDVSVIDATSN----TVTQSLSVG--GVYPAGVAVNP-AGNKVYVTTGDSNTVSVID 102 (381)
T ss_pred CceeEEcCccCEEEEEe---ecCceeeecccccc----eeeeeccCC--CccccceeeCC-CCCeEEEecCCCCeEEEEc
Confidence 45688888887665551 22224555444411 111111100 13356788888 555 666666678999999
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC---CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceE
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA---DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (540)
..+... .... .-......++++++++.++.+.. ++.+.+.|..+++.+.....+.....++++|++. ..
T Consensus 103 ~~~~~~---~~~~---~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~--~v 174 (381)
T COG3391 103 TATNTV---LGSI---PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGN--KV 174 (381)
T ss_pred Ccccce---eeEe---eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCC--eE
Confidence 776553 1111 12226778999999988877766 6889999999888877655444448889999884 24
Q ss_pred EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCccccc-cc
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQS-IR 508 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~-~~ 508 (540)
+++-..++.|.++|........ ........-......+.++|+|.++...... +.+...|..+ +..... ..
T Consensus 175 yv~~~~~~~v~vi~~~~~~v~~---~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~--~~v~~~~~~ 249 (381)
T COG3391 175 YVTNSDDNTVSVIDTSGNSVVR---GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT--GNVTATDLP 249 (381)
T ss_pred EEEecCCCeEEEEeCCCcceec---cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--ceEEEeccc
Confidence 5555688999999976554321 0000111223355778999999976655433 5888888876 333332 11
Q ss_pred -ccccceeEEEEcCCCCEEEEEEc-CCcEEEEe
Q 009203 509 -AHQKRVFKAVWHYSHPLLISISS-DLNIGLHK 539 (540)
Q Consensus 509 -~h~~~i~~l~~s~~~~~l~s~~~-dg~v~iw~ 539 (540)
+-. ....+..+|+|..+..... .+.+.+-|
T Consensus 250 ~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 250 VGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred cccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 112 4567889999987776633 35555543
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.28 E-value=0.024 Score=43.16 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=68.4
Q ss_pred eeEEEecc---C-CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 377 VMGVAGMQ---Q-KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 377 v~~l~~s~---~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
|+++++.. + .+.|++|+.|..|++|+-. ..+........+.++.....+ .++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~----~F~Y~l~NGTVGvY~~~~Rl- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGG----RFAYALANGTVGVYDRSQRL- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCC----EEEEEecCCEEEEEeCccee-
Confidence 55666643 2 2689999999999999864 556667777788888777664 78999999999999874221
Q ss_pred eeeeeccccccCccccCeEEEEEc-CC--C-CEEEEEeCCCcEEE
Q 009203 453 EIHAFGWKQESSESQSALINQSWS-PD--G-LYITSGSADPVIHL 493 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~s-p~--g-~~l~sg~~dg~i~i 493 (540)
.+. + ....++++++. .+ | .-|++|-.+|.|-+
T Consensus 75 -WRi-------K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 -WRI-------K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -eee-------c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 110 1 12235665543 33 3 35889988997743
No 374
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.28 E-value=0.19 Score=48.12 Aligned_cols=256 Identities=16% Similarity=0.121 Sum_probs=123.6
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeec---CCC
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTA---DSG 298 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~---~~~ 298 (540)
.-+.|+|.|| |++|++ ...|.|++++ ..+.....+. ...............++++|+ ..+|...++. ...
T Consensus 3 ~P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~-~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVA-DLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEE-E-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceec-ccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 4578999996 887665 5599999999 3333211221 111112344567899999994 3455554321 011
Q ss_pred C--CeEEEEecCCCCC-----ceeEEeecC--CCCcccceeEEEEeCCCCCEEEEEecCC-------------cEEEEec
Q 009203 299 D--SQISVLNLNKTKG-----RACVTFLDD--KPHVKGIINSIIFLPWENPCFATGGSDH-------------AVVLWSE 356 (540)
Q Consensus 299 d--~~i~vwd~~~~~~-----~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~dg-------------~i~iwd~ 356 (540)
. ..|.-|.+..+.. ...+..+.. ...| .-..|.|.| ++.++++.+..+ .|.-.+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H--~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH--NGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCC--CCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecc
Confidence 2 2344454443200 111222222 1123 245699999 887777765432 2333333
Q ss_pred CCCCCc---------cccceeecccCCcceeEEEeccC-CCEEEEEe-CCCeEEEEECCCCC------------------
Q 009203 357 RDAEDS---------WKPKALHRNLHSSAVMGVAGMQQ-KQIVLSAG-ADKRIIGFDAGVGR------------------ 407 (540)
Q Consensus 357 ~~~~~~---------~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~-~dg~i~iwd~~~~~------------------ 407 (540)
...-.. .... +...++ .-...++|+|. |.++++-. .++.=.|--+..|.
T Consensus 156 dG~~p~dnP~~~~~~~~~~-i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~ 233 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSE-IYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPI 233 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTT-EEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-E
T ss_pred cCcCCCCCccccCCCceEE-EEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcc
Confidence 221000 0001 111122 23457899998 65554422 12221222122211
Q ss_pred -----------eeeeeccCccEEEEeecCCC----CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE
Q 009203 408 -----------ADFKHQIESKCMSVLPNPCD----FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN 472 (540)
Q Consensus 408 -----------~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~ 472 (540)
+...+.....+..+.+.... ..+.++++....+.|....+.......... ..+......+..
T Consensus 234 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~r~~~ 310 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE---EFLGGFGGRPRD 310 (331)
T ss_dssp CTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---EECTTSSS-EEE
T ss_pred ccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE---EccccCCCCceE
Confidence 11112223344555554322 233577777777788888886554322211 122344557999
Q ss_pred EEEcCCCCEEEEEeCCCcEE
Q 009203 473 QSWSPDGLYITSGSADPVIH 492 (540)
Q Consensus 473 ~~~sp~g~~l~sg~~dg~i~ 492 (540)
+++.|||.++++-+.+|.|+
T Consensus 311 v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 311 VAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEETTSEEEEEE-TTTTEE
T ss_pred EEEcCCCeEEEEECCCCeEe
Confidence 99999999998888888875
No 375
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.27 E-value=0.077 Score=50.38 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=111.1
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
|....+.=+|.++|+.|+.++.. .....+.+.|+.++ ...+.-.+. ........++| +.+.++....+..|+
T Consensus 34 h~~YF~~~~ft~dG~kllF~s~~-dg~~nly~lDL~t~---~i~QLTdg~---g~~~~g~~~s~-~~~~~~Yv~~~~~l~ 105 (386)
T PF14583_consen 34 HRLYFYQNCFTDDGRKLLFASDF-DGNRNLYLLDLATG---EITQLTDGP---GDNTFGGFLSP-DDRALYYVKNGRSLR 105 (386)
T ss_dssp E---TTS--B-TTS-EEEEEE-T-TSS-EEEEEETTT----EEEE---SS----B-TTT-EE-T-TSSEEEEEETTTEEE
T ss_pred cceeecCCCcCCCCCEEEEEecc-CCCcceEEEEcccC---EEEECccCC---CCCccceEEec-CCCeEEEEECCCeEE
Confidence 33445566789999866665221 23456777788875 334333321 12233466778 667776665567889
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEe--ccCCCEEEEEe----------------------CCCeEEEEECCCCCe
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAG--MQQKQIVLSAG----------------------ADKRIIGFDAGVGRA 408 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~--s~~~~~l~~~~----------------------~dg~i~iwd~~~~~~ 408 (540)
-.|+.+.+. ..+. ......+-...| +.++..++-.- -...|...|+.+|+.
T Consensus 106 ~vdL~T~e~----~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 106 RVDLDTLEE----RVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp EEETTT--E----EEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred EEECCcCcE----EEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 999998763 2222 223444444455 34555544321 123467778898888
Q ss_pred eeeeccCccEEEEeecCCCCCceEEEEEcC---CC-eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203 409 DFKHQIESKCMSVLPNPCDFNLFMVQTGTP---GR-QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS 484 (540)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 484 (540)
...+.......-+.++|.++. +|+-|-. +. .-+||-+++.......+. .. .-...+..=-|.|||..|..
T Consensus 181 ~~v~~~~~wlgH~~fsP~dp~--li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~~--~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 181 KVVFEDTDWLGHVQFSPTDPT--LIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--RR--MEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEEEESS-EEEEEEETTEEE--EEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEEEEEE-TTSS-EEE
T ss_pred eEEEecCccccCcccCCCCCC--EEEEeccCCcceeceEEEEEEcCCCcceeee--cC--CCCcccccccccCCCCEEEE
Confidence 777888888888999998764 4444322 22 125565554332222110 01 11223455579999987764
Q ss_pred Ee-----CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203 485 GS-----ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 485 g~-----~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
-+ .+..|.-+|+.+...+.+..+ ..-..+.-++||+++|--|.|
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence 32 244566677776322222111 133455567899877765554
No 376
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.24 E-value=0.074 Score=46.01 Aligned_cols=217 Identities=8% Similarity=0.022 Sum_probs=114.1
Q ss_pred CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC---CEEEEEecCCcEEEEecCCCCC--
Q 009203 287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN---PCFATGGSDHAVVLWSERDAED-- 361 (540)
Q Consensus 287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~-- 361 (540)
.++.+- -..+.|.-||..+.+. ....+++ .++.++.+-- .+ .+.+.++..-.|--||......
T Consensus 28 sLl~VD----i~ag~v~r~D~~qn~v--~ra~ie~-----p~~ag~ilpv-~~~~q~~~v~~G~kf~i~nwd~~~~~a~v 95 (310)
T KOG4499|consen 28 SLLYVD----IEAGEVHRYDIEQNKV--YRAKIEG-----PPSAGFILPV-EGGPQEFAVGCGSKFVIVNWDGVSESAKV 95 (310)
T ss_pred eEEEEE----eccCceehhhhhhhhe--EEEEEec-----CcceeEEEEe-cCCCceEEEeecceEEEEEcccccceeee
Confidence 345554 5677787899886522 2223332 1133333322 22 2334444434455576432211
Q ss_pred ccccceeecccCCcceeEEEeccCCCEEEEEeC----------CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203 362 SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA----------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (540)
......+.........+.-..+|+|++++ |.. .|.++.|-.. ++.......-.-...+.|+.+.. .
T Consensus 96 ~~t~~ev~~d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K--~ 171 (310)
T KOG4499|consen 96 YRTLFEVQPDRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAK--K 171 (310)
T ss_pred eeeccccCchHHhcccccCccCCCCceee-eeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCc--E
Confidence 00001111111234566677889999844 332 2345555443 22211122122234566774442 4
Q ss_pred EEEEEcCCCeEEEEE--CCCCccee--eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc
Q 009203 432 MVQTGTPGRQLRLYD--IRLRQTEI--HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d--~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 507 (540)
+.++-+.+-.|.-|| ..++.... ..+..........-..-.++.+.+|++.++.-..|+|..+|..+ ++.+.++
T Consensus 172 fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t--GK~L~ei 249 (310)
T KOG4499|consen 172 FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT--GKILLEI 249 (310)
T ss_pred EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC--CcEEEEE
Confidence 566777788887788 44443211 11111111000111233456677888888888889999999998 8888888
Q ss_pred cccccceeEEEEcC
Q 009203 508 RAHQKRVFKAVWHY 521 (540)
Q Consensus 508 ~~h~~~i~~l~~s~ 521 (540)
.-....|++++|--
T Consensus 250 klPt~qitsccFgG 263 (310)
T KOG4499|consen 250 KLPTPQITSCCFGG 263 (310)
T ss_pred EcCCCceEEEEecC
Confidence 88888999999953
No 377
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.23 E-value=0.21 Score=47.78 Aligned_cols=249 Identities=15% Similarity=0.069 Sum_probs=118.2
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeec-CCCCcccceeEEEEeCC---CCCEEEEEecC----
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLD-DKPHVKGIINSIIFLPW---ENPCFATGGSD---- 348 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~---~~~~l~s~~~d---- 348 (540)
.++|+|.|||++|++- ..|.|++++.. +.....+..+. ...........++++|. ++.+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~e-----~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAE-----RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp EEEEEEETTSCEEEEE-----TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred ceEEEEeCCCcEEEEe-----CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 4689999999888874 69999999933 32112233331 11223455899999982 23333433321
Q ss_pred ----CcEEEEecCCCC-Cccccceee-c--c--cCCcceeEEEeccCCCEEEEEeCC-------------CeEEEEECCC
Q 009203 349 ----HAVVLWSERDAE-DSWKPKALH-R--N--LHSSAVMGVAGMQQKQIVLSAGAD-------------KRIIGFDAGV 405 (540)
Q Consensus 349 ----g~i~iwd~~~~~-~~~~~~~~~-~--~--~~~~~v~~l~~s~~~~~l~~~~~d-------------g~i~iwd~~~ 405 (540)
..|.-|....+. .......+. . . .....-..|.|.|||.+.++.+.. |.|.-.+..
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d- 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD- 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-
Confidence 234444443331 101011111 1 1 122335669999999777766543 234444433
Q ss_pred CCee-------------eee-ccCccEEEEeecCCCCCceEEEE-EcCCCeEEEEECCCCcceee---e---------e-
Q 009203 406 GRAD-------------FKH-QIESKCMSVLPNPCDFNLFMVQT-GTPGRQLRLYDIRLRQTEIH---A---------F- 457 (540)
Q Consensus 406 ~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~---~---------~- 457 (540)
++.. ..+ ..--....++|+|... .++++ .+.++.=.|.-+..+..-.. . .
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg--~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG--RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT--EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCC--cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 2210 000 0112345678888721 23332 22222222222222110000 0 0
Q ss_pred ---------ccccccCccccCeEEEEEcC-------CCCEEEEEeCCCcEEEEeccCCCCccc--cc-ccccccceeEEE
Q 009203 458 ---------GWKQESSESQSALINQSWSP-------DGLYITSGSADPVIHLFDIRYSANKPS--QS-IRAHQKRVFKAV 518 (540)
Q Consensus 458 ---------~~~~~~~~~~~~v~~~~~sp-------~g~~l~sg~~dg~i~iwd~~~~~~~~~--~~-~~~h~~~i~~l~ 518 (540)
.....+ .+...++.+.|-. .|.++++.-..+.|....+... +... .. +......+..|+
T Consensus 235 ~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED-GSVTEEEEFLGGFGGRPRDVA 312 (331)
T ss_dssp TGSS-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEEEEECTTSSS-EEEEE
T ss_pred cccCCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC-CCccceEEccccCCCCceEEE
Confidence 000011 2335667777753 3556666666678888887642 2211 11 233444799999
Q ss_pred EcCCCCEEEEEEcCCcEE
Q 009203 519 WHYSHPLLISISSDLNIG 536 (540)
Q Consensus 519 ~s~~~~~l~s~~~dg~v~ 536 (540)
+.|||.+.++.+.+|.|.
T Consensus 313 ~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EETTSEEEEEE-TTTTEE
T ss_pred EcCCCeEEEEECCCCeEe
Confidence 999999999988899774
No 378
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.22 E-value=0.13 Score=47.95 Aligned_cols=209 Identities=10% Similarity=0.026 Sum_probs=115.5
Q ss_pred EEEEEecCCCcEEEEEe--CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCCCCCeEE
Q 009203 227 RSLSLNPVNEQLFVTSA--LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDSQIS 303 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~ 303 (540)
..++++.| +++++... =-.+|.|-|+...+.+..+... | |.-..|.+ +.+.+. +.||.+.
T Consensus 98 ~~~~ls~d-gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P------G------C~~iyP~~~~~F~~l----C~DGsl~ 160 (342)
T PF06433_consen 98 NMFALSAD-GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP------G------CWLIYPSGNRGFSML----CGDGSLL 160 (342)
T ss_dssp GGEEE-TT-SSEEEEEEESSSEEEEEEETTTTEEEEEEEGT------S------EEEEEEEETTEEEEE----ETTSCEE
T ss_pred cceEEccC-CcEEEEEccCCCCeEEEEECCCCceeeeecCC------C------EEEEEecCCCceEEE----ecCCceE
Confidence 44577775 67666653 2356888888887665544321 1 33333433 345555 6899999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccce--eec----cc-CCcc
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA--LHR----NL-HSSA 376 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~----~~-~~~~ 376 (540)
...++..........--........+..-++.. .+..++--+.+|.|+--|+........... +.. .+ ..+.
T Consensus 161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp EEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred EEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 998884322221111111111122233445555 555566678889999988887653111100 000 00 1122
Q ss_pred eeEEEeccCCCEEEEEeC--------CC--eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203 377 VMGVAGMQQKQIVLSAGA--------DK--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD 446 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d 446 (540)
-.-+++++..+.|++.-. |+ .|.++|+.+++.+........+.++..+.++.- .+++....++.+.+||
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P-~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKP-LLYALSAGDGTLDVYD 318 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS--EEEEEETTTTEEEEEE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCc-EEEEEcCCCCeEEEEe
Confidence 334677665555544221 11 488889999999988887777777777765532 3444556789999999
Q ss_pred CCCCccee
Q 009203 447 IRLRQTEI 454 (540)
Q Consensus 447 ~~~~~~~~ 454 (540)
..+++...
T Consensus 319 ~~tGk~~~ 326 (342)
T PF06433_consen 319 AATGKLVR 326 (342)
T ss_dssp TTT--EEE
T ss_pred CcCCcEEe
Confidence 99987543
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.19 E-value=0.04 Score=56.63 Aligned_cols=209 Identities=12% Similarity=0.083 Sum_probs=112.9
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC------CcEEEEecCCCCCccccceeecccC
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD------HAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
..+..+|..++.. .....+. ....-.++++. ++.+.++||.| .++..||..+.+-.. ...+....+
T Consensus 301 ~~ve~yd~~~~~w-~~~a~m~----~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~ 372 (571)
T KOG4441|consen 301 RSVECYDPKTNEW-SSLAPMP----SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRS 372 (571)
T ss_pred ceeEEecCCcCcE-eecCCCC----cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccc
Confidence 4677888876522 1111121 12224455555 56888999988 357788988876311 111111111
Q ss_pred CcceeEEEeccCCCEEEEEeCCCe-----EEEEECCCCCeeeeeccCc---cEEEEeecCCCCCceEEEEEcCCC-----
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKR-----IIGFDAGVGRADFKHQIES---KCMSVLPNPCDFNLFMVQTGTPGR----- 440 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg----- 440 (540)
. .+++. -+|.+.++|+.||. +-.||..+.+-........ ......+.. .+.++|+.++
T Consensus 373 ~---~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g-----~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 373 D---FGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGG-----KLYIIGGGDGSSNCL 443 (571)
T ss_pred c---ceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECC-----EEEEEcCcCCCcccc
Confidence 1 12222 25788888998874 7888888765433322211 111222222 5666776443
Q ss_pred -eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCc-----EEEEeccCCCCcccccccccccce
Q 009203 441 -QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPV-----IHLFDIRYSANKPSQSIRAHQKRV 514 (540)
Q Consensus 441 -~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~-----i~iwd~~~~~~~~~~~~~~h~~~i 514 (540)
++..||..+..=... .....-........+ ++.+.+.||.|+. |..||..+.....+..+......+
T Consensus 444 ~sve~YDP~t~~W~~~-----~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLI-----APMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred ceEEEEcCCCCceeec-----CCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 577888876541110 011111112222333 7788888988773 777888875455555455444444
Q ss_pred eEEEEcCCCCEEEEEEcCCc
Q 009203 515 FKAVWHYSHPLLISISSDLN 534 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~dg~ 534 (540)
....+ ++...+.||.||.
T Consensus 517 g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 517 GVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred cEEEE--CCEEEEEecccCc
Confidence 44444 6677888888764
No 380
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.15 E-value=0.026 Score=49.46 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=77.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc
Q 009203 386 KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE 465 (540)
Q Consensus 386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 465 (540)
..+++.|+..+.+.-.|..+|........+..+-+-+.--. .+++.|...|.+++.+.+++.........
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvg----dfVV~GCy~g~lYfl~~~tGs~~w~f~~~------ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVG----DFVVLGCYSGGLYFLCVKTGSQIWNFVIL------ 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEEC----CEEEEEEccCcEEEEEecchhheeeeeeh------
Confidence 46778888999999999999988776555544443222222 37999999999999999998754433210
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203 466 SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR 508 (540)
Q Consensus 466 ~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 508 (540)
..--......+++..+..|+.|+..+..|..+ ..++...+
T Consensus 93 -~~vk~~a~~d~~~glIycgshd~~~yalD~~~--~~cVyksk 132 (354)
T KOG4649|consen 93 -ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT--YGCVYKSK 132 (354)
T ss_pred -hhhccceEEcCCCceEEEecCCCcEEEecccc--cceEEecc
Confidence 11112335677999999999999999999987 45555544
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.13 E-value=0.29 Score=47.61 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=37.1
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc
Q 009203 466 SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK 512 (540)
Q Consensus 466 ~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~ 512 (540)
....+.+++.+|++++.|+...=|.|.++|+.. +..++.++|..+
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~--~~vvrmWKGYRd 350 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVAR--GIVVRMWKGYRD 350 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCC--ChhhhhhccCcc
Confidence 344578899999999999988889999999998 777888876544
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.11 E-value=0.092 Score=54.06 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=85.9
Q ss_pred ccCceEEEEEecCCCcEEEEEe------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSA------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
....+...+++|| |..+|... .|+.-.||-...+.....+. .+. ..+.-.|+|+|..|++....
T Consensus 348 ~~~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-------~g~--~~t~PsWspDG~~lw~v~dg 417 (591)
T PRK13616 348 QMGNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-------EGH--SLTRPSWSLDADAVWVVVDG 417 (591)
T ss_pred cccCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-------cCC--CCCCceECCCCCceEEEecC
Confidence 3356889999997 65555443 34445555544333222221 121 26788999998877776100
Q ss_pred --------CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE---EecCCCCC-cc
Q 009203 296 --------DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL---WSERDAED-SW 363 (540)
Q Consensus 296 --------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i---wd~~~~~~-~~ 363 (540)
....+.+.+.+++.+.. ... ..+.|..+.|+| ||..++... +|.|++ -....+.. +.
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~---~~~------~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~ 486 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAV---ASR------VPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALT 486 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchh---hhc------cCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeec
Confidence 01122333334433211 101 135699999999 999887765 477777 44334431 10
Q ss_pred ccceeecccCCcceeEEEeccCCCEEEEEeCCCe--EEEEECC
Q 009203 364 KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKR--IIGFDAG 404 (540)
Q Consensus 364 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~--i~iwd~~ 404 (540)
.+..+. ..-...+.++.|..++.++ ++..++. +...++.
T Consensus 487 ~~~~l~-~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 487 NPREVG-PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD 527 (591)
T ss_pred ccEEee-cccCCccccceEecCCEEE-EEecCCCCceEEEecC
Confidence 111111 1233346889999888855 5454443 4444444
No 383
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=97.11 E-value=0.38 Score=51.78 Aligned_cols=168 Identities=10% Similarity=0.096 Sum_probs=101.4
Q ss_pred CCCceeEEEe---c----CCCeEEEEeecCCCCCeEEEEecC------CCCC------ceeEEeecCCCCcccceeEEEE
Q 009203 274 RRWPEDIAWH---P----QGNSLFSAHTADSGDSQISVLNLN------KTKG------RACVTFLDDKPHVKGIINSIIF 334 (540)
Q Consensus 274 ~~~V~~~~~~---~----~~~~l~s~~~~~~~d~~i~vwd~~------~~~~------~~~~~~~~~~~~~~~~v~~~~~ 334 (540)
..+|..|+|. . ..++|++ -....+.|+... .... ...+..+........+...++|
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~V-----rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAV-----RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEE-----EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence 4567778887 2 2236665 456667777621 1110 1122222221112346778999
Q ss_pred eCCCCCEEEEEecCCcEEEEecCCCCCc--ccccee--------ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203 335 LPWENPCFATGGSDHAVVLWSERDAEDS--WKPKAL--------HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG 404 (540)
Q Consensus 335 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~--------~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~ 404 (540)
+|++...||.....|...|||+...... ...... ......+.-..+.|.++.+.|++++. ..+.++|+.
T Consensus 154 nP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~ 232 (765)
T PF10214_consen 154 NPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFE 232 (765)
T ss_pred ccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECC
Confidence 9999999999999999999999221110 001110 00011133447889888778887766 478999999
Q ss_pred CCCe---eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 405 VGRA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 405 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
+... +........+..+.-+|.+....+++|. ..|...|+...
T Consensus 233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~~ 278 (765)
T PF10214_consen 233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKSS 278 (765)
T ss_pred CCCccchhccCCChhheeeEEecCCccceEEEEec---CeEEEEEccCC
Confidence 8765 2233445678888888886554445542 57888888873
No 384
>PHA02713 hypothetical protein; Provisional
Probab=97.02 E-value=0.068 Score=55.09 Aligned_cols=183 Identities=8% Similarity=0.041 Sum_probs=94.2
Q ss_pred CCCEEEEEecC------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC-----eEEEEECCCC
Q 009203 338 ENPCFATGGSD------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVG 406 (540)
Q Consensus 338 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 406 (540)
++.+++.||.+ ..+..||..+... ..+........-.+++. -+|...+.|+.++ .+..||..++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W----~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH----VELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE----eeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 66778888754 3477888877642 11110001111112222 2577778887754 4888998876
Q ss_pred CeeeeeccCc---cEEEEeecCCCCCceEEEEEcCC-----------------------CeEEEEECCCCcceeeeeccc
Q 009203 407 RADFKHQIES---KCMSVLPNPCDFNLFMVQTGTPG-----------------------RQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 407 ~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d-----------------------g~v~i~d~~~~~~~~~~~~~~ 460 (540)
+-........ ....+... + .+.+.|+.+ ..+..||..+..= ...
T Consensus 378 ~W~~~~~mp~~r~~~~~~~~~--g---~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W--~~v--- 447 (557)
T PHA02713 378 KWKMLPDMPIALSSYGMCVLD--Q---YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW--ETL--- 447 (557)
T ss_pred eEEECCCCCcccccccEEEEC--C---EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE--eec---
Confidence 4322211111 11112222 2 456666544 2477788765431 100
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCC------cEEEEeccC-CCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADP------VIHLFDIRY-SANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg------~i~iwd~~~-~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
..+.........+++ +|++.+.|+.++ .+..||..+ .....+..+.........+++ +|++.++||.||
T Consensus 448 ~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 448 PNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred CCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecc
Confidence 011111111122233 677777777542 467899886 445555555544433444444 788899999888
Q ss_pred --cEEEEe
Q 009203 534 --NIGLHK 539 (540)
Q Consensus 534 --~v~iw~ 539 (540)
.+..||
T Consensus 524 ~~~~e~yd 531 (557)
T PHA02713 524 YMLQDTFN 531 (557)
T ss_pred eeehhhcC
Confidence 454444
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.01 E-value=0.11 Score=53.65 Aligned_cols=188 Identities=10% Similarity=0.023 Sum_probs=102.4
Q ss_pred CCceeEEEecCCCeEEEEeec--CCCCC--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--
Q 009203 275 RWPEDIAWHPQGNSLFSAHTA--DSGDS--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-- 348 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~--~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-- 348 (540)
..+.+.+++|+|+.++..... +..|. .|.+++... .. .....+ .....-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~--~~lt~g-----~~~t~PsWsp-DG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VA--VQVLEG-----HSLTRPSWSL-DADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cc--eeeecC-----CCCCCceECC-CCCceEEEecCcc
Confidence 467899999999988876211 01233 455555432 11 222232 2377889999 87777666432
Q ss_pred ----------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEE---EECCCCCeee-----
Q 009203 349 ----------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIG---FDAGVGRADF----- 410 (540)
Q Consensus 349 ----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~i---wd~~~~~~~~----- 410 (540)
+.+.+.+++.+.. .. ...+.|..+.|||||..++... +|.|++ -....|....
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~----~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~ 490 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAV----AS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE 490 (591)
T ss_pred eEEEeccCCCceEEEEeccCchh----hh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE
Confidence 2333334444432 11 1346799999999999988776 467777 4544454211
Q ss_pred -eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203 411 -KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP 489 (540)
Q Consensus 411 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg 489 (540)
.........++.|..++ . |+++..++...+|.+.-.......+ .......++..|+-+++ .|+....+|
T Consensus 491 l~~~l~~~~~~l~W~~~~---~-L~V~~~~~~~~v~~v~vDG~~~~~~----~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGD---S-LVVGRSDPEHPVWYVNLDGSNSDAL----PSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred eecccCCccccceEecCC---E-EEEEecCCCCceEEEecCCcccccc----CCCCccCceEEEecCCc--eEEEEcCCc
Confidence 11223345778888877 3 4454444444444443222111100 00112456777777763 455556666
Q ss_pred cE
Q 009203 490 VI 491 (540)
Q Consensus 490 ~i 491 (540)
.+
T Consensus 561 ~~ 562 (591)
T PRK13616 561 VL 562 (591)
T ss_pred eE
Confidence 33
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.00 E-value=0.62 Score=49.05 Aligned_cols=286 Identities=9% Similarity=0.013 Sum_probs=148.6
Q ss_pred cCceEEEEEecC--CCc---EEEEEeCCceEEEEEcCCCCCcceee-cccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 223 KRKLRSLSLNPV--NEQ---LFVTSALDGVIRLWQLQSRGSGASLL-STTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 223 ~~~V~~l~~spd--~~~---~l~tg~~dg~v~iw~~~~~~~~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
...|.|+.++|- +.+ +++.|.++..+.+--........... ... +.-...|.-..|-.|..+|.++
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~----~~iPRSIl~~~~e~d~~yLlva---- 601 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG----EIIPRSILLTTFEGDIHYLLVA---- 601 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC----CccchheeeEEeeccceEEEEE----
Confidence 468999999973 333 89999988877665443322211110 110 1122335556666678899999
Q ss_pred CCCCeEEEEecCCCCCc--eeE-EeecCCCCcccceeEEEEeCCCC----------------------------------
Q 009203 297 SGDSQISVLNLNKTKGR--ACV-TFLDDKPHVKGIINSIIFLPWEN---------------------------------- 339 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~--~~~-~~~~~~~~~~~~v~~~~~~p~~~---------------------------------- 339 (540)
..||.+..|.++..... ... ..+. ..++.--.|+....
T Consensus 602 lgdG~l~~fv~d~~tg~lsd~Kk~~lG-----t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c 676 (1096)
T KOG1897|consen 602 LGDGALLYFVLDINTGQLSDRKKVTLG-----TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMC 676 (1096)
T ss_pred cCCceEEEEEEEcccceEccccccccC-----CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhc
Confidence 99999987755433210 000 0111 11111112221111
Q ss_pred --------CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC--------------Ce
Q 009203 340 --------PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD--------------KR 397 (540)
Q Consensus 340 --------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--------------g~ 397 (540)
..++++. .+.+.+.-++.-+.+. .+++. -......+++.+....+.+.+.. ..
T Consensus 677 ~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~-irtvp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~ 751 (1096)
T KOG1897|consen 677 PFNSDAYPDSLASAN-GGALTIGTIDEIQKLH-IRTVP---LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSF 751 (1096)
T ss_pred ccccccCCceEEEec-CCceEEEEecchhhcc-eeeec---CCCChhheEecccceEEEEEecccccchhhcCCcceEEE
Confidence 1122222 2334444333221100 11111 22344566666533344433221 14
Q ss_pred EEEEECCCCCeeeeeccCc-----cEEEEeecCCCCCceEEEEEcC----------CCeEEEEECCCCcceeeeeccccc
Q 009203 398 IIGFDAGVGRADFKHQIES-----KCMSVLPNPCDFNLFMVQTGTP----------GRQLRLYDIRLRQTEIHAFGWKQE 462 (540)
Q Consensus 398 i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~ 462 (540)
++++|-.+-+.+..++... .+.+..|..+.. .++++|.. .|.|.+|.+...+.... . .
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~--t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~-v----~ 824 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPN--TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL-V----A 824 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCc--eEEEEEEEeeccCCCCcccceEEEEEEecCCceee-e----e
Confidence 7888888777766555432 233344554421 46666642 46777777766221111 1 0
Q ss_pred cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
-..-.+.+.++..- +|++||.- +..|++|+... .+.++.-..|..++..+...-.|..++.|..=+.|.+-
T Consensus 825 e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~--~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 825 ETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTT--ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eeeeccceeehhhh-CCeEEEec--CcEEEEEEccc--cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 01112344444221 67777654 56799999997 55666666777888888888888889888766666553
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.96 E-value=0.32 Score=45.21 Aligned_cols=226 Identities=17% Similarity=0.178 Sum_probs=124.1
Q ss_pred cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcc
Q 009203 284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSW 363 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 363 (540)
..++.|+.| ..+| |.++++... ........ ...|..+...| +-+.+++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vG----t~~G-l~~~~~~~~--~~~~~i~~-----~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVG----TEDG-LYVYDLSDP--SKPTRILK-----LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEE----ECCC-EEEEEecCC--ccceeEee-----cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccc
Confidence 357788888 7888 899988322 12233332 23499999998 666665554 5999999998655322
Q ss_pred cccee---------ecccCCcceeEEE--eccCCCEEEEEeCCCeEEEEECCCC-----CeeeeeccCccEEEEeecCCC
Q 009203 364 KPKAL---------HRNLHSSAVMGVA--GMQQKQIVLSAGADKRIIGFDAGVG-----RADFKHQIESKCMSVLPNPCD 427 (540)
Q Consensus 364 ~~~~~---------~~~~~~~~v~~l~--~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~ 427 (540)
..... ........+..++ -...+...++......|.+|..... +..........+..+.|.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~-- 148 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG-- 148 (275)
T ss_pred ccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--
Confidence 11000 0111233444444 1233444444455558888877653 3445567778888888885
Q ss_pred CCceEEEEEcCCCeEEEEECCCCcceeeeecccc------ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC
Q 009203 428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ------ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN 501 (540)
Q Consensus 428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~ 501 (540)
..++.|.. ....+.|+.++..... +.... .......++..+..+ ++.+|++. |..-.+.|.. +
T Consensus 149 ---~~i~v~~~-~~f~~idl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~---G 217 (275)
T PF00780_consen 149 ---NKICVGTS-KGFYLIDLNTGSPSEL-LDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN---G 217 (275)
T ss_pred ---CEEEEEeC-CceEEEecCCCCceEE-eCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC---C
Confidence 35666664 4578889986553211 11000 001112234444443 45666654 3334444554 3
Q ss_pred cccc--cccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 502 KPSQ--SIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 502 ~~~~--~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+.+ .+.- ...+.++++ ..++|+..+.+ .|.||++
T Consensus 218 ~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~~-~iEV~~~ 254 (275)
T PF00780_consen 218 EPSRKSTIQW-SSAPQSVAY--SSPYLIAFSSN-SIEVRSL 254 (275)
T ss_pred CcCcccEEEc-CCchhEEEE--ECCEEEEECCC-EEEEEEC
Confidence 3333 2221 224566666 44688877654 4999875
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.03 Score=54.13 Aligned_cols=143 Identities=14% Similarity=0.133 Sum_probs=91.6
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce----EEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 385 QKQIVL-SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF----MVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 385 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
+.++|+ ++.....++-.|+..|+.+.....+..+.-+.+.|+....+ --+.|-.++.|.-||.+-.......+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~-- 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV-- 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee--
Confidence 444444 34455678888999999987766665555555555432211 22456678899999998544311110
Q ss_pred cccc-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203 460 KQES-SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 460 ~~~~-~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
.+.. -.......|.+-..+| +|++|+.+|.|++||--. ...-..+++-..+|..+..+.+|++|+..+..
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhh--hhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 1000 0112234455554444 899999999999999843 44455677888899999999999988776643
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.92 E-value=0.29 Score=44.02 Aligned_cols=186 Identities=11% Similarity=0.051 Sum_probs=109.0
Q ss_pred eEEEEEecCCCcEEEEEeCCc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
...+.|..+ +.++-+.+.-| .|+.+|+.+++...........+ --.++...+.-+.++ -.++...
T Consensus 47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F-------gEGit~~~d~l~qLT-----Wk~~~~f 113 (264)
T PF05096_consen 47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF-------GEGITILGDKLYQLT-----WKEGTGF 113 (264)
T ss_dssp EEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------EEEEEEETTEEEEEE-----SSSSEEE
T ss_pred CccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc-------ceeEEEECCEEEEEE-----ecCCeEE
Confidence 567888664 78888877666 68999999987654443322221 123555533223333 6899999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
+||..+- +.+..+.- .+.=+.++. ++..|+.......++++|..+-+....+........-..++.+.|.
T Consensus 114 ~yd~~tl---~~~~~~~y----~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 114 VYDPNTL---KKIGTFPY----PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EEETTTT---EEEEEEE-----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred EEccccc---eEEEEEec----CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 9999875 44555543 234577774 5556665555678999998876643333322211123456677776
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeeecc----------------CccEEEEeecCCCCCceEEEEEc
Q 009203 384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQI----------------ESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
+|...+-.=....|...|..+|+....... ..-...++++|... .+++||-
T Consensus 184 -~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~--~l~vTGK 250 (264)
T PF05096_consen 184 -NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD--RLFVTGK 250 (264)
T ss_dssp -TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT--EEEEEET
T ss_pred -cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC--EEEEEeC
Confidence 676666666677888999999987543211 23466899988764 5777774
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.84 E-value=0.5 Score=48.78 Aligned_cols=230 Identities=13% Similarity=0.115 Sum_probs=118.9
Q ss_pred CCcEEEEEeCC------ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC------CeE
Q 009203 235 NEQLFVTSALD------GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD------SQI 302 (540)
Q Consensus 235 ~~~~l~tg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d------~~i 302 (540)
.+.+++.|+.+ ..+..+|..++.. ...... .+...-.+++... |...++| +.| .++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w--~~~a~m-----~~~r~~~~~~~~~-~~lYv~G----G~~~~~~~l~~v 351 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEW--SSLAPM-----PSPRCRVGVAVLN-GKLYVVG----GYDSGSDRLSSV 351 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcE--eecCCC-----CcccccccEEEEC-CEEEEEc----cccCCCcccceE
Confidence 35667777766 3577888777632 111111 1112233455553 4556666 556 467
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc-----EEEEecCCCCCccccceeecccCCcce
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA-----VVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
..||..+++-.. +..+.. ..... +++.. +|.+.|+||.||. |-.||..+.+........ ......
T Consensus 352 e~YD~~~~~W~~-~a~M~~---~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---~~r~~~ 421 (571)
T KOG4441|consen 352 ERYDPRTNQWTP-VAPMNT---KRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---TRRSGH 421 (571)
T ss_pred EEecCCCCceec-cCCccC---ccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCC---cceeee
Confidence 788888763211 111211 11112 22222 7889999999864 778888877631111110 011111
Q ss_pred eEEEeccCCCEEEEEeCCC------eEEEEECCCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCC-----eEEE
Q 009203 378 MGVAGMQQKQIVLSAGADK------RIIGFDAGVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGR-----QLRL 444 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg-----~v~i 444 (540)
..+.+ +|.+.++|+.++ ++..||..++.-...... .-....++.-.. .+.+.|+.|+ +|..
T Consensus 422 gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~----~iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 422 GVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNG----KIYVVGGFDGTSALSSVER 495 (571)
T ss_pred EEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECC----EEEEECCccCCCccceEEE
Confidence 22222 678888888554 578899887765332211 111112222221 5777777766 3777
Q ss_pred EECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeccCC
Q 009203 445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-----VIHLFDIRYS 499 (540)
Q Consensus 445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-----~i~iwd~~~~ 499 (540)
||..+.+=... .........+..+.+ ++...++|+.|| +|..||..+.
T Consensus 496 ydp~~~~W~~v-----~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 496 YDPETNQWTMV-----APMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EcCCCCceeEc-----ccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 88876542111 112222333333344 677788888776 4666766653
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.0042 Score=64.81 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=73.5
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
..++.|+..|.|-.+|+...-.... ....-.++|++++|+.+|..++.|-.+|.|.+||+.. +++++.+..|
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~------~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~--~k~l~~i~e~ 171 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLH------QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR--AKILKVITEH 171 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhh------cCCccCCcceeeEecCCCceeccccCCCcEEEEEccC--Ccceeeeeec
Confidence 3688899999999999875422111 1223467899999999999999999999999999997 6777777766
Q ss_pred ccceeEE---EEcCCCCEEEEEEcCCcEEEEe
Q 009203 511 QKRVFKA---VWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 511 ~~~i~~l---~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
..+.+++ .|..++..+.++...|. +|+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 6655544 44556667888877775 554
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.045 Score=48.79 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe-EEEEECCCCcceeeeecc-ccccCccccCeEEEEEcCCCCEEE
Q 009203 406 GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ-LRLYDIRLRQTEIHAFGW-KQESSESQSALINQSWSPDGLYIT 483 (540)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~ 483 (540)
|+++........+..+.++|..+ .-++.+-.-|+ ..+||..+.+.+...... ...+-+|. .|||||.+|.
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LY 129 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLY 129 (366)
T ss_pred CceeeeeecccccCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEE
Confidence 55555666666777788888664 35555555554 678999887755433211 11223343 7999999998
Q ss_pred EEeCC-----CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 484 SGSAD-----PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 484 sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
..-.| |.|-|||.+.. ...+..+..|.-....+.|.+||+.|+.+.
T Consensus 130 ATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred eecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 76443 78999999964 567888888888889999999999888763
No 393
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.72 E-value=0.67 Score=45.32 Aligned_cols=154 Identities=8% Similarity=0.102 Sum_probs=89.7
Q ss_pred cCCCcEEEEEeCCceEEEEEcCCCCCc-ceeecccccCCCCCCCCceeEEEec-----CCCeEEEEeecCCCCCeEEEEe
Q 009203 233 PVNEQLFVTSALDGVIRLWQLQSRGSG-ASLLSTTDCLSPKHRRWPEDIAWHP-----QGNSLFSAHTADSGDSQISVLN 306 (540)
Q Consensus 233 pd~~~~l~tg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~-----~~~~l~s~~~~~~~d~~i~vwd 306 (540)
+++...+++|+..|.++||+....+.. ..+... ..-..+|..++.-. +...||+ -.-..+.||.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-----~~l~~PILqv~~G~F~s~~~~~~LaV-----LhP~kl~vY~ 103 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-----TQLKDPILQVECGKFVSGSEDLQLAV-----LHPRKLSVYS 103 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEE-----EecCCcEEEEEeccccCCCCcceEEE-----ecCCEEEEEE
Confidence 334678999999999999998654421 112111 12345677776532 2335555 4678888888
Q ss_pred cCCCCCc------eeEEeecCCCCcccceeEEEEeCC---C-CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 307 LNKTKGR------ACVTFLDDKPHVKGIINSIIFLPW---E-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 307 ~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~p~---~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+....+. ..+..+..+.- ......+++-|- . ..+|..-+.||.+.+|+-+.-.. ... .. ..--
T Consensus 104 v~~~~g~~~~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~-lp-~~ll 176 (418)
T PF14727_consen 104 VSLVDGTVEHGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRF-LP-DFLL 176 (418)
T ss_pred EEecCCCcccCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEE-cC-CCCC
Confidence 7432211 12222222111 112333433331 2 46788889999999999876431 111 01 1222
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDA 403 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~ 403 (540)
...++|.+..+.|++++.+..+..|..
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecH
Confidence 345778888888999998888888865
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.68 E-value=0.42 Score=46.03 Aligned_cols=241 Identities=11% Similarity=0.066 Sum_probs=102.8
Q ss_pred CcEEEEEe-CCceEEEEEcCCCCCcceeeccccc---CCCCCCCCceeEEEecCCCeEEEEeec--CCCCCeEEEEecCC
Q 009203 236 EQLFVTSA-LDGVIRLWQLQSRGSGASLLSTTDC---LSPKHRRWPEDIAWHPQGNSLFSAHTA--DSGDSQISVLNLNK 309 (540)
Q Consensus 236 ~~~l~tg~-~dg~v~iw~~~~~~~~~~~~~~~~~---~~~~h~~~V~~~~~~~~~~~l~s~~~~--~~~d~~i~vwd~~~ 309 (540)
.++|+..+ ..+.|.|.|+.+.....++....+. .....-.....+-.-|+|+.++++... |..-|-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 44555554 7789999999865544443332221 000000112234445789888887322 33445677777775
Q ss_pred CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec--------------------CCcEEEEecCCCCCccccceee
Q 009203 310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS--------------------DHAVVLWSERDAEDSWKPKALH 369 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~ 369 (540)
. ......+........-..+-|.| ..+.++|... ..++.+||+.+.+. .+.+.
T Consensus 167 f---~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~---~Q~id 239 (461)
T PF05694_consen 167 F---EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL---LQTID 239 (461)
T ss_dssp -----EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE---EEEEE
T ss_pred c---cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE---eeEEe
Confidence 3 33333333222233456778888 7778887642 45799999999886 44444
Q ss_pred cccCCcceeEEEec--cCCCEEEE-EeCCCeEEEEEC-CCCCe----eeeec-----------c-------CccEEEEee
Q 009203 370 RNLHSSAVMGVAGM--QQKQIVLS-AGADKRIIGFDA-GVGRA----DFKHQ-----------I-------ESKCMSVLP 423 (540)
Q Consensus 370 ~~~~~~~v~~l~~s--~~~~~l~~-~~~dg~i~iwd~-~~~~~----~~~~~-----------~-------~~~~~~~~~ 423 (540)
.......+..+.|. |+..+=++ +....+|..|-- ..++- +.... . ..-+..+..
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 32222345667774 44444333 333445544433 33321 11110 0 234567777
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc--c--------c--cCccccCeEEEEEcCCCCEEEEE
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK--Q--------E--SSESQSALINQSWSPDGLYITSG 485 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~--------~--~~~~~~~v~~~~~sp~g~~l~sg 485 (540)
+.++. .+.+++-..|.|+.||+.....+...-... . . -..-.+...-+..|.||+.|...
T Consensus 320 SlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 320 SLDDR--FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -TTS---EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ccCCC--EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 77772 344666778999999999866443321100 0 0 01122345678889999887765
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.046 Score=57.49 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc
Q 009203 286 GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP 365 (540)
Q Consensus 286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 365 (540)
+..++.| +..|.+...|+... +..+....+..++|++++|+. +|.+++.|-.+|.|.+||+..+.. .
T Consensus 99 ~~~ivi~----Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~---l 165 (1206)
T KOG2079|consen 99 VVPIVIG----TSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKI---L 165 (1206)
T ss_pred eeeEEEE----cCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcc---e
Confidence 4568888 88899999888754 221211223467899999999 999999999999999999999775 3
Q ss_pred ceeecccCCcc---eeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203 366 KALHRNLHSSA---VMGVAGMQQKQIVLSAGADKRIIGFDA 403 (540)
Q Consensus 366 ~~~~~~~~~~~---v~~l~~s~~~~~l~~~~~dg~i~iwd~ 403 (540)
+.+.. |..+ |.-+.+..++..++++...|. +|.+
T Consensus 166 ~~i~e--~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITE--HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeee--cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44433 3333 333444455667888887776 4544
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.59 E-value=0.18 Score=46.10 Aligned_cols=149 Identities=11% Similarity=0.020 Sum_probs=88.5
Q ss_pred ceeEEEeccCCCEEEEEe---CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEE-CCCCc
Q 009203 376 AVMGVAGMQQKQIVLSAG---ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD-IRLRQ 451 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d-~~~~~ 451 (540)
.+.+.+++++|+.++... ....++++.... .............-.|++++ .+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g~~l~~PS~d~~g---~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTGGSLTRPSWDPDG---WVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccCCccccccccCCC---CEEEEEcCCCceEEEEecCCCc
Confidence 688999999999887766 333466655443 22222233466677788875 4555555555666663 33333
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEe---CCCcEEEEeccCCC-C------cccccccccccceeEEEEcC
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGS---ADPVIHLFDIRYSA-N------KPSQSIRAHQKRVFKAVWHY 521 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~---~dg~i~iwd~~~~~-~------~~~~~~~~h~~~i~~l~~s~ 521 (540)
....... ...-...|+.+.+||||..+|... .++.|.+--+.... + .++.........+.+++|.+
T Consensus 100 ~~~~~v~----~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 100 GEPVEVD----WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred ceeEEec----ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 2221111 111112899999999999877654 35778777665321 2 11112223345789999999
Q ss_pred CCCEEEEEEcCC
Q 009203 522 SHPLLISISSDL 533 (540)
Q Consensus 522 ~~~~l~s~~~dg 533 (540)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998877765444
No 397
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.57 E-value=0.48 Score=43.16 Aligned_cols=206 Identities=10% Similarity=0.117 Sum_probs=113.8
Q ss_pred eeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCc--cccceeecc-----cCCcceeEEEeccCCC------------EE
Q 009203 329 INSIIFLPWENPCFATGGSDHAVVLWSERDAEDS--WKPKALHRN-----LHSSAVMGVAGMQQKQ------------IV 389 (540)
Q Consensus 329 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~-----~~~~~v~~l~~s~~~~------------~l 389 (540)
-+.|+++| .+.+-++...-+...+||....... .....+... ......+.+.|+.... .+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 67899999 7777788777789999999721100 001122211 1234677888864332 36
Q ss_pred EEEeCCCeEEEEECCCCCe-----eeeec--cCccEE-EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee-eeccc
Q 009203 390 LSAGADKRIIGFDAGVGRA-----DFKHQ--IESKCM-SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWK 460 (540)
Q Consensus 390 ~~~~~dg~i~iwd~~~~~~-----~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~ 460 (540)
+.+++||+|.-|...-+.. ..... ....+. .++.........+.++-...++|.+||-.-...... .+. .
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~-D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI-D 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc-C
Confidence 7788999999998643322 11111 112221 222222211224556667788999998653321110 000 0
Q ss_pred cccC-----------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc--ccccceeEEEEcC------
Q 009203 461 QESS-----------ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR--AHQKRVFKAVWHY------ 521 (540)
Q Consensus 461 ~~~~-----------~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~i~~l~~s~------ 521 (540)
..+. +..-.|+-..-.+++..=+.|..-|.|-+||+. +..++++. +.-...|.|+..|
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~---G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN---GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC---CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 0000 001112222223333333344455789999998 67777663 3344678888866
Q ss_pred CCCEEEEEEcCCcEEEEe
Q 009203 522 SHPLLISISSDLNIGLHK 539 (540)
Q Consensus 522 ~~~~l~s~~~dg~v~iw~ 539 (540)
.|.+|+---.||+|..||
T Consensus 260 sg~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYD 277 (336)
T ss_pred CCCeEEeecCCceeEEec
Confidence 456777777899999987
No 398
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.56 E-value=0.59 Score=42.61 Aligned_cols=232 Identities=12% Similarity=0.136 Sum_probs=125.4
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCC----CCceeEEeecCCC--CcccceeEEEEeCCCCC----------
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKT----KGRACVTFLDDKP--HVKGIINSIIFLPWENP---------- 340 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~---------- 340 (540)
-+.|+|+|.+.+-++. ...+...+||.... .....+..+...+ ...+..+.+.|+. ...
T Consensus 25 ~WGia~~p~~~~WVad----ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~ 99 (336)
T TIGR03118 25 AWGLSYRPGGPFWVAN----TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITG 99 (336)
T ss_pred cceeEecCCCCEEEec----CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccc
Confidence 4789999999877777 88899999998711 1112233333211 1234678888875 332
Q ss_pred --EEEEEecCCcEEEEecCCCCCc--cccceeecccCCcceeEEEecc--CCCEEEEEe-CCCeEEEEECCCCCeeeeec
Q 009203 341 --CFATGGSDHAVVLWSERDAEDS--WKPKALHRNLHSSAVMGVAGMQ--QKQIVLSAG-ADKRIIGFDAGVGRADFKHQ 413 (540)
Q Consensus 341 --~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 413 (540)
.++.++.||+|.-|...-.... .....+.......-...+++.. .+.+|+.+. ..++|.+||-.-.+......
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence 3567788999999986433210 0011121111122234555543 345555543 47788888865332211100
Q ss_pred cCccEEEEeecCC----------------CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 414 IESKCMSVLPNPC----------------DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 414 ~~~~~~~~~~~~~----------------~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
.....+-.-+.|. +.....=+.|..-|.|-+||+... .+..+ ...+.-...+.|+..|
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~----as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRV----ASSGRLNAPWGLAIAP 253 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEe----ccCCcccCCceeeeCh
Confidence 0000000011111 111012233444578999998743 22222 1233445677887766
Q ss_pred ------CCCEEEEEeCCCcEEEEeccCCCCcccccccccc------cceeEEEEcC
Q 009203 478 ------DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ------KRVFKAVWHY 521 (540)
Q Consensus 478 ------~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~------~~i~~l~~s~ 521 (540)
.|.+|+---.||+|..||..+ +..+..+.... ..++.|.|..
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~s--G~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQS--GAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCC--CceeeeecCCCCCeEEecCeEEeeeCC
Confidence 466777767799999999987 55555554322 2568888865
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.55 E-value=0.0091 Score=37.80 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=29.3
Q ss_pred ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC
Q 009203 326 KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE 360 (540)
Q Consensus 326 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 360 (540)
...|.+++|+| ..++||.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCc
Confidence 35699999999 9999999999999999999 444
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.54 E-value=1 Score=46.65 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=75.4
Q ss_pred CCCEEEEEecCC-----cEEEEecCCCCCccccceeecccCC-cceeEEEeccCCCEEEEEeCCC---------------
Q 009203 338 ENPCFATGGSDH-----AVVLWSERDAEDSWKPKALHRNLHS-SAVMGVAGMQQKQIVLSAGADK--------------- 396 (540)
Q Consensus 338 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~dg--------------- 396 (540)
++.+.+.||.++ ++..||..+... ..+...... .....+++ +|...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W----~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW----KMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE----EECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccc
Confidence 677888888764 478899887642 111110011 11112222 577777777542
Q ss_pred --------eEEEEECCCCCeeeeecc--C-ccEEEEeecCCCCCceEEEEEcCC------CeEEEEECCC-Ccceeeeec
Q 009203 397 --------RIIGFDAGVGRADFKHQI--E-SKCMSVLPNPCDFNLFMVQTGTPG------RQLRLYDIRL-RQTEIHAFG 458 (540)
Q Consensus 397 --------~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~-~~~~~~~~~ 458 (540)
.+..||..+++-...... . .....+..+. .+.+.|+.+ ..+..||..+ .+ ...
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~-----~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~-- 495 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKD-----DIYVVCDIKDEKNVKTCIFRYNTNTYNG--WEL-- 495 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcccccCcEEEECC-----EEEEEeCCCCCCccceeEEEecCCCCCC--eeE--
Confidence 477788876543222111 1 1111122221 455556543 2467898886 32 111
Q ss_pred cccccCccccCeEEEEEcCCCCEEEEEeCCC--cEEEEeccCC
Q 009203 459 WKQESSESQSALINQSWSPDGLYITSGSADP--VIHLFDIRYS 499 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg--~i~iwd~~~~ 499 (540)
...+.........+.+ +|++.++|+.+| .+..||..+.
T Consensus 496 -~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 496 -ITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred -ccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 1122222233333444 788999999888 7778888874
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.033 Score=53.89 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=90.4
Q ss_pred EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCC-------EEEEEeCCCeEEEEECCCCCe--ee-
Q 009203 341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-------IVLSAGADKRIIGFDAGVGRA--DF- 410 (540)
Q Consensus 341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-------~l~~~~~dg~i~iwd~~~~~~--~~- 410 (540)
+|.++.....++-.|++.|+.+.... .+. .|+-+.+.|+.+ .-+.|-.|..|+-||++-... +.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk-----~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWK-----FED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEee-----ccC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 34555666678888999988532222 132 377777777542 223466678899999984322 11
Q ss_pred --e--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203 411 --K--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 411 --~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
. +.......|++-..++ ++++|+.+|.|++||-- +.... ..+++-..+|..|..+.+|++|++.+
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG----~IvvgS~~GdIRLYdri-~~~AK------TAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG----YIVVGSLKGDIRLYDRI-GRRAK------TALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred eeccccccccccceeeecCCc----eEEEeecCCcEEeehhh-hhhhh------hcccccCCceeeEEeeccCcEEEEec
Confidence 1 2223444555556665 89999999999999983 33222 14567778999999999999987664
Q ss_pred CCCcEEEEecc
Q 009203 487 ADPVIHLFDIR 497 (540)
Q Consensus 487 ~dg~i~iwd~~ 497 (540)
+..+.+.++.
T Consensus 491 -~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 -KTYLLLIDTL 500 (644)
T ss_pred -ccEEEEEEEe
Confidence 5556666654
No 402
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.68 Score=41.84 Aligned_cols=278 Identities=8% Similarity=0.027 Sum_probs=153.1
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
+-+..+.++. .+...+..+.-++|.|+.+......+ ..... . + ..-.|.-.|++..++ ..+.-+.
T Consensus 87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~-~~lnt---~--g--yaygv~vsGn~aYVa----dlddgfL 151 (370)
T COG5276 87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLI-GFLNT---D--G--YAYGVYVSGNYAYVA----DLDDGFL 151 (370)
T ss_pred hhhheeEecc---cEEEEEcCCCceEEEeccCCCCccee-ccccC---C--c--eEEEEEecCCEEEEe----eccCcEE
Confidence 4566777764 46666677778999999887654332 11110 0 1 223444568888887 7677788
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
+.|+.+.+.....-.... ....-..++. .|++-..+..|+-+.|-|+..... +..+........+.++..+
T Consensus 152 ivdvsdpssP~lagrya~---~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~s---Pvli~~~n~g~g~~sv~vs 222 (370)
T COG5276 152 IVDVSDPSSPQLAGRYAL---PGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHS---PVLIGSYNTGPGTYSVSVS 222 (370)
T ss_pred EEECCCCCCceeeeeecc---CCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCC---CeEEEEEecCCceEEEEec
Confidence 999988766555544443 1233356666 467777788899999999998764 3333222233367777777
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEE--eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 384 QQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSV--LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
++..+++.. +--+.+-|..+.+.... ........++ ..-+. .+......+..+.+-|+.+...+...-
T Consensus 223 dnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~----~~~Yvadga~gl~~idisnp~spfl~s-- 294 (370)
T COG5276 223 DNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSG----EYAYVADGAKGLPIIDISNPPSPFLSS-- 294 (370)
T ss_pred CCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceeccc----ceeeeeccccCceeEeccCCCCCchhc--
Confidence 655554443 33577778776553322 2222222222 11122 355556666677777777654332111
Q ss_pred ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+......-..+.. -|.++..+..+ ...+-+.... +......+....+.+.+.+-+.+.+.+...++-+.||+
T Consensus 295 --s~~t~g~~a~gi~a--y~~y~yiadkn-~g~vV~~s~~--s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 295 --SLDTAGYQAAGIRA--YGNYNYIADKN-TGAVVDASPP--SMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred --cccCCCccccceEE--ecCeeEeccCC-ceEEEeCCCh--hhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 00001111222333 34555555444 4445555431 11111122222234444444566888889999999997
Q ss_pred C
Q 009203 540 I 540 (540)
Q Consensus 540 l 540 (540)
+
T Consensus 368 ~ 368 (370)
T COG5276 368 Y 368 (370)
T ss_pred e
Confidence 5
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.41 E-value=0.016 Score=36.64 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=30.6
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA 408 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 408 (540)
....|.+++|+|...+|+.++.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4567999999999999999999999999999 4543
No 404
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.33 E-value=1.2 Score=43.51 Aligned_cols=153 Identities=8% Similarity=0.072 Sum_probs=79.4
Q ss_pred CceEEEEEecCCCcEEEEEe-----------CCc-eEEEEEcCCCC-CcceeecccccCCCCCCCCceeEEEecCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSA-----------LDG-VIRLWQLQSRG-SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLF 290 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~-----------~dg-~v~iw~~~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 290 (540)
.....|+|.++ |+++++-. ..+ .|.+++-.++. ......... ........++|.++| +++
T Consensus 14 ~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-----~~l~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-----EELSMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-----cCCCCccceeEecCC-EEE
Confidence 45678899985 88776642 123 67666543322 111111100 112345789999988 444
Q ss_pred EEeecCCCCCeEEEEecCCC-----CCceeEEeecCC-CCcccceeEEEEeCCCCCEEEEEecC----------------
Q 009203 291 SAHTADSGDSQISVLNLNKT-----KGRACVTFLDDK-PHVKGIINSIIFLPWENPCFATGGSD---------------- 348 (540)
Q Consensus 291 s~~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~d---------------- 348 (540)
+ ......++.|.+.. +....+..+... .++......++|.| ++.+.++-+..
T Consensus 87 ~-----~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 87 A-----TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred e-----CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCccc
Confidence 4 44443334455421 111122223221 11123477899999 88776655421
Q ss_pred ---CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203 349 ---HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD 395 (540)
Q Consensus 349 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 395 (540)
|.|.-++..++. ...+. .+ ......++|+++|+++++-..+
T Consensus 161 ~~~g~i~r~~pdg~~----~e~~a-~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 161 GLGGGLFRYNPDGGK----LRVVA-HG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCceEEEEecCCCe----EEEEe-cC-cCCCccceECCCCCEEEEccCC
Confidence 345555555543 12221 22 2345789999999887765433
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.99 E-value=0.24 Score=50.64 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=70.8
Q ss_pred eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe--CCCCCEEEEEecCCcEEEEec
Q 009203 279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL--PWENPCFATGGSDHAVVLWSE 356 (540)
Q Consensus 279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~ 356 (540)
-+.-+.-++.-++- +....+.|||...+. .+....+ ...+.|.++.|. | +++.+++.|..+.|.+|.-
T Consensus 34 li~gss~~k~a~V~----~~~~~LtIWD~~~~~-lE~~~~f----~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 34 LISGSSIKKIAVVD----SSRSELTIWDTRSGV-LEYEESF----SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred eEeecccCcEEEEE----CCCCEEEEEEcCCcE-EEEeeee----cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEc
Confidence 34444445544444 677789999999762 1111222 135679999986 5 7788888888899988754
Q ss_pred C-----CCCCccc-cceeecccCC-cceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203 357 R-----DAEDSWK-PKALHRNLHS-SAVMGVAGMQQKQIVLSAGADKRIIGFDAG 404 (540)
Q Consensus 357 ~-----~~~~~~~-~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~ 404 (540)
. .....|. +..+....++ .+|.+..|.++|.+++.++ ..+.++|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 2 2222221 1222223344 6799999999888776554 378888754
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.97 E-value=0.16 Score=50.17 Aligned_cols=156 Identities=14% Similarity=0.066 Sum_probs=88.8
Q ss_pred ceeEEEeccCCCEEEEEe---CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce-EEEEEcCCCeEEEEECCCCc
Q 009203 376 AVMGVAGMQQKQIVLSAG---ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF-MVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~ 451 (540)
++..++|. ||+.++... .+|.+++=|.. ....-.++..+.|.|.+.... .+++-.....|.+|.+....
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCCcc------EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 58889998 566555432 12333222211 122224677888888643322 44555567899999987322
Q ss_pred ceeeeecccc--ccC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEE
Q 009203 452 TEIHAFGWKQ--ESS-ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLIS 528 (540)
Q Consensus 452 ~~~~~~~~~~--~~~-~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s 528 (540)
.....+-..+ ++. ...--..++.|+|....|++-.....-.++++.....+....++ ..+-|.|.+|.+||+.|+.
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEE
Confidence 1111100000 000 00111245789999999887766665567777754334444444 4567999999999987765
Q ss_pred E-EcCCcEEEEe
Q 009203 529 I-SSDLNIGLHK 539 (540)
Q Consensus 529 ~-~~dg~v~iw~ 539 (540)
+ |..=.-+|||
T Consensus 173 AvGSsLHSyiWd 184 (671)
T PF15390_consen 173 AVGSSLHSYIWD 184 (671)
T ss_pred EeCCeEEEEEec
Confidence 5 4444567886
No 407
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.85 E-value=0.026 Score=48.66 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=76.4
Q ss_pred EEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee--eeccCccEE
Q 009203 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF--KHQIESKCM 419 (540)
Q Consensus 342 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~ 419 (540)
+..-+.||.|+-++++..+...+...+ +.....-+. -+..+++|+.+|.|++|....-.... .......+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~----~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERF----IDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID 105 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhh----hhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccce
Confidence 334466788888877764421111111 222211112 34678999999999999886211111 111112222
Q ss_pred EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc-cCeEEEEEcCCCCEEEEE--eCCCcEEEEec
Q 009203 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ-SALINQSWSPDGLYITSG--SADPVIHLFDI 496 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~sg--~~dg~i~iwd~ 496 (540)
+...... ...+..+++.+|.|+.|++.-.+..-. ...|. .++.....+..+++|+.. |.|..++.|++
T Consensus 106 ~~Ip~~~--~~~~~c~~~~dg~ir~~n~~p~k~~g~-------~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 106 LGIPNGR--DSSLGCVGAQDGRIRACNIKPNKVLGY-------VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ecccccc--ccceeEEeccCCceeeeccccCceeee-------eccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 2222222 225888999999999999975543221 12333 344444445555666666 66667777776
Q ss_pred cC
Q 009203 497 RY 498 (540)
Q Consensus 497 ~~ 498 (540)
..
T Consensus 177 e~ 178 (238)
T KOG2444|consen 177 EK 178 (238)
T ss_pred hh
Confidence 64
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=1.4 Score=40.04 Aligned_cols=202 Identities=12% Similarity=0.065 Sum_probs=116.3
Q ss_pred CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203 272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV 351 (540)
Q Consensus 272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 351 (540)
|-...|.++.|+|+.+.|++. .....-.||=-..| ..+..+.-... ...-.|.+.. ++.+.++--.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav----~n~p~~iVElt~~G---dlirtiPL~g~--~DpE~Ieyig-~n~fvi~dER~~~l 152 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAV----TNKPAAIVELTKEG---DLIRTIPLTGF--SDPETIEYIG-GNQFVIVDERDRAL 152 (316)
T ss_pred cccccccceeeCCCcceEEEe----cCCCceEEEEecCC---ceEEEeccccc--CChhHeEEec-CCEEEEEehhcceE
Confidence 445559999999999999887 56665555533334 44555443222 2245677876 77777777778888
Q ss_pred EEEecCCCCCccccce--ee--cccC-CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-eeeecc----------C
Q 009203 352 VLWSERDAEDSWKPKA--LH--RNLH-SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DFKHQI----------E 415 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~--~~--~~~~-~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~----------~ 415 (540)
.++.+........... +. ...+ +.....++|.|....|+.+-.-.-+.||....+.. +..+.. -
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 8887766532211111 11 1122 56678999999999998888877777777664331 111111 1
Q ss_pred ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee-ccccccCccccCeEEEEEcCCCCEEEEE
Q 009203 416 SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF-GWKQESSESQSALINQSWSPDGLYITSG 485 (540)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~sg 485 (540)
..+.++.+++... .+++-+..++.+.-.|....-.....+ +-...+...-...-.++..++|.+.+++
T Consensus 233 ~DvSgl~~~~~~~--~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 233 LDVSGLEFNAITN--SLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred eccccceecCCCC--cEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 2334556665432 477777777777777776443111111 0000111111234567777766554443
No 409
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.84 E-value=3.1 Score=44.14 Aligned_cols=260 Identities=9% Similarity=0.004 Sum_probs=130.4
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC----CCeEEEEeec
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ----GNSLFSAHTA 295 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~s~~~~ 295 (540)
-|-..-..|+.+-++ .+|++|+.-|.=++-.+.+...........+. -..-++|.+++.-.. ...|++++-
T Consensus 303 lge~siassi~~L~n--g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet--~~NLgPI~Dm~Vvd~d~q~q~qivtCsG- 377 (1096)
T KOG1897|consen 303 LGETSIASSINYLDN--GVLFVGSRFGDSQLIKLNTEPDVGSYVVILET--FVNLGPIVDMCVVDLDRQGQGQIVTCSG- 377 (1096)
T ss_pred cCCcchhhhhhcccC--ceEEEeccCCceeeEEccccCCCCchhhhhhh--cccccceeeEEEEeccccCCceEEEEeC-
Confidence 455556677777763 47888888887777777655433222111111 133467888877542 236666632
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEE--EeCCCCCEEEEEecC-------------------------
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSII--FLPWENPCFATGGSD------------------------- 348 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~p~~~~~l~s~~~d------------------------- 348 (540)
...||++++..-.-+-.......+.+ . ..++.+. +.+.-.++|+.+-.+
T Consensus 378 a~kdgSLRiiRngi~I~e~A~i~l~G---i-kg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~T 453 (1096)
T KOG1897|consen 378 AFKDGSLRIIRNGIGIDELASIDLPG---I-KGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQT 453 (1096)
T ss_pred CCCCCcEEEEecccccceeeEeecCC---c-cceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccccccccCce
Confidence 25789999886543311111111221 1 1134443 222111222222111
Q ss_pred ----------------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--ee
Q 009203 349 ----------------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--DF 410 (540)
Q Consensus 349 ----------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~ 410 (540)
..|++++-......|. ....++....+.+...++.++.++.+...++..+.. ..
T Consensus 454 if~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~--------~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~ 525 (1096)
T KOG1897|consen 454 IFCSTINGNQLVQVTSNSIRLVSSAGLRSEWR--------PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVS 525 (1096)
T ss_pred EEEEccCCceEEEEecccEEEEcchhhhhccc--------CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeee
Confidence 1233333321110000 122333333444555677777777777777766553 22
Q ss_pred eeccCccEEEEeecCCCCCc---eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203 411 KHQIESKCMSVLPNPCDFNL---FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA 487 (540)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 487 (540)
.......+.|+.++|.+... .+++.|..+..+.+.-........... ......-...|.-..|--|..+|.++..
T Consensus 526 ~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~--~l~~~~iPRSIl~~~~e~d~~yLlvalg 603 (1096)
T KOG1897|consen 526 HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE--QLSGEIIPRSILLTTFEGDIHYLLVALG 603 (1096)
T ss_pred eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee--ccCCCccchheeeEEeeccceEEEEEcC
Confidence 34445666677666653332 378888877665544332211111110 0011112234555566667889999999
Q ss_pred CCcEEEEeccC
Q 009203 488 DPVIHLFDIRY 498 (540)
Q Consensus 488 dg~i~iwd~~~ 498 (540)
||.+.-|.++.
T Consensus 604 dG~l~~fv~d~ 614 (1096)
T KOG1897|consen 604 DGALLYFVLDI 614 (1096)
T ss_pred CceEEEEEEEc
Confidence 99998777765
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.15 Score=54.26 Aligned_cols=143 Identities=12% Similarity=0.141 Sum_probs=91.8
Q ss_pred cceeEEEeccCCCEEEEE--eCCCeEEEEECCCCCe--------ee----eeccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203 375 SAVMGVAGMQQKQIVLSA--GADKRIIGFDAGVGRA--------DF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGR 440 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~--~~dg~i~iwd~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 440 (540)
..+..+...+|+...++. +.+-.|..||++.-.. +. .........++.|+|.-+ ...+++..|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--~n~av~l~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--LNSAVDLSDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--chhhhhcccc
Confidence 345566666776655443 3344799999975322 11 122234556777887543 3567778889
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---cc-ccceeE
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AH-QKRVFK 516 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h-~~~i~~ 516 (540)
.|++..+.........+ ......++++|+|.|+.++.|-..|++.-|...- +....+. .. ...|.+
T Consensus 179 sl~V~~~~~~~~~v~s~-------p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l---eik~~ip~Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSF-------PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL---EIKSEIPEPPVEENYRVLS 248 (1405)
T ss_pred chhhhhhhhhhhhhccc-------CcccceeeEEeccccceeeEecCCCeEEEeeccc---ceeecccCCCcCCCcceeE
Confidence 98888776433222211 2345789999999999999999999999887763 2222222 11 467999
Q ss_pred EEEcCCCCEEEEE
Q 009203 517 AVWHYSHPLLISI 529 (540)
Q Consensus 517 l~~s~~~~~l~s~ 529 (540)
|+|-..-.+||+-
T Consensus 249 v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 249 VTWLSTQEFLVVY 261 (1405)
T ss_pred EEEecceeEEEEe
Confidence 9997766666543
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.61 E-value=2.5 Score=41.25 Aligned_cols=151 Identities=7% Similarity=0.085 Sum_probs=77.1
Q ss_pred ceeEEEecCCCeEEEEeec-----C--CCCC-eEEEEecCCCCCc-eeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203 277 PEDIAWHPQGNSLFSAHTA-----D--SGDS-QISVLNLNKTKGR-ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS 347 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~-----~--~~d~-~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 347 (540)
...|+|.++|+++++-... + ...+ .|.+++-..+... .....+.. .-.....+++.+ ++ ++++ ..
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~l~~p~Gi~~~~-~G-lyV~-~~ 89 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---ELSMVTGLAVAV-GG-VYVA-TP 89 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---CCCCccceeEec-CC-EEEe-CC
Confidence 5679999999987774100 0 0122 7777765433222 12223322 123468899988 77 5554 44
Q ss_pred CCcEEEEecCCCCCcc-ccceeec-c-c----CCcceeEEEeccCCCEEEEEeCC-------------------CeEEEE
Q 009203 348 DHAVVLWSERDAEDSW-KPKALHR-N-L----HSSAVMGVAGMQQKQIVLSAGAD-------------------KRIIGF 401 (540)
Q Consensus 348 dg~i~iwd~~~~~~~~-~~~~~~~-~-~----~~~~v~~l~~s~~~~~l~~~~~d-------------------g~i~iw 401 (540)
....++.|........ ....+.. . . +......++|.|||.+.++.+.. |.|..+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 3333344554321110 1111211 1 1 23447789999999877765521 456666
Q ss_pred ECCCCCeeeeeccCccEEEEeecCCCCCceEEEEE
Q 009203 402 DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 402 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 436 (540)
|...++.............++|++.+ .++++-
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G---~l~~td 201 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWG---DVFFCD 201 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCC---CEEEEc
Confidence 66654432222222334577888765 455443
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.41 E-value=4.6 Score=43.18 Aligned_cols=122 Identities=7% Similarity=0.039 Sum_probs=63.3
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCC-CCCCCCceeEEEec----------------CCCeEEEEeecCCCCC
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-PKHRRWPEDIAWHP----------------QGNSLFSAHTADSGDS 300 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~~----------------~~~~l~s~~~~~~~d~ 300 (540)
.|..++.++.|.-.|..+++.+.++........ ..| .....+++.. ++..|+.+ +.|+
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~----T~Dg 270 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP----TSDA 270 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEe----cCCC
Confidence 455556677777777777776666543321100 001 0012233321 23467777 8899
Q ss_pred eEEEEecCCCCCceeEEeecCC---------CCcccceeEEEEeCC-CCCEEEEEec----------CCcEEEEecCCCC
Q 009203 301 QISVLNLNKTKGRACVTFLDDK---------PHVKGIINSIIFLPW-ENPCFATGGS----------DHAVVLWSERDAE 360 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~p~-~~~~l~s~~~----------dg~i~iwd~~~~~ 360 (540)
.|.-.|..+++. +-.+... ......-..+.-.|. .+..++.|+. +|.|+-+|..+++
T Consensus 271 ~LiALDA~TGk~---~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 271 RLIALDADTGKL---CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred eEEEEECCCCCE---EEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 999999998832 2222110 000000000111110 1345556642 6889999999999
Q ss_pred Cccccce
Q 009203 361 DSWKPKA 367 (540)
Q Consensus 361 ~~~~~~~ 367 (540)
..|....
T Consensus 348 l~W~~~~ 354 (764)
T TIGR03074 348 LVWAWDP 354 (764)
T ss_pred EeeEEec
Confidence 8776653
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.27 E-value=0.073 Score=32.59 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=27.8
Q ss_pred CceEEEEEecCCC--cEEEEEeCCceEEEEEcCC
Q 009203 224 RKLRSLSLNPVNE--QLFVTSALDGVIRLWQLQS 255 (540)
Q Consensus 224 ~~V~~l~~spd~~--~~l~tg~~dg~v~iw~~~~ 255 (540)
+.|.++.|+|.++ .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998656 6999999999999999985
No 414
>PHA03098 kelch-like protein; Provisional
Probab=95.26 E-value=0.83 Score=47.23 Aligned_cols=183 Identities=9% Similarity=0.074 Sum_probs=84.9
Q ss_pred CCCEEEEEecCC------cEEEEecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCC-----CeEEEEECCC
Q 009203 338 ENPCFATGGSDH------AVVLWSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGV 405 (540)
Q Consensus 338 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~ 405 (540)
++.+++.|+.++ .+..||..+... ..+.... .......+.+ ++..++.|+.+ ..+..||..+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW----NKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee----eECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCC
Confidence 556666666532 467788776653 1111100 1111122222 56777777765 3477888876
Q ss_pred CCeeeeecc--CccEEEEeecCCCCCceEEEEEcCC------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203 406 GRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPG------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 406 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
++-...... .....+.+... + .+.+.|+.+ ..+..||..+..= ... ............+..
T Consensus 368 ~~W~~~~~lp~~r~~~~~~~~~-~---~iYv~GG~~~~~~~~~~v~~yd~~t~~W--~~~---~~~p~~r~~~~~~~~-- 436 (534)
T PHA03098 368 SKWREEPPLIFPRYNPCVVNVN-N---LIYVIGGISKNDELLKTVECFSLNTNKW--SKG---SPLPISHYGGCAIYH-- 436 (534)
T ss_pred CceeeCCCcCcCCccceEEEEC-C---EEEEECCcCCCCcccceEEEEeCCCCee--eec---CCCCccccCceEEEE--
Confidence 553222111 11111122111 2 455556532 4588899875431 110 011111111122222
Q ss_pred CCCEEEEEeCCC--------cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC-----CcEEEEe
Q 009203 478 DGLYITSGSADP--------VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-----LNIGLHK 539 (540)
Q Consensus 478 ~g~~l~sg~~dg--------~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-----g~v~iw~ 539 (540)
++.+++.|+.++ .+.+||..+.....+..+.........+.+ ++++++.||.+ ..|.+||
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 509 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYD 509 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEe
Confidence 566777776432 388888886433333333211111122222 67777777754 3566665
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.10 E-value=0.72 Score=47.78 Aligned_cols=110 Identities=8% Similarity=0.016 Sum_probs=71.0
Q ss_pred eEEEEEcCCCeEEEEECCCCcce-----------eeeecccc-ccCccccCeEEEEEc--CCCCEEEEEeCCCcEEEEec
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTE-----------IHAFGWKQ-ESSESQSALINQSWS--PDGLYITSGSADPVIHLFDI 496 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~-----------~~~~~~~~-~~~~~~~~v~~~~~s--p~g~~l~sg~~dg~i~iwd~ 496 (540)
.+|+.+..||.|.+|.+.+--.. ........ -...-...+++++++ ...++||+++....|.||-+
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 58899999999999977421000 00000000 001123478999998 78889999999999999877
Q ss_pred cCCCCc-ccccccccccceeEEEEcCCC-----C-EEEEEEcCCcEEEEeC
Q 009203 497 RYSANK-PSQSIRAHQKRVFKAVWHYSH-----P-LLISISSDLNIGLHKI 540 (540)
Q Consensus 497 ~~~~~~-~~~~~~~h~~~i~~l~~s~~~-----~-~l~s~~~dg~v~iw~l 540 (540)
.....+ ....-..|...|.+|.|-++. . .|++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 652111 111112356679999997643 2 7888999999999875
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.09 E-value=4.7 Score=43.16 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=66.6
Q ss_pred CEEEEEecCCcEEEEecCCCCCccccceeecccC---CcceeEEEec----------------cCCCEEEEEeCCCeEEE
Q 009203 340 PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH---SSAVMGVAGM----------------QQKQIVLSAGADKRIIG 400 (540)
Q Consensus 340 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~l~~s----------------~~~~~l~~~~~dg~i~i 400 (540)
..++.++.++.|.-.|..+++.+|+...-..... ...+..+.+. .++..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 4566666677788888888877665433211000 0012223331 13457888999999999
Q ss_pred EECCCCCeeeeeccCccEE-------------EEeecCCCCCceEEEEEcC----------CCeEEEEECCCCcceee
Q 009203 401 FDAGVGRADFKHQIESKCM-------------SVLPNPCDFNLFMVQTGTP----------GRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 401 wd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~ 455 (540)
.|.++|+....+...+.+. .....|-=.. ..+++|+. +|.|+-||..+++..-.
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999999886654433221 1111121001 24555532 68899999999886544
No 417
>PRK10115 protease 2; Provisional
Probab=94.96 E-value=6.1 Score=42.07 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=65.1
Q ss_pred ceeEEEecCCCeEEEEeec-CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC------C
Q 009203 277 PEDIAWHPQGNSLFSAHTA-DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD------H 349 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g 349 (540)
+..+.|+|||++|+.+... |+....|++.|+.++. .....+.. .-..++|.+ +++.|+....+ .
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~~i~~------~~~~~~w~~-D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPELLDN------VEPSFVWAN-DSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCccccC------cceEEEEee-CCCEEEEEEecCCCCCCC
Confidence 4568899999988887433 3344568888998762 11122221 114699999 77666555432 3
Q ss_pred cEEEEecCCCCCccccceeecccCCccee-EEEeccCCCEEEEEeC---CCeEEEEEC
Q 009203 350 AVVLWSERDAEDSWKPKALHRNLHSSAVM-GVAGMQQKQIVLSAGA---DKRIIGFDA 403 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~~---dg~i~iwd~ 403 (540)
.|+.+++.++... -..+.. ....... .+..+.++++++..+. ++.+.+++.
T Consensus 200 ~v~~h~lgt~~~~--d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 200 QVWRHTIGTPASQ--DELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEEECCCChhH--CeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 5777888877310 112221 1112222 3333447777665444 346888885
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.93 E-value=2.4 Score=37.15 Aligned_cols=145 Identities=11% Similarity=0.058 Sum_probs=85.4
Q ss_pred CCceeEEEecCCCeEEEEeecCC------CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCE-EEEEec
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADS------GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC-FATGGS 347 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~ 347 (540)
...+.-..+|+|++++ |..+.. ..|.++.|-.... +..+.. .-+.-+.++|+. +... .++-+.
T Consensus 109 nR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i~~---~v~IsNgl~Wd~-d~K~fY~iDsl 178 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQ-----VELIWN---CVGISNGLAWDS-DAKKFYYIDSL 178 (310)
T ss_pred cccccCccCCCCceee-eeeccccccccccccEEEEeccCCC-----ceeeeh---hccCCccccccc-cCcEEEEEccC
Confidence 4456667789999844 322111 2355666655421 111111 123456789987 5444 456677
Q ss_pred CCcEEEEe--cCCCCCccccceeeccc----CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEE
Q 009203 348 DHAVVLWS--ERDAEDSWKPKALHRNL----HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMS 420 (540)
Q Consensus 348 dg~i~iwd--~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~ 420 (540)
+-.|.-|| ..++....+...+.... ..-..-.++...+|++.+++-..++|..+|..+|+.+...... ..+.+
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 77887777 56665422222221111 1112234455667899998889999999999999998876654 56777
Q ss_pred EeecCCCCC
Q 009203 421 VLPNPCDFN 429 (540)
Q Consensus 421 ~~~~~~~~~ 429 (540)
++|...+.+
T Consensus 259 ccFgGkn~d 267 (310)
T KOG4499|consen 259 CCFGGKNLD 267 (310)
T ss_pred EEecCCCcc
Confidence 888765433
No 419
>PHA03098 kelch-like protein; Provisional
Probab=94.91 E-value=2.9 Score=43.27 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=73.3
Q ss_pred CCCEEEEEecC-----CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC------CeEEEEECCCC
Q 009203 338 ENPCFATGGSD-----HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD------KRIIGFDAGVG 406 (540)
Q Consensus 338 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~ 406 (540)
++.+++.||.+ ..+..||..+.+. . ......+...-.+++. -++..++.|+.+ ..+..||+.++
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~--~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW--R--EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce--e--eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 66788888865 3477888877652 1 1110001111112222 256777777632 35888998865
Q ss_pred CeeeeeccC--ccEEEEeecCCCCCceEEEEEcCC--------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 407 RADFKHQIE--SKCMSVLPNPCDFNLFMVQTGTPG--------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 407 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
+-....... ....+..... + .+++.|+.+ ..+.+||..+.+=. ... ...........+.+
T Consensus 417 ~W~~~~~~p~~r~~~~~~~~~-~---~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~--~~~---~~~~~r~~~~~~~~- 486 (534)
T PHA03098 417 KWSKGSPLPISHYGGCAIYHD-G---KIYVIGGISYIDNIKVYNIVESYNPVTNKWT--ELS---SLNFPRINASLCIF- 486 (534)
T ss_pred eeeecCCCCccccCceEEEEC-C---EEEEECCccCCCCCcccceEEEecCCCCcee--eCC---CCCcccccceEEEE-
Confidence 432221111 1111122211 1 355555432 23888888765411 110 01111111222333
Q ss_pred CCCCEEEEEeCC-----CcEEEEeccCCCCcccccc
Q 009203 477 PDGLYITSGSAD-----PVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 477 p~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~ 507 (540)
++.+++.|+.+ +.+.+||..+.....+..+
T Consensus 487 -~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 487 -NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred -CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCC
Confidence 67777777754 4688888886433333333
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.76 E-value=0.022 Score=58.51 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=52.4
Q ss_pred cCeEEEEEcC---CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEE-----------EcCCCCEEEEEEcCC
Q 009203 468 SALINQSWSP---DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV-----------WHYSHPLLISISSDL 533 (540)
Q Consensus 468 ~~v~~~~~sp---~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~-----------~s~~~~~l~s~~~dg 533 (540)
..+.-|.|.| +.-++..+-.++.|++.+.+. .....+.+|..++.+++ .+|||..|+.++.||
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r---a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR---ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeech---HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 3445556655 567888888899999888874 23355556877666654 589999999999999
Q ss_pred cEEEEeC
Q 009203 534 NIGLHKI 540 (540)
Q Consensus 534 ~v~iw~l 540 (540)
.+++|.+
T Consensus 258 ~v~f~Qi 264 (1283)
T KOG1916|consen 258 SVGFYQI 264 (1283)
T ss_pred ccceeee
Confidence 9999964
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.70 E-value=3.3 Score=37.81 Aligned_cols=153 Identities=8% Similarity=0.061 Sum_probs=90.9
Q ss_pred ceeEEEEeCCCCCEEEEEe---cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEE-C
Q 009203 328 IINSIIFLPWENPCFATGG---SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFD-A 403 (540)
Q Consensus 328 ~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd-~ 403 (540)
.+.+.++++ ++..++... ....++++...... .... ....+..-.|++++...+....+...+++. .
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~-----~~~~---~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPV-----RPVL---TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcc-----eeec---cCCccccccccCCCCEEEEEcCCCceEEEEec
Confidence 588999999 777766554 33445555544332 1211 223678889999988877777677777774 3
Q ss_pred CCCCe--eee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce--eeeeccccccCccccCeEEEEEcC
Q 009203 404 GVGRA--DFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE--IHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 404 ~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
..+.. ... ......+.++.++|++...-+++....++.|.+--+.....- ................++.++|.+
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 33332 222 111227899999999965444444455678887765422211 111111112223356789999999
Q ss_pred CCCEEEEEeCCC
Q 009203 478 DGLYITSGSADP 489 (540)
Q Consensus 478 ~g~~l~sg~~dg 489 (540)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998877765544
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=4.5 Score=41.72 Aligned_cols=201 Identities=11% Similarity=0.048 Sum_probs=94.9
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
-.|+||+.. | ..+..+-- . .+.+-.+.|+. ...|++-..+|++++|++-....... .+........|..
T Consensus 64 ~~I~If~~s-G---~lL~~~~w--~-~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~--svg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNIS-G---QLLGRILW--K-HGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESN--SVGFESQMSDIVE 132 (829)
T ss_pred eeEEEEecc-c---cchHHHHh--c-CCCeeeecccC--CceEEEEeccceEEEeecchhhhccc--ccccccccCceeE
Confidence 447777776 3 22222111 1 23688999985 45566678899999999976442110 0111223334555
Q ss_pred EEeccCCCEEEEEeCCCeEEEE-ECCCCCeeee---eccCccEEEEeecCCCCCceEEE-EEcCCCeEEEEECCCCccee
Q 009203 380 VAGMQQKQIVLSAGADKRIIGF-DAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQ-TGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iw-d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~ 454 (540)
+.|..+|-.+++ .+|.+.+- +......... ........++...+.+.....++ ..-..+ ..++-........
T Consensus 133 c~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 133 CRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL 209 (829)
T ss_pred EEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence 555545544333 34444443 3322111100 01111112332222221111111 110000 0111111111111
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc--ccccceeEEEEcCCC
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR--AHQKRVFKAVWHYSH 523 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~i~~l~~s~~~ 523 (540)
.. +..-.+.+..+..||++++|+.-..+|.|.+-+++. .+.+..+. .|. +.-.++|.-+.
T Consensus 210 ~~------~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~--~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 210 HA------LSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL--SQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred cc------cCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch--hhhhhccCCCCCC-chHhceeecCC
Confidence 11 111134678899999999999999999999998886 34444443 232 22356665443
No 423
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.55 E-value=3.5 Score=37.33 Aligned_cols=188 Identities=8% Similarity=-0.008 Sum_probs=102.9
Q ss_pred cceeEEEEeCCCCCEEEEEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203 327 GIINSIIFLPWENPCFATGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG 404 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~ 404 (540)
....++.|.. ++.++-+.+.-| .|+.+|+.+++.. ..... ...---..++.. ++......=.++...+||..
T Consensus 45 aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~---~~~~l-~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 45 AFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVL---QSVPL-PPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp -EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEE---EEEE--TTT--EEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred ccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEE---EEEEC-CccccceeEEEE-CCEEEEEEecCCeEEEEccc
Confidence 4466788865 777877777666 6999999998742 11111 111122334443 23444455568899999999
Q ss_pred CCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203 405 VGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS 484 (540)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 484 (540)
+.+.+..+........++.+.. .|+.......++++|..+.+.... +... ....--..++-+.|- +|...|=
T Consensus 119 tl~~~~~~~y~~EGWGLt~dg~-----~Li~SDGS~~L~~~dP~~f~~~~~-i~V~-~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 119 TLKKIGTFPYPGEGWGLTSDGK-----RLIMSDGSSRLYFLDPETFKEVRT-IQVT-DNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp TTEEEEEEE-SSS--EEEECSS-----CEEEE-SSSEEEEE-TTT-SEEEE-EE-E-ETTEE---EEEEEEE-TTEEEEE
T ss_pred cceEEEEEecCCcceEEEcCCC-----EEEEECCccceEEECCcccceEEE-EEEE-ECCEECCCcEeEEEE-cCEEEEE
Confidence 9888777766666666664432 455555567899999887654322 1111 000111234445554 5655555
Q ss_pred EeCCCcEEEEeccCCCCccccccc---------------ccccceeEEEEcCCCCEEEEEE
Q 009203 485 GSADPVIHLFDIRYSANKPSQSIR---------------AHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 485 g~~dg~i~iwd~~~~~~~~~~~~~---------------~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
.-....|...|..+ +..+..+. ...+-.+.|||.|..+.|...|
T Consensus 191 VW~td~I~~Idp~t--G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 191 VWQTDRIVRIDPET--GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTSSEEEEEETTT---BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEeCCC--CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555666666666 44333221 1134679999998876555444
No 424
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.53 E-value=4.1 Score=38.08 Aligned_cols=282 Identities=11% Similarity=0.103 Sum_probs=127.3
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...+.+|.|.. ..+-+++|. .+. |+...++....+....... ..-.-...++.|..+ ..++++ ..+ +
T Consensus 16 ~~~l~dV~F~d-~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~--~~~~~~l~~I~f~~~-~g~ivG-----~~g-~ 82 (302)
T PF14870_consen 16 DKPLLDVAFVD-PNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLD--NPFDYHLNSISFDGN-EGWIVG-----EPG-L 82 (302)
T ss_dssp SS-EEEEEESS-SS-EEEEET-TTE--EEEESSTTSS-EE-----S-------EEEEEEEETT-EEEEEE-----ETT-E
T ss_pred CCceEEEEEec-CCEEEEEec-CCE--EEEECCCCccccccccCCC--ccceeeEEEEEecCC-ceEEEc-----CCc-e
Confidence 35789999984 355566654 453 4445444433332211100 000122567777643 344444 444 4
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
.+...+.+..-..+..-.. -.+....+.... ++..++ ++..|. ||....+...|+... ..-.+.+..+..
T Consensus 83 ll~T~DgG~tW~~v~l~~~---lpgs~~~i~~l~-~~~~~l-~~~~G~--iy~T~DgG~tW~~~~---~~~~gs~~~~~r 152 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSK---LPGSPFGITALG-DGSAEL-AGDRGA--IYRTTDGGKTWQAVV---SETSGSINDITR 152 (302)
T ss_dssp EEEESSTTSS-EE----TT----SS-EEEEEEEE-TTEEEE-EETT----EEEESSTTSSEEEEE----S----EEEEEE
T ss_pred EEEecCCCCCcEEeecCCC---CCCCeeEEEEcC-CCcEEE-EcCCCc--EEEeCCCCCCeeEcc---cCCcceeEeEEE
Confidence 4444444433233322111 122344444443 343333 444454 444544444443322 234467888999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCC-eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGR-ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ 461 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 461 (540)
+++|.+++++.....+.-||.-... ..+.......+.++.|.|++ .+.+ ....|.|++=+.......... . ..
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~---~lw~-~~~Gg~~~~s~~~~~~~~w~~-~-~~ 226 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG---NLWM-LARGGQIQFSDDPDDGETWSE-P-II 226 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS----EEE-EETTTEEEEEE-TTEEEEE-----B-
T ss_pred CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC---CEEE-EeCCcEEEEccCCCCcccccc-c-cC
Confidence 9999999888776667778865322 22333445778899999986 2333 347888888772211111100 0 00
Q ss_pred ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
........+..++|.+++...++|+ .|.+ +...+. ++.-.... .-...++.|.|.++.+-+|. +.+|.|.-|
T Consensus 227 ~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~Dg--GktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 227 PIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDG--GKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESST--TSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCC--CccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 1112334589999999888777665 4544 334443 33333222 22345788888766554444 578887665
No 425
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.47 E-value=5.3 Score=39.11 Aligned_cols=148 Identities=6% Similarity=-0.013 Sum_probs=79.2
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCC-eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc---
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGR-ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT--- 452 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--- 452 (540)
...+..+++|.+++.+.....++-||--... ..........+.++.+.+++ .+++++ .+|.+.. ....+..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg---~l~l~g-~~G~l~~-S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADG---GLWLLT-RGGGLYV-SKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCC---CEEEEe-CCceEEE-ecCCCCcccc
Confidence 4455667787777766554333444432211 12233344556778787766 344444 4555433 2222221
Q ss_pred -eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEcCCCCEEEE
Q 009203 453 -EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWHYSHPLLIS 528 (540)
Q Consensus 453 -~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s~~~~~l~s 528 (540)
..... ........++++.|.+++..+++| ..|.+....-. ++...... .-....+.+.|.++++.+++
T Consensus 316 ~~f~~~----~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~---G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 316 FDFEEA----DIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDG---GKSWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred cceeec----ccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCC---CcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 11110 001122358899999888776666 67866665433 33322222 22346789999877766655
Q ss_pred EEcCCcEEEE
Q 009203 529 ISSDLNIGLH 538 (540)
Q Consensus 529 ~~~dg~v~iw 538 (540)
+.+|.|.-|
T Consensus 388 -G~~G~il~~ 396 (398)
T PLN00033 388 -GNDGVLLRY 396 (398)
T ss_pred -eCCcEEEEe
Confidence 468887665
No 426
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.33 E-value=0.0094 Score=56.98 Aligned_cols=148 Identities=13% Similarity=0.081 Sum_probs=103.6
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
+........|-+.+.-++.++.+..+..||-. ++..........+..++|+-.++ ..++.+-..+.+.+||+.+...
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegd--vlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGD--VLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccc--hhhhhhhcCCCeeechhhhhhH
Confidence 33444556777877778888888888899865 55556666677788888887543 3566667788999999986543
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
....+ +....-.-+.|++.+..++.|...|.+.|++..+ .+.......|..++++++|.+.+. .+.++.|
T Consensus 110 qqLE~-------gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt--sR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd 179 (615)
T KOG2247|consen 110 QQLES-------GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT--SRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD 179 (615)
T ss_pred HHHhc-------cCcchHHHHhhccCCccccccccccceEEEeccc--hhhhhhhcccccceeEEEecccce-eeecCcH
Confidence 22111 1111112268999999999999999999999987 444445555999999999998764 4444444
Q ss_pred C
Q 009203 533 L 533 (540)
Q Consensus 533 g 533 (540)
.
T Consensus 180 ~ 180 (615)
T KOG2247|consen 180 N 180 (615)
T ss_pred H
Confidence 3
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=0.75 Score=49.27 Aligned_cols=135 Identities=10% Similarity=0.074 Sum_probs=85.1
Q ss_pred ccccccceEEecCCCCeEEEeccchh----------cc------cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC
Q 009203 193 EHRELIPLVRTSASPATIHCHTSNHV----------SS------LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR 256 (540)
Q Consensus 193 ~~~~~v~~~~~~~~d~~i~~~~~~~~----------~~------~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~ 256 (540)
-|+.-+..+.+.+++..|..||...+ |. ..-.-..++.|+|.-....|.+..|+.|++..+...
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 34444455666666777777766411 22 222456788899854445677888999988876543
Q ss_pred CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc-ccceeEEEEe
Q 009203 257 GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV-KGIINSIIFL 335 (540)
Q Consensus 257 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 335 (540)
....+- ..-...+++++|+|.|+.++.| ..+|++.-|...- .....+...+.. ...|.+|+|.
T Consensus 189 ~~~v~s--------~p~t~~~Tav~WSprGKQl~iG----~nnGt~vQy~P~l----eik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 189 AQNVTS--------FPVTNSQTAVLWSPRGKQLFIG----RNNGTEVQYEPSL----EIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhcc--------cCcccceeeEEeccccceeeEe----cCCCeEEEeeccc----ceeecccCCCcCCCcceeEEEEe
Confidence 211111 1233557899999999999999 9999999887652 222233322222 3679999998
Q ss_pred CCCCCEEEE
Q 009203 336 PWENPCFAT 344 (540)
Q Consensus 336 p~~~~~l~s 344 (540)
. ...++++
T Consensus 253 ~-t~eflvv 260 (1405)
T KOG3630|consen 253 S-TQEFLVV 260 (1405)
T ss_pred c-ceeEEEE
Confidence 7 5555554
No 428
>PRK04406 hypothetical protein; Provisional
Probab=94.29 E-value=0.35 Score=34.21 Aligned_cols=52 Identities=10% Similarity=0.213 Sum_probs=45.4
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
..+..++.|.-.+.+.++-++.|...+...++++..+++++..+..++....
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567889999999999999999999999999999999999888888776654
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.23 E-value=0.18 Score=30.94 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=27.1
Q ss_pred ceeEEEEeCCCC--CEEEEEecCCcEEEEecCCC
Q 009203 328 IINSIIFLPWEN--PCFATGGSDHAVVLWSERDA 359 (540)
Q Consensus 328 ~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~ 359 (540)
.|.++.|+|..+ ++|+.+-.-|.|.|+|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 588999998555 68888888899999999953
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.19 E-value=1.1 Score=45.94 Aligned_cols=119 Identities=14% Similarity=0.206 Sum_probs=71.6
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe--cCCCeEEEEeecCCCCCeE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH--PQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~--~~~~~l~s~~~~~~~d~~i 302 (540)
..+-+.-+. -++..++-+....+.|||...+...... .+ ...+.|.++.|. |+|+.+++. +..+.|
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~--~f-----~~~~~I~dLDWtst~d~qsiLaV----Gf~~~v 98 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEE--SF-----SEDDPIRDLDWTSTPDGQSILAV----GFPHHV 98 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEee--ee-----cCCCceeeceeeecCCCCEEEEE----EcCcEE
Confidence 344444444 2444444444567999999876632222 11 345779999995 578877777 788889
Q ss_pred EEEecC------CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC
Q 009203 303 SVLNLN------KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD 358 (540)
Q Consensus 303 ~vwd~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 358 (540)
.++--. .+.....+..+....+...+|.+..|.+ +|.+++.++ ..+.|+|-.-
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk~~ 157 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDKWL 157 (631)
T ss_pred EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECCCc
Confidence 888432 1111223333333223345789999998 886665543 5688876543
No 431
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.15 E-value=0.57 Score=32.88 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=46.1
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRC 76 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 76 (540)
..+...+.|...+.+.++-++.|...+...++++..+++++..+..++.....
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35678889999999999999999999999999999999998888888877654
No 432
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.09 E-value=5.1 Score=37.46 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=77.2
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
...+..+.-+++|.+++++ .....+.-||.... ........ ....|..|.|.| ++.+.+.+ ..|.|+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs----~~G~~~~s~~~G~~--~w~~~~r~----~~~riq~~gf~~-~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVS----SRGNFYSSWDPGQT--TWQPHNRN----SSRRIQSMGFSP-DGNLWMLA-RGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEE----TTSSEEEEE-TT-S--S-EEEE------SSS-EEEEEE-T-TS-EEEEE-TTTEEEE
T ss_pred cceeEeEEECCCCcEEEEE----CcccEEEEecCCCc--cceEEccC----ccceehhceecC-CCCEEEEe-CCcEEEE
Confidence 3568888889999999997 66666677876532 11122211 246799999999 77766654 7788888
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee----ccCccEEEEeecCCCCC
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH----QIESKCMSVLPNPCDFN 429 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 429 (540)
=+.......|...........-.+.+++|.+++...++|+. |.+ +.....|+.-... ........+.|.+.+
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-- 287 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-- 287 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT--
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCC--
Confidence 77222221221211211123344889999988777765554 433 4555666653332 234566777776544
Q ss_pred ceEEEEEcCCCeEEEE
Q 009203 430 LFMVQTGTPGRQLRLY 445 (540)
Q Consensus 430 ~~~l~~~~~dg~v~i~ 445 (540)
.-++. +.+|.|.-|
T Consensus 288 -~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 288 -KGFVL-GQDGVLLRY 301 (302)
T ss_dssp -EEEEE--STTEEEEE
T ss_pred -ceEEE-CCCcEEEEe
Confidence 33444 456666544
No 433
>PHA02790 Kelch-like protein; Provisional
Probab=94.02 E-value=2.6 Score=42.78 Aligned_cols=180 Identities=6% Similarity=-0.102 Sum_probs=84.5
Q ss_pred CCCEEEEEecCC-----cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC--CeEEEEECCCCCeee
Q 009203 338 ENPCFATGGSDH-----AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD--KRIIGFDAGVGRADF 410 (540)
Q Consensus 338 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~ 410 (540)
++.+++.||.++ .+..||..+... ..+........-.+++ .-+|...+.|+.+ ..+..||..+++-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W----~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNW----IPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEE----EECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 445566666542 466788776542 1111000111111222 2356777777753 357888887654322
Q ss_pred eeccCc---cEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203 411 KHQIES---KCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS 484 (540)
Q Consensus 411 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 484 (540)
...... ....+.... .+.+.|+.+ ..+..||..+.. .... ............+++ +|.+.+.
T Consensus 346 ~~~l~~~r~~~~~~~~~g-----~IYviGG~~~~~~~ve~ydp~~~~--W~~~---~~m~~~r~~~~~~~~--~~~IYv~ 413 (480)
T PHA02790 346 MPSLLKPRCNPAVASINN-----VIYVIGGHSETDTTTEYLLPNHDQ--WQFG---PSTYYPHYKSCALVF--GRRLFLV 413 (480)
T ss_pred CCCCCCCCcccEEEEECC-----EEEEecCcCCCCccEEEEeCCCCE--EEeC---CCCCCccccceEEEE--CCEEEEE
Confidence 211111 111222221 456666644 346778876543 1110 011111111222233 6667777
Q ss_pred EeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC-----CcEEEEe
Q 009203 485 GSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-----LNIGLHK 539 (540)
Q Consensus 485 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-----g~v~iw~ 539 (540)
|+ .+.+||..+.....+..+.........+.+ +|++.+.||.+ ..|..||
T Consensus 414 GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 414 GR---NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CC---ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEE
Confidence 64 577898886444444444322222222333 77788888765 3455655
No 434
>PRK00736 hypothetical protein; Provisional
Probab=93.90 E-value=0.84 Score=31.62 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
.++..+.|...+.+.++-++.|...+..-++++..+++++..+..++....
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788888999999999999999999999999999999888888876654
No 435
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.88 E-value=7.1 Score=38.36 Aligned_cols=153 Identities=8% Similarity=-0.009 Sum_probs=81.0
Q ss_pred CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe---CCCC-CEEEEEecCCcEEEEecCCCCC
Q 009203 286 GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL---PWEN-PCFATGGSDHAVVLWSERDAED 361 (540)
Q Consensus 286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~-~~l~s~~~dg~i~iwd~~~~~~ 361 (540)
...|++| +..|.++||+.........-..++. .-..+|..+..- +... ..||. -.-..+.||.+.....
T Consensus 37 ~d~IivG----S~~G~LrIy~P~~~~~~~~~lllE~--~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 37 SDKIIVG----SYSGILRIYDPSGNEFQPEDLLLET--QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDG 109 (418)
T ss_pred ccEEEEe----ccccEEEEEccCCCCCCCccEEEEE--ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCC
Confidence 4589999 9999999999865432111111111 124567777653 2122 33444 3446788888733221
Q ss_pred c------cccceeecccCCcceeEEEecc----C-CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203 362 S------WKPKALHRNLHSSAVMGVAGMQ----Q-KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 362 ~------~~~~~~~~~~~~~~v~~l~~s~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (540)
. +....+....-......+++-| . ..+|.+-+.||.+.+|+-+.-........---.-.+.+.+..
T Consensus 110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~t--- 186 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRT--- 186 (418)
T ss_pred CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecC---
Confidence 0 1122221111122333444433 2 367888899999999998754322222211111233344433
Q ss_pred eEEEEEcCCCeEEEEECC
Q 009203 431 FMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~ 448 (540)
..+++++.+..+..|...
T Consensus 187 Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CEEEEecCceeEEEecHH
Confidence 367788888888888764
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.88 E-value=10 Score=40.25 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=52.9
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEEEecCC----------CCCcccccee------ecccCCcceeEEEeccC---CC
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERD----------AEDSWKPKAL------HRNLHSSAVMGVAGMQQ---KQ 387 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~------~~~~~~~~v~~l~~s~~---~~ 387 (540)
-.|..|.++| +|.+++..|..| |.|..+.. +...-..+.+ ....+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4588999999 999998888755 44444421 1110011111 11234568899999986 58
Q ss_pred EEEEEeCCCeEEEEECCCC
Q 009203 388 IVLSAGADKRIIGFDAGVG 406 (540)
Q Consensus 388 ~l~~~~~dg~i~iwd~~~~ 406 (540)
.|++-+.|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999753
No 437
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.69 E-value=8.2 Score=38.39 Aligned_cols=112 Identities=10% Similarity=0.066 Sum_probs=61.3
Q ss_pred cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--ee------eccCccEEEEeecCCC---CCceEEEEEc------
Q 009203 375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD--FK------HQIESKCMSVLPNPCD---FNLFMVQTGT------ 437 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~------~~~~~~~~~~~~~~~~---~~~~~l~~~~------ 437 (540)
...+.|+|.|||++|++--..|.|++++..++... .. .......+.++++|+- ....+|....
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 45788999999988776655799999987654321 11 1135667899999873 2212333321
Q ss_pred ----CCCeEEEEECCCCc--c--eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203 438 ----PGRQLRLYDIRLRQ--T--EIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD 488 (540)
Q Consensus 438 ----~dg~v~i~d~~~~~--~--~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d 488 (540)
....|.-|.+.... . ....+.-......|. -..|.|.|||.++++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 12345556554211 0 111111000111233 4578899999877655443
No 438
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.51 E-value=3.1 Score=33.05 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=67.8
Q ss_pred EEeCCCCCEEEEEecCCcEEEEecCCCCCcc--ccceeecccCCcceeEEEecc-----CCCEEEEEeCCCeEEEEECCC
Q 009203 333 IFLPWENPCFATGGSDHAVVLWSERDAEDSW--KPKALHRNLHSSAVMGVAGMQ-----QKQIVLSAGADKRIIGFDAGV 405 (540)
Q Consensus 333 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~l~~s~-----~~~~l~~~~~dg~i~iwd~~~ 405 (540)
.|.. ....|+.++.-|.|.|++........ .-..+....-...|++++-.+ +...|+.|+. ..+..||+.+
T Consensus 5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 4544 44467778888999999876543211 001111122456677776543 3456776665 4799999998
Q ss_pred CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 406 GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
..-++.......+.++.+-..+....-++..+.+..|.-||....+
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 8887776666666666653222111223333445667667665433
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.46 E-value=3.6 Score=42.92 Aligned_cols=157 Identities=17% Similarity=0.106 Sum_probs=90.0
Q ss_pred CCeEEEEeecCCCCCeEEEEecCCCCCcee---EEeecCCC-------------CcccceeEEEEeCC-CCCEEEEEecC
Q 009203 286 GNSLFSAHTADSGDSQISVLNLNKTKGRAC---VTFLDDKP-------------HVKGIINSIIFLPW-ENPCFATGGSD 348 (540)
Q Consensus 286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~-------------~~~~~v~~~~~~p~-~~~~l~s~~~d 348 (540)
.++|+.+ ..+.|.||+.+....... ...+...+ ...-.|+.|..... +...|+.|..|
T Consensus 49 ~n~LFiA-----~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~Dd 123 (717)
T PF08728_consen 49 RNLLFIA-----YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDD 123 (717)
T ss_pred CCEEEEE-----ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecC
Confidence 6677775 588899999865322110 00010000 01112444443321 45678889999
Q ss_pred CcEEEEecCC-------C----CC---ccccceeecccCCcceeEEEec--cCCCEEEEEeCCCeEEEEECCCC--Cee-
Q 009203 349 HAVVLWSERD-------A----ED---SWKPKALHRNLHSSAVMGVAGM--QQKQIVLSAGADKRIIGFDAGVG--RAD- 409 (540)
Q Consensus 349 g~i~iwd~~~-------~----~~---~~~~~~~~~~~~~~~v~~l~~s--~~~~~l~~~~~dg~i~iwd~~~~--~~~- 409 (540)
|.|.+|.+.. . .. ...............+++++++ ...++||+++....|.||-.... +..
T Consensus 124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~ 203 (717)
T PF08728_consen 124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH 203 (717)
T ss_pred CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence 9999996621 0 00 0001111112245678999998 77888888888888888765442 111
Q ss_pred -eeeccCccEEEEeecCCC--CCc-eEEEEEcCCCeEEEEEC
Q 009203 410 -FKHQIESKCMSVLPNPCD--FNL-FMVQTGTPGRQLRLYDI 447 (540)
Q Consensus 410 -~~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~dg~v~i~d~ 447 (540)
..+.....+-++.|.++. ..+ ..+++++-.|.+.+|++
T Consensus 204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 123344555566665544 333 37888899999999888
No 440
>PRK02119 hypothetical protein; Provisional
Probab=93.44 E-value=0.73 Score=32.45 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
.++..+.|.-.+.+.++-++.|...+..-++++..+++++..+..++....
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457888888999999999999999999999999999999888888876654
No 441
>PRK00295 hypothetical protein; Provisional
Probab=93.27 E-value=1.2 Score=30.79 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
.++..+.|.-.+.+.++-++.|...+..-++++..+++++..+..++....
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346688888889999999999999999999999999988888887777654
No 442
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.22 E-value=0.87 Score=40.43 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=49.7
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeeeeccccccC-------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESS-------ESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.++++-+.+|.+++||+.+.+...........+. .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4788889999999999998876554422222222 3556789999999998887765 58899999884
No 443
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.98 E-value=0.39 Score=33.47 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
.++..+.|...+.+.++.++.|...+...+.++..+++++..+..++..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788899999999999999999999999999999999888888887765
No 444
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=2.8 Score=36.01 Aligned_cols=103 Identities=7% Similarity=0.016 Sum_probs=59.4
Q ss_pred CCCEEEEEec--CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE-EEEeCCCeEEEEECCCCCeeeeecc
Q 009203 338 ENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV-LSAGADKRIIGFDAGVGRADFKHQI 414 (540)
Q Consensus 338 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 414 (540)
++.++.+.+. ...|++||+.+++..+....-........++. -|..+ ...=.+|.-..+|.++.+++-.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 5566666553 34699999998875332221100011111221 12333 3334578889999999888877777
Q ss_pred CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 415 ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
++....++.+.. -|..++...+++.-|..+.
T Consensus 130 ~GeGWgLt~d~~-----~LimsdGsatL~frdP~tf 160 (262)
T COG3823 130 EGEGWGLTSDDK-----NLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred CCcceeeecCCc-----ceEeeCCceEEEecCHHHh
Confidence 777777766554 3555555556766666543
No 445
>PRK04325 hypothetical protein; Provisional
Probab=92.39 E-value=1.5 Score=31.05 Aligned_cols=53 Identities=8% Similarity=0.120 Sum_probs=45.6
Q ss_pred CChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 23 NSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 23 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
+..++.++.|...+.+.++-++.|...+...++++..+++++..+..++....
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567888999999999999999999999999999999999888888776654
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.20 E-value=18 Score=38.49 Aligned_cols=84 Identities=17% Similarity=0.069 Sum_probs=58.9
Q ss_pred CcceeEEEeccCCCEEEEEeCCCeEEEEECCC---------CCe-e-----------eeeccCccEEEEeecCCCCCceE
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV---------GRA-D-----------FKHQIESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~ 432 (540)
.-.|..+.++|+|.+++..|..|.+.+.=.+. |+. + +.......+..+.|+|.+.++..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 34688999999999999998876544433221 111 1 11123457788999999876678
Q ss_pred EEEEcCCCeEEEEECCCCcceeeee
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
|++-..|+++++||+.....+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 9999999999999998765444443
No 447
>PRK00846 hypothetical protein; Provisional
Probab=92.03 E-value=1.9 Score=30.54 Aligned_cols=54 Identities=7% Similarity=0.129 Sum_probs=45.3
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhccC
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQ 77 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 77 (540)
..+...+.|...+...+.-++.|...+...+..+..++.++..+..+|......
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345788888888999999999999999999999999999888888888776543
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.93 E-value=2 Score=41.97 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=86.7
Q ss_pred ccCCCEEEE-EeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc----eEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 383 MQQKQIVLS-AGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL----FMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 383 s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
..+..+|+. |.....++-.|+..|+.+-.......+ -+.++|..... ..-++|-.+..|.-.|.+-....+...
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 334555554 444556888888888887776666555 55666643111 122345556677667766544322211
Q ss_pred ccccccCccccCeEEEEEcC----CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203 458 GWKQESSESQSALINQSWSP----DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 458 ~~~~~~~~~~~~v~~~~~sp----~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
. ....++.-.||. ...|+|+|+..|.|++||.-. .+.-..+++-...|-.+..+.+|+++++.|..
T Consensus 555 e-------sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig--~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 E-------SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG--KRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred e-------ehhccccccccccccccCceEEEecCCCceeeehhhc--chhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 1 111222223332 345999999999999999774 34444566777789999999999988777654
No 449
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.75 E-value=0.41 Score=49.80 Aligned_cols=188 Identities=12% Similarity=0.030 Sum_probs=98.5
Q ss_pred CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCc----eeEEe
Q 009203 244 LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGR----ACVTF 318 (540)
Q Consensus 244 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~----~~~~~ 318 (540)
..+.|++-+....-....+. .|..+.|-.+.|-.. ...+. ..-|.+.|||++--++. ..++.
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~-------kgf~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~~ 175 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELA-------KGFPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVTP 175 (1283)
T ss_pred hhhhhhhccCcchhHHHHHH-------hcCCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEee
Confidence 34556776665433211222 355666777877331 11111 12345788887642221 11222
Q ss_pred ecCCCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE-----------eccC
Q 009203 319 LDDKPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA-----------GMQQ 385 (540)
Q Consensus 319 ~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~-----------~s~~ 385 (540)
... ....+.-+.|.|. +.-++..+-.++.|++..+.+... ..+ .+|...+..++ .+||
T Consensus 176 ~~p---~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~--rsHs~~~~d~a~~~~g~~~l~~lSpD 246 (1283)
T KOG1916|consen 176 ITP---YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLF--RSHSQRVTDMAFFAEGVLKLASLSPD 246 (1283)
T ss_pred cCc---CCCCcceeeecccccccceeeeccCCCceeEeeechHHH----HHH--HhcCCCcccHHHHhhchhhheeeCCC
Confidence 221 1233445555542 445666777888999887776541 222 22666665544 4889
Q ss_pred CCEEEEEeCCCeEEEEECCC-CC----eeeeecc-C-ccEEEEeecCC-------CCCceEEEEE-cCCCeEEEEECCCC
Q 009203 386 KQIVLSAGADKRIIGFDAGV-GR----ADFKHQI-E-SKCMSVLPNPC-------DFNLFMVQTG-TPGRQLRLYDIRLR 450 (540)
Q Consensus 386 ~~~l~~~~~dg~i~iwd~~~-~~----~~~~~~~-~-~~~~~~~~~~~-------~~~~~~l~~~-~~dg~v~i~d~~~~ 450 (540)
|..++.++.||.++.|.+.- |+ ++..... . ....|+.++.. +.. .+++++ ..+..+++|.....
T Consensus 247 Gtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w-~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 247 GTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW-VLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred CcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcccee-EEEEecccCCcceeEeeccch
Confidence 99999999999988887642 22 2222111 1 22223223221 111 334444 34556999998877
Q ss_pred ccee
Q 009203 451 QTEI 454 (540)
Q Consensus 451 ~~~~ 454 (540)
+|.+
T Consensus 326 ~Cll 329 (1283)
T KOG1916|consen 326 QCLL 329 (1283)
T ss_pred hhhh
Confidence 7653
No 450
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=3.8 Score=39.59 Aligned_cols=138 Identities=11% Similarity=0.087 Sum_probs=77.1
Q ss_pred eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203 278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER 357 (540)
Q Consensus 278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 357 (540)
+.+-|...++.|++. ..|.+.-|-+........+. +.. ...++|.++.|++ |.+.|+.--.|.+|.+++..
T Consensus 26 ngvFfDDaNkqlfav-----rSggatgvvvkgpndDVpiS-fdm--~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-----RSGGATGVVVKGPNDDVPIS-FDM--DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFI 96 (657)
T ss_pred cceeeccCcceEEEE-----ecCCeeEEEEeCCCCCCCce-eee--cCCCceeEEEecc-CcceEEEEecCceEEEEecC
Confidence 345555445555543 45555666555332222222 221 2357899999999 99999999999999999985
Q ss_pred CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEEC--CCCCeeeeeccCccEEEEeecCCC
Q 009203 358 DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA--GVGRADFKHQIESKCMSVLPNPCD 427 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~ 427 (540)
..+... .........+..|.++.|+.+ .-++..+..| +-+|-. ..............+.-..|.++.
T Consensus 97 ~d~~~l-~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 97 PDNSQL-EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred CCchhh-HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcccc
Confidence 443210 111122334556899999865 5556555554 444433 222222223334445555555544
No 451
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.61 E-value=6.9 Score=40.32 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=28.2
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG 257 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~ 257 (540)
.-++++.-+| +++-++.+..||+|++|+.....
T Consensus 15 e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecC-CCceEEEEecCCcEEEEeecccc
Confidence 4577888889 79999999999999999987654
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.55 E-value=1.1 Score=39.86 Aligned_cols=69 Identities=9% Similarity=0.154 Sum_probs=47.7
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCC------CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP------KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK 309 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~------~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~ 309 (540)
+.+|++-+.+|.+++||+.+.+.......-...... .....|..+.++.+|.-|++- .+|....|+.+-
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-----sng~~y~y~~~L 96 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-----SNGDSYSYSPDL 96 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-----eCCCEEEecccc
Confidence 677888899999999999988764433111111111 345668888888888877765 457788888764
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.45 E-value=13 Score=35.41 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=83.3
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCe------EEEEECCC--CC--eee------eeccCc--------cEEEEeecCCCC
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKR------IIGFDAGV--GR--ADF------KHQIES--------KCMSVLPNPCDF 428 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~------i~iwd~~~--~~--~~~------~~~~~~--------~~~~~~~~~~~~ 428 (540)
.-+.+..|.+.+++..+++.+.+|. +..+++.. +. .+. .....+ ..-++++.+++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g- 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG- 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-
Confidence 3456788888876667777777777 66666543 10 000 011111 22245554444
Q ss_pred CceEEEEEcCC------CeEEEEECCCCcceeeeecccc---------ccCccccCeEEEEEcCCCCEEEEEeC-----C
Q 009203 429 NLFMVQTGTPG------RQLRLYDIRLRQTEIHAFGWKQ---------ESSESQSALINQSWSPDGLYITSGSA-----D 488 (540)
Q Consensus 429 ~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~sp~g~~l~sg~~-----d 488 (540)
.++++.-.+ ..|..++.. +.. ...+.... .........-+++++|+|+.|+++.+ |
T Consensus 97 --~~~is~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 97 --SFWISSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQD 172 (326)
T ss_pred --CEEEEeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCC
Confidence 456665556 678888876 332 22221111 11234567899999999996665532 2
Q ss_pred C--c-------EEEEeccCCC-Ccccccc----cc-----cccceeEEEEcCCCCEEEE
Q 009203 489 P--V-------IHLFDIRYSA-NKPSQSI----RA-----HQKRVFKAVWHYSHPLLIS 528 (540)
Q Consensus 489 g--~-------i~iwd~~~~~-~~~~~~~----~~-----h~~~i~~l~~s~~~~~l~s 528 (540)
+ . ++|+.++... +.+...+ .. ....|..+.+-+++++|+.
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 1 5666555321 2222222 11 3457899999999987765
No 454
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=8.7 Score=33.18 Aligned_cols=151 Identities=9% Similarity=0.020 Sum_probs=73.4
Q ss_pred CCcEEEEEeCC--ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC
Q 009203 235 NEQLFVTSALD--GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG 312 (540)
Q Consensus 235 ~~~~l~tg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~ 312 (540)
+|.++.+.+.- ..|++||+.+++.+........ .-....++.+ .|.-+.++ -.+|.-..+|.++-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~---~~FgEGit~~---gd~~y~LT-----w~egvaf~~d~~t~-- 121 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD---TVFGEGITKL---GDYFYQLT-----WKEGVAFKYDADTL-- 121 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCc---cccccceeec---cceEEEEE-----eccceeEEEChHHh--
Confidence 46666666543 4699999998876544432210 0111122221 12123333 47888888988874
Q ss_pred ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE
Q 009203 313 RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA 392 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 392 (540)
+++..+.- .+.=+.++- ++..|+.+....+++.-|..+-....+.........-..++.+.|- +|...+-.
T Consensus 122 -~~lg~~~y----~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANV 192 (262)
T COG3823 122 -EELGRFSY----EGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANV 192 (262)
T ss_pred -hhhccccc----CCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEee
Confidence 33333322 334566655 4444555554556777776664432222222211122234445554 45544443
Q ss_pred eCCCeEEEEECCCCC
Q 009203 393 GADKRIIGFDAGVGR 407 (540)
Q Consensus 393 ~~dg~i~iwd~~~~~ 407 (540)
=.+..|...|..+|+
T Consensus 193 w~t~~I~rI~p~sGr 207 (262)
T COG3823 193 WQTTRIARIDPDSGR 207 (262)
T ss_pred eeecceEEEcCCCCc
Confidence 333444444554444
No 455
>PLN02153 epithiospecifier protein
Probab=91.29 E-value=14 Score=35.47 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=15.7
Q ss_pred CCCEEEEEecC-----CcEEEEecCCCC
Q 009203 338 ENPCFATGGSD-----HAVVLWSERDAE 360 (540)
Q Consensus 338 ~~~~l~s~~~d-----g~i~iwd~~~~~ 360 (540)
++.+++.|+.+ ..+.+||+.+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 56677777753 247788887654
No 456
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=12 Score=34.27 Aligned_cols=196 Identities=13% Similarity=0.131 Sum_probs=116.3
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
-+..+.++. ++...+ ..+.-++|.|+.+......+..+.. .+.-.++.. .|++...+..|.-+-+.|
T Consensus 88 l~~Dv~vse--~yvyva----d~ssGL~IvDIS~P~sP~~~~~lnt----~gyaygv~v---sGn~aYVadlddgfLivd 154 (370)
T COG5276 88 LFADVRVSE--EYVYVA----DWSSGLRIVDISTPDSPTLIGFLNT----DGYAYGVYV---SGNYAYVADLDDGFLIVD 154 (370)
T ss_pred hhheeEecc--cEEEEE----cCCCceEEEeccCCCCcceeccccC----CceEEEEEe---cCCEEEEeeccCcEEEEE
Confidence 356677764 566666 7788899999998866555555543 244455555 678888888666678899
Q ss_pred cCCCCCccccceeec-ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-ee--eeccCccEEEEeecCCCCCce
Q 009203 356 ERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DF--KHQIESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~ 431 (540)
+.+... +...-+ ......-..++.| |++-+.+..|+-+.+.|+.+... .+ ....+....++..+++. .
T Consensus 155 vsdpss---P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr---~ 226 (370)
T COG5276 155 VSDPSS---PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR---A 226 (370)
T ss_pred CCCCCC---ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe---e
Confidence 988764 222221 1122333556665 78888888899999999987543 22 23334467777777753 2
Q ss_pred EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203 432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS 499 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~ 499 (540)
+++. .+..+.+-|..+...+.. ++... ......++.+.. .|++......+.-+-+-|+.++
T Consensus 227 y~vv--y~egvlivd~s~~ssp~~-~gsye--t~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 227 YLVV--YDEGVLIVDVSGPSSPTV-FGSYE--TSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEEE--cccceEEEecCCCCCceE-eeccc--cCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence 3333 344566777766553221 11110 011112232333 4666666666666777777764
No 457
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.14 E-value=11 Score=34.00 Aligned_cols=231 Identities=16% Similarity=0.154 Sum_probs=137.6
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV 304 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v 304 (540)
.-..|+-.|| |..-.++...+.|--.|-.+++...-.+ +.......|..-|||..-++- +.. .|.-
T Consensus 63 ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypL--------g~Ga~Phgiv~gpdg~~Witd----~~~-aI~R 128 (353)
T COG4257 63 APFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPL--------GSGASPHGIVVGPDGSAWITD----TGL-AIGR 128 (353)
T ss_pred CccccccCCC-CceEEecCccccceecCCCCCceEEEec--------CCCCCCceEEECCCCCeeEec----Ccc-eeEE
Confidence 3455666775 7777777777777666777666433222 222334567777888765553 222 4555
Q ss_pred EecCCCCCceeEEeecC-CCCcccceeEEEEeCCCCCEEEEEec---------CCcEEEEecCCCCCccccceeecccCC
Q 009203 305 LNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPWENPCFATGGS---------DHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
.|-++.. ++.+.. ..+..+......|.+ .|++-+++.. .+.|++|+.- ..
T Consensus 129 ~dpkt~e----vt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaP---------------qG 188 (353)
T COG4257 129 LDPKTLE----VTRFPLPLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAP---------------QG 188 (353)
T ss_pred ecCcccc----eEEeecccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeeccC---------------CC
Confidence 5555432 222211 112345578889999 8888888753 1234444433 23
Q ss_pred cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
...+.|+..|+|...++.-.+..|-..|...+........ ......+..+|.+ ..-++....+.+..||-.+..
T Consensus 189 ~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig---~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 189 GGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG---RAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred CCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccC---cEEEeccCCceeeEeCccccc
Confidence 4467889999999998887888888888877644222111 2223344445544 566676777788888876544
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
...+ .+.+......++..+..|+.-.+-...|.|.-||.++
T Consensus 266 --W~ey----pLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 266 --WIEY----PLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred --ceee----eCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 1111 2344445566777776776666555667777777775
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=90.97 E-value=20 Score=36.47 Aligned_cols=106 Identities=4% Similarity=-0.078 Sum_probs=50.8
Q ss_pred cCCCeEEEEeecCCCC--CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC---cEEEEecCC
Q 009203 284 PQGNSLFSAHTADSGD--SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH---AVVLWSERD 358 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~ 358 (540)
-+|...+.| +.+ ..+..||..++. . ......+........+.+ ++.+.+.||.++ .+..||..+
T Consensus 317 ~~~~iYviG----G~~~~~sve~ydp~~n~---W-~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 317 ANNKLYVVG----GLPNPTSVERWFHGDAA---W-VNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred ECCEEEEEC----CcCCCCceEEEECCCCe---E-EECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCC
Confidence 356666666 432 457788876541 1 111111111111222222 677888887653 477888877
Q ss_pred CCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe
Q 009203 359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA 408 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 408 (540)
..- .. .........-.+++ .-+|...+.| |.+.+||..+++-
T Consensus 386 ~~W--~~--~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~~~W 427 (480)
T PHA02790 386 DQW--QF--GPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESSNTW 427 (480)
T ss_pred CEE--Ee--CCCCCCccccceEE-EECCEEEEEC---CceEEecCCCCcE
Confidence 642 11 11000111111222 2245655655 3577889876654
No 459
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.79 E-value=14 Score=34.46 Aligned_cols=61 Identities=8% Similarity=-0.073 Sum_probs=40.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC-ccccccc---ccccceeEEEEcC--CCCEEEEE
Q 009203 469 ALINQSWSPDGLYITSGSADPVIHLFDIRYSAN-KPSQSIR---AHQKRVFKAVWHY--SHPLLISI 529 (540)
Q Consensus 469 ~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~---~h~~~i~~l~~s~--~~~~l~s~ 529 (540)
....++++++|.++++--..+.|..|+...+.. ..+..+. ..-..+.++.+.+ +|.+.+.+
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 556789999999999999999999999985211 1111221 1133678899988 77765554
No 460
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=8.9 Score=37.21 Aligned_cols=108 Identities=7% Similarity=0.151 Sum_probs=75.3
Q ss_pred ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 009203 413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIH 492 (540)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~ 492 (540)
...+.+.++.|++++ +.+++--.+++|.+++....+..... ....+.....|.+..|+.+ .-+|.....| +-
T Consensus 64 ~d~G~I~SIkFSlDn---kilAVQR~~~~v~f~nf~~d~~~l~~---~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e 135 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDN---KILAVQRTSKTVDFCNFIPDNSQLEY---TQECKTKNANILGFCWTSS-TEIAFITDQG-IE 135 (657)
T ss_pred cCCCceeEEEeccCc---ceEEEEecCceEEEEecCCCchhhHH---HHHhccCcceeEEEEEecC-eeEEEEecCC-eE
Confidence 344678999999998 79999999999999998543321111 1122233446899999865 5666665555 77
Q ss_pred EEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203 493 LFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 493 iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~ 529 (540)
+|..... .+.++..+.|...|+-..|.++.+.+.-+
T Consensus 136 ~y~v~pe-krslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 136 FYQVLPE-KRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred EEEEchh-hhhhhhhhhcccCccEEEEccccceEeee
Confidence 8877752 45666777788889999999988754433
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.45 E-value=1.9 Score=36.78 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.3
Q ss_pred ceeEEEEcCCC------CEEEEEEcCCcEEEEe
Q 009203 513 RVFKAVWHYSH------PLLISISSDLNIGLHK 539 (540)
Q Consensus 513 ~i~~l~~s~~~------~~l~s~~~dg~v~iw~ 539 (540)
.|.+++|||.| -+|++...+|.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 68899999966 3789999999999985
No 462
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.71 E-value=15 Score=33.22 Aligned_cols=191 Identities=15% Similarity=0.092 Sum_probs=112.5
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE 356 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 356 (540)
-..++-.|||..-+++ ...+.|--.|..+++. .+.--+ .......|..-| ++..-++-+.. .|.-.|-
T Consensus 64 p~dvapapdG~VWft~----qg~gaiGhLdP~tGev---~~ypLg---~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dp 131 (353)
T COG4257 64 PFDVAPAPDGAVWFTA----QGTGAIGHLDPATGEV---ETYPLG---SGASPHGIVVGP-DGSAWITDTGL-AIGRLDP 131 (353)
T ss_pred ccccccCCCCceEEec----CccccceecCCCCCce---EEEecC---CCCCCceEEECC-CCCeeEecCcc-eeEEecC
Confidence 3467788999888888 8888888889888732 222222 234466788888 77666654433 4555555
Q ss_pred CCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC---------CeEEEEECCCCCeeeeeccCccEEEEeecCCC
Q 009203 357 RDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD---------KRIIGFDAGVGRADFKHQIESKCMSVLPNPCD 427 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (540)
.+.+.. ...+....-........|.+.|++-+++... +.|++|+.-. +.....++..|++
T Consensus 132 kt~evt--~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq---------G~gpyGi~atpdG 200 (353)
T COG4257 132 KTLEVT--RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ---------GGGPYGICATPDG 200 (353)
T ss_pred cccceE--EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC---------CCCCcceEECCCC
Confidence 554421 1111122344567889999999988887631 2344444332 2334556666766
Q ss_pred CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
...++.-.++.|-..|..++....... .......-..+--+|.|..-++-...+.+..||..+
T Consensus 201 ---svwyaslagnaiaridp~~~~aev~p~-----P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 201 ---SVWYASLAGNAIARIDPFAGHAEVVPQ-----PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ---cEEEEeccccceEEcccccCCcceecC-----CCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 345554555566666665543221110 111122344556677888888877788888888775
No 463
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.57 E-value=9.3 Score=30.49 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=68.1
Q ss_pred EEEecCCCeEEEEeecCCCCCeEEEEecCCCC-----CceeEEeecCCCCcccceeEEEEeCC----CCCEEEEEecCCc
Q 009203 280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTK-----GRACVTFLDDKPHVKGIINSIIFLPW----ENPCFATGGSDHA 350 (540)
Q Consensus 280 ~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~ 350 (540)
-.|......|+.+ +..+.|.|++..... ....++.+.. ...|++|+-.+. ..+.|+.|+. ..
T Consensus 4 GkfDG~~pcL~~a----T~~gKV~IH~ph~~~~~~~~~~~~i~~LNi----n~~italaaG~l~~~~~~D~LliGt~-t~ 74 (136)
T PF14781_consen 4 GKFDGVHPCLACA----TTGGKVFIHNPHERGQRTGRQDSDISFLNI----NQEITALAAGRLKPDDGRDCLLIGTQ-TS 74 (136)
T ss_pred EEeCCCceeEEEE----ecCCEEEEECCCccccccccccCceeEEEC----CCceEEEEEEecCCCCCcCEEEEecc-ce
Confidence 4555555678888 788899999876432 1223444443 345777765442 3567777775 67
Q ss_pred EEEEecCCCCCccccceeecccCCcceeEEEecc---CCCEEEEEeCCCeEEEEECCCC
Q 009203 351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ---QKQIVLSAGADKRIIGFDAGVG 406 (540)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~~dg~i~iwd~~~~ 406 (540)
+..||+..... .+. ..-.+.|+++.+-. ...-++..+.+..|.-||....
T Consensus 75 llaYDV~~N~d-----~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 75 LLAYDVENNSD-----LFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred EEEEEcccCch-----hhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 99999998753 222 22446788887732 1233444555567777777643
No 464
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.48 E-value=21 Score=34.49 Aligned_cols=186 Identities=11% Similarity=0.038 Sum_probs=99.1
Q ss_pred CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec----cCCCE--EEEEeC-C---CeEEEEECC--C
Q 009203 338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM----QQKQI--VLSAGA-D---KRIIGFDAG--V 405 (540)
Q Consensus 338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s----~~~~~--l~~~~~-d---g~i~iwd~~--~ 405 (540)
...+++....++-+.+||+..... +.+. .+.++.+..- -+|+. |+.++. + ..|++|.+. +
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~l----q~~~----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~ 138 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKEL----QSLP----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT 138 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EE----EEE-----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred ccceEEEEeCCCCEEEEcCCCcEE----Eeec----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence 456777778888999999988652 3221 2334433331 13433 344432 2 468888664 3
Q ss_pred CCeeeeec-------c--CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc------eeeeeccccccCccccCe
Q 009203 406 GRADFKHQ-------I--ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT------EIHAFGWKQESSESQSAL 470 (540)
Q Consensus 406 ~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~v 470 (540)
+....... . ...-.|+.-++.... .+++....+|.+..|.+..... .++.+. -.+.+
T Consensus 139 g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~-~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-------~~sQ~ 210 (381)
T PF02333_consen 139 GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGA-LYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-------VGSQP 210 (381)
T ss_dssp TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT---EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------SS-E
T ss_pred CcceEcCCCCcccccccccceeeEEeecCCCCc-EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-------CCCcc
Confidence 33211111 1 112344444554333 5777778889998888863221 222221 12368
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeccCCC---Ccccccccc--cccceeEEEEc--CCCC--EEEEEEcCCcEEEEe
Q 009203 471 INQSWSPDGLYITSGSADPVIHLFDIRYSA---NKPSQSIRA--HQKRVFKAVWH--YSHP--LLISISSDLNIGLHK 539 (540)
Q Consensus 471 ~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~--h~~~i~~l~~s--~~~~--~l~s~~~dg~v~iw~ 539 (540)
-.|..+....+|+.|-++.-|+-|+.+... +..+....+ ....|-.|++- .++. +|+|.-.+++..||+
T Consensus 211 EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 211 EGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred eEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 888998888899999988878778776321 122222222 33467777764 3443 455555677888886
No 465
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.43 E-value=21 Score=34.40 Aligned_cols=54 Identities=7% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCCEEEEEeCC----------------------CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 478 DGLYITSGSAD----------------------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 478 ~g~~l~sg~~d----------------------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
++++++.|+.+ ..+.+||........+..+.... -...+..-++++++.||.+.
T Consensus 257 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~--~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 257 NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL--AYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc--eeeEEEEcCCEEEEEeccCC
Confidence 67788888753 14678888764333333333211 12223344778888888663
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=31 Score=36.03 Aligned_cols=200 Identities=14% Similarity=0.083 Sum_probs=92.4
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
++.-+|..+|. ++.=..+.-..|+|+++.. ..+.++.. .| ..+..+.|+.+..+|+. ..+|++.
T Consensus 44 gGpIAV~r~p~--~~~~~~~a~~~I~If~~sG-~lL~~~~w-------~~-~~lI~mgWs~~eeLI~v-----~k~g~v~ 107 (829)
T KOG2280|consen 44 GGPIAVTRSPS--KLVPLYSARPYIRIFNISG-QLLGRILW-------KH-GELIGMGWSDDEELICV-----QKDGTVH 107 (829)
T ss_pred CCceEEEeccc--ccccccccceeEEEEeccc-cchHHHHh-------cC-CCeeeecccCCceEEEE-----eccceEE
Confidence 34555555552 1111113445688888763 33333321 22 25778999988777766 6999999
Q ss_pred EEecCCCCCceeEEee-cCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE-EecCCCCCccccceeecccCCcceeEEE
Q 009203 304 VLNLNKTKGRACVTFL-DDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL-WSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
+|++-.. . +... -+.+.....|..+.|.. +|-.+.+ .+|.+.+ -+..... .++...+. +..-...|-.
T Consensus 108 Vy~~~ge-~---ie~~svg~e~~~~~I~ec~~f~-~GVavlt--~~g~v~~i~~~~~~~-~~~~~diP--~~~~~~~~Wt 177 (829)
T KOG2280|consen 108 VYGLLGE-F---IESNSVGFESQMSDIVECRFFH-NGVAVLT--VSGQVILINGVEEPK-LRKMPDIP--YNELPKSCWT 177 (829)
T ss_pred Eeecchh-h---hcccccccccccCceeEEEEec-CceEEEe--cCCcEEEEcCCCcch-hhhCCCCC--CccCCCccee
Confidence 9998732 1 1110 11111223355555544 5533333 3444443 3333322 11111111 1111112222
Q ss_pred eccCCC---EEEEEe-CCC-eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 382 GMQQKQ---IVLSAG-ADK-RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 382 ~s~~~~---~l~~~~-~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
..+++. .++-.. ..+ .+..-+..+.+..........+..+..+|.. .+|+--...|.|.+-+....+.
T Consensus 178 ~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~---~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 178 VFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNR---RFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred EecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCc---ceEEEEecCCcEEEEecchhhh
Confidence 222211 111111 000 0111111112211122223566677777766 6888888889998888876553
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.05 E-value=0.18 Score=48.62 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=98.2
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCE-EEEEecCCcEEEEe
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC-FATGGSDHAVVLWS 355 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i~iwd 355 (540)
.....|-+.+.-++.+ +.+..+..||-... ..+.. ...+....++|.- +++. ++.+-..+.+.+||
T Consensus 37 pi~~~w~~e~~nlava----ca~tiv~~YD~agq------~~le~--n~tg~aldm~wDk-egdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVA----CANTIVIYYDKAGQ------VILEL--NPTGKALDMAWDK-EGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred cceeeEecCCCceehh----hhhhHHHhhhhhcc------eeccc--CCchhHhhhhhcc-ccchhhhhhhcCCCeeech
Confidence 3456788887778887 78888999987632 11222 1235567788887 5544 45566779999999
Q ss_pred cCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEE
Q 009203 356 ERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMV 433 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 433 (540)
+.+... +.+...+ |.... +.|++.+..++.+...|.+.+++..+.+.+.... +.....++++.+.+ +.
T Consensus 104 ~n~eyt----qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd----~v 173 (615)
T KOG2247|consen 104 VNSEYT----QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED----YV 173 (615)
T ss_pred hhhhhH----HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc----ee
Confidence 987542 3332211 22222 7889988899999899999999998766554433 55677888888876 66
Q ss_pred EEEcCCCeEEEE
Q 009203 434 QTGTPGRQLRLY 445 (540)
Q Consensus 434 ~~~~~dg~v~i~ 445 (540)
+.++.|..+.+-
T Consensus 174 il~dcd~~L~v~ 185 (615)
T KOG2247|consen 174 ILCDCDNTLSVT 185 (615)
T ss_pred eecCcHHHHHHh
Confidence 666666554433
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.57 E-value=23 Score=33.79 Aligned_cols=161 Identities=12% Similarity=0.156 Sum_probs=82.8
Q ss_pred CceEEEEEecCCCcEEEEEeCCce------EEEEEcCCCC-Ccceee--cccccCC-CC-----CCCCceeEEEecCCCe
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGV------IRLWQLQSRG-SGASLL--STTDCLS-PK-----HRRWPEDIAWHPQGNS 288 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~------v~iw~~~~~~-~~~~~~--~~~~~~~-~~-----h~~~V~~~~~~~~~~~ 288 (540)
+.+..|.+.|+++. +++-+.+|. +...++.... ....+. ....... .| -.-..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 67899999975454 555566666 5555544310 111110 0000000 01 0113457888888888
Q ss_pred EEEEeecCCCC------CeEEEEecCCCCCceeEEeecC---------CCCcccceeEEEEeCCCCCEEEEEec-----C
Q 009203 289 LFSAHTADSGD------SQISVLNLNKTKGRACVTFLDD---------KPHVKGIINSIIFLPWENPCFATGGS-----D 348 (540)
Q Consensus 289 l~s~~~~~~~d------~~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~p~~~~~l~s~~~-----d 348 (540)
+++. -.+ ..|..++.. +.....+..-.. ........-+|+++| ++..|+++.. |
T Consensus 99 ~is~----E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 99 WISS----EGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQD 172 (326)
T ss_pred EEEe----CCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccCC
Confidence 8886 566 788888876 433222211111 011234588999999 8886665532 2
Q ss_pred C---------cEEEE--ecCCCCCccccceeeccc-----CCcceeEEEeccCCCEEEE
Q 009203 349 H---------AVVLW--SERDAEDSWKPKALHRNL-----HSSAVMGVAGMQQKQIVLS 391 (540)
Q Consensus 349 g---------~i~iw--d~~~~~~~~~~~~~~~~~-----~~~~v~~l~~s~~~~~l~~ 391 (540)
+ .++|+ |..+.............. ....|..+.+.+++++|+.
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 14554 444311111111121111 3567888888888886664
No 469
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.35 E-value=6.4 Score=38.59 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=51.8
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEee-cCC--------------CCCceEEEE
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLP-NPC--------------DFNLFMVQT 435 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~-~~~--------------~~~~~~l~~ 435 (540)
....+.+++.+|++++.++...-|.|.++|+.++..+...+.- ..+.-+.. ... .....+++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 3456788999999999999888899999999988776543321 11111110 000 111234455
Q ss_pred EcCCCeEEEEECCCCcc
Q 009203 436 GTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 436 ~~~dg~v~i~d~~~~~~ 452 (540)
.-.-|.|.||.++++..
T Consensus 386 aprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPR 402 (415)
T ss_pred eccCCeEEEEecCCCCE
Confidence 66788999999987654
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.30 E-value=16 Score=40.58 Aligned_cols=145 Identities=10% Similarity=0.121 Sum_probs=76.9
Q ss_pred eCCCeEEEEECCCCCeeee-eccCccEEEEee-cCCC----CCceEEEEEcCCCeEEEEECCCCcc--eeeeeccccccC
Q 009203 393 GADKRIIGFDAGVGRADFK-HQIESKCMSVLP-NPCD----FNLFMVQTGTPGRQLRLYDIRLRQT--EIHAFGWKQESS 464 (540)
Q Consensus 393 ~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~-~~~~----~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~ 464 (540)
+-|..+.+|+..++..... ......+..+.. .|.- +..++++.-+.--.|.++-+.-.+. ....+.-.-...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 4577899999998554333 223333443322 1110 0112232222333455544322111 000000000112
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc--CCC---Cc-----------------cccccc-ccccceeEEEEcC
Q 009203 465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIR--YSA---NK-----------------PSQSIR-AHQKRVFKAVWHY 521 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~--~~~---~~-----------------~~~~~~-~h~~~i~~l~~s~ 521 (540)
.....|+++....+|+.+++|- ||. +|.+. ..+ ++ .+..+. .+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 2245688999888898888774 554 44432 100 00 011223 5677999999988
Q ss_pred CCCEEEEEEcCCcEEEEeC
Q 009203 522 SHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 522 ~~~~l~s~~~dg~v~iw~l 540 (540)
.-..+.+-+.-|+|.+|++
T Consensus 253 SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred ccceeeeeccCceEEEEEc
Confidence 8889999999999999986
No 471
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.86 E-value=5.1 Score=34.14 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=26.0
Q ss_pred CcceeEEEeccCC------CEEEEEeCCCeEEEEECCC
Q 009203 374 SSAVMGVAGMQQK------QIVLSAGADKRIIGFDAGV 405 (540)
Q Consensus 374 ~~~v~~l~~s~~~------~~l~~~~~dg~i~iwd~~~ 405 (540)
...+.+++|||.| -+|++.+.++.|.+|....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3479999999954 4788889999999998764
No 472
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=87.50 E-value=4.1 Score=27.73 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=41.8
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
+.+..++.|+.+-++...|...|+.+.+.++..-..+..+.+.+..++..+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999888888888877777776666554
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.38 E-value=48 Score=36.05 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=74.2
Q ss_pred CCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCC--ceeEEeecCC-------CCcccceeEEEEeCCCCCEEEE
Q 009203 275 RWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKG--RACVTFLDDK-------PHVKGIINSIIFLPWENPCFAT 344 (540)
Q Consensus 275 ~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~l~s 344 (540)
.+..+++|+|. ...||+. ...|...||++..... .......... +...+....+.|.+ +.+.|+.
T Consensus 146 ~~~aDv~FnP~~~~q~AiV----D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv 220 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIV----DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLV 220 (765)
T ss_pred CccceEEeccCccceEEEE----eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEE
Confidence 34678999984 4588888 9999999999922111 0111111110 00112345788988 7677777
Q ss_pred EecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC--CCEEEEEeCCCeEEEEECCC
Q 009203 345 GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGV 405 (540)
Q Consensus 345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~ 405 (540)
++. ..+.++|+.+.... ..+........|.++.-++. +..++..+ ..|...|+..
T Consensus 221 ~~r-~~l~~~d~~~~~~~---~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 221 CNR-SKLMLIDFESNWQT---EYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred EcC-CceEEEECCCCCcc---chhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 665 67899999987641 11333345677899988886 34444433 4688888876
No 474
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.37 E-value=31 Score=33.79 Aligned_cols=40 Identities=3% Similarity=-0.021 Sum_probs=19.8
Q ss_pred EEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203 491 IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 491 i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
+.+||..+.....+..+..-.....+ ..-++.+++.||..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~a--v~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVS--VSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEE--EEeCCEEEEEcCCC
Confidence 45788886433333333221111122 33367788888754
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.34 E-value=29 Score=33.87 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=64.1
Q ss_pred EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc--E
Q 009203 341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK--C 418 (540)
Q Consensus 341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~ 418 (540)
.+..+..+|.|.-.|..++..+|...... ....+.+-.+..+|+ ++.++.+|.++.+|.++|+.+........ .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 45555778888888888887655444331 011122222222555 77788899999999998998877666651 1
Q ss_pred EEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
.......+ ..+..++.++.+...|..++....
T Consensus 146 ~~~~v~~~----~~v~~~s~~g~~~al~~~tG~~~W 177 (370)
T COG1520 146 ASPPVVGD----GTVYVGTDDGHLYALNADTGTLKW 177 (370)
T ss_pred ecCcEEcC----cEEEEecCCCeEEEEEccCCcEEE
Confidence 11111112 244555577888888888776533
No 476
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.12 E-value=16 Score=36.08 Aligned_cols=142 Identities=10% Similarity=0.095 Sum_probs=79.4
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC--------eEEEEeecCCCCCeEEEEecCC
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN--------SLFSAHTADSGDSQISVLNLNK 309 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~--------~l~s~~~~~~~d~~i~vwd~~~ 309 (540)
++..|+....+.--|++.|+.+..... |.+ | -+.|.|+.+ .|+.. .+..|.-.|.+.
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~--------~dd-v-vVqy~p~~kf~qmt~eqtlvGl-----S~~svFrIDPR~ 546 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDL--------KDD-V-VVQYNPYFKFQQMTDEQTLVGL-----SDYSVFRIDPRA 546 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeec--------CCc-c-eeecCCchhHHhcCccceEEee-----cccceEEecccc
Confidence 334455555566667777666555532 222 2 356666432 34433 444454455553
Q ss_pred CCCceeEEeecCCC-CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCE
Q 009203 310 TKGRACVTFLDDKP-HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQI 388 (540)
Q Consensus 310 ~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 388 (540)
.. ..+...+.+. .......+..-. ...+++.|+..|.|++||--.... ...+ .+-...|..+..+.+|.+
T Consensus 547 ~g--NKi~v~esKdY~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rA---Ktal--P~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 547 RG--NKIKVVESKDYKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRA---KTAL--PGLGDAIKHIDVTANGKH 617 (776)
T ss_pred cC--Cceeeeeehhccccccccccccc--cCceEEEecCCCceeeehhhcchh---hhcC--cccccceeeeEeecCCcE
Confidence 32 1122222111 011222233222 456899999999999999765442 1122 346678999999999999
Q ss_pred EEEEeCCCeEEEEECC
Q 009203 389 VLSAGADKRIIGFDAG 404 (540)
Q Consensus 389 l~~~~~dg~i~iwd~~ 404 (540)
+++.+.. .+.+-|++
T Consensus 618 ilaTCk~-yllL~d~~ 632 (776)
T COG5167 618 ILATCKN-YLLLTDVP 632 (776)
T ss_pred EEEeecc-eEEEEecc
Confidence 8877664 77777775
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.07 E-value=7.2 Score=43.06 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=30.3
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.+..+|..++.+...+.+.+-+..|.|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567899999988888999999999999999986
No 478
>PRK10115 protease 2; Provisional
Probab=86.90 E-value=47 Score=35.51 Aligned_cols=246 Identities=9% Similarity=0.040 Sum_probs=114.8
Q ss_pred CceEEEEEecCCCcEEEEEeC-----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC--
Q 009203 224 RKLRSLSLNPVNEQLFVTSAL-----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD-- 296 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~-- 296 (540)
-.+..+.|+|| +++|+.+.. ...+++-|+.++..+..... + .-..++|.+|++.|+......
T Consensus 127 ~~l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-------~---~~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPD-NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-------N---VEPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCC-CCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-------C---cceEEEEeeCCCEEEEEEecCCC
Confidence 34677889996 777776532 23588888877653222211 1 114599999998776653211
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CCcEEEEecCCCCCccccceeecccC
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DHAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
.....|..+++.++.... ...+.... ....-..+.+.++.+++..+. ++.+.+|+....... ...+... .
T Consensus 196 ~~~~~v~~h~lgt~~~~d-~lv~~e~~---~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~ 268 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQD-ELVYEEKD---DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE--PFVFLPR-R 268 (686)
T ss_pred CCCCEEEEEECCCChhHC-eEEEeeCC---CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC--ceEEEEC-C
Confidence 133578888888773211 22233211 122212233336666655443 356888885432111 1111111 1
Q ss_pred CcceeEEEeccCCCEEEEEeCC----CeEEEEECCC-CCe--eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203 374 SSAVMGVAGMQQKQIVLSAGAD----KRIIGFDAGV-GRA--DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD 446 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d 446 (540)
.+....+. +. +..++..+.. ..|...++.. ++. +........+..+.+..+ .++++...+|.-+++-
T Consensus 269 ~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 269 KDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----WLVVEERQRGLTSLRQ 342 (686)
T ss_pred CCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----EEEEEEEeCCEEEEEE
Confidence 12222222 22 2333333332 2344445542 221 222222335556666533 4677777777755554
Q ss_pred CCCCcceeeeeccccccCccccCeEEEEEc--CCCC-EEEEEe---CCCcEEEEeccC
Q 009203 447 IRLRQTEIHAFGWKQESSESQSALINQSWS--PDGL-YITSGS---ADPVIHLFDIRY 498 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~g~-~l~sg~---~dg~i~iwd~~~ 498 (540)
+.........+ .+ .....+..+.++ +++. ++++.+ .-+.++.||+.+
T Consensus 343 ~~~~~~~~~~l----~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 343 INRKTREVIGI----AF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred EcCCCCceEEe----cC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 43221111111 11 111123333344 3443 444333 246788888775
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.74 E-value=5 Score=38.77 Aligned_cols=167 Identities=14% Similarity=0.150 Sum_probs=91.1
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC-ccccee-EEEEeCCCCCEEEEEecCCcE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH-VKGIIN-SIIFLPWENPCFATGGSDHAV 351 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~p~~~~~l~s~~~dg~i 351 (540)
...|..+-..|||+.|..- + ...+.++++.+..- +..+..+..++ ....|+ .+.... .+.-+..++.||-|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~----~-g~~~~v~~L~~r~l-~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~v 292 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVR----T-GSELVVALLDKRSL-QIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLV 292 (733)
T ss_pred ccchHhhEECCCCCEEEEe----c-CCeEEEEeeccccc-chhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCce
Confidence 3557788899999999886 3 37888998875421 11122221111 011122 222222 55667788889988
Q ss_pred EEE-ecCCCCCccccceeec-ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203 352 VLW-SERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN 429 (540)
Q Consensus 352 ~iw-d~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (540)
.-| |++.+.. .....+.. .-....+.-+.-..+.+-+++-+..|++.++.....+.+.....-....-+.++|.+
T Consensus 293 sQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~-- 369 (733)
T COG4590 293 SQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQ-- 369 (733)
T ss_pred eeeeeeecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCccc--
Confidence 776 5554432 00111110 001122222222224456777788888888876655555443333344556677765
Q ss_pred ceEEEEEcCCCeEEEEECCCCcc
Q 009203 430 LFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 430 ~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
.++++ -..|.++++.+.+...
T Consensus 370 -~~Ll~-e~~gki~~~~l~Nr~P 390 (733)
T COG4590 370 -AYLLS-EDQGKIRLAQLENRNP 390 (733)
T ss_pred -chhee-ecCCceEEEEecCCCC
Confidence 34554 3457899998886554
No 480
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.60 E-value=8.5 Score=26.59 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=42.9
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhccC
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQ 77 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 77 (540)
+.+...+.|.-.++..++-|+.|...+++.+..++.++.+++-+-.++..++..
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 445677788888888888889998888888888888888888877777766544
No 481
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.56 E-value=21 Score=31.17 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=37.0
Q ss_pred CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203 287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS 347 (540)
Q Consensus 287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 347 (540)
+.|+.+ ...+.|.+|++... .......+.. -+.|..+.++. .|++|+|--.
T Consensus 29 d~Lfva----~~g~~Vev~~l~~~-~~~~~~~F~T----v~~V~~l~y~~-~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVA----ASGCKVEVYDLEQE-ECPLLCTFST----VGRVLQLVYSE-AGDYLVTLEE 79 (215)
T ss_pred ceEEEE----cCCCEEEEEEcccC-CCceeEEEcc----hhheeEEEecc-ccceEEEEEe
Confidence 556555 56788999999833 3345555553 46799999999 9999998643
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=86.49 E-value=54 Score=35.78 Aligned_cols=292 Identities=9% Similarity=0.071 Sum_probs=0.0
Q ss_pred cCceEEEEEecCC-----CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC---------e
Q 009203 223 KRKLRSLSLNPVN-----EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN---------S 288 (540)
Q Consensus 223 ~~~V~~l~~spd~-----~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~---------~ 288 (540)
+..|.|+++.++. .++++.|+.|+.+++..+....++..+.. .+-..++.++.+-+... +
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~------q~l~~~~~s~~iv~~~~~~~~~~~~L~ 655 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV------QGLSSPPESLCIVEMEATGGTDVAQLY 655 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc------cccCCCccceEEEEecccCCccceeEE
Q ss_pred EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---------------------
Q 009203 289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS--------------------- 347 (540)
Q Consensus 289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--------------------- 347 (540)
|.+| -.+|.+.-+-+++-.+.-....-...+........+...- ....|+..+.
T Consensus 656 l~~G----L~NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~~~~-~s~vL~lSsr~wl~y~~~~~~h~t~Isy~~l 730 (1205)
T KOG1898|consen 656 LLIG----LRNGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPISMRG-QSDVLALSSRPWLLYTYQQEFHLTPISYSTL 730 (1205)
T ss_pred EEec----ccccEEEEEEecccccceeeeheeeeccccceEEEEeecC-cceeEEecCChhhhhhhcceeeeecccccch
Q ss_pred -------------------CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe---------------
Q 009203 348 -------------------DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG--------------- 393 (540)
Q Consensus 348 -------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~--------------- 393 (540)
..++++.-+...........+. +......+..+|....++.+.
T Consensus 731 ~~as~~~S~qcpeGiv~i~~n~l~i~~~~~~g~~~n~~~~~---l~~tprkvv~h~es~lLii~~td~~~~~~~~a~~~~ 807 (1205)
T KOG1898|consen 731 EHASPFCSEQCPEGIVAISKNTLRIIALDKLGKVLNVDGFP---LAYTPRKVVIHPESGLLIIGRTDHNATLTKDARKNQ 807 (1205)
T ss_pred hccccccccCCCcchhhhhhhhhheeeehhhcccccccccc---cccCcceEEEecCCCeEEEEEecccchhhHHHhhhh
Q ss_pred --------------------------------------CCCe-----EEEEECCCCCeeeeeccCcc-----EEEEeecC
Q 009203 394 --------------------------------------ADKR-----IIGFDAGVGRADFKHQIESK-----CMSVLPNP 425 (540)
Q Consensus 394 --------------------------------------~dg~-----i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~ 425 (540)
..|. |+++|..+++.+.....+.. +.+..|+.
T Consensus 808 ~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~ 887 (1205)
T KOG1898|consen 808 MEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSS 887 (1205)
T ss_pred hhcccccccccccchhhccchhhhccccccccccccCcccccCccceEEEEcCCCCceEEEEeecCCcchhheeeeeecc
Q ss_pred CCCCceEEEEEcC-----------CCeEEEEECCCCcceeeeeccccccCccccCeEEE--EEcCCCCEEEEEeCCCcEE
Q 009203 426 CDFNLFMVQTGTP-----------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ--SWSPDGLYITSGSADPVIH 492 (540)
Q Consensus 426 ~~~~~~~l~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~g~~l~sg~~dg~i~ 492 (540)
.+.. .++++|.. +|.++.|++-.....+..+ |...+.++ +..|-+.++.+| ....++
T Consensus 888 ~~~~-~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell--------h~T~~~~~v~Ai~~f~~~~Lag-vG~~l~ 957 (1205)
T KOG1898|consen 888 SEYQ-PFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL--------HKTEIPGPVGAICPFQGRVLAG-VGRFLR 957 (1205)
T ss_pred CCCc-eEEEEEeeccccccccccCCCceEEEEEEecCceeeee--------eccCCCccceEEeccCCEEEEe-cccEEE
Q ss_pred EEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 493 LFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 493 iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+||+.....-....++.-...|+.+.| .+..++.|..--.|.++.+
T Consensus 958 ~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen 958 LYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred EeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEE
No 483
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=86.32 E-value=25 Score=33.60 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=76.2
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc--eeEEeecCCCCcccceeEEEEeCCCCCEEEE--------
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR--ACVTFLDDKPHVKGIINSIIFLPWENPCFAT-------- 344 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-------- 344 (540)
+....++|...|.-|+.+ |...-+|.+.-.... .......+.+ -...+.+...+ ++....|
T Consensus 115 GRPLGl~f~~~ggdL~Va------DAYlGL~~V~p~g~~a~~l~~~~~G~~--~kf~N~ldI~~-~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVA------DAYLGLLKVGPEGGLAELLADEAEGKP--FKFLNDLDIDP-EGVVYFTDSSSKYDR 185 (376)
T ss_pred CCcceEEeccCCCeEEEE------ecceeeEEECCCCCcceeccccccCee--eeecCceeEcC-CCeEEEeccccccch
Confidence 446789999988667776 555555555422111 1111111110 01133444444 4433333
Q ss_pred ---------EecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC--CeEEEEECCC--CC-eee
Q 009203 345 ---------GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD--KRIIGFDAGV--GR-ADF 410 (540)
Q Consensus 345 ---------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--g~i~iwd~~~--~~-~~~ 410 (540)
+..+|.+.-||..+... ..+.. .-.-.+.++.|||+.+++.+-.. ...+.|=-.. |. .++
T Consensus 186 rd~~~a~l~g~~~GRl~~YD~~tK~~----~VLld--~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvF 259 (376)
T KOG1520|consen 186 RDFVFAALEGDPTGRLFRYDPSTKVT----KVLLD--GLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVF 259 (376)
T ss_pred hheEEeeecCCCccceEEecCcccch----hhhhh--cccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhH
Confidence 33467777788777652 23321 33456789999999998876442 2334443221 11 122
Q ss_pred eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 411 KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
.....+..-.+..++.+. .+++..+.-.. +|++-.
T Consensus 260 a~~LPG~PDNIR~~~~G~--fWVal~~~~~~--~~~~~~ 294 (376)
T KOG1520|consen 260 AEGLPGYPDNIRRDSTGH--FWVALHSKRST--LWRLLM 294 (376)
T ss_pred hhcCCCCCcceeECCCCC--EEEEEecccch--HHHhhh
Confidence 233444444555555442 34444333222 555543
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.09 E-value=34 Score=33.11 Aligned_cols=195 Identities=12% Similarity=0.111 Sum_probs=103.0
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC---CCCCE--EEEEec-C---CcEEEEe
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP---WENPC--FATGGS-D---HAVVLWS 355 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~--l~s~~~-d---g~i~iwd 355 (540)
...+|+.. ..++-+.+||+.. +.++.+.. +.++.+..-. .++.. |+.++. + .+|++|.
T Consensus 67 ~kSlIigT----dK~~GL~VYdL~G----k~lq~~~~-----Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~ 133 (381)
T PF02333_consen 67 AKSLIIGT----DKKGGLYVYDLDG----KELQSLPV-----GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR 133 (381)
T ss_dssp GG-EEEEE----ETTTEEEEEETTS-----EEEEE-S-----S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred ccceEEEE----eCCCCEEEEcCCC----cEEEeecC-----CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence 34456655 6788899999983 34555532 3344444321 02222 344442 2 4699997
Q ss_pred cCCCCCccccceeecc-----cCCcceeEEEe--cc-CCC-EEEEEeCCCeEEEEECC---CCC----eeeeeccCccEE
Q 009203 356 ERDAEDSWKPKALHRN-----LHSSAVMGVAG--MQ-QKQ-IVLSAGADKRIIGFDAG---VGR----ADFKHQIESKCM 419 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~-----~~~~~v~~l~~--s~-~~~-~l~~~~~dg~i~iwd~~---~~~----~~~~~~~~~~~~ 419 (540)
+...... +..+... .....++.+|+ ++ +|. +++....+|.+..|-+. .+. .++.+...+.+-
T Consensus 134 id~~~g~--L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E 211 (381)
T PF02333_consen 134 IDPDTGE--LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE 211 (381)
T ss_dssp EETTTTE--EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE
T ss_pred ecCCCCc--ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce
Confidence 7632110 1111110 12234677776 33 354 55667788988777664 332 355667777777
Q ss_pred EEeecCCCCCceEEEEEcCCCeEEEEECCCCcce-eeeeccccccCccccCeEEEEEc--CCC-CE-EEEEeCCCcEEEE
Q 009203 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE-IHAFGWKQESSESQSALINQSWS--PDG-LY-ITSGSADPVIHLF 494 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s--p~g-~~-l~sg~~dg~i~iw 494 (540)
.+..+... .+|+.+-.+.-|.-|+..-.... ...+... .-......|-.|++- .+| .| |++.-.+++..||
T Consensus 212 GCVVDDe~---g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy 287 (381)
T PF02333_consen 212 GCVVDDET---GRLYVGEEDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVY 287 (381)
T ss_dssp EEEEETTT---TEEEEEETTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEE
T ss_pred EEEEeccc---CCEEEecCccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEE
Confidence 77776654 48888999999999988733211 1111000 112234567777763 343 34 4455567889999
Q ss_pred eccC
Q 009203 495 DIRY 498 (540)
Q Consensus 495 d~~~ 498 (540)
+...
T Consensus 288 ~r~~ 291 (381)
T PF02333_consen 288 DREG 291 (381)
T ss_dssp ESST
T ss_pred ecCC
Confidence 9885
No 485
>PRK13684 Ycf48-like protein; Provisional
Probab=85.89 E-value=34 Score=32.83 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=79.6
Q ss_pred CcceeEEEeccCCCEEEEEeCCCeEEE-EECCCCCeee--eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKRIIG-FDAGVGRADF--KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
...+.++.+.+++.+++++ ..|.+.. +|- .++.-. .......+.++.+.+++ ..++++ ..|.+.+=..+.+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g---~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDG---NLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCC---CEEEEe-cCCEEEEccCCCC
Confidence 4578899999987766554 4455443 221 122211 12234566777777766 345544 4565543223322
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEcCCCCEEE
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWHYSHPLLI 527 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s~~~~~l~ 527 (540)
.. ...... ........+.++.+.+++..+++| .+|.|. ...+. ++...... .-....+.+.|..++..++
T Consensus 246 ~s-W~~~~~--~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~--G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 246 ES-WSKPII--PEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG--GKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred Cc-cccccC--CccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC--CCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 21 110000 000112357889999988766655 567554 33443 33333322 1123577888877766655
Q ss_pred EEEcCCcEEEEe
Q 009203 528 SISSDLNIGLHK 539 (540)
Q Consensus 528 s~~~dg~v~iw~ 539 (540)
.+..|.|..|+
T Consensus 319 -~G~~G~il~~~ 329 (334)
T PRK13684 319 -LGQRGVLLRYV 329 (334)
T ss_pred -ECCCceEEEec
Confidence 45678887664
No 486
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.82 E-value=23 Score=30.94 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=79.7
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC---eEEEE-ecCCC--
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS---QISVL-NLNKT-- 310 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~---~i~vw-d~~~~-- 310 (540)
..|+.+.....|.+|++....+ .+...+. --+.|..+.++..|++|++-=.. .... .+++| +++..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~--~~~~~F~-----Tv~~V~~l~y~~~GDYlvTlE~k-~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC--PLLCTFS-----TVGRVLQLVYSEAGDYLVTLEEK-NKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC--ceeEEEc-----chhheeEEEeccccceEEEEEee-cCCccceEEEEEEEhhhhcc
Confidence 3444435567899999984432 2222222 22668999999999999996111 1222 55664 33221
Q ss_pred -CCceeEEeecCCC------------------CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-ccccceeec
Q 009203 311 -KGRACVTFLDDKP------------------HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED-SWKPKALHR 370 (540)
Q Consensus 311 -~~~~~~~~~~~~~------------------~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~ 370 (540)
...-.++.. ++. .-...+.+++..|.+|++++.+ ++.+.+|.+..... ..+...+..
T Consensus 101 ~~~~v~vRia-G~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 101 ENSPVRVRIA-GHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred cCCcEEEEEc-ccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEec
Confidence 111121111 100 1134578899999777766643 46788887764432 111111111
Q ss_pred -----ccCC-cceeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203 371 -----NLHS-SAVMGVAGMQQKQIVLSAGADKRIIGFDA 403 (540)
Q Consensus 371 -----~~~~-~~v~~l~~s~~~~~l~~~~~dg~i~iwd~ 403 (540)
..|. -.+..+++. +.+++..+.. .++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~ic--~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAIC--EGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEEE--eeEEEEecCC-EEEEEEE
Confidence 0111 224555554 5677766543 5666544
No 487
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.47 E-value=10 Score=37.58 Aligned_cols=78 Identities=13% Similarity=-0.008 Sum_probs=54.0
Q ss_pred CcceeEEEeccCCCEEEEEeCCCeEEEEEC---------CCCCe------------eeeeccCccEEEEeecCCCCCceE
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDA---------GVGRA------------DFKHQIESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~---------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 432 (540)
.-.|..+..++.|..++..+.+|.+.++=. ..|+. ++.....-......|+|+.-....
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 345777888999999999999997666542 22322 122222345567889998744457
Q ss_pred EEEEcCCCeEEEEECCCCc
Q 009203 433 VQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~ 451 (540)
|+.-+.|+.|++||+....
T Consensus 183 L~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEEecCcEEEEEecCCcc
Confidence 7788889999999998644
No 488
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=85.46 E-value=2.1 Score=30.92 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=28.6
Q ss_pred HhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203 36 IEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQ 68 (540)
Q Consensus 36 i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 68 (540)
|++...+|+..+.+++.+|.+|.+++.++.+++
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999877765
No 489
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.39 E-value=35 Score=32.53 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCCEEEEEecC-----CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC----eEEEEECCCCCe
Q 009203 338 ENPCFATGGSD-----HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK----RIIGFDAGVGRA 408 (540)
Q Consensus 338 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg----~i~iwd~~~~~~ 408 (540)
++.+++.|+.. ..+..||+.+.+- ..+............+..-++++.+.|+.++ .+.+||+.+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W----~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEW----FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCe----eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 56777777642 3578888887652 1111000111111222233567777777654 356888887553
No 490
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=85.36 E-value=6.9 Score=41.94 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=54.5
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
-.|..... ...++++|..-|.+.+++.........+..... .++..++..+.|.|++..++.+ -..|...+|
T Consensus 151 Avc~SV~~-e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~---~~~ti~~~~~~~~p~~~~~av~----~~~g~ls~w 222 (1023)
T KOG2006|consen 151 AVCCSVNH-EFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDD---DTLTVPDNNSSWRPDQNGFAVT----WEKGFLAFW 222 (1023)
T ss_pred ceeeeccc-hhhhheecccccceeehhhhhhccceeeecccC---ccccccccccCcCCccceeeee----ecccceEEe
Confidence 34555555 488999999999999998865433222221111 3455578889999999999998 788889999
Q ss_pred ecCCC
Q 009203 306 NLNKT 310 (540)
Q Consensus 306 d~~~~ 310 (540)
....+
T Consensus 223 S~~g~ 227 (1023)
T KOG2006|consen 223 SNQGN 227 (1023)
T ss_pred ccccc
Confidence 87654
No 491
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.10 E-value=39 Score=32.91 Aligned_cols=144 Identities=13% Similarity=0.110 Sum_probs=75.4
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
..+|.|.-.|..++.......... ....+.+-.+.. +|+ ++.++.++.++.+|..+++..|....-. . ..
T Consensus 75 ~~~G~i~A~d~~~g~~~W~~~~~~----~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~-~~ 144 (370)
T COG1520 75 TRDGNIFALNPDTGLVKWSYPLLG----AVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S-PY 144 (370)
T ss_pred cCCCcEEEEeCCCCcEEecccCcC----cceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCC---C-eE
Confidence 577777777777763211111110 011222223332 454 7777888889999998888655444321 0 11
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc-EEEEeecCCCCCceEEEEEcC--CCeEEEEECCCCcc
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK-CMSVLPNPCDFNLFMVQTGTP--GRQLRLYDIRLRQT 452 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~ 452 (540)
+..-... ....++.++.++.+...|..+|........... -......|.... -.+..+.. ++.+.-+|..++..
T Consensus 145 ~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 145 YASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec-ceEEEecCCCcceEEEEEccCCcE
Confidence 1111122 233444455789999999999988766544332 112222221111 24455544 56677777766654
No 492
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.07 E-value=12 Score=37.19 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEe-----ccC--CCCccccccc-----------ccccceeEEEEcCCC---CEEE
Q 009203 469 ALINQSWSPDGLYITSGSADPVIHLFD-----IRY--SANKPSQSIR-----------AHQKRVFKAVWHYSH---PLLI 527 (540)
Q Consensus 469 ~v~~~~~sp~g~~l~sg~~dg~i~iwd-----~~~--~~~~~~~~~~-----------~h~~~i~~l~~s~~~---~~l~ 527 (540)
.|..+..++.|..++..|.+|.+.++= -+. ..++++...+ ...-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 577888999999999999999654432 111 0122211111 111256788999986 5777
Q ss_pred EEEcCCcEEEEeC
Q 009203 528 SISSDLNIGLHKI 540 (540)
Q Consensus 528 s~~~dg~v~iw~l 540 (540)
.-+.|..||||++
T Consensus 185 iL~sdnviRiy~l 197 (741)
T KOG4460|consen 185 LLTSDNVIRIYSL 197 (741)
T ss_pred EEecCcEEEEEec
Confidence 7888999999985
No 493
>PRK00846 hypothetical protein; Provisional
Probab=84.42 E-value=4.1 Score=28.90 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=18.4
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHH
Q 009203 34 ALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSK 70 (540)
Q Consensus 34 ~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 70 (540)
..|+...+.+-+.++.|..++.++..+..++.+.+..
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444444444444444444555555555555555533
No 494
>PRK14127 cell division protein GpsB; Provisional
Probab=84.31 E-value=1.7 Score=33.19 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 22 CNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
.+|++++.+.+..-++...+|+..|+.++..++.++.+++.
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777766666677777766665555555444444
No 495
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.02 E-value=49 Score=33.10 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=63.8
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC------CeEEEEeecCC
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG------NSLFSAHTADS 297 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~------~~l~s~~~~~~ 297 (540)
..-+.|+|.|| +++|++--..|.|++++-..+... .+.................|+|+|+- .+|+..++...
T Consensus 30 ~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLWGPD-NQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 45789999996 887777655699999976544311 11111111101125678999999874 35555432211
Q ss_pred ------CCCeEEEEecCCC--CCceeEEeecCC---CCcccceeEEEEeCCCCCEEEEEecC
Q 009203 298 ------GDSQISVLNLNKT--KGRACVTFLDDK---PHVKGIINSIIFLPWENPCFATGGSD 348 (540)
Q Consensus 298 ------~d~~i~vwd~~~~--~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~~~d 348 (540)
....|.-|.+... ........+... ..|. -..|+|.| ++.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgP-DG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGP-DGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECC-CCcEEEEECCC
Confidence 1234555555421 111112222221 1232 34678999 88877765544
No 496
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=83.93 E-value=0.8 Score=44.92 Aligned_cols=7 Identities=0% Similarity=0.221 Sum_probs=3.2
Q ss_pred eEEEEEC
Q 009203 441 QLRLYDI 447 (540)
Q Consensus 441 ~v~i~d~ 447 (540)
.|.+|+-
T Consensus 680 vvVVWNs 686 (907)
T KOG2264|consen 680 VVVVWNS 686 (907)
T ss_pred EEEEeCC
Confidence 3444543
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.82 E-value=5.5 Score=24.08 Aligned_cols=32 Identities=3% Similarity=0.032 Sum_probs=22.1
Q ss_pred cCCCEEEEEe-CCCeEEEEECCCCCeeeeeccC
Q 009203 384 QQKQIVLSAG-ADKRIIGFDAGVGRADFKHQIE 415 (540)
Q Consensus 384 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 415 (540)
|+++.|+++. .++.|.++|..+++.+......
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 4667666654 5789999999887765554443
No 498
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.17 E-value=29 Score=38.70 Aligned_cols=32 Identities=16% Similarity=0.394 Sum_probs=26.5
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCC
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS 255 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~ 255 (540)
......++|+|. ..++|.|...|.|+++....
T Consensus 35 ~~~~~~~afD~~-q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPT-QGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccc-cceEEEEEecccEEEecccc
Confidence 345678889995 88999999999999997654
No 499
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=83.17 E-value=8.9 Score=29.91 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=16.4
Q ss_pred HhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHH
Q 009203 36 IEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQS 69 (540)
Q Consensus 36 i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 69 (540)
-.+..+++++|+++++.++.++.....+++.+..
T Consensus 83 k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 83 KAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555555555444443
No 500
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.16 E-value=61 Score=36.28 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=25.4
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecC
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN 308 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~ 308 (540)
.....++|+|.-.+++.+ ..+|.|+++-..
T Consensus 36 ~~~~~~afD~~q~llai~----t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIG----TRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEE----EecccEEEeccc
Confidence 345678999999999999 999999999655
Done!