Query 009203
Match_columns 540
No_of_seqs 756 out of 4067
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 21:09:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 4.5E-46 1.5E-50 387.9 45.1 367 147-540 51-565 (611)
2 1vyh_C Platelet-activating fac 100.0 1.2E-46 4E-51 372.8 38.0 289 218-540 103-409 (410)
3 3ow8_A WD repeat-containing pr 100.0 1.3E-45 4.4E-50 352.7 38.7 288 219-540 28-319 (321)
4 1nr0_A Actin interacting prote 100.0 1.7E-45 5.9E-50 383.5 42.6 343 149-540 141-609 (611)
5 1got_B GT-beta; complex (GTP-b 100.0 3.2E-45 1.1E-49 353.4 37.6 289 218-539 50-340 (340)
6 2pbi_B Guanine nucleotide-bind 100.0 2.6E-44 8.8E-49 348.8 37.1 290 218-539 59-354 (354)
7 4g56_B MGC81050 protein; prote 100.0 8.7E-45 3E-49 352.3 33.6 307 204-540 22-341 (357)
8 3iz6_a 40S ribosomal protein R 100.0 3.5E-45 1.2E-49 358.7 30.7 302 218-540 61-373 (380)
9 2ynn_A Coatomer subunit beta'; 100.0 6.2E-44 2.1E-48 338.8 36.9 289 217-540 7-300 (304)
10 2ymu_A WD-40 repeat protein; u 100.0 2.7E-43 9.3E-48 365.6 43.9 350 146-539 212-577 (577)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.5E-43 1.2E-47 339.8 35.4 303 218-540 10-333 (345)
12 1vyh_C Platelet-activating fac 100.0 4.6E-43 1.6E-47 347.1 37.0 282 150-497 103-410 (410)
13 4gqb_B Methylosome protein 50; 100.0 7.3E-43 2.5E-47 336.1 36.7 294 219-540 26-329 (344)
14 2xzm_R RACK1; ribosome, transl 100.0 4.2E-42 1.4E-46 332.1 38.9 297 217-540 15-338 (343)
15 1got_B GT-beta; complex (GTP-b 100.0 1.3E-41 4.4E-46 328.2 41.2 285 148-495 48-340 (340)
16 4ery_A WD repeat-containing pr 100.0 1.6E-41 5.5E-46 323.7 40.5 286 218-540 18-310 (312)
17 3frx_A Guanine nucleotide-bind 100.0 5.7E-42 2E-46 327.5 37.4 289 217-540 11-315 (319)
18 2ymu_A WD-40 repeat protein; u 100.0 7.6E-41 2.6E-45 347.2 45.0 349 148-540 173-537 (577)
19 1erj_A Transcriptional repress 100.0 1.3E-41 4.4E-46 335.0 36.6 296 221-540 62-387 (393)
20 2hes_X YDR267CP; beta-propelle 100.0 3.1E-41 1.1E-45 324.0 36.0 305 218-540 9-326 (330)
21 2pbi_B Guanine nucleotide-bind 100.0 1.2E-40 4E-45 323.0 39.9 290 147-495 56-354 (354)
22 3iz6_a 40S ribosomal protein R 100.0 2.5E-41 8.7E-46 331.3 35.1 302 147-498 58-375 (380)
23 3ow8_A WD repeat-containing pr 100.0 1.4E-40 4.7E-45 317.8 38.2 287 149-497 26-320 (321)
24 1gxr_A ESG1, transducin-like e 100.0 5.4E-40 1.8E-44 316.4 39.9 288 220-540 48-335 (337)
25 3frx_A Guanine nucleotide-bind 100.0 5.9E-40 2E-44 313.5 37.8 292 148-498 10-317 (319)
26 4aow_A Guanine nucleotide-bind 100.0 1.3E-39 4.3E-44 314.4 39.8 292 217-540 32-335 (340)
27 4gqb_B Methylosome protein 50; 100.0 5.9E-40 2E-44 315.8 37.0 250 220-498 79-331 (344)
28 3fm0_A Protein CIAO1; WDR39,SG 100.0 4E-40 1.4E-44 318.4 35.5 298 147-498 7-335 (345)
29 1sq9_A Antiviral protein SKI8; 100.0 4.8E-40 1.6E-44 324.6 34.2 295 217-540 10-393 (397)
30 1r5m_A SIR4-interacting protei 100.0 9.8E-40 3.4E-44 325.1 36.6 318 153-540 43-423 (425)
31 3ei3_B DNA damage-binding prot 100.0 8.1E-40 2.8E-44 321.4 35.3 294 218-540 68-380 (383)
32 2ynn_A Coatomer subunit beta'; 100.0 3.9E-39 1.3E-43 305.7 38.0 287 148-498 6-302 (304)
33 2pm9_A Protein WEB1, protein t 100.0 6.8E-41 2.3E-45 332.8 26.9 314 205-540 42-412 (416)
34 3i2n_A WD repeat-containing pr 100.0 3.7E-40 1.3E-44 320.4 30.5 302 218-540 13-351 (357)
35 3dm0_A Maltose-binding peripla 100.0 2.1E-39 7E-44 343.3 37.2 291 218-540 377-691 (694)
36 3zwl_B Eukaryotic translation 100.0 1.2E-38 4E-43 311.0 39.2 288 219-540 28-344 (369)
37 3k26_A Polycomb protein EED; W 100.0 6.3E-40 2.2E-44 319.7 29.1 300 218-540 13-364 (366)
38 2xzm_R RACK1; ribosome, transl 100.0 1.3E-38 4.3E-43 307.7 37.7 298 148-498 14-340 (343)
39 2hes_X YDR267CP; beta-propelle 100.0 4.9E-39 1.7E-43 308.7 34.2 294 148-498 7-328 (330)
40 4g56_B MGC81050 protein; prote 100.0 1.1E-38 3.7E-43 309.5 36.4 286 153-498 40-343 (357)
41 2oaj_A Protein SNI1; WD40 repe 100.0 4.8E-39 1.7E-43 346.9 37.5 371 152-540 14-603 (902)
42 4e54_B DNA damage-binding prot 100.0 3.8E-39 1.3E-43 321.9 33.6 294 219-540 115-428 (435)
43 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-38 5.3E-43 358.8 41.9 371 144-540 646-1156(1249)
44 1k8k_C P40, ARP2/3 complex 41 100.0 7.5E-39 2.6E-43 313.0 32.9 292 219-540 4-359 (372)
45 1pgu_A Actin interacting prote 100.0 9.3E-38 3.2E-42 326.4 43.3 364 146-540 54-612 (615)
46 2pm9_A Protein WEB1, protein t 100.0 2.9E-39 9.8E-44 321.1 28.9 294 222-540 11-335 (416)
47 4ery_A WD repeat-containing pr 100.0 1.5E-37 5.1E-42 296.2 39.0 286 148-497 16-311 (312)
48 4gga_A P55CDC, cell division c 100.0 9.4E-38 3.2E-42 310.4 39.1 279 226-540 108-393 (420)
49 3dwl_C Actin-related protein 2 100.0 1.1E-39 3.9E-44 319.6 24.0 296 219-540 7-377 (377)
50 4h5i_A Guanine nucleotide-exch 100.0 9.9E-39 3.4E-43 310.6 30.1 298 224-540 15-341 (365)
51 3odt_A Protein DOA1; ubiquitin 100.0 4E-38 1.4E-42 300.1 33.6 282 217-540 12-294 (313)
52 3gre_A Serine/threonine-protei 100.0 1E-38 3.4E-43 319.4 29.2 302 220-539 60-437 (437)
53 4aow_A Guanine nucleotide-bind 100.0 2.8E-37 9.4E-42 298.0 37.8 294 149-499 32-338 (340)
54 3vl1_A 26S proteasome regulato 100.0 6.1E-38 2.1E-42 312.0 34.2 312 200-540 70-417 (420)
55 4ggc_A P55CDC, cell division c 100.0 6.6E-37 2.3E-41 292.4 39.2 279 226-540 28-313 (318)
56 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-37 4.9E-42 350.9 39.4 336 149-540 609-1032(1249)
57 2pm7_B Protein transport prote 100.0 2.3E-37 7.8E-42 292.5 33.9 268 218-540 4-283 (297)
58 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-38 7.2E-43 320.2 28.2 314 200-540 175-515 (524)
59 1pgu_A Actin interacting prote 100.0 1.5E-36 5E-41 317.3 43.1 354 153-540 16-570 (615)
60 3dm0_A Maltose-binding peripla 100.0 3.6E-37 1.2E-41 326.1 37.3 293 149-497 376-692 (694)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-36 9.9E-41 302.2 41.0 295 200-540 131-440 (445)
62 3v7d_B Cell division control p 100.0 3.6E-36 1.2E-40 303.3 40.4 297 200-538 134-459 (464)
63 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-36 6.1E-41 327.0 40.5 319 200-540 31-517 (902)
64 1erj_A Transcriptional repress 100.0 1.1E-36 3.7E-41 299.8 35.5 245 224-498 124-389 (393)
65 3vl1_A 26S proteasome regulato 100.0 1.2E-37 4.2E-42 309.8 28.7 280 224-540 57-363 (420)
66 4aez_A CDC20, WD repeat-contai 100.0 1.3E-36 4.3E-41 300.4 34.6 283 221-540 89-378 (401)
67 3mkq_A Coatomer beta'-subunit; 100.0 4.1E-36 1.4E-40 324.5 39.7 328 148-540 6-384 (814)
68 4a11_B DNA excision repair pro 100.0 2.2E-36 7.4E-41 299.3 33.9 300 217-540 37-363 (408)
69 1r5m_A SIR4-interacting protei 100.0 1.6E-36 5.6E-41 301.8 33.0 289 220-540 42-359 (425)
70 4e54_B DNA damage-binding prot 100.0 7.9E-37 2.7E-41 305.1 30.5 293 147-498 111-430 (435)
71 1gxr_A ESG1, transducin-like e 100.0 2E-36 6.8E-41 291.4 32.2 286 222-540 8-294 (337)
72 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-36 6.2E-41 327.3 34.3 288 217-540 7-300 (814)
73 3zwl_B Eukaryotic translation 100.0 3E-35 1E-39 286.9 38.7 290 149-498 26-346 (369)
74 3bg1_A Protein SEC13 homolog; 100.0 5.5E-37 1.9E-41 292.5 25.6 273 217-540 7-291 (316)
75 4gga_A P55CDC, cell division c 100.0 2.2E-35 7.5E-40 293.3 38.1 284 201-519 119-414 (420)
76 3dw8_B Serine/threonine-protei 100.0 1.8E-36 6.1E-41 304.0 29.3 290 221-539 26-443 (447)
77 1yfq_A Cell cycle arrest prote 100.0 9.6E-36 3.3E-40 287.5 32.2 285 218-534 6-315 (342)
78 3mmy_A MRNA export factor; mRN 100.0 8.4E-36 2.9E-40 290.7 31.3 292 217-539 33-343 (368)
79 1p22_A F-BOX/WD-repeat protein 100.0 2.6E-35 8.8E-40 294.3 32.7 275 220-540 130-412 (435)
80 4aez_A CDC20, WD repeat-contai 100.0 1.3E-34 4.4E-39 286.0 37.2 264 201-498 106-380 (401)
81 3ei3_B DNA damage-binding prot 100.0 9.6E-35 3.3E-39 285.2 35.0 290 148-498 66-382 (383)
82 3v7d_B Cell division control p 100.0 1.3E-34 4.4E-39 291.9 36.5 283 218-540 116-419 (464)
83 1sq9_A Antiviral protein SKI8; 100.0 2.2E-34 7.4E-39 284.0 35.3 294 149-498 10-395 (397)
84 4a11_B DNA excision repair pro 100.0 2.8E-34 9.5E-39 284.1 36.0 325 149-540 37-403 (408)
85 1k8k_C P40, ARP2/3 complex 41 100.0 3.4E-34 1.2E-38 279.9 35.9 298 152-498 5-361 (372)
86 3jrp_A Fusion protein of prote 100.0 6.2E-35 2.1E-39 285.8 30.7 256 217-540 5-285 (379)
87 3i2n_A WD repeat-containing pr 100.0 6.9E-35 2.4E-39 283.1 30.5 294 151-498 14-353 (357)
88 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-34 4.5E-39 279.8 31.0 302 217-540 5-335 (351)
89 3k26_A Polycomb protein EED; W 100.0 1.5E-34 5.3E-39 281.6 30.8 296 151-497 14-365 (366)
90 2aq5_A Coronin-1A; WD40 repeat 100.0 6.8E-35 2.3E-39 288.2 28.0 289 225-540 36-340 (402)
91 3dwl_C Actin-related protein 2 100.0 1.4E-34 4.6E-39 283.5 26.3 277 200-496 25-377 (377)
92 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.3E-33 1.1E-37 280.0 36.9 272 218-540 113-389 (445)
93 4h5i_A Guanine nucleotide-exch 100.0 4.8E-34 1.7E-38 277.5 29.4 254 219-498 69-343 (365)
94 2j04_B YDR362CP, TAU91; beta p 100.0 3.4E-35 1.1E-39 296.8 21.1 261 236-526 173-458 (524)
95 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-32 4.1E-37 262.1 37.3 281 147-498 10-296 (313)
96 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-34 6.1E-39 283.9 23.2 314 156-530 16-349 (588)
97 4ggc_A P55CDC, cell division c 100.0 1.8E-32 6.2E-37 261.6 36.1 267 201-498 39-315 (318)
98 3gre_A Serine/threonine-protei 100.0 2.4E-33 8.3E-38 280.3 30.2 301 146-495 53-437 (437)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 1.8E-33 6.3E-38 277.9 26.5 279 197-498 46-342 (402)
100 2xyi_A Probable histone-bindin 100.0 2.8E-32 9.6E-37 271.6 32.9 254 271-540 125-408 (430)
101 2pm7_B Protein transport prote 100.0 2.7E-32 9.4E-37 257.6 30.8 250 148-449 2-285 (297)
102 3jro_A Fusion protein of prote 100.0 3.5E-33 1.2E-37 297.2 27.0 256 217-540 3-283 (753)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.3E-32 2.5E-36 270.5 34.0 298 224-540 5-389 (450)
104 3dw8_B Serine/threonine-protei 100.0 7.6E-32 2.6E-36 270.2 33.4 298 153-497 26-445 (447)
105 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-31 6E-36 258.6 33.4 276 219-540 15-334 (355)
106 3bg1_A Protein SEC13 homolog; 100.0 3.1E-32 1.1E-36 259.6 26.8 250 150-449 8-293 (316)
107 1yfq_A Cell cycle arrest prote 100.0 5.9E-32 2E-36 260.9 28.4 245 271-540 8-280 (342)
108 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-31 4.2E-36 267.7 31.3 262 200-498 145-414 (435)
109 2xyi_A Probable histone-bindin 100.0 2.1E-31 7E-36 265.4 31.2 261 219-498 124-410 (430)
110 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-32 6.1E-37 269.7 22.6 263 221-540 13-295 (588)
111 3f3f_A Nucleoporin SEH1; struc 100.0 3.4E-31 1.2E-35 255.7 29.9 297 150-498 6-337 (351)
112 3lrv_A PRE-mRNA-splicing facto 100.0 3.8E-31 1.3E-35 255.4 28.7 271 230-538 43-329 (343)
113 3bws_A Protein LP49; two-domai 100.0 1.6E-30 5.5E-35 259.5 32.2 283 224-540 123-430 (433)
114 3mmy_A MRNA export factor; mRN 100.0 1.2E-30 4.1E-35 254.1 30.3 287 147-498 31-346 (368)
115 3jrp_A Fusion protein of prote 100.0 1.1E-30 3.6E-35 255.7 28.2 253 148-451 4-289 (379)
116 1l0q_A Surface layer protein; 100.0 2.2E-29 7.4E-34 247.8 36.2 300 200-540 4-340 (391)
117 4gq1_A NUP37; propeller, trans 100.0 2.8E-31 9.6E-36 261.0 20.8 250 273-539 88-386 (393)
118 1l0q_A Surface layer protein; 100.0 3.7E-29 1.3E-33 246.1 34.9 265 236-540 2-273 (391)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.3E-29 8E-34 252.3 31.5 245 275-540 5-337 (450)
120 3vu4_A KMHSV2; beta-propeller 100.0 2.3E-29 7.8E-34 243.8 29.1 239 271-540 16-269 (355)
121 3jro_A Fusion protein of prote 100.0 3.6E-30 1.2E-34 274.0 24.9 252 149-451 3-287 (753)
122 4gq1_A NUP37; propeller, trans 100.0 4.7E-30 1.6E-34 252.2 23.3 255 220-497 86-388 (393)
123 2w18_A PALB2, fancn, partner a 100.0 5.9E-29 2E-33 229.9 27.6 284 226-540 42-355 (356)
124 3lrv_A PRE-mRNA-splicing facto 100.0 5.6E-29 1.9E-33 240.1 25.8 258 200-497 50-332 (343)
125 1nir_A Nitrite reductase; hemo 100.0 2.8E-27 9.6E-32 240.9 32.7 313 200-540 151-512 (543)
126 3bws_A Protein LP49; two-domai 100.0 9.9E-27 3.4E-31 232.0 33.8 262 200-498 136-432 (433)
127 2w18_A PALB2, fancn, partner a 100.0 1.5E-27 5.2E-32 220.5 23.1 259 207-496 62-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.3E-26 4.4E-31 229.0 27.6 274 209-524 94-410 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.9E-27 2E-31 231.5 24.3 282 223-540 62-385 (415)
130 1ri6_A Putative isomerase YBHE 99.9 2.3E-24 7.8E-29 207.6 30.3 283 236-540 5-306 (343)
131 2ecf_A Dipeptidyl peptidase IV 99.9 2.3E-24 7.9E-29 230.1 32.9 279 225-539 110-456 (741)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.7E-24 5.8E-29 231.1 27.4 292 223-540 36-411 (741)
133 2ojh_A Uncharacterized protein 99.9 3.3E-24 1.1E-28 201.6 24.3 257 241-533 17-293 (297)
134 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-23 5E-28 222.5 30.8 279 224-540 82-433 (706)
135 1nir_A Nitrite reductase; hemo 99.9 1.1E-23 3.8E-28 214.4 28.6 280 230-540 144-456 (543)
136 3u4y_A Uncharacterized protein 99.9 2.7E-23 9.2E-28 199.2 29.8 279 229-540 3-302 (331)
137 1k32_A Tricorn protease; prote 99.9 2.6E-23 8.9E-28 229.6 32.8 298 208-540 80-459 (1045)
138 1xfd_A DIP, dipeptidyl aminope 99.9 5.6E-24 1.9E-28 226.5 24.1 285 224-540 17-391 (723)
139 3u4y_A Uncharacterized protein 99.9 2.6E-22 8.9E-27 192.3 32.9 272 201-498 13-304 (331)
140 1xfd_A DIP, dipeptidyl aminope 99.9 8.5E-23 2.9E-27 217.3 32.2 299 205-530 34-428 (723)
141 1pby_B Quinohemoprotein amine 99.9 2.4E-23 8.1E-28 199.9 25.3 269 237-540 2-308 (337)
142 3vgz_A Uncharacterized protein 99.9 9.3E-22 3.2E-26 190.2 34.7 274 223-532 40-334 (353)
143 1ri6_A Putative isomerase YBHE 99.9 3.7E-22 1.3E-26 192.1 30.4 298 202-524 9-335 (343)
144 1k32_A Tricorn protease; prote 99.9 3.3E-22 1.1E-26 220.8 29.9 280 218-539 198-499 (1045)
145 1jmx_B Amine dehydrogenase; ox 99.9 4.9E-22 1.7E-26 191.7 27.2 271 228-540 4-323 (349)
146 2ojh_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 188.0 25.1 254 203-489 17-293 (297)
147 3hfq_A Uncharacterized protein 99.9 1.4E-21 4.9E-26 188.5 29.6 281 245-539 15-314 (347)
148 3o4h_A Acylamino-acid-releasin 99.9 1.9E-22 6.5E-27 208.9 22.2 271 222-539 20-312 (582)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 4.2E-21 1.4E-25 190.1 30.5 320 208-540 23-403 (434)
150 3scy_A Hypothetical bacterial 99.9 7.4E-20 2.5E-24 177.5 33.8 286 236-539 13-334 (361)
151 2z3z_A Dipeptidyl aminopeptida 99.9 3E-21 1E-25 204.8 26.1 284 226-539 28-388 (706)
152 1pby_B Quinohemoprotein amine 99.9 1E-20 3.4E-25 181.5 27.1 276 201-510 4-320 (337)
153 3hfq_A Uncharacterized protein 99.9 2.4E-20 8.2E-25 179.9 28.7 259 220-498 36-317 (347)
154 3scy_A Hypothetical bacterial 99.9 1.5E-19 5.1E-24 175.4 31.1 295 206-520 25-360 (361)
155 1z68_A Fibroblast activation p 99.9 5.5E-21 1.9E-25 203.2 21.1 281 227-540 19-389 (719)
156 1z68_A Fibroblast activation p 99.9 3E-20 1E-24 197.5 25.8 304 206-540 34-441 (719)
157 3vgz_A Uncharacterized protein 99.9 2.1E-19 7.2E-24 173.6 28.0 244 276-540 42-301 (353)
158 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.5E-19 5E-24 175.6 26.0 250 275-540 40-339 (365)
159 3pe7_A Oligogalacturonate lyas 99.9 1.3E-19 4.5E-24 177.6 26.0 284 220-539 27-379 (388)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 9.4E-20 3.2E-24 180.5 22.4 215 275-499 37-279 (434)
161 3o4h_A Acylamino-acid-releasin 99.8 6.3E-20 2.2E-24 189.9 19.7 233 274-540 21-274 (582)
162 4a5s_A Dipeptidyl peptidase 4 99.8 2.5E-18 8.4E-23 182.9 26.2 275 223-530 16-381 (740)
163 3azo_A Aminopeptidase; POP fam 99.8 1E-17 3.5E-22 176.2 30.2 293 218-538 18-363 (662)
164 1jmx_B Amine dehydrogenase; ox 99.8 5.8E-18 2E-22 163.1 23.9 277 200-509 13-334 (349)
165 1q7f_A NHL, brain tumor CG1071 99.8 8.6E-17 2.9E-21 150.4 30.4 243 271-540 26-278 (286)
166 2oiz_A Aromatic amine dehydrog 99.8 3E-17 1E-21 158.5 27.1 289 206-524 29-360 (361)
167 3fvz_A Peptidyl-glycine alpha- 99.8 7.5E-17 2.6E-21 154.0 29.4 243 274-540 23-320 (329)
168 2dg1_A DRP35, lactonase; beta 99.8 3.5E-17 1.2E-21 156.7 26.5 277 224-532 6-300 (333)
169 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-17 4.1E-22 162.1 22.6 253 222-498 38-341 (365)
170 3c5m_A Oligogalacturonate lyas 99.8 3.7E-18 1.3E-22 167.6 18.2 275 223-539 35-379 (396)
171 1q7f_A NHL, brain tumor CG1071 99.8 5E-16 1.7E-20 145.2 31.5 249 220-498 26-280 (286)
172 4a5s_A Dipeptidyl peptidase 4 99.8 1.3E-17 4.5E-22 177.2 22.1 244 276-539 18-350 (740)
173 2oiz_A Aromatic amine dehydrog 99.8 6.5E-17 2.2E-21 156.2 24.2 271 244-540 29-332 (361)
174 3fvz_A Peptidyl-glycine alpha- 99.8 1.9E-15 6.5E-20 144.2 32.9 250 223-498 23-322 (329)
175 3pe7_A Oligogalacturonate lyas 99.7 1.6E-16 5.4E-21 155.5 23.0 237 277-540 38-327 (388)
176 2z2n_A Virginiamycin B lyase; 99.7 4.1E-14 1.4E-18 132.8 36.4 279 220-539 11-292 (299)
177 2gop_A Trilobed protease; beta 99.7 2.9E-15 1E-19 144.1 27.3 258 224-539 15-328 (347)
178 3azo_A Aminopeptidase; POP fam 99.7 3.9E-16 1.3E-20 164.1 22.4 254 219-498 63-369 (662)
179 1qks_A Cytochrome CD1 nitrite 99.7 2.2E-14 7.4E-19 145.6 33.6 315 201-539 170-535 (567)
180 2bkl_A Prolyl endopeptidase; m 99.7 1.5E-15 5E-20 160.3 23.4 288 233-540 77-395 (695)
181 3dsm_A Uncharacterized protein 99.7 1.4E-14 4.8E-19 137.9 28.0 264 244-540 15-300 (328)
182 3e5z_A Putative gluconolactona 99.7 1.4E-14 4.8E-19 136.0 27.2 230 274-536 27-281 (296)
183 2xdw_A Prolyl endopeptidase; a 99.7 4.8E-15 1.6E-19 156.9 26.7 250 271-540 121-412 (710)
184 3c5m_A Oligogalacturonate lyas 99.7 9.9E-16 3.4E-20 150.2 19.8 240 273-540 34-327 (396)
185 3e5z_A Putative gluconolactona 99.7 1.5E-14 5.1E-19 135.8 26.6 238 220-498 24-286 (296)
186 2dg1_A DRP35, lactonase; beta 99.7 4E-14 1.4E-18 135.3 29.6 254 206-488 25-300 (333)
187 2xdw_A Prolyl endopeptidase; a 99.7 2.1E-14 7.3E-19 151.9 30.1 257 211-499 112-415 (710)
188 1rwi_B Serine/threonine-protei 99.7 4.9E-14 1.7E-18 130.3 27.9 236 276-540 25-262 (270)
189 1rwi_B Serine/threonine-protei 99.7 1.1E-13 3.7E-18 128.0 29.6 238 225-498 25-264 (270)
190 2bkl_A Prolyl endopeptidase; m 99.7 9.5E-15 3.3E-19 154.1 24.7 253 212-499 109-398 (695)
191 2qc5_A Streptogramin B lactona 99.7 1.6E-12 5.6E-17 121.9 36.3 277 222-539 18-297 (300)
192 3no2_A Uncharacterized protein 99.6 1.3E-13 4.6E-18 127.3 26.5 244 236-508 5-260 (276)
193 3dsm_A Uncharacterized protein 99.6 1.8E-13 6.3E-18 130.2 28.2 275 205-519 14-319 (328)
194 1yr2_A Prolyl oligopeptidase; 99.6 8.3E-14 2.8E-18 148.0 25.8 285 232-540 115-439 (741)
195 1qks_A Cytochrome CD1 nitrite 99.6 1.9E-12 6.6E-17 131.3 31.9 280 235-540 166-475 (567)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-12 3.6E-17 124.2 27.3 245 275-540 18-297 (314)
197 2z2n_A Virginiamycin B lyase; 99.6 9.9E-12 3.4E-16 116.4 33.2 236 274-539 14-252 (299)
198 2gop_A Trilobed protease; beta 99.6 1.5E-13 5.1E-18 132.1 20.4 220 276-538 16-288 (347)
199 2mad_H Methylamine dehydrogena 99.5 2.3E-11 8E-16 117.3 32.7 277 232-540 29-348 (373)
200 3no2_A Uncharacterized protein 99.5 2.5E-12 8.6E-17 118.7 24.7 214 285-530 4-231 (276)
201 1yr2_A Prolyl oligopeptidase; 99.5 2.4E-12 8.4E-17 136.7 26.3 263 210-499 149-442 (741)
202 3hrp_A Uncharacterized protein 99.5 8.6E-12 2.9E-16 122.1 26.9 243 275-540 131-408 (409)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-11 4.4E-16 116.7 27.3 243 224-498 18-299 (314)
204 2qc5_A Streptogramin B lactona 99.5 9.5E-11 3.3E-15 109.7 32.9 236 274-539 19-257 (300)
205 3g4e_A Regucalcin; six bladed 99.5 3.3E-11 1.1E-15 112.9 29.5 227 277-530 15-260 (297)
206 3sjl_D Methylamine dehydrogena 99.5 8.6E-12 2.9E-16 118.6 24.5 281 230-540 39-361 (386)
207 3sjl_D Methylamine dehydrogena 99.5 2.5E-11 8.4E-16 115.5 26.0 265 228-522 82-384 (386)
208 2mad_H Methylamine dehydrogena 99.5 2E-10 6.8E-15 110.8 32.1 248 228-506 70-356 (373)
209 3hrp_A Uncharacterized protein 99.5 8.3E-11 2.8E-15 115.1 29.5 248 223-497 130-409 (409)
210 3c75_H MADH, methylamine dehyd 99.4 3E-11 1E-15 117.1 23.6 266 246-540 99-400 (426)
211 3dr2_A Exported gluconolactona 99.4 4.7E-11 1.6E-15 112.3 24.4 230 276-537 46-302 (305)
212 2ghs_A AGR_C_1268P; regucalcin 99.4 2.7E-10 9.3E-15 108.1 29.1 225 278-531 52-291 (326)
213 2qe8_A Uncharacterized protein 99.4 1.5E-11 5.1E-16 117.8 20.3 277 224-533 17-312 (343)
214 1xip_A Nucleoporin NUP159; bet 99.4 6.3E-12 2.2E-16 120.1 16.9 175 328-530 39-232 (388)
215 3g4e_A Regucalcin; six bladed 99.4 4.7E-10 1.6E-14 105.0 29.5 233 221-487 10-261 (297)
216 3iuj_A Prolyl endopeptidase; h 99.4 4.2E-11 1.4E-15 126.0 24.3 254 211-498 116-405 (693)
217 2ghs_A AGR_C_1268P; regucalcin 99.3 1.9E-09 6.5E-14 102.2 30.1 224 225-487 50-291 (326)
218 3iuj_A Prolyl endopeptidase; h 99.3 3.8E-10 1.3E-14 118.7 27.7 245 272-540 126-403 (693)
219 3dr2_A Exported gluconolactona 99.3 1.5E-10 5.2E-15 108.8 22.1 228 223-489 44-298 (305)
220 3c75_H MADH, methylamine dehyd 99.3 5.9E-10 2E-14 108.1 25.3 250 228-507 122-409 (426)
221 1xip_A Nucleoporin NUP159; bet 99.3 1.9E-10 6.5E-15 109.9 18.2 181 276-485 39-231 (388)
222 2ece_A 462AA long hypothetical 99.2 9.1E-09 3.1E-13 98.5 25.7 240 281-530 88-399 (462)
223 1kb0_A Quinohemoprotein alcoho 99.2 1.6E-09 5.6E-14 112.9 21.9 275 236-528 128-536 (677)
224 1mda_H Methylamine dehydrogena 99.2 1.4E-09 5E-14 103.6 19.4 268 237-540 33-344 (368)
225 2qe8_A Uncharacterized protein 99.2 7.9E-10 2.7E-14 105.7 17.7 232 275-540 17-276 (343)
226 1yiq_A Quinohemoprotein alcoho 99.2 3.3E-09 1.1E-13 110.8 23.6 291 237-540 71-503 (689)
227 1yiq_A Quinohemoprotein alcoho 99.2 3.2E-09 1.1E-13 111.0 23.2 276 236-530 121-537 (689)
228 1kb0_A Quinohemoprotein alcoho 99.2 3E-09 1E-13 110.9 22.6 289 238-540 79-505 (677)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.1 4.7E-08 1.6E-12 94.7 28.4 266 236-539 103-375 (376)
230 1mda_H Methylamine dehydrogena 99.1 3E-09 1E-13 101.4 19.2 255 228-521 69-366 (368)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.1 4.4E-08 1.5E-12 94.9 27.1 271 237-539 54-334 (376)
232 1fwx_A Nitrous oxide reductase 99.1 1.5E-08 5.2E-13 100.5 20.9 229 285-531 100-407 (595)
233 2hz6_A Endoplasmic reticulum t 99.0 1.6E-10 5.4E-15 111.6 6.1 188 236-454 9-197 (369)
234 2ece_A 462AA long hypothetical 99.0 6.6E-08 2.2E-12 92.6 21.6 243 233-486 93-399 (462)
235 2hz6_A Endoplasmic reticulum t 99.0 2.7E-10 9.2E-15 110.0 4.7 204 285-524 8-216 (369)
236 2fp8_A Strictosidine synthase; 98.9 4.8E-07 1.6E-11 85.5 26.2 241 277-540 21-311 (322)
237 1npe_A Nidogen, entactin; glyc 98.9 3.3E-06 1.1E-10 77.2 30.8 224 224-480 36-263 (267)
238 1npe_A Nidogen, entactin; glyc 98.9 4E-06 1.4E-10 76.6 31.3 252 238-524 3-263 (267)
239 2p4o_A Hypothetical protein; p 98.9 2.1E-06 7.1E-11 80.4 28.6 225 276-531 33-277 (306)
240 3hxj_A Pyrrolo-quinoline quino 98.9 1.1E-07 3.8E-12 90.0 19.7 262 223-539 59-321 (330)
241 2iwa_A Glutamine cyclotransfer 98.9 7.8E-07 2.7E-11 80.0 23.4 201 225-450 22-238 (266)
242 1kv9_A Type II quinohemoprotei 98.9 1.9E-07 6.6E-12 97.2 22.4 289 238-540 68-486 (668)
243 1k3i_A Galactose oxidase precu 98.8 7.9E-07 2.7E-11 92.7 25.9 278 228-531 190-530 (656)
244 1kv9_A Type II quinohemoprotei 98.8 4.6E-07 1.6E-11 94.4 23.7 274 237-530 118-520 (668)
245 1fwx_A Nitrous oxide reductase 98.8 6.6E-08 2.3E-12 96.0 16.2 241 233-498 99-431 (595)
246 2iwa_A Glutamine cyclotransfer 98.8 1.6E-06 5.3E-11 78.1 22.4 195 328-539 22-234 (266)
247 4a2l_A BT_4663, two-component 98.7 4.8E-05 1.6E-09 81.3 36.1 284 223-539 262-568 (795)
248 4a2l_A BT_4663, two-component 98.7 6.7E-05 2.3E-09 80.2 37.1 285 223-538 309-610 (795)
249 3nok_A Glutaminyl cyclase; bet 98.7 6.1E-06 2.1E-10 73.2 21.8 184 226-437 57-254 (268)
250 3nol_A Glutamine cyclotransfer 98.6 8.2E-06 2.8E-10 72.4 21.4 185 226-437 45-244 (262)
251 2fp8_A Strictosidine synthase; 98.6 1.5E-05 5E-10 75.2 24.7 249 224-498 19-313 (322)
252 3nol_A Glutamine cyclotransfer 98.6 8.7E-06 3E-10 72.3 21.0 186 327-531 43-244 (262)
253 3nok_A Glutaminyl cyclase; bet 98.6 1.1E-05 3.8E-10 71.5 21.5 186 327-530 55-253 (268)
254 3qqz_A Putative uncharacterize 98.6 9.9E-05 3.4E-09 65.9 28.0 211 219-447 22-251 (255)
255 2ad6_A Methanol dehydrogenase 98.6 5.4E-06 1.8E-10 84.5 22.3 267 237-528 116-523 (571)
256 1w6s_A Methanol dehydrogenase 98.6 3.1E-05 1.1E-09 78.9 27.4 208 238-454 64-347 (599)
257 2p4o_A Hypothetical protein; p 98.6 3.7E-05 1.3E-09 71.7 25.9 234 224-489 32-279 (306)
258 3v64_C Agrin; beta propeller, 98.6 0.00022 7.6E-09 67.7 31.5 239 224-498 34-275 (349)
259 2xe4_A Oligopeptidase B; hydro 98.6 7E-05 2.4E-09 79.2 30.5 217 211-447 160-398 (751)
260 3tc9_A Hypothetical hydrolase; 98.5 8.2E-05 2.8E-09 72.9 28.5 252 224-497 137-429 (430)
261 2ad6_A Methanol dehydrogenase 98.5 1.8E-05 6E-10 80.7 24.5 288 238-540 64-492 (571)
262 3hxj_A Pyrrolo-quinoline quino 98.5 8.3E-06 2.8E-10 77.0 20.7 215 238-498 109-324 (330)
263 3mbr_X Glutamine cyclotransfer 98.5 5.1E-05 1.7E-09 66.7 23.2 187 224-437 21-223 (243)
264 1flg_A Protein (quinoprotein e 98.5 2.7E-05 9.4E-10 79.3 24.6 275 237-529 118-547 (582)
265 4hw6_A Hypothetical protein, I 98.5 6.4E-05 2.2E-09 73.7 26.3 246 224-497 139-432 (433)
266 3v65_B Low-density lipoprotein 98.5 0.00029 1E-08 67.9 30.7 238 225-498 78-318 (386)
267 3v9f_A Two-component system se 98.5 0.00016 5.5E-09 77.1 31.5 281 223-533 312-603 (781)
268 1flg_A Protein (quinoprotein e 98.5 0.00013 4.4E-09 74.4 29.0 209 236-453 69-359 (582)
269 3v64_C Agrin; beta propeller, 98.5 0.00029 9.8E-09 66.9 29.5 232 278-539 37-272 (349)
270 3tc9_A Hypothetical hydrolase; 98.5 4.9E-05 1.7E-09 74.5 24.7 242 275-539 137-427 (430)
271 3mbr_X Glutamine cyclotransfer 98.5 6.5E-05 2.2E-09 66.1 22.1 187 327-531 21-223 (243)
272 1ijq_A LDL receptor, low-densi 98.4 0.00035 1.2E-08 65.4 28.7 224 298-539 8-235 (316)
273 4hw6_A Hypothetical protein, I 98.4 0.00015 5.2E-09 71.0 27.0 242 275-539 139-430 (433)
274 2xzh_A Clathrin heavy chain 1; 98.4 0.00095 3.3E-08 60.6 31.7 259 245-536 48-326 (365)
275 3v9f_A Two-component system se 98.4 0.00055 1.9E-08 72.9 33.1 288 224-539 211-521 (781)
276 3p5b_L Low density lipoprotein 98.4 0.0018 6.2E-08 62.6 33.8 232 238-498 85-320 (400)
277 3v65_B Low-density lipoprotein 98.4 0.00029 1E-08 67.9 27.8 231 279-539 81-315 (386)
278 1k3i_A Galactose oxidase precu 98.4 7.2E-06 2.5E-10 85.4 17.4 245 279-539 190-494 (656)
279 1ijq_A LDL receptor, low-densi 98.4 0.0018 6.1E-08 60.5 33.2 225 246-498 10-238 (316)
280 1w6s_A Methanol dehydrogenase 98.3 5.3E-05 1.8E-09 77.1 22.0 277 229-530 111-535 (599)
281 3qqz_A Putative uncharacterize 98.3 0.00014 4.9E-09 64.9 22.1 202 326-538 26-249 (255)
282 1bpo_A Protein (clathrin); cla 98.3 0.0021 7.3E-08 60.8 34.1 262 245-536 47-325 (494)
283 3kya_A Putative phosphatase; s 98.3 0.00071 2.4E-08 66.4 28.8 257 224-498 139-475 (496)
284 3sov_A LRP-6, low-density lipo 98.3 0.002 7E-08 60.0 31.3 224 245-498 12-238 (318)
285 2xbg_A YCF48-like protein; pho 98.3 0.0031 1.1E-07 59.2 35.5 279 223-539 35-319 (327)
286 2xe4_A Oligopeptidase B; hydro 98.3 0.00034 1.2E-08 74.0 26.4 192 328-538 175-394 (751)
287 3kya_A Putative phosphatase; s 98.2 0.00092 3.1E-08 65.7 26.3 249 276-540 140-473 (496)
288 3p5b_L Low density lipoprotein 98.2 0.002 6.8E-08 62.4 27.5 224 298-539 90-317 (400)
289 3sov_A LRP-6, low-density lipo 98.1 0.0018 6.3E-08 60.3 25.8 221 298-539 11-235 (318)
290 2p9w_A MAL S 1 allergenic prot 98.1 0.0011 3.7E-08 61.0 22.8 162 328-498 14-215 (334)
291 3m0c_C LDL receptor, low-densi 98.1 0.0095 3.3E-07 62.6 32.2 226 245-498 403-632 (791)
292 2p9w_A MAL S 1 allergenic prot 98.0 0.00046 1.6E-08 63.4 18.6 161 373-540 11-213 (334)
293 2ism_A Putative oxidoreductase 98.0 0.0052 1.8E-07 58.2 26.6 243 224-486 31-333 (352)
294 2ism_A Putative oxidoreductase 98.0 0.0035 1.2E-07 59.4 25.0 237 277-530 33-333 (352)
295 3s94_A LRP-6, low-density lipo 98.0 0.022 7.5E-07 58.3 32.7 204 223-451 39-245 (619)
296 3a9g_A Putative uncharacterize 98.0 0.013 4.4E-07 55.5 28.2 248 224-486 29-330 (354)
297 3a9g_A Putative uncharacterize 97.9 0.0064 2.2E-07 57.6 25.5 240 277-530 31-330 (354)
298 3sre_A PON1, serum paraoxonase 97.9 0.0014 4.9E-08 61.6 20.3 211 277-497 52-297 (355)
299 2g8s_A Glucose/sorbosone dehyd 97.9 0.019 6.4E-07 54.4 28.2 254 224-490 18-346 (353)
300 1n7d_A LDL receptor, low-densi 97.9 0.00018 6.2E-09 75.0 14.9 226 245-498 385-614 (699)
301 3m0c_C LDL receptor, low-densi 97.8 0.02 6.8E-07 60.2 29.7 205 222-451 422-634 (791)
302 3amr_A 3-phytase; beta-propell 97.8 0.0036 1.2E-07 58.0 21.1 190 297-507 47-271 (355)
303 4a0p_A LRP6, LRP-6, low-densit 97.8 0.04 1.4E-06 56.5 33.5 228 238-498 8-237 (628)
304 2g8s_A Glucose/sorbosone dehyd 97.8 0.015 5E-07 55.1 25.2 248 277-535 20-347 (353)
305 3das_A Putative oxidoreductase 97.7 0.033 1.1E-06 52.0 28.2 241 276-530 33-326 (347)
306 1n7d_A LDL receptor, low-densi 97.7 0.00047 1.6E-08 71.9 14.4 204 224-452 406-617 (699)
307 4a0p_A LRP6, LRP-6, low-densit 97.6 0.099 3.4E-06 53.6 41.8 200 223-449 36-237 (628)
308 1xi4_A Clathrin heavy chain; a 97.5 0.021 7.2E-07 62.4 24.4 245 246-520 48-309 (1630)
309 3amr_A 3-phytase; beta-propell 97.5 0.048 1.7E-06 50.6 23.6 196 236-449 40-263 (355)
310 3ei3_A DNA damage-binding prot 97.5 0.15 5.3E-06 56.0 31.5 75 223-308 553-635 (1158)
311 3s94_A LRP-6, low-density lipo 97.5 0.12 4E-06 53.0 36.4 288 223-539 170-507 (619)
312 1tl2_A L10, protein (tachylect 97.4 0.01 3.6E-07 50.7 16.4 184 339-535 4-203 (236)
313 2xbg_A YCF48-like protein; pho 97.4 0.084 2.9E-06 49.3 29.5 236 223-496 79-320 (327)
314 3sre_A PON1, serum paraoxonase 97.4 0.047 1.6E-06 51.2 22.3 186 329-532 52-287 (355)
315 3pbp_A Nucleoporin NUP82; beta 97.2 0.034 1.2E-06 52.7 19.3 151 338-494 31-208 (452)
316 1cru_A Protein (soluble quinop 97.2 0.2 7E-06 48.9 29.3 119 224-347 27-163 (454)
317 3das_A Putative oxidoreductase 97.1 0.18 6.2E-06 47.1 28.8 248 224-486 32-326 (347)
318 1cru_A Protein (soluble quinop 97.1 0.24 8.3E-06 48.4 29.6 113 276-394 28-163 (454)
319 2vpj_A Kelch-like protein 12; 97.0 0.18 6.3E-06 46.1 23.8 189 285-498 62-278 (301)
320 2vpj_A Kelch-like protein 12; 96.9 0.25 8.6E-06 45.2 23.9 216 300-539 31-275 (301)
321 3pbp_A Nucleoporin NUP82; beta 96.8 0.14 4.9E-06 48.5 19.6 149 383-537 29-207 (452)
322 2xn4_A Kelch-like protein 2; s 96.8 0.29 9.8E-06 44.8 23.6 215 300-540 30-274 (302)
323 3ii7_A Kelch-like protein 7; p 96.8 0.32 1.1E-05 44.6 24.9 216 299-540 23-270 (306)
324 3ei3_A DNA damage-binding prot 96.7 0.98 3.3E-05 49.8 29.0 280 227-538 330-632 (1158)
325 2uvk_A YJHT; unknown function, 96.7 0.32 1.1E-05 45.8 21.9 225 285-533 19-327 (357)
326 2xzh_A Clathrin heavy chain 1; 96.6 0.41 1.4E-05 43.7 26.0 235 228-498 71-332 (365)
327 3ii7_A Kelch-like protein 7; p 96.5 0.46 1.6E-05 43.5 25.0 228 236-499 12-273 (306)
328 1zgk_A Kelch-like ECH-associat 96.5 0.52 1.8E-05 43.2 23.3 228 285-539 24-284 (308)
329 1bpo_A Protein (clathrin); cla 96.4 0.67 2.3E-05 44.1 27.1 235 228-498 70-331 (494)
330 2xn4_A Kelch-like protein 2; s 96.4 0.54 1.9E-05 42.9 24.3 186 285-498 61-276 (302)
331 1tl2_A L10, protein (tachylect 96.3 0.09 3.1E-06 45.0 13.0 154 328-497 42-207 (236)
332 1zgk_A Kelch-like ECH-associat 96.1 0.85 2.9E-05 41.8 23.8 175 300-498 90-287 (308)
333 4asc_A Kelch repeat and BTB do 95.9 1.1 3.7E-05 41.2 24.8 208 300-532 13-253 (315)
334 3ott_A Two-component system se 95.7 2.5 8.4E-05 44.5 33.1 272 223-533 62-344 (758)
335 3s25_A Hypothetical 7-bladed b 95.7 1.2 4.2E-05 40.7 21.7 176 282-498 21-216 (302)
336 3ott_A Two-component system se 95.6 2.8 9.4E-05 44.1 31.8 284 224-537 324-622 (758)
337 2woz_A Kelch repeat and BTB do 95.5 1.5 5.2E-05 40.2 22.4 208 301-532 25-263 (318)
338 2be1_A Serine/threonine-protei 95.4 0.098 3.4E-06 48.6 10.4 118 288-415 12-140 (339)
339 4asc_A Kelch repeat and BTB do 95.1 1.5 5E-05 40.3 18.0 179 341-539 7-218 (315)
340 2wg3_C Hedgehog-interacting pr 94.8 3.3 0.00011 40.4 29.3 121 224-348 14-159 (463)
341 1xi4_A Clathrin heavy chain; a 94.7 4.7 0.00016 44.7 22.2 197 229-454 71-294 (1630)
342 3sbq_A Nitrous-oxide reductase 94.6 3.8 0.00013 40.4 23.5 110 417-530 324-453 (638)
343 2zwa_A Leucine carboxyl methyl 94.6 3.9 0.00013 42.4 21.3 204 284-499 396-636 (695)
344 2wg3_C Hedgehog-interacting pr 94.5 3.8 0.00013 40.0 27.3 115 277-395 16-159 (463)
345 2zwa_A Leucine carboxyl methyl 94.2 1.7 5.7E-05 45.2 17.4 153 338-499 397-578 (695)
346 2l5g_B Putative uncharacterize 94.0 0.096 3.3E-06 30.4 4.0 33 30-62 5-37 (42)
347 2uvk_A YJHT; unknown function, 93.7 4.5 0.00015 37.7 22.5 51 441-498 286-342 (357)
348 3sbq_A Nitrous-oxide reductase 93.6 6.2 0.00021 39.0 19.0 71 469-540 324-406 (638)
349 3nmd_A CGMP dependent protein 93.6 0.39 1.3E-05 32.2 7.0 49 29-77 21-69 (72)
350 2woz_A Kelch repeat and BTB do 93.4 4.7 0.00016 36.9 24.4 144 338-498 109-287 (318)
351 3s25_A Hypothetical 7-bladed b 92.5 6 0.00021 36.0 22.7 181 279-498 57-255 (302)
352 3b7f_A Glycosyl hydrolase, BNR 92.4 7.5 0.00026 36.8 27.8 185 327-520 177-391 (394)
353 2be1_A Serine/threonine-protei 92.4 0.4 1.4E-05 44.5 8.2 118 386-508 10-138 (339)
354 3efg_A Protein SLYX homolog; x 90.7 0.63 2.2E-05 32.2 5.7 53 23-75 10-62 (78)
355 3b7f_A Glycosyl hydrolase, BNR 88.3 17 0.00059 34.3 28.2 72 328-401 116-204 (394)
356 3uc1_A DNA gyrase subunit A; D 87.5 17 0.00059 33.3 25.8 287 236-533 3-321 (327)
357 1g6u_A Domain swapped dimer; d 87.2 2.7 9.1E-05 23.8 5.5 26 49-74 21-46 (48)
358 2yy0_A C-MYC-binding protein; 86.5 1.1 3.9E-05 28.2 4.3 33 40-72 18-50 (53)
359 3ljm_A Coil Ser L9C; de novo d 85.8 1.5 5.2E-05 22.4 3.7 25 44-68 4-28 (31)
360 3hnw_A Uncharacterized protein 85.5 2.4 8.2E-05 33.2 6.7 46 27-72 75-120 (138)
361 3qhy_B Beta-lactamase inhibito 84.4 22 0.00076 31.8 23.7 217 276-538 25-242 (282)
362 2yy0_A C-MYC-binding protein; 81.6 2.1 7E-05 27.0 3.9 30 36-65 21-50 (53)
363 2w83_C C-JUN-amino-terminal ki 81.3 3.9 0.00013 27.5 5.2 49 25-73 28-76 (77)
364 1suu_A DNA gyrase subunit A; t 81.0 33 0.0011 31.2 23.5 198 338-539 7-228 (312)
365 1deb_A APC protein, adenomatou 80.0 7.8 0.00027 23.4 6.4 40 28-67 4-43 (54)
366 3efg_A Protein SLYX homolog; x 79.9 3.5 0.00012 28.5 5.0 39 31-69 25-63 (78)
367 1ic2_A Tropomyosin alpha chain 79.5 3.3 0.00011 28.9 4.9 41 34-74 34-74 (81)
368 4dzn_A Coiled-coil peptide CC- 79.5 3.8 0.00013 21.2 3.7 15 40-54 8-22 (33)
369 2jee_A YIIU; FTSZ, septum, coi 79.4 9.6 0.00033 26.3 6.9 36 27-62 6-41 (81)
370 4fla_A Regulation of nuclear P 78.7 1.4 4.9E-05 35.0 3.1 63 13-75 72-134 (152)
371 4emc_A Monopolin complex subun 78.0 3.4 0.00012 33.6 5.0 56 4-59 4-59 (190)
372 4gq2_M Nucleoporin NUP120; bet 77.7 12 0.00042 40.3 11.0 80 224-308 236-316 (950)
373 3q6k_A 43.2 kDa salivary prote 76.2 52 0.0018 30.9 21.9 152 247-405 124-306 (381)
374 4gq2_M Nucleoporin NUP120; bet 76.1 27 0.00092 37.6 13.1 35 328-363 237-271 (950)
375 1gmj_A ATPase inhibitor; coile 74.8 5.2 0.00018 27.7 4.6 24 36-59 53-76 (84)
376 1kd8_B GABH BLL, GCN4 acid bas 74.5 2.9 0.0001 23.2 2.6 24 26-49 7-30 (36)
377 1ic2_A Tropomyosin alpha chain 74.3 14 0.00048 25.7 7.0 50 25-74 18-67 (81)
378 2wuj_A Septum site-determining 74.1 2.6 8.8E-05 27.1 2.8 30 24-53 24-53 (57)
379 1sqj_A OXG-RCBH, oligoxylogluc 73.9 91 0.0031 32.7 20.3 65 326-393 14-83 (789)
380 1wp5_A Topoisomerase IV; broke 73.8 54 0.0018 29.9 20.7 197 338-538 4-221 (323)
381 3q6k_A 43.2 kDa salivary prote 72.9 62 0.0021 30.3 22.6 120 326-449 151-306 (381)
382 1zi0_A DNA gyrase subunit A; b 72.2 57 0.0019 29.5 26.4 241 285-537 2-272 (307)
383 3u1c_A Tropomyosin alpha-1 cha 71.9 3.6 0.00012 30.2 3.6 8 42-49 45-52 (101)
384 3nmd_A CGMP dependent protein 71.9 9 0.00031 25.7 5.0 35 34-68 33-67 (72)
385 3no0_A DNA gyrase subunit A; D 71.7 54 0.0019 29.1 23.0 199 327-537 24-239 (276)
386 2w6b_A RHO guanine nucleotide 71.7 15 0.00052 22.7 6.3 43 31-73 7-49 (56)
387 2l5g_B Putative uncharacterize 70.3 12 0.00041 21.8 4.6 29 41-69 9-37 (42)
388 2xus_A Breast cancer metastasi 70.2 16 0.00055 22.4 5.5 39 28-68 7-45 (49)
389 1suu_A DNA gyrase subunit A; t 70.1 64 0.0022 29.2 28.2 203 284-498 6-231 (312)
390 1kd8_A GABH AIV, GCN4 acid bas 69.9 6.1 0.00021 22.0 3.2 27 24-50 5-31 (36)
391 1wp5_A Topoisomerase IV; broke 69.8 66 0.0023 29.3 24.5 200 284-498 3-225 (323)
392 3he4_B Synzip5; heterodimeric 68.7 12 0.0004 21.0 4.2 27 30-56 9-35 (46)
393 2jee_A YIIU; FTSZ, septum, coi 68.6 24 0.00081 24.4 6.7 39 24-62 10-48 (81)
394 4hvt_A Ritya.17583.B, post-pro 68.5 1.1E+02 0.0039 31.5 23.0 249 227-497 132-429 (711)
395 3hnw_A Uncharacterized protein 68.5 16 0.00055 28.5 6.8 46 28-73 83-128 (138)
396 3zwu_A Alkaline phosphatase PH 67.6 43 0.0015 33.6 11.4 59 469-529 477-548 (592)
397 3no0_A DNA gyrase subunit A; D 67.3 67 0.0023 28.5 21.7 166 326-498 67-246 (276)
398 1zxa_A CGMP-dependent protein 67.1 6.5 0.00022 26.0 3.6 44 27-77 11-54 (67)
399 3ghg_A Fibrinogen alpha chain; 65.3 5.6 0.00019 38.0 4.2 38 31-68 114-151 (562)
400 3ra3_B P2F; coiled coil domain 65.2 6.2 0.00021 19.6 2.4 17 40-56 6-22 (28)
401 1joc_A EEA1, early endosomal a 64.7 21 0.00073 27.2 6.8 40 28-67 5-44 (125)
402 3p8c_E Probable protein brick1 63.7 20 0.00069 24.2 5.5 46 27-72 20-69 (75)
403 2lw1_A ABC transporter ATP-bin 63.3 34 0.0012 24.2 7.2 45 28-72 23-73 (89)
404 3u59_A Tropomyosin beta chain; 63.2 9.9 0.00034 27.8 4.4 22 39-60 42-63 (101)
405 3cvf_A Homer-3, homer protein 62.9 13 0.00044 25.6 4.5 48 28-75 28-75 (79)
406 3uc1_A DNA gyrase subunit A; D 62.4 94 0.0032 28.4 24.0 207 327-538 42-275 (327)
407 3u1c_A Tropomyosin alpha-1 cha 61.5 30 0.001 25.2 6.8 43 28-70 45-87 (101)
408 3pp5_A BRK1, protein brick1; t 61.5 34 0.0012 23.0 6.2 47 27-73 20-70 (73)
409 2wq1_A General control protein 61.2 5.8 0.0002 21.6 2.0 23 25-47 5-27 (33)
410 1lwu_C Fibrinogen gamma chain; 60.9 17 0.00058 33.1 6.4 43 29-71 14-56 (323)
411 1uo4_A General control protein 60.6 6.9 0.00024 21.5 2.3 25 24-48 5-29 (34)
412 3l6v_A GYRA, DNA gyrase subuni 60.5 1.1E+02 0.0037 28.5 28.1 153 283-449 4-180 (370)
413 1zi0_A DNA gyrase subunit A; b 59.0 1E+02 0.0035 27.8 28.1 253 236-498 3-277 (307)
414 3ra3_A P1C; coiled coil domain 57.9 13 0.00045 18.5 2.8 7 44-50 10-16 (28)
415 1hjb_A Ccaat/enhancer binding 57.3 26 0.00089 24.7 5.5 32 44-75 39-70 (87)
416 3t97_B Nuclear pore complex pr 57.1 38 0.0013 22.2 6.5 40 34-73 10-49 (65)
417 4g1a_A AQ-C16C19 peptide; heli 56.8 4.3 0.00015 20.9 1.0 21 41-61 7-27 (32)
418 1aq5_A Matrilin-1, CMP, cartil 56.2 27 0.00092 21.1 4.5 32 31-62 13-44 (47)
419 1p9i_A Cortexillin I/GCN4 hybr 55.6 8.7 0.0003 19.6 2.0 16 34-49 6-21 (31)
420 4hvt_A Ritya.17583.B, post-pro 55.6 1.9E+02 0.0065 29.8 23.7 228 282-530 137-415 (711)
421 1gmj_A ATPase inhibitor; coile 55.2 48 0.0017 23.0 6.3 24 50-73 53-76 (84)
422 3c3f_A Alpha/beta peptide with 54.3 8.8 0.0003 21.0 2.0 20 27-46 8-27 (34)
423 3m48_A General control protein 54.1 15 0.00052 20.1 2.9 24 24-47 4-27 (33)
424 3w03_C DNA repair protein XRCC 53.9 24 0.00081 28.9 5.5 48 25-72 136-183 (184)
425 3nr7_A DNA-binding protein H-N 53.9 25 0.00084 24.7 4.9 42 21-62 25-66 (86)
426 4g2k_A General control protein 53.8 43 0.0015 24.9 6.2 42 19-60 13-54 (125)
427 4emc_A Monopolin complex subun 53.8 38 0.0013 27.6 6.5 48 24-71 17-64 (190)
428 1t2k_D Cyclic-AMP-dependent tr 53.6 39 0.0013 21.8 5.6 38 37-74 18-55 (61)
429 3u59_A Tropomyosin beta chain; 53.4 35 0.0012 24.9 5.9 44 28-71 45-88 (101)
430 4a9v_A PHOX; hydrolase, beta-p 52.7 45 0.0015 33.2 8.3 60 468-529 476-548 (592)
431 1ci6_A Transcription factor AT 51.9 44 0.0015 21.8 5.6 37 36-72 18-54 (63)
432 3mq7_A Bone marrow stromal ant 51.3 71 0.0024 23.6 7.0 26 43-68 73-98 (121)
433 1jcd_A Major outer membrane li 51.2 42 0.0014 20.9 6.4 43 28-70 5-47 (52)
434 1deq_A Fibrinogen (alpha chain 51.1 16 0.00053 33.5 4.4 8 4-11 96-103 (390)
435 3oja_B Anopheles plasmodium-re 50.8 16 0.00054 37.0 5.1 14 54-67 550-563 (597)
436 2wuj_A Septum site-determining 50.7 18 0.0006 23.1 3.5 30 32-61 25-54 (57)
437 2zqm_A Prefoldin beta subunit 50.7 39 0.0013 25.2 6.2 39 25-63 68-106 (117)
438 2v4h_A NF-kappa-B essential mo 50.4 45 0.0015 24.4 5.8 29 27-55 31-59 (110)
439 3cvf_A Homer-3, homer protein 50.1 59 0.002 22.3 6.8 38 29-66 8-45 (79)
440 3qh9_A Liprin-beta-2; coiled-c 50.0 54 0.0019 22.4 5.8 15 44-58 36-50 (81)
441 4fhn_B Nucleoporin NUP120; pro 49.8 29 0.00099 38.3 7.3 37 376-412 239-275 (1139)
442 1jcd_A Major outer membrane li 49.7 45 0.0015 20.8 5.7 37 35-71 5-41 (52)
443 2ve7_A Kinetochore protein HEC 49.1 26 0.00088 31.9 5.7 43 27-69 171-213 (315)
444 2bni_A General control protein 48.4 13 0.00044 20.5 2.1 21 26-46 7-27 (34)
445 2wt7_A Proto-oncogene protein 48.3 54 0.0018 21.3 5.9 37 37-73 19-55 (63)
446 2oqq_A Transcription factor HY 48.3 39 0.0013 19.7 5.5 22 40-61 16-37 (42)
447 3cve_A Homer protein homolog 1 47.5 62 0.0021 21.8 6.3 44 31-74 4-47 (72)
448 1nkp_B MAX protein, MYC proto- 47.4 48 0.0017 23.0 5.7 20 54-73 60-79 (83)
449 3l6v_A GYRA, DNA gyrase subuni 47.2 1.8E+02 0.0062 27.0 26.4 250 233-497 5-315 (370)
450 1wt6_A Myotonin-protein kinase 46.6 68 0.0023 22.0 6.9 48 27-74 14-64 (81)
451 1ci6_A Transcription factor AT 46.4 58 0.002 21.2 6.8 34 29-62 25-58 (63)
452 1fxk_C Protein (prefoldin); ar 46.4 51 0.0017 25.3 6.3 43 26-68 87-129 (133)
453 2w6a_A ARF GTPase-activating p 46.4 53 0.0018 20.7 5.9 29 33-61 26-54 (63)
454 3m9b_A Proteasome-associated A 46.3 30 0.001 29.8 5.2 40 37-76 57-96 (251)
455 2hy6_A General control protein 46.0 20 0.00069 19.7 2.6 20 27-46 8-27 (34)
456 3zwu_A Alkaline phosphatase PH 45.6 66 0.0022 32.3 8.4 59 329-392 478-548 (592)
457 1fxk_A Prefoldin; archaeal pro 45.2 47 0.0016 24.2 5.8 38 26-63 64-101 (107)
458 2akf_A Coronin-1A; coiled coil 45.2 33 0.0011 18.0 3.5 6 41-46 6-11 (32)
459 4etp_A Kinesin-like protein KA 45.1 39 0.0013 32.0 6.5 50 27-76 10-59 (403)
460 1nkp_B MAX protein, MYC proto- 44.6 48 0.0016 23.0 5.3 38 29-66 42-79 (83)
461 4a9v_A PHOX; hydrolase, beta-p 44.5 76 0.0026 31.6 8.4 62 327-393 476-549 (592)
462 3trt_A Vimentin; cytoskeleton, 44.5 72 0.0024 21.6 6.2 17 57-73 58-74 (77)
463 1go4_E MAD1 (mitotic arrest de 44.0 37 0.0013 24.5 4.6 29 27-55 12-40 (100)
464 2oxj_A Hybrid alpha/beta pepti 43.7 16 0.00056 20.0 2.0 18 28-45 9-26 (34)
465 1t2k_D Cyclic-AMP-dependent tr 43.4 64 0.0022 20.8 7.0 33 29-61 24-56 (61)
466 3f7f_A Nucleoporin NUP120; nuc 43.3 1.5E+02 0.005 30.5 10.5 75 226-307 224-303 (729)
467 3mq7_A Bone marrow stromal ant 43.2 76 0.0026 23.4 6.1 27 50-76 73-99 (121)
468 1zxa_A CGMP-dependent protein 42.5 58 0.002 21.5 4.9 29 27-55 25-53 (67)
469 1jnm_A Proto-oncogene C-JUN; B 42.3 67 0.0023 20.7 6.5 43 33-75 14-56 (62)
470 2wt7_A Proto-oncogene protein 42.1 69 0.0024 20.8 6.8 32 29-60 25-56 (63)
471 1ses_A Seryl-tRNA synthetase; 42.0 51 0.0017 31.4 6.8 44 41-84 64-107 (421)
472 1hjb_A Ccaat/enhancer binding 42.0 88 0.003 22.0 6.8 32 31-62 40-71 (87)
473 3mud_A DNA repair protein XRCC 41.8 56 0.0019 26.4 5.8 47 25-71 119-165 (175)
474 1go4_E MAD1 (mitotic arrest de 41.7 52 0.0018 23.8 5.0 35 41-75 12-46 (100)
475 2dgc_A Protein (GCN4); basic d 41.5 71 0.0024 20.8 5.5 42 29-70 18-59 (63)
476 4egx_A Kinesin-like protein KI 41.4 62 0.0021 26.6 6.4 43 29-74 7-49 (184)
477 3i00_A HIP-I, huntingtin-inter 41.3 99 0.0034 23.3 6.8 42 24-65 12-57 (120)
478 2ynz_A General control protein 41.3 1.2E+02 0.004 23.8 7.2 52 23-74 2-53 (154)
479 2zqm_A Prefoldin beta subunit 41.1 74 0.0025 23.6 6.4 40 36-75 72-111 (117)
480 1dip_A Delta-sleep-inducing pe 40.9 78 0.0027 21.1 5.5 22 41-62 15-36 (78)
481 1wle_A Seryl-tRNA synthetase; 40.8 69 0.0024 31.3 7.6 40 42-81 117-156 (501)
482 2ocy_A RAB guanine nucleotide 40.4 98 0.0033 24.5 6.9 42 35-76 102-143 (154)
483 2wt7_B Transcription factor MA 40.0 83 0.0029 22.2 5.8 33 39-71 53-85 (90)
484 1gd2_E Transcription factor PA 39.9 56 0.0019 21.9 4.7 22 38-59 26-47 (70)
485 1l8d_A DNA double-strand break 39.7 78 0.0027 23.3 6.3 38 35-72 65-102 (112)
486 2ic9_A Nucleocapsid protein; h 39.5 55 0.0019 23.3 4.7 10 55-64 59-68 (96)
487 3he4_A Synzip6; heterodimeric 39.1 42 0.0014 19.7 3.4 25 37-61 27-51 (56)
488 3qh9_A Liprin-beta-2; coiled-c 38.9 92 0.0031 21.3 6.3 38 36-73 35-72 (81)
489 1t3j_A Mitofusin 1; coiled coi 38.3 65 0.0022 23.1 5.0 51 24-74 33-90 (96)
490 2l5g_A GPS2 protein, G protein 37.8 55 0.0019 18.4 3.7 15 47-61 14-28 (38)
491 3iv1_A Tumor susceptibility ge 37.5 44 0.0015 22.8 3.9 40 23-62 35-74 (78)
492 3l4q_C Phosphatidylinositol 3- 37.3 1.5E+02 0.0051 23.9 7.6 63 6-75 82-144 (170)
493 1gu4_A CAAT/enhancer binding p 37.0 58 0.002 22.3 4.5 39 26-64 35-73 (78)
494 4fi5_A Nucleoprotein; structur 36.7 62 0.0021 23.7 4.7 33 30-62 58-90 (113)
495 1gd2_E Transcription factor PA 36.6 83 0.0028 21.0 5.1 43 26-68 28-70 (70)
496 2q6q_A Spindle POLE BODY compo 36.5 88 0.003 20.4 6.8 48 28-75 4-51 (74)
497 1lwu_C Fibrinogen gamma chain; 36.4 75 0.0026 28.8 6.5 53 23-75 1-53 (323)
498 3a7p_A Autophagy protein 16; c 36.4 98 0.0034 24.3 6.2 47 24-70 79-125 (152)
499 3gp4_A Transcriptional regulat 36.3 1E+02 0.0034 24.0 6.6 55 21-75 75-129 (142)
500 3q0x_A Centriole protein; cent 36.1 1.1E+02 0.0038 26.0 7.1 50 25-74 169-218 (228)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.5e-46 Score=387.89 Aligned_cols=367 Identities=12% Similarity=0.182 Sum_probs=288.8
Q ss_pred CeeeecCCcceeeEEEEcccccccC--CCCccEEEEeecC---CCceEEecccccccceEEecCCC-------------C
Q 009203 147 SSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRG---TKRKFEQKEHRELIPLVRTSASP-------------A 208 (540)
Q Consensus 147 ~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~d-------------~ 208 (540)
....+.+|...|.++++.|...+.+ +.|..+. +|... ......+.+|...|..+++.++. +
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~-lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR-IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEE-EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 4456789999999999999987776 4455544 44421 22344567888888888876542 3
Q ss_pred eEEEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC
Q 009203 209 TIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ 285 (540)
Q Consensus 209 ~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 285 (540)
+|++|+.. ..+.+|.+.|++++|+|++..+|++|+.|++|++||....+....+ .+|...|.+++|+|+
T Consensus 130 ~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l--------~~H~~~V~~v~fspd 201 (611)
T 1nr0_A 130 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--------GEHTKFVHSVRYNPD 201 (611)
T ss_dssp EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--------CCCSSCEEEEEECTT
T ss_pred EEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee--------ccccCceEEEEECCC
Confidence 67888643 4588999999999999974457999999999999998876554444 589999999999999
Q ss_pred CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecC----CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC
Q 009203 286 GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD----KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED 361 (540)
Q Consensus 286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 361 (540)
|++|+++ +.|++|++||+.++ .+...+.. ...|.+.|.+++|+| ++.+|++++.|++|++||+.++++
T Consensus 202 g~~las~----s~D~~i~lwd~~~g---~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 202 GSLFAST----GGDGTIVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp SSEEEEE----ETTSCEEEEETTTC---CEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCEEEEE----ECCCcEEEEECCCC---cEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCce
Confidence 9999999 99999999999876 34444421 013778899999999 999999999999999999988754
Q ss_pred ccccc--------------------------------------eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203 362 SWKPK--------------------------------------ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA 403 (540)
Q Consensus 362 ~~~~~--------------------------------------~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~ 403 (540)
..... .....+|...|++++|+|+|++|++++.|+.|++||+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~ 353 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 22110 0112469999999999999999999999999999999
Q ss_pred CCCCeeeee-----------------------------------------------------------------------
Q 009203 404 GVGRADFKH----------------------------------------------------------------------- 412 (540)
Q Consensus 404 ~~~~~~~~~----------------------------------------------------------------------- 412 (540)
.++......
T Consensus 354 ~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~ 433 (611)
T 1nr0_A 354 STGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 433 (611)
T ss_dssp TTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSE
T ss_pred CCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCce
Confidence 876542211
Q ss_pred ------------ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC
Q 009203 413 ------------QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL 480 (540)
Q Consensus 413 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 480 (540)
.....+.+++|+|++ .+|++|+.|++|++||+.+...... .. .+|...|++++|+|+|+
T Consensus 434 v~~~~~~~~~~~~~~~~v~~va~spdg---~~lasgs~D~~v~lwd~~~~~~~~~-----~~-~~h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 434 IAIYSHGKLTEVPISYNSSCVALSNDK---QFVAVGGQDSKVHVYKLSGASVSEV-----KT-IVHPAEITSVAFSNNGA 504 (611)
T ss_dssp EEEEETTEEEEEECSSCEEEEEECTTS---CEEEEEETTSEEEEEEEETTEEEEE-----EE-EECSSCEEEEEECTTSS
T ss_pred EEEEeCCceeeeecCCCceEEEEeCCC---CEEEEeCCCCeEEEEEccCCceeee-----ec-cCCCCceEEEEECCCCC
Confidence 001224567788877 7999999999999999976542111 12 46888999999999999
Q ss_pred EEEEEeCCCcEEEEeccCCCCccccc--ccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 481 YITSGSADPVIHLFDIRYSANKPSQS--IRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 481 ~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+|++++.|+.|++|++.+. ++.+.. +.+|...|++++|+|||++|++|+.|++|+||++
T Consensus 505 ~las~s~d~~v~~w~~~~~-~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVANN-FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp EEEEEETTSCEEEEEGGGT-TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEcCCCCEEEEEcCCC-CceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 9999999999999999862 333333 4459999999999999999999999999999985
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-46 Score=372.84 Aligned_cols=289 Identities=16% Similarity=0.265 Sum_probs=256.0
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.+|.++|++++|+|+ +.+|++|+.||+|+|||+.+++....+ .+|.+.|.+++|+|++++|++| +
T Consensus 103 ~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l--------~~h~~~V~~v~~~~~~~~l~sg----s 169 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTL--------KGHTDSVQDISFDHSGKLLASC----S 169 (410)
T ss_dssp EEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEE--------CCCSSCEEEEEECTTSSEEEEE----E
T ss_pred eecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEE--------eccCCcEEEEEEcCCCCEEEEE----e
Confidence 35799999999999996 899999999999999999998877666 6899999999999999999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.|++|++||+.++ .++..+.+ |...|.+++|+| ++.+|++|+.|++|++||++++.+ ...+ .+|...|
T Consensus 170 ~D~~i~iwd~~~~---~~~~~~~~---h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~---~~~~--~~h~~~v 237 (410)
T 1vyh_C 170 ADMTIKLWDFQGF---ECIRTMHG---HDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC---VKTF--TGHREWV 237 (410)
T ss_dssp TTSCCCEEETTSS---CEEECCCC---CSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE---EEEE--ECCSSCE
T ss_pred CCCeEEEEeCCCC---ceeEEEcC---CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcE---EEEE--eCCCccE
Confidence 9999999999875 55666664 677899999999 999999999999999999999875 2333 5699999
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCC-----------------CceEEEEEcCC
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDF-----------------NLFMVQTGTPG 439 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~d 439 (540)
.++.|+|++.+|++|+.|+.|++||++++...... .+...+.++.|+|+.. .+.+|++|+.|
T Consensus 238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D 317 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence 99999999999999999999999999998876654 4556788999988632 13589999999
Q ss_pred CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEE
Q 009203 440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW 519 (540)
Q Consensus 440 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~ 519 (540)
+.|++||++++.... .+.+|...|++++|+|+|++|++|+.||.|++||+.+ ++++..+.+|...|++++|
T Consensus 318 ~~i~iwd~~~~~~~~-------~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~--~~~~~~~~~h~~~v~~l~~ 388 (410)
T 1vyh_C 318 KTIKMWDVSTGMCLM-------TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN--KRCMKTLNAHEHFVTSLDF 388 (410)
T ss_dssp SEEEEEETTTTEEEE-------EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT--SCCCEEEECCSSCEEEEEE
T ss_pred CeEEEEECCCCceEE-------EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEE
Confidence 999999999877543 3457899999999999999999999999999999987 7788899999999999999
Q ss_pred cCCCCEEEEEEcCCcEEEEeC
Q 009203 520 HYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 520 s~~~~~l~s~~~dg~v~iw~l 540 (540)
+|++.+|++|+.||+|+||++
T Consensus 389 ~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 389 HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CSSSSCEEEEETTSEEEEEC-
T ss_pred cCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999985
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=352.71 Aligned_cols=288 Identities=17% Similarity=0.223 Sum_probs=249.2
Q ss_pred cccccCceEEEEEecC---CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 219 SSLHKRKLRSLSLNPV---NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd---~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
+.+|.+.|++|+|+|+ ++.+|++|+.|++|+||++......... .. .+|...|.+++|++++.+++++
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~--~l----~gh~~~v~~~~~~~~~~~l~s~--- 98 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW--SL----EGHQLGVVSVDISHTLPIAASS--- 98 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE--EE----CCCSSCEEEEEECSSSSEEEEE---
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee--ee----ccCCCCEEEEEECCCCCEEEEE---
Confidence 4799999999999984 3579999999999999999875432211 11 5899999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.|+.|++||+.++ ..+..+.. +...+.+++|+| ++.+|++|+.||.|++||+.++.. ......|..
T Consensus 99 -s~D~~i~lWd~~~~---~~~~~~~~---~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~-----~~~~~~~~~ 165 (321)
T 3ow8_A 99 -SLDAHIRLWDLENG---KQIKSIDA---GPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKK-----EYSLDTRGK 165 (321)
T ss_dssp -ETTSEEEEEETTTT---EEEEEEEC---CTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSE-----EEEEECSSS
T ss_pred -eCCCcEEEEECCCC---CEEEEEeC---CCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCce-----eEEecCCCc
Confidence 99999999999986 45555554 456789999999 999999999999999999998864 222345888
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
.|.+++|+|+|++|++++.||.|++||+++++.+.... +...+.++.|+|++ .+|++|+.|+.|++||+++.....
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~---~~l~s~s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS---QLLVTASDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS---CEEEEECTTSCEEEEETTTCCEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC---CEEEEEcCCCeEEEEECCCcceeE
Confidence 99999999999999999999999999999998876654 45678899999987 699999999999999999776433
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCc
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLN 534 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~ 534 (540)
.+.+|...|.+++|+|++.+|++|+.||.|++||+.+ ++++..+.+|.+.|++++|+|++++|++++.||+
T Consensus 243 -------~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 243 -------TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT--RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp -------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred -------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 4568999999999999999999999999999999997 7888999999999999999999999999999999
Q ss_pred EEEEeC
Q 009203 535 IGLHKI 540 (540)
Q Consensus 535 v~iw~l 540 (540)
|+|||+
T Consensus 314 i~vwd~ 319 (321)
T 3ow8_A 314 IHIYDC 319 (321)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-45 Score=383.52 Aligned_cols=343 Identities=17% Similarity=0.199 Sum_probs=271.2
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK 223 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~ 223 (540)
.++.+|...|.++++.|..+ ..+++++.|++|++|+.. ..+.+|.
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~------------------------------~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~ 190 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRP------------------------------FRIISGSDDNTVAIFEGPPFKFKSTFGEHT 190 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSS------------------------------CEEEEEETTSCEEEEETTTBEEEEEECCCS
T ss_pred ceecCCCCCceEEEECCCCC------------------------------eEEEEEeCCCeEEEEECCCCeEeeeecccc
Confidence 44567778888888877643 147788899999999864 4588999
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
+.|++++|+|| +.+||+|+.|++|+|||+.+++....+.... ....+|.+.|.+++|+|+|++|+++ +.|++|+
T Consensus 191 ~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~-~~~~~h~~~V~~v~~spdg~~l~s~----s~D~~v~ 264 (611)
T 1nr0_A 191 KFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAHSGSVFGLTWSPDGTKIASA----SADKTIK 264 (611)
T ss_dssp SCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTT-SSSCSSSSCEEEEEECTTSSEEEEE----ETTSEEE
T ss_pred CceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeecccc-ccccccCCCEEEEEECCCCCEEEEE----eCCCeEE
Confidence 99999999996 9999999999999999998887655442110 1113799999999999999999999 9999999
Q ss_pred EEecCCCCCceeEEeec----------------------------------------CCCCcccceeEEEEeCCCCCEEE
Q 009203 304 VLNLNKTKGRACVTFLD----------------------------------------DKPHVKGIINSIIFLPWENPCFA 343 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~----------------------------------------~~~~~~~~v~~~~~~p~~~~~l~ 343 (540)
+||+.+++ ++..+. ....|...|.+++|+| ++.+|+
T Consensus 265 lWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~ 340 (611)
T 1nr0_A 265 IWNVATLK---VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLF 340 (611)
T ss_dssp EEETTTTE---EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred EEeCCCCc---eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEE
Confidence 99998752 222111 0113678899999999 999999
Q ss_pred EEecCCcEEEEecCCCCCccccce--------------------------------------------------------
Q 009203 344 TGGSDHAVVLWSERDAEDSWKPKA-------------------------------------------------------- 367 (540)
Q Consensus 344 s~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------------------------- 367 (540)
+++.|++|++||+.++........
T Consensus 341 s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s 420 (611)
T 1nr0_A 341 SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 420 (611)
T ss_dssp EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC
T ss_pred EEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEe
Confidence 999999999999987643110000
Q ss_pred ---------------------eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--eeeeccCccEEEEeec
Q 009203 368 ---------------------LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--DFKHQIESKCMSVLPN 424 (540)
Q Consensus 368 ---------------------~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~ 424 (540)
+....|...+.+++|+|+|++|++|+.|+.|++||+..+.. .....+...+.+++|+
T Consensus 421 ~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fs 500 (611)
T 1nr0_A 421 ADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 500 (611)
T ss_dssp TTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC
T ss_pred CCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEEC
Confidence 00001334578999999999999999999999999987643 2334566789999999
Q ss_pred CCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc
Q 009203 425 PCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS 504 (540)
Q Consensus 425 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~ 504 (540)
|++ .+|++++.|++|++||+.+....... .....|...|++++|+|||++|++|+.|+.|++||+..+ ....
T Consensus 501 pdg---~~las~s~d~~v~~w~~~~~~~~~~~----~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~-~~~~ 572 (611)
T 1nr0_A 501 NNG---AFLVATDQSRKVIPYSVANNFELAHT----NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP-SDHP 572 (611)
T ss_dssp TTS---SEEEEEETTSCEEEEEGGGTTEESCC----CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT-TSCC
T ss_pred CCC---CEEEEEcCCCCEEEEEcCCCCceeee----eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc-cccc
Confidence 988 79999999999999999873222211 022359999999999999999999999999999999874 2233
Q ss_pred -cccccc-ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 505 -QSIRAH-QKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 505 -~~~~~h-~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..+.+| ...|++++|+|+++ |++++.|++|++|++
T Consensus 573 ~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 573 IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 567789 89999999999998 999999999999986
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-45 Score=353.45 Aligned_cols=289 Identities=19% Similarity=0.258 Sum_probs=249.4
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.+|.+.|++++|+|| +.+|++|+.||+|+|||+.++.....+ ..|...|.+++|+|++++|+++ +
T Consensus 50 ~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~s~----~ 116 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAI--------PLRSSWVMTCAYAPSGNYVACG----G 116 (340)
T ss_dssp EECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEE--------ECSSSCEEEEEECTTSSEEEEE----E
T ss_pred eecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCCcceEe--------ecCCccEEEEEECCCCCEEEEE----e
Confidence 35799999999999996 999999999999999999988766555 4788899999999999999999 9
Q ss_pred CCCeEEEEecCCCCCc-eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 298 GDSQISVLNLNKTKGR-ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
.|+.|++||+.+.... .....+.+ |.+.|.++.|++ ++ .+++++.|++|++||+.+++. .....+|...
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~-----~~~~~~h~~~ 186 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAG---HTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQ-----TTTFTGHTGD 186 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEEC---CSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEE-----EEEECCCSSC
T ss_pred CCCeEEEEECccCCCcceeEEEecC---CCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcE-----EEEEcCCCCc
Confidence 9999999999875321 23344444 678899999997 55 588999999999999998874 2233569999
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
|.+++|+|++.+|++|+.|+.|++||++++.....+. +...+.++.|+|++ .+|++|+.||+|++||+++......
T Consensus 187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---~~l~s~s~d~~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC---CEEEEEcCCCcEEEEECCCCcEEEE
Confidence 9999999999999999999999999999998876654 45778999999987 6999999999999999998764332
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI 535 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v 535 (540)
+ ....+...|++++|+|+|++|++|+.||.|++||+.+ ...+..+.+|.+.|++++|+|+|.+|++|+.||+|
T Consensus 264 -~----~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 264 -Y----SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp -E----CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred -E----ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc--CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 1 1233455799999999999999999999999999987 67888899999999999999999999999999999
Q ss_pred EEEe
Q 009203 536 GLHK 539 (540)
Q Consensus 536 ~iw~ 539 (540)
+|||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9997
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-44 Score=348.75 Aligned_cols=290 Identities=18% Similarity=0.220 Sum_probs=247.1
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.||.+.|++++|+|| +.+|++|+.||+|+|||..+++....+ ..|...|.+++|+|+|.+|+++ +
T Consensus 59 ~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~--------~~~~~~v~~~~~sp~g~~lasg----~ 125 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAV--------TMPCTWVMACAYAPSGCAIACG----G 125 (354)
T ss_dssp EEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEE--------ECSSSCCCEEEECTTSSEEEEE----S
T ss_pred EecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEE--------ecCCCCEEEEEECCCCCEEEEe----e
Confidence 35799999999999996 899999999999999999887765555 3677889999999999999999 9
Q ss_pred CCCeEEEEecCCCCC---ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 298 GDSQISVLNLNKTKG---RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
.|+.+++|++..... ......+. .|.+.|.+++|+| ++..|++++.|++|++||+++++. ...+ .+|.
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~---~~~~--~~h~ 196 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVA---MHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQL---LQSF--HGHG 196 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEE---ECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE---EEEE--ECCS
T ss_pred CCCCEEEEEEeccccccccccceeee---ccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeE---EEEE--cCCC
Confidence 999999999875421 11223333 2678899999999 999999999999999999999874 2233 5699
Q ss_pred cceeEEEecc--CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 375 SAVMGVAGMQ--QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 375 ~~v~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
..|.+++|+| +|++|++|+.||.|++||+++++++..+. +...+.++.|+|++ .+|++|+.|++|++||++...
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---~~l~s~s~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG---DAFASGSDDATCRLYDLRADR 273 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC---CEEEEEeCCCeEEEEECCCCc
Confidence 9999999987 57899999999999999999998876654 46778999999987 699999999999999999765
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
.... + ....+...+.+++|+|+|.+|++|+.|+.|++||+.+ +..+..+.+|.+.|++++|+|+|++|++|+.
T Consensus 274 ~~~~-~----~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 274 EVAI-Y----SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK--GSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp EEEE-E----CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEE-E----cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC--CceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 4322 1 1123445789999999999999999999999999987 6778889999999999999999999999999
Q ss_pred CCcEEEEe
Q 009203 532 DLNIGLHK 539 (540)
Q Consensus 532 dg~v~iw~ 539 (540)
||+|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.7e-45 Score=352.34 Aligned_cols=307 Identities=17% Similarity=0.234 Sum_probs=231.8
Q ss_pred cCCCCeEEEeccc-hhcccccCceEEEEEecCCCcEEEEEeC------CceEEEEEcCCCCCcceeecccccCCCCCCCC
Q 009203 204 SASPATIHCHTSN-HVSSLHKRKLRSLSLNPVNEQLFVTSAL------DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW 276 (540)
Q Consensus 204 ~~~d~~i~~~~~~-~~~~~h~~~V~~l~~spd~~~~l~tg~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~ 276 (540)
+..+.....|+.. ....+|.+.|++|+|+|| |++||+|+. |+.|++|+..++.....+.... .+|...
T Consensus 22 ~~g~~~~~~w~~p~~~p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~----~~~~~~ 96 (357)
T 4g56_B 22 SNGSSKGSAWGRPVTAPACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG----VQTEAG 96 (357)
T ss_dssp ------------------CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE----EECSSC
T ss_pred cCCCccccccCCCCCCcccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc----CCCCCC
Confidence 3345556677654 335689999999999996 999999997 7889999988776544332221 368889
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE 356 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 356 (540)
|.+++|+|++.+|+ + +.||+|++||+.+++....... .. ..|.+.|.+++|+| ++++|++|+.|+.|++||+
T Consensus 97 V~~~~~s~d~~~l~-~----s~dg~v~lWd~~~~~~~~~~~~-~~-~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 97 VTDVAWVSEKGILV-A----SDSGAVELWEILEKESLLVNKF-AK-YEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEEEEEETTTEEEE-E----ETTSCEEEC--------CCCCE-EE-CCCSSCEEEEEECS-SSSEEEEEETTSCEEEEET
T ss_pred EEEEEEcCCCCEEE-E----ECCCEEEEeeccccceeEEEee-cc-CCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEEC
Confidence 99999999986554 5 6899999999987643211111 11 13678899999999 9999999999999999999
Q ss_pred CCCCCccccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCceE
Q 009203 357 RDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNLFM 432 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 432 (540)
.+++. .....+|...|++++|++++. ++++++.||.|++||+++++..... .....+.++.|+|++. .+
T Consensus 169 ~~~~~-----~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~~ 241 (357)
T 4g56_B 169 SQKAV-----LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD--DT 241 (357)
T ss_dssp TTTEE-----EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST--TE
T ss_pred CCCcE-----EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc--ce
Confidence 98874 223356999999999999875 7899999999999999998875543 3456788999999754 48
Q ss_pred EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccc
Q 009203 433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQ 511 (540)
Q Consensus 433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~ 511 (540)
|++|+.|+.|++||+++++... .+.+|...|++++|+|++ ++|++|+.||.|+|||+.+ ++++.. .+|.
T Consensus 242 la~g~~d~~i~~wd~~~~~~~~-------~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~--~~~~~~-~~H~ 311 (357)
T 4g56_B 242 FACGDETGNVSLVNIKNPDSAQ-------TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF--SEVFRD-LSHR 311 (357)
T ss_dssp EEEEESSSCEEEEESSCGGGCE-------EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS--CEEEEE-CCCS
T ss_pred EEEeecccceeEEECCCCcEeE-------EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC--CcEeEE-CCCC
Confidence 9999999999999999876533 446788999999999987 5799999999999999997 555544 4799
Q ss_pred cceeEEEEcC-CCCEEEEEEcCCcEEEEeC
Q 009203 512 KRVFKAVWHY-SHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 512 ~~i~~l~~s~-~~~~l~s~~~dg~v~iw~l 540 (540)
+.|++|+|+| ++.+|+|||.||+|++|++
T Consensus 312 ~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 9999999998 7899999999999999986
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.5e-45 Score=358.72 Aligned_cols=302 Identities=20% Similarity=0.240 Sum_probs=246.5
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
++.||.+.|++++|+|+ +.+|++|+.||+|+|||+.+++....+ .+|...|.+++|+|+|++|+++ +
T Consensus 61 ~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~--------~~h~~~v~~~~~s~~g~~las~----~ 127 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAI--------KLHCPWVMECAFAPNGQSVACG----G 127 (380)
T ss_dssp EECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEE--------ECCCTTCCCCEECTTSSEEEEC----C
T ss_pred cccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEE--------ecCCCCEEEEEECCCCCEEEEe----e
Confidence 46799999999999996 899999999999999999988766655 4788999999999999999999 9
Q ss_pred CCCeEEEEecCCCCC----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203 298 GDSQISVLNLNKTKG----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
.|+.|++||+.+... ......+. .|.+.|.++.|.|.++..|++|+.|++|++||+.+++...........+|
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~---gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h 204 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLT---GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCC---CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred CCCcEEEEECCCCccccCCccceeecc---CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence 999999999975321 11122333 47788999999995577899999999999999999875221111112568
Q ss_pred CcceeEEEecc-CCCEEEEEeCCCeEEEEECCC-CCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 374 SSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGV-GRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 374 ~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
...|.+++|++ ++++|++|+.|+.|++||++. +..+.. ..+...+.++.|+|++ .+|++|+.|++|++||++++
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~---~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG---QRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS---SEEEEECSSSCEEEEETTTT
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC---CeEEEEcCCCeEEEEECCCC
Confidence 99999999977 889999999999999999984 344443 3456778899999987 69999999999999999987
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc----cccccceeEEEEcCCCCEE
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI----RAHQKRVFKAVWHYSHPLL 526 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~~h~~~i~~l~~s~~~~~l 526 (540)
...............+...|++++|+|+|++|++|+.||.|++||+.. ++.+..+ .+|.+.|++++|+|+|.+|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 359 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL--AEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT--CCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC--CceEEEEecccCCCCCceEEEEECCCCCEE
Confidence 754332221112223444689999999999999999999999999987 4555444 6799999999999999999
Q ss_pred EEEEcCCcEEEEeC
Q 009203 527 ISISSDLNIGLHKI 540 (540)
Q Consensus 527 ~s~~~dg~v~iw~l 540 (540)
++|+.||+|+||++
T Consensus 360 ~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 360 CTGSWDKNLKIWAF 373 (380)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEeeCCCCEEEEec
Confidence 99999999999986
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.2e-44 Score=338.75 Aligned_cols=289 Identities=18% Similarity=0.190 Sum_probs=244.2
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.++.+|.+.|++++|+|| +.+|++|+.||+|+|||+.++.....+ .+|..+|.+++|+|++++|+++
T Consensus 7 ~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~---- 73 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSI--------QVTETPVRAGKFIARKNWIIVG---- 73 (304)
T ss_dssp EEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEEEGGGTEEEEE----
T ss_pred EeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEe--------eccCCcEEEEEEeCCCCEEEEE----
Confidence 457899999999999996 999999999999999999988766655 4788899999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|+.|++||+.++ ..+..+.+ |.+.|.+++|+| ++.+|++|+.|++|++||++++.. ......+|...
T Consensus 74 s~d~~i~vwd~~~~---~~~~~~~~---h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~----~~~~~~~h~~~ 142 (304)
T 2ynn_A 74 SDDFRIRVFNYNTG---EKVVDFEA---HPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWA----LEQTFEGHEHF 142 (304)
T ss_dssp ETTSEEEEEETTTC---CEEEEEEC---CSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTE----EEEEECCCCSC
T ss_pred CCCCEEEEEECCCC---cEEEEEeC---CCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcc----hhhhhcccCCc
Confidence 99999999999987 45666664 678899999999 999999999999999999987642 22233579999
Q ss_pred eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
|.+++|+| ++.+|++|+.|+.|++||++.+...... .....+..+.+.|... ..+|++|+.|++|++||++++.+.
T Consensus 143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~D~~i~iWd~~~~~~~ 221 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCV 221 (304)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTT-CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCC-CCEEEEEcCCCeEEEEeCCCCccc
Confidence 99999999 6789999999999999999887665443 2335566677766321 168999999999999999987654
Q ss_pred eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC--EEEEEEc
Q 009203 454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP--LLISISS 531 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~--~l~s~~~ 531 (540)
. .+.+|...|.+++|+|++.+|++|+.||.|++||+.+ .+.+..+..|...+++++|+|++. ++++|+.
T Consensus 222 ~-------~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 222 A-------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST--YKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp E-------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CCEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred e-------eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC--CceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence 3 4567999999999999999999999999999999998 788889999999999999999885 5777765
Q ss_pred CCcEEEEeC
Q 009203 532 DLNIGLHKI 540 (540)
Q Consensus 532 dg~v~iw~l 540 (540)
|| +.+|++
T Consensus 293 ~g-~~~~~~ 300 (304)
T 2ynn_A 293 NG-FTVLSL 300 (304)
T ss_dssp TE-EEEEEC
T ss_pred Cc-eEEEEe
Confidence 55 666653
No 10
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.7e-43 Score=365.57 Aligned_cols=350 Identities=20% Similarity=0.273 Sum_probs=287.5
Q ss_pred CCeeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccceEE---------ecCCCCeEEEec
Q 009203 146 GSSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPLVR---------TSASPATIHCHT 214 (540)
Q Consensus 146 ~~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~~d~~i~~~~ 214 (540)
.....+.+|...|.++++.|.....+ +.+..+. +|.........+.+|...|..++ +++.|+++++|+
T Consensus 212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~-~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK-LWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE-EECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEE-EEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence 34567778999999999999876555 4454444 34433333445567777776555 455688999997
Q ss_pred cc----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEE
Q 009203 215 SN----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLF 290 (540)
Q Consensus 215 ~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 290 (540)
.. ..+.+|.+.|++++|+|+ +.+|++++.|++|++||..... ...+ .+|...|.+++|+|++++|+
T Consensus 291 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~~~~~-~~~~--------~~~~~~v~~~~~s~~g~~l~ 360 (577)
T 2ymu_A 291 RNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQH-LQTL--------TGHSSSVWGVAFSPDGQTIA 360 (577)
T ss_dssp TTSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSCE-EEEE--------CCCSSCEEEEEECTTSSEEE
T ss_pred CCCcEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCe-eEEE--------eCCCCCEEEEEECCCCCEEE
Confidence 64 457899999999999996 8999999999999999986543 2233 57889999999999999999
Q ss_pred EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 291 SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
++ +.|+.|++||.. + ..+..+.. |...|.+++|+| ++.+|++++.|+.|++||... +. ...+
T Consensus 361 ~~----~~dg~v~~~~~~-~---~~~~~~~~---~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~~-~~---~~~~-- 422 (577)
T 2ymu_A 361 SA----SDDKTVKLWNRN-G---QLLQTLTG---HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG-QL---LQTL-- 422 (577)
T ss_dssp EE----ETTSEEEEEETT-C---CEEEEEEC---CSSCEEEEEECT-TSSCEEEEETTSEEEEECTTC-CE---EEEE--
T ss_pred EE----eCCCEEEEEcCC-C---CEEEEecC---CCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCC-CE---EEEe--
Confidence 99 999999999965 2 44555554 567899999999 999999999999999999654 32 2233
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
.+|...|++++|+|++++|++++.|+.|++||.. ++.+. ...+...+.+++|+|++ .+|++++.|+.|++||..
T Consensus 423 ~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~---~~las~~~d~~i~iw~~~- 497 (577)
T 2ymu_A 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG---QTIASASDDKTVKLWNRN- 497 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTS---CEEEEEETTSEEEEEETT-
T ss_pred cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCEEEEEcCC-
Confidence 4699999999999999999999999999999975 44443 34556788999999987 799999999999999964
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~ 529 (540)
++... .+.+|...|++++|+|+|++|++++.||.|++||.. ++++..+.+|.+.|++++|+|||++|+|+
T Consensus 498 ~~~~~-------~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~---~~~~~~~~~h~~~v~~~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 498 GQLLQ-------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPDGQTIASA 567 (577)
T ss_dssp SCEEE-------EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT---SCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred CCEEE-------EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC---CCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 33222 446799999999999999999999999999999975 67888999999999999999999999999
Q ss_pred EcCCcEEEEe
Q 009203 530 SSDLNIGLHK 539 (540)
Q Consensus 530 ~~dg~v~iw~ 539 (540)
+.|++|++||
T Consensus 568 ~~D~~i~~Wd 577 (577)
T 2ymu_A 568 SSDKTVKLWN 577 (577)
T ss_dssp ETTSCEEEEC
T ss_pred eCCCEEEEeC
Confidence 9999999997
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-43 Score=339.78 Aligned_cols=303 Identities=22% Similarity=0.285 Sum_probs=241.4
Q ss_pred hcccccC-ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 218 VSSLHKR-KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~-~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.+.+|.+ .|++++|+|| +.+||+|+.|++|+|||+..+........ ..+|...|.+++|+|+|++|+++
T Consensus 10 ~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~-----~~~h~~~v~~~~~sp~g~~l~s~---- 79 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVL-----SEGHQRTVRKVAWSPCGNYLASA---- 79 (345)
T ss_dssp EECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEE-----CSSCSSCEEEEEECTTSSEEEEE----
T ss_pred eecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeee-----ccccCCcEEEEEECCCCCEEEEE----
Confidence 4578988 9999999996 99999999999999999987643222111 14899999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|+.|++||+..+. ..++..+.+ |.+.|.+++|+| ++++|++|+.|++|++||+.++....... ...+|...
T Consensus 80 s~D~~v~iw~~~~~~-~~~~~~~~~---h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~h~~~ 152 (345)
T 3fm0_A 80 SFDATTCIWKKNQDD-FECVTTLEG---HENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVS--VLNSHTQD 152 (345)
T ss_dssp ETTSCEEEEEECCC--EEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEE--EECCCCSC
T ss_pred ECCCcEEEEEccCCC-eEEEEEccC---CCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEE--EecCcCCC
Confidence 999999999998652 244556664 678899999999 99999999999999999998765311112 23569999
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--ee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD--FK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
|.+++|+|++.+|++++.|+.|++||.+.+... .. ..+...+.++.|+|++ .+|++|+.|++|++||.......
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g---~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG---QRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEEECTTCT
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC---CEEEEEeCCCeEEEeccccCCCC
Confidence 999999999999999999999999999877543 22 3456788999999987 79999999999999997432211
Q ss_pred eee--------eccccccC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc--c-----cccccccccceeEE
Q 009203 454 IHA--------FGWKQESS-ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK--P-----SQSIRAHQKRVFKA 517 (540)
Q Consensus 454 ~~~--------~~~~~~~~-~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~--~-----~~~~~~h~~~i~~l 517 (540)
... ......+. .|...|.+++|+|++..|++++.|+.|++|+....... + .....+|...|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 000 00011222 37889999999999999999999999999998753111 1 12235799999999
Q ss_pred EEcCCCC-EEEEEEcCCcEEEEeC
Q 009203 518 VWHYSHP-LLISISSDLNIGLHKI 540 (540)
Q Consensus 518 ~~s~~~~-~l~s~~~dg~v~iw~l 540 (540)
+|+|++. +|++|+.||+|++|++
T Consensus 310 ~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 310 AWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEE
T ss_pred EEeCCCceEEEEcCCCCcEEEEEe
Confidence 9999984 9999999999999984
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-43 Score=347.07 Aligned_cols=282 Identities=17% Similarity=0.249 Sum_probs=245.5
Q ss_pred eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccC
Q 009203 150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKR 224 (540)
Q Consensus 150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~ 224 (540)
.+.+|...|+++.+.|..+ .+++++.|++|++|+.. ..+.+|.+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~-------------------------------~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~ 151 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFS-------------------------------VMVSASEDATIKVWDYETGDFERTLKGHTD 151 (410)
T ss_dssp EEECCSSCEEEEEECSSSS-------------------------------EEEEEESSSCEEEEETTTCCCCEEECCCSS
T ss_pred eecccCCcEEEEEEcCCCC-------------------------------EEEEEeCCCeEEEEECCCCcEEEEEeccCC
Confidence 4578999999999998743 57889999999999764 56899999
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV 304 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v 304 (540)
.|++++|+|+ +.+|++|+.|++|+|||+.+.+++..+ .+|...|.+++|+|++++|+++ +.|+.|++
T Consensus 152 ~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~~~--------~~h~~~V~~v~~~p~~~~l~s~----s~D~~i~~ 218 (410)
T 1vyh_C 152 SVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTM--------HGHDHNVSSVSIMPNGDHIVSA----SRDKTIKM 218 (410)
T ss_dssp CEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECC--------CCCSSCEEEEEECSSSSEEEEE----ETTSEEEE
T ss_pred cEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEE--------cCCCCCEEEEEEeCCCCEEEEE----eCCCeEEE
Confidence 9999999995 899999999999999999887765555 5899999999999999999999 99999999
Q ss_pred EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203 305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 384 (540)
||+.++ .++..+.+ |...|.++.|+| ++.+|++|+.|++|++||+.++.+ .. ...+|...|.+++|+|
T Consensus 219 wd~~~~---~~~~~~~~---h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~---~~--~~~~h~~~v~~~~~~~ 286 (410)
T 1vyh_C 219 WEVQTG---YCVKTFTG---HREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKEC---KA--ELREHRHVVECISWAP 286 (410)
T ss_dssp EETTTC---CEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE---EE--EECCCSSCEEEEEECC
T ss_pred EECCCC---cEEEEEeC---CCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCce---ee--EecCCCceEEEEEEcC
Confidence 999986 45666665 677899999999 999999999999999999998874 22 2356999999999999
Q ss_pred C--------------------CCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203 385 Q--------------------KQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLR 443 (540)
Q Consensus 385 ~--------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 443 (540)
+ |.+|++|+.|+.|++||++++.++.... +...+.++.|+|++ .+|++|+.|+.|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g---~~l~s~s~D~~i~ 363 (410)
T 1vyh_C 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG---KFILSCADDKTLR 363 (410)
T ss_dssp SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS---SCEEEEETTTEEE
T ss_pred cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC---CEEEEEeCCCeEE
Confidence 6 6789999999999999999998876643 55678899999987 6899999999999
Q ss_pred EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
+||+.+++... .+.+|...|++++|+|++.+|++|+.||.|+||+++
T Consensus 364 vwd~~~~~~~~-------~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 364 VWDYKNKRCMK-------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECCTTSCCCE-------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEECCCCceEE-------EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99998776533 446789999999999999999999999999999864
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.3e-43 Score=336.08 Aligned_cols=294 Identities=16% Similarity=0.193 Sum_probs=230.7
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCccee---ecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASL---LSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~---~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
...|...|.+++|+|| |++|++++ |+++++||.......... ..........|...|.+++|+|++ .|+++
T Consensus 26 ~~~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~--- 99 (344)
T 4gqb_B 26 PACMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVA--- 99 (344)
T ss_dssp CSSCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEE---
T ss_pred cccccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEE---
Confidence 3567788999999996 89999888 778888874211000000 000000002356789999999985 67788
Q ss_pred CCCCCeEEEEecCCCCCceeEEe-ecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 296 DSGDSQISVLNLNKTKGRACVTF-LDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
+.||+|+|||+.+++....... +. .|.+.|++++|+| ++++|++|+.|++|++||+.++++ .. ...+|.
T Consensus 100 -s~dg~v~lWd~~~~~~~~~~~~~~~---~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~---~~--~~~~h~ 169 (344)
T 4gqb_B 100 -SDSGAVELWELDENETLIVSKFCKY---EHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVV---LS--SYRAHA 169 (344)
T ss_dssp -ETTSEEEEEEECTTSSCEEEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE---EE--EECCCS
T ss_pred -ECCCEEEEEeccCCCceeEeecccc---CCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE---EE--EEcCcC
Confidence 8999999999998754332222 22 3678899999999 999999999999999999999874 22 335699
Q ss_pred cceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeeeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 375 SAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 375 ~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
..|++++|++++. +|++++.|+.|++||+++++...... ....+.++.|+|.+. .++++|+.||.|++||++++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS--EVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT--TEEEEEETTSEEEEEESCC-
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC--cceEEeccCCcEEEEECCCC
Confidence 9999999999884 78999999999999999988766533 345678999998654 48999999999999999987
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC-EEEE
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLIS 528 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s 528 (540)
+... .+.+|...|++++|+|+| ++|++|+.||.|+|||+.+ ++ +..+.+|.+.|++++|+|+++ +|++
T Consensus 248 ~~~~-------~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--~~-~~~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 248 SCVL-------SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--SE-LFRSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp -CCE-------EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--CE-EEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred cEEE-------EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--Cc-EEEEcCCCCCEEEEEEeCCCCeEEEE
Confidence 7543 456799999999999998 5799999999999999986 44 446789999999999999986 5779
Q ss_pred EEcCCcEEEEeC
Q 009203 529 ISSDLNIGLHKI 540 (540)
Q Consensus 529 ~~~dg~v~iw~l 540 (540)
||.||+|++|++
T Consensus 318 ~s~D~~v~~w~v 329 (344)
T 4gqb_B 318 VGWDHQVVHHVV 329 (344)
T ss_dssp EETTSCEEEEEC
T ss_pred EcCCCeEEEEEC
Confidence 999999999986
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.2e-42 Score=332.13 Aligned_cols=297 Identities=16% Similarity=0.227 Sum_probs=234.3
Q ss_pred hhcccccCceEEEEE-----ecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEE
Q 009203 217 HVSSLHKRKLRSLSL-----NPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFS 291 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~-----spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s 291 (540)
.++.||.+.|++++| ++.++.+|++|+.|++|+|||+...+......... ....+|...|.+++|+|++.+|++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~-~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPH-KALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEE-EEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccccccc-chhccCCCceEEEEECCCCCEEEE
Confidence 457899999999999 66248999999999999999997654211110000 111589999999999999999999
Q ss_pred EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc
Q 009203 292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN 371 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 371 (540)
+ +.|++|++||+.++ ..+..+.+ |.+.|.+++|+| ++.+|++|+.|++|++||+..... .......
T Consensus 94 ~----s~D~~v~lwd~~~~---~~~~~~~~---h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~ 159 (343)
T 2xzm_R 94 S----SWDKTLRLWDLRTG---TTYKRFVG---HQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK---FSSAEKE 159 (343)
T ss_dssp E----ETTSEEEEEETTSS---CEEEEEEC---CCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE---EECCTTT
T ss_pred E----cCCCcEEEEECCCC---cEEEEEcC---CCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce---eeeeccc
Confidence 9 99999999999986 44566664 678899999999 999999999999999999984321 1111123
Q ss_pred cCCcceeEEEeccCC----------CEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203 372 LHSSAVMGVAGMQQK----------QIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGR 440 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 440 (540)
.|...|.+++|+|++ .+|++++.||.|++||.. ...... ..+...+.++.|+|++ .+|++|+.|+
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g---~~l~sgs~dg 235 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNG---KYIATGGKDK 235 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTS---SEEEEEETTC
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCC---CEEEEEcCCC
Confidence 688999999999987 789999999999999954 443333 4456789999999988 7999999999
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-----------cc
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-----------RA 509 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----------~~ 509 (540)
.|++||+.........+ .+...|.+++|+|++.+++++ .|+.|++||+.+.....+..+ .+
T Consensus 236 ~v~iwd~~~~~~~~~~~-------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 236 KLLIWDILNLTYPQREF-------DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp EEEEEESSCCSSCSEEE-------ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred eEEEEECCCCcccceee-------cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 99999996544333222 234569999999999888765 577899999986322221122 26
Q ss_pred cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|...|++++|+|+|++|++|+.||.|++|++
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 8889999999999999999999999999985
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-41 Score=328.20 Aligned_cols=285 Identities=13% Similarity=0.193 Sum_probs=242.3
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccc
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLH 222 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h 222 (540)
...+.+|...|.++.+.|... .+++++.|++|++|+.. ..+.+|
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~-------------------------------~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 96 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSR-------------------------------LLLSASQDGKLIIWDSYTTNKVHAIPLR 96 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSS-------------------------------EEEEEETTTEEEEEETTTCCEEEEEECS
T ss_pred heeecCCCCceEEEEECCCCC-------------------------------EEEEEeCCCcEEEEECCCCCcceEeecC
Confidence 456679999999999988743 57888999999999754 457899
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...|.+++|+|+ +.+|++|+.|+.|++|++.+........... .+|...|.++.|++++. |+++ +.|+.|
T Consensus 97 ~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~-l~s~----s~d~~i 166 (340)
T 1got_B 97 SSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSREL----AGHTGYLSCCRFLDDNQ-IVTS----SGDTTC 166 (340)
T ss_dssp SSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEE----ECCSSCEEEEEEEETTE-EEEE----ETTSCE
T ss_pred CccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEe----cCCCccEEEEEECCCCc-EEEE----ECCCcE
Confidence 999999999995 9999999999999999998765322222221 48999999999998875 7777 899999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
++||+.++ ..+..+.+ |.+.|.+++|+| ++.+|++|+.|+.|++||++++.+ .. ...+|...|++++|
T Consensus 167 ~~wd~~~~---~~~~~~~~---h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~---~~--~~~~h~~~v~~v~~ 234 (340)
T 1got_B 167 ALWDIETG---QQTTTFTG---HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC---RQ--TFTGHESDINAICF 234 (340)
T ss_dssp EEEETTTT---EEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSE---EE--EECCCSSCEEEEEE
T ss_pred EEEECCCC---cEEEEEcC---CCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCee---EE--EEcCCcCCEEEEEE
Confidence 99999986 55666664 678899999999 999999999999999999998864 22 23569999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
+|++++|++++.||.|++||+++++.+...... ..+.++.|+|++ .+|++|+.|+.|++||+.+.....
T Consensus 235 ~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~g~~d~~i~vwd~~~~~~~~----- 306 (340)
T 1got_B 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG---RLLLAGYDDFNCNVWDALKADRAG----- 306 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred cCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC---CEEEEECCCCeEEEEEcccCcEee-----
Confidence 999999999999999999999988876654433 368899999988 799999999999999998776433
Q ss_pred ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
.+.+|...|++++|+|+|.+|++|+.||.|+|||
T Consensus 307 --~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 --VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 4468999999999999999999999999999997
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-41 Score=323.71 Aligned_cols=286 Identities=19% Similarity=0.296 Sum_probs=244.6
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.+|.+.|++++|+|+ +++|++|+.||.|++|++.+++....+ .+|...|.+++|+|++++|+++ +
T Consensus 18 ~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~----~ 84 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTI--------SGHKLGISDVAWSSDSNLLVSA----S 84 (312)
T ss_dssp EECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSEEEEE----E
T ss_pred EEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhh--------ccCCCceEEEEEcCCCCEEEEE----C
Confidence 45799999999999996 899999999999999999887765555 5899999999999999999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.|+.|++||+.++ .++..+.. |...|.+++|+| ++.+|++|+.|+.|++||+++++. ... ...|...|
T Consensus 85 ~d~~i~vwd~~~~---~~~~~~~~---~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~---~~~--~~~~~~~v 152 (312)
T 4ery_A 85 DDKTLKIWDVSSG---KCLKTLKG---HSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC---LKT--LPAHSDPV 152 (312)
T ss_dssp TTSEEEEEETTTC---CEEEEEEC---CSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE---EEE--ECCCSSCE
T ss_pred CCCEEEEEECCCC---cEEEEEcC---CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE---EEE--ecCCCCcE
Confidence 9999999999986 45666654 677899999999 999999999999999999998764 222 24588999
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
.+++|+|++.+|++++.||.|++||+++++.+... .....+..+.|+|++ .+|++++.|+.|++||+.++.....
T Consensus 153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS---SEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC---CEEEEEcCCCeEEEEECCCCcEEEE
Confidence 99999999999999999999999999998876553 334567889999987 6899999999999999998765432
Q ss_pred eeccccccCccccC---eEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE--
Q 009203 456 AFGWKQESSESQSA---LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS-- 530 (540)
Q Consensus 456 ~~~~~~~~~~~~~~---v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~-- 530 (540)
. .+|... +......+++.+|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+|++++|++++
T Consensus 230 ~-------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 230 Y-------TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--KEIVQKLQGHTDVVISTACHPTENIIASAALE 300 (312)
T ss_dssp E-------CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT--CCEEEEECCCSSCEEEEEECSSSSEEEEEECT
T ss_pred E-------EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--chhhhhhhccCCcEEEEeecCcCCceEEEEcc
Confidence 2 334332 22333346889999999999999999997 778889999999999999999999999997
Q ss_pred cCCcEEEEeC
Q 009203 531 SDLNIGLHKI 540 (540)
Q Consensus 531 ~dg~v~iw~l 540 (540)
.|++|++|+.
T Consensus 301 ~d~~i~~W~~ 310 (312)
T 4ery_A 301 NDKTIKLWKS 310 (312)
T ss_dssp TTCCEEEEEC
T ss_pred CCccEEEecC
Confidence 6999999984
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.7e-42 Score=327.47 Aligned_cols=289 Identities=15% Similarity=0.216 Sum_probs=238.3
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcc-eeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGA-SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
..+.||.+.|++++|+|+++.+|++|+.|++|++|++....... .....+ .+|...|.+++|+|++.+|+++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~----~~h~~~v~~~~~s~dg~~l~s~--- 83 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF----KGHSHIVQDCTLTADGAYALSA--- 83 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE----ECCSSCEEEEEECTTSSEEEEE---
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE----eCCcccEEEEEECCCCCEEEEE---
Confidence 35789999999999999756899999999999999987543211 111111 5899999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.|++|++||+.++ ..+..+.+ |.+.|.+++|+| ++.+|++|+.|++|++||++... .. ...+|..
T Consensus 84 -s~D~~v~~wd~~~~---~~~~~~~~---h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~----~~--~~~~h~~ 149 (319)
T 3frx_A 84 -SWDKTLRLWDVATG---ETYQRFVG---HKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQC----LA--TLLGHND 149 (319)
T ss_dssp -ETTSEEEEEETTTT---EEEEEEEC---CSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCE----EE--EECCCSS
T ss_pred -eCCCEEEEEECCCC---CeeEEEcc---CCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe----EE--EEeccCC
Confidence 99999999999986 55666665 678899999999 99999999999999999997543 22 3356999
Q ss_pred ceeEEEeccC------CCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 376 AVMGVAGMQQ------KQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 376 ~v~~l~~s~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
.|.++.|+|. +..+++++.|+.|++||+++++..... .+...+.++.|+|++ .+|++|+.||.|++||+.
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g---~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG---TLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS---SEEEEEETTCEEEEEETT
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECC
Confidence 9999999984 458999999999999999988776543 456788999999987 799999999999999999
Q ss_pred CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc--------cccccceeEEEEc
Q 009203 449 LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI--------RAHQKRVFKAVWH 520 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------~~h~~~i~~l~~s 520 (540)
+.+..... . +...|.+++|+|++.+|++++.++ +++|+++. ...+..+ ..|...+.+++|+
T Consensus 227 ~~~~~~~~-------~-~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s 295 (319)
T 3frx_A 227 AKKAMYTL-------S-AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDP--QYLVDDLRPEFAGYSKAAEPHAVSLAWS 295 (319)
T ss_dssp TTEEEEEE-------E-CCSCEEEEEECSSSSEEEEEETTE-EEEEEETT--EEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred CCcEEEEe-------c-CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCc--CeeeeccCccccccccCcCcceeEEEEC
Confidence 87654322 1 245799999999999999987655 99999986 3333222 2456689999999
Q ss_pred CCCCEEEEEEcCCcEEEEeC
Q 009203 521 YSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 521 ~~~~~l~s~~~dg~v~iw~l 540 (540)
|||++|++|+.||.|+|||+
T Consensus 296 pdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 296 ADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp TTSSEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEeecCceEEEEEE
Confidence 99999999999999999985
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.6e-41 Score=347.16 Aligned_cols=349 Identities=20% Similarity=0.255 Sum_probs=285.2
Q ss_pred eeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccceEEe---------cCCCCeEEEeccc
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPLVRT---------SASPATIHCHTSN 216 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~d~~i~~~~~~ 216 (540)
......|...|.++.+.|...+.+ +.+..+. +|.........+.+|...|..+++ ++.|+.+++|+..
T Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~-~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~ 251 (577)
T 2ymu_A 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 251 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSEEE-EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred eeeccCCCcceeeeeecCCCCEEEEEcCCCEEE-EEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 344557888899999998876655 4455444 444433444455677777766554 4568999999764
Q ss_pred ----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEE
Q 009203 217 ----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSA 292 (540)
Q Consensus 217 ----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~ 292 (540)
..+.+|...|++++|+|| +.+|++++.|+.|++|+... +....+ .+|...|.+++|+|++.+|+++
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~~-~~~~~~--------~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRNG-QLLQTL--------TGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTS-CEEEEE--------CCCSSCEEEEEECTTSSEEEEE
T ss_pred CCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCCC-cEEEEE--------ecCCCCeEEEEECCCCCEEEEE
Confidence 457899999999999996 89999999999999999753 333333 5899999999999999999999
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
+.|+.|++||+... .+..+.. |...|.+++|+| ++.+|++|+.|+.|++||... +. ...+ .+
T Consensus 322 ----~~d~~i~~w~~~~~----~~~~~~~---~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~-~~---~~~~--~~ 383 (577)
T 2ymu_A 322 ----SDDKTVKLWNRNGQ----HLQTLTG---HSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG-QL---LQTL--TG 383 (577)
T ss_dssp ----ETTSCEEEEETTSC----EEEEECC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTC-CE---EEEE--EC
T ss_pred ----eCCCeEEEEeCCCC----eeEEEeC---CCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCC-CE---EEEe--cC
Confidence 99999999998743 3444544 567899999999 999999999999999999654 32 2223 45
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
|...|.+++|+|+|++|++++.|+.|++||.. ++.+.. ..+...+.++.|+|++ .+|++++.|+.|++||....
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~---~~l~~~~~d~~v~~w~~~~~- 458 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDD---QTIASASDDKTVKLWNRNGQ- 458 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTSC-
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCC---CEEEEEcCCCEEEEEECCCC-
Confidence 89999999999999999999999999999965 454443 4456788899999987 79999999999999997532
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
... .+.+|...|++++|+|+|++|++++.|+.|++||.. ++++..+.+|...|++++|+|+|++|++++.
T Consensus 459 ~~~-------~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~---~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 528 (577)
T 2ymu_A 459 LLQ-------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASASD 528 (577)
T ss_dssp EEE-------EEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT---SCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred EEE-------EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC---CCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC
Confidence 211 346788999999999999999999999999999965 6788899999999999999999999999999
Q ss_pred CCcEEEEeC
Q 009203 532 DLNIGLHKI 540 (540)
Q Consensus 532 dg~v~iw~l 540 (540)
||.|+|||+
T Consensus 529 dg~v~lwd~ 537 (577)
T 2ymu_A 529 DKTVKLWNR 537 (577)
T ss_dssp TSEEEEECT
T ss_pred cCEEEEEeC
Confidence 999999984
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-41 Score=334.99 Aligned_cols=296 Identities=16% Similarity=0.234 Sum_probs=240.8
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccccc----------CCCCCCCCceeEEEecCCCeEE
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDC----------LSPKHRRWPEDIAWHPQGNSLF 290 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~----------~~~~h~~~V~~~~~~~~~~~l~ 290 (540)
+|.+.|+|++|+|| |++||+|+ ++.++||++.+++....+...... ....+...|.+++|+|+|++|+
T Consensus 62 ~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 69999999999996 89999987 789999999988766555322100 0012334589999999999999
Q ss_pred EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 291 SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
++ +.|+.|++||+.++ ..+..+.+ |...|.+++|+| ++.+|++|+.|++|++||++++++ ...+
T Consensus 140 s~----~~d~~i~iwd~~~~---~~~~~~~~---h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~---~~~~-- 203 (393)
T 1erj_A 140 TG----AEDRLIRIWDIENR---KIVMILQG---HEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQC---SLTL-- 203 (393)
T ss_dssp EE----ETTSCEEEEETTTT---EEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE---EEEE--
T ss_pred EE----cCCCeEEEEECCCC---cEEEEEcc---CCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCee---EEEE--
Confidence 99 99999999999876 55666665 677899999999 999999999999999999998874 1222
Q ss_pred ccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeee--------ccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203 371 NLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKH--------QIESKCMSVLPNPCDFNLFMVQTGTPGRQ 441 (540)
Q Consensus 371 ~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 441 (540)
.+...+.+++|+| ++.+|++++.||.|++||++++..+... .+...+.++.|+|++ .+|++|+.|+.
T Consensus 204 -~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g---~~l~s~s~d~~ 279 (393)
T 1erj_A 204 -SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG---QSVVSGSLDRS 279 (393)
T ss_dssp -ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS---SEEEEEETTSE
T ss_pred -EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC---CEEEEEeCCCE
Confidence 2667899999999 8999999999999999999998875543 345678999999987 68999999999
Q ss_pred EEEEECCCCcceeee-----eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE
Q 009203 442 LRLYDIRLRQTEIHA-----FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK 516 (540)
Q Consensus 442 v~i~d~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~ 516 (540)
|++||+++....... ......+.+|...|.+++|+|++.+|++|+.||.|++||+.+ +.++..+.+|.+.|.+
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~--~~~~~~l~~h~~~v~~ 357 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS--GNPLLMLQGHRNSVIS 357 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEE
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC--CeEEEEECCCCCCEEE
Confidence 999999864321110 001124467899999999999999999999999999999998 7788899999999999
Q ss_pred EEEcC------CCCEEEEEEcCCcEEEEeC
Q 009203 517 AVWHY------SHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 517 l~~s~------~~~~l~s~~~dg~v~iw~l 540 (540)
++|++ ++++|++|+.||+|+||++
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99986 6789999999999999985
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=324.02 Aligned_cols=305 Identities=16% Similarity=0.203 Sum_probs=228.0
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.+|.+.|++++|+|+ +||+|+.|++|+|||+..+... ...... ..+|...|.+++|+|++++|+++ +
T Consensus 9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~--~~~~~~--~~~h~~~v~~v~~sp~~~~las~----s 77 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFT--LIDVLD--ETAHKKAIRSVAWRPHTSLLAAG----S 77 (330)
T ss_dssp EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCE--EEEEEC--TTCCCSCEEEEEECTTSSEEEEE----E
T ss_pred eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeE--EEEEEe--cCCccCCEEEEEECCCCCEEEEE----e
Confidence 46799999999999984 9999999999999999875321 111110 12499999999999999999999 9
Q ss_pred CCCeEEEEecCCCC----CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203 298 GDSQISVLNLNKTK----GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 298 ~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
.|+.|++||+.... ....+..+.+ |.+.|.+++|+| ++.+|++|+.|++|++||++....... ......+|
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~---h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~-~~~~~~~h 152 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIEG---HENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYE-CISVLQEH 152 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC-------CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCE-EEEEECCC
T ss_pred CCCcEEEEEcccCcCccccceeEEEEcC---CCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeE-EEEEeccC
Confidence 99999999996431 1234555554 678899999999 999999999999999999954321111 11223569
Q ss_pred CcceeEEEeccCCCEEEEEeCCCeEEEEECCCC--Ceeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG--RADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
...|.+++|+|++.+|++++.|++|++||..++ +++... .+...+.++.|+|++.. .+|++|+.|++|++||+...
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCC
Confidence 999999999999999999999999999998876 344433 35678889999997322 58999999999999998754
Q ss_pred cce-eeeeccccccC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-ccccccc-ceeEEEEcC--CCC
Q 009203 451 QTE-IHAFGWKQESS-ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-SIRAHQK-RVFKAVWHY--SHP 524 (540)
Q Consensus 451 ~~~-~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~h~~-~i~~l~~s~--~~~ 524 (540)
... ...+.....+. .|...|.+++|++++ +|++++.||.|+|||...+....+. .+.+|.. .|++++|+| +++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~ 310 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT 310 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----C
T ss_pred CccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCce
Confidence 210 00000111233 388899999999765 8999999999999999863112332 3457876 899999999 689
Q ss_pred EEEEEEcCCcEEEEeC
Q 009203 525 LLISISSDLNIGLHKI 540 (540)
Q Consensus 525 ~l~s~~~dg~v~iw~l 540 (540)
+|++|+.||+|+||++
T Consensus 311 ~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 311 ILATGGDDGIVNFWSL 326 (330)
T ss_dssp CEEEEETTSEEEEEEC
T ss_pred EEEEecCCCcEEEEEe
Confidence 9999999999999986
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-40 Score=323.04 Aligned_cols=290 Identities=14% Similarity=0.139 Sum_probs=242.2
Q ss_pred CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccc
Q 009203 147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSL 221 (540)
Q Consensus 147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~ 221 (540)
...++.+|...|.++.+.|... .+++++.|++|++|+.. +.+..
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~-------------------------------~l~s~s~Dg~v~vWd~~~~~~~~~~~~ 104 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKR-------------------------------RIVSSSQDGKVIVWDSFTTNKEHAVTM 104 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSS-------------------------------EEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCC-------------------------------EEEEEeCCCeEEEEECCCCCcceEEec
Confidence 3456789999999999998743 57899999999999754 45778
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
|...|.+++|+|+ +.+|++|+.|+.+++|++.......... ......+|...|.+++|+|++..|+++ +.|++
T Consensus 105 ~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~----s~D~~ 177 (354)
T 2pbi_B 105 PCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAA--KKKSVAMHTNYLSACSFTNSDMQILTA----SGDGT 177 (354)
T ss_dssp SSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGG--GCEEEEECSSCEEEEEECSSSSEEEEE----ETTSE
T ss_pred CCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccc--cceeeeccCCcEEEEEEeCCCCEEEEE----eCCCc
Confidence 9999999999996 9999999999999999987543211110 000114789999999999999999999 99999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
|++||+.++ ..+..+.+ |...|.+++|+|. ++.+|++|+.||.|++||++++++ ... ..+|...|+++
T Consensus 178 v~lwd~~~~---~~~~~~~~---h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---~~~--~~~h~~~v~~v 246 (354)
T 2pbi_B 178 CALWDVESG---QLLQSFHG---HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---VQA--FETHESDVNSV 246 (354)
T ss_dssp EEEEETTTC---CEEEEEEC---CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE---EEE--ECCCSSCEEEE
T ss_pred EEEEeCCCC---eEEEEEcC---CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---EEE--ecCCCCCeEEE
Confidence 999999986 45666665 6678999999883 368999999999999999999875 222 35699999999
Q ss_pred EeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 381 AGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
+|+|++.+|++++.|++|++||++.+..+..... ...+.++.|+|++ .+|++|+.|+.|++||+.++....
T Consensus 247 ~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~l~~g~~d~~i~vwd~~~~~~~~--- 320 (354)
T 2pbi_B 247 RYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG---RLLFAGYNDYTINVWDVLKGSRVS--- 320 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS---SEEEEEETTSCEEEEETTTCSEEE---
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC---CEEEEEECCCcEEEEECCCCceEE---
Confidence 9999999999999999999999998876554433 2467789999987 799999999999999998776433
Q ss_pred ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
.+.+|...|++++|+|+|++|++|+.||.|+||+
T Consensus 321 ----~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 ----ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ----EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ----EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3468999999999999999999999999999996
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-41 Score=331.30 Aligned_cols=302 Identities=15% Similarity=0.167 Sum_probs=244.6
Q ss_pred CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccc
Q 009203 147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSL 221 (540)
Q Consensus 147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~ 221 (540)
....+.+|...|.++.+.|... .+++++.|++|++|+.. ..+.+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~-------------------------------~l~s~s~D~~v~iWd~~~~~~~~~~~~ 106 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKN-------------------------------WIVSASQDGRLIVWNALTSQKTHAIKL 106 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-------------------------------CEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EeecccccccEEEEEEEcCCCC-------------------------------EEEEEeCCCeEEEEECCCCccceEEec
Confidence 3456789999999999999753 57889999999999764 55889
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCCCCC
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDS 300 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~ 300 (540)
|...|.+++|+|+ +.+|++|+.|+.|+||++.......... .......+|.+.|.+++|+|++ ..|+++ +.|+
T Consensus 107 h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~gh~~~v~~~~~~~~~~~~l~s~----s~D~ 180 (380)
T 3iz6_a 107 HCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNM-PVSRVLTGHKGYASSCQYVPDQETRLITG----SGDQ 180 (380)
T ss_dssp CCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSS-TTCCBCCCCSSCCCCCBCCSSSSSCEEEE----CTTS
T ss_pred CCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCc-cceeeccCCCcceEEEEEecCCCCEEEEE----CCCC
Confidence 9999999999996 9999999999999999997643211100 0111126899999999999974 579999 9999
Q ss_pred eEEEEecCCCCCceeEEeecC--CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 301 QISVLNLNKTKGRACVTFLDD--KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
+|++||+.++ ..+..+.. ...|...|.+++|++.++.+|++|+.|++|++||++.... ......+|.+.|+
T Consensus 181 ~i~~wd~~~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~----~~~~~~~h~~~v~ 253 (380)
T 3iz6_a 181 TCVLWDVTTG---QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR----AVRTYHGHEGDIN 253 (380)
T ss_dssp CEEEECTTTC---CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC----CCEEECCCSSCCC
T ss_pred cEEEEEcCCC---cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc----ceEEECCcCCCeE
Confidence 9999999987 34444421 1346788999999876889999999999999999985431 1222356999999
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
+++|+|++.+|++++.||+|++||++++..+..+... ..+.+++|+|++ .+|++|+.||.|++||+.++
T Consensus 254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 254 SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG---RLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS---SEEEEECTTSCEEEEETTTC
T ss_pred EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC---CEEEEEECCCCEEEEECCCC
Confidence 9999999999999999999999999998876554321 236789999988 79999999999999999877
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
+...... ....+|.+.|++++|+|+|.+|++|+.||.|+||++..
T Consensus 331 ~~~~~~~---~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 331 EMVLNLG---TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CEEEEEC---CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ceEEEEe---cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 6543321 12357999999999999999999999999999999985
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=317.82 Aligned_cols=287 Identities=17% Similarity=0.188 Sum_probs=242.1
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhccc
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSSL 221 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~~ 221 (540)
....+|...|.++++.|..+ .--..+++++.|++|++|+.. ..+.|
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~---------------------------~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g 78 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKK---------------------------ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG 78 (321)
T ss_dssp EETTSSSSCEEEEEEC----------------------------------CEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred eecccCCCcEEEEEEecCCC---------------------------CCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc
Confidence 44568999999999987521 001257889999999999753 24789
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
|...|.+++|+|+ +.++++|+.|++|++||+.+++....+ ..|...+.+++|+|++++|+++ +.++.
T Consensus 79 h~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~~g----~~dg~ 145 (321)
T 3ow8_A 79 HQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSI--------DAGPVDAWTLAFSPDSQYLATG----THVGK 145 (321)
T ss_dssp CSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCTTCCCCEEECTTSSEEEEE----CTTSE
T ss_pred CCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEEE--------eCCCccEEEEEECCCCCEEEEE----cCCCc
Confidence 9999999999995 899999999999999999988766655 3667789999999999999999 99999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
|++||+.++ .....+.. +...|.+++|+| ++++|++|+.||.|++||+++++. ... ..+|...|.+++
T Consensus 146 v~i~~~~~~---~~~~~~~~---~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~---~~~--~~~h~~~v~~l~ 213 (321)
T 3ow8_A 146 VNIFGVESG---KKEYSLDT---RGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKL---LHT--LEGHAMPIRSLT 213 (321)
T ss_dssp EEEEETTTC---SEEEEEEC---SSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE---EEE--ECCCSSCCCEEE
T ss_pred EEEEEcCCC---ceeEEecC---CCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcE---EEE--EcccCCceeEEE
Confidence 999999986 33444443 456799999999 999999999999999999998864 222 356999999999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
|+|++++|++++.|+.|++||++++....... +...+.++.|+|++ .+|++++.|++|++||+.++.+..
T Consensus 214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~D~~v~iwd~~~~~~~~------ 284 (321)
T 3ow8_A 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD---THFVSSSSDKSVKVWDVGTRTCVH------ 284 (321)
T ss_dssp ECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEE------
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCEEEE------
Confidence 99999999999999999999999888766544 45678999999987 689999999999999999877543
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
.+.+|...|.+++|+|+|++|++++.||.|+|||..
T Consensus 285 -~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 285 -TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp -EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred -EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 345788999999999999999999999999999964
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.4e-40 Score=316.39 Aligned_cols=288 Identities=12% Similarity=0.199 Sum_probs=245.9
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
.+|.+.|++++|+|+ +++|++++ ||.|++||+.+++....+.... ..+|...|.+++|+|++++|+++ +.|
T Consensus 48 ~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~----~~d 118 (337)
T 1gxr_A 48 LNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLD---CLNRDNYIRSCKLLPDGCTLIVG----GEA 118 (337)
T ss_dssp ECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEE---CSCTTSBEEEEEECTTSSEEEEE----ESS
T ss_pred ccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeeccc---ccCCCCcEEEEEEcCCCCEEEEE----cCC
Confidence 489999999999995 89999998 9999999998876433332111 13688999999999999999999 999
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
+.|++||+.++.. .....+.. |...|.+++|+| ++.+|++++.||.|++||+++++. .. ....|...|.+
T Consensus 119 ~~i~~~d~~~~~~-~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~---~~--~~~~~~~~i~~ 188 (337)
T 1gxr_A 119 STLSIWDLAAPTP-RIKAELTS---SAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTL---VR--QFQGHTDGASC 188 (337)
T ss_dssp SEEEEEECCCC---EEEEEEEC---SSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE---EE--EECCCSSCEEE
T ss_pred CcEEEEECCCCCc-ceeeeccc---CCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCce---ee--eeecccCceEE
Confidence 9999999997632 23344443 567899999999 999999999999999999998764 22 22458899999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
++|+|++++|++++.||.|++||+++++.+........+.++.|+|++ .++++++.++.|++||+.+....
T Consensus 189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~~~i~~~~~~~~~~~------ 259 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG---EWLAVGMESSNVEVLHVNKPDKY------ 259 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTS---SEEEEEETTSCEEEEETTSSCEE------
T ss_pred EEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCC---CEEEEEcCCCcEEEEECCCCCeE------
Confidence 999999999999999999999999999988888888889999999987 68999999999999999977632
Q ss_pred ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+..|...|.+++|+|++++|++++.||.|++||+.+ ++.+. ...|...|.+++|+|++++|++++.||.|++|+
T Consensus 260 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~--~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 260 --QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--GASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp --EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred --EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC--CeEEE-EecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 2356888999999999999999999999999999997 45443 345788999999999999999999999999998
Q ss_pred C
Q 009203 540 I 540 (540)
Q Consensus 540 l 540 (540)
+
T Consensus 335 ~ 335 (337)
T 1gxr_A 335 V 335 (337)
T ss_dssp E
T ss_pred E
Confidence 5
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.9e-40 Score=313.51 Aligned_cols=292 Identities=14% Similarity=0.235 Sum_probs=242.7
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------h
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------H 217 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~ 217 (540)
..++.+|...|.++++.|..+ ..+++++.|++|++|+.. .
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~------------------------------~~l~s~s~D~~v~~W~~~~~~~~~~~~~~ 59 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQP------------------------------NLLLSASRDKTLISWKLTGDDQKFGVPVR 59 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCT------------------------------TEEEEEETTSEEEEEEEEEETTEEEEEEE
T ss_pred EEEEccccceEEEEEccCCCc------------------------------cEEEEecCCccEEEecCCCCCccccccce
Confidence 346779999999999988632 257889999999999653 3
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.+|...|++++|+|| +.+|++|+.|++|+|||+.+++....+ .+|...|.+++|+|++.+|+++ +
T Consensus 60 ~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~----s 126 (319)
T 3frx_A 60 SFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF--------VGHKSDVMSVDIDKKASMIISG----S 126 (319)
T ss_dssp EEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECTTSCEEEEE----E
T ss_pred EEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEE--------ccCCCcEEEEEEcCCCCEEEEE----e
Confidence 47899999999999996 999999999999999999998766655 5899999999999999999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-----CCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-----ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
.|+.|++||+.. .++..+.+ |...|.+++|+|. ++..|++++.|+.|++||+++.+. .....+
T Consensus 127 ~D~~i~vwd~~~----~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----~~~~~~ 194 (319)
T 3frx_A 127 RDKTIKVWTIKG----QCLATLLG---HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-----EADFIG 194 (319)
T ss_dssp TTSCEEEEETTS----CEEEEECC---CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE-----EEEECC
T ss_pred CCCeEEEEECCC----CeEEEEec---cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh-----heeecC
Confidence 999999999974 34555554 6778999999983 234899999999999999998763 223356
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
|...|.+++|+|+|++|++++.||.|++||+.+++.+........+.+++|+|++ .++++++. +.+++|++.....
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~---~~la~~~~-~~i~v~~~~~~~~ 270 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR---YWLAAATA-TGIKVFSLDPQYL 270 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSS---SEEEEEET-TEEEEEEETTEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCC---CEEEEEcC-CCcEEEEeCcCee
Confidence 9999999999999999999999999999999999988887778889999999987 57777664 5699999986543
Q ss_pred eeeeec-cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 453 EIHAFG-WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 453 ~~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
...... .......|...+.+++|+|||++|++|+.||.|+|||+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred eeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 222111 1112234667899999999999999999999999999975
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-39 Score=314.39 Aligned_cols=292 Identities=16% Similarity=0.231 Sum_probs=237.6
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.+|+||.+.|++|+|+|+++++||||+.||+|+|||+...+........ ...+|...|.+++|+|++++|+++
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~---~l~~h~~~V~~~~~s~dg~~l~s~---- 104 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR---ALRGHSHFVSDVVISSDGQFALSG---- 104 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE---EECCCSSCEEEEEECTTSSEEEEE----
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE---EEeCCCCCEEEEEECCCCCEEEEE----
Confidence 4578999999999999976889999999999999999876543322111 115899999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|+.|++|+.... ........ +...+..+.+++ ++.+|++|+.|+.+++||+..... ......+|...
T Consensus 105 ~~d~~i~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~----~~~~~~~~~~~ 173 (340)
T 4aow_A 105 SWDGTLRLWDLTTG---TTTRRFVG---HTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK----YTVQDESHSEW 173 (340)
T ss_dssp ETTSEEEEEETTTT---EEEEEEEC---CSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE----EEECSSSCSSC
T ss_pred cccccceEEeeccc---ceeeeecC---CCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce----EEEEeccccCc
Confidence 99999999999875 33333332 356688899999 999999999999999999987652 34444678999
Q ss_pred eeEEEeccCC--CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 377 VMGVAGMQQK--QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 377 v~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
+..++|++++ .++++++.|+.|++||+++++.+.... +...+.++.|+|++ .+|++|+.|+.|++||+++....
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG---SLCASGGKDGQAMLWDLNEGKHL 250 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTCEEEEEETTTTEEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC---CEEEEEeCCCeEEEEEeccCcee
Confidence 9999998764 578899999999999999988876643 45778899999987 69999999999999999987654
Q ss_pred eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc---------cccccccceeEEEEcCCCC
Q 009203 454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ---------SIRAHQKRVFKAVWHYSHP 524 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~---------~~~~h~~~i~~l~~s~~~~ 524 (540)
... .+...|.++.|+|++.++ +++.|+.|++||+.. ...+. ...+|...|++++|+|+|+
T Consensus 251 ~~~--------~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 251 YTL--------DGGDIINALCFSPNRYWL-CAATGPSIKIWDLEG--KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp EEE--------ECSSCEEEEEECSSSSEE-EEEETTEEEEEETTT--TEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred eee--------cCCceEEeeecCCCCcee-eccCCCEEEEEECCC--CeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 322 234579999999987655 555799999999986 33322 3346888999999999999
Q ss_pred EEEEEEcCCcEEEEeC
Q 009203 525 LLISISSDLNIGLHKI 540 (540)
Q Consensus 525 ~l~s~~~dg~v~iw~l 540 (540)
+|++|+.||.|+|||+
T Consensus 320 ~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQV 335 (340)
T ss_dssp EEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCEEEEEeC
Confidence 9999999999999985
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.9e-40 Score=315.82 Aligned_cols=250 Identities=13% Similarity=0.156 Sum_probs=206.4
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
..|...|++++|+|| + .|++|+.||+|+|||+.+++......... .+|.+.|++++|+|+|++|+++ +.|
T Consensus 79 ~~~~~~v~~~~~s~d-~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~----~~H~~~V~~v~~spdg~~l~sg----s~d 148 (344)
T 4gqb_B 79 VQTEAGVADLTWVGE-R-GILVASDSGAVELWELDENETLIVSKFCK----YEHDDIVSTVSVLSSGTQAVSG----SKD 148 (344)
T ss_dssp EEESSCEEEEEEETT-T-EEEEEETTSEEEEEEECTTSSCEEEEEEE----ECCSSCEEEEEECTTSSEEEEE----ETT
T ss_pred eccCCCEEEEEEeCC-C-eEEEEECCCEEEEEeccCCCceeEeeccc----cCCCCCEEEEEECCCCCEEEEE----eCC
Confidence 346688999999995 4 68899999999999999987665543322 4899999999999999999999 999
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
++|++||+.++ .++..+.+ |.+.|.+++|+|.+..+|++|+.|++|++||+++++. ...+....+...+.+
T Consensus 149 ~~i~iwd~~~~---~~~~~~~~---h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~~~~~~~ 219 (344)
T 4gqb_B 149 ICIKVWDLAQQ---VVLSSYRA---HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---ASQIGCSAPGYLPTS 219 (344)
T ss_dssp SCEEEEETTTT---EEEEEECC---CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---EEECC----CCCEEE
T ss_pred CeEEEEECCCC---cEEEEEcC---cCCceEEEEecCCCCCceeeeccccccccccccccce---eeeeecceeecccee
Confidence 99999999986 66777775 6788999999994446889999999999999999875 333333446678999
Q ss_pred EEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 380 VAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 380 l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
++|+|+ +++|++|+.||.|++||+++++++.... +...+.+++|+|++. .+|++|+.|++|+|||+.+++..
T Consensus 220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~--~~lasgs~D~~i~vwd~~~~~~~---- 293 (344)
T 4gqb_B 220 LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSV--PFLASLSEDCSLAVLDSSLSELF---- 293 (344)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSS--CCEEEEETTSCEEEECTTCCEEE----
T ss_pred eeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCcEE----
Confidence 999984 5788999999999999999998877654 467789999999863 37999999999999999877532
Q ss_pred ccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccC
Q 009203 458 GWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRY 498 (540)
Q Consensus 458 ~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~ 498 (540)
.+.+|...|++++|+|++. +|++|+.||+|++|++.+
T Consensus 294 ----~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 294 ----RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ----EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred ----EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 2368999999999999986 577999999999999986
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=318.36 Aligned_cols=298 Identities=15% Similarity=0.209 Sum_probs=239.6
Q ss_pred CeeeecCCcc-eeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc--------h
Q 009203 147 SSTQASPAAH-SIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN--------H 217 (540)
Q Consensus 147 ~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~--------~ 217 (540)
.+..+.+|.. .|.++++.|... .+++++.|++|++|+.. .
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~-------------------------------~las~~~D~~i~iw~~~~~~~~~~~~ 55 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGT-------------------------------LLASCGGDRRIRIWGTEGDSWICKSV 55 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSS-------------------------------CEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EeeeecCCCCCcEEEEEECCCCC-------------------------------EEEEEcCCCeEEEEEcCCCcceeeee
Confidence 3456778887 888999988743 57888999999999754 1
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
+..+|.+.|++++|+|+ +.+|++|+.|++|+||++..+.. ...+ .+|...|.+++|+|++++|+++
T Consensus 56 ~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~--------~~h~~~v~~v~~sp~~~~l~s~--- 123 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTL--------EGHENEVKSVAWAPSGNLLATC--- 123 (345)
T ss_dssp ECSSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEE--------CCCSSCEEEEEECTTSSEEEEE---
T ss_pred eccccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEc--------cCCCCCceEEEEeCCCCEEEEE---
Confidence 24799999999999996 99999999999999999987642 2222 5899999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.|+.|++||+.++....++..+.. |...|.+++|+| ++.+|++|+.|+.|++||++++.. .......+|..
T Consensus 124 -s~D~~v~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~ 195 (345)
T 3fm0_A 124 -SRDKSVWVWEVDEEDEYECVSVLNS---HTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDW---VCCATLEGHES 195 (345)
T ss_dssp -ETTSCEEEEEECTTSCEEEEEEECC---CCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS
T ss_pred -ECCCeEEEEECCCCCCeEEEEEecC---cCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC
Confidence 9999999999987655455666664 677899999999 999999999999999999987652 12233467999
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe---------------eeee--ccCccEEEEeecCCCCCceEEEEEcC
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA---------------DFKH--QIESKCMSVLPNPCDFNLFMVQTGTP 438 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (540)
.|++++|+|+|++|++++.|++|++||...... +... .+...+.++.|+|++ ..|++++.
T Consensus 196 ~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~l~s~~~ 272 (345)
T 3fm0_A 196 TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT---GALATACG 272 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT---CCEEEEET
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC---CEEEEEeC
Confidence 999999999999999999999999999643211 1111 145678899999987 58999999
Q ss_pred CCeEEEEECCCCcceee-eec-cccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccC
Q 009203 439 GRQLRLYDIRLRQTEIH-AFG-WKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 439 dg~v~i~d~~~~~~~~~-~~~-~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~ 498 (540)
|+.|++|+......... .+. ......+|...|++++|+|++ .+||+|+.||.|++|++..
T Consensus 273 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 273 DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 99999999876532110 000 011345799999999999998 5999999999999999997
No 29
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.8e-40 Score=324.63 Aligned_cols=295 Identities=12% Similarity=0.093 Sum_probs=246.2
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC------CcceeecccccCCCCCCCCceeEEEecC----C
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG------SGASLLSTTDCLSPKHRRWPEDIAWHPQ----G 286 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~------~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~ 286 (540)
.++.+|.+.|++++|+| .+|++|+.||.|+||++..++ ....+ .+|...|.+++|+|+ +
T Consensus 10 ~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH--------FVHKSGLHHVDVLQAIERDA 78 (397)
T ss_dssp EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE--------ECCTTCEEEEEEEEEEETTT
T ss_pred hhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEE--------ecCCCcEEEEEEecccccCC
Confidence 45789999999999997 599999999999999999877 33333 478999999999999 9
Q ss_pred ---CeEEEEeecCCCCCeEEEEecCCCCCc--eeEEeecCCCCc--ccceeEEEEe----CCCCCE-EEEEecCCcEEEE
Q 009203 287 ---NSLFSAHTADSGDSQISVLNLNKTKGR--ACVTFLDDKPHV--KGIINSIIFL----PWENPC-FATGGSDHAVVLW 354 (540)
Q Consensus 287 ---~~l~s~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~--~~~v~~~~~~----p~~~~~-l~s~~~dg~i~iw 354 (540)
.+|+++ +.|+.|++||+.++... .....+..+..+ ...|.+++|+ | ++.+ |++++.||.|++|
T Consensus 79 ~~~~~l~s~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 79 FELCLVATT----SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIW 153 (397)
T ss_dssp EEEEEEEEE----ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEE
T ss_pred ccccEEEEE----cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEE
Confidence 999999 99999999999876321 114555543222 5789999999 9 8999 9999999999999
Q ss_pred ecCC------CCCccccc--eeec-----ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------
Q 009203 355 SERD------AEDSWKPK--ALHR-----NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI------- 414 (540)
Q Consensus 355 d~~~------~~~~~~~~--~~~~-----~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------- 414 (540)
|+.+ +....-.. .+.. ..|...|.+++|+|++ +|++++.||.|++||+++++.+.....
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 9998 55422000 2221 4488899999999999 999999999999999999888777665
Q ss_pred CccEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCc-------------cccCeEEEEEcCC
Q 009203 415 ESKCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSE-------------SQSALINQSWSPD 478 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~sp~ 478 (540)
...+.++.|+|++ .+|++++.| +.|++||+.+++.... +.+ |...|.+++|+|+
T Consensus 233 ~~~i~~i~~~~~~---~~l~~~~~d~~~g~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 233 SNSIRSVKFSPQG---SLLAIAHDSNSFGCITLYETEFGERIGS-------LSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp CCCEEEEEECSST---TEEEEEEEETTEEEEEEEETTTCCEEEE-------ECBC--------CCBSBSSCEEEEEECSS
T ss_pred CCccceEEECCCC---CEEEEEecCCCCceEEEEECCCCcccce-------eccCcccccccccccccCCcEEEEEECCC
Confidence 7889999999987 689999999 9999999998765432 234 8899999999999
Q ss_pred CCEEEEEeCCCcEEEEeccCCCCccccccc------cc---------------ccceeEEEEcCCC----------CEEE
Q 009203 479 GLYITSGSADPVIHLFDIRYSANKPSQSIR------AH---------------QKRVFKAVWHYSH----------PLLI 527 (540)
Q Consensus 479 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~------~h---------------~~~i~~l~~s~~~----------~~l~ 527 (540)
+++|++++.||.|++||+.+ ++++..+. +| ...|++++|+|++ ++|+
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKT--KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp SSEEEEEETTSEEEEEETTT--TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CCEEEEEeCCCeEEEEEcCC--CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 99999999999999999997 67788887 77 8999999999998 7999
Q ss_pred EEEcCCcEEEEeC
Q 009203 528 SISSDLNIGLHKI 540 (540)
Q Consensus 528 s~~~dg~v~iw~l 540 (540)
+++.||.|++|++
T Consensus 381 s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 381 CVCLDRSIRWFRE 393 (397)
T ss_dssp EEETTTEEEEEEE
T ss_pred EecCCCcEEEEEc
Confidence 9999999999985
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-40 Score=325.07 Aligned_cols=318 Identities=14% Similarity=0.134 Sum_probs=261.9
Q ss_pred CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEecc----c--h---------
Q 009203 153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTS----N--H--------- 217 (540)
Q Consensus 153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~----~--~--------- 217 (540)
.|...|.++.+.|... ..+++++.|+.|++|+. . .
T Consensus 43 ~~~~~v~~~~~s~~~~------------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 92 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDE------------------------------SILAYGEKNSVARLARIVETDQEGKKYWKLTIIA 92 (425)
T ss_dssp EECSCCSEEEECSSCT------------------------------TEEEEEETBTEEEEEEEEEC------CEEEEEEE
T ss_pred eccCceEEEEECCCCC------------------------------cEEEEecCCceEEEEEEecccCCccccccccccc
Confidence 4557888888888742 14666777888888876 2 1
Q ss_pred ----hcc------cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC
Q 009203 218 ----VSS------LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN 287 (540)
Q Consensus 218 ----~~~------~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 287 (540)
.+. +|.+.|++++|+|+ +.+|++|+.||.|++|| .+++....+ .+|...|.+++|+|+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~~-~~~~~~~~~--------~~~~~~v~~~~~~~~~~ 162 (425)
T 1r5m_A 93 ELRHPFALSASSGKTTNQVTCLAWSHD-GNSIVTGVENGELRLWN-KTGALLNVL--------NFHRAPIVSVKWNKDGT 162 (425)
T ss_dssp EEECCCCCC------CBCEEEEEECTT-SSEEEEEETTSCEEEEE-TTSCEEEEE--------CCCCSCEEEEEECTTSS
T ss_pred cccccccccccccCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEe-CCCCeeeec--------cCCCccEEEEEECCCCC
Confidence 111 26889999999995 99999999999999999 444444444 57899999999999999
Q ss_pred eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccc---------------eeEEEEeCCCCCEEEEEecCCcEE
Q 009203 288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGI---------------INSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
+|+++ +.|+.|++||+.++ ..+..+.. +... +.+++|+| + ..+++++.||.|+
T Consensus 163 ~l~~~----~~d~~i~iwd~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~ 230 (425)
T 1r5m_A 163 HIISM----DVENVTILWNVISG---TVMQHFEL---KETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIF 230 (425)
T ss_dssp EEEEE----ETTCCEEEEETTTT---EEEEEECC---C---------------CCCBSCCEEEE-T-TEEEEECGGGCEE
T ss_pred EEEEE----ecCCeEEEEECCCC---cEEEEeec---cccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEE
Confidence 99999 99999999999876 44555544 2233 88999998 5 4688999999999
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCce
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 431 (540)
+||+.++.. ...+ ..|...|.+++|+|++++|++++.||.|++||+++++.+.... ....+.++.|+|++
T Consensus 231 ~~d~~~~~~---~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---- 301 (425)
T 1r5m_A 231 VYQITEKTP---TGKL--IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD---- 301 (425)
T ss_dssp EEETTCSSC---SEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT----
T ss_pred EEEcCCCce---eeee--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC----
Confidence 999998864 2222 4588999999999999999999999999999999888766654 56788999999976
Q ss_pred EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc---------
Q 009203 432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK--------- 502 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~--------- 502 (540)
++++++.|+.|++||+.++.... .+..|...|.+++|+|++++|++++.||.|++||+.+ ..
T Consensus 302 ~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~ 372 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQNTLLA-------LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK--LNSKSRSLYGN 372 (425)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE-------EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH--HHC--------
T ss_pred EEEEEeCCCcEEEEECCCCcEeE-------ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC--Cccceeeeecc
Confidence 89999999999999999876433 3346788999999999999999999999999999987 44
Q ss_pred -----------cccccccccc--ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 503 -----------PSQSIRAHQK--RVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 503 -----------~~~~~~~h~~--~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++..+.+|.. .|++++|+|++++|++++.||.|++|++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 373 RDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred cccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 6788888876 9999999999999999999999999996
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.1e-40 Score=321.39 Aligned_cols=294 Identities=14% Similarity=0.118 Sum_probs=239.7
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~ 296 (540)
.+.+|.+.|++++|+|++..+|++|+.||.|+|||+.+++....+.. .+|...|.+++|+| ++.+|+++
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~---- 137 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------MGPGDAITGMKFNQFNTNQLFVS---- 137 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------CSTTCBEEEEEEETTEEEEEEEE----
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------CCcCCceeEEEeCCCCCCEEEEE----
Confidence 35799999999999996338999999999999999998775544421 37999999999999 77899999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|+.|++||+.+ ..+..+.....+...|.+++|+| ++.+|++|+.|+.|++||++ ++. ... ...|...
T Consensus 138 ~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~---~~~--~~~h~~~ 206 (383)
T 3ei3_B 138 SIRGATTLRDFSG----SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHE---IFK--EKLHKAK 206 (383)
T ss_dssp ETTTEEEEEETTS----CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCE---EEE--EECSSSC
T ss_pred eCCCEEEEEECCC----CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCE---EEE--eccCCCc
Confidence 9999999999985 33444544444567899999999 99999999999999999995 332 223 3469999
Q ss_pred eeEEEeccCCC-EEEEEeCCCeEEEEECCC----CCeeeeeccCccEEEEeecC-CCCCceEEEEEcCCCeEEEEECCCC
Q 009203 377 VMGVAGMQQKQ-IVLSAGADKRIIGFDAGV----GRADFKHQIESKCMSVLPNP-CDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 377 v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
|.+++|+|++. +|++++.|+.|++||+++ +..+........+.++.|+| ++ .+|++++.|+.|++||++++
T Consensus 207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDS---TKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTS---CEEEEEESSSEEEEEETTBT
T ss_pred EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCC---CEEEEEcCCCcEEEEECCCC
Confidence 99999999998 999999999999999998 55666667788999999999 76 68999999999999999988
Q ss_pred cceeeeeccccccCcccc----------CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc--cccceeEEE
Q 009203 451 QTEIHAFGWKQESSESQS----------ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA--HQKRVFKAV 518 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~----------~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--h~~~i~~l~ 518 (540)
.......++......|.. .+..++|+|+|++ +|+.||.|+|||+.+ ++.+..+.+ |...+..++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~--~~~~~~l~~~~~~~~~~~~~ 359 (383)
T 3ei3_B 284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS--GGLVHQLRDPNAAGIISLNK 359 (383)
T ss_dssp TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT--CCEEEEECBTTBCSCCCEEE
T ss_pred ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC--CceeeeecCCCCCceEEEEE
Confidence 765444333222223333 3444666677666 777999999999998 677888876 567788889
Q ss_pred EcCCCCEEEEEEcCCcEEEEeC
Q 009203 519 WHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 519 ~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|+|++++|++|+ ||.|+|||+
T Consensus 360 ~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 360 FSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECTTSSEEEEEE-TTEEEEEEC
T ss_pred EecCccEEEEec-CCcEEEEec
Confidence 999999999997 999999996
No 32
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.9e-39 Score=305.73 Aligned_cols=287 Identities=15% Similarity=0.174 Sum_probs=241.6
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccc
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLH 222 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h 222 (540)
...+.+|...|.++++.|..+ .+++++.|++|++|+.. ..+.+|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~-------------------------------~l~s~~~dg~v~lWd~~~~~~~~~~~~~ 54 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEP-------------------------------WVLTTLYSGRVELWNYETQVEVRSIQVT 54 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSS-------------------------------EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEeecCCCCceEEEEECCCCC-------------------------------EEEEEcCCCcEEEEECCCCceeEEeecc
Confidence 456778999999999999854 57788899999999765 457899
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
..+|.+++|+|+ +++|++|+.|++|++||+.+++....+ .+|...|.+++|+|++++|+++ +.|++|
T Consensus 55 ~~~v~~~~~~~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~sg----s~D~~v 121 (304)
T 2ynn_A 55 ETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDF--------EAHPDYIRSIAVHPTKPYVLSG----SDDLTV 121 (304)
T ss_dssp SSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECSSSSEEEEE----ETTSCE
T ss_pred CCcEEEEEEeCC-CCEEEEECCCCEEEEEECCCCcEEEEE--------eCCCCcEEEEEEcCCCCEEEEE----CCCCeE
Confidence 999999999995 999999999999999999998876666 5899999999999999999999 999999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
++||+.++ ......+.+ |...|.+++|+|.++.+|++|+.|++|++||++.+.. ......+|...+..+.|
T Consensus 122 ~lWd~~~~--~~~~~~~~~---h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~ 192 (304)
T 2ynn_A 122 KLWNWENN--WALEQTFEG---HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQERGVNYVDY 192 (304)
T ss_dssp EEEEGGGT--TEEEEEECC---CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC----SEEEECCCTTCEEEEEE
T ss_pred EEEECCCC--cchhhhhcc---cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc----cceeccCCcCcEEEEEE
Confidence 99999875 344555654 6788999999996788999999999999999988764 22222456778999999
Q ss_pred cc--CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 383 MQ--QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 383 s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
+| ++.+|++++.|+.|++||+++++++.... +...+.++.|+|++ .+|++|+.||+|++||+.+.+...
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~Dg~i~iWd~~~~~~~~----- 264 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL---PIIISGSEDGTLKIWNSSTYKVEK----- 264 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCCEEE-----
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC---CEEEEEcCCCeEEEEECCCCceee-----
Confidence 76 77899999999999999999998877654 45778899999987 689999999999999999877533
Q ss_pred ccccCccccCeEEEEEcCCCC--EEEEEeCCCcEEEEeccC
Q 009203 460 KQESSESQSALINQSWSPDGL--YITSGSADPVIHLFDIRY 498 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~--~l~sg~~dg~i~iwd~~~ 498 (540)
.+..|...+.+++|+|++. ++++|+.|| +.+|++..
T Consensus 265 --~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 265 --TLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp --EECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred --eccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 3456778999999999875 577877666 77888764
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-41 Score=332.81 Aligned_cols=314 Identities=11% Similarity=0.111 Sum_probs=246.7
Q ss_pred CCCCeEEEeccc-------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203 205 ASPATIHCHTSN-------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP 277 (540)
Q Consensus 205 ~~d~~i~~~~~~-------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V 277 (540)
+.|+.|++|+.. .....|...|++++|+|+ +.+|++|+.||.|++|++............. .+|...|
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~----~~h~~~v 116 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARF----SNHSSSV 116 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEEC----CCSSSCC
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhc----cCCccce
Confidence 789999999764 113468999999999996 8999999999999999998732111111111 5899999
Q ss_pred eeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCce---eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 278 EDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRA---CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 278 ~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
.+++|+|+ +.+|+++ +.|+.|++||+.++.... ....+.....|...|.+++|+|..+.+|++++.||.|++
T Consensus 117 ~~~~~~~~~~~~l~s~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 192 (416)
T 2pm9_A 117 KTVKFNAKQDNVLASG----GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192 (416)
T ss_dssp CEEEECSSSTTBEEEE----CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred EEEEEcCCCCCEEEEE----cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence 99999998 8899999 999999999999764100 111222222467889999999933889999999999999
Q ss_pred EecCCCCCccccceeec----ccCCcceeEEEeccCC-CEEEEEeCCC---eEEEEECCCC-Ceeeee--ccCccEEEEe
Q 009203 354 WSERDAEDSWKPKALHR----NLHSSAVMGVAGMQQK-QIVLSAGADK---RIIGFDAGVG-RADFKH--QIESKCMSVL 422 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~--~~~~~~~~~~ 422 (540)
||+++++.. ..+.. .+|...|.+++|+|++ .++++++.|+ .|++||++++ ..+... .+...+.++.
T Consensus 193 wd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 193 WDLKAKKEV---IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD 269 (416)
T ss_dssp EETTTTEEE---EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE
T ss_pred EECCCCCcc---eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE
Confidence 999987642 22221 1127889999999997 6899999998 9999999986 444444 3667899999
Q ss_pred ecC-CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCC
Q 009203 423 PNP-CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSA 500 (540)
Q Consensus 423 ~~~-~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~ 500 (540)
|+| ++ .+|++++.|+.|++||+.+++... .+.+|...|++++|+|++ .+|++++.||.|++||+....
T Consensus 270 ~s~~~~---~~l~s~~~dg~v~~wd~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 270 WCHQDE---HLLLSSGRDNTVLLWNPESAEQLS-------QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp ECSSCS---SCEEEEESSSEEEEECSSSCCEEE-------EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred eCCCCC---CeEEEEeCCCCEEEeeCCCCccce-------eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 999 55 689999999999999999876533 345788899999999999 899999999999999998732
Q ss_pred Ccccc---------------------------------cccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 501 NKPSQ---------------------------------SIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 501 ~~~~~---------------------------------~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..... ....|..++.+++|+|+|++|++++.||.|+||++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 340 NTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp CSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred CCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 11110 01116678889999999999999999999999986
No 34
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.7e-40 Score=320.35 Aligned_cols=302 Identities=15% Similarity=0.162 Sum_probs=240.7
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeC---CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEE
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSAL---DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFS 291 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s 291 (540)
++.+|.+.|++++|+|++..++++|+. ||.|+|||+.+++...... .+|...|.+++|+|+ +.+|++
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-------IEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-------EEESSCEEEEECTTCCTTTCCEEE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-------ecccCcEEEEEEcCCCCCCceEEE
Confidence 457899999999999974467777776 9999999999876433322 267889999999998 699999
Q ss_pred EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE------eCCCCCEEEEEecCCcEEEEecCCCCCcccc
Q 009203 292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF------LPWENPCFATGGSDHAVVLWSERDAEDSWKP 365 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 365 (540)
+ +.|+.|++||+.++. ..+..+.. |...|.+++| +| ++.+|++++.||.|++||+.++... .
T Consensus 86 ~----~~dg~i~iwd~~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~--~ 153 (357)
T 3i2n_A 86 G----DFGGNLHIWNLEAPE--MPVYSVKG---HKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDP--V 153 (357)
T ss_dssp E----ETTSCEEEECTTSCS--SCSEEECC---CSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSC--S
T ss_pred e----cCCCeEEEEeCCCCC--ccEEEEEe---cccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCc--c
Confidence 9 999999999999863 24555554 6788999965 57 8999999999999999999987621 1
Q ss_pred ceeec--ccCCcceeEEE----eccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC
Q 009203 366 KALHR--NLHSSAVMGVA----GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG 439 (540)
Q Consensus 366 ~~~~~--~~~~~~v~~l~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 439 (540)
..+.. ..+...+.+++ |+|++.+|++++.||.|++||+++++..........+.++.|+|.+..+.++++++.|
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 233 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE 233 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence 22211 11234888998 7889999999999999999999999887777778899999999932112689999999
Q ss_pred CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccCCCC-----------------
Q 009203 440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRYSAN----------------- 501 (540)
Q Consensus 440 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~~~~----------------- 501 (540)
|.|++||+++........ .....+|...|++++|+|++. +|++|+.||.|++||+.....
T Consensus 234 g~i~i~d~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~ 311 (357)
T 3i2n_A 234 GKFHVFDMRTQHPTKGFA--SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV 311 (357)
T ss_dssp TEEEEEEEEEEETTTEEE--EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred CeEEEEeCcCCCccccee--eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence 999999998755322111 002347899999999999998 899999999999999986321
Q ss_pred cccccccccccceeEEEEcCCCCEEE-EEEcCCcEEEEeC
Q 009203 502 KPSQSIRAHQKRVFKAVWHYSHPLLI-SISSDLNIGLHKI 540 (540)
Q Consensus 502 ~~~~~~~~h~~~i~~l~~s~~~~~l~-s~~~dg~v~iw~l 540 (540)
..+..+.+|...|++++|+|++++|+ +++.||.|+|||+
T Consensus 312 ~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 312 SLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred ceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 24667788999999999999999988 8999999999985
No 35
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.1e-39 Score=343.28 Aligned_cols=291 Identities=16% Similarity=0.202 Sum_probs=237.8
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.+|.+.|++|+|+|+++.+|+||+.|++|+||++............ ...+|...|.+++|+|++++|+++ +
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~---~~~~h~~~v~~v~~s~~g~~l~sg----s 449 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR---RLTGHSHFVEDVVLSSDGQFALSG----S 449 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEE---EEECCSSCEEEEEECTTSSEEEEE----E
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccc---eecCCCCcEEEEEECCCCCEEEEE----e
Confidence 468999999999999977789999999999999999875432111100 015899999999999999999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee--ecccCCc
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL--HRNLHSS 375 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~ 375 (540)
.|+.|++||+.++ .....+.+ |...|.+++|+| ++.+|++|+.|++|++||+..... ..+ ...+|..
T Consensus 450 ~Dg~v~vwd~~~~---~~~~~~~~---h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~----~~~~~~~~~h~~ 518 (694)
T 3dm0_A 450 WDGELRLWDLAAG---VSTRRFVG---HTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECK----YTISEGGEGHRD 518 (694)
T ss_dssp TTSEEEEEETTTT---EEEEEEEC---CSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE----EEECSSTTSCSS
T ss_pred CCCcEEEEECCCC---cceeEEeC---CCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcc----eeeccCCCCCCC
Confidence 9999999999986 55666654 678899999999 999999999999999999865432 111 1246889
Q ss_pred ceeEEEeccCC--CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 376 AVMGVAGMQQK--QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 376 ~v~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
.|.+++|+|++ ..|++++.|+.|++||+++++...... +...+.++.|+|++ .+|++|+.||.|++||+.++..
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg---~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG---SLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSBCEEEETTTTEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCce
Confidence 99999999986 589999999999999999988766543 56788999999987 7999999999999999998775
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-------------------ccc
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-------------------QKR 513 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-------------------~~~ 513 (540)
... + .+...|.+++|+|++.+|++++ ++.|+|||+.+ +..+..+..+ ...
T Consensus 596 ~~~-------~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 596 LYS-------L-EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES--KSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp EEC-------C-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT--TEEEEEECCCCC----------------CCCC
T ss_pred EEE-------e-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC--CCChhhhccccccccccccccccccCCceeEE
Confidence 332 1 2345799999999999888876 55699999997 4544443321 123
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 514 VFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 514 i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+++++|+|+|++|++|+.||+|+||++
T Consensus 665 ~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred eeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 789999999999999999999999996
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=311.00 Aligned_cols=288 Identities=14% Similarity=0.103 Sum_probs=246.5
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.+++....+ .+|...|.+++|+|++++|+++ +.
T Consensus 28 l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~----~~ 94 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTL--------DGHTGTIWSIDVDCFTKYCVTG----SA 94 (369)
T ss_dssp EECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSEEEEE----ET
T ss_pred EEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhh--------hhcCCcEEEEEEcCCCCEEEEE----eC
Confidence 4799999999999996 999999999999999999988776666 5899999999999999999999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEEecCCCCCccccce------
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLWSERDAEDSWKPKA------ 367 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~------ 367 (540)
|+.|++||+.++ ..+..+. +...|.+++|+| ++.+|++++.+ +.|++||+...........
T Consensus 95 dg~i~iwd~~~~---~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 95 DYSIKLWDVSNG---QCVATWK----SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp TTEEEEEETTTC---CEEEEEE----CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred CCeEEEEECCCC---cEEEEee----cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 999999999986 3444444 356799999999 99999999998 9999999987654221111
Q ss_pred eecccCCc--ceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203 368 LHRNLHSS--AVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLR 443 (540)
Q Consensus 368 ~~~~~~~~--~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 443 (540)
.....|.. .+.+++|+|++++|++++.||.|++||+++ +..+.... ....+.++.|+|++ .+|++++.|+.|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~ 243 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL---TYFITSSRDTNSF 243 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC---CEEEEecCCceEE
Confidence 11123444 899999999999999999999999999998 55554443 56788999999987 6899999999999
Q ss_pred EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC--------------cEEEEeccCCCCcccccccc
Q 009203 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP--------------VIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg--------------~i~iwd~~~~~~~~~~~~~~ 509 (540)
+||+.++...... .+...+.+++|+|++.++++++.++ .+++||+.+ ++.+..+.+
T Consensus 244 v~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~ 313 (369)
T 3zwl_B 244 LVDVSTLQVLKKY--------ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF--EEEIGRVQG 313 (369)
T ss_dssp EEETTTCCEEEEE--------ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT--CCEEEEEEC
T ss_pred EEECCCCceeeee--------cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC--Ccchhheec
Confidence 9999987754332 1567899999999999999999988 899999998 788889999
Q ss_pred cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|...|++++|+|++++|++++.||.|+||++
T Consensus 314 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 314 HFGPLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9999999999999999999999999999985
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.3e-40 Score=319.74 Aligned_cols=300 Identities=15% Similarity=0.158 Sum_probs=242.1
Q ss_pred hcccccCceEEEEEecC---CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC----CCeEE
Q 009203 218 VSSLHKRKLRSLSLNPV---NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ----GNSLF 290 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd---~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~ 290 (540)
+..+|.+.|++++|+|+ +..++++++.++.|++||+.+++....+..... ..|...|.+++|+|+ +.+|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD---ADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC---SCTTCCEEEEEEEECTTTCCEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc---cCCCCcEEEEEeccCCCCCCCEEE
Confidence 34699999999999983 355666666677999999998776655543322 357889999999999 66899
Q ss_pred EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee-
Q 009203 291 SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH- 369 (540)
Q Consensus 291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 369 (540)
++ +.||.|++||+.++ ..+..+.. |...|.+++|+|.++.+|++|+.||.|++||+++++.. ..+.
T Consensus 90 ~~----~~dg~i~v~d~~~~---~~~~~~~~---~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~ 156 (366)
T 3k26_A 90 VA----GSRGIIRIINPITM---QCIKHYVG---HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV---AIFGG 156 (366)
T ss_dssp EE----ETTCEEEEECTTTC---CEEEEEES---CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE---EEECS
T ss_pred Ee----cCCCEEEEEEchhc---eEeeeecC---CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE---EEecc
Confidence 99 99999999999976 44555654 67889999999977899999999999999999987642 2221
Q ss_pred cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-----------------------------cCccEEE
Q 009203 370 RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-----------------------------IESKCMS 420 (540)
Q Consensus 370 ~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------------------~~~~~~~ 420 (540)
...|...|.+++|+|++.+|++++.||.|++||+++++...... +...+.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 14699999999999999999999999999999999876533221 4566778
Q ss_pred EeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee-------ccccccCccccCeEEEEEcCC--CCEEEEEeCCCcE
Q 009203 421 VLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF-------GWKQESSESQSALINQSWSPD--GLYITSGSADPVI 491 (540)
Q Consensus 421 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp~--g~~l~sg~~dg~i 491 (540)
+.|++ .++++++.|+.|++||+.+........ .....+..|...|++++|+|+ +++|++|+.||.|
T Consensus 237 ~~~~~-----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i 311 (366)
T 3k26_A 237 VRWLG-----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 311 (366)
T ss_dssp EEEET-----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred EEEcC-----CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence 88872 489999999999999998765421111 012245678889999999999 9999999999999
Q ss_pred EEEeccCCCCccc----cccccc--ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 492 HLFDIRYSANKPS----QSIRAH--QKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 492 ~iwd~~~~~~~~~----~~~~~h--~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++||+.. +.+. ..+.+| ...|++++|+|++++|++++.||.|+|||+
T Consensus 312 ~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 312 YVWDLEV--EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEECCS--SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEECCC--CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 9999997 4433 366677 789999999999999999999999999996
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-38 Score=307.75 Aligned_cols=298 Identities=15% Similarity=0.221 Sum_probs=233.3
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----------
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------- 216 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------- 216 (540)
...+.+|...|.++.+.+... ....-..+++++.|++|++|+..
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~-------------------------~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~ 68 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQK-------------------------ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP 68 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSS-------------------------TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEE
T ss_pred eeeeccchhhhhheeeEEEee-------------------------cCCCCCEEEEEcCCCEEEEEECCcCCcccccccc
Confidence 345678999999998833210 00011257889999999999753
Q ss_pred -hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 217 -HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 217 -~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
..+.+|...|++++|+|+ +.+|++|+.|++|+|||+.+++....+ .+|...|.+++|+|++++|+++
T Consensus 69 ~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~~~~~~--------~~h~~~v~~v~~sp~~~~l~s~--- 136 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRF--------VGHQSEVYSVAFSPDNRQILSA--- 136 (343)
T ss_dssp EEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSCEEEEE--------ECCCSCEEEEEECSSTTEEEEE---
T ss_pred cchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEEE--------cCCCCcEEEEEECCCCCEEEEE---
Confidence 347899999999999995 899999999999999999988766655 5899999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC----------CEEEEEecCCcEEEEecCCCCCcccc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN----------PCFATGGSDHAVVLWSERDAEDSWKP 365 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~ 365 (540)
+.|+.|++||+... ..........|...|.+++|+| ++ .+|++++.|+.|++||... .
T Consensus 137 -~~d~~i~~wd~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~----- 204 (343)
T 2xzm_R 137 -GAEREIKLWNILGE----CKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q----- 204 (343)
T ss_dssp -ETTSCEEEEESSSC----EEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E-----
T ss_pred -cCCCEEEEEeccCC----ceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC-c-----
Confidence 99999999999732 2333333334678899999999 65 7899999999999999543 2
Q ss_pred ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEE
Q 009203 366 KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRL 444 (540)
Q Consensus 366 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i 444 (540)
......+|...|.+++|+|+|++|++|+.||.|++||+.. ............+.+++|+|++ .++++ +.|+.|++
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~~la~-~~d~~v~i 280 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKL---QWVAV-GTDQGVKI 280 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSS---CEEEE-EESSCEEE
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCC---CEEEE-ECCCCEEE
Confidence 1223356999999999999999999999999999999954 4444444456678999999987 45554 46888999
Q ss_pred EECCCCcceee-eecc-----ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 445 YDIRLRQTEIH-AFGW-----KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 445 ~d~~~~~~~~~-~~~~-----~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
||+.+...... .+.. .....+|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus 281 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 281 FNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 99987653221 1110 011236888999999999999999999999999999875
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-39 Score=308.66 Aligned_cols=294 Identities=14% Similarity=0.223 Sum_probs=221.6
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhc-
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVS- 219 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~- 219 (540)
...+.+|...|.++.+.|. .+++++.|++|++|+.. .++
T Consensus 7 ~~~~~~h~~~v~~~~~s~~---------------------------------~las~~~D~~i~lw~~~~~~~~~~~~~~ 53 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG---------------------------------ILATGSTDRKIKLVSVKYDDFTLIDVLD 53 (330)
T ss_dssp EEEEECCSSCEEEEEEETT---------------------------------EEEEEESSSCEEEEECSSSCCEEEEEEC
T ss_pred ceeeccCCCceeeeccCCC---------------------------------EEEEEcCCCEEEEEEecCCCeEEEEEEe
Confidence 4566788888888888765 47888999999999754 123
Q ss_pred cc-ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC---cceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 220 SL-HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS---GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 220 ~~-h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
.+ |.+.|++|+|+|+ +.+|++|+.|++|+|||+..... ....... ..+|...|.+++|+|+|++|+++
T Consensus 54 ~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~----~~~h~~~V~~v~~sp~g~~las~--- 125 (330)
T 2hes_X 54 ETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI----IEGHENEVKGVAWSNDGYYLATC--- 125 (330)
T ss_dssp TTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEE----EC----CEEEEEECTTSCEEEEE---
T ss_pred cCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEE----EcCCCCcEEEEEECCCCCEEEEE---
Confidence 44 9999999999996 89999999999999999864321 0111111 15899999999999999999999
Q ss_pred CCCCCeEEEEecCCC-CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 296 DSGDSQISVLNLNKT-KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
+.|++|++||+... ....++..+.+ |...|.+++|+| ++.+|++|+.|++|++||..++.. .......+|.
T Consensus 126 -s~D~~v~iwd~~~~~~~~~~~~~~~~---h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~---~~~~~~~~h~ 197 (330)
T 2hes_X 126 -SRDKSVWIWETDESGEEYECISVLQE---HSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW---ECVAVLNGHE 197 (330)
T ss_dssp -ETTSCEEEEECCTTCCCCEEEEEECC---CSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE---EEEEEECCCS
T ss_pred -eCCCEEEEEeccCCCCCeEEEEEecc---CCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCe---eEEEEccCCC
Confidence 99999999999533 23355666665 678899999999 999999999999999999876531 1122335799
Q ss_pred cceeEEEeccC--CCEEEEEeCCCeEEEEECCCCC--------eeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203 375 SAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGVGR--------ADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQL 442 (540)
Q Consensus 375 ~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v 442 (540)
..|.+++|+|+ +.+|++++.|++|++||++.+. ..... .+...+.++.|++.+ +|++++.||.|
T Consensus 198 ~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~----~l~s~~~dg~v 273 (330)
T 2hes_X 198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG----LIASVGADGVL 273 (330)
T ss_dssp SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS----CEEEEETTSCE
T ss_pred CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC----EEEEEeCCCEE
Confidence 99999999998 6789999999999999987542 22222 245678899999654 79999999999
Q ss_pred EEEECCCCcceeeeeccccccCcccc-CeEEEEEcC--CCCEEEEEeCCCcEEEEeccC
Q 009203 443 RLYDIRLRQTEIHAFGWKQESSESQS-ALINQSWSP--DGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 443 ~i~d~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp--~g~~l~sg~~dg~i~iwd~~~ 498 (540)
++||..++...... ....+|.. .|.+++|+| ++++|++|+.||.|+|||+..
T Consensus 274 ~iw~~~~~~~~~~~----~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 274 AVYEEVDGEWKVFA----KRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEETTEEEEEE----EESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEcCCCceEEEe----ccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99998765321110 12346776 899999999 789999999999999999874
No 40
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-38 Score=309.50 Aligned_cols=286 Identities=12% Similarity=0.151 Sum_probs=226.1
Q ss_pred CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCC------CCeEEEeccc---------h
Q 009203 153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSAS------PATIHCHTSN---------H 217 (540)
Q Consensus 153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------d~~i~~~~~~---------~ 217 (540)
.|...|+++++.|... .+++++. |+++++|+.. .
T Consensus 40 ~H~~~V~~v~fSpDG~-------------------------------~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~ 88 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-------------------------------LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT 88 (357)
T ss_dssp CCCSEEEEEEECSSSC-------------------------------EEEEEECSSSSSCCEEEEEESSCC---CGGGCS
T ss_pred cccCCEEEEEECCCCC-------------------------------EEEEEcCCCCccccCeEEEEECCCCCcceeEec
Confidence 6889999999999753 3445554 6678888542 1
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
...+|...|++++|+|+ +. +++++.||+|+|||+.+++......... .+|...|++++|+|++++|+++ +
T Consensus 89 ~~~~~~~~V~~~~~s~d-~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~----~~h~~~V~~v~~spdg~~l~sg----s 158 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSE-KG-ILVASDSGAVELWEILEKESLLVNKFAK----YEHDDIVKTLSVFSDGTQAVSG----G 158 (357)
T ss_dssp EEEECSSCEEEEEEETT-TE-EEEEETTSCEEEC--------CCCCEEE----CCCSSCEEEEEECSSSSEEEEE----E
T ss_pred ccCCCCCCEEEEEEcCC-CC-EEEEECCCEEEEeeccccceeEEEeecc----CCCCCCEEEEEECCCCCEEEEE----e
Confidence 24589999999999996 65 5567889999999998876543322111 4899999999999999999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.|+.|++||+.++ ..+..+.. |...|.+++|+|....++++++.||.|++||+++++. ...+....+...+
T Consensus 159 ~dg~v~iwd~~~~---~~~~~~~~---h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~---~~~~~~~~~~~~v 229 (357)
T 4g56_B 159 KDFSVKVWDLSQK---AVLKSYNA---HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP---ATRIDFCASDTIP 229 (357)
T ss_dssp TTSCEEEEETTTT---EEEEEECC---CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC---BCBCCCTTCCSCE
T ss_pred CCCeEEEEECCCC---cEEEEEcC---CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce---eeeeeeccccccc
Confidence 9999999999986 56666665 6788999999994446899999999999999998875 2333334577889
Q ss_pred eEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 378 MGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 378 ~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
.+++|+|+ +.+|++|+.|+.|++||+++++.+.... ....+.+++|+|++. .+|++|+.|++|+|||+++++...
T Consensus 230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~lasgs~D~~i~iwd~~~~~~~~- 306 (357)
T 4g56_B 230 TSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSS--PFLASISEDCTVAVLDADFSEVFR- 306 (357)
T ss_dssp EEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSS--CCEEEEETTSCEEEECTTSCEEEE-
T ss_pred cchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCC--CEEEEEeCCCEEEEEECCCCcEeE-
Confidence 99999997 5688899999999999999988876654 456788999999763 479999999999999999876432
Q ss_pred eeccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccC
Q 009203 456 AFGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~ 498 (540)
..+|...|++++|+| ++.+|++|+.||.|++|++..
T Consensus 307 -------~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 307 -------DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp -------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred -------ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 236899999999998 799999999999999999986
No 41
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-39 Score=346.94 Aligned_cols=371 Identities=11% Similarity=0.087 Sum_probs=256.5
Q ss_pred cCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccce--------EEecCCCCeEEEeccc-----
Q 009203 152 SPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPL--------VRTSASPATIHCHTSN----- 216 (540)
Q Consensus 152 ~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~~~~~~d~~i~~~~~~----- 216 (540)
.+|...|.++++.|...+.+ +.|..+. +|............|...|.. +++++.|++|++|+..
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~-lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVH-IYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEE-EECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEE-EEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE
Confidence 37889999999999987766 4555544 333222222222345555544 5556679999999864
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecc--cc--cCCCCCCCCceeEEEecC-CCeEEE
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLST--TD--CLSPKHRRWPEDIAWHPQ-GNSLFS 291 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~--~~--~~~~~h~~~V~~~~~~~~-~~~l~s 291 (540)
..+ .|.+.|++++|+|+ +.+|++|+.||+|++||+.++... .+... .. ....+|...|.+++|+|+ +..|++
T Consensus 93 ~~~-~~~~~V~~v~~sp~-g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 93 TTV-FVPGKITSIDTDAS-LDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EEE-ECSSCEEEEECCTT-CSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred EEE-cCCCCEEEEEECCC-CCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 223 37789999999996 999999999999999999877542 11100 00 112589999999999996 468888
Q ss_pred EeecCCCCCeEEEEecCCCCCceeEEeecCC---------------CCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203 292 AHTADSGDSQISVLNLNKTKGRACVTFLDDK---------------PHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE 356 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 356 (540)
+ +.|+.| +||+.++ ..+..+..+ .+|...|.+++|+| ++.+|++|+.||.|++||+
T Consensus 170 g----~~dg~v-lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 170 S----YEYVTL-TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp E----CSSCEE-EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEET
T ss_pred E----eCCCcE-EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEEC
Confidence 8 999999 9999976 455555543 23457799999999 9999999999999999999
Q ss_pred CCCCCccccceee-cc-------------cCCcceeEEEec----cCC-CEEEEEeCC----------------------
Q 009203 357 RDAEDSWKPKALH-RN-------------LHSSAVMGVAGM----QQK-QIVLSAGAD---------------------- 395 (540)
Q Consensus 357 ~~~~~~~~~~~~~-~~-------------~~~~~v~~l~~s----~~~-~~l~~~~~d---------------------- 395 (540)
++++++.. ..+. .. .|...|++++|+ |++ .+|++|+.|
T Consensus 241 ~~g~~~~~-r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~ 319 (902)
T 2oaj_A 241 NSGHMIMA-RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT 319 (902)
T ss_dssp TTCCEEEE-ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred CCCcEEEE-EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence 98764211 0010 00 134568888884 332 345555433
Q ss_pred ------------------------------------------------------CeEEEEECCCCCeeee--------ec
Q 009203 396 ------------------------------------------------------KRIIGFDAGVGRADFK--------HQ 413 (540)
Q Consensus 396 ------------------------------------------------------g~i~iwd~~~~~~~~~--------~~ 413 (540)
|.|++||+.++..... ..
T Consensus 320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~ 399 (902)
T 2oaj_A 320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSW 399 (902)
T ss_dssp CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTT
T ss_pred chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccc
Confidence 3344444433321110 00
Q ss_pred cCccEEEE----------------------------------eecCCCCCceEEEEEcCCCeEEEEECCCCccee-eeec
Q 009203 414 IESKCMSV----------------------------------LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI-HAFG 458 (540)
Q Consensus 414 ~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~ 458 (540)
....+.++ +|+|+ +.+|++|+.|++|++||+.++.... ..+.
T Consensus 400 ~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd---g~~laSgs~DgtVrlWd~~~g~~~~~~~~~ 476 (902)
T 2oaj_A 400 LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY---GTAFITGHSNGSVRIYDASHGDIQDNASFE 476 (902)
T ss_dssp BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE---EEEEEEEETTSEEEEEESSCCTTTTTBCEE
T ss_pred cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc---CcEEEEecCCCcEEEEECCCccccCCceEE
Confidence 01122222 23343 3799999999999999998774211 0010
Q ss_pred cc---cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC----------------------------------
Q 009203 459 WK---QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN---------------------------------- 501 (540)
Q Consensus 459 ~~---~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~---------------------------------- 501 (540)
.. ....+|...|++++|+|||++||+|+.||+|+|||+.+...
T Consensus 477 ~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (902)
T 2oaj_A 477 VNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDR 556 (902)
T ss_dssp EEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGG
T ss_pred eechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccccc
Confidence 00 00127889999999999999999999999999999986310
Q ss_pred ---------cccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 502 ---------KPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 502 ---------~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.++..+.+|.+.|++|+|+||| +||+|+.|++|+|||+
T Consensus 557 ~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 557 APTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp CCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred CCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 2356677899999999999999 9999999999999995
No 42
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-39 Score=321.89 Aligned_cols=294 Identities=14% Similarity=0.145 Sum_probs=229.2
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADS 297 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~ 297 (540)
..+|...|+||+|+|.++.+||+|+.||+|+|||+.+++....+.. .+|.+.|++++|+| ++.+|+++ +
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~------~gH~~~V~~l~f~p~~~~~l~s~----s 184 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG------IGAGGSITGLKFNPLNTNQFYAS----S 184 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC------CSSSCCCCEEEECSSCTTEEEEE----C
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc------cCCCCCEEEEEEeCCCCCEEEEE----e
Confidence 4688999999999997688999999999999999987764333311 48999999999998 68899999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.|++|++||+.++ ....+.....+...+.+++|+| ++.+|++|+.||.|++||++... ... ..+|...|
T Consensus 185 ~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~----~~~--~~~h~~~v 253 (435)
T 4e54_B 185 MEGTTRLQDFKGN----ILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE----LWN--LRMHKKKV 253 (435)
T ss_dssp SSSCEEEEETTSC----EEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB----CCC--SBCCSSCE
T ss_pred CCCEEEEeeccCC----ceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce----eEE--EecccceE
Confidence 9999999999864 2333333223455688999999 99999999999999999997643 222 25699999
Q ss_pred eEEEeccCCC-EEEEEeCCCeEEEEECCCCCeee----eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 378 MGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 378 ~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
++++|+|++. +|++++.|+.|++||+++++... ...+...+.+++|+|++ .+|++++.||.|++||+.++..
T Consensus 254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg---~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG---ARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS---SEEEEEESSSCEEEEESSSSSS
T ss_pred EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC---CeeEEEcCCCEEEEEECCCCcc
Confidence 9999999876 78899999999999998865432 23456788999999987 7999999999999999998876
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEEEEe------------CCCcEEEEeccCCCCcccccc-cccccceeEE-E
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGS------------ADPVIHLFDIRYSANKPSQSI-RAHQKRVFKA-V 518 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l-~ 518 (540)
......+......+ ..+..+.|+|++.++++++ .++.|++||..+ +..+..+ .+|...|.++ +
T Consensus 331 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~--g~~~~~l~~~~~~~v~s~~~ 407 (435)
T 4e54_B 331 PLGLIPHPHRHFQH-LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS--GKMMCQLYDPESSGISSLNE 407 (435)
T ss_dssp EEEECCCCCCCCSS-SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS--CCEEEEECCSSCCCCCCEEE
T ss_pred ceEEeccccccccc-ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC--CcEEEEEeCCCCCcEEEEEE
Confidence 55443322111111 1233456777766666553 345799999998 6666665 4688889887 6
Q ss_pred EcCCCCEEEEEEcCCcEEEEeC
Q 009203 519 WHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 519 ~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|+|+|.+|++|+ |++|+||++
T Consensus 408 fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 408 FNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ECTTSSCEEEEC-SSEEEECCC
T ss_pred ECCCCCEEEEEc-CCcEEEEEC
Confidence 999999999876 889999985
No 43
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-38 Score=358.76 Aligned_cols=371 Identities=14% Similarity=0.182 Sum_probs=299.2
Q ss_pred CCCCeeeecCCcceeeEEEEcccccccC--CCCccEEEEeec-CCCceEEecccccccceEE-----------ecCCCCe
Q 009203 144 PSGSSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDR-GTKRKFEQKEHRELIPLVR-----------TSASPAT 209 (540)
Q Consensus 144 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~-----------~~~~d~~ 209 (540)
.......+.+|...|.++++.|...+.+ +.+..+. +|.. .........+|...|.+++ +++.|++
T Consensus 646 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~-vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK-IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEE-EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 3445667789999999999999987666 4555544 3433 2333344567777776554 4556899
Q ss_pred EEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccc------------------
Q 009203 210 IHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT------------------ 266 (540)
Q Consensus 210 i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~------------------ 266 (540)
|++|+.. ..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.++.....+....
T Consensus 725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 803 (1249)
T 3sfz_A 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803 (1249)
T ss_dssp EEEEETTSSSEEEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred EEEEECCCcchhheecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence 9999765 457899999999999995 8999999999999999998765433221100
Q ss_pred -----------------------------ccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203 267 -----------------------------DCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT 317 (540)
Q Consensus 267 -----------------------------~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~ 317 (540)
.....+|...|.+++|+|++.+++++ +.++.|++||+.++ ..+.
T Consensus 804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~~dg~v~vwd~~~~---~~~~ 876 (1249)
T 3sfz_A 804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA----LSQYCVELWNIDSR---LKVA 876 (1249)
T ss_dssp CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEE----CSSSCEEEEETTTT---EEEE
T ss_pred EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEE----eCCCeEEEEEcCCC---ceee
Confidence 00012788999999999999999999 99999999999976 5566
Q ss_pred eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC------------------------------------
Q 009203 318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED------------------------------------ 361 (540)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------------------------------------ 361 (540)
.+.+ |.+.|.+++|+| ++.+|++++.||.|++||+.+...
T Consensus 877 ~~~~---h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1249)
T 3sfz_A 877 DCRG---HLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 952 (1249)
T ss_dssp EECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES
T ss_pred ecCC---CccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC
Confidence 6654 677899999999 999999999999999998642100
Q ss_pred ----------------------------------cc----ccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203 362 ----------------------------------SW----KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA 403 (540)
Q Consensus 362 ----------------------------------~~----~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~ 403 (540)
++ ........+|...|.+++|+|+|++|++++.||.|++||+
T Consensus 953 ~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 953 TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp SCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred cceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 00 0001112458899999999999999999999999999999
Q ss_pred CCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE
Q 009203 404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT 483 (540)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 483 (540)
.++...........+.++.++|++ .+++++.||.|++||+.++.... .+.+|...|++++|+|+|++|+
T Consensus 1033 ~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~v~vwd~~~~~~~~-------~~~~~~~~v~~~~~s~d~~~l~ 1101 (1249)
T 3sfz_A 1033 QTGDYVFLQAHQETVKDFRLLQDS----RLLSWSFDGTVKVWNVITGRIER-------DFTCHQGTVLSCAISSDATKFS 1101 (1249)
T ss_dssp TTTEEECCBCCSSCEEEEEECSSS----EEEEEESSSEEEEEETTTTCCCE-------EEECCSSCCCCEEECSSSSSCE
T ss_pred CCCceEEEecCCCcEEEEEEcCCC----cEEEEECCCcEEEEECCCCceeE-------EEcccCCcEEEEEECCCCCEEE
Confidence 999888777778889999999975 78899999999999999887543 3457889999999999999999
Q ss_pred EEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 484 SGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 484 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+++.||.|++||+.+ +.++..+.+|.+.|++++|+|+|++|++++.||.|++||+
T Consensus 1102 s~s~d~~v~iwd~~~--~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1102 STSADKTAKIWSFDL--LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp EECCSSCCCEECSSS--SSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred EEcCCCcEEEEECCC--cceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 999999999999998 6788899999999999999999999999999999999985
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.5e-39 Score=313.01 Aligned_cols=292 Identities=13% Similarity=0.142 Sum_probs=238.1
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
+..|.++|++++|+|+ +.+|++|+.|+.|++||+.+++ ....+ .+|...|.+++|+|++++|+++
T Consensus 4 ~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~~~---- 70 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHEL--------KEHNGQVTGVDWAPDSNRIVTC---- 70 (372)
T ss_dssp EESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEE--------ECCSSCEEEEEEETTTTEEEEE----
T ss_pred ecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeee--------cCCCCcccEEEEeCCCCEEEEE----
Confidence 4579999999999996 9999999999999999998875 44444 4788999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|+.|++||+.++ .....+... .|...|.+++|+| ++.+|++++.|+.|++||++.+...... ......|...
T Consensus 71 ~~dg~i~vwd~~~~---~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~~~~ 144 (372)
T 1k8k_C 71 GTDRNAYVWTLKGR---TWKPTLVIL-RINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVC-KHIKKPIRST 144 (372)
T ss_dssp ETTSCEEEEEEETT---EEEEEEECC-CCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEE-EEECTTCCSC
T ss_pred cCCCeEEEEECCCC---eeeeeEEee-cCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceee-eeeecccCCC
Confidence 99999999999875 222222211 2567899999999 9999999999999999999987631111 1222458899
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECC------------------CCCeeeee-ccCccEEEEeecCCCCCceEEEEEc
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAG------------------VGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
|.+++|+|++++|++++.||.|++||++ .++.+... .+...+.++.|+|++ .+|++++
T Consensus 145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~ 221 (372)
T 1k8k_C 145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG---SRVAWVS 221 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS---SEEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC---CEEEEEe
Confidence 9999999999999999999999999964 45555544 445678999999987 6999999
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC----------------
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN---------------- 501 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~---------------- 501 (540)
.|+.|++||+++++... .+..|...|.+++|+|++.+|++| .|+.|++|++....+
T Consensus 222 ~d~~i~i~d~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVA-------TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 293 (372)
T ss_dssp TTTEEEEEEGGGTTEEE-------EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred CCCEEEEEECCCCceeE-------EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchh
Confidence 99999999999877543 335678899999999999998888 899999999986111
Q ss_pred ----------------ccc------ccc-cccccceeEEEEc-CCC---CEEEEEEcCCcEEEEeC
Q 009203 502 ----------------KPS------QSI-RAHQKRVFKAVWH-YSH---PLLISISSDLNIGLHKI 540 (540)
Q Consensus 502 ----------------~~~------~~~-~~h~~~i~~l~~s-~~~---~~l~s~~~dg~v~iw~l 540 (540)
... ..+ .+|.+.|++++|+ ++| .+|++|+.||.|++|++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 294 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp ---CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred hhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 010 223 4899999999976 666 89999999999999985
No 45
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.3e-38 Score=326.38 Aligned_cols=364 Identities=19% Similarity=0.251 Sum_probs=272.7
Q ss_pred CCeeeecCCcce-eeEEEEcc--cccccC--CCCccEEEEeec---------CCCceEEecccccccceEEecCC-----
Q 009203 146 GSSTQASPAAHS-IGIVKVKG--EKSHRN--SSDSEIVEVRDR---------GTKRKFEQKEHRELIPLVRTSAS----- 206 (540)
Q Consensus 146 ~~~~~~~~h~~~-v~~~~~~~--~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~----- 206 (540)
.....+.+|... |.++++.| ...+.+ +.+..+. +|.. ..........|...|..+++.++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~-vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI-VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE-EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE-EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence 456677899999 99999999 766555 4455444 2222 12333445667888877776654
Q ss_pred ----C----CeEEEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203 207 ----P----ATIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR 275 (540)
Q Consensus 207 ----d----~~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~ 275 (540)
+ +.|.+|+.. ..+.+|.+.|++++|+|++..+|++|+.|+.|++||+.+++....+ .+|..
T Consensus 133 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~--------~~~~~ 204 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD--------RTHHK 204 (615)
T ss_dssp EEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE--------CSSSC
T ss_pred EeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee--------cccCC
Confidence 2 578888744 4578999999999999973348999999999999999887765555 46778
Q ss_pred ---CceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCceeEEee-cCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203 276 ---WPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFL-DDKPHVKGIINSIIFLPWENPCFATGGSDHA 350 (540)
Q Consensus 276 ---~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 350 (540)
.|.+++|+|+ +++|+++ +.|+.|++||+.++ ..+..+ .....|...|.+++|+ ++.+|++++.|+.
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 205 QGSFVRDVEFSPDSGEFVITV----GSDRKISCFDGKSG---EFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADAT 275 (615)
T ss_dssp TTCCEEEEEECSTTCCEEEEE----ETTCCEEEEETTTC---CEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSE
T ss_pred CCceEEEEEECCCCCCEEEEE----eCCCeEEEEECCCC---CEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCc
Confidence 8999999999 9999999 99999999999876 445555 3111367889999999 8889999999999
Q ss_pred EEEEecCCCCCccccce----------------------------------------eecccCC----------------
Q 009203 351 VVLWSERDAEDSWKPKA----------------------------------------LHRNLHS---------------- 374 (540)
Q Consensus 351 i~iwd~~~~~~~~~~~~----------------------------------------~~~~~~~---------------- 374 (540)
|++||+.+++....... ....+|.
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~ 355 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSY 355 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEET
T ss_pred EEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECC
Confidence 99999987653211100 0011233
Q ss_pred -----------------cceeEEEeccCCCEEEEEeCC------------------------------------------
Q 009203 375 -----------------SAVMGVAGMQQKQIVLSAGAD------------------------------------------ 395 (540)
Q Consensus 375 -----------------~~v~~l~~s~~~~~l~~~~~d------------------------------------------ 395 (540)
..|.+++| +++..|++++.|
T Consensus 356 dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (615)
T 1pgu_A 356 DGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434 (615)
T ss_dssp TSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred CCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence 33444444 224444444444
Q ss_pred --------------------------------CeEEEEECCCCCee--eeeccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203 396 --------------------------------KRIIGFDAGVGRAD--FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ 441 (540)
Q Consensus 396 --------------------------------g~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 441 (540)
+.|++||+.++... ....+...+.++.|+|++ .+|++++.||.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~dg~ 511 (615)
T 1pgu_A 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE---TYIAAGDVMGK 511 (615)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS---SEEEEEETTSC
T ss_pred cCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC---CEEEEcCCCCe
Confidence 44444444433321 112345678899999987 79999999999
Q ss_pred EEEEECCCCcceeeeeccccccCc-cccCeEEEEEcC----------CCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 442 LRLYDIRLRQTEIHAFGWKQESSE-SQSALINQSWSP----------DGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 442 v~i~d~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp----------~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
|++||+.+++... .+.+ |...|++++|+| ++++|++|+.||.|++||+.+. ..++..+.+|
T Consensus 512 i~iw~~~~~~~~~-------~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h 583 (615)
T 1pgu_A 512 ILLYDLQSREVKT-------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAH 583 (615)
T ss_dssp EEEEETTTTEEEE-------CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-TCCEEETTSS
T ss_pred EEEeeCCCCccee-------EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC-ceechhhhcC
Confidence 9999999877543 3345 889999999999 9999999999999999999973 3778889999
Q ss_pred ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 511 QKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
...|++++|+|+++ |++++.||.|++|++
T Consensus 584 ~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 584 KDGVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp TTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred ccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 99999999999999 999999999999985
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-39 Score=321.08 Aligned_cols=294 Identities=16% Similarity=0.249 Sum_probs=244.6
Q ss_pred ccCceEEEEEecCCCcEEEEE----------eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEE
Q 009203 222 HKRKLRSLSLNPVNEQLFVTS----------ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFS 291 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s 291 (540)
+...|.+++|+|++..+|++| +.|+.|+|||+.++.....+.. ..|...|.+++|+|++.+|++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~ 84 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS------LQVDSKFNDLDWSHNNKIIAG 84 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC------CCCSSCEEEEEECSSSSCEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE------EecCCceEEEEECCCCCeEEE
Confidence 335789999999744499999 8999999999987653211110 367889999999999999999
Q ss_pred EeecCCCCCeEEEEecCCCCC-ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC------Cccc
Q 009203 292 AHTADSGDSQISVLNLNKTKG-RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE------DSWK 364 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~------~~~~ 364 (540)
+ +.|+.|++||+.+... ...+..+.. |...|.+++|+|.++.+|++++.|+.|++||+.++. ....
T Consensus 85 ~----~~dg~v~vw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 85 A----LDNGSLELYSTNEANNAINSMARFSN---HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp E----ESSSCEEEECCSSTTSCCCEEEECCC---SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred E----ccCCeEEEeecccccccccchhhccC---CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 9 8999999999987321 234555554 678899999999338999999999999999999876 2111
Q ss_pred cceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeecc-------CccEEEEeecCCCCCceEEEEE
Q 009203 365 PKALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQI-------ESKCMSVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~ 436 (540)
. .....|...|.+++|+|+ +.+|++++.||.|++||+++++.+..... ...+.++.|+|++. .+++++
T Consensus 158 ~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~ 233 (416)
T 2pm9_A 158 P--GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--TRVATA 233 (416)
T ss_dssp C--CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--TEEEEE
T ss_pred c--ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--CEEEEE
Confidence 1 112458899999999998 78999999999999999999888766544 57789999999863 389999
Q ss_pred cCCC---eEEEEECCCCcceeeeeccccccC-ccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccccccc
Q 009203 437 TPGR---QLRLYDIRLRQTEIHAFGWKQESS-ESQSALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ 511 (540)
Q Consensus 437 ~~dg---~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~ 511 (540)
+.|+ .|++||+++...... .+. +|...|++++|+| ++.+|++++.||.|++||+.+ ++++..+.+|.
T Consensus 234 ~~d~~~~~i~~~d~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~--~~~~~~~~~~~ 305 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNANTPLQ------TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES--AEQLSQFPARG 305 (416)
T ss_dssp ECCSSSCCCCEEETTSTTSCSB------CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS--CCEEEEEECSS
T ss_pred ECCCCCceEEEEeCCCCCCCcE------EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC--CccceeecCCC
Confidence 9998 999999998653332 345 7889999999999 999999999999999999998 78888999999
Q ss_pred cceeEEEEcCCC-CEEEEEEcCCcEEEEeC
Q 009203 512 KRVFKAVWHYSH-PLLISISSDLNIGLHKI 540 (540)
Q Consensus 512 ~~i~~l~~s~~~-~~l~s~~~dg~v~iw~l 540 (540)
..|++++|+|++ .+|++++.||.|+||++
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 999999999999 89999999999999986
No 47
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-37 Score=296.22 Aligned_cols=286 Identities=15% Similarity=0.203 Sum_probs=238.0
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccc
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLH 222 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h 222 (540)
...+.+|...|.++.+.|... .+++++.|+.+++|+.. ..+.+|
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~-------------------------------~l~s~~~dg~i~iw~~~~~~~~~~~~~h 64 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGE-------------------------------WLASSSADKLIKIWGAYDGKFEKTISGH 64 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSS-------------------------------EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EEEEcccCCcEEEEEECCCCC-------------------------------EEEEeeCCCeEEEEeCCCcccchhhccC
Confidence 446679999999999998743 57788899999999764 457899
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...|.+++|+|+ +++|++|+.||.|++||+.+++....+ .+|...|.+++|+|++++|+++ +.|+.|
T Consensus 65 ~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~----~~d~~i 131 (312)
T 4ery_A 65 KLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTL--------KGHSNYVFCCNFNPQSNLIVSG----SFDESV 131 (312)
T ss_dssp SSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECSSSSEEEEE----ETTSCE
T ss_pred CCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcCCCCEEEEE----eCCCcE
Confidence 999999999996 899999999999999999988766655 4788999999999999999999 999999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
++||+.++ ..+..+.. |...|.+++|+| ++.+|++|+.||.|++||+++++.. . .....+...+..++|
T Consensus 132 ~iwd~~~~---~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~---~-~~~~~~~~~~~~~~~ 200 (312)
T 4ery_A 132 RIWDVKTG---KCLKTLPA---HSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCL---K-TLIDDDNPPVSFVKF 200 (312)
T ss_dssp EEEETTTC---CEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE---E-EECCSSCCCEEEEEE
T ss_pred EEEECCCC---EEEEEecC---CCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcee---e-EEeccCCCceEEEEE
Confidence 99999976 44556654 567899999999 9999999999999999999987641 2 222346778999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
+|++++|++++.||.|++||+++++.+...... ..+....+.+.+ +.++++|+.||.|++||+.+++...
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~----- 273 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQ----- 273 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS--SCEEEECCTTSCEEEEETTTCCEEE-----
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC--CcEEEEECCCCEEEEEECCCchhhh-----
Confidence 999999999999999999999998876654322 222333333322 1589999999999999999876433
Q ss_pred ccccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEEecc
Q 009203 460 KQESSESQSALINQSWSPDGLYITSGS--ADPVIHLFDIR 497 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~ 497 (540)
.+.+|...|.+++|+|++.+|++++ .|+.|++|+.+
T Consensus 274 --~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 274 --KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred --hhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 4568999999999999999999987 69999999875
No 48
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.4e-38 Score=310.41 Aligned_cols=279 Identities=16% Similarity=0.237 Sum_probs=234.6
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
++.|+|++ +++||+|. |++|+|||+.+++....+.. .+|...|++|+|+|+|++|++| +.|+.|++|
T Consensus 108 ~~~l~wS~--~n~lAvgl-d~tV~lWd~~tg~~~~~~~~------~~~~~~V~sv~fspdg~~lasg----s~Dg~v~iW 174 (420)
T 4gga_A 108 LNLVDWSS--GNVLAVAL-DNSVYLWSASSGDILQLLQM------EQPGEYISSVAWIKEGNYLAVG----TSSAEVQLW 174 (420)
T ss_dssp CBCEEECT--TSEEEEEE-TTEEEEEETTTCCEEEEEEC------CSTTCCEEEEEECTTSSEEEEE----ETTSCEEEE
T ss_pred ceeEEECC--CCEEEEEe-CCEEEEEECCCCCEEEEEEe------cCCCCcEEEEEECCCCCEEEEE----ECCCeEEEE
Confidence 57899997 35788876 89999999999876655432 4788899999999999999999 999999999
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ 385 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 385 (540)
|+.++ ..+..+.+ |...+.+++++ +.+|++|+.|+.+++||...... ......+|...+..+.|+|+
T Consensus 175 d~~~~---~~~~~~~~---h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~----~~~~~~~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 175 DVQQQ---KRLRNMTS---HSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPD 241 (420)
T ss_dssp ETTTT---EEEEEECC---CSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTT
T ss_pred EcCCC---cEEEEEeC---CCCceEEEeeC---CCEEEEEeCCCceeEeeecccce----eeEEecccccceeeeeecCC
Confidence 99986 56666665 67789888885 57999999999999999987653 33334669999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCee-----eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 386 KQIVLSAGADKRIIGFDAGVGRAD-----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 386 ~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
+.++++++.|+.+++||...++.. ........+.++.|+|.+.....+++|+.|++|++||+.++......
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~---- 317 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---- 317 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE----
T ss_pred CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee----
Confidence 999999999999999999886542 22445678899999998876444455678999999999988754432
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 461 QESSESQSALINQSWSPDGLYITSGS--ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
.+...+.++.|+|+++.+++++ .||.|+|||+.+ ++++..+.+|.+.|++++|+|||++|+|||.||+|+||
T Consensus 318 ----~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 318 ----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp ----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ----ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 2345789999999999988765 789999999998 78999999999999999999999999999999999999
Q ss_pred eC
Q 009203 539 KI 540 (540)
Q Consensus 539 ~l 540 (540)
|+
T Consensus 392 dv 393 (420)
T 4gga_A 392 RC 393 (420)
T ss_dssp CC
T ss_pred EC
Confidence 86
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-39 Score=319.62 Aligned_cols=296 Identities=14% Similarity=0.136 Sum_probs=224.7
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC--CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR--GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~--~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
+..|.++|++++|+|+ +.+|++|+.|+.|+|||+.++ +....+ .+|...|.+++|+|++++|+++
T Consensus 7 ~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~---- 73 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTF--------SDHDKIVTCVDWAPKSNRIVTC---- 73 (377)
T ss_dssp EEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCB--------CCCSSCEEEEEECTTTCCEEEE----
T ss_pred EecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEE--------ecCCceEEEEEEeCCCCEEEEE----
Confidence 3457789999999995 999999999999999999876 333333 5899999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc-CCc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL-HSS 375 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~ 375 (540)
+.|+.|++||+.++........+.. |...|.+++|+| ++.+|++|+.|+.|++||+++++.......+ .. |..
T Consensus 74 s~d~~v~vwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~h~~ 147 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDGTWKQTLVLLR---LNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHL--KRPLRS 147 (377)
T ss_dssp ETTSSEEEC------CCCCEEECCC---CSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEE--CSSCCS
T ss_pred eCCCeEEEEEcCCCCceeeeeEecc---cCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEe--ecccCC
Confidence 9999999999998641223444443 678899999999 9999999999999999999987631112222 33 899
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCC------------------CCeeeeeccCccEEEEeecCCCCCceEEEEEc
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGV------------------GRADFKHQIESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
.|.+++|+|++++|++++.|+.|++||++. ++.+..+.+...+.++.|+|++ .+|++++
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSG---NALAYAG 224 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTS---SCEEEEE
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCC---CEEEEEe
Confidence 999999999999999999999999999863 2233334556779999999987 6899999
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc-------------
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS------------- 504 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~------------- 504 (540)
.||.|++||+.++...... ...+.+|...|.+++|+|+|++|++|+.++.+ +|+.........
T Consensus 225 ~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 225 HDSSVTIAYPSAPEQPPRA---LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp TTTEEC-CEECSTTSCEEE---CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred CCCcEEEEECCCCCCccee---eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 9999999999988753221 12456788999999999999999999766655 776652110000
Q ss_pred ---------------------c----------------cccccccceeEEEEcCCC-C---EEEEEEcCCcEEEEeC
Q 009203 505 ---------------------Q----------------SIRAHQKRVFKAVWHYSH-P---LLISISSDLNIGLHKI 540 (540)
Q Consensus 505 ---------------------~----------------~~~~h~~~i~~l~~s~~~-~---~l~s~~~dg~v~iw~l 540 (540)
. ....|.+.|+++++.+.. . .|+|||.||.|+|||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 011399999999976644 3 6999999999999996
No 50
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.9e-39 Score=310.60 Aligned_cols=298 Identities=10% Similarity=0.072 Sum_probs=224.4
Q ss_pred CceEEEEEecCCCcEEEEEeCC-------ceEEEEEcCCCCCcc--eeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203 224 RKLRSLSLNPVNEQLFVTSALD-------GVIRLWQLQSRGSGA--SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT 294 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~d-------g~v~iw~~~~~~~~~--~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~ 294 (540)
-+|+|++|+|| +++|++|+.+ +.|++|++....... .+.........+|...|.+++++ ++.++++..
T Consensus 15 ~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 15 YPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 48999999996 9999999764 359999998665422 11111112225788889888765 567776622
Q ss_pred c-------CCCCCeEEEEecCCCCCce-eEEeec--CCCCcccceeEEEEeCCCCCEEEEEe--cCCcEEEEecCCCCCc
Q 009203 295 A-------DSGDSQISVLNLNKTKGRA-CVTFLD--DKPHVKGIINSIIFLPWENPCFATGG--SDHAVVLWSERDAEDS 362 (540)
Q Consensus 295 ~-------~~~d~~i~vwd~~~~~~~~-~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~ 362 (540)
. ++.|+.+++|++....... ...... ....+...+.+++|+| ||+++++++ .|++|+|||+.+++..
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 1 2568899999987653321 111111 1122345688999999 999887554 6899999999998752
Q ss_pred cccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee---eccCccEEEEeecCCCCCceEEEEEcCC
Q 009203 363 WKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQTGTPG 439 (540)
Q Consensus 363 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d 439 (540)
.. ..|...|.+++|+|+|+++++++.+ .+++|+..++..+.. ......+.++.|+|++ .++++++.|
T Consensus 171 ---~~---~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg---~~l~~~s~d 240 (365)
T 4h5i_A 171 ---FE---IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD---TVLIAASLK 240 (365)
T ss_dssp ---EE---EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT---EEEEEEEES
T ss_pred ---EE---eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC---CEEEEEecC
Confidence 22 2377889999999999999999865 567777777766543 2345668899999988 788888877
Q ss_pred C----eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccc-ccccccce
Q 009203 440 R----QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQS-IRAHQKRV 514 (540)
Q Consensus 440 g----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~h~~~i 514 (540)
+ .+++||+......... ...+.+|...|++++|+|||++||+|+.|+.|+|||+.+ ++++.. +.+|...|
T Consensus 241 ~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~--~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSVLR---SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD--LSMSKIFKQAHSFAI 315 (365)
T ss_dssp SSCCEEEEEEEEETTEEEEEE---EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT--TEEEEEETTSSSSCE
T ss_pred CcceeEEeecccccceeccee---eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC--CcEEEEecCcccCCE
Confidence 7 6888998766533221 124567889999999999999999999999999999998 777776 47899999
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 515 FKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++|+|+|||++|||||.|++|+||+|
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99999999999999999999999996
No 51
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-38 Score=300.08 Aligned_cols=282 Identities=16% Similarity=0.182 Sum_probs=236.7
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
..+.+|.+.|++++| |+ +.+|++|+.||.|++||+.++.....+ ..|...|.+++|+|++++|+++
T Consensus 12 ~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~---- 77 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVV--------YTGQGFLNSVCYDSEKELLLFG---- 77 (313)
T ss_dssp EEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEE--------EECSSCEEEEEEETTTTEEEEE----
T ss_pred HHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEe--------ecCCccEEEEEECCCCCEEEEe----
Confidence 346899999999999 85 889999999999999999876655444 4678899999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.|+.|++|++........+..+.. |...|.+++|. +.++++++.||.|++|| .+. .......|...
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~-----~~~~~~~~~~~ 144 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIG---HQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS-----LVYNLQAHNAS 144 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECC---CSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE-----EEEEEECCSSC
T ss_pred cCCCeEEEEEeeecCCCCcccchhh---cccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc-----EEEecccCCCc
Confidence 9999999999987654455555554 67889999994 57999999999999999 322 22233458999
Q ss_pred eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
+.+++|.| +++++++++.||.|++||...............+.++.++|++ . +++++.||.|++||+++++...
T Consensus 145 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~---~-~~~~~~dg~i~i~d~~~~~~~~- 219 (313)
T 3odt_A 145 VWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDG---H-FISCSNDGLIKLVDMHTGDVLR- 219 (313)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETT---E-EEEEETTSEEEEEETTTCCEEE-
T ss_pred eeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCC---e-EEEccCCCeEEEEECCchhhhh-
Confidence 99999988 9999999999999999995433323333367788999999987 4 9999999999999999876543
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI 535 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v 535 (540)
.+.+|...|++++|+|++ .|++++.||.|++||+.+ ++++..+..|...|++++|+|+++ +++++.||.|
T Consensus 220 ------~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 220 ------TYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN--GSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp ------EEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT--CCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCE
T ss_pred ------hhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC--CceeEEEeccCceEEEEEEccCCC-EEEEeCCCcE
Confidence 345788999999999999 688999999999999998 788888999999999999999998 6679999999
Q ss_pred EEEeC
Q 009203 536 GLHKI 540 (540)
Q Consensus 536 ~iw~l 540 (540)
++||+
T Consensus 290 ~iw~~ 294 (313)
T 3odt_A 290 RIFSQ 294 (313)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99985
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=319.41 Aligned_cols=302 Identities=16% Similarity=0.159 Sum_probs=234.9
Q ss_pred ccccCceEEEEEec-CCCcEEEEEeCCceEEEEEcCC---CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 220 SLHKRKLRSLSLNP-VNEQLFVTSALDGVIRLWQLQS---RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 220 ~~h~~~V~~l~~sp-d~~~~l~tg~~dg~v~iw~~~~---~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
.+|.+.|++++|+| + +.+|++|+.||+|+|||+.+ +........ .+|...|.+++|+|++++|+++
T Consensus 60 ~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~--- 129 (437)
T 3gre_A 60 ENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT------YDCSSTVTQITMIPNFDAFAVS--- 129 (437)
T ss_dssp TTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE------EECSSCEEEEEECTTSSEEEEE---
T ss_pred cCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeee------ccCCCCEEEEEEeCCCCEEEEE---
Confidence 79999999999999 7 89999999999999999976 331111100 1588999999999999999999
Q ss_pred CCCCCeEEEEecC---CCCCc-----eeEEeecCCC-CcccceeEEE--EeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203 296 DSGDSQISVLNLN---KTKGR-----ACVTFLDDKP-HVKGIINSII--FLPWENPCFATGGSDHAVVLWSERDAEDSWK 364 (540)
Q Consensus 296 ~~~d~~i~vwd~~---~~~~~-----~~~~~~~~~~-~~~~~v~~~~--~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 364 (540)
+.|+.|++||+. ++... ..+..+...+ .+...+.++. +++ ++.+|++|+.|+.|++||+++++.
T Consensus 130 -s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--- 204 (437)
T 3gre_A 130 -SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLER--- 204 (437)
T ss_dssp -ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCE---
T ss_pred -eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee---
Confidence 999999999995 33111 0111111111 0345577777 557 889999999999999999999875
Q ss_pred cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCC-CCCceEEEEEcCCCe
Q 009203 365 PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPC-DFNLFMVQTGTPGRQ 441 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~ 441 (540)
...+....|...|++++|+|++.+|++|+.||.|++||+++++.+... .....+.++.++|. .+.+.+|++|+.||.
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 333332237899999999999999999999999999999998887754 45567888866653 223479999999999
Q ss_pred EEEEECCCCcceeeeecccc-----------------ccCc--cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc
Q 009203 442 LRLYDIRLRQTEIHAFGWKQ-----------------ESSE--SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK 502 (540)
Q Consensus 442 v~i~d~~~~~~~~~~~~~~~-----------------~~~~--~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~ 502 (540)
|++||+.++.......++.. .+.+ |...|++++|+ ++++|++|+.||.|++||+.+ ++
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~--~~ 361 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE--LS 361 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC--GG
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC--cc
Confidence 99999998775443332110 1223 88889999999 889999999999999999987 45
Q ss_pred ccccccc-------------------------------------cccceeEEEEcCC--CCEEEEEEcCCcEEEEe
Q 009203 503 PSQSIRA-------------------------------------HQKRVFKAVWHYS--HPLLISISSDLNIGLHK 539 (540)
Q Consensus 503 ~~~~~~~-------------------------------------h~~~i~~l~~s~~--~~~l~s~~~dg~v~iw~ 539 (540)
....+.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 362 SSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp GCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4444443 8899999999998 77999999999999996
No 53
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.8e-37 Score=297.97 Aligned_cols=294 Identities=14% Similarity=0.205 Sum_probs=240.6
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------hh
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------HV 218 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~~ 218 (540)
.++.||...|+++++.|..+ ..+++++.|++|++|+.. ..
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~------------------------------~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~ 81 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFP------------------------------DMILSASRDKTIIMWKLTRDETNYGIPQRA 81 (340)
T ss_dssp EEECCCSSCEEEEEECTTCT------------------------------TEEEEEETTSCEEEEEECCSSSCSEEEEEE
T ss_pred EEECCccCCEEEEEEeCCCC------------------------------CEEEEEcCCCeEEEEECCCCCcccceeeEE
Confidence 46789999999999998732 257889999999999753 45
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.+|.+.|++++|+|| +.+|++|+.|+.|++|+.......... ..+...+..+.+++++.+|+++ +.
T Consensus 82 l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~s~----s~ 148 (340)
T 4aow_A 82 LRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTTGTTTRRF--------VGHTKDVLSVAFSSDNRQIVSG----SR 148 (340)
T ss_dssp ECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECTTSSCEEEE----ET
T ss_pred EeCCCCCEEEEEECCC-CCEEEEEcccccceEEeecccceeeee--------cCCCCceeEEEEeecCccceee----cC
Confidence 7899999999999996 999999999999999999887654444 3566778899999999999999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
|+.+++||+... ........ .|...+.+++|++.. ..++++++.|+.|++||+++++. .....+|.+.|
T Consensus 149 d~~~~~~d~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-----~~~~~~h~~~v 218 (340)
T 4aow_A 149 DKTIKLWNTLGV--CKYTVQDE---SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-----KTNHIGHTGYL 218 (340)
T ss_dssp TSCEEEECTTSC--EEEEECSS---SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-----EEEECCCSSCE
T ss_pred CCeEEEEEeCCC--ceEEEEec---cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-----eeEecCCCCcE
Confidence 999999998864 12222222 367789999998732 35678999999999999998864 22335699999
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
++++|+|++++|++++.||.|++||+++.+.+........+.++.++|++ .+++++.|+.|++||+++........
T Consensus 219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~d~~i~iwd~~~~~~~~~~~ 294 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR----YWLCAATGPSIKIWDLEGKIIVDELK 294 (340)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS----SEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC----ceeeccCCCEEEEEECCCCeEEEecc
Confidence 99999999999999999999999999999998888888889999999976 56677789999999998765433221
Q ss_pred c--cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203 458 G--WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS 499 (540)
Q Consensus 458 ~--~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~ 499 (540)
. ......+|...|++++|+|+|++|++|+.||.|+|||+.++
T Consensus 295 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 295 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 1 11234578899999999999999999999999999999973
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.1e-38 Score=311.99 Aligned_cols=312 Identities=11% Similarity=0.100 Sum_probs=246.2
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
.+++++.|+.+++|+.. ..+.+| ..+....|+|+ +.+|++|+.||.|++||+.++.....+ .+|.
T Consensus 70 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~h~ 139 (420)
T 3vl1_A 70 HLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNLQREID--------QAHV 139 (420)
T ss_dssp TEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTTSCEEEEET--------TSSS
T ss_pred eEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCCCcceeeec--------cccc
Confidence 46677789999999765 345555 45555678885 899999999999999999876544333 5899
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
..|++++|+|++++|+++ +.|+.|++||+.++. .+..+.+ |.+.|.+++|+| ++.+|++++.|+.|++|
T Consensus 140 ~~v~~~~~~~~~~~l~s~----s~d~~i~iwd~~~~~---~~~~~~~---h~~~v~~~~~~~-~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISS----SQDMQLKIWSVKDGS---NPRTLIG---HRATVTDIAIID-RGRNVLSASLDGTIRLW 208 (420)
T ss_dssp SCEEEEEECTTSSEEEEE----ETTSEEEEEETTTCC---CCEEEEC---CSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred CccEEEEECCCCCEEEEE----eCCCeEEEEeCCCCc---CceEEcC---CCCcEEEEEEcC-CCCEEEEEcCCCcEEEe
Confidence 999999999999999999 999999999999873 3455554 678899999999 99999999999999999
Q ss_pred ecCCCCCccccceee-------------------cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec--
Q 009203 355 SERDAEDSWKPKALH-------------------RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-- 413 (540)
Q Consensus 355 d~~~~~~~~~~~~~~-------------------~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 413 (540)
|+++++......... ...+...+.+++|+|++++|++++.||.|++||+++++.+....
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 999887522211100 01123556667778999999999999999999999988766543
Q ss_pred cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009203 414 IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHL 493 (540)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~i 493 (540)
....+.++.|+|++. .+|++|+.||.|++||++++......+. ..|...|+++.| +++++|++++.||.|++
T Consensus 289 ~~~~v~~~~~~~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~-~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNA--NYIYAGYENGMLAQWDLRSPECPVGEFL-----INEGTPINNVYF-AAGALFVSSGFDTSIKL 360 (420)
T ss_dssp TSSCEEEEEECSSCT--TEEEEEETTSEEEEEETTCTTSCSEEEE-----ESTTSCEEEEEE-ETTEEEEEETTTEEEEE
T ss_pred cCCCceeEEEeCCCC--CEEEEEeCCCeEEEEEcCCCcCchhhhh-----ccCCCCceEEEe-CCCCEEEEecCCccEEE
Confidence 457899999999873 1899999999999999998765333221 125667888855 57889999999999999
Q ss_pred EeccCCCC-------cccccccccccceeEEEEcCCCC---EEEEEEcCCcEEEEeC
Q 009203 494 FDIRYSAN-------KPSQSIRAHQKRVFKAVWHYSHP---LLISISSDLNIGLHKI 540 (540)
Q Consensus 494 wd~~~~~~-------~~~~~~~~h~~~i~~l~~s~~~~---~l~s~~~dg~v~iw~l 540 (540)
|++..... .....+..|.+.|.+++|+|++. .|++++.+|.+.+|++
T Consensus 361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred EeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 99986311 11223456888999999999999 7888889999999985
No 55
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=292.39 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=234.3
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
.++|+||++ + +||+|. |++|+|||+.+++....+.. .+|...|++++|+|++++|++| +.|+.|++|
T Consensus 28 ~~~l~WS~~-~-~lAvg~-D~tV~iWd~~tg~~~~~~~~------~~~~~~V~~v~~~~~~~~l~sg----s~Dg~v~iw 94 (318)
T 4ggc_A 28 LNLVDWSSG-N-VLAVAL-DNSVYLWSASSGDILQLLQM------EQPGEYISSVAWIKEGNYLAVG----TSSAEVQLW 94 (318)
T ss_dssp CBCEEECTT-S-EEEEEE-TTEEEEEETTTCCEEEEEEC------CSTTCCEEEEEECTTSSEEEEE----ETTSEEEEE
T ss_pred ceEEEECCC-C-EEEEEe-CCEEEEEECCCCCEEEEEEe------cCCCCeEEEEEECCCCCEEEEE----ECCCcEEEe
Confidence 478999984 4 777765 99999999999887665532 4788899999999999999999 999999999
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ 385 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 385 (540)
|+.++ +++..+.+ |...+.++.+ ++..+++|+.++.+++|+...... ......+|...+..+.|+++
T Consensus 95 ~~~~~---~~~~~~~~---h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 95 DVQQQ---KRLRNMTS---HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp ETTTT---EEEEEEEC---CSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTT
T ss_pred ecCCc---eeEEEecC---ccceEEEeec---CCCEEEEEecCCceEeeecCCCce----eEEEEcCccCceEEEEEcCC
Confidence 99986 55666665 5666776666 557999999999999999988763 33334669999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCee-----eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 386 KQIVLSAGADKRIIGFDAGVGRAD-----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 386 ~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
+++|++++.||.|++||+++++.. ........+..+.+.|.+.....+++++.++.|++||.........
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~----- 236 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA----- 236 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-----
T ss_pred CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-----
Confidence 999999999999999999986642 2234456788899999887766677889999999999987765332
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 461 QESSESQSALINQSWSPDGLYITSGS--ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
..+...+..+.|+|++..+++++ .|+.|+|||+.+ ++++..+.+|.+.|++++|+|+|++|+|||.||+|+||
T Consensus 237 ---~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 237 ---VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ---EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ---ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 23566899999999999887654 799999999998 78899999999999999999999999999999999999
Q ss_pred eC
Q 009203 539 KI 540 (540)
Q Consensus 539 ~l 540 (540)
|+
T Consensus 312 d~ 313 (318)
T 4ggc_A 312 RC 313 (318)
T ss_dssp CC
T ss_pred EC
Confidence 96
No 56
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-37 Score=350.85 Aligned_cols=336 Identities=15% Similarity=0.143 Sum_probs=277.1
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK 223 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~ 223 (540)
..+.+|...|.++++.|... .+++++.|++|++|+.. ..+.+|.
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~-------------------------------~l~s~~~d~~i~vw~~~~~~~~~~~~~h~ 657 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQ-------------------------------RIASCGADKTLQVFKAETGEKLLDIKAHE 657 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSS-------------------------------EEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEecccccEEEEEECCCCC-------------------------------EEEEEeCCCeEEEEECCCCCEEEEeccCC
Confidence 35678999999999998743 57788899999999764 4578999
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeecCCCCCe
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTADSGDSQ 301 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~~~~d~~ 301 (540)
+.|++++|+|| +.+|++|+.||.|+|||+.+++....+ .+|...|.+++|+|+ +.+++++ +.|+.
T Consensus 658 ~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~sg----~~d~~ 724 (1249)
T 3sfz_A 658 DEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTY--------DEHSEQVNCCHFTNKSNHLLLATG----SNDFF 724 (1249)
T ss_dssp SCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECSSSSCCEEEEE----ETTSC
T ss_pred CCEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceEEEE--------cCCCCcEEEEEEecCCCceEEEEE----eCCCe
Confidence 99999999996 899999999999999999998876666 578999999999994 5588898 99999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc---------------
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK--------------- 366 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------- 366 (540)
|++||+.++ .+...+.+ |.+.|.+++|+| ++.+|++|+.||.|++||+.++.......
T Consensus 725 v~vwd~~~~---~~~~~~~~---h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1249)
T 3sfz_A 725 LKLWDLNQK---ECRNTMFG---HTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797 (1249)
T ss_dssp EEEEETTSS---SEEEEECC---CSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred EEEEECCCc---chhheecC---CCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccc
Confidence 999999986 45666664 678899999999 99999999999999999997664211100
Q ss_pred -----------------------------------eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009203 367 -----------------------------------ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK 411 (540)
Q Consensus 367 -----------------------------------~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 411 (540)
.....+|...|.+++|+|++.++++++.||.|++||+.++..+..
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~ 877 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 877 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE
T ss_pred cceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee
Confidence 001125788999999999999999999999999999999887665
Q ss_pred e-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee----------------------------eee--ccc
Q 009203 412 H-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI----------------------------HAF--GWK 460 (540)
Q Consensus 412 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~----------------------------~~~--~~~ 460 (540)
. .+...+.++.|+|++ .++++++.||.|++||+.+..... ... ...
T Consensus 878 ~~~h~~~v~~v~~spdg---~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1249)
T 3sfz_A 878 CRGHLSWVHGVMFSPDG---SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG 954 (1249)
T ss_dssp ECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred cCCCccceEEEEECCCC---CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence 4 455778999999987 689999999999999976321000 000 000
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.....+...+.+++|+|+|+++++|+.||.|++||+.+ +..+..+.+|...|++++|+|+|++|++++.||.|++||+
T Consensus 955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN--NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT--TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC--CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 00112345799999999999999999999999999998 6788888899999999999999999999999999999985
No 57
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.3e-37 Score=292.49 Aligned_cols=268 Identities=14% Similarity=0.182 Sum_probs=205.8
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC--CCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEe
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR--GSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAH 293 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~--~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~ 293 (540)
++.+|.+.|++++|+|+ |++||+|+.|++|+|||+... +...++ .+|.+.|.+++|+++ +++|+++
T Consensus 4 ~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l--------~gH~~~V~~v~~s~~~~g~~l~s~- 73 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTL--------TGHEGPVWRVDWAHPKFGTILASC- 73 (297)
T ss_dssp ECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEE--------CCCSSCEEEEEECCGGGCSEEEEE-
T ss_pred eccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEE--------ccccCCeEEEEecCCCcCCEEEEE-
Confidence 46799999999999996 999999999999999999753 333333 589999999999863 8899999
Q ss_pred ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceeecc
Q 009203 294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALHRN 371 (540)
Q Consensus 294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 371 (540)
+.|++|++||+.++.. ..+..+.. |...|.+++|+| + +.+|++|+.|+.|++||++++.. .......
T Consensus 74 ---s~D~~v~iWd~~~~~~-~~~~~~~~---h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~---~~~~~~~ 142 (297)
T 2pm7_B 74 ---SYDGKVMIWKEENGRW-SQIAVHAV---HSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGT---TSPIIID 142 (297)
T ss_dssp ---ETTTEEEEEEBSSSCB-CCCEEECC---CSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSC---BCCEEEE
T ss_pred ---cCCCEEEEEEcCCCce-EEEEEeec---CCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCc---eeeeeee
Confidence 9999999999987532 22334443 667899999999 6 88999999999999999987642 1122335
Q ss_pred cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
+|...|.+++|+|++..- ++. + ...+.+ .+|++|+.|++|++||+++..
T Consensus 143 ~h~~~v~~~~~~p~~~~~-----~~~--------~---------------~~~~~~---~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEE-----DGE--------H---------------NGTKES---RKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp CCSSCEEEEEECCCC----------------------------------------C---CEEEEEETTSCEEEEEEETTT
T ss_pred cccCccceEeecCCcccc-----ccc--------C---------------CCCCCc---ceEEEEcCCCcEEEEEEcCCC
Confidence 699999999999975311 000 0 000111 478889999999999987655
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCC---CEEEEEeCCCcEEEEeccCCCCcc-cccc--cccccceeEEEEcCCCCE
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDG---LYITSGSADPVIHLFDIRYSANKP-SQSI--RAHQKRVFKAVWHYSHPL 525 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~sg~~dg~i~iwd~~~~~~~~-~~~~--~~h~~~i~~l~~s~~~~~ 525 (540)
..... ...+.+|...|.+++|+|++ .+|++|+.|+.|+|||+....... ...+ ..|...|++++|+|+|++
T Consensus 192 ~~~~~---~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 268 (297)
T 2pm7_B 192 QTYVL---ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV 268 (297)
T ss_dssp TEEEE---EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred ceEEE---EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE
Confidence 32211 12457899999999999985 899999999999999998632211 1122 467889999999999999
Q ss_pred EEEEEcCCcEEEEeC
Q 009203 526 LISISSDLNIGLHKI 540 (540)
Q Consensus 526 l~s~~~dg~v~iw~l 540 (540)
|++++.||.|+||++
T Consensus 269 las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 269 LALSGGDNKVTLWKE 283 (297)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEEcCCCcEEEEEE
Confidence 999999999999973
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-38 Score=320.21 Aligned_cols=314 Identities=11% Similarity=0.068 Sum_probs=222.0
Q ss_pred eEEecCCCCeEEEeccc---------hhcccccCceEEEEEecC-----CCcEEEEEeCCceEEEEEcCCCCCcce-e--
Q 009203 200 LVRTSASPATIHCHTSN---------HVSSLHKRKLRSLSLNPV-----NEQLFVTSALDGVIRLWQLQSRGSGAS-L-- 262 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~---------~~~~~h~~~V~~l~~spd-----~~~~l~tg~~dg~v~iw~~~~~~~~~~-~-- 262 (540)
.+++++.|++|++|+.. .++.+|.+.|++|+|+|+ ++.+||+|+.||+|+|||+..+..... .
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 46788999999999753 125678899999999995 257999999999999999987653210 0
Q ss_pred ecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEE--EEeCCCC-
Q 009203 263 LSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI--IFLPWEN- 339 (540)
Q Consensus 263 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~~- 339 (540)
.........+|...|++++|++++ .|++| +.||+|++||+.++. .....+.. |...|.+| .|+| ++
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasg----s~DgtV~lWD~~~~~--~~~~~~~~---H~~~V~sv~~~~s~-~g~ 323 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSPT-TVVCG----FKNGFVAEFDLTDPE--VPSFYDQV---HDSYILSVSTAYSD-FED 323 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSSS-EEEEE----ETTSEEEEEETTBCS--SCSEEEEC---SSSCEEEEEEECCT-TSC
T ss_pred ecCceEEEEcCCCCEEEEEecCCC-eEEEE----eCCCEEEEEECCCCC--CceEEeec---ccccEEEEEEEcCC-CCC
Confidence 000001115899999999999864 89999 999999999998752 22334443 67889999 4667 77
Q ss_pred CEEEEEecCCcEEEEecCCCCCccccceeecccCC--cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCc
Q 009203 340 PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS--SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIES 416 (540)
Q Consensus 340 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~ 416 (540)
.+|++|+.|++|+|||++++++ ...+. +|. ..|.+++|+|++..+++++.|++|++||++++.++.. ..+..
T Consensus 324 ~~laS~S~D~tvklWD~~~~~~---~~~~~--~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~ 398 (524)
T 2j04_B 324 TVVSTVAVDGYFYIFNPKDIAT---TKTTV--SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398 (524)
T ss_dssp CEEEEEETTSEEEEECGGGHHH---HCEEE--EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred eEEEEeccCCeEEEEECCCCCc---ccccc--cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC
Confidence 8999999999999999998764 22222 243 3588999999999999999999999999999887543 45667
Q ss_pred cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203 417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES-SESQSALINQSWSPDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd 495 (540)
.+.+++|+|++ .+|++|+.||+|++||+.... .... .... ..+...+.+++|+|+|..+. ...+..+..|+
T Consensus 399 ~V~sva~Sp~g---~~l~Sgs~Dgtv~lwd~~~~~--~~~~--~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~ 470 (524)
T 2j04_B 399 TITAIGVSRLH---PMVLAGSADGSLIITNAARRL--LHGI--KNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLT 470 (524)
T ss_dssp CEEEEECCSSC---CBCEEEETTTEEECCBSCSST--TTCC--------CCCCEEEECBCCSSSCEEE-ECCCCCCCC--
T ss_pred ceEEEEeCCCC---CeEEEEECCCEEEEEechHhh--cccc--ccCccceeeeEEEEeccCCCCCeEE-ccCCceecccc
Confidence 89999999987 689999999999999986431 1100 0000 01122578999999998553 22233333333
Q ss_pred ccCCCCcccccccccccceeEEEEcCCCC---EEEEEEcCCcEEEEeC
Q 009203 496 IRYSANKPSQSIRAHQKRVFKAVWHYSHP---LLISISSDLNIGLHKI 540 (540)
Q Consensus 496 ~~~~~~~~~~~~~~h~~~i~~l~~s~~~~---~l~s~~~dg~v~iw~l 540 (540)
.. +..+..+.+|...|++++|+|+++ .|++|+.||.|+||++
T Consensus 471 ~~---g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 471 VN---DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp --------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred cC---CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 22 567788899999999999999964 9999999999999986
No 59
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-36 Score=317.34 Aligned_cols=354 Identities=14% Similarity=0.152 Sum_probs=269.5
Q ss_pred CCcceeeEEEEcccccccC-CCCccEEEEeecC-C----CceEEecccccc-cceEEecC-----------CCCeEEEec
Q 009203 153 PAAHSIGIVKVKGEKSHRN-SSDSEIVEVRDRG-T----KRKFEQKEHREL-IPLVRTSA-----------SPATIHCHT 214 (540)
Q Consensus 153 ~h~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~-~----~~~~~~~~~~~~-v~~~~~~~-----------~d~~i~~~~ 214 (540)
.|...|.++++.|...+.+ +.+..+. +|... . .....+.+|... |.++++.+ .|++|++|+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~~~~v~-v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEETTEEE-EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEecCCeEE-EEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 4667788889998877555 3333333 33322 2 345566788888 77777665 488999997
Q ss_pred cc-------------hhcccccCceEEEEEecCCCcEEEEEeCC----ceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203 215 SN-------------HVSSLHKRKLRSLSLNPVNEQLFVTSALD----GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP 277 (540)
Q Consensus 215 ~~-------------~~~~~h~~~V~~l~~spd~~~~l~tg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V 277 (540)
.. ..+.+|...|.+++|+|+ +++|++++.+ +.|.+|| .++....+ .+|...|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~--------~~~~~~v 163 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWD--SGNSLGEV--------SGHSQRI 163 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECCSSCSEEEEETT--TCCEEEEC--------CSCSSCE
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCC-CCEEEEeccCCCCccEEEEEE--CCCcceee--------ecCCccE
Confidence 62 246789999999999996 8999999988 7899998 33333333 5899999
Q ss_pred eeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCccc---ceeEEEEeCCC-CCEEEEEecCCcEE
Q 009203 278 EDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKG---IINSIIFLPWE-NPCFATGGSDHAVV 352 (540)
Q Consensus 278 ~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~-~~~l~s~~~dg~i~ 352 (540)
.+++|+|++. .|+++ +.|+.|++||+.++ ..+..+.. |.. .|.+++|+| + +.+|++++.||.|+
T Consensus 164 ~~~~~~~~~~~~l~~~----~~d~~v~vwd~~~~---~~~~~~~~---~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTV----GDDGSVVFYQGPPF---KFSASDRT---HHKQGSFVRDVEFSP-DSGEFVITVGSDRKIS 232 (615)
T ss_dssp EEEEECSSSSCEEEEE----ETTTEEEEEETTTB---EEEEEECS---SSCTTCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred EEEEECCCCCcEEEEE----eCCCcEEEEeCCCc---ceeeeecc---cCCCCceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence 9999999998 78998 99999999999875 55666664 456 899999999 7 99999999999999
Q ss_pred EEecCCCCCccccceeecc---cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-----ccEEEEeec
Q 009203 353 LWSERDAEDSWKPKALHRN---LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-----SKCMSVLPN 424 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~ 424 (540)
+||+.+++.. ..+ .. .|...|.+++|+ ++.+|++++.|+.|++||+++++.+...... ..+.++.+.
T Consensus 233 vwd~~~~~~~---~~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (615)
T 1pgu_A 233 CFDGKSGEFL---KYI-EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 307 (615)
T ss_dssp EEETTTCCEE---EEC-CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred EEECCCCCEe---EEe-cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC
Confidence 9999988742 222 12 689999999999 9999999999999999999988876654433 344444443
Q ss_pred CCCCCceEEEEEcCCCeEEEEECCCCcce---------------------------------------------------
Q 009203 425 PCDFNLFMVQTGTPGRQLRLYDIRLRQTE--------------------------------------------------- 453 (540)
Q Consensus 425 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~--------------------------------------------------- 453 (540)
++ .++++++.|+.|++||+.++...
T Consensus 308 -~~---~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~ 383 (615)
T 1pgu_A 308 -GN---GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 383 (615)
T ss_dssp -ET---TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST
T ss_pred -CC---CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC
Confidence 11 24444444444444444321100
Q ss_pred --------------------------------------------------------------------------------
Q 009203 454 -------------------------------------------------------------------------------- 453 (540)
Q Consensus 454 -------------------------------------------------------------------------------- 453 (540)
T Consensus 384 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (615)
T 1pgu_A 384 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463 (615)
T ss_dssp TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE
T ss_pred cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEee
Confidence
Q ss_pred -----eeeecc-----c-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcC
Q 009203 454 -----IHAFGW-----K-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHY 521 (540)
Q Consensus 454 -----~~~~~~-----~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~ 521 (540)
+..+.. . ..+.+|...|++++|+|+|++|++|+.||.|++||+.+ ++.+..+.+ |...|++++|+|
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS--REVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEECCSCCCSSCEEEEEECC
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC--CcceeEeecCCCCceeEEEEcC
Confidence 000000 0 24567888999999999999999999999999999997 777888887 999999999999
Q ss_pred ----------CCCEEEEEEcCCcEEEEeC
Q 009203 522 ----------SHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 522 ----------~~~~l~s~~~dg~v~iw~l 540 (540)
++++|++++.||.|++||+
T Consensus 542 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 542 AEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEES
T ss_pred ccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 9999999999999999986
No 60
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-37 Score=326.13 Aligned_cols=293 Identities=16% Similarity=0.230 Sum_probs=237.6
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------hh
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------HV 218 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~~ 218 (540)
..+.+|...|.++++.|... ..+++++.|++|++|+.. ..
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~------------------------------~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~ 425 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNA------------------------------DIIVSASRDKSIILWKLTKDDKAYGVAQRR 425 (694)
T ss_dssp EEEECCSSCEEEEECCTTCC------------------------------SEEEEEETTSEEEEEECCCSTTCSCEEEEE
T ss_pred hhcccCCceeEEEEecCCCC------------------------------CEEEEEeCCCcEEEEEccCCCcccccccce
Confidence 35668999999988877532 257889999999999653 34
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.+|.+.|++++|+|+ +++|++|+.||+|+|||+.++.....+ .+|...|.+++|+|++++|+++ +.
T Consensus 426 ~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~----s~ 492 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGVSTRRF--------VGHTKDVLSVAFSLDNRQIVSA----SR 492 (694)
T ss_dssp EECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECTTSSCEEEE----ET
T ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcceeEE--------eCCCCCEEEEEEeCCCCEEEEE----eC
Confidence 7899999999999996 999999999999999999988766555 5899999999999999999999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC--CEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN--PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
|++|++||.... ...........|...|.+++|+| ++ ..|++|+.|++|++||+++++. .....+|.+.
T Consensus 493 D~~i~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~-----~~~~~~h~~~ 563 (694)
T 3dm0_A 493 DRTIKLWNTLGE---CKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKL-----RSTLAGHTGY 563 (694)
T ss_dssp TSCEEEECTTSC---EEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCE-----EEEECCCSSC
T ss_pred CCEEEEEECCCC---cceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcE-----EEEEcCCCCC
Confidence 999999998743 33333333345778899999999 65 6899999999999999998764 2233569999
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
|++++|+|+|++|++++.||.|++||+++++.+........+.+++|+|++ .+++++ .++.|++||+.++......
T Consensus 564 v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~-~~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNR---YWLCAA-TEHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSS---SEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCC---cEEEEE-cCCCEEEEECCCCCChhhh
Confidence 999999999999999999999999999999988887778889999999987 455554 5677999999987643322
Q ss_pred ecccc------------ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 457 FGWKQ------------ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 457 ~~~~~------------~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
..... ....+...+++++|+|+|++|++|+.||.|+||++.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 11000 011122347899999999999999999999999986
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-36 Score=302.24 Aligned_cols=295 Identities=14% Similarity=0.200 Sum_probs=248.0
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
.+++++.|++|++|+.. ..+.+|.+.|++++|++ .+|++|+.||+|++||+.+++....+ .+|.
T Consensus 131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~--------~~h~ 199 (445)
T 2ovr_B 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTL--------YGHT 199 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEE--------CCCS
T ss_pred EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEE--------CCCC
Confidence 57788899999999764 45789999999999984 48999999999999999988766655 5899
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
..|.+++|+ ++.|+++ +.|+.|++||+.++ ..+..+.. |...|.+++| ++.++++|+.||.|++|
T Consensus 200 ~~v~~~~~~--~~~l~s~----s~dg~i~~wd~~~~---~~~~~~~~---~~~~v~~~~~---~~~~l~~~~~dg~i~iw 264 (445)
T 2ovr_B 200 STVRCMHLH--EKRVVSG----SRDATLRVWDIETG---QCLHVLMG---HVAAVRCVQY---DGRRVVSGAYDFMVKVW 264 (445)
T ss_dssp SCEEEEEEE--TTEEEEE----ETTSEEEEEESSSC---CEEEEEEC---CSSCEEEEEE---CSSCEEEEETTSCEEEE
T ss_pred CcEEEEEec--CCEEEEE----eCCCEEEEEECCCC---cEEEEEcC---CcccEEEEEE---CCCEEEEEcCCCEEEEE
Confidence 999999996 5689999 99999999999986 44555554 5678999999 56889999999999999
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEE
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMV 433 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 433 (540)
|+++++. .. ...+|...|.+++| ++.++++++.||.|++||+++++.+.... ....+.++.+++ .++
T Consensus 265 d~~~~~~---~~--~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-----~~l 332 (445)
T 2ovr_B 265 DPETETC---LH--TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-----NIL 332 (445)
T ss_dssp EGGGTEE---EE--EECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-----TEE
T ss_pred ECCCCcE---eE--EecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC-----CEE
Confidence 9998764 22 22468999999999 78999999999999999999998876644 345566777754 489
Q ss_pred EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-----c
Q 009203 434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-----R 508 (540)
Q Consensus 434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~ 508 (540)
++|+.||.|++||+++++...... ....|...|++++|+ +++|++|+.||.|++||+.+ ++.+..+ .
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~ 404 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQ----GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT--GEFIRNLVTLESG 404 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC----STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT--CCEEEEEEECTTG
T ss_pred EEEeCCCeEEEEECCCCcEEEEEc----cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC--CceeeeeeccccC
Confidence 999999999999999877543321 223488899999995 68999999999999999998 6666666 4
Q ss_pred ccccceeEEEEcCCCCEEEEEEcCCc----EEEEeC
Q 009203 509 AHQKRVFKAVWHYSHPLLISISSDLN----IGLHKI 540 (540)
Q Consensus 509 ~h~~~i~~l~~s~~~~~l~s~~~dg~----v~iw~l 540 (540)
.|.+.|++++|+|++.+|++|+.||+ |.|||+
T Consensus 405 ~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 405 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 78889999999999999999999998 999996
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-36 Score=303.31 Aligned_cols=297 Identities=14% Similarity=0.173 Sum_probs=243.2
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
.+++++.|++|++|+.. ..+.+|.+.|++++|+|+ + +|++|+.||+|++||+.+++....+ .+|.
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~--------~~h~ 203 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVF--------EGHN 203 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEE--------CCCS
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEE--------CCCC
Confidence 57888999999999764 457899999999999995 5 9999999999999999988766655 5899
Q ss_pred CCceeEEEe--cCCCeEEEEeecCCCCCeEEEEecCCCCCce--------------------eEEeecCCCCcccceeEE
Q 009203 275 RWPEDIAWH--PQGNSLFSAHTADSGDSQISVLNLNKTKGRA--------------------CVTFLDDKPHVKGIINSI 332 (540)
Q Consensus 275 ~~V~~~~~~--~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~ 332 (540)
..|.+++|+ +++.+|+++ +.|+.|++||+.++.... .+..+.+ |...|.++
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~ 276 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTG----SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG---HMASVRTV 276 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEE----ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC---CSSCEEEE
T ss_pred CccEEEEEecCCCCCEEEEE----cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC---ccceEEEE
Confidence 999999998 577899999 999999999998764221 1333333 56667777
Q ss_pred EEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee
Q 009203 333 IFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH 412 (540)
Q Consensus 333 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 412 (540)
++ ++.++++|+.||.|++||+.+++. .....+|...|.+++|+|+++++++++.||.|++||+++++.+...
T Consensus 277 --~~-~~~~l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 277 --SG-HGNIVVSGSYDNTLIVWDVAQMKC-----LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp --EE-ETTEEEEEETTSCEEEEETTTTEE-----EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred --cC-CCCEEEEEeCCCeEEEEECCCCcE-----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 45 778999999999999999998764 2223569999999999999999999999999999999999887765
Q ss_pred c-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcE
Q 009203 413 Q-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVI 491 (540)
Q Consensus 413 ~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i 491 (540)
. +...+.++.+++ .++++++.||.|++||+.+....... .+...+..++|+|++.+|++|+ ||.|
T Consensus 349 ~~h~~~v~~~~~~~-----~~l~s~s~dg~v~vwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 349 QGHTALVGLLRLSD-----KFLVSAAADGSIRGWDANDYSRKFSY--------HHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp CCCSSCEEEEEECS-----SEEEEEETTSEEEEEETTTCCEEEEE--------ECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred eCCCCcEEEEEEcC-----CEEEEEeCCCcEEEEECCCCceeeee--------cCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 4 456778888875 48999999999999999987643321 2455778889999999999998 8999
Q ss_pred EEEeccCCCCccccc-ccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 492 HLFDIRYSANKPSQS-IRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 492 ~iwd~~~~~~~~~~~-~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
++||+.+ ++.+.. +..|...|++++|+ ...++++++.||.+.+|
T Consensus 415 ~iwd~~~--g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 415 NIYNLRS--GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEETTT--CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred EEEECCC--CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 9999998 666664 66789999999997 34456666777766554
No 63
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=326.96 Aligned_cols=319 Identities=10% Similarity=0.016 Sum_probs=230.8
Q ss_pred eEEecCCCCeEEEeccch----hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203 200 LVRTSASPATIHCHTSNH----VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR 275 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~~----~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~ 275 (540)
.+++++.|++|++|+... ....|...|++|+|+| +++|++++.|++|+|||+.+++.+..+ .|..
T Consensus 31 ~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~~~~---------~~~~ 99 (902)
T 2oaj_A 31 LLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVLTTV---------FVPG 99 (902)
T ss_dssp EEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSEEEEE---------ECSS
T ss_pred EEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcEEEEE---------cCCC
Confidence 355667799999997651 2346889999999999 559999999999999999988766555 2456
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE-ee-------cCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT-FL-------DDKPHVKGIINSIIFLPWENPCFATGGS 347 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~-~~-------~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 347 (540)
.|++++|+|++++|++| +.||.|++||+.++. +.. .+ .....|.+.|.+++|+|.++..|++|+.
T Consensus 100 ~V~~v~~sp~g~~l~sg----s~dg~V~lwd~~~~~---~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~ 172 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIG----LQNGSMIVYDIDRDQ---LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE 172 (902)
T ss_dssp CEEEEECCTTCSEEEEE----ETTSCEEEEETTTTE---EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred CEEEEEECCCCCEEEEE----cCCCcEEEEECCCCc---cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence 79999999999999999 999999999998762 211 11 1223467889999999955678999999
Q ss_pred CCcEEEEecCCCCCccccceeec----------------ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009203 348 DHAVVLWSERDAEDSWKPKALHR----------------NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK 411 (540)
Q Consensus 348 dg~i~iwd~~~~~~~~~~~~~~~----------------~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 411 (540)
||.| +||+++++.. ..+.. ..|...|++++|+|+|.+|++++.||.|++||+++++++..
T Consensus 173 dg~v-lWd~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 173 YVTL-TYSLVENEIK---QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp SCEE-EEETTTTEEE---EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CCcE-EEECCCCceE---EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 9999 9999987642 22211 12457899999999999999999999999999998877542
Q ss_pred ec-------------------cCccEEEEeecCCC-CC-ceEEEEE----------------------------------
Q 009203 412 HQ-------------------IESKCMSVLPNPCD-FN-LFMVQTG---------------------------------- 436 (540)
Q Consensus 412 ~~-------------------~~~~~~~~~~~~~~-~~-~~~l~~~---------------------------------- 436 (540)
.. ....+.+++|++.. +. ..++++|
T Consensus 249 r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~ 328 (902)
T 2oaj_A 249 RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYY 328 (902)
T ss_dssp ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHH
T ss_pred EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhh
Confidence 10 12246666664321 00 1233333
Q ss_pred ------------------------------------------cCCCeEEEEECCCCcceeeeec----------------
Q 009203 437 ------------------------------------------TPGRQLRLYDIRLRQTEIHAFG---------------- 458 (540)
Q Consensus 437 ------------------------------------------~~dg~v~i~d~~~~~~~~~~~~---------------- 458 (540)
+.||.|++||+.++........
T Consensus 329 ~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~ 408 (902)
T 2oaj_A 329 ANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSM 408 (902)
T ss_dssp HSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEE
T ss_pred cCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEE
Confidence 3345555555543321110000
Q ss_pred ------------------cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc---------cccc
Q 009203 459 ------------------WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI---------RAHQ 511 (540)
Q Consensus 459 ------------------~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~---------~~h~ 511 (540)
....+.+|...+.+++|+|+|++|++|+.||+|++||+..+.......+ .+|.
T Consensus 409 ~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~ 488 (902)
T 2oaj_A 409 AASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE 488 (902)
T ss_dssp EEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS
T ss_pred EEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC
Confidence 0011334555555667789999999999999999999987321111111 1788
Q ss_pred cceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 512 KRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..|++++|+|||++||+|+.||+|+||++
T Consensus 489 ~~V~svafspdg~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 489 LAVDKISFAAETLELAVSIETGDVVLFKY 517 (902)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CceeEEEecCCCCeEEEEecCcEEEEEEe
Confidence 89999999999999999999999999985
No 64
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-36 Score=299.81 Aligned_cols=245 Identities=19% Similarity=0.290 Sum_probs=201.6
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
..|++++|+|| +++|++|+.|+.|+|||+.+++....+ .+|...|.+++|+|++++|+++ +.|++|+
T Consensus 124 ~~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~l~s~----s~d~~v~ 190 (393)
T 1erj_A 124 LYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMIL--------QGHEQDIYSLDYFPSGDKLVSG----SGDRTVR 190 (393)
T ss_dssp CBEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEE----ETTSEEE
T ss_pred eeEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE--------ccCCCCEEEEEEcCCCCEEEEe----cCCCcEE
Confidence 35999999996 999999999999999999987765555 5899999999999999999999 9999999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccce--eecccCCcceeEEE
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA--LHRNLHSSAVMGVA 381 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~v~~l~ 381 (540)
+||+.++ .+...+. +...+.+++|+|.++.+|++|+.|+.|++||++++........ ....+|...|.+++
T Consensus 191 iwd~~~~---~~~~~~~----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 191 IWDLRTG---QCSLTLS----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp EEETTTT---EEEEEEE----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred EEECCCC---eeEEEEE----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence 9999986 4444444 2456999999997899999999999999999998764221110 01146899999999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCe------------ee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRA------------DF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
|+|+|++|++++.|+.|++||+++... .. ...+...+.++.++|++ .+|++|+.|+.|++||+.
T Consensus 264 ~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND---EYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG---CEEEEEETTSEEEEEETT
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC---CEEEEEeCCCeEEEEECC
Confidence 999999999999999999999976432 11 23345678899999877 699999999999999999
Q ss_pred CCcceeeeeccccccCccccCeEEEEEcC------CCCEEEEEeCCCcEEEEeccC
Q 009203 449 LRQTEIHAFGWKQESSESQSALINQSWSP------DGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~g~~l~sg~~dg~i~iwd~~~ 498 (540)
++.... .+.+|...|.+++|++ ++++|++|+.||.|+||++..
T Consensus 341 ~~~~~~-------~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 341 SGNPLL-------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TCCEEE-------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCeEEE-------EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 877543 4467999999999986 688999999999999999875
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-37 Score=309.81 Aligned_cols=280 Identities=18% Similarity=0.217 Sum_probs=229.4
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
..+++++|+|+ +.+|++|+.||.|++||+.+.+....+ ..| ..+....|++++++|+++ +.|+.|+
T Consensus 57 ~~~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~l~~~----~~dg~i~ 122 (420)
T 3vl1_A 57 DAGKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDGSKML--------KRA-DYTAVDTAKLQMRRFILG----TTEGDIK 122 (420)
T ss_dssp BCCTTCEEEEE-ETTEEEEEETTEEEEEECCSEETTTTS--------CSC-CEEEEEEECSSSCEEEEE----ETTSCEE
T ss_pred ccccceeeeec-CCeEEEEEcCCcEEEEEecccceeeEE--------ecC-CceEEEEEecCCCEEEEE----ECCCCEE
Confidence 34568999996 889999999999999999876654433 233 345556789999999999 9999999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
+||+.++ .....+.. |.+.|.+++|+| ++.+|++|+.|+.|++||+.+++. ...+ .+|...|.+++|+
T Consensus 123 iwd~~~~---~~~~~~~~---h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~---~~~~--~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 123 VLDSNFN---LQREIDQA---HVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSN---PRTL--IGHRATVTDIAII 190 (420)
T ss_dssp EECTTSC---EEEEETTS---SSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCC---CEEE--ECCSSCEEEEEEE
T ss_pred EEeCCCc---ceeeeccc---ccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcC---ceEE--cCCCCcEEEEEEc
Confidence 9999875 45555544 678899999999 999999999999999999998875 2333 4699999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeeecc----CccEEEE---------------------eecCCCCCceEEEEEcC
Q 009203 384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQI----ESKCMSV---------------------LPNPCDFNLFMVQTGTP 438 (540)
Q Consensus 384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~---------------------~~~~~~~~~~~l~~~~~ 438 (540)
|++.+|++++.||.|++||+++++.+..... ...+.++ .|+|++ .+|++|+.
T Consensus 191 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~ 267 (420)
T 3vl1_A 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG---KYVIAGHV 267 (420)
T ss_dssp TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT---EEEEEEET
T ss_pred CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC---CEEEEEcC
Confidence 9999999999999999999999887665432 2333343 445555 79999999
Q ss_pred CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccCCCCcccccccc-cccceeE
Q 009203 439 GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFK 516 (540)
Q Consensus 439 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~ 516 (540)
||.|++||++++...... ...|...|++++|+|++. +|++|+.||.|++||+.+. ..++..+.. |...|++
T Consensus 268 dg~i~i~d~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~ 340 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQL------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP-ECPVGEFLINEGTPINN 340 (420)
T ss_dssp TSCEEEEETTTCCEEEEE------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-TSCSEEEEESTTSCEEE
T ss_pred CCeEEEEECCCCceeEEc------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC-cCchhhhhccCCCCceE
Confidence 999999999987754432 246788999999999999 9999999999999999974 345677776 6677888
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 517 AVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 517 l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+.| +++++|++++.||.|++|++
T Consensus 341 ~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 341 VYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp EEE-ETTEEEEEETTTEEEEEEEE
T ss_pred EEe-CCCCEEEEecCCccEEEEec
Confidence 855 57889999999999999984
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-36 Score=300.42 Aligned_cols=283 Identities=18% Similarity=0.235 Sum_probs=231.9
Q ss_pred cccCc--eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 221 LHKRK--LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 221 ~h~~~--V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+|... +.+++|++ ..+++++.||.|++||+.+++....+. ..|...|.+++|+|++++|+++ +.
T Consensus 89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~~~----~~ 154 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAE-------TDESTYVASVKWSHDGSFLSVG----LG 154 (401)
T ss_dssp TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEE-------CCTTCCEEEEEECTTSSEEEEE----ET
T ss_pred CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeee-------cCCCCCEEEEEECCCCCEEEEE----CC
Confidence 45544 45566664 347778899999999999887654442 2478899999999999999999 99
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
||.|++||+.++ ..+..+.. |...|.+++|++ .+|++|+.||.|++||++.... ......+|...|.
T Consensus 155 dg~i~iwd~~~~---~~~~~~~~---~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~ 221 (401)
T 4aez_A 155 NGLVDIYDVESQ---TKLRTMAG---HQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH----QIGTLQGHSSEVC 221 (401)
T ss_dssp TSCEEEEETTTC---CEEEEECC---CSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEE
T ss_pred CCeEEEEECcCC---eEEEEecC---CCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc----eeeEEcCCCCCee
Confidence 999999999876 44666654 678899999954 7999999999999999985442 2333356999999
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEc--CCCeEEEEECCCCcceee
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGT--PGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~v~i~d~~~~~~~~~ 455 (540)
+++|+|++.+|++++.||.|++||++++..+... .+...+.++.|+|++. .++++++ .|+.|++||+.++.....
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--~ll~~~~gs~d~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--NLLATGGGTMDKQIHFWNAATGARVNT 299 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--TEEEEECCTTTCEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--CEEEEecCCCCCEEEEEECCCCCEEEE
Confidence 9999999999999999999999999998887664 4567788999999764 3677765 899999999998765432
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITS--GSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
. .+...|.+++|+|++++|++ |+.||.|++||+.+........+.+|...|.+++|+|+|++|++++.||
T Consensus 300 ~--------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 300 V--------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp E--------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred E--------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 2 24568999999999999998 5589999999999743334445778999999999999999999999999
Q ss_pred cEEEEeC
Q 009203 534 NIGLHKI 540 (540)
Q Consensus 534 ~v~iw~l 540 (540)
.|++|++
T Consensus 372 ~i~iw~~ 378 (401)
T 4aez_A 372 NLKFWRV 378 (401)
T ss_dssp EEEEEEC
T ss_pred cEEEEEC
Confidence 9999986
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.1e-36 Score=324.48 Aligned_cols=328 Identities=14% Similarity=0.145 Sum_probs=267.1
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccc
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLH 222 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h 222 (540)
...+.+|...|.+++++|..+ .+++++.|+.|++|+.. ..+.+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~-------------------------------~la~~~~~g~v~iwd~~~~~~~~~~~~~ 54 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP-------------------------------WVLTTLYSGRVEIWNYETQVEVRSIQVT 54 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS-------------------------------EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ceeeecCCCceEEEEECCCCC-------------------------------EEEEEeCCCEEEEEECCCCceEEEEecC
Confidence 456678999999999999854 46777889999999754 457899
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
.+.|++++|+|+ +.+|++|+.||.|+|||+.+++....+ .+|...|++++|+|++++|+++ +.||.|
T Consensus 55 ~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~----~~dg~i 121 (814)
T 3mkq_A 55 ETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDF--------EAHPDYIRSIAVHPTKPYVLSG----SDDLTV 121 (814)
T ss_dssp SSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECSSSSEEEEE----ETTSEE
T ss_pred CCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEE--------ecCCCCEEEEEEeCCCCEEEEE----cCCCEE
Confidence 999999999996 999999999999999999998876666 4788999999999999999999 999999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
++||+.++ ......+.. |...|.+++|+|.++..|++++.||.|++||+.++.. .......+...+.+++|
T Consensus 122 ~vw~~~~~--~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~----~~~~~~~~~~~v~~~~~ 192 (814)
T 3mkq_A 122 KLWNWENN--WALEQTFEG---HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQERGVNYVDY 192 (814)
T ss_dssp EEEEGGGT--SEEEEEEEC---CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC----SEEEECCCTTCCCEEEE
T ss_pred EEEECCCC--ceEEEEEcC---CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc----eeEEecCCCCCEEEEEE
Confidence 99999875 344555554 5678999999996778999999999999999988764 22222335588999999
Q ss_pred cc--CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 383 MQ--QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 383 s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
+| ++.+|++++.||.|++||+.+++.+.... +...+.++.|+|++ .++++++.||.|++||+.++....
T Consensus 193 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~v~vwd~~~~~~~~----- 264 (814)
T 3mkq_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL---PIIISGSEDGTLKIWNSSTYKVEK----- 264 (814)
T ss_dssp CCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCSEEE-----
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCcEEE-----
Confidence 99 99999999999999999999988776654 55778899999987 699999999999999999876433
Q ss_pred ccccCccccCeEEEEEcCCCC--EEEEEeCCCcEEEEeccCCC--------Cccc-------------------------
Q 009203 460 KQESSESQSALINQSWSPDGL--YITSGSADPVIHLFDIRYSA--------NKPS------------------------- 504 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~--~l~sg~~dg~i~iwd~~~~~--------~~~~------------------------- 504 (540)
.+..|...+.+++|+|+|. +++++ .++.+.+|++.... +..+
T Consensus 265 --~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 265 --TLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp --EECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred --EeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence 3356778999999999987 45555 46668888876421 0000
Q ss_pred --------ccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 505 --------QSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 505 --------~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..+..+...+.+++|+|+|++|++++ ||.+.+|++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred CccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence 01123444678999999999999888 899999974
No 68
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=299.28 Aligned_cols=300 Identities=18% Similarity=0.193 Sum_probs=237.0
Q ss_pred hhcccccCceEEEEEec-CCCcEEEEEeCCceEEEEEcCCCCCcceeeccc-----ccCCCCCCCCceeEEEec-CCCeE
Q 009203 217 HVSSLHKRKLRSLSLNP-VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT-----DCLSPKHRRWPEDIAWHP-QGNSL 289 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~sp-d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~-----~~~~~~h~~~V~~~~~~~-~~~~l 289 (540)
.++.+|.+.|++++|+| + +.+|++|+.||.|++||+.++.....+.... .....+|...|.+++|+| ++.+|
T Consensus 37 ~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 45789999999999999 6 8999999999999999999887655543211 011136999999999999 77899
Q ss_pred EEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCccccce
Q 009203 290 FSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSWKPKA 367 (540)
Q Consensus 290 ~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 367 (540)
+++ +.|+.|++||+.++ .....+. +...+.++.|+|. ++.++++++.|+.|++||++++.. ...
T Consensus 116 ~s~----~~d~~i~iwd~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~ 181 (408)
T 4a11_B 116 TSS----SFDKTLKVWDTNTL---QTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC---SHI 181 (408)
T ss_dssp EEE----ETTSEEEEEETTTT---EEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC---CEE
T ss_pred EEE----eCCCeEEEeeCCCC---ccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce---eee
Confidence 999 99999999999986 4455544 3466999999983 233899999999999999998875 222
Q ss_pred eecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCe-eee----------------eccCccEEEEeecCCCCC
Q 009203 368 LHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRA-DFK----------------HQIESKCMSVLPNPCDFN 429 (540)
Q Consensus 368 ~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~ 429 (540)
+ ..|...|.+++|+|++. +|++++.||.|++||++++.. +.. ..+...+.++.|+|++
T Consensus 182 ~--~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 257 (408)
T 4a11_B 182 L--QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-- 257 (408)
T ss_dssp E--CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS--
T ss_pred e--cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC--
Confidence 3 45899999999999998 588999999999999987652 111 2345778999999987
Q ss_pred ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203 430 LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 430 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
.+|++++.||.|++||+.++.......... .......+........+..+++++.|+.|++||+.+ +.++..+.+
T Consensus 258 -~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~ 332 (408)
T 4a11_B 258 -LHLLTVGTDNRMRLWNSSNGENTLVNYGKV--CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS--GEQITMLKG 332 (408)
T ss_dssp -SEEEEEETTSCEEEEETTTCCBCCCCCCCC--CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT--CCEEEEECC
T ss_pred -CEEEEecCCCeEEEEECCCCccceeccccc--cccccccceeEEecCCCceEEEEecCCEEEEEECcC--Ccceeeecc
Confidence 699999999999999999877543322111 111111222222233456677778899999999998 788999999
Q ss_pred cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|.+.|++++|+|++++|++++.||.|++||+
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 9999999999999999999999999999985
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=301.78 Aligned_cols=289 Identities=14% Similarity=0.166 Sum_probs=233.8
Q ss_pred ccccCceEEEEEecCCCc-EEEEEeCCceEEEEEc----CCCCC------cceeeccccc--CCCCCCCCceeEEEecCC
Q 009203 220 SLHKRKLRSLSLNPVNEQ-LFVTSALDGVIRLWQL----QSRGS------GASLLSTTDC--LSPKHRRWPEDIAWHPQG 286 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~----~~~~~------~~~~~~~~~~--~~~~h~~~V~~~~~~~~~ 286 (540)
..|.+.|++++|+|+ +. +||+|+.||.|++|++ .+++. ...+...... ...+|...|++++|+|++
T Consensus 42 ~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 356699999999996 77 9999999999999999 77762 2233221110 012367899999999999
Q ss_pred CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203 287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK 366 (540)
Q Consensus 287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 366 (540)
++|+++ +.|+.|++||.. + ..+..+.. |...|.+++|+| ++.+|++++.|+.|++||+.+++.. .
T Consensus 121 ~~l~~~----~~dg~i~i~~~~-~---~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~---~ 185 (425)
T 1r5m_A 121 NSIVTG----VENGELRLWNKT-G---ALLNVLNF---HRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVM---Q 185 (425)
T ss_dssp SEEEEE----ETTSCEEEEETT-S---CEEEEECC---CCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEE---E
T ss_pred CEEEEE----eCCCeEEEEeCC-C---CeeeeccC---CCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEE---E
Confidence 999999 999999999943 3 44555554 678899999999 9999999999999999999987642 2
Q ss_pred eeecccCCcc---------------eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCc
Q 009203 367 ALHRNLHSSA---------------VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 367 ~~~~~~~~~~---------------v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 430 (540)
.+ ..+... +.+++|+++ ..+++++.+|.|++||+++++.+... .+...+.++.|+|++
T Consensus 186 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--- 259 (425)
T 1r5m_A 186 HF--ELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN--- 259 (425)
T ss_dssp EE--CCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT---
T ss_pred Ee--eccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC---
Confidence 22 224444 999999987 45888999999999999998876554 456778899999987
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
.+|++++.|+.|++||+.+..... .+.+|...|.+++|+|++ +|++++.||.|++||+.+ +..+..+..|
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~~~~~~~~ 329 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQN-------CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ--NTLLALSIVD 329 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCSE-------EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT--TEEEEEEECT
T ss_pred CEEEEEcCCCEEEEEECCCCccce-------EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC--CcEeEecccC
Confidence 689999999999999999766433 345688899999999999 999999999999999987 7788888899
Q ss_pred ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 511 QKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
...|.+++|+|++++|++++.||.|++||+
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 999999999999999999999999999986
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.9e-37 Score=305.11 Aligned_cols=293 Identities=14% Similarity=0.121 Sum_probs=223.6
Q ss_pred CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhc
Q 009203 147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVS 219 (540)
Q Consensus 147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~ 219 (540)
......+|...|++++++|..+ ..+++++.|++|++|+.. ..+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~------------------------------~~lasGs~dg~i~lWd~~~~~~~~~~~~ 160 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHP------------------------------STVAVGSKGGDIMLWNFGIKDKPTFIKG 160 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCT------------------------------TCEEEEETTSCEEEECSSCCSCCEEECC
T ss_pred ecccCCCCCCCEEEEEEeCCCC------------------------------CEEEEEeCCCEEEEEECCCCCceeEEEc
Confidence 3445668889999999999743 358899999999999764 235
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
.+|.+.|++|+|+|.++.+|++|+.||+|+|||+..... ..+... ..+...+.+++|+|++.+|++| +.|
T Consensus 161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~l~~g----~~d 230 (435)
T 4e54_B 161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASS-----DTINIWFCSLDVSASSRMVVTG----DNV 230 (435)
T ss_dssp CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECC-----SSCSCCCCCEEEETTTTEEEEE----CSS
T ss_pred cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEecc-----CCCCccEEEEEECCCCCEEEEE----eCC
Confidence 799999999999996689999999999999999976432 222111 2455678899999999999999 999
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
|.|++||+... .+..+.+ |...|.+++|+|....+|++|+.|+.|++||+++........ ...+|...|++
T Consensus 231 g~i~~wd~~~~----~~~~~~~---h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~--~~~~h~~~v~~ 301 (435)
T 4e54_B 231 GNVILLNMDGK----ELWNLRM---HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL--YSLPHRHPVNA 301 (435)
T ss_dssp SBEEEEESSSC----BCCCSBC---CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS--BCCBCSSCEEE
T ss_pred CcEeeeccCcc----eeEEEec---ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE--Eeeeccccccc
Confidence 99999999742 2334443 678899999999445588899999999999999876532222 22469999999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------CccEEEEeecCCCCCceEEEEE------------cCCC
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------ESKCMSVLPNPCDFNLFMVQTG------------TPGR 440 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~------------~~dg 440 (540)
++|+|+|.+|++++.||.|++||+.++........ ........|+|.+ .+++++ ..++
T Consensus 302 ~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~ 378 (435)
T 4e54_B 302 ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY---NLIVVGRYPDPNFKSCTPYELR 378 (435)
T ss_dssp CCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS---SCEEEECCCCTTSCCSSTTCCC
T ss_pred eeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC---CEEEEEEcCCCCeEEEEecCCC
Confidence 99999999999999999999999998776443211 1122334455543 233333 3456
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEE-EEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQ-SWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.|++||..++...... ..+|...|.++ +|+|+|.+|++|+ |+.|+||++..
T Consensus 379 ~i~iwd~~~g~~~~~l------~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 379 TIDVFDGNSGKMMCQL------YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp CEEEECSSSCCEEEEE------CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEEEECCCCcEEEEE------eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 8999999988754432 24677888887 6999999999886 78999999987
No 71
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-36 Score=291.43 Aligned_cols=286 Identities=12% Similarity=0.157 Sum_probs=236.0
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
|.++|.+++|+|| |++++++..++.+.+|........... .+|...|.+++|+|++++|+++ + |+.
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~~~----~-dg~ 73 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQINT--------LNHGEVVCAVTISNPTRHVYTG----G-KGC 73 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEEEE--------ECCSSCCCEEEECSSSSEEEEE----C-BSE
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccCCcccccee--------ccCCCceEEEEEecCCcEEEEc----C-CCe
Confidence 5578999999996 899988887777766654432221111 3789999999999999999998 7 999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
|++||+.++.....+..+... .|...|.+++|+| ++++|++++.||.|++||+.+++. ........|...|.+++
T Consensus 74 i~iw~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 74 VKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTP---RIKAELTSSAPACYALA 148 (337)
T ss_dssp EEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC-----EEEEEEECSSSCEEEEE
T ss_pred EEEEECCCCCceeeeeccccc-CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCc---ceeeecccCCCceEEEE
Confidence 999999876544444444322 2567899999999 999999999999999999998763 12233355889999999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
|+|+++++++++.||.|++||+++++.+.... +...+.++.|+|++ .++++++.||.|++||+++++.....
T Consensus 149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~---- 221 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG---TKLWTGGLDNTVRSWDLREGRQLQQH---- 221 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC---CEEEEEecCCcEEEEECCCCceEeee----
Confidence 99999999999999999999999988776654 46778999999987 68999999999999999987643321
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+...+.+++|+|++++|++++.||.|++||+.. .. ...+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK--PD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--SC-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CC-eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 3567899999999999999999999999999996 33 4467789999999999999999999999999999985
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-36 Score=327.29 Aligned_cols=288 Identities=18% Similarity=0.205 Sum_probs=245.2
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
+.+.+|.+.|++++|+|| +.+||+|+.||.|+|||+.+++....+ .+|...|.+++|+|++++|+++
T Consensus 7 ~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~---- 73 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSI--------QVTETPVRAGKFIARKNWIIVG---- 73 (814)
T ss_dssp EEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEEEGGGTEEEEE----
T ss_pred eeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEE--------ecCCCcEEEEEEeCCCCEEEEE----
Confidence 456899999999999996 999999999999999999988766665 4788999999999999999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.||.|++||+.++ ..+..+.. |.+.|.+++|+| ++.+|++++.||.|++||+.++.. ......+|...
T Consensus 74 ~~dg~i~vw~~~~~---~~~~~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~ 142 (814)
T 3mkq_A 74 SDDFRIRVFNYNTG---EKVVDFEA---HPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWA----LEQTFEGHEHF 142 (814)
T ss_dssp ETTSEEEEEETTTC---CEEEEEEC---CSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSE----EEEEEECCSSC
T ss_pred eCCCeEEEEECCCC---cEEEEEec---CCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCce----EEEEEcCCCCc
Confidence 89999999999986 44555554 678899999999 999999999999999999987632 22233568999
Q ss_pred eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeecc--CccEEEEeecC--CCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQI--ESKCMSVLPNP--CDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
|.+++|+| ++..|++++.||.|++||+.++........ ...+..+.|+| ++ .++++++.||.|++||+.++.
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK---PYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC---CEEEEECTTSEEEEEETTTTE
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC---CEEEEEeCCCEEEEEECCCCc
Confidence 99999999 889999999999999999988776554332 36677888887 55 699999999999999998876
Q ss_pred ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCE-EEEEE
Q 009203 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPL-LISIS 530 (540)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~-l~s~~ 530 (540)
... .+.+|...|++++|+|+|.+|++++.||.|++||+.+ +..+..+..|...|++++|+|++.. +++++
T Consensus 220 ~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 220 CVA-------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST--YKVEKTLNVGLERSWCIATHPTGRKNYIASG 290 (814)
T ss_dssp EEE-------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CSEEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred EEE-------EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence 433 3456888999999999999999999999999999997 7888888889999999999999973 34555
Q ss_pred cCCcEEEEeC
Q 009203 531 SDLNIGLHKI 540 (540)
Q Consensus 531 ~dg~v~iw~l 540 (540)
.|+.+.+|++
T Consensus 291 ~~~~~~~~~~ 300 (814)
T 3mkq_A 291 FDNGFTVLSL 300 (814)
T ss_dssp ETTEEEEEEC
T ss_pred eCCCEEEEEc
Confidence 5777888864
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=286.87 Aligned_cols=290 Identities=14% Similarity=0.182 Sum_probs=243.2
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK 223 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~ 223 (540)
..+.+|...|.++++.|... .+++++.|+.|++|+.. ..+.+|.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~-------------------------------~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 74 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGD-------------------------------LLFSCSKDSSASVWYSLNGERLGTLDGHT 74 (369)
T ss_dssp EEEECCSSCEEEEEECTTSC-------------------------------EEEEEESSSCEEEEETTTCCEEEEECCCS
T ss_pred EEEEEeeceEEEEEEcCCCC-------------------------------EEEEEeCCCEEEEEeCCCchhhhhhhhcC
Confidence 45679999999999998742 46777889999999754 4578999
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC----
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD---- 299 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d---- 299 (540)
+.|++++|+|+ +.+|++++.||.|++||+.+++....+ .|...|.+++|+|++++|+++ +.+
T Consensus 75 ~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~----~~~~~~~ 140 (369)
T 3zwl_B 75 GTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATW---------KSPVPVKRVEFSPCGNYFLAI----LDNVMKN 140 (369)
T ss_dssp SCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEE---------ECSSCEEEEEECTTSSEEEEE----ECCBTTB
T ss_pred CcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEe---------ecCCCeEEEEEccCCCEEEEe----cCCccCC
Confidence 99999999995 899999999999999999988766655 256779999999999999998 777
Q ss_pred -CeEEEEecCCCCCceeEEeecCCC-----Cccc--ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc
Q 009203 300 -SQISVLNLNKTKGRACVTFLDDKP-----HVKG--IINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN 371 (540)
Q Consensus 300 -~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 371 (540)
+.|.+||+........+....... .+.+ .+.+++|+| ++.+|++++.||.|++||+++... ......
T Consensus 141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~ 215 (369)
T 3zwl_B 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYE----YVDSID 215 (369)
T ss_dssp CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTE----EEEEEE
T ss_pred CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcE----eEEEEe
Confidence 999999998764322222211100 1223 799999999 999999999999999999998321 222234
Q ss_pred cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC-----------
Q 009203 372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR----------- 440 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------- 440 (540)
.|...|.+++|+|++.+|++++.||.|++||+++++.+........+..+.++|++ .++++++.++
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~ 292 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLK---EFIILGGGQEAKDVTTTSANE 292 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSS---SEEEEEECCC-----------
T ss_pred cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCC---ceEEEeecCCCceEEEEecCC
Confidence 58899999999999999999999999999999999998888888899999999988 6888888888
Q ss_pred ---eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 441 ---QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 441 ---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.+++||+.++.... .+.+|...|++++|+|+|++|++++.||.|++|++..
T Consensus 293 ~~~~i~~~d~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 293 GKFEARFYHKIFEEEIG-------RVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp --CEEEEEETTTCCEEE-------EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred CcceeEEEecCCCcchh-------heecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 89999999877543 3457889999999999999999999999999999986
No 74
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.5e-37 Score=292.50 Aligned_cols=273 Identities=17% Similarity=0.208 Sum_probs=203.2
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCCCCCCceeEEEec--CCCeEEEE
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSA 292 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~ 292 (540)
.++.+|.+.|++++|+|+ +++||+|+.|++|+|||+.++.. ...+ .+|...|.+++|++ ++++|+++
T Consensus 7 ~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l--------~gH~~~V~~v~~~~~~~~~~l~s~ 77 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADL--------RGHEGPVWQVAWAHPMYGNILASC 77 (316)
T ss_dssp -------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEE--------ECCSSCEEEEEECCGGGSSCEEEE
T ss_pred eecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEE--------cCCCccEEEEEeCCCCCCCEEEEE
Confidence 346799999999999996 99999999999999999987642 2222 58999999999986 48999999
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
+.|++|++||+.++.. .....+.+ |...|.+++|+| + +.+|++|+.|++|++||++.+... . .....
T Consensus 78 ----s~D~~v~iWd~~~~~~-~~~~~~~~---h~~~V~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~-~-~~~~~ 146 (316)
T 3bg1_A 78 ----SYDRKVIIWREENGTW-EKSHEHAG---HDSSVNSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQW-E-VKKIN 146 (316)
T ss_dssp ----ETTSCEEEECCSSSCC-CEEEEECC---CSSCCCEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCE-E-ECCBT
T ss_pred ----ECCCEEEEEECCCCcc-eEEEEccC---CCCceEEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCc-c-eeeee
Confidence 9999999999987532 23444443 678899999999 5 789999999999999999876320 0 01223
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 450 (540)
.+|...|.+++|+|++.. +.+ .+...+. .+. .+.+|++|+.|+.|++||++..
T Consensus 147 ~~h~~~v~~~~~~~~~~~-------~~~--~~~~~~~----------------~~~--~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 147 NAHTIGCNAVSWAPAVVP-------GSL--IDHPSGQ----------------KPN--YIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp TSSSSCBCCCEECCCCCC---------------CCSC----------------CCC--CCCBEECCBTTSBCCEEEECTT
T ss_pred ccccCCcceEEEccccCC-------ccc--ccccccc----------------Ccc--ccceEEEecCCCeEEEEEeCCC
Confidence 568899999999997431 000 0100010 011 1148999999999999999754
Q ss_pred cceeeeeccccccCccccCeEEEEEcCCC----CEEEEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEcCCCC
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPDG----LYITSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWHYSHP 524 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g----~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s~~~~ 524 (540)
..... ...+.+|...|.+++|+|++ .+|++|+.||.|+||++.... ......+..|...|++++|+|+++
T Consensus 200 ~~~~~----~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 275 (316)
T 3bg1_A 200 GQWKE----EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN 275 (316)
T ss_dssp SCEEE----EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC
T ss_pred Cccce----eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC
Confidence 32111 12567899999999999987 889999999999999998621 112344567889999999999999
Q ss_pred EEEEEEcCCcEEEEeC
Q 009203 525 LLISISSDLNIGLHKI 540 (540)
Q Consensus 525 ~l~s~~~dg~v~iw~l 540 (540)
+|++++.||+|+||++
T Consensus 276 ~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 276 ILAVSGGDNKVTLWKE 291 (316)
T ss_dssp CEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCeEEEEEE
Confidence 9999999999999983
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.2e-35 Score=293.33 Aligned_cols=284 Identities=17% Similarity=0.254 Sum_probs=221.4
Q ss_pred EEecCCCCeEEEeccc-----hh--cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HV--SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~--~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
++.+ .|++|++|+.. ++ +.+|.+.|++|+|+|| |.+||+|+.||+|+|||+.+++.+..+ .+|
T Consensus 119 lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~~--------~~h 188 (420)
T 4gga_A 119 LAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNM--------TSH 188 (420)
T ss_dssp EEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------CCC
T ss_pred EEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEEEEE--------eCC
Confidence 4444 38999999764 22 4578889999999996 999999999999999999998776665 588
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
...|.+++|+ +.+|+++ +.|+.+++||.... ...+..+.+ |...+..+.|+| ++.++++++.|+.|++
T Consensus 189 ~~~v~~~s~~--~~~l~sg----s~d~~i~~~d~~~~--~~~~~~~~~---h~~~~~~~~~~~-~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 189 SARVGSLSWN--SYILSSG----SRSGHIHHHDVRVA--EHHVATLSG---HSQEVCGLRWAP-DGRHLASGGNDNLVNV 256 (420)
T ss_dssp SSCEEEEEEE--TTEEEEE----ETTSEEEEEETTSS--SCEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred CCceEEEeeC--CCEEEEE----eCCCceeEeeeccc--ceeeEEecc---cccceeeeeecC-CCCeeeeeeccccceE
Confidence 8999888775 6799999 99999999999875 344555554 677899999999 9999999999999999
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCC-EEEE--EeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLS--AGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (540)
||..+++..... ......|...|.+++|+|++. ++++ |+.|++|++||+.++.+.........+.++.|+|.+.
T Consensus 257 ~~~~~~~~~~~~-~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~-- 333 (420)
T 4gga_A 257 WPSAPGEGGWVP-LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-- 333 (420)
T ss_dssp EESSCCSSCSCC-SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTT--
T ss_pred Eeecccccccee-eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCC--
Confidence 999987643222 122356889999999999654 5554 3579999999999999988888888999999999873
Q ss_pred eEEEE--EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203 431 FMVQT--GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR 508 (540)
Q Consensus 431 ~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 508 (540)
.+++ |+.|+.|++||+.+++... .+.+|...|++++|+|||++|++|+.||+|+|||+.. ..+.....
T Consensus 334 -~lv~~sg~~d~~I~iwd~~~~~~v~-------~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~--~~~~~~~~ 403 (420)
T 4gga_A 334 -ELISGHGFAQNQLVIWKYPTMAKVA-------ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE--LDPARRRE 403 (420)
T ss_dssp -EEEEEECTTTCCEEEEETTTCCEEE-------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC--SSCC----
T ss_pred -eEEEEEecCCCEEEEEECCCCcEEE-------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC--CCccchhh
Confidence 4444 4589999999999887543 4578999999999999999999999999999999986 44555555
Q ss_pred ccccceeEEEE
Q 009203 509 AHQKRVFKAVW 519 (540)
Q Consensus 509 ~h~~~i~~l~~ 519 (540)
.+...+....+
T Consensus 404 ~~~~~~~~~s~ 414 (420)
T 4gga_A 404 REKASAAKSSL 414 (420)
T ss_dssp -----------
T ss_pred hccCCcccccc
Confidence 45444433333
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=303.98 Aligned_cols=290 Identities=12% Similarity=0.210 Sum_probs=219.3
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-------cceeecccccCCCCCC------------CCceeEE
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-------GASLLSTTDCLSPKHR------------RWPEDIA 281 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-------~~~~~~~~~~~~~~h~------------~~V~~~~ 281 (540)
.|.+.|++|+|+|+ +.+||+|+.||.|+||++.++.. ...+.... .+|. ..|.+++
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~----~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF----QSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE----ECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc----ccccccccccccccccCceEEEE
Confidence 47899999999995 99999999999999999987652 01111111 4787 8899999
Q ss_pred EecCC--CeEEEEeecCCCCCeEEEEecCCCCCc------------------------------------eeEEeecCCC
Q 009203 282 WHPQG--NSLFSAHTADSGDSQISVLNLNKTKGR------------------------------------ACVTFLDDKP 323 (540)
Q Consensus 282 ~~~~~--~~l~s~~~~~~~d~~i~vwd~~~~~~~------------------------------------~~~~~~~~~~ 323 (540)
|+|++ .+|+++ +.|+.|++||+.++... .....+ ..
T Consensus 101 ~~~~~~~~~l~s~----s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 174 (447)
T 3dw8_B 101 WLPQKNAAQFLLS----TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF--AN 174 (447)
T ss_dssp ECCCCSSSEEEEE----ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE--CS
T ss_pred EcCCCCcceEEEe----CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe--cc
Confidence 99998 789999 99999999999763110 000111 12
Q ss_pred CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee-----ecccCCcceeEEEeccCC-CEEEEEeCCCe
Q 009203 324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL-----HRNLHSSAVMGVAGMQQK-QIVLSAGADKR 397 (540)
Q Consensus 324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~ 397 (540)
.|...|.+++|+| ++.+|++| .|+.|++||++..... ...+ ...+|...|++++|+|++ .+|++++.||.
T Consensus 175 ~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 175 AHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRS--FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT 250 (447)
T ss_dssp CCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEE--EEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred CCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCce--eeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence 4678899999999 99999998 7999999999843311 1111 235699999999999998 99999999999
Q ss_pred EEEEECCCCCe----eeeeccCc-------------cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 398 IIGFDAGVGRA----DFKHQIES-------------KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 398 i~iwd~~~~~~----~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
|++||++++.. ........ .+.++.|+|++ .+|++++. +.|++||+++.......
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~-~~v~iwd~~~~~~~~~~---- 322 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG---RYMMTRDY-LSVKVWDLNMENRPVET---- 322 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS---SEEEEEES-SEEEEEETTCCSSCSCC----
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC---CEEEEeeC-CeEEEEeCCCCccccce----
Confidence 99999998875 34433332 78999999987 68999988 99999999873322322
Q ss_pred cccCcccc---------------CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-----------------
Q 009203 461 QESSESQS---------------ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR----------------- 508 (540)
Q Consensus 461 ~~~~~~~~---------------~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~----------------- 508 (540)
+.+|.. .+..++|+|+|++|++|+.||.|++||+.++ +.+ .+.
T Consensus 323 --~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~ 397 (447)
T 3dw8_B 323 --YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK--RDI-TLEASRENNKPRTVLKPRKV 397 (447)
T ss_dssp --EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC--CEE-EEECCSTTCCTTCBCCCCCE
T ss_pred --eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC--cce-eeeecccccccccccCCccc
Confidence 223332 1345999999999999999999999999873 222 111
Q ss_pred ----------------ccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 509 ----------------AHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 509 ----------------~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+...|..++|+|++.+|++++.|+ +++|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 398 CASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp ECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 2345789999999999999998776 66664
No 77
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.6e-36 Score=287.48 Aligned_cols=285 Identities=11% Similarity=0.154 Sum_probs=230.1
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~ 296 (540)
+..+|.+.|++++|+|+ +.+|++|+.||.|+||++..+......... .+|...|.+++|+|+++ +|+++
T Consensus 6 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~---- 75 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-----LRYKHPLLCCNFIDNTDLQIYVG---- 75 (342)
T ss_dssp CSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEE-----EECSSCEEEEEEEESSSEEEEEE----
T ss_pred cccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceee-----eecCCceEEEEECCCCCcEEEEE----
Confidence 34689999999999995 899999999999999999877622112111 37889999999999999 99999
Q ss_pred CCCCeEEEEec-CCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC---------CCCccccc
Q 009203 297 SGDSQISVLNL-NKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD---------AEDSWKPK 366 (540)
Q Consensus 297 ~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~ 366 (540)
+.|+.|++||+ .++. ...+... .|...|.+++|+| +.+|++++.|+.|++||+++ ++.. .
T Consensus 76 ~~dg~i~~wd~~~~~~----~~~~~~~-~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~ 145 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPS----FQALTNN-EANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS---N 145 (342)
T ss_dssp ETTSCEEEECSSSSSS----EEECBSC-CCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS---S
T ss_pred cCCCeEEEEEeccCCc----eEecccc-CCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee---e
Confidence 99999999999 7652 2333321 1567899999998 78999999999999999987 5532 1
Q ss_pred eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCee---eeeccCccEEEEeecC-CCCCceEEEEEcCCCe
Q 009203 367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRAD---FKHQIESKCMSVLPNP-CDFNLFMVQTGTPGRQ 441 (540)
Q Consensus 367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~---~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~ 441 (540)
.+ .|...|.+++|+|++ +++++.|+.|++||+++ +... ........+.++.|+| ++ .++++++.||.
T Consensus 146 ~~---~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~---~~l~~~~~dg~ 217 (342)
T 1yfq_A 146 NT---KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ---EGYACSSIDGR 217 (342)
T ss_dssp SS---SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG---CEEEEEETTSE
T ss_pred EE---eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC---CEEEEEecCCc
Confidence 11 278899999999877 99999999999999998 5542 3344567889999999 76 69999999999
Q ss_pred EEEEECCCC-----cceeeeecccc---ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-cc
Q 009203 442 LRLYDIRLR-----QTEIHAFGWKQ---ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QK 512 (540)
Q Consensus 442 v~i~d~~~~-----~~~~~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~ 512 (540)
|++||++.. ......+.... ...+|...|++++|+|++++|++|+.||.|++||+.+ ++.+..+.+| ..
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~h~~ 295 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT--RKKIKNFAKFNED 295 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT--TEEEEECCCCSSS
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc--HhHhhhhhcccCC
Confidence 999999876 12222221000 0113455999999999999999999999999999998 7788889998 99
Q ss_pred ceeEEEEcCCCCEEEEEEcCCc
Q 009203 513 RVFKAVWHYSHPLLISISSDLN 534 (540)
Q Consensus 513 ~i~~l~~s~~~~~l~s~~~dg~ 534 (540)
.|++++ |++++|++++.||.
T Consensus 296 ~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 296 SVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEEEEE--ECSSEEEEEEECTH
T ss_pred CceEec--CCCCeEEEEecCCc
Confidence 999999 99999999999998
No 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=290.66 Aligned_cols=292 Identities=14% Similarity=0.251 Sum_probs=226.0
Q ss_pred hhcccccCceEEEEEecCC--CcEEEEEeCCceEEEEEcCC-CCCc-ceeecccccCCCCCCCCceeEEEecCCCeEEEE
Q 009203 217 HVSSLHKRKLRSLSLNPVN--EQLFVTSALDGVIRLWQLQS-RGSG-ASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSA 292 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~--~~~l~tg~~dg~v~iw~~~~-~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~ 292 (540)
.++.+|.+.|++++|+|++ |.+|++|+.||.|+|||+.+ +... ..+ .+|...|.+++|+|++++|+++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ--------QMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE--------EECSSCEEEEEECTTSSEEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe--------ccccCCEEEEEECcCCCEEEEE
Confidence 3568999999999999964 69999999999999999987 3322 222 4788999999999999999999
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE--eCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF--LPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
+.|+.|++||+.++ ....... |...|.+++| +| ++.+|++++.||.|++||+++++. ...+.
T Consensus 105 ----~~dg~v~iwd~~~~---~~~~~~~----~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~- 168 (368)
T 3mmy_A 105 ----SCDKTAKMWDLSSN---QAIQIAQ----HDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNP---MMVLQ- 168 (368)
T ss_dssp ----ETTSEEEEEETTTT---EEEEEEE----CSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSC---SEEEE-
T ss_pred ----cCCCcEEEEEcCCC---Cceeecc----ccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcE---EEEEe-
Confidence 99999999999976 3344332 5788999999 88 889999999999999999998875 22222
Q ss_pred ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203 371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLY 445 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 445 (540)
....+.++.+. +..+++++.++.+++||++....... ......+..+.+.+.. ....+++++.||.|++|
T Consensus 169 --~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 169 --LPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-KPTGFALGSIEGRVAIH 243 (368)
T ss_dssp --CSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-CEEEEEEEETTSEEEEE
T ss_pred --cCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-CCCeEEEecCCCcEEEE
Confidence 23456677666 46888999999999999987654332 1122334444444332 11359999999999999
Q ss_pred ECCCCcc--eeeee-ccc-----cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEE
Q 009203 446 DIRLRQT--EIHAF-GWK-----QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKA 517 (540)
Q Consensus 446 d~~~~~~--~~~~~-~~~-----~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l 517 (540)
|++.... ....+ .+. ....+|...|++++|+|++++|++|+.||.|++||+.+ +.++..+.+|...|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA--RTKLKTSEQLDQPISAC 321 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT--TEEEEECCCCSSCEEEE
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC--CcEEEEecCCCCCceEE
Confidence 9987642 11111 000 01122333799999999999999999999999999997 78888999999999999
Q ss_pred EEcCCCCEEEEEEcCCcEEEEe
Q 009203 518 VWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 518 ~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
+|+|+|++|++++.|+..+.|+
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGG
T ss_pred EECCCCCeEEEEeccccccccc
Confidence 9999999999999998655443
No 79
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.6e-35 Score=294.31 Aligned_cols=275 Identities=18% Similarity=0.196 Sum_probs=231.5
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
.+|...|+|++| | +.+|++|+.||.|++||+.+++....+ .+|...|.+++| ++++|++| +.|
T Consensus 130 ~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~sg----~~d 192 (435)
T 1p22_A 130 SETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRIL--------TGHTGSVLCLQY--DERVIITG----SSD 192 (435)
T ss_dssp CSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEE--------CCCSSCEEEEEC--CSSEEEEE----ETT
T ss_pred cCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeCCCCeEEEEE--------cCCCCcEEEEEE--CCCEEEEE----cCC
Confidence 467788999988 3 789999999999999999988776665 589999999999 78899999 999
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
|.|++||+.++ ..+..+.. |...|.+++|++ ..+++|+.||.|++||+.++...... ....+|...|.+
T Consensus 193 g~i~vwd~~~~---~~~~~~~~---h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~ 261 (435)
T 1p22_A 193 STVRVWDVNTG---EMLNTLIH---HCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLR--RVLVGHRAAVNV 261 (435)
T ss_dssp SCEEEEESSSC---CEEEEECC---CCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEE--EEECCCSSCEEE
T ss_pred CeEEEEECCCC---cEEEEEcC---CCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceee--eEecCCCCcEEE
Confidence 99999999987 45666664 677899999965 59999999999999999987642111 223569999999
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 458 (540)
++| +++++++++.||.|++||+++++.+.... +...+.++.+++ .++++|+.||.|++||++++....
T Consensus 262 ~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~g~~dg~i~iwd~~~~~~~~---- 330 (435)
T 1p22_A 262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-----RLVVSGSSDNTIRLWDIECGACLR---- 330 (435)
T ss_dssp EEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-----TEEEEEETTSCEEEEETTTCCEEE----
T ss_pred EEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC-----CEEEEEeCCCeEEEEECCCCCEEE----
Confidence 999 68999999999999999999998876654 456777888854 489999999999999999876543
Q ss_pred cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC-------cccccccccccceeEEEEcCCCCEEEEEEc
Q 009203 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN-------KPSQSIRAHQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~-------~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
.+.+|...|.+++| ++.+|++|+.||.|++||+..... .++..+.+|.+.|++++| ++.+|++++.
T Consensus 331 ---~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 ---VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp ---EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS
T ss_pred ---EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC
Confidence 44678899999999 788999999999999999976211 156778899999999999 7889999999
Q ss_pred CCcEEEEeC
Q 009203 532 DLNIGLHKI 540 (540)
Q Consensus 532 dg~v~iw~l 540 (540)
||+|++||+
T Consensus 404 Dg~i~iwd~ 412 (435)
T 1p22_A 404 DDTILIWDF 412 (435)
T ss_dssp SSEEEEEC-
T ss_pred CCEEEEEEC
Confidence 999999986
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-34 Score=286.02 Aligned_cols=264 Identities=16% Similarity=0.269 Sum_probs=221.1
Q ss_pred EEecCCCCeEEEeccc-----hhc-ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HVS-SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~~-~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
+.+++.|+.|++|+.. .++ ..|.+.|++++|+|+ +.+|++|+.||.|++||+.+++....+ .+|.
T Consensus 106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~ 176 (401)
T 4aez_A 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVESQTKLRTM--------AGHQ 176 (401)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------CCCS
T ss_pred EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcCCeEEEEe--------cCCC
Confidence 4456679999999764 223 348999999999995 999999999999999999988766665 5889
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
..|.+++|+ +++|+++ +.|+.|++||+... ......+.. |.+.|.+++|+| ++.+|++|+.|+.|++|
T Consensus 177 ~~v~~~~~~--~~~l~~~----~~dg~i~i~d~~~~--~~~~~~~~~---~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 177 ARVGCLSWN--RHVLSSG----SRSGAIHHHDVRIA--NHQIGTLQG---HSSEVCGLAWRS-DGLQLASGGNDNVVQIW 244 (401)
T ss_dssp SCEEEEEEE--TTEEEEE----ETTSEEEEEETTSS--SCEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred CceEEEEEC--CCEEEEE----cCCCCEEEEecccC--cceeeEEcC---CCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence 999999994 5799999 99999999999854 244555554 678899999999 99999999999999999
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCC-EEEEEe--CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLSAG--ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (540)
|++++.. ......|...|.+++|+|++. ++++++ .|+.|++||+++++.+........+.++.|+|++ .
T Consensus 245 d~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~---~ 316 (401)
T 4aez_A 245 DARSSIP-----KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS---K 316 (401)
T ss_dssp ETTCSSE-----EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSS---S
T ss_pred cCCCCCc-----cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCC---C
Confidence 9998764 222346899999999999765 555554 6999999999999998888888899999999987 5
Q ss_pred EEEE--EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 432 MVQT--GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 432 ~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
++++ |+.||.|++||+.++...... .+.+|...|.+++|+|+|.+|++++.||.|++|++.+
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~-----~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQV-----DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEE-----EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred eEEEEeecCCCcEEEEecCCccceeEE-----EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 6777 568999999999876533221 3467889999999999999999999999999999997
No 81
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.6e-35 Score=285.22 Aligned_cols=290 Identities=15% Similarity=0.112 Sum_probs=227.2
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhc--c
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVS--S 220 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~--~ 220 (540)
...+.+|...|.++.+.|..+ ..+++++.|++|++|+.. ..+ .
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~------------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 115 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHP------------------------------TTVAVGSKGGDIILWDYDVQNKTSFIQGM 115 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCT------------------------------TEEEEEEBTSCEEEEETTSTTCEEEECCC
T ss_pred EEeccCCCCCEEEEEECCCCC------------------------------CEEEEEcCCCeEEEEeCCCcccceeeecC
Confidence 456678999999999998742 257788889999999765 223 4
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
+|.+.|++++|+|+++.+|++|+.|+.|++||+.. .....+... .+|...|.+++|+|++++|+++ +.|+
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~----~~d~ 185 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKT-----DSWDYWYCCVDVSVSRQMLATG----DSTG 185 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECC-----CCSSCCEEEEEEETTTTEEEEE----ETTS
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEecc-----CCCCCCeEEEEECCCCCEEEEE----CCCC
Confidence 79999999999995489999999999999999985 333333221 3566889999999999999999 9999
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
.|++||+. + ..+..+.. |...|.+++|+| ++. +|++|+.|+.|++||+++.......... ..|...|.+
T Consensus 186 ~i~i~d~~-~---~~~~~~~~---h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~ 255 (383)
T 3ei3_B 186 RLLLLGLD-G---HEIFKEKL---HKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAE--MPHEKPVNA 255 (383)
T ss_dssp EEEEEETT-S---CEEEEEEC---SSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--EECSSCEEE
T ss_pred CEEEEECC-C---CEEEEecc---CCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--ecCCCceEE
Confidence 99999995 3 44555554 678899999999 777 9999999999999999984421112222 258999999
Q ss_pred EEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeecc------------------CccEEEEeecCCCCCceEEEEEcCCC
Q 009203 380 VAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQI------------------ESKCMSVLPNPCDFNLFMVQTGTPGR 440 (540)
Q Consensus 380 l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~dg 440 (540)
++|+| ++.+|++++.|+.|++||++++........ ......+.++|++ .+ +|+.|+
T Consensus 256 ~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg---~~--s~s~d~ 330 (383)
T 3ei3_B 256 AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD---QL--LLNDKR 330 (383)
T ss_dssp EEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT---TT--CTTCCC
T ss_pred EEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCc---cc--ccCCCC
Confidence 99999 999999999999999999998766433221 1344456666665 23 788999
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.|++||+.+++...... ...|...+..++|+|+|++|++|+ ||.|+|||+++
T Consensus 331 ~i~iwd~~~~~~~~~l~-----~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLR-----DPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEEC-----BTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeec-----CCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 99999999887543221 122567788889999999999997 99999999874
No 82
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-34 Score=291.92 Aligned_cols=283 Identities=16% Similarity=0.172 Sum_probs=233.3
Q ss_pred hcccccCce-EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 218 VSSLHKRKL-RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V-~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.+.+|.+.| +++.|+ +.+|++|+.||+|++||+.+++....+ .+|...|.+++|++++ .|+++
T Consensus 116 ~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~~~~--------~~h~~~V~~l~~~~~~-~l~s~---- 179 (464)
T 3v7d_B 116 TLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQL--------SGHDGGVWALKYAHGG-ILVSG---- 179 (464)
T ss_dssp EEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECSTT-EEEEE----
T ss_pred EEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEEEEE--------eCCCcCEEEEEEcCCC-EEEEE----
Confidence 357898885 676664 469999999999999999998766665 5899999999999988 89999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC-CCCCEEEEEecCCcEEEEecCCCCCcccc----------
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP-WENPCFATGGSDHAVVLWSERDAEDSWKP---------- 365 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------- 365 (540)
+.||.|++||+.++ ..+..+.+ |.+.|.+++|++ .++.+|++|+.||.|++||+.++......
T Consensus 180 s~dg~i~vwd~~~~---~~~~~~~~---h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 180 STDRTVRVWDIKKG---CCTHVFEG---HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp ETTSCEEEEETTTT---EEEEEECC---CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred eCCCCEEEEECCCC---cEEEEECC---CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 99999999999986 55666664 678899999984 17789999999999999999987642211
Q ss_pred --------ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEE
Q 009203 366 --------KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 366 --------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 436 (540)
......+|...|.++ +++++++++++.||.|++||+++++.+.... +...+.++.++|++ .++++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~sg 328 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER---KRCISA 328 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT---TEEEEE
T ss_pred eccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC---CEEEEE
Confidence 012235688888877 5678999999999999999999988877654 56778899999987 689999
Q ss_pred cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE
Q 009203 437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK 516 (540)
Q Consensus 437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~ 516 (540)
+.||.|++||+.+++... .+.+|...|.+++|+ +.+|++|+.||.|++||+.+ ....... .|...+..
T Consensus 329 ~~dg~i~vwd~~~~~~~~-------~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~--~~~~~~~-~~~~~~~~ 396 (464)
T 3v7d_B 329 SMDTTIRIWDLENGELMY-------TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND--YSRKFSY-HHTNLSAI 396 (464)
T ss_dssp ETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT--CCEEEEE-ECTTCCCE
T ss_pred eCCCcEEEEECCCCcEEE-------EEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC--Cceeeee-cCCCCccE
Confidence 999999999999876533 446789999999997 68999999999999999997 3433333 36667888
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 517 AVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 517 l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++|++++.+|++|+ ||.|++||+
T Consensus 397 ~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 397 TTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp EEEEECSSEEEEEE-TTEEEEEET
T ss_pred EEEEeCCCEEEEec-CCeEEEEEC
Confidence 99999999999998 999999995
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.2e-34 Score=284.05 Aligned_cols=294 Identities=12% Similarity=0.073 Sum_probs=234.0
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----------h
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----------H 217 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----------~ 217 (540)
..+.+|...|.++++.|. .+++++.|++|++|+.. .
T Consensus 10 ~~~~~h~~~i~~~~~~~~---------------------------------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 56 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACNS---------------------------------FTVSCSGDGYLKVWDNKLLDNENPKDKSY 56 (397)
T ss_dssp EESSCSSSCEEEEEECSS---------------------------------EEEEEETTSEEEEEESBCCTTCCGGGGEE
T ss_pred hhhhhhhcCeEEEEecCC---------------------------------eEEEEcCCCEEEEEECCCcccccCCCcce
Confidence 345689999999998773 57788889999999654 2
Q ss_pred hcccccCceEEEEEecC---CC---cEEEEEeCCceEEEEEcCCCCC-----cceeecccccCCCCC-----CCCceeEE
Q 009203 218 VSSLHKRKLRSLSLNPV---NE---QLFVTSALDGVIRLWQLQSRGS-----GASLLSTTDCLSPKH-----RRWPEDIA 281 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd---~~---~~l~tg~~dg~v~iw~~~~~~~-----~~~~~~~~~~~~~~h-----~~~V~~~~ 281 (540)
.+.+|...|++++|+|+ ++ .+|++|+.||.|++|++.+++. ...+ .+| ...|.+++
T Consensus 57 ~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~ 128 (397)
T 1sq9_A 57 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL--------DLLDSDMKKHSFWALK 128 (397)
T ss_dssp EEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE--------CCSCTTGGGSCEEEEE
T ss_pred EEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee--------cccccccCCCcEEEEE
Confidence 36799999999999993 27 8999999999999999998775 3333 355 58899999
Q ss_pred Ee----cCCCe-EEEEeecCCCCCeEEEEecCC------CCCce--eEEeec----CCCCcccceeEEEEeCCCCCEEEE
Q 009203 282 WH----PQGNS-LFSAHTADSGDSQISVLNLNK------TKGRA--CVTFLD----DKPHVKGIINSIIFLPWENPCFAT 344 (540)
Q Consensus 282 ~~----~~~~~-l~s~~~~~~~d~~i~vwd~~~------~~~~~--~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~s 344 (540)
|+ |++++ |+++ +.|+.|++||+.+ +.... ....+. ....|...|.+++|+| ++ +|++
T Consensus 129 ~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~ 202 (397)
T 1sq9_A 129 WGASNDRLLSHRLVAT----DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIAT 202 (397)
T ss_dssp EECCC----CEEEEEE----ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEE
T ss_pred EeeccCCCCceEEEEE----eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEE
Confidence 99 99999 9999 9999999999987 43222 000221 1123567899999999 88 9999
Q ss_pred EecCCcEEEEecCCCCCccccceeeccc---C---CcceeEEEeccCCCEEEEEeCC---CeEEEEECCCCCeeeeec--
Q 009203 345 GGSDHAVVLWSERDAEDSWKPKALHRNL---H---SSAVMGVAGMQQKQIVLSAGAD---KRIIGFDAGVGRADFKHQ-- 413 (540)
Q Consensus 345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~---~~~v~~l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~-- 413 (540)
++.||.|++||+++++.. ..... | ...|.+++|+|++.+|++++.| |.|++||+++++.+....
T Consensus 203 ~~~dg~i~i~d~~~~~~~-----~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~ 277 (397)
T 1sq9_A 203 GFNNGTVQISELSTLRPL-----YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 277 (397)
T ss_dssp ECTTSEEEEEETTTTEEE-----EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred EeCCCcEEEEECCCCcee-----EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC
Confidence 999999999999987642 22234 7 8899999999999999999999 999999999988876654
Q ss_pred ------------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc---------------
Q 009203 414 ------------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES--------------- 466 (540)
Q Consensus 414 ------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--------------- 466 (540)
+...+.++.|+|++ .+|++++.||.|++||+.+++...... ......+|
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSG---ETLCSAGWDGKLRFWDVKTKERITTLN-MHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTTEEEEEEE-CCGGGCSSGGGCCCBCTTSCBCS
T ss_pred cccccccccccccCCcEEEEEECCCC---CEEEEEeCCCeEEEEEcCCCceeEEEe-cccCcccchhhhhcccccccccc
Confidence 56788999999987 699999999999999999876544322 00000134
Q ss_pred ccCeEEEEEcCCC----------CEEEEEeCCCcEEEEeccC
Q 009203 467 QSALINQSWSPDG----------LYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 467 ~~~v~~~~~sp~g----------~~l~sg~~dg~i~iwd~~~ 498 (540)
...|++++|+|+| ++|++|+.||.|++|++.+
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 8899999999998 7999999999999999986
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=284.14 Aligned_cols=325 Identities=13% Similarity=0.139 Sum_probs=225.3
Q ss_pred eeecCCcceeeEEEEcc-cccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhc---
Q 009203 149 TQASPAAHSIGIVKVKG-EKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVS--- 219 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~--- 219 (540)
..+.+|...|.++++.| .. ..+++++.|+.|++|+.. ..+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~-------------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 85 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEG-------------------------------RYMLSGGSDGVIVLYDLENSSRQSYYTCK 85 (408)
T ss_dssp EECCCCSSCEEEEEECTTTC-------------------------------CEEEEEETTSCEEEEECCCCSSSSCEEEC
T ss_pred eeeeccCCcEEEEEEecCCC-------------------------------CEEEEEcCCCeEEEEECCCCcccceEecc
Confidence 34467999999999998 53 257788889999999765 111
Q ss_pred ----------ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC---
Q 009203 220 ----------SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG--- 286 (540)
Q Consensus 220 ----------~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~--- 286 (540)
.+|.+.|++++|+|+++.+|++|+.||.|++||+.+++....+ .+...+.+++|++.+
T Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 156 (408)
T 4a11_B 86 AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF---------NFEETVYSHHMSPVSTKH 156 (408)
T ss_dssp EEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEECSSCSSC
T ss_pred ccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec---------cCCCceeeeEeecCCCCC
Confidence 3699999999999965889999999999999999987765554 355678999999854
Q ss_pred CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccc-
Q 009203 287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWK- 364 (540)
Q Consensus 287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~- 364 (540)
.+|+++ +.++.|++||+.++ ..+..+.. |.+.|.+++|+| ++. +|++|+.||.|++||++.+.....
T Consensus 157 ~~~~~~----~~~~~v~~~d~~~~---~~~~~~~~---~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 157 CLVAVG----TRGPKVQLCDLKSG---SCSHILQG---HRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp CEEEEE----ESSSSEEEEESSSS---CCCEEECC---CCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred cEEEEE----cCCCeEEEEeCCCc---ceeeeecC---CCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 489999 99999999999976 33555554 567899999999 766 699999999999999987652100
Q ss_pred c----------ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------CccEEEEeecCCC
Q 009203 365 P----------KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------ESKCMSVLPNPCD 427 (540)
Q Consensus 365 ~----------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~ 427 (540)
. .......|...|.+++|+|++++|++++.||.|++||+.+++....... ............
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 304 (408)
T 4a11_B 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS- 304 (408)
T ss_dssp CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSS-
T ss_pred ccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCC-
Confidence 0 0011145889999999999999999999999999999998876443211 111122222222
Q ss_pred CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc
Q 009203 428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 507 (540)
..+++++.++.|++||+.++.... .+.+|...|++++|+|++++|++|+.||.|++||+.+ .+++...
T Consensus 305 ---~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~ 372 (408)
T 4a11_B 305 ---SEFVFVPYGSTIAVYTVYSGEQIT-------MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL--YEPVPDD 372 (408)
T ss_dssp ---SCEEEEEETTEEEEEETTTCCEEE-------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred ---ceEEEEecCCEEEEEECcCCccee-------eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC--CCccCCC
Confidence 356667789999999999877543 4467899999999999999999999999999999997 4555444
Q ss_pred cccccceeEEEEcC-CCCEEEEEEcCCcEEEEeC
Q 009203 508 RAHQKRVFKAVWHY-SHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 508 ~~h~~~i~~l~~s~-~~~~l~s~~~dg~v~iw~l 540 (540)
..+. ....+.+ +...+.+++.|+.+++|+.
T Consensus 373 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 373 DETT---TKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp ----------------------------------
T ss_pred CceE---eccccccccceeecccCccCceeecCC
Confidence 3322 2223333 3345667788999999973
No 85
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.4e-34 Score=279.93 Aligned_cols=298 Identities=15% Similarity=0.131 Sum_probs=233.0
Q ss_pred cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhcccccC
Q 009203 152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSSLHKR 224 (540)
Q Consensus 152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~~h~~ 224 (540)
..|...|.++.+.|... .+++++.|+.|++|+.. ..+.+|.+
T Consensus 5 ~~~~~~i~~~~~s~~~~-------------------------------~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~ 53 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRT-------------------------------QIAICPNNHEVHIYEKSGNKWVQVHELKEHNG 53 (372)
T ss_dssp ESCSSCCCEEEECTTSS-------------------------------EEEEECSSSEEEEEEEETTEEEEEEEEECCSS
T ss_pred cccCCCeEEEEECCCCC-------------------------------EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC
Confidence 35778888888888742 46777889999999654 34779999
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV 304 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v 304 (540)
.|++++|+|+ +.+|++|+.||.|++||+.+++....... .+|...|.+++|+|++++|+++ +.|+.|++
T Consensus 54 ~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~----~~d~~v~i 122 (372)
T 1k8k_C 54 QVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVI------LRINRAARCVRWAPNEKKFAVG----SGSRVISI 122 (372)
T ss_dssp CEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEEC------CCCSSCEEEEEECTTSSEEEEE----ETTSSEEE
T ss_pred cccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEe------ecCCCceeEEEECCCCCEEEEE----eCCCEEEE
Confidence 9999999995 99999999999999999987653333221 4688899999999999999999 99999999
Q ss_pred EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCc-------------cccceeecc
Q 009203 305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDS-------------WKPKALHRN 371 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~ 371 (540)
||+..+........+.. .|...|.+++|+| ++.+|++++.||.|++||++..... .........
T Consensus 123 ~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 123 CYFEQENDWWVCKHIKK--PIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp EEEETTTTEEEEEEECT--TCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred EEecCCCcceeeeeeec--ccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 99997743333333322 3577899999999 9999999999999999997522100 001122224
Q ss_pred cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC-
Q 009203 372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL- 449 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~- 449 (540)
.|...|.+++|+|++++|++++.||.|++||+++++.+..... ...+.++.|+|++ .++++| .|+.|++||+.+
T Consensus 200 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~d~~i~i~~~~~~ 275 (372)
T 1k8k_C 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES---SLVAAG-HDCFPVLFTYDSA 275 (372)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT---EEEEEE-TTSSCEEEEEETT
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCC---CEEEEE-eCCeEEEEEccCc
Confidence 6889999999999999999999999999999999988766544 4578899999987 677777 899999999987
Q ss_pred -Ccc-eeeee-----------------------c-c-------ccccCccccCeEEEEEc-CCC---CEEEEEeCCCcEE
Q 009203 450 -RQT-EIHAF-----------------------G-W-------KQESSESQSALINQSWS-PDG---LYITSGSADPVIH 492 (540)
Q Consensus 450 -~~~-~~~~~-----------------------~-~-------~~~~~~~~~~v~~~~~s-p~g---~~l~sg~~dg~i~ 492 (540)
+.- ....+ + . .....+|...|++++|+ ++| .+|++|+.||.|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~ 355 (372)
T 1k8k_C 276 AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 355 (372)
T ss_dssp TTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred CceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceE
Confidence 320 00000 0 0 11224899999999966 677 9999999999999
Q ss_pred EEeccC
Q 009203 493 LFDIRY 498 (540)
Q Consensus 493 iwd~~~ 498 (540)
+|++.+
T Consensus 356 ~W~~~~ 361 (372)
T 1k8k_C 356 IWDVRS 361 (372)
T ss_dssp EEEHHH
T ss_pred EEEecC
Confidence 999986
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-35 Score=285.82 Aligned_cols=256 Identities=15% Similarity=0.206 Sum_probs=201.1
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC--CCcceeecccccCCCCCCCCceeEEEecC--CCeEEEE
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR--GSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSA 292 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~--~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~ 292 (540)
.++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+... .....+ .+|...|++++|+++ +.+|+++
T Consensus 5 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTL--------TGHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEE--------CCCSSCEEEEEECCGGGCSEEEEE
T ss_pred EEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEe--------cCCCCcEEEEEeCCCCCCCEEEEe
Confidence 457899999999999996 899999999999999999743 222233 589999999999987 8999999
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
+.|+.|++||+.++.. ..+..+.. |...|.+++|+| + +.+|++++.|+.|++||+..+.. ......
T Consensus 76 ----~~dg~v~iwd~~~~~~-~~~~~~~~---~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~ 143 (379)
T 3jrp_A 76 ----SYDGKVLIWKEENGRW-SQIAVHAV---HSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGT---TSPIII 143 (379)
T ss_dssp ----ETTSCEEEEEEETTEE-EEEEEECC---CSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSC---CCEEEE
T ss_pred ----ccCCEEEEEEcCCCce-eEeeeecC---CCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCc---eeeEEe
Confidence 9999999999997621 23444443 677899999999 7 89999999999999999998754 233334
Q ss_pred ccCCcceeEEEeccC-------------CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc
Q 009203 371 NLHSSAVMGVAGMQQ-------------KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
..|...|.+++|+|. +.+|++++.||.|++||+++
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------------- 191 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-------------------------------- 191 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET--------------------------------
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC--------------------------------
Confidence 568999999999994 55555555555555555543
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC---CCEEEEEeCCCcEEEEeccCCCCc---ccccccccc
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD---GLYITSGSADPVIHLFDIRYSANK---PSQSIRAHQ 511 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~h~ 511 (540)
....... ...+.+|...|++++|+|+ +.+|++++.||.|++||+...... .+.....|.
T Consensus 192 ------------~~~~~~~---~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 256 (379)
T 3jrp_A 192 ------------DAQTYVL---ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 256 (379)
T ss_dssp ------------TTTEEEE---EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS
T ss_pred ------------CCcceee---EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCC
Confidence 2211111 1134568889999999999 899999999999999999974211 222334588
Q ss_pred cceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 512 KRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..|++++|+|+|++|++++.||.|++|++
T Consensus 257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 257 DVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 89999999999999999999999999985
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=283.08 Aligned_cols=294 Identities=12% Similarity=0.125 Sum_probs=233.1
Q ss_pred ecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCC---CCeEEEeccc------hhccc
Q 009203 151 ASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSAS---PATIHCHTSN------HVSSL 221 (540)
Q Consensus 151 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---d~~i~~~~~~------~~~~~ 221 (540)
..+|...|.++.+.|..+ ..++.++. |++|++|+.. ....+
T Consensus 14 ~~~h~~~v~~~~~~p~~~------------------------------~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~ 63 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSA------------------------------KFVTMGNFARGTGVIQLYEIQHGDLKLLREIE 63 (357)
T ss_dssp EEECSSCEEEEEECTTSS------------------------------EEEEEEC--CCCEEEEEEEECSSSEEEEEEEE
T ss_pred ccCCCCceEEEEEcCCCc------------------------------eEEEecCccCCCcEEEEEeCCCCcccceeeec
Confidence 357999999999998743 13455555 8999999764 12348
Q ss_pred ccCceEEEEEecCC--CcEEEEEeCCceEEEEEcCCCC-CcceeecccccCCCCCCCCceeEEE------ecCCCeEEEE
Q 009203 222 HKRKLRSLSLNPVN--EQLFVTSALDGVIRLWQLQSRG-SGASLLSTTDCLSPKHRRWPEDIAW------HPQGNSLFSA 292 (540)
Q Consensus 222 h~~~V~~l~~spd~--~~~l~tg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~------~~~~~~l~s~ 292 (540)
|.+.|++++|+|++ +.+|++|+.||.|++||+.+++ ....+ .+|...|.+++| +|++++|+++
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~s~~~~~l~~~ 135 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV--------KGHKEIINAIDGIGGLGIGEGAPEIVTG 135 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE--------CCCSSCEEEEEEESGGGCC-CCCEEEEE
T ss_pred ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE--------EecccceEEEeeccccccCCCccEEEEE
Confidence 99999999999963 6999999999999999999877 44444 589999999955 6789999999
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCC-CcccceeEEE----EeCCCCCEEEEEecCCcEEEEecCCCCCccccce
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKP-HVKGIINSII----FLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA 367 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~----~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 367 (540)
+.|+.|++||+.++. ..+..+..+. ++...+.+++ |+| ++.+|++++.||.|++||+++++.
T Consensus 136 ----~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~------ 202 (357)
T 3i2n_A 136 ----SRDGTVKVWDPRQKD--DPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMAL------ 202 (357)
T ss_dssp ----ETTSCEEEECTTSCS--SCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEE------
T ss_pred ----eCCCeEEEEeCCCCC--CcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCce------
Confidence 999999999999763 2344444322 2244789998 677 999999999999999999998763
Q ss_pred eecccCCcceeEEEecc---CCCEEEEEeCCCeEEEEECCCCCeeeee------ccCccEEEEeecCCCCCce-EEEEEc
Q 009203 368 LHRNLHSSAVMGVAGMQ---QKQIVLSAGADKRIIGFDAGVGRADFKH------QIESKCMSVLPNPCDFNLF-MVQTGT 437 (540)
Q Consensus 368 ~~~~~~~~~v~~l~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~l~~~~ 437 (540)
.....|...|.+++|+| ++.+|++++.||.|++||+++++..... .+...+.++.|+|++ . ++++++
T Consensus 203 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~ 279 (357)
T 3i2n_A 203 RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN---RELFLTAG 279 (357)
T ss_dssp EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE---EEEEEEEE
T ss_pred eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC---CcEEEEEe
Confidence 22244889999999999 9999999999999999999876654332 466788999999986 5 899999
Q ss_pred CCCeEEEEECCCCcceee------------eeccccccCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeccC
Q 009203 438 PGRQLRLYDIRLRQTEIH------------AFGWKQESSESQSALINQSWSPDGLYIT-SGSADPVIHLFDIRY 498 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~ 498 (540)
.||.|++||++....... .+.....+.+|...|++++|+|+|++|+ +++.||.|+|||+.+
T Consensus 280 ~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 999999999986543210 0011224567899999999999999998 899999999999986
No 88
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-34 Score=279.79 Aligned_cols=302 Identities=18% Similarity=0.170 Sum_probs=218.5
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEee
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHT 294 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~ 294 (540)
.++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+.++.....+.... .+|...|.+++|+| ++.+|+++
T Consensus 5 ~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~d~~~l~s~-- 77 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSW----RAHDSSIVAIDWASPEYGRIIASA-- 77 (351)
T ss_dssp CEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEE----ECCSSCEEEEEECCGGGCSEEEEE--
T ss_pred ccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceeccee----ccCCCcEEEEEEcCCCCCCEEEEE--
Confidence 456899999999999995 9999999999999999998765433333222 47999999999999 69999999
Q ss_pred cCCCCCeEEEEecCCCCCc------eeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccc
Q 009203 295 ADSGDSQISVLNLNKTKGR------ACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPK 366 (540)
Q Consensus 295 ~~~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 366 (540)
+.|+.|++||+.++... ..+..+.. |.+.|.+++|+| + +.+|++++.||.|++||+++++......
T Consensus 78 --~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 78 --SYDKTVKLWEEDPDQEECSGRRWNKLCTLND---SKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp --ETTSCEEEEEECTTSCTTSSCSEEEEEEECC---CSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred --cCCCeEEEEecCCCcccccccCcceeeeecc---cCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 99999999999876321 33445543 678899999999 7 9999999999999999999887533222
Q ss_pred e--------eecccCCcceeEEEeccC---CCEEEEEeCCCeEEEEECCCCCe--eee-eccCccEEEEeecCCCCC-ce
Q 009203 367 A--------LHRNLHSSAVMGVAGMQQ---KQIVLSAGADKRIIGFDAGVGRA--DFK-HQIESKCMSVLPNPCDFN-LF 431 (540)
Q Consensus 367 ~--------~~~~~~~~~v~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~-~~~~~~~~~~~~~~~~~~-~~ 431 (540)
. +....|...+.+++|+|+ +.++++++.++.+.+|+...+.. +.. ..+...+.++.|+|++.. ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 1 111357889999999997 99999999999998888887765 222 234678899999998521 14
Q ss_pred EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe----CCCcEEEEeccCCCCcccccc
Q 009203 432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS----ADPVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~----~dg~i~iwd~~~~~~~~~~~~ 507 (540)
+|++|+.||.|++||++........ ..+...+....+++....++.+. ....+.+|+... ...+..+
T Consensus 232 ~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 302 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEKLSPLAS-------EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ--VELLSEH 302 (351)
T ss_dssp EEEEEETTSCEEEEEEEECC----------------------------------------------CCSEE--EEEEEEE
T ss_pred EEEEEcCCCeEEEEeCCCCcCcccc-------CCcccceeccCCCcccccccccccccccceeeeeccccc--ccEEEEE
Confidence 8999999999999999876543321 12222333444444444444443 344555666554 5677888
Q ss_pred cccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 508 RAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 508 ~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+|...|++++|+|++++|++++.||.|+||++
T Consensus 303 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred ecccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 899999999999999999999999999999985
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-34 Score=281.57 Aligned_cols=296 Identities=15% Similarity=0.164 Sum_probs=226.7
Q ss_pred ecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcc-----
Q 009203 151 ASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSS----- 220 (540)
Q Consensus 151 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~----- 220 (540)
..+|...|.++++.|..+ +.. ..+..+..++.|++|+.. ..+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~-----~~~----------------------~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~ 66 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSK-----EGD----------------------PLVFATVGSNRVTLYECHSQGEIRLLQSYVDA 66 (366)
T ss_dssp ECTTCSCEEEEEECTTCC-----TTS----------------------CEEEEEEETTEEEEEEECGGGCEEEEEEEECS
T ss_pred ecCCCCceEEEEEecccC-----CCC----------------------ceEEEECCCCEEEEEEcCCCcEEEeeeecccc
Confidence 348999999999998411 000 112233334589999654 1233
Q ss_pred cccCceEEEEEecCC---CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecC
Q 009203 221 LHKRKLRSLSLNPVN---EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTAD 296 (540)
Q Consensus 221 ~h~~~V~~l~~spd~---~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~ 296 (540)
.|...|++++|+|+. +.+|++|+.||.|++||+.+++....+ .+|...|.+++|+| ++.+|+++
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~l~s~---- 134 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY--------VGHGNAINELKFHPRDPNLLLSV---- 134 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE--------ESCCSCEEEEEECSSCTTEEEEE----
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee--------cCCCCcEEEEEECCCCCCEEEEE----
Confidence 366889999999952 569999999999999999988766655 47889999999999 89999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc----------
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK---------- 366 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------- 366 (540)
+.|+.|++||+.++ ..+..+.....|...|.+++|+| ++.+|++++.||.|++||+++++......
T Consensus 135 ~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 135 SKDHALRLWNIQTD---TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 210 (366)
T ss_dssp ETTSCEEEEETTTT---EEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred eCCCeEEEEEeecC---eEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence 99999999999976 55666533334778899999999 99999999999999999999865321111
Q ss_pred -------------eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--------------eee-eccCccE
Q 009203 367 -------------ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--------------DFK-HQIESKC 418 (540)
Q Consensus 367 -------------~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~-~~~~~~~ 418 (540)
......|...|.+++|+ +++|++++.||.|++||++++.. +.. ......+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 288 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI 288 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS
T ss_pred cccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE
Confidence 01112388999999998 78999999999999999987654 222 1223455
Q ss_pred EEEeecCC--CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc--ccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009203 419 MSVLPNPC--DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES--QSALINQSWSPDGLYITSGSADPVIHLF 494 (540)
Q Consensus 419 ~~~~~~~~--~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~sg~~dg~i~iw 494 (540)
.++.|+|+ + .+|++|+.||.|++||+.+++...... ..+.+| ...|++++|+|++++|++++.||.|++|
T Consensus 289 ~~~~~s~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 289 WYMRFSMDFWQ---KMLALGNQVGKLYVWDLEVEDPHKAKC---TTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp SCCCCEECTTS---SEEEEECTTSCEEEEECCSSSGGGCEE---EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEEcCCCCC---cEEEEEecCCcEEEEECCCCCCccccc---eEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 66777776 5 699999999999999999876432111 133445 7899999999999999999999999999
Q ss_pred ecc
Q 009203 495 DIR 497 (540)
Q Consensus 495 d~~ 497 (540)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 986
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.8e-35 Score=288.17 Aligned_cols=289 Identities=17% Similarity=0.230 Sum_probs=226.2
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecCCCCCeEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~~d~~i~ 303 (540)
....++++|+...++++|+.||.|+||++........... ...+|...|++++|+| ++.+|+++ +.||.|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~----~~~~h~~~V~~~~~~p~~~~~l~s~----s~dg~v~ 107 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP----LVCGHTAPVLDIAWCPHNDNVIASG----SEDCTVM 107 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCC----CBCCCSSCEEEEEECTTCTTEEEEE----ETTSEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCc----eEecCCCCEEEEEeCCCCCCEEEEE----eCCCeEE
Confidence 3456889996444556689999999999976432211111 1158999999999999 89999999 9999999
Q ss_pred EEecCCCCCc----eeEEeecCCCCcccceeEEEEeCCCC-CEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 304 VLNLNKTKGR----ACVTFLDDKPHVKGIINSIIFLPWEN-PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 304 vwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
+||+.++... ..+..+.+ |...|.+++|+| ++ .+|++|+.||.|++||+.+++. ...+....|...|.
T Consensus 108 vw~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 108 VWEIPDGGLVLPLREPVITLEG---HTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAA---VLTLGPDVHPDTIY 180 (402)
T ss_dssp EEECCTTCCSSCBCSCSEEEEC---CSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEE---EEEECTTTCCSCEE
T ss_pred EEEccCCCCccccCCceEEecC---CCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCc---cEEEecCCCCCceE
Confidence 9999876321 23444544 678899999999 76 7999999999999999998874 22221146899999
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-c-cCc-cEEEEeecCCCCCceEEEEE---cCCCeEEEEECCCCcc
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-Q-IES-KCMSVLPNPCDFNLFMVQTG---TPGRQLRLYDIRLRQT 452 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~l~~~---~~dg~v~i~d~~~~~~ 452 (540)
+++|+|++.+|++++.||.|++||+++++.+... . +.. .+..+.|+|++ .++++| +.|+.|++||+++...
T Consensus 181 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG---KILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT---EEEEEEECTTCCEEEEEEETTBCSS
T ss_pred EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC---cEEEEeccCCCCceEEEEcCccccC
Confidence 9999999999999999999999999998887665 2 222 37889999987 788888 7999999999998765
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeccCCCCcc-cccccc--cccceeEEEEcCCCCEEEE
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYIT-SGSADPVIHLFDIRYSANKP-SQSIRA--HQKRVFKAVWHYSHPLLIS 528 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~~~~~~-~~~~~~--h~~~i~~l~~s~~~~~l~s 528 (540)
..... ...|...+.+++|+|++++|+ +|+.||.|++||+.+ +.+ +..+.. |...|.+++|+|++.++++
T Consensus 258 ~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~--~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 258 PLSLQ-----ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS--EAPFLHYLSMFSSKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp CSEEE-----ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS--STTCEEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred CceEE-----eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC--CCcceEeecccccCCcccceEEeccccccee
Confidence 33322 124667899999999999986 555799999999997 342 444544 4589999999999998875
Q ss_pred EEcCCcEEEEeC
Q 009203 529 ISSDLNIGLHKI 540 (540)
Q Consensus 529 ~~~dg~v~iw~l 540 (540)
.|+.+++|++
T Consensus 331 --~~~~~~~~~l 340 (402)
T 2aq5_A 331 --KCEIARFYKL 340 (402)
T ss_dssp --GTEEEEEEEE
T ss_pred --cceeEEEEEc
Confidence 5779999985
No 91
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-34 Score=283.50 Aligned_cols=277 Identities=15% Similarity=0.114 Sum_probs=203.0
Q ss_pred eEEecCCCCeEEEeccc-------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC---CcceeecccccC
Q 009203 200 LVRTSASPATIHCHTSN-------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG---SGASLLSTTDCL 269 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~---~~~~~~~~~~~~ 269 (540)
.+++++.|+.|++|+.. ..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++. ....+
T Consensus 25 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~------- 96 (377)
T 3dwl_C 25 EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL------- 96 (377)
T ss_dssp EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------CCCCEEEC-------
T ss_pred EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-------
Confidence 57788889999999654 357899999999999996 8999999999999999998876 22222
Q ss_pred CCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203 270 SPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH 349 (540)
Q Consensus 270 ~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 349 (540)
.+|...|.+++|+|++++|+++ +.|+.|++||+.++........+.. .|...|.+++|+| ++.+|++|+.|+
T Consensus 97 -~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~~~~~d~ 168 (377)
T 3dwl_C 97 -LRLNRAATFVRWSPNEDKFAVG----SGARVISVCYFEQENDWWVSKHLKR--PLRSTILSLDWHP-NNVLLAAGCADR 168 (377)
T ss_dssp -CCCSSCEEEEECCTTSSCCEEE----ESSSCEEECCC-----CCCCEEECS--SCCSCEEEEEECT-TSSEEEEEESSS
T ss_pred -cccCCceEEEEECCCCCEEEEE----ecCCeEEEEEECCcccceeeeEeec--ccCCCeEEEEEcC-CCCEEEEEeCCC
Confidence 4789999999999999999999 9999999999997643223444443 2678899999999 999999999999
Q ss_pred cEEEEecCCCCCccc------------cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe----eee-e
Q 009203 350 AVVLWSERDAEDSWK------------PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA----DFK-H 412 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~-~ 412 (540)
.|++||+........ ...+....|...|.+++|+|++++|++++.||.|++||+++++. +.. .
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 248 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK 248 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec
Confidence 999999964331100 01111126899999999999999999999999999999999876 443 3
Q ss_pred ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc-ceeeeec---------------------------------
Q 009203 413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ-TEIHAFG--------------------------------- 458 (540)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~--------------------------------- 458 (540)
.+...+.++.|+|++ .+|++|+.++.+ +|+..... .....+.
T Consensus 249 ~~~~~v~~~~~s~~~---~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (377)
T 3dwl_C 249 LSQLPLRSLLWANES---AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF 324 (377)
T ss_dssp CSSSCEEEEEEEETT---EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred CCCCceEEEEEcCCC---CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence 345678899999987 788888766666 66665221 0000000
Q ss_pred -----------cccccCccccCeEEEEEcCCC-C---EEEEEeCCCcEEEEec
Q 009203 459 -----------WKQESSESQSALINQSWSPDG-L---YITSGSADPVIHLFDI 496 (540)
Q Consensus 459 -----------~~~~~~~~~~~v~~~~~sp~g-~---~l~sg~~dg~i~iwd~ 496 (540)
.......|...|+++++.+.. . .|++|+.||.|+|||+
T Consensus 325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000112399999999976543 3 6999999999999985
No 92
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.3e-33 Score=280.03 Aligned_cols=272 Identities=18% Similarity=0.233 Sum_probs=228.5
Q ss_pred hcccccCce-EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 218 VSSLHKRKL-RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V-~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
++.+|.+.| +|+.+ + +.+|++|+.||+|++||+.+++....+ .+|...|.+++|+ +++|+++
T Consensus 113 ~l~~h~~~v~~~~~~--~-g~~l~sg~~dg~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~--~~~l~s~---- 175 (445)
T 2ovr_B 113 VLKGHDDHVITCLQF--C-GNRIVSGSDDNTLKVWSAVTGKCLRTL--------VGHTGGVWSSQMR--DNIIISG---- 175 (445)
T ss_dssp EEECSTTSCEEEEEE--E-TTEEEEEETTSCEEEEETTTCCEEEEC--------CCCSSCEEEEEEE--TTEEEEE----
T ss_pred EecccCCCcEEEEEE--c-CCEEEEEECCCcEEEEECCCCcEEEEE--------cCCCCCEEEEEec--CCEEEEE----
Confidence 357898875 55544 3 779999999999999999988766655 5899999999998 5699999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+.||.|++||+.++ ..+..+.+ |...|.++.|++ ..+++|+.||.|++||+.+++. ...+ .+|...
T Consensus 176 ~~dg~i~vwd~~~~---~~~~~~~~---h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~---~~~~--~~~~~~ 241 (445)
T 2ovr_B 176 STDRTLKVWNAETG---ECIHTLYG---HTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQC---LHVL--MGHVAA 241 (445)
T ss_dssp ETTSCEEEEETTTT---EEEEEECC---CSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCE---EEEE--ECCSSC
T ss_pred eCCCeEEEEECCcC---cEEEEECC---CCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcE---EEEE--cCCccc
Confidence 99999999999986 55666664 677899999964 6899999999999999998874 2222 468999
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
|.+++| ++.++++++.||.|++||+++++.+.... +...+.++.++. .++++++.|+.|++||+++++...
T Consensus 242 v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~- 313 (445)
T 2ovr_B 242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG-----IHVVSGSLDTSIRVWDVETGNCIH- 313 (445)
T ss_dssp EEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECS-----SEEEEEETTSCEEEEETTTCCEEE-
T ss_pred EEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECC-----CEEEEEeCCCeEEEEECCCCCEEE-
Confidence 999999 68999999999999999999988876654 456778888833 589999999999999999877543
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc---cccceeEEEEcCCCCEEEEEEcC
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA---HQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
.+.+|...+.++.+ ++++|++|+.||.|++||+.+ ++.+..+.. |...|++++|+ +++|++|+.|
T Consensus 314 ------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d 381 (445)
T 2ovr_B 314 ------TLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKT--GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD 381 (445)
T ss_dssp ------EECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTT--CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT
T ss_pred ------EEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCC--CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC
Confidence 34578888988887 567999999999999999987 677777765 88899999995 6899999999
Q ss_pred CcEEEEeC
Q 009203 533 LNIGLHKI 540 (540)
Q Consensus 533 g~v~iw~l 540 (540)
|.|++||+
T Consensus 382 g~v~iwd~ 389 (445)
T 2ovr_B 382 GTVKLWDL 389 (445)
T ss_dssp SEEEEEET
T ss_pred CeEEEEEC
Confidence 99999985
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.8e-34 Score=277.51 Aligned_cols=254 Identities=10% Similarity=0.085 Sum_probs=196.5
Q ss_pred cccccCceEEEEEecCCCcEEEEE-----------eCCceEEEEEcCCCCCcceeecccc-cCCCCCCCCceeEEEecCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTS-----------ALDGVIRLWQLQSRGSGASLLSTTD-CLSPKHRRWPEDIAWHPQG 286 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg-----------~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~h~~~V~~~~~~~~~ 286 (540)
+.+|.+.|.++++++ ..+++| +.|+.+++|++.............. .....+...+.+++|+|||
T Consensus 69 l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 69 LEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp CCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred ccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 678999999998864 356655 4578899999877654333322211 1113566779999999999
Q ss_pred CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203 287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK 366 (540)
Q Consensus 287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 366 (540)
++|++++ ++.|++|+|||+.++ .++..+. |.+.|.+++|+| ++.+|++++.+ .+.+|+..++.. ..
T Consensus 146 ~~la~as--~~~d~~i~iwd~~~~---~~~~~~~----~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~---~~ 211 (365)
T 4h5i_A 146 TVAAIAS--SKVPAIMRIIDPSDL---TEKFEIE----TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSC---IA 211 (365)
T ss_dssp SCEEEEE--SCSSCEEEEEETTTT---EEEEEEE----CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCE---EE
T ss_pred CEEEEEE--CCCCCEEEEeECCCC---cEEEEeC----CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcc---ee
Confidence 9987652 157999999999986 4455554 356799999999 99999999865 566777766653 22
Q ss_pred eeecccCCcceeEEEeccCCCEEEEEeCCC----eEEEEECCCCCeee-----eeccCccEEEEeecCCCCCceEEEEEc
Q 009203 367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADK----RIIGFDAGVGRADF-----KHQIESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
......|...|.+++|+|++.++++++.|+ .+++||+....... .......+.+++|+|++ .+|++|+
T Consensus 212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg---~~lasgs 288 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG---ELAVLAS 288 (365)
T ss_dssp EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS---CEEEEEE
T ss_pred eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC---CceEEEc
Confidence 233356889999999999999999999887 68899987665421 23445678999999988 7999999
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.|++|+|||+.+++.... .+.+|...|++++|||||++||+|+.|++|+||++..
T Consensus 289 ~D~~V~iwd~~~~~~~~~------~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 289 NDNSIALVKLKDLSMSKI------FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTSCEEEEETTTTEEEEE------ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCEEEEEECCCCcEEEE------ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999998875443 2468999999999999999999999999999999974
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-35 Score=296.80 Aligned_cols=261 Identities=15% Similarity=0.119 Sum_probs=193.4
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC------CCeEEEEeecCCCCCeEEEEecCC
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ------GNSLFSAHTADSGDSQISVLNLNK 309 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~------~~~l~s~~~~~~~d~~i~vwd~~~ 309 (540)
+.+|++|+.|++|+||++.+++......... .+|.+.|.+++|+|+ +.+||++ +.||+|++||+.+
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l----~~~~~~V~~v~wsp~~~~~~~~~~LAs~----s~DgtvrlWd~~~ 244 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI----VHSFGEVWDLKWHEGCHAPHLVGCLSFV----SQEGTINFLEIID 244 (524)
T ss_dssp ---------CEEEEEEEEETTTCCEEEEEEE----EECCCSEEEEEECSSCCCSSSSCEEEEE----ETTSCEEEEECCC
T ss_pred hhhhccCCCCceEEEEEccCCCCCceEEEEE----EecCCcEEEEEECCCCCCCCCCceEEEE----ecCCeEEEEEcCC
Confidence 3445557789999999998766432211111 356788999999997 5799999 9999999999986
Q ss_pred CCCc--------eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE-
Q 009203 310 TKGR--------ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV- 380 (540)
Q Consensus 310 ~~~~--------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l- 380 (540)
+... .....+.+ |...|.+++|++ + ..|++|+.||+|++||++++.. ......+|...|+++
T Consensus 245 ~~~~~~~~~~~~~p~~~l~~---h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~----~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 245 NATDVHVFKMCEKPSLTLSL---ADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEV----PSFYDQVHDSYILSVS 315 (524)
T ss_dssp CSSSSSEEECCCSCSEEECC---TTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSS----CSEEEECSSSCEEEEE
T ss_pred CccccccceeecCceEEEEc---CCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCC----ceEEeecccccEEEEE
Confidence 5321 11123333 568899999998 5 4899999999999999997643 222235699999999
Q ss_pred -EeccCC-CEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 381 -AGMQQK-QIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 381 -~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
+|+|+| .+|++++.|++|++||++++++.... .....+.+++|+|++ ..+++++.|++|++||++++.+..
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~---~~l~s~~~d~tv~lwd~~~~~~~~- 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI---YSYIYSDGASSLRAVPSRAAFAVH- 391 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT---TEEEEECSSSEEEEEETTCTTCCE-
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc---CeEEEeCCCCcEEEEECcccccce-
Confidence 578888 89999999999999999987764432 222346788999976 579999999999999999876533
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-----cccceeEEEEcCCCCEE
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-----HQKRVFKAVWHYSHPLL 526 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----h~~~i~~l~~s~~~~~l 526 (540)
.+.+|.+.|++++|+|+|++|++|+.||+|++||+.. ..+..+.. +...|++++|+|+|..+
T Consensus 392 ------~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~---~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 392 ------PLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR---RLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp ------EEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS---STTTCC------CCCCEEEECBCCSSSCEE
T ss_pred ------eeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH---hhccccccCccceeeeEEEEeccCCCCCeE
Confidence 3457999999999999999999999999999999874 33333321 12257899999999855
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=262.11 Aligned_cols=281 Identities=16% Similarity=0.158 Sum_probs=229.4
Q ss_pred CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccc
Q 009203 147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSL 221 (540)
Q Consensus 147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~ 221 (540)
....+.+|...|.++.+ +.. ..+++++.|+.|++|+.. ..+.+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~-------------------------------~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 57 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDD-------------------------------SKVASVSRDGTVRLWSKDDQWLGTVVYT 57 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EET-------------------------------TEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred HHHHhhCCCCCcEEEEe-cCC-------------------------------CEEEEEEcCCcEEEEECCCCEEEEEeec
Confidence 45667899999999988 542 247788899999999764 45789
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
|.+.|++++|+|+ +.+|++|+.||.|++|++............ .+|...|.+++| ++++|+++ +.|+.
T Consensus 58 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~--~~~~l~~~----~~d~~ 125 (313)
T 3odt_A 58 GQGFLNSVCYDSE-KELLLFGGKDTMINGVPLFATSGEDPLYTL-----IGHQGNVCSLSF--QDGVVISG----SWDKT 125 (313)
T ss_dssp CSSCEEEEEEETT-TTEEEEEETTSCEEEEETTCCTTSCC-CEE-----CCCSSCEEEEEE--ETTEEEEE----ETTSE
T ss_pred CCccEEEEEECCC-CCEEEEecCCCeEEEEEeeecCCCCcccch-----hhcccCEEEEEe--cCCEEEEE----eCCCC
Confidence 9999999999995 999999999999999999775422211111 578999999999 57799999 99999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
|++||. + .....+.. |...+.+++|.|.++.++++++.||.|++||.... .......|...+.+++
T Consensus 126 i~~~d~--~---~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~i~~~~ 191 (313)
T 3odt_A 126 AKVWKE--G---SLVYNLQA---HNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV------IKTFSGIHNDVVRHLA 191 (313)
T ss_dssp EEEEET--T---EEEEEEEC---CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE------EEEECSSCSSCEEEEE
T ss_pred EEEEcC--C---cEEEeccc---CCCceeEEEEccCCCCEEEEEECCCCEEEEecCce------EEEEeccCcccEEEEE
Confidence 999992 2 44555554 56789999998878999999999999999994332 1222233889999999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
|+|++. +++++.||.|++||+++++.+.... +...+.++.|+|++ .+++++.||.|++||+.+++...
T Consensus 192 ~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~----~l~~~~~dg~v~iwd~~~~~~~~------ 260 (313)
T 3odt_A 192 VVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG----DIVSCGEDRTVRIWSKENGSLKQ------ 260 (313)
T ss_dssp EEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS----CEEEEETTSEEEEECTTTCCEEE------
T ss_pred EcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC----CEEEEecCCEEEEEECCCCceeE------
Confidence 999988 8999999999999999998877654 56788999999987 48899999999999999887543
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.+..|...|.+++|+|+++ +++++.||.|++||+.+
T Consensus 261 -~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 261 -VITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp -EEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred -EEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 3356778999999999998 56788999999999997
No 96
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=283.85 Aligned_cols=314 Identities=7% Similarity=0.036 Sum_probs=241.7
Q ss_pred ceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccceEEecCC--CCeEEEeccc--hhcc-cccCceEE
Q 009203 156 HSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSAS--PATIHCHTSN--HVSS-LHKRKLRS 228 (540)
Q Consensus 156 ~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--d~~i~~~~~~--~~~~-~h~~~V~~ 228 (540)
..|.++++.|.....+ ++|.++.+ ..... .+.+|...|..+++.++ ++++.+|++. .++. +|...|++
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~d---~~~~~--~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~ 90 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIGQ---PKYAK--DINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV 90 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEEE---ECCCS--CCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCceeec---ccccc--eecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence 4677889999987776 77777772 11122 22699999999999875 3444455544 3444 77899999
Q ss_pred EEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC-----CCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 229 LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR-----RWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 229 l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
++|||| |.+||+++.||.|+|||... +...+ . |. ..|.+++|||||++|++| +.||+|+
T Consensus 91 vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l--------~-~~~~~~~~sv~svafSPDG~~LAsg----s~DGtVk 154 (588)
T 2j04_A 91 CKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNL--------D-SKGNLSSRTYHCFEWNPIESSIVVG----NEDGELQ 154 (588)
T ss_dssp EEECSS-SSCEEEEETTSCEEEEETTE--EEEEC--------C-CSSCSTTTCEEEEEECSSSSCEEEE----ETTSEEE
T ss_pred EEECCC-CCEEEEEeCCCcEEEEeCCc--eeeec--------c-CCCccccccEEEEEEcCCCCEEEEE----cCCCEEE
Confidence 999996 99999999999999999543 22222 2 33 359999999999999999 9999999
Q ss_pred EEecCCCCCce----eEEeecC-CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203 304 VLNLNKTKGRA----CVTFLDD-KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 304 vwd~~~~~~~~----~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
+||+.++.... .+..+.. ...|.+.|.+++|+| ++ +++++.|++|++||+.++........+. .+|...|.
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~ 230 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKIT 230 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEE
Confidence 99999763211 2444421 123678999999999 88 8888999999999998876311011221 35889999
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCe-eeeeccCccEEEEee--cCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DFKHQIESKCMSVLP--NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
+++|+ |+.|++++ ++.|++||+.+++. .....+...+..+.+ +|++ ..+++++.+|+ ++|...
T Consensus 231 svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~---~~La~a~edG~-klw~~d------- 296 (588)
T 2j04_A 231 DLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES---TILLMSNKTSY-KVLLED------- 296 (588)
T ss_dssp CEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC---EEEEECSSCEE-EEEESS-------
T ss_pred EEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC---CEEEEEcCCCC-EEEeec-------
Confidence 99999 68888887 69999999998887 445567788888999 7776 79999999999 999876
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
.++|+||+..+++. |+++++|+... ..+..+.+ ...|++++|+|||+.+|+++
T Consensus 297 ----------------~~~~spd~~l~a~~--d~~v~lW~~~g---~~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 ----------------ELHVTADNIIAPYL--EKKFKKWSTIW---NEFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ----------------SEEEECCCSSHHHH--HHHHHHTTTTT---TSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ----------------cEEECCCceEEEEc--CCEEEEEECCC---Cceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 15699999888875 99999999873 44556655 77899999999999999886
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=261.57 Aligned_cols=267 Identities=18% Similarity=0.230 Sum_probs=216.2
Q ss_pred EEecCCCCeEEEeccc-----hh--cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HV--SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~--~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
++.+ .|++|++|+.. ++ +.+|...|++|+|+|+ +++|++|+.||+|+||++.+++.+..+ .+|
T Consensus 39 lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~--------~~h 108 (318)
T 4ggc_A 39 LAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNM--------TSH 108 (318)
T ss_dssp EEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECC
T ss_pred EEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEEEe--------cCc
Confidence 4443 48999999764 23 3578889999999995 999999999999999999998876665 477
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
...+.++. +++..|+++ +.++.+.+|+.... ...+..+.+ |...+..+.|.+ ++.+|++++.|+.|++
T Consensus 109 ~~~~~~~~--~~~~~l~s~----~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~-~~~~l~s~~~d~~i~i 176 (318)
T 4ggc_A 109 SARVGSLS--WNSYILSSG----SRSGHIHHHDVRVA--EHHVATLSG---HSQEVCGLRWAP-DGRHLASGGNDNLVNV 176 (318)
T ss_dssp SSCEEEEE--EETTEEEEE----ETTSEEEEEETTSS--SCEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred cceEEEee--cCCCEEEEE----ecCCceEeeecCCC--ceeEEEEcC---ccCceEEEEEcC-CCCEEEEEecCcceeE
Confidence 77776554 456799999 99999999999876 344555554 567899999999 9999999999999999
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEE---EEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV---LSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (540)
||+++++...... .....+.+.|.+++++|++..+ ++++.++.|++||...............+..+.+.|.+..
T Consensus 177 wd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~- 254 (318)
T 4ggc_A 177 WPSAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE- 254 (318)
T ss_dssp EESSCBTTBSCCS-EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTE-
T ss_pred EECCCCcccccce-eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccc-
Confidence 9999876432222 2234578899999999876543 3566789999999999888888888888889999987732
Q ss_pred eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.++++|+.|+.|++||+.+++... .+.+|...|++++|+|+|++|++|+.||+|+|||+..
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~-------~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVA-------ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEE-------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eEEEEEcCCCEEEEEECCCCcEEE-------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 233445689999999999887543 4578999999999999999999999999999999975
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=280.33 Aligned_cols=301 Identities=11% Similarity=0.117 Sum_probs=227.7
Q ss_pred CCeeee-cCCcceeeEEEEcc-cccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccch------
Q 009203 146 GSSTQA-SPAAHSIGIVKVKG-EKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNH------ 217 (540)
Q Consensus 146 ~~~~~~-~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~~------ 217 (540)
..+..+ .+|...|.++++.| ... .+++++.|++|++|+...
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~-------------------------------~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETP-------------------------------YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSC-------------------------------EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred eEEeeeccCCCCceEEEEECCCCCC-------------------------------EEEEecCCceEEEeECcccccCcc
Confidence 345566 78999999999998 532 578889999999997642
Q ss_pred ---hcc-cccCceEEEEEecCCCcEEEEEeCCceEEEEEcC---CCCCcceeecc----cccCCCCCCCCceeEE--Eec
Q 009203 218 ---VSS-LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ---SRGSGASLLST----TDCLSPKHRRWPEDIA--WHP 284 (540)
Q Consensus 218 ---~~~-~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~---~~~~~~~~~~~----~~~~~~~h~~~V~~~~--~~~ 284 (540)
.+. +|.+.|++++|+|+ +.+|++|+.||.|++||+. .++........ ......++...+.++. +++
T Consensus 102 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 102 YSSSLTYDCSSTVTQITMIPN-FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp CSCSEEEECSSCEEEEEECTT-SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred cceeeeccCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 222 79999999999995 8999999999999999995 44433222111 0000012567788888 568
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK 364 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 364 (540)
++.+|+++ +.|+.|++||+.++ ..+..+.... |.+.|.+++|+| ++.+|++|+.||.|++||+++++.
T Consensus 181 ~~~~l~~~----~~d~~i~iwd~~~~---~~~~~~~~~~-h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--- 248 (437)
T 3gre_A 181 EKSLLVAL----TNLSRVIIFDIRTL---ERLQIIENSP-RHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVL--- 248 (437)
T ss_dssp SCEEEEEE----ETTSEEEEEETTTC---CEEEEEECCG-GGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEE---
T ss_pred CCCEEEEE----eCCCeEEEEeCCCC---eeeEEEccCC-CCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccE---
Confidence 89999999 99999999999986 4566665422 567899999999 999999999999999999998764
Q ss_pred cceeecccCCcceeEEEec----cCCCEEEEEeCCCeEEEEECCCCCeeeeec---------------------------
Q 009203 365 PKALHRNLHSSAVMGVAGM----QQKQIVLSAGADKRIIGFDAGVGRADFKHQ--------------------------- 413 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~l~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------- 413 (540)
...+ ...|...|.+++|+ +++.+|++++.||.|++||+++++.+....
T Consensus 249 ~~~~-~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 327 (437)
T 3gre_A 249 IRSW-SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR 327 (437)
T ss_dssp EEEE-BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred EEEE-ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence 2222 12577899999554 568899999999999999999887654432
Q ss_pred cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc------------------------------ccc
Q 009203 414 IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK------------------------------QES 463 (540)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------------------------------~~~ 463 (540)
....+.++.|+ ++ .+|++|+.|+.|++||+.+++......++. ...
T Consensus 328 ~~~~v~~l~~~-~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 328 SLNALSTISVS-ND---KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp SGGGGCCEEEE-TT---EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred cCCceEEEEEC-Cc---eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 23346677777 33 699999999999999999877544332210 112
Q ss_pred CccccCeEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 009203 464 SESQSALINQSWSPD--GLYITSGSADPVIHLFD 495 (540)
Q Consensus 464 ~~~~~~v~~~~~sp~--g~~l~sg~~dg~i~iwd 495 (540)
..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 348999999999998 78999999999999995
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.8e-33 Score=277.94 Aligned_cols=279 Identities=15% Similarity=0.194 Sum_probs=217.5
Q ss_pred ccceEEecCCCCeEEEeccc---------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc
Q 009203 197 LIPLVRTSASPATIHCHTSN---------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD 267 (540)
Q Consensus 197 ~v~~~~~~~~d~~i~~~~~~---------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~ 267 (540)
+...+++++.|+.|++|+.. ..+.+|.+.|++++|+|+++.+|++|+.||+|+|||+.++...........
T Consensus 46 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~ 125 (402)
T 2aq5_A 46 FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125 (402)
T ss_dssp EEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSE
T ss_pred eEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceE
Confidence 33456667889999999753 247899999999999994489999999999999999998743211111000
Q ss_pred cCCCCCCCCceeEEEecCC-CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203 268 CLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG 346 (540)
Q Consensus 268 ~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 346 (540)
. ..+|...|.+++|+|++ .+|+++ +.|+.|++||+.++ ..+..+.. ..|.+.|.+++|+| ++.+|++++
T Consensus 126 ~-~~~h~~~v~~~~~~p~~~~~l~s~----~~dg~i~iwd~~~~---~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~ 195 (402)
T 2aq5_A 126 T-LEGHTKRVGIVAWHPTAQNVLLSA----GCDNVILVWDVGTG---AAVLTLGP-DVHPDTIYSVDWSR-DGALICTSC 195 (402)
T ss_dssp E-EECCSSCEEEEEECSSBTTEEEEE----ETTSCEEEEETTTT---EEEEEECT-TTCCSCEEEEEECT-TSSCEEEEE
T ss_pred E-ecCCCCeEEEEEECcCCCCEEEEE----cCCCEEEEEECCCC---CccEEEec-CCCCCceEEEEECC-CCCEEEEEe
Confidence 0 15899999999999998 699999 99999999999976 55555521 13677899999999 999999999
Q ss_pred cCCcEEEEecCCCCCccccceeecccCCcc-eeEEEeccCCCEEEEE---eCCCeEEEEECCCCCe---eeeeccCccEE
Q 009203 347 SDHAVVLWSERDAEDSWKPKALHRNLHSSA-VMGVAGMQQKQIVLSA---GADKRIIGFDAGVGRA---DFKHQIESKCM 419 (540)
Q Consensus 347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~---~~dg~i~iwd~~~~~~---~~~~~~~~~~~ 419 (540)
.||.|++||+++++. ...+ ...|.+. +.++.|+|++.+|++| +.|+.|++||++++.. .........+.
T Consensus 196 ~d~~i~iwd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 271 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTV---VAEK-DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL 271 (402)
T ss_dssp TTSEEEEEETTTTEE---EEEE-ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred cCCcEEEEeCCCCce---eeee-ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence 999999999998774 2222 1346655 8999999999999999 7899999999998665 22334567788
Q ss_pred EEeecCCCCCceEE-EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 420 SVLPNPCDFNLFMV-QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 420 ~~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
++.|+|++ .++ ++|+.||.|++||+.+++.....+. .. .|...|.+++|+|++.++++ .++.+++|++.+
T Consensus 272 ~~~~s~~~---~~l~~~g~~dg~i~i~d~~~~~~~~~~l~---~~-~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 272 LPFFDPDT---NIVYLCGKGDSSIRYFEITSEAPFLHYLS---MF-SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEEETTT---TEEEEEETTCSCEEEEEECSSTTCEEEEE---EE-CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EEEEcCCC---CEEEEEEcCCCeEEEEEecCCCcceEeec---cc-ccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 99999987 455 5677899999999998774232221 11 25688999999999998875 466999999986
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.8e-32 Score=271.64 Aligned_cols=254 Identities=16% Similarity=0.262 Sum_probs=204.7
Q ss_pred CCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCC-------CCceeEEeecCCCCcccceeEEEEeCCCCC-E
Q 009203 271 PKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKT-------KGRACVTFLDDKPHVKGIINSIIFLPWENP-C 341 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~ 341 (540)
.+|.+.|++++|+|+ +.+|+++ +.+|.|++||+.+. ........+.. |...|.+++|+| ++. +
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~----~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~-~~~~~ 196 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATK----TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG---HQKEGYGLSWNP-NLNGY 196 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEE----CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC---CSSCCCCEEECT-TSTTE
T ss_pred EcCCCcEEEEEECCCCCcEEEEE----CCCCcEEEEECCCcccccCccccCCCcEEecC---CCCCeEEEEeCC-CCCCe
Confidence 368899999999997 6789998 99999999999862 01133444443 677899999999 666 9
Q ss_pred EEEEecCCcEEEEecCCCCCcccc--ceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCC---Ceeeee-cc
Q 009203 342 FATGGSDHAVVLWSERDAEDSWKP--KALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVG---RADFKH-QI 414 (540)
Q Consensus 342 l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~ 414 (540)
|++|+.||.|++||+..+...... .......|...|.+++|+| ++.+|++++.||.|++||++++ ..+... .+
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 999999999999999884321111 0122246999999999999 7789999999999999999986 344333 55
Q ss_pred CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEE
Q 009203 415 ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHL 493 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~i 493 (540)
...+.++.|+|.+. .++++|+.||.|++||+++...... .+..|...|++++|+|++. +|++++.||.|+|
T Consensus 277 ~~~v~~i~~~p~~~--~~l~tg~~dg~v~vwd~~~~~~~~~------~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 277 TAEVNCLSFNPYSE--FILATGSADKTVALWDLRNLKLKLH------SFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp SSCEEEEEECSSCT--TEEEEEETTSEEEEEETTCTTSCSE------EEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred CCCeEEEEeCCCCC--CEEEEEeCCCeEEEEeCCCCCCCeE------EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 67889999999774 3799999999999999998554333 3456889999999999985 6999999999999
Q ss_pred EeccCCC------------CcccccccccccceeEEEEcCCCC-EEEEEEcCCcEEEEeC
Q 009203 494 FDIRYSA------------NKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLHKI 540 (540)
Q Consensus 494 wd~~~~~------------~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw~l 540 (540)
||+.... ...+..+.+|...|++++|+|+++ +|++++.||.|+||++
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 9998621 145566778999999999999999 9999999999999985
No 101
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.7e-32 Score=257.60 Aligned_cols=250 Identities=17% Similarity=0.192 Sum_probs=199.9
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhcc
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSS 220 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~ 220 (540)
+..+.+|...|.++++.|... .+++++.|++|++|+.. ..+.
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~-------------------------------~las~s~D~~v~iw~~~~~~~~~~~~l~ 50 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGK-------------------------------RMATCSSDKTIKIFEVEGETHKLIDTLT 50 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSS-------------------------------EEEEEETTSCEEEEEBCSSCBCCCEEEC
T ss_pred ceeccCCcCceEEEEECCCCC-------------------------------EEEEEeCCCEEEEEecCCCCcEEEEEEc
Confidence 345678999999999988642 57889999999999753 3578
Q ss_pred cccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCCCCCCceeEEEecC--CCeEEEEeec
Q 009203 221 LHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTA 295 (540)
Q Consensus 221 ~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~ 295 (540)
+|.+.|++++|+|+ .+.+|++|+.|++|+|||+.++.. ...+ .+|...|.+++|+|+ |.+|+++
T Consensus 51 gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~--------~~h~~~v~~v~~~p~~~g~~l~s~--- 119 (297)
T 2pm7_B 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH--------AVHSASVNSVQWAPHEYGPMLLVA--- 119 (297)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE--------CCCSSCEEEEEECCGGGCSEEEEE---
T ss_pred cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe--------ecCCCceeEEEeCcCCCCcEEEEE---
Confidence 99999999999863 378999999999999999987642 2222 478999999999997 8899999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-------------CCEEEEEecCCcEEEEecCCCCCc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-------------NPCFATGGSDHAVVLWSERDAEDS 362 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------~~~l~s~~~dg~i~iwd~~~~~~~ 362 (540)
+.|+.|++||+.++.... ...+.+ |...|.+++|+| + +.+|++|+.|++|++||++++...
T Consensus 120 -s~d~~v~~wd~~~~~~~~-~~~~~~---h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~ 193 (297)
T 2pm7_B 120 -SSDGKVSVVEFKENGTTS-PIIIDA---HAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193 (297)
T ss_dssp -ETTSEEEEEEBCSSSCBC-CEEEEC---CSSCEEEEEECC-CC------------CCEEEEEETTSCEEEEEEETTTTE
T ss_pred -ECCCcEEEEEecCCCcee-eeeeec---ccCccceEeecC-CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce
Confidence 999999999998653211 233343 567899999999 5 579999999999999999876531
Q ss_pred cccceeecccCCcceeEEEeccCC---CEEEEEeCCCeEEEEECCCCCe---eee---eccCccEEEEeecCCCCCceEE
Q 009203 363 WKPKALHRNLHSSAVMGVAGMQQK---QIVLSAGADKRIIGFDAGVGRA---DFK---HQIESKCMSVLPNPCDFNLFMV 433 (540)
Q Consensus 363 ~~~~~~~~~~~~~~v~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~l 433 (540)
.. ......+|...|.+++|+|++ .+|++++.|++|++||++.+.. ... ......+.++.|+|++ .+|
T Consensus 194 ~~-~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l 269 (297)
T 2pm7_B 194 YV-LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG---NVL 269 (297)
T ss_dssp EE-EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS---CCE
T ss_pred EE-EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC---CEE
Confidence 11 112235799999999999984 8999999999999999987431 111 2345778899999987 689
Q ss_pred EEEcCCCeEEEEECCC
Q 009203 434 QTGTPGRQLRLYDIRL 449 (540)
Q Consensus 434 ~~~~~dg~v~i~d~~~ 449 (540)
++++.|+.|++|+...
T Consensus 270 as~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 270 ALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEETTSCEEEEEECT
T ss_pred EEEcCCCcEEEEEECC
Confidence 9999999999999864
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=297.16 Aligned_cols=256 Identities=15% Similarity=0.205 Sum_probs=198.6
Q ss_pred hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecC--CCeEEEE
Q 009203 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSA 292 (540)
Q Consensus 217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~ 292 (540)
.++.||.+.|++++|+|+ +.+|++|+.||.|+|||+..+. ....+ .+|...|++++|+++ +++|+++
T Consensus 3 ~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l--------~~h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTL--------TGHEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp -----CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEE--------CCCSSCEEEEEECCTTSCSEEEEE
T ss_pred eecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceec--------cCCcCceEEEEecCCCCCCEEEEE
Confidence 357899999999999996 8899999999999999997432 22222 589999999999988 9999999
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
+.||.|++||+.++.. .....+.. |...|.+++|+| + +.++++|+.||.|++||++++.. ......
T Consensus 74 ----s~Dg~I~vwd~~~~~~-~~~~~~~~---h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~---~~~~~~ 141 (753)
T 3jro_A 74 ----SYDGKVLIWKEENGRW-SQIAVHAV---HSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGT---TSPIII 141 (753)
T ss_dssp ----ETTSCEEEEEEETTEE-EEEEEECC---CSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSC---CCCEEE
T ss_pred ----eCCCeEEEEECCCCcc-cccccccC---CCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCC---cceeEe
Confidence 9999999999997621 23444443 678899999999 7 99999999999999999998754 223333
Q ss_pred ccCCcceeEEEeccC-------------CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc
Q 009203 371 NLHSSAVMGVAGMQQ-------------KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
.+|...|.+++|+|. +.++++|+.||.|++||++
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~--------------------------------- 188 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--------------------------------- 188 (753)
T ss_dssp ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE---------------------------------
T ss_pred ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc---------------------------------
Confidence 568999999999984 4555555555555555544
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC---CCEEEEEeCCCcEEEEeccCCCCc---ccccccccc
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD---GLYITSGSADPVIHLFDIRYSANK---PSQSIRAHQ 511 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~h~ 511 (540)
+....... ...+.+|...|++++|+|+ +.+|++|+.||.|++||+...... .+.....|.
T Consensus 189 -----------~~~~~~~~---~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 254 (753)
T 3jro_A 189 -----------SDAQTYVL---ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254 (753)
T ss_dssp -----------TTTTEEEE---EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS
T ss_pred -----------CCccccee---eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC
Confidence 33211111 1134578889999999999 899999999999999999974222 333445688
Q ss_pred cceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 512 KRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+.|++++|+|+|++|++|+.||.|++|++
T Consensus 255 ~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 255 DVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 89999999999999999999999999985
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-32 Score=270.47 Aligned_cols=298 Identities=11% Similarity=0.043 Sum_probs=223.6
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC---Ccceeecccc---------------------------------
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG---SGASLLSTTD--------------------------------- 267 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~---~~~~~~~~~~--------------------------------- 267 (540)
.+|.+++|+|| |++|++++ ++.|++||+.+++ .+..+.....
T Consensus 5 ~p~~~v~~s~d-g~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRD-GSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSS-SSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCC-CCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 58999999996 77666664 7799999999887 4433331110
Q ss_pred -------------cCCCCCCCCceeEEEecCCCeE-EEEeecCCCCCeEEEEecC--CCCCceeEEeecCCCCcccceeE
Q 009203 268 -------------CLSPKHRRWPEDIAWHPQGNSL-FSAHTADSGDSQISVLNLN--KTKGRACVTFLDDKPHVKGIINS 331 (540)
Q Consensus 268 -------------~~~~~h~~~V~~~~~~~~~~~l-~s~~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~v~~ 331 (540)
...++|...|.+++|+|++++| +++ +.|+.|++||+. ++. .+..+..+ .+...|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----~~dg~v~iwd~~~~~~~---~~~~~~~~-~~~~~v~~ 154 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACA----DSDKSLLVFDVDKTSKN---VLKLRKRF-CFSKRPNA 154 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEE----GGGTEEEEEEECSSSSS---CEEEEEEE-ECSSCEEE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEE----CCCCeEEEEECcCCCCc---eeeeeecc-cCCCCceE
Confidence 0012566789999999999996 888 899999999998 653 34444321 13567999
Q ss_pred EEEeCCCCCEEEEEecCCcEEEEecCCCCCcc-ccceeecccCCcceeEEEeccC---CCEEEEEeCCCeEEEEECCCCC
Q 009203 332 IIFLPWENPCFATGGSDHAVVLWSERDAEDSW-KPKALHRNLHSSAVMGVAGMQQ---KQIVLSAGADKRIIGFDAGVGR 407 (540)
Q Consensus 332 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~ 407 (540)
++|+| ++.+|++|+.||.|++|++.++.... ....+ .+|...|++++|+|+ +.+|++++.|+.|++||++++.
T Consensus 155 ~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~ 231 (450)
T 2vdu_B 155 ISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPI--LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF 231 (450)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCS--EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceee--ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence 99999 99999999999999999998876422 11122 458999999999999 9999999999999999999888
Q ss_pred eeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc--c----------------ccCccc
Q 009203 408 ADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK--Q----------------ESSESQ 467 (540)
Q Consensus 408 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~----------------~~~~~~ 467 (540)
.+... .+...+.++.|+ ++ .+|++++.|+.|++||+.+++......... . ......
T Consensus 232 ~~~~~~~~h~~~v~~~~~s-d~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 232 IVDKWLFGHKHFVSSICCG-KD---YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp CEEEECCCCSSCEEEEEEC-ST---TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred eeeeeecCCCCceEEEEEC-CC---CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 76552 456788999999 65 699999999999999999887533221000 0 001234
Q ss_pred cCeEEEEEcCCCCEEEEEe-CCCcEEEEec--cCC-CCcccccccccccceeEEEEcCCCCEEEEE-Ec------CCcEE
Q 009203 468 SALINQSWSPDGLYITSGS-ADPVIHLFDI--RYS-ANKPSQSIRAHQKRVFKAVWHYSHPLLISI-SS------DLNIG 536 (540)
Q Consensus 468 ~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~--~~~-~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~-~~------dg~v~ 536 (540)
..|.+++|+|++++|++++ .|+.|+||++ ... ....+..+..| +.|.+++|+|++ +++++ +. +..|.
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~ 385 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAK 385 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceE
Confidence 5799999999999999998 8999999999 331 01556677777 789999999964 44444 32 45588
Q ss_pred EEeC
Q 009203 537 LHKI 540 (540)
Q Consensus 537 iw~l 540 (540)
+|.+
T Consensus 386 v~~~ 389 (450)
T 2vdu_B 386 FIEY 389 (450)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8863
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.6e-32 Score=270.22 Aligned_cols=298 Identities=16% Similarity=0.226 Sum_probs=220.9
Q ss_pred CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------------
Q 009203 153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN---------------- 216 (540)
Q Consensus 153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~---------------- 216 (540)
.|...|.++++.|... .+++++.|+.|++|+..
T Consensus 26 ~~~~~V~~v~~s~~g~-------------------------------~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 74 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-------------------------------LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVY 74 (447)
T ss_dssp CGGGSEEEEEECSSSS-------------------------------EEEEEETTSEEEEEEECC-----CCCCCCEEEE
T ss_pred cccCcEEEEEECCCCC-------------------------------EEEEEcCCCeEEEEEecCCCCCCcccccceeEe
Confidence 4667899999988742 57788889999999643
Q ss_pred hhccccc------------CceEEEEEecCCC--cEEEEEeCCceEEEEEcCCCCCcceeec------------------
Q 009203 217 HVSSLHK------------RKLRSLSLNPVNE--QLFVTSALDGVIRLWQLQSRGSGASLLS------------------ 264 (540)
Q Consensus 217 ~~~~~h~------------~~V~~l~~spd~~--~~l~tg~~dg~v~iw~~~~~~~~~~~~~------------------ 264 (540)
..+.+|. +.|++++|+|+ + .+|++|+.|++|++||+..+........
T Consensus 75 ~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~-~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (447)
T 3dw8_B 75 STFQSHEPEFDYLKSLEIEEKINKIRWLPQ-KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR 153 (447)
T ss_dssp EEEECCCCEEEGGGTEEECCCCCEEEECCC-CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred cccccccccccccccccccCceEEEEEcCC-CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence 2477998 88999999996 6 7999999999999999976432100000
Q ss_pred --------------ccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeec----CCCCcc
Q 009203 265 --------------TTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLD----DKPHVK 326 (540)
Q Consensus 265 --------------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~ 326 (540)
.......+|...|.+++|+|++++|+++ .|+.|++||+.+. ...+..+. ....|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~ 226 (447)
T 3dw8_B 154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-----DDLRINLWHLEIT--DRSFNIVDIKPANMEELT 226 (447)
T ss_dssp CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-----CSSEEEEEETTEE--EEEEEEEECCCSSGGGCC
T ss_pred eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-----CCCeEEEEECCCC--CceeeeeecccccccccC
Confidence 0001125899999999999999999997 4999999999853 23343221 111367
Q ss_pred cceeEEEEeCCCC-CEEEEEecCCcEEEEecCCCCCccccceeecccCCc------------ceeEEEeccCCCEEEEEe
Q 009203 327 GIINSIIFLPWEN-PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS------------AVMGVAGMQQKQIVLSAG 393 (540)
Q Consensus 327 ~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~v~~l~~s~~~~~l~~~~ 393 (540)
..|.+++|+| ++ .+|++|+.||.|++||++++...... ......|.. .|.+++|+|+|++|++++
T Consensus 227 ~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 227 EVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRH-SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp CCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTT-CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred cceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccce-eeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 8899999999 76 99999999999999999987741111 111233554 899999999999999999
Q ss_pred CCCeEEEEECCC-CCeeeeeccCcc----------------EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 394 ADKRIIGFDAGV-GRADFKHQIESK----------------CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 394 ~dg~i~iwd~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
. +.|++||+++ ++++........ +..+.|+|++ .+|++|+.||.|++||+.+++.....
T Consensus 305 ~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 305 Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD---SVVMTGSYNNFFRMFDRNTKRDITLE 380 (447)
T ss_dssp S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS---SEEEEECSTTEEEEEETTTCCEEEEE
T ss_pred C-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC---CEEEEeccCCEEEEEEcCCCcceeee
Confidence 9 9999999997 666555443332 2348899987 68999999999999999987643211
Q ss_pred eccc--------------------------cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 457 FGWK--------------------------QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 457 ~~~~--------------------------~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
. .. .....+...|..++|+|+|++||+++.++ +++|...
T Consensus 381 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 381 A-SRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp C-CSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred e-cccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 0 00 00113456789999999999999998776 8888654
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.8e-31 Score=258.63 Aligned_cols=276 Identities=12% Similarity=0.096 Sum_probs=203.9
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.+|.+.|++++|+|| +.+|++|+.++ ++||++......... +...+..++|.++++.++.. ++.
T Consensus 15 ~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~---~~~ 79 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVHPVAHIMSQ----------EMRHLSKVRMLHRTNYVAFV---TGV 79 (355)
T ss_dssp ----CCCCCEEEECTT-SSEEEEECSSE-EEEEEETTEEEEEEE----------ECSCCCEEEECTTSSEEEEE---CSS
T ss_pred cccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecCCcceeeee----------ecCCeEEEEEcCCCCEEEEE---ECC
Confidence 4789999999999996 89999998775 789998865433222 11247789999998887543 177
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC-CCccccceeecccCCcce
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA-EDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v 377 (540)
|+.|++||+.++ ..+..+. +...|.+++|++ + .++++ .|+.|++||+.++ +.+. .+.. ..
T Consensus 80 d~~v~iWd~~~~---~~~~~~~----~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~---~~~~-----~~ 140 (355)
T 3vu4_A 80 KEVVHIWDDVKK---QDVSRIK----VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRIT---DDIR-----FG 140 (355)
T ss_dssp TTEEEEEETTTT---EEEEEEE----CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSS---CCEE-----EE
T ss_pred ccEEEEEECCCC---cEEEEEE----CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeE---Eecc-----CC
Confidence 899999999986 4455554 245799999987 4 45444 4789999999987 4422 2211 34
Q ss_pred eEEEeccCCCEEEE--EeCCCeEEEEECCCCC-----------------eeeeeccCccEEEEeecCCCCCceEEEEEcC
Q 009203 378 MGVAGMQQKQIVLS--AGADKRIIGFDAGVGR-----------------ADFKHQIESKCMSVLPNPCDFNLFMVQTGTP 438 (540)
Q Consensus 378 ~~l~~s~~~~~l~~--~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (540)
..+++++ .++++ |+.||.|++||+.++. ......+...+.++.|+|++ .+|++|+.
T Consensus 141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g---~~l~s~s~ 215 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS---DMVATCSQ 215 (355)
T ss_dssp EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS---SEEEEEET
T ss_pred ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC---CEEEEEeC
Confidence 4556666 56665 5789999999999865 22334556789999999987 79999999
Q ss_pred CCe-EEEEECCCCcceeeeeccccccC-c-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc------
Q 009203 439 GRQ-LRLYDIRLRQTEIHAFGWKQESS-E-SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA------ 509 (540)
Q Consensus 439 dg~-v~i~d~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~------ 509 (540)
|++ |++||+++++.... +. + |...|++++|+|+|++|++++.|+.|+|||+..........+..
T Consensus 216 d~~~v~iwd~~~~~~~~~-------~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 216 DGTIIRVFKTEDGVLVRE-------FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp TCSEEEEEETTTCCEEEE-------EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred CCCEEEEEECCCCcEEEE-------EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 998 99999998875442 23 4 88899999999999999999999999999998632222221111
Q ss_pred ---------------cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 510 ---------------HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 510 ---------------h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+......++|+++|++|++++.||.+++|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 1223477999999999999999999999974
No 106
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.1e-32 Score=259.58 Aligned_cols=250 Identities=15% Similarity=0.180 Sum_probs=192.9
Q ss_pred eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhcccc
Q 009203 150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSSLH 222 (540)
Q Consensus 150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~~h 222 (540)
.+.+|...|.++++.|... .+++++.|++|++|+.. ..+.+|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~-------------------------------~lasgs~D~~v~lwd~~~~~~~~~~~l~gH 56 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGT-------------------------------RLATCSSDRSVKIFDVRNGGQILIADLRGH 56 (316)
T ss_dssp ------CCEEEEEECGGGC-------------------------------EEEEEETTTEEEEEEEETTEEEEEEEEECC
T ss_pred ecccccCeEEEeeEcCCCC-------------------------------EEEEEeCCCeEEEEEecCCCcEEEEEEcCC
Confidence 3458999999999988642 58889999999999753 347899
Q ss_pred cCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeecCCCC
Q 009203 223 KRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTADSGD 299 (540)
Q Consensus 223 ~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~~~~d 299 (540)
.+.|++++|+|+ .+.+|++|+.|++|+|||+.++....... . .+|...|.+++|+|+ +.+|+++ +.|
T Consensus 57 ~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~----~~h~~~V~~v~~~p~~~g~~lasg----s~D 126 (316)
T 3bg1_A 57 EGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE--H----AGHDSSVNSVCWAPHDYGLILACG----SSD 126 (316)
T ss_dssp SSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE--E----CCCSSCCCEEEECCTTTCSCEEEE----CSS
T ss_pred CccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE--c----cCCCCceEEEEECCCCCCcEEEEE----cCC
Confidence 999999999862 37899999999999999998764221111 1 589999999999998 7899999 999
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-----------------CCEEEEEecCCcEEEEecCCCCCc
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-----------------NPCFATGGSDHAVVLWSERDAEDS 362 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------------~~~l~s~~~dg~i~iwd~~~~~~~ 362 (540)
+.|++||+..+........+. .|...|.+++|+| + +.+|++|+.|++|++||++.....
T Consensus 127 ~~i~lwd~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 127 GAISLLTYTGEGQWEVKKINN---AHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp SCEEEEEECSSSCEEECCBTT---SSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred CCEEEEecCCCCCcceeeeec---cccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 999999998652211122222 4677899999999 5 468999999999999999754310
Q ss_pred cccceeecccCCcceeEEEeccCC----CEEEEEeCCCeEEEEECCCCC-----eeeeeccCccEEEEeecCCCCCceEE
Q 009203 363 WKPKALHRNLHSSAVMGVAGMQQK----QIVLSAGADKRIIGFDAGVGR-----ADFKHQIESKCMSVLPNPCDFNLFMV 433 (540)
Q Consensus 363 ~~~~~~~~~~~~~~v~~l~~s~~~----~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 433 (540)
. ......+|...|.+++|+|++ .+|++++.|++|++||+.... ......+...+.+++|+|++ .+|
T Consensus 203 ~--~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---~~l 277 (316)
T 3bg1_A 203 K--EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA---NIL 277 (316)
T ss_dssp E--EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT---CCE
T ss_pred c--eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC---CEE
Confidence 0 112235699999999999986 889999999999999997631 11223456788999999988 689
Q ss_pred EEEcCCCeEEEEECCC
Q 009203 434 QTGTPGRQLRLYDIRL 449 (540)
Q Consensus 434 ~~~~~dg~v~i~d~~~ 449 (540)
++++.|+.|++|+...
T Consensus 278 as~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 278 AVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEESSSCEEEEEECT
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999999763
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.9e-32 Score=260.88 Aligned_cols=245 Identities=13% Similarity=0.099 Sum_probs=206.9
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCC
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDH 349 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg 349 (540)
.+|.+.|++++|+|++++|+++ +.|+.|++||+.++........+. .|...|.+++|+| ++. +|++|+.||
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~----~~d~~v~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~l~~~~~dg 79 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLIT----SWDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCNFID-NTDLQIYVGTVQG 79 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEE----ETTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEEEEE-SSSEEEEEEETTS
T ss_pred cCCCCcEEEEEEcCCCCEEEEE----cCCCeEEEEEeCCCCccccceeee---ecCCceEEEEECC-CCCcEEEEEcCCC
Confidence 4899999999999999999999 999999999998774322333333 2577899999999 899 999999999
Q ss_pred cEEEEec-CCCCCccccceeeccc--CCcceeEEEeccCCCEEEEEeCCCeEEEEECCC---------CCeeeeeccCcc
Q 009203 350 AVVLWSE-RDAEDSWKPKALHRNL--HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV---------GRADFKHQIESK 417 (540)
Q Consensus 350 ~i~iwd~-~~~~~~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~ 417 (540)
.|++||+ .++.. . ...+ |...|.+++|+| +.+|++++.|+.|++||+++ ++++........
T Consensus 80 ~i~~wd~~~~~~~----~--~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T 1yfq_A 80 EILKVDLIGSPSF----Q--ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp CEEEECSSSSSSE----E--ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred eEEEEEeccCCce----E--eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc
Confidence 9999999 87652 2 2355 899999999999 99999999999999999987 776666667788
Q ss_pred EEEEeecCCCCCceEEEEEcCCCeEEEEECCC-CcceeeeeccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 009203 418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL-RQTEIHAFGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFD 495 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd 495 (540)
+.++.++|+ .+++++.|+.|++||+++ ....... ....|...|.+++|+| ++++|++++.||.|++|+
T Consensus 153 v~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 153 IFTMDTNSS-----RLIVGMNNSQVQWFRLPLCEDDNGTI-----EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp EEEEEECSS-----EEEEEESTTEEEEEESSCCTTCCCEE-----EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred eEEEEecCC-----cEEEEeCCCeEEEEECCcccccccee-----eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 999999985 389999999999999997 5432221 2245778899999999 999999999999999999
Q ss_pred ccCC--C--Cccccccccccc---------ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 496 IRYS--A--NKPSQSIRAHQK---------RVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 496 ~~~~--~--~~~~~~~~~h~~---------~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++.. . ......+..|.. .|++++|+|++++|++++.||.|++||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 9873 0 266677777755 9999999999999999999999999985
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-31 Score=267.67 Aligned_cols=262 Identities=16% Similarity=0.248 Sum_probs=212.4
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
.+++++.|++|++|+.. ..+.+|.+.|++++| + +.+|++|+.||+|++||+.+++....+ .+|.
T Consensus 145 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~--------~~h~ 213 (435)
T 1p22_A 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGEMLNTL--------IHHC 213 (435)
T ss_dssp EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCCEEEEE--------CCCC
T ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEECCCCcEEEEE--------cCCC
Confidence 57788899999999765 457899999999999 3 679999999999999999998776665 5788
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
..|.+++|+ +..|+++ +.|+.|++||+.++........+.+ |...|.+++| ++.+|++|+.||.|++|
T Consensus 214 ~~v~~l~~~--~~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~v~~~~~---~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTC----SKDRSIAVWDMASPTDITLRRVLVG---HRAAVNVVDF---DDKYIVSASGDRTIKVW 281 (435)
T ss_dssp SCEEEEECC--TTEEEEE----ETTSCEEEEECSSSSCCEEEEEECC---CSSCEEEEEE---ETTEEEEEETTSEEEEE
T ss_pred CcEEEEEEc--CCEEEEe----eCCCcEEEEeCCCCCCceeeeEecC---CCCcEEEEEe---CCCEEEEEeCCCeEEEE
Confidence 999999997 4589999 9999999999998754333355554 6788999999 56899999999999999
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEE
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMV 433 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 433 (540)
|+++++. ...+ .+|...|.++.|+ +.++++|+.||.|++||+++++.+.... +...+.++.+++ .++
T Consensus 282 d~~~~~~---~~~~--~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-----~~l 349 (435)
T 1p22_A 282 NTSTCEF---VRTL--NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-----KRI 349 (435)
T ss_dssp ETTTCCE---EEEE--ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCS-----SEE
T ss_pred ECCcCcE---EEEE--cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecC-----CEE
Confidence 9999875 2233 4689999999994 6899999999999999999998877654 456788888843 589
Q ss_pred EEEcCCCeEEEEECCCCcceeeeec--cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 434 QTGTPGRQLRLYDIRLRQTEIHAFG--WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 434 ~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
++|+.||.|++||+.+........+ ....+.+|...|++++| ++.+|++|+.||.|++||+.+
T Consensus 350 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 9999999999999976541110000 11245689999999999 788999999999999999987
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.1e-31 Score=265.40 Aligned_cols=261 Identities=16% Similarity=0.258 Sum_probs=207.0
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC----------CCcceeecccccCCCCCCCCceeEEEecCCC-
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR----------GSGASLLSTTDCLSPKHRRWPEDIAWHPQGN- 287 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~----------~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~- 287 (540)
..+|.+.|++++|+|+++.+|++|+.||.|+||++... .....+ .+|...|.+++|+|++.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL--------RGHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE--------ECCSSCCCCEEECTTSTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe--------cCCCCCeEEEEeCCCCCC
Confidence 35899999999999965789999999999999999862 222222 47899999999999998
Q ss_pred eEEEEeecCCCCCeEEEEecCCCCCc-ee---EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcc
Q 009203 288 SLFSAHTADSGDSQISVLNLNKTKGR-AC---VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSW 363 (540)
Q Consensus 288 ~l~s~~~~~~~d~~i~vwd~~~~~~~-~~---~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 363 (540)
+|+++ +.||.|++||+.++... .. ...+. .|...|.+++|+|.++.+|++++.||.|++||++++....
T Consensus 196 ~l~s~----~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 196 YLLSA----SDDHTICLWDINATPKEHRVIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp EEEEE----CTTSCEEEEETTSCCBGGGEEECSEEEC---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred eEEEE----eCCCeEEEEeCCCCCCCCceeccceeec---CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence 99999 99999999999874321 11 22333 3678899999999778899999999999999999874211
Q ss_pred ccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCC-CCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203 364 KPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGV-GRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGR 440 (540)
Q Consensus 364 ~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg 440 (540)
....+ ..|...|++++|+|++. +|++|+.||.|++||+++ +..+... .+...+.++.|+|++. .+|++++.|+
T Consensus 269 ~~~~~--~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--~~l~s~~~d~ 344 (430)
T 2xyi_A 269 PSHTV--DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--TILASSGTDR 344 (430)
T ss_dssp CSEEE--ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT--TEEEEEETTS
T ss_pred ceeEe--ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC--CEEEEEeCCC
Confidence 12222 45899999999999887 688999999999999998 4444443 3567899999999874 3799999999
Q ss_pred eEEEEECCCCcceeee-------eccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccC
Q 009203 441 QLRLYDIRLRQTEIHA-------FGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRY 498 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~ 498 (540)
.|++||+......... ........+|...|++++|+|++. +|++++.||.|+||++..
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 9999999873321100 001124567889999999999999 899999999999999984
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=269.73 Aligned_cols=263 Identities=7% Similarity=-0.016 Sum_probs=203.8
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
.-..+|.+|+|+|| |+++|+++.|++|+ |...++ .+ .+|...|.+++|+|+| .++
T Consensus 13 ~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~~~~~---~l--------~gh~~~v~~V~FsPdg-----------~~~ 67 (588)
T 2j04_A 13 EFEDWKNNLTWARD-GTLYLTTFPDISIG--QPKYAK---DI--------NCNSKNLFHVKEFPLE-----------FEN 67 (588)
T ss_dssp CCSSSSCCEEECTT-SCEEEECSSSEEEE--EECCCS---CC--------SSBGGGTEEEEEECCC-----------CCC
T ss_pred HhhccEEEEEECCC-CCEEEEEcCCceee--cccccc---ee--------cCCCccEEEEEECCCC-----------Ccc
Confidence 44578999999996 99999999999999 644332 22 4899999999999987 245
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc-----
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS----- 375 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----- 375 (540)
.+.+|+.... ..+.. .+...|.+++|+| +|.+|++++.||.|++||..+ + ...+ . |..
T Consensus 68 ~~~~~~~~~~------~~~~~--~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~---l~~l--~-~~~~~~~~ 130 (588)
T 2j04_A 68 KLDFELAQQN------GLLNS--QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--M---LTNL--D-SKGNLSSR 130 (588)
T ss_dssp TTTTSCCCSS------CSSTT--SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--E---EEEC--C-CSSCSTTT
T ss_pred eEEEEeCCCc------eEeec--CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--e---eeec--c-CCCccccc
Confidence 5555554321 12221 1357799999999 999999999999999999544 1 1222 2 433
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-------eeee-----ccCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-------DFKH-----QIESKCMSVLPNPCDFNLFMVQTGTPGRQLR 443 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 443 (540)
.|.+++|||||++|++|+.||+|++||+..+.. +... .+...+.+++|+|++ +++++.|++|+
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-----Laass~D~tVr 205 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-----LVAALSNNSVF 205 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-----EEEEETTCCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-----EEEEeCCCeEE
Confidence 599999999999999999999999999998753 2332 234689999999974 78888999999
Q ss_pred EEECCCCcceeeeecccccc-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEE--c
Q 009203 444 LYDIRLRQTEIHAFGWKQES-SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW--H 520 (540)
Q Consensus 444 i~d~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~--s 520 (540)
+||+.+...... ...+ .+|...|.+++|+ |++||+++ ++.|++||+.. +.......+|.+.|++++| +
T Consensus 206 lWd~~~~~~~~~----~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~--~~~~~~~~gh~~~V~~va~~~s 276 (588)
T 2j04_A 206 SMTVSASSHQPV----SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKN--YSISSLKTGSLENFHIIPLNHE 276 (588)
T ss_dssp EECCCSSSSCCC----EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTT--TEEEEEECSCCSCCCEEEETTC
T ss_pred EEECCCCccccc----eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCC--CeEEEEEcCCCceEEEEEeeeC
Confidence 999987663200 0122 3677899999999 68999997 69999999996 3442333379999999999 9
Q ss_pred CCCCEEEEEEcCCcEEEEeC
Q 009203 521 YSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 521 ~~~~~l~s~~~dg~v~iw~l 540 (540)
|++..|++++.||+ ++|.+
T Consensus 277 ~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 277 KESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp SSCEEEEECSSCEE-EEEES
T ss_pred CCCCEEEEEcCCCC-EEEee
Confidence 99999999999999 99974
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.4e-31 Score=255.74 Aligned_cols=297 Identities=14% Similarity=0.127 Sum_probs=207.7
Q ss_pred eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc---------hhcc
Q 009203 150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN---------HVSS 220 (540)
Q Consensus 150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~---------~~~~ 220 (540)
.+.+|...|.++.+.|... .+++++.|++|++|+.. ..+.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~-------------------------------~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 54 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR-------------------------------HVATCSSDQHIKVFKLDKDTSNWELSDSWR 54 (351)
T ss_dssp EECCCSSCEEEEEECSSSS-------------------------------EEEEEETTSEEEEEEECSSSCCEEEEEEEE
T ss_pred cCcccccceeEEEEcCCCC-------------------------------EEEEeeCCCeEEEEECCCCCCcceecceec
Confidence 4568999999999998743 57788899999999654 2357
Q ss_pred cccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCcc-----eeecccccCCCCCCCCceeEEEecC--CCeEEEE
Q 009203 221 LHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSGA-----SLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSA 292 (540)
Q Consensus 221 ~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~ 292 (540)
+|.+.|++++|+|. ++.+|++|+.||.|++||+..+.... ...... .+|...|.+++|+|+ +.+|+++
T Consensus 55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~ 130 (351)
T 3f3f_A 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL----NDSKGSLYSVKFAPAHLGLKLACL 130 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE----CCCSSCEEEEEECCGGGCSEEEEE
T ss_pred cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee----cccCCceeEEEEcCCCCCcEEEEe
Confidence 99999999999993 28999999999999999998764321 111111 478999999999999 9999999
Q ss_pred eecCCCCCeEEEEecCCCCCceeEE------eecC-CCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCcc
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVT------FLDD-KPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSW 363 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~------~~~~-~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~ 363 (540)
+.|+.|++||+.++....... .+.. ...+...+.+++|+|. ++.++++++.|+.+.+|+...+..
T Consensus 131 ----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 204 (351)
T 3f3f_A 131 ----GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-- 204 (351)
T ss_dssp ----ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE--
T ss_pred ----cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce--
Confidence 999999999998764322211 1111 1135678999999993 289999999999998888777653
Q ss_pred ccceeecccCCcceeEEEeccCC----CEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEEEc-
Q 009203 364 KPKALHRNLHSSAVMGVAGMQQK----QIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGT- 437 (540)
Q Consensus 364 ~~~~~~~~~~~~~v~~l~~s~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~- 437 (540)
.......+|...|++++|+|++ ++|++++.||.|++||++.+......... .........+.. ..+..+.
T Consensus 205 -~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 280 (351)
T 3f3f_A 205 -HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV---DMDAQGRS 280 (351)
T ss_dssp -EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------
T ss_pred -eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc---cccccccc
Confidence 1233345699999999999998 89999999999999999876543332111 111111111111 2222222
Q ss_pred ---CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 438 ---PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 438 ---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
....+.+|+...... ...+.+|...|++++|+|++++|++|+.||.|+||++.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVEL-------LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ----------CCSEEEEE-------EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ccccceeeeecccccccE-------EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 223344444332221 124567999999999999999999999999999999997
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-31 Score=255.37 Aligned_cols=271 Identities=10% Similarity=0.035 Sum_probs=203.4
Q ss_pred EEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203 230 SLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK 309 (540)
Q Consensus 230 ~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~ 309 (540)
.+.+| +.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ ++++ +.|++|++|+...
T Consensus 43 ~~~~d-~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------~~~v~~~~~~~~---~~s~----s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 43 SMYYD-KWVCMCRCEDGALHFTQLKDSKTITTIT----------TPNPRTGGEHPA---IISR----GPCNRLLLLYPGN 104 (343)
T ss_dssp SSSEE-EEEEEEEEETTEEEEEEESSSSCEEEEE----------EECCCTTCCCCS---EEEE----CSTTEEEEEETTT
T ss_pred hhcCC-CCEEEEECCCCcEEEEECCCCcEEEEEe----------cCCceeeeeCCc---eEEe----cCCCeEEEEEccC
Confidence 34454 7899999999999999999988766664 244778889987 8888 9999999998763
Q ss_pred C------CCceeEEeecCCCCcccceeEEEEeCC-CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 310 T------KGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 310 ~------~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
. .....+..+.. .|.+.|.+++|+|. ++.+|++|+.||+|++||+++++. .......+...|.+++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~~i~~~~~ 178 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEV--DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ----YIVHSAKSDVEYSSGVL 178 (343)
T ss_dssp EEEEEETTTCCEEEEEEC--CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE----EEEECCCSSCCCCEEEE
T ss_pred ceEEeecCCcceeEEeec--CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE----EEEEecCCCCceEEEEE
Confidence 2 01122323221 24578999999983 578999999999999999998874 22222346668999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCee-eeec--cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRAD-FKHQ--IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
+|+|.+|++|+.||.|++||+++++.+ ..+. +...+.++.|+|++ .+|++++ ++.|++||+++........
T Consensus 179 ~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g---~~l~s~~-~~~v~iwd~~~~~~~~~~~-- 252 (343)
T 3lrv_A 179 HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG---YWMVVEC-DQTVVCFDLRKDVGTLAYP-- 252 (343)
T ss_dssp CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTS---SEEEEEE-SSBEEEEETTSSTTCBSSC--
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCC---CEEEEEe-CCeEEEEEcCCCCcceeec--
Confidence 999999999999999999999998876 4433 47889999999987 6899988 5599999999876533211
Q ss_pred ccccCccccCe--EEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCcccccccccccceeEEEEcC---CCCEEEEEEcCC
Q 009203 460 KQESSESQSAL--INQSWSPDGLYITSGSA-DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY---SHPLLISISSDL 533 (540)
Q Consensus 460 ~~~~~~~~~~v--~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~---~~~~l~s~~~dg 533 (540)
.+..|...+ .+++|+|+|++|++++. |+.|+||++... ... +.. .++..++|.+ ++..|++++.||
T Consensus 253 --~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~--~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 253 --TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK--TKN--WTK--DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp --CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT--TCS--EEE--EEEEECCC----CCCCEEEEEEETT
T ss_pred --ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc--ccc--eEe--cCceeEecCccccccceeEEEecCC
Confidence 112233334 46999999999999988 999999999763 211 111 5678888988 888999999999
Q ss_pred cEEEE
Q 009203 534 NIGLH 538 (540)
Q Consensus 534 ~v~iw 538 (540)
.+.++
T Consensus 325 ~~~~~ 329 (343)
T 3lrv_A 325 GIAAI 329 (343)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 88876
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.6e-30 Score=259.52 Aligned_cols=283 Identities=10% Similarity=0.046 Sum_probs=226.1
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
..+.+++|+| ++.++++++.|+.|++||+.+++......... ..+|...|.+++|++++.+++++ +.|+.|+
T Consensus 123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~s~----~~d~~v~ 194 (433)
T 3bws_A 123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK---YKKKLGFVETISIPEHNELWVSQ----MQANAVH 194 (433)
T ss_dssp SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHH---HHTTCCEEEEEEEGGGTEEEEEE----GGGTEEE
T ss_pred CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCccc---ccccCCceeEEEEcCCCEEEEEE----CCCCEEE
Confidence 4566999999 58999999999999999999887554222111 14788899999999999999999 9999999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
+||+.++ ..+..+.. |...+.+++|+| ++..++ +++.|+.|++||+++++.. ..+ .+...+.+++|
T Consensus 195 ~~d~~~~---~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~---~~~---~~~~~~~~~~~ 261 (433)
T 3bws_A 195 VFDLKTL---AYKATVDL---TGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEI---RKT---DKIGLPRGLLL 261 (433)
T ss_dssp EEETTTC---CEEEEEEC---SSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEE---EEC---CCCSEEEEEEE
T ss_pred EEECCCc---eEEEEEcC---CCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEE---EEe---cCCCCceEEEE
Confidence 9999876 34444443 456799999999 887774 5558999999999987641 111 23456999999
Q ss_pred ccCCCEEEEEe--------CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 383 MQQKQIVLSAG--------ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 383 s~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
+|+|+.+++++ .||.|++||+.+++.+........+..+.|+|++. .++++++.++.|++||+.+++...
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~--~l~~~~~~~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN--KIYVSDMCCSKIEVYDLKEKKVQK 339 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT--EEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC--EEEEEecCCCEEEEEECCCCcEEE
Confidence 99999999888 58899999999988776665566788899999863 366778999999999999766432
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEEeC---------------CCcEEEEeccCCCCcccccccccccceeEEEE
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSGSA---------------DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW 519 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~---------------dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~ 519 (540)
. + .+...+.+++|+|+|++|++++. ||.|++||+.+ ++.+..+.. ...+.+++|
T Consensus 340 ~-~-------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~--~~~~~~~~~-~~~~~~~~~ 408 (433)
T 3bws_A 340 S-I-------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT--DTVKEFWEA-GNQPTGLDV 408 (433)
T ss_dssp E-E-------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT--TEEEEEEEC-SSSEEEEEE
T ss_pred E-e-------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC--CcEEEEecC-CCCCceEEE
Confidence 2 1 24567999999999999888876 57999999987 666666665 457899999
Q ss_pred cCCCCEEEEEEc-CCcEEEEeC
Q 009203 520 HYSHPLLISISS-DLNIGLHKI 540 (540)
Q Consensus 520 s~~~~~l~s~~~-dg~v~iw~l 540 (540)
+|+|++|++++. |+.|++|++
T Consensus 409 s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 409 SPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp CTTSCEEEEEETTTTEEEEEEE
T ss_pred cCCCCEEEEEECCCCeEEEEEe
Confidence 999999988875 999999985
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=254.14 Aligned_cols=287 Identities=11% Similarity=0.118 Sum_probs=223.4
Q ss_pred CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhc
Q 009203 147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVS 219 (540)
Q Consensus 147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~ 219 (540)
....+.+|...|.++++.|... ....+++++.|+.|++|+.. ..+
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~----------------------------~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 82 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTL----------------------------PGNFLIAGSWANDVRCWEVQDSGQTIPKAQ 82 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTS----------------------------SSEEEEEEETTSEEEEEEECTTSCEEEEEE
T ss_pred eeEeccCCCCceEEEEEcCCCC----------------------------CceEEEEECCCCcEEEEEcCCCCceeEEEe
Confidence 3445678999999999998720 01257788899999999754 357
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE--ecCCCeEEEEeecCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW--HPQGNSLFSAHTADS 297 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~--~~~~~~l~s~~~~~~ 297 (540)
.+|.+.|++++|+|+ +.+|++|+.||.|++||+.+++.... .+|...|.+++| ++++.+|+++ +
T Consensus 83 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~l~~~----~ 148 (368)
T 3mmy_A 83 QMHTGPVLDVCWSDD-GSKVFTASCDKTAKMWDLSSNQAIQI---------AQHDAPVKTIHWIKAPNYSCVMTG----S 148 (368)
T ss_dssp EECSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEE---------EECSSCEEEEEEEECSSCEEEEEE----E
T ss_pred ccccCCEEEEEECcC-CCEEEEEcCCCcEEEEEcCCCCceee---------ccccCceEEEEEEeCCCCCEEEEc----c
Confidence 899999999999995 99999999999999999998764432 268899999999 8899999999 9
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.|+.|++||+.+++ .+..+.. ...+.++.+.+ ..+++++.++.+.+|+++..... .......+...+
T Consensus 149 ~dg~i~vwd~~~~~---~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~ 215 (368)
T 3mmy_A 149 WDKTLKFWDTRSSN---PMMVLQL----PERCYCADVIY---PMAVVATAERGLIVYQLENQPSE---FRRIESPLKHQH 215 (368)
T ss_dssp TTSEEEEECSSCSS---CSEEEEC----SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEE---EEECCCSCSSCE
T ss_pred CCCcEEEEECCCCc---EEEEEec----CCCceEEEecC---CeeEEEeCCCcEEEEEeccccch---hhhccccccCCC
Confidence 99999999999873 3444443 23577777765 57888999999999999876531 111112244556
Q ss_pred eEEEeccCCCE----EEEEeCCCeEEEEECCCCC---eeeeeccCc-------------cEEEEeecCCCCCceEEEEEc
Q 009203 378 MGVAGMQQKQI----VLSAGADKRIIGFDAGVGR---ADFKHQIES-------------KCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 378 ~~l~~s~~~~~----l~~~~~dg~i~iwd~~~~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~ 437 (540)
.++.+.+++.. +++++.||.|++||++... ......... .+.++.|+|++ .+|++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~s~~ 292 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH---GTLATVG 292 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT---CCEEEEE
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC---CEEEEEc
Confidence 66666555544 9999999999999999873 233333222 58899999987 6899999
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.||.|++||+.++.... .+.+|...|++++|+|+|++|++++.|+..+.|++-.
T Consensus 293 ~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 293 SDGRFSFWDKDARTKLK-------TSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp TTSCEEEEETTTTEEEE-------ECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred cCCeEEEEECCCCcEEE-------EecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99999999999876533 4567889999999999999999999998666665543
No 115
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-30 Score=255.67 Aligned_cols=253 Identities=17% Similarity=0.204 Sum_probs=204.9
Q ss_pred eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhcc
Q 009203 148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSS 220 (540)
Q Consensus 148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~ 220 (540)
...+.+|...|.++++.|... .+++++.|+.|++|+.. ..+.
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~-------------------------------~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 52 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGK-------------------------------RLATCSSDKTIKIFEVEGETHKLIDTLT 52 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSS-------------------------------EEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred cEEecCCcccEEEEEEcCCCC-------------------------------EEEEEECCCcEEEEecCCCcceeeeEec
Confidence 345678999999999998743 57788889999999764 3578
Q ss_pred cccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeec
Q 009203 221 LHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTA 295 (540)
Q Consensus 221 ~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~ 295 (540)
+|.+.|++++|+|+ ++.+|++|+.||.|++||+.+++ ....+ .+|...|.+++|+|+ +.+|+++
T Consensus 53 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~~~--- 121 (379)
T 3jrp_A 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH--------AVHSASVNSVQWAPHEYGPLLLVA--- 121 (379)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE--------CCCSSCEEEEEECCGGGCSEEEEE---
T ss_pred CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee--------cCCCcceEEEEeCCCCCCCEEEEe---
Confidence 99999999999873 27899999999999999999875 22222 478899999999999 9999999
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC------------CCCEEEEEecCCcEEEEecCCCCCcc
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW------------ENPCFATGGSDHAVVLWSERDAEDSW 363 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------------~~~~l~s~~~dg~i~iwd~~~~~~~~ 363 (540)
+.|+.|++||+.++...... .+.. |...|.+++|+|. ++.+|++|+.||.|++||++++....
T Consensus 122 -~~d~~i~v~d~~~~~~~~~~-~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 196 (379)
T 3jrp_A 122 -SSDGKVSVVEFKENGTTSPI-IIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196 (379)
T ss_dssp -ETTSEEEEEECCTTSCCCEE-EEEC---CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE
T ss_pred -cCCCcEEEEecCCCCceeeE-EecC---CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce
Confidence 99999999999876432222 3332 5678999999995 48999999999999999998775422
Q ss_pred ccceeecccCCcceeEEEeccC---CCEEEEEeCCCeEEEEECCCCCee---e---eeccCccEEEEeecCCCCCceEEE
Q 009203 364 KPKALHRNLHSSAVMGVAGMQQ---KQIVLSAGADKRIIGFDAGVGRAD---F---KHQIESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 364 ~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~l~ 434 (540)
.. .....+|...|.+++|+|+ +.+|++++.||.|++||++++... . .......+.++.|+|++ .+|+
T Consensus 197 ~~-~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~ 272 (379)
T 3jrp_A 197 VL-ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG---NVLA 272 (379)
T ss_dssp EE-EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS---CCEE
T ss_pred ee-EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC---CEEE
Confidence 11 1223568999999999999 899999999999999999986421 1 12356778999999988 6899
Q ss_pred EEcCCCeEEEEECCCCc
Q 009203 435 TGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~ 451 (540)
+++.||.|++||+....
T Consensus 273 ~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 273 LSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEESSSSEEEEEEEETT
T ss_pred EecCCCcEEEEeCCCCC
Confidence 99999999999998654
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=2.2e-29 Score=247.76 Aligned_cols=300 Identities=11% Similarity=0.086 Sum_probs=225.3
Q ss_pred eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcE-EEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQL-FVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~-l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
.+.+++.|+.|++|+.. ..+.+|. .+.+++|+|+ +.+ +++++.|+.|++||+.+++....+. .+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~~~~~--------~~ 73 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVP--------AG 73 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEE--------CS
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCC-CCEEEEECCCCCeEEEEECCCCeEEEEEE--------CC
Confidence 46678889999999765 3355564 5899999997 665 4788899999999999887655552 22
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEE-EEEecCCcEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDHAVV 352 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~ 352 (540)
..+.+++|+|++++|+++ ++.++.|++||+.++ ..+..+.. ...+.+++|+| +++.| ++++.|+.|+
T Consensus 74 -~~v~~~~~spdg~~l~~~---~~~~~~v~v~d~~~~---~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~v~ 141 (391)
T 1l0q_A 74 -SSPQGVAVSPDGKQVYVT---NMASSTLSVIDTTSN---TVAGTVKT----GKSPLGLALSP-DGKKLYVTNNGDKTVS 141 (391)
T ss_dssp -SSEEEEEECTTSSEEEEE---ETTTTEEEEEETTTT---EEEEEEEC----SSSEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred -CCccceEECCCCCEEEEE---ECCCCEEEEEECCCC---eEEEEEeC----CCCcceEEECC-CCCEEEEEeCCCCEEE
Confidence 379999999999987654 167899999999986 44555543 24589999999 88866 7888899999
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEE-EEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV-LSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (540)
+||+.+++. ...+. ....+.+++|+|+++.+ ++++.++.|++||+++++..........+.++.++|++ .
T Consensus 142 ~~d~~~~~~---~~~~~---~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g---~ 212 (391)
T 1l0q_A 142 VINTVTKAV---INTVS---VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG---T 212 (391)
T ss_dssp EEETTTTEE---EEEEE---CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTS---S
T ss_pred EEECCCCcE---EEEEe---cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCC---C
Confidence 999998764 22221 33567999999999887 56778999999999999887777777788899999987 5
Q ss_pred EEEEEc---CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE-EEEeCCCcEEEEeccCCCCcccccc
Q 009203 432 MVQTGT---PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI-TSGSADPVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 432 ~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~sg~~dg~i~iwd~~~~~~~~~~~~ 507 (540)
++++++ .++.|++||+.+++.... +..| ..+.+++|+|+|++| ++++.|+.|++||+.+ ++.+..+
T Consensus 213 ~l~~~~~~~~~~~v~~~d~~~~~~~~~-------~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~--~~~~~~~ 282 (391)
T 1l0q_A 213 KAYVTNVDKYFNTVSMIDTGTNKITAR-------IPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT--NTITATM 282 (391)
T ss_dssp EEEEEEECSSCCEEEEEETTTTEEEEE-------EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEE
T ss_pred EEEEEecCcCCCcEEEEECCCCeEEEE-------EecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCC--CcEEEEE
Confidence 666666 789999999998764332 1223 357899999999987 5778899999999997 6666666
Q ss_pred ccccccee---EEE------------EcCCC----------CEEEEEEcCCcEEEEeC
Q 009203 508 RAHQKRVF---KAV------------WHYSH----------PLLISISSDLNIGLHKI 540 (540)
Q Consensus 508 ~~h~~~i~---~l~------------~s~~~----------~~l~s~~~dg~v~iw~l 540 (540)
..|..+.. .+. |+.+. -.+...+.|..+++|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 283 AVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF 340 (391)
T ss_dssp ECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred ECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEEC
Confidence 55543321 122 22111 23566677889999985
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.8e-31 Score=260.96 Aligned_cols=250 Identities=14% Similarity=0.061 Sum_probs=169.7
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC-------CCCCEEEEE
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP-------WENPCFATG 345 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-------~~~~~l~s~ 345 (540)
|...+....+.+++.+|+++ +.|++|++||+.++.. .....+....+|.+.|++++|+| .++++|++|
T Consensus 88 ~~~~~~~~~~~~~~~~las~----~~d~~v~lw~~~~~~~-~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACV----CQDNTVRLIITKNETI-ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ---------CCEEEEEEEEE----ETTSCEEEEEEETTEE-EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred cCCCcceeecCCCCCEEEEE----eCCCcEEEEECCCCcc-ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence 44444555566677889999 9999999999987622 12233444456889999999986 267899999
Q ss_pred ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeee------------
Q 009203 346 GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKH------------ 412 (540)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~------------ 412 (540)
+.|++|+|||+.++.. ......|...|.+++|+|++ .+|++++.||+|++||+++++.....
T Consensus 163 s~D~tv~~Wd~~~~~~-----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~ 237 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGP-----ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL 237 (393)
T ss_dssp ETTSEEEEEEEETTEE-----EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE
T ss_pred ECCCeEEEEECCCCce-----eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE
Confidence 9999999999987653 22234588999999999987 47999999999999999887653211
Q ss_pred --------------ccCccEEEEeec-CCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc------------cccCc
Q 009203 413 --------------QIESKCMSVLPN-PCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK------------QESSE 465 (540)
Q Consensus 413 --------------~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------------~~~~~ 465 (540)
.....+.++.|. +++ ..+++++.|+++++||+............. .....
T Consensus 238 s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg---~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 238 TLNTLPLVNTCHSSGIASSLANVRWIGSDG---SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp EEESGGGC------CCSSSCSEEEEETTTT---CEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred ecccccceeeeecccccccceeeeeecCCC---CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 112334455655 444 689999999999999998755322111000 00011
Q ss_pred cccCeEEEEEcC--CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 466 SQSALINQSWSP--DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 466 ~~~~v~~~~~sp--~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
+. ......|+| ++.++++|+.||.|++||+.+ +.....+..|..+|++++|+|||++||+++.|| +.+|+
T Consensus 315 ~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~--~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 315 FP-SLLGACPHPRYMDYFATAHSQHGLIQLINTYE--KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp SC-CSSCCEECSSCTTEEEEEETTTTEEEEEETTC--TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred cC-cceeEEEccCCCCEEEEEECCCCEEEEEECCC--CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 11 122233444 445677888999999999997 667777788999999999999999999998776 55554
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.7e-29 Score=246.09 Aligned_cols=265 Identities=9% Similarity=0.071 Sum_probs=212.4
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeE-EEEeecCCCCCeEEEEecCCCCCce
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSL-FSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
+.++++++.|+.|++||+.+++....+. +| ..+.+++|+|+|++| +++ +.++.|++||+.++ +
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~--------~~-~~~~~~~~s~dg~~l~~~~----~~d~~i~v~d~~~~---~ 65 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIP--------VG-SNPMGAVISPDGTKVYVAN----AHSNDVSIIDTATN---N 65 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEE--------CS-SSEEEEEECTTSSEEEEEE----GGGTEEEEEETTTT---E
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEee--------cC-CCcceEEECCCCCEEEEEC----CCCCeEEEEECCCC---e
Confidence 4578999999999999999887665552 33 348999999999977 565 78999999999876 4
Q ss_pred eEEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE-EEE
Q 009203 315 CVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV-LSA 392 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~ 392 (540)
.+..+.. ...+.+++|+| ++++|+ +++.++.|++||+.+++. ...+ .+...+.+++|+|+|+.+ +++
T Consensus 66 ~~~~~~~----~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~---~~~~---~~~~~~~~~~~s~dg~~l~~~~ 134 (391)
T 1l0q_A 66 VIATVPA----GSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTV---AGTV---KTGKSPLGLALSPDGKKLYVTN 134 (391)
T ss_dssp EEEEEEC----SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE---EEEE---ECSSSEEEEEECTTSSEEEEEE
T ss_pred EEEEEEC----CCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeE---EEEE---eCCCCcceEEECCCCCEEEEEe
Confidence 4555543 23799999999 888775 555679999999998864 2222 244578999999999977 678
Q ss_pred eCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE
Q 009203 393 GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN 472 (540)
Q Consensus 393 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~ 472 (540)
+.++.|++||+.+++.+........+..+.|+|++. .++++++.++.|++||+.++...... .+...+.+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~--------~~~~~~~~ 204 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT--KVYVANFDSMSISVIDTVTNSVIDTV--------KVEAAPSG 204 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEE--------ECSSEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCC--EEEEEeCCCCEEEEEECCCCeEEEEE--------ecCCCccc
Confidence 889999999999998887777777788999999873 24478889999999999987643221 23457899
Q ss_pred EEEcCCCCEEEEEe---CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE-EEEEcCCcEEEEeC
Q 009203 473 QSWSPDGLYITSGS---ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL-ISISSDLNIGLHKI 540 (540)
Q Consensus 473 ~~~sp~g~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l-~s~~~dg~v~iw~l 540 (540)
++|+|+|++|++++ .++.|++||+.+ ++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGT--NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTT--TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCC--CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 99999999999887 689999999997 66777777665 47899999999877 67788999999985
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=252.25 Aligned_cols=245 Identities=11% Similarity=0.044 Sum_probs=196.3
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC--------------------------------
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK-------------------------------- 322 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------------------------- 322 (540)
.++.+++|+++|++|+++ .++.|++||+.++.....+..+...
T Consensus 5 ~p~~~v~~s~dg~~l~~~-----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-----IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-----ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-----eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 468899999999977765 5789999999887511122222210
Q ss_pred -------------------CCcccceeEEEEeCCCCCEE-EEEecCCcEEEEecC--CCCCccccceeecccCCcceeEE
Q 009203 323 -------------------PHVKGIINSIIFLPWENPCF-ATGGSDHAVVLWSER--DAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 323 -------------------~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
+.|.+.|.+++|+| ++.+| ++|+.||.|++||+. ++.. ...+....|...|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNV---LKLRKRFCFSKRPNAI 155 (450)
T ss_dssp --------------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSC---EEEEEEEECSSCEEEE
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCce---eeeeecccCCCCceEE
Confidence 12344799999999 88886 899999999999999 6664 3333323577899999
Q ss_pred EeccCCCEEEEEeCCCeEEEEECCCCCeee-----eeccCccEEEEeecCC---CCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 381 AGMQQKQIVLSAGADKRIIGFDAGVGRADF-----KHQIESKCMSVLPNPC---DFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
+|+|++.+|++++.+|.|++|++.++.... ...+...+.++.|+|+ + .+|++|+.|+.|++||+.++..
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~---~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH---QFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC---EEEEEEETTSCEEEEEESCTTC
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC---cEEEEEcCCCcEEEEECCCCce
Confidence 999999999999999999999998876542 2345578899999998 5 7999999999999999988765
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-----------------------
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA----------------------- 509 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----------------------- 509 (540)
... ...+|...|++++|+ ++++|++|+.|+.|++||+.+ ++++..+..
T Consensus 233 ~~~------~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 233 VDK------WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT--GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp EEE------ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT--CCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred eee------eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC--CcEeeeecchhhhhhhhhhccccccccccccc
Confidence 432 235788999999999 999999999999999999997 565555542
Q ss_pred --cccceeEEEEcCCCCEEEEEE-cCCcEEEEeC
Q 009203 510 --HQKRVFKAVWHYSHPLLISIS-SDLNIGLHKI 540 (540)
Q Consensus 510 --h~~~i~~l~~s~~~~~l~s~~-~dg~v~iw~l 540 (540)
+...|.+++|+|++++|++++ .|+.|+||++
T Consensus 304 ~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 304 DIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp -CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 234689999999999999999 8999999985
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.3e-29 Score=243.76 Aligned_cols=239 Identities=11% Similarity=0.098 Sum_probs=178.6
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEE-EEEecCC
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDH 349 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg 349 (540)
.+|...|++++|+|||++|++| +.++ +++||+.++ ........ ..+..+++.+ +++.+ ++++.|+
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g----~~~~-~~iw~~~~~---~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILS----TLKS-FEIYNVHPV---AHIMSQEM-----RHLSKVRMLH-RTNYVAFVTGVKE 81 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEE----CSSE-EEEEEETTE---EEEEEEEC-----SCCCEEEECT-TSSEEEEECSSTT
T ss_pred ccCCCceEEEEECCCCCEEEEE----cCCE-EEEEecCCc---ceeeeeec-----CCeEEEEEcC-CCCEEEEEECCcc
Confidence 5789999999999999999998 6664 789998864 22322221 2377888988 66666 6678889
Q ss_pred cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC-CeeeeeccCccEEEEeecCCCC
Q 009203 350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG-RADFKHQIESKCMSVLPNPCDF 428 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~ 428 (540)
+|++||+.+++.+ ..+ .+...|.+++|+++. ++++ .|+.|++||+.++ +.+..... ....+++++ .
T Consensus 82 ~v~iWd~~~~~~~---~~~---~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~-~- 148 (355)
T 3vu4_A 82 VVHIWDDVKKQDV---SRI---KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN-G- 148 (355)
T ss_dssp EEEEEETTTTEEE---EEE---ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET-T-
T ss_pred EEEEEECCCCcEE---EEE---ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc-c-
Confidence 9999999998752 222 266789999998753 4443 4789999999987 55544433 233344455 2
Q ss_pred CceEEEE-EcCCCeEEEEECCCCcceee--------eecc-ccccCccccCeEEEEEcCCCCEEEEEeCCCc-EEEEecc
Q 009203 429 NLFMVQT-GTPGRQLRLYDIRLRQTEIH--------AFGW-KQESSESQSALINQSWSPDGLYITSGSADPV-IHLFDIR 497 (540)
Q Consensus 429 ~~~~l~~-~~~dg~v~i~d~~~~~~~~~--------~~~~-~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~-i~iwd~~ 497 (540)
.++++ |+.+|.|++||+.++..... .+.. ...+.+|...|++++|+|+|++|++|+.||+ |+|||+.
T Consensus 149 --~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 149 --LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp --EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred --EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 23333 78999999999997541100 0000 2245789999999999999999999999998 9999999
Q ss_pred CCCCccccccc-c-cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 498 YSANKPSQSIR-A-HQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 498 ~~~~~~~~~~~-~-h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+ ++++..+. + |...|++++|+|+|++|++++.|++|+|||+
T Consensus 227 ~--~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 227 D--GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp T--CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred C--CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 8 77888887 5 9999999999999999999999999999986
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-30 Score=274.02 Aligned_cols=252 Identities=17% Similarity=0.207 Sum_probs=201.3
Q ss_pred eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhccc
Q 009203 149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSSL 221 (540)
Q Consensus 149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~~ 221 (540)
..+.+|...|.++.+.|... .+++++.|++|++|+.. ..+.+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-------------------------------~latg~~dg~I~vwd~~~~~~~~~~~l~~ 51 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-------------------------------RLATCSSDKTIKIFEVEGETHKLIDTLTG 51 (753)
T ss_dssp -----CCCCEEEECCCSSSC-------------------------------CEEEEETTTEEEEEEEETTEEEEEEEECC
T ss_pred eecccCcceeEEEEECCCCC-------------------------------eEEEEECCCcEEEEecCCCCCccceeccC
Confidence 34578999999999988742 47788889999999753 45789
Q ss_pred ccCceEEEEEecCC-CcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeecC
Q 009203 222 HKRKLRSLSLNPVN-EQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTAD 296 (540)
Q Consensus 222 h~~~V~~l~~spd~-~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~~ 296 (540)
|.+.|++++|+|+. +.+|++|+.||.|++||+.++. ....+ .+|...|.+++|+|+ +.+|+++
T Consensus 52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~--------~~h~~~V~~v~~sp~~~~~~l~sg---- 119 (753)
T 3jro_A 52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH--------AVHSASVNSVQWAPHEYGPLLLVA---- 119 (753)
T ss_dssp CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE--------CCCSSCEEEEEECCGGGCSEEEEE----
T ss_pred CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc--------cCCCCCeEEEEECCCCCCCEEEEE----
Confidence 99999999999842 8899999999999999998865 22222 579999999999999 9999999
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC------------CCCEEEEEecCCcEEEEecCCCCCccc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW------------ENPCFATGGSDHAVVLWSERDAEDSWK 364 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------------~~~~l~s~~~dg~i~iwd~~~~~~~~~ 364 (540)
+.||.|++||+.++...... .+.. |...|.+++|+|. ++.+|++|+.||.|++||++++.....
T Consensus 120 s~dg~I~vwdl~~~~~~~~~-~~~~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~ 195 (753)
T 3jro_A 120 SSDGKVSVVEFKENGTTSPI-IIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (753)
T ss_dssp ETTSEEEEEECCSSSCCCCE-EEEC---CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE
T ss_pred eCCCcEEEEEeecCCCccee-Eeec---CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce
Confidence 99999999999876332222 2332 5678999999994 488999999999999999988753221
Q ss_pred cceeecccCCcceeEEEeccC---CCEEEEEeCCCeEEEEECCCCCe------eeeeccCccEEEEeecCCCCCceEEEE
Q 009203 365 PKALHRNLHSSAVMGVAGMQQ---KQIVLSAGADKRIIGFDAGVGRA------DFKHQIESKCMSVLPNPCDFNLFMVQT 435 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 435 (540)
.. ....+|...|++++|+|+ +.+|++++.||.|++||++++.. .........+.++.|+|++ .++++
T Consensus 196 ~~-~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~s 271 (753)
T 3jro_A 196 LE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG---NVLAL 271 (753)
T ss_dssp EE-EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT---CCEEE
T ss_pred ee-eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC---CEEEE
Confidence 11 223569999999999999 89999999999999999998642 1223355678899999987 68999
Q ss_pred EcCCCeEEEEECCCCc
Q 009203 436 GTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 436 ~~~dg~v~i~d~~~~~ 451 (540)
|+.||.|++||+....
T Consensus 272 ~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 272 SGGDNKVTLWKENLEG 287 (753)
T ss_dssp ECSSSCEECCBCCSSS
T ss_pred EcCCCEEEEEecCCCC
Confidence 9999999999998654
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.7e-30 Score=252.22 Aligned_cols=255 Identities=11% Similarity=0.078 Sum_probs=175.3
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--------CCCeEEE
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--------QGNSLFS 291 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--------~~~~l~s 291 (540)
..|...+....+.+ .+.+|++|+.|++|+|||+..+........ ....||.+.|++++|+| |+++|++
T Consensus 86 ~~~~~~~~~~~~~~-~~~~las~~~d~~v~lw~~~~~~~~~~~~~---~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las 161 (393)
T 4gq1_A 86 NLHDGDGNVNSSPV-YSLFLACVCQDNTVRLIITKNETIITQHVL---GGKSGHHNFVNDIDIADVYSADNRLAEQVIAS 161 (393)
T ss_dssp C----------CCE-EEEEEEEEETTSCEEEEEEETTEEEEEEEE---CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEE
T ss_pred cccCCCcceeecCC-CCCEEEEEeCCCcEEEEECCCCccceeeee---cccCCCCCceEEEEEccccccccCCCCCEEEE
Confidence 45556666666666 488999999999999999988764332211 11269999999999998 7899999
Q ss_pred EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc-----
Q 009203 292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK----- 366 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 366 (540)
+ +.|++|+|||+.++ ..+..+.. |...|.+++|+|.++.+|++|+.|++|++||+++++......
T Consensus 162 ~----s~D~tv~~Wd~~~~---~~~~~~~~---~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~ 231 (393)
T 4gq1_A 162 V----GDDCTLIIWRLTDE---GPILAGYP---LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV 231 (393)
T ss_dssp E----ETTSEEEEEEEETT---EEEEEEEE---CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C
T ss_pred E----ECCCeEEEEECCCC---ceeeeecC---CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence 9 99999999999875 23333332 457799999999444689999999999999999876422111
Q ss_pred ---------------eeecccCCcceeEEEec-cCCCEEEEEeCCCeEEEEECCCCCeeeeecc----------------
Q 009203 367 ---------------ALHRNLHSSAVMGVAGM-QQKQIVLSAGADKRIIGFDAGVGRADFKHQI---------------- 414 (540)
Q Consensus 367 ---------------~~~~~~~~~~v~~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------- 414 (540)
.....+|...+.++.|+ +++..|++++.|+.+++||+..+........
T Consensus 232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (393)
T 4gq1_A 232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG 311 (393)
T ss_dssp SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence 01124578889999986 7999999999999999999987654322110
Q ss_pred ---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcE
Q 009203 415 ---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVI 491 (540)
Q Consensus 415 ---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i 491 (540)
........+.|.. ...++++|+.||.|++||+.++..... ..+|..+|.+++|+|||++||+++.+| +
T Consensus 312 ~~~~~~~~~~~~~~~~-~~~~~~sgs~Dg~V~lwd~~~~~~~~~-------~~~~~~~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 312 ISLFPSLLGACPHPRY-MDYFATAHSQHGLIQLINTYEKDSNSI-------PIQLGMPIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp ECSSCCSSCCEECSSC-TTEEEEEETTTTEEEEEETTCTTCCEE-------EEECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred ccccCcceeEEEccCC-CCEEEEEECCCCEEEEEECCCCcEEEE-------ecCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence 1111122333322 226788999999999999998876443 245778999999999999999998777 6
Q ss_pred EEEecc
Q 009203 492 HLFDIR 497 (540)
Q Consensus 492 ~iwd~~ 497 (540)
.+|.+.
T Consensus 383 ~lvrL~ 388 (393)
T 4gq1_A 383 LLTRLM 388 (393)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 666654
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5.9e-29 Score=229.91 Aligned_cols=284 Identities=10% Similarity=0.058 Sum_probs=186.0
Q ss_pred eEEEEEecCCC--cEEEEEeCCceEEEEEcCCC---CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 226 LRSLSLNPVNE--QLFVTSALDGVIRLWQLQSR---GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 226 V~~l~~spd~~--~~l~tg~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
+.++.|-.-+. ..+++++. ..|++|+..+. +...++ .+|+.+|..+.|.||-.-|+...- +.=.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~--~~~~ 110 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW--------HFAEVPVLQIVPVPDVYNLVCVAL--GNLE 110 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE--------ECCSSCEEEECCCTTCCSCEEEEE--CSSS
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE--------eccCceeEEEEEcCcccceeeeee--cccc
Confidence 56777755222 15667764 58999999987 334444 478888999999997553333200 1111
Q ss_pred eEEEEecCCCCC--ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe--cCCcEEEEecCC-CCCccccceeecccCCc
Q 009203 301 QISVLNLNKTKG--RACVTFLDDKPHVKGIINSIIFLPWENPCFATGG--SDHAVVLWSERD-AEDSWKPKALHRNLHSS 375 (540)
Q Consensus 301 ~i~vwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~ 375 (540)
.-.++-+.-... ........+ .|...|.++ + +++++.+++ .|+.|++|++.. ++. .....+|..
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~--g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~-----~~s~~~~~~ 179 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKS--GNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGG-----KENQFLMPP 179 (356)
T ss_dssp EEEEEEECC------CCEEEEEE--EEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCE-----EEEEEECCC
T ss_pred ccceEEEEECCCccccccEEEeC--CCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCce-----eeeeccCCC
Confidence 112222211110 000111111 122234443 4 666666644 589999999954 542 122245888
Q ss_pred ceeEEEecc---CCCEEEEEeCCCeEEEEECCCCCeeeeecc----CccEEEEeecCCCCCceEE------------EEE
Q 009203 376 AVMGVAGMQ---QKQIVLSAGADKRIIGFDAGVGRADFKHQI----ESKCMSVLPNPCDFNLFMV------------QTG 436 (540)
Q Consensus 376 ~v~~l~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l------------~~~ 436 (540)
.++.++|++ ++..|++++.|++|++||+.+++++..+.. ...+.+++|+|++ .++ ++|
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG---~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG---LLFIVLSHPCAKESESLR 256 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT---EEEEEEC-----------
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC---CEEEEeccCCCcceeecc
Confidence 999999999 789999999999999999999998777542 2345567788876 443 678
Q ss_pred cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccccee-
Q 009203 437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF- 515 (540)
Q Consensus 437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~- 515 (540)
+.|++|++||..++....... +. ...+|...+.+..++ +.++++|+.|++|+|||+.+ ++++.++.+|...+.
T Consensus 257 s~D~tIklWd~~tgk~l~v~~-~~-~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t--Gk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVML-YC-LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL--GQCTALLPPVSDQHWS 330 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEE-EC-CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT--CSEEEEECCC--CCCC
T ss_pred CCCcEEEEEECCCCEEEEEEE-ee-ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC--CcEEEEecCCCCCeEE
Confidence 899999999999876532211 00 124566555555554 88999999999999999998 889999999987665
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 516 KAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 516 ~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.++|+|||++|++|+.|++|+|||+
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 5899999999999999999999985
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.6e-29 Score=240.14 Aligned_cols=258 Identities=7% Similarity=0.008 Sum_probs=197.4
Q ss_pred eEEecCCCCeEEEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC---------CCcceeecccc
Q 009203 200 LVRTSASPATIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR---------GSGASLLSTTD 267 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~---------~~~~~~~~~~~ 267 (540)
.+++++.|++|++|+.. .+..-....|.++.|+|+ +++|+.|++|++|+.... +.+....
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~---- 121 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE---- 121 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE----
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEee----
Confidence 58889999999999764 222222577889999984 999999999999987632 2111111
Q ss_pred cCCCCCCCCceeEEEec--CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203 268 CLSPKHRRWPEDIAWHP--QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATG 345 (540)
Q Consensus 268 ~~~~~h~~~V~~~~~~~--~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 345 (540)
.+|...|.+++|+| ++++|+++ +.|+.|++||+.++ ........ ++...|.+++|+| ++.+|++|
T Consensus 122 ---~~~~~~v~~~~~~~~~~~~~l~s~----s~dg~i~~wd~~~~---~~~~~~~~--~~~~~i~~~~~~p-dg~~lasg 188 (343)
T 3lrv_A 122 ---VDSANEIIYMYGHNEVNTEYFIWA----DNRGTIGFQSYEDD---SQYIVHSA--KSDVEYSSGVLHK-DSLLLALY 188 (343)
T ss_dssp ---CCCSSCEEEEECCC---CCEEEEE----ETTCCEEEEESSSS---CEEEEECC--CSSCCCCEEEECT-TSCEEEEE
T ss_pred ---cCCCCCEEEEEcCCCCCCCEEEEE----eCCCcEEEEECCCC---cEEEEEec--CCCCceEEEEECC-CCCEEEEE
Confidence 36778899999999 99999999 99999999999976 33444433 3455799999999 99999999
Q ss_pred ecCCcEEEEecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec------cCccE
Q 009203 346 GSDHAVVLWSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ------IESKC 418 (540)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~ 418 (540)
+.||.|++||+++++.. ...... |...|++++|+|+|.+|++++. +.|++||+++++.+.... .....
T Consensus 189 ~~dg~i~iwd~~~~~~~----~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQA----SSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGT 263 (343)
T ss_dssp CTTSCEEEEESSCTTSC----CEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CC
T ss_pred cCCCEEEEEECCCCCCC----ccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccc
Confidence 99999999999998752 112234 8999999999999999999994 599999999887654322 11111
Q ss_pred EEEeecCCCCCceEEEEEcC-CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC---CCCEEEEEeCCCcEEEE
Q 009203 419 MSVLPNPCDFNLFMVQTGTP-GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP---DGLYITSGSADPVIHLF 494 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~sg~~dg~i~iw 494 (540)
.+++|+|++ .+|++++. |+.|++|++......... .++..++|++ ++..|++++.||.+.++
T Consensus 264 ~~~~~~~~g---~~l~~~s~~d~~i~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 264 VTYDIDDSG---KNMIAYSNESNSLTIYKFDKKTKNWTK-----------DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEECTTS---SEEEEEETTTTEEEEEEECTTTCSEEE-----------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred eEEEECCCC---CEEEEecCCCCcEEEEEEcccccceEe-----------cCceeEecCccccccceeEEEecCCceEEE
Confidence 468999987 68999888 999999999765532211 4577888988 88999999999999888
Q ss_pred ecc
Q 009203 495 DIR 497 (540)
Q Consensus 495 d~~ 497 (540)
-..
T Consensus 330 ~~~ 332 (343)
T 3lrv_A 330 LKT 332 (343)
T ss_dssp EEC
T ss_pred Eec
Confidence 655
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.8e-27 Score=240.89 Aligned_cols=313 Identities=9% Similarity=0.034 Sum_probs=228.2
Q ss_pred eEEecCCCCeEEEeccc-----hhcc-cccCceEEEEEecCCCcEEEEEeCCceEEEEEc--CCCCCcceeecccccCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSS-LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQL--QSRGSGASLLSTTDCLSP 271 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~-~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~--~~~~~~~~~~~~~~~~~~ 271 (540)
.+++++.|++|.+|+.. ..+. +|. +.+++|+|| |++|++++.|++|++||+ .+++.+.++.
T Consensus 151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-------- 219 (543)
T 1nir_A 151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK-------- 219 (543)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE--------
T ss_pred EEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEe--------
Confidence 45667789999999765 2344 443 899999996 999999999999999999 6666555442
Q ss_pred CCCCCceeEEEec----CCCeEEEEeecCC-CCCeEEEEecCCCCCceeEEeecCCC--------CcccceeEEEEeCCC
Q 009203 272 KHRRWPEDIAWHP----QGNSLFSAHTADS-GDSQISVLNLNKTKGRACVTFLDDKP--------HVKGIINSIIFLPWE 338 (540)
Q Consensus 272 ~h~~~V~~~~~~~----~~~~l~s~~~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~p~~ 338 (540)
+...+..++|+| +|++|+++ + .+++|.+||..++ +++..+...+ +....+.++.++|.+
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~----~~~~~~v~v~D~~t~---~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAG----AYWPPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEE----EEESSEEEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEE----EccCCeEEEEecccc---ccceeecccCcccCccccccCCceEEEEECCCC
Confidence 234578999999 99999988 5 5899999999886 4455444311 122368999999945
Q ss_pred CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeeeecc---
Q 009203 339 NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFKHQI--- 414 (540)
Q Consensus 339 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~--- 414 (540)
+.++++...++.|.+||+.+.+.. . .....+...+.+++|+|+|+++++++ .+++|.+||+.+++++.....
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l---~-~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ 367 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNL---T-VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 367 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSC---E-EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CEEEEEECCCCeEEEEEecCCCcc---e-eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence 556677788999999999887642 2 11122566788999999999877654 588999999999988665442
Q ss_pred --CccEEEEeecCCCCCceEEEEEc-CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-----
Q 009203 415 --ESKCMSVLPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS----- 486 (540)
Q Consensus 415 --~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~----- 486 (540)
......+ ++|++. .+++++. .|++|.+||+.+.......+...+.+..|...+..++|+|+|++|++++
T Consensus 368 ph~g~g~~~-~~p~~g--~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 368 PHPGRGANF-VHPKYG--PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp BCCTTCEEE-EETTTE--EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCCCccc-CCCCCc--cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence 1223333 456531 5677775 6899999999873211111112235566777889999999999999987
Q ss_pred --CCCcEEEEeccCCCCccc-ccc--------cccccceeEEEEcCCCCEEEEEE-----cCCcEEEEeC
Q 009203 487 --ADPVIHLFDIRYSANKPS-QSI--------RAHQKRVFKAVWHYSHPLLISIS-----SDLNIGLHKI 540 (540)
Q Consensus 487 --~dg~i~iwd~~~~~~~~~-~~~--------~~h~~~i~~l~~s~~~~~l~s~~-----~dg~v~iw~l 540 (540)
.+++|.|||+.+. +.. ..+ ..+...+..+.|+|+|+.|+++. .|+.|.|||.
T Consensus 445 ~~~~~~v~v~d~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 445 ARISQSVAVFDLKNL--DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp HHHHTCEEEEETTCT--TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred cccCceEEEEECCCC--CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 2679999999984 333 332 35567899999999999877663 4799999984
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=9.9e-27 Score=232.04 Aligned_cols=262 Identities=10% Similarity=0.105 Sum_probs=209.3
Q ss_pred eEEecCCCCeEEEeccc-----h-----hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC
Q 009203 200 LVRTSASPATIHCHTSN-----H-----VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL 269 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~-----~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~ 269 (540)
.++.+..++.|++|+.. . .+.+|.+.|++++|+|+ +.++++++.|+.|++||+.+++....+
T Consensus 136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~~~~~~~~~------- 207 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLKTLAYKATV------- 207 (433)
T ss_dssp EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETTTCCEEEEE-------
T ss_pred EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECCCceEEEEE-------
Confidence 35566678889999764 2 35689999999999995 999999999999999999987766555
Q ss_pred CCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe---
Q 009203 270 SPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG--- 346 (540)
Q Consensus 270 ~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--- 346 (540)
..|...+.+++|+|+++.++++ ++.++.|++||+.++ ..+..+.. ...+.+++|+| ++.++++++
T Consensus 208 -~~~~~~~~~~~~~~~~~~l~~~---~~~~~~i~~~d~~~~---~~~~~~~~----~~~~~~~~~~~-~g~~l~~~~~~~ 275 (433)
T 3bws_A 208 -DLTGKWSKILLYDPIRDLVYCS---NWISEDISVIDRKTK---LEIRKTDK----IGLPRGLLLSK-DGKELYIAQFSA 275 (433)
T ss_dssp -ECSSSSEEEEEEETTTTEEEEE---ETTTTEEEEEETTTT---EEEEECCC----CSEEEEEEECT-TSSEEEEEEEES
T ss_pred -cCCCCCeeEEEEcCCCCEEEEE---ecCCCcEEEEECCCC---cEEEEecC----CCCceEEEEcC-CCCEEEEEECCC
Confidence 3677889999999999988544 168999999999876 44555543 34599999999 998888887
Q ss_pred -----cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE-EEEeCCCeEEEEECCCCCeeeeeccCccEEE
Q 009203 347 -----SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV-LSAGADKRIIGFDAGVGRADFKHQIESKCMS 420 (540)
Q Consensus 347 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 420 (540)
.|+.|++||+.+++. ... ..|...+.+++|+|+++.+ ++++.|+.|++||+.+++.+........+.+
T Consensus 276 ~~~~~~dg~i~~~d~~~~~~----~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 349 (433)
T 3bws_A 276 SNQESGGGRLGIYSMDKEKL----IDT--IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNT 349 (433)
T ss_dssp CTTCSCCEEEEEEETTTTEE----EEE--EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred CccccCCCeEEEEECCCCcE----Eee--ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCe
Confidence 488999999998764 111 2356688999999999755 5668899999999999888777777788899
Q ss_pred EeecCCCCCceEEEEEcC---------------CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE
Q 009203 421 VLPNPCDFNLFMVQTGTP---------------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG 485 (540)
Q Consensus 421 ~~~~~~~~~~~~l~~~~~---------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 485 (540)
++++|++ .++++++. ||.|++||+.+++..... . +...+.+++|+|+|++|+++
T Consensus 350 ~~~s~dg---~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~-------~-~~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 350 IALSPDG---KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW-------E-AGNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp EEECTTS---SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE-------E-CSSSEEEEEECTTSCEEEEE
T ss_pred EEEcCCC---CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe-------c-CCCCCceEEEcCCCCEEEEE
Confidence 9999987 56666655 579999999887643322 1 23478999999999999887
Q ss_pred eC-CCcEEEEeccC
Q 009203 486 SA-DPVIHLFDIRY 498 (540)
Q Consensus 486 ~~-dg~i~iwd~~~ 498 (540)
+. |+.|++|+++.
T Consensus 419 ~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 419 DFLDHQIRVYRRDG 432 (433)
T ss_dssp ETTTTEEEEEEETT
T ss_pred ECCCCeEEEEEecC
Confidence 75 99999999873
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.5e-27 Score=220.48 Aligned_cols=259 Identities=10% Similarity=0.030 Sum_probs=161.5
Q ss_pred CCeEEEeccc--------hhcccccCceEEEEEecCCCcEEEEEeCCceE-EEEEcCCCCC----cceeecccccCCCCC
Q 009203 207 PATIHCHTSN--------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVI-RLWQLQSRGS----GASLLSTTDCLSPKH 273 (540)
Q Consensus 207 d~~i~~~~~~--------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v-~iw~~~~~~~----~~~~~~~~~~~~~~h 273 (540)
..+|++|+.. +.+.+|+.+|..+.|.||..++++.+-.+-.+ .++-+.-... ...+.. .+|
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s------~g~ 135 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK------SGN 135 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE------EEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe------CCC
Confidence 3566777332 45677777777777777655555554332211 1222211111 111111 123
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC--CCCCEEEEEecCCcE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP--WENPCFATGGSDHAV 351 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 351 (540)
...|.++ ++|+++.++. .+.|+.|++|++... .+.+..+.. |...+..++|+| .++.+|++|+.|++|
T Consensus 136 ~~~v~~l---~~g~lv~ss~--~g~d~~V~~~~~s~d--G~~~~s~~~---~~~~v~~l~fs~~~g~~~~LaSgS~D~TI 205 (356)
T 2w18_A 136 IKAVLGL---TKRRLVSSSG--TLSDQQVEVMTFAED--GGGKENQFL---MPPEETILTFAEVQGMQEALLGTTIMNNI 205 (356)
T ss_dssp EEEEEEE---TTTEEEEEES--SSTTCEEEEEEECTT--SCEEEEEEE---CCCSSCEEEEEEEETSTTEEEEEETTSEE
T ss_pred eEEEEec---CCCcEEEecc--cCCCCcEEEEEECCC--Cceeeeecc---CCCceeeEEeeccCCCCceEEEecCCCcE
Confidence 3333333 4555555540 136999999998542 133333333 345566666665 467999999999999
Q ss_pred EEEecCCCCCccccceeec-ccCCcceeEEEeccCCCEE------------EEEeCCCeEEEEECCCCCeeeeec-----
Q 009203 352 VLWSERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIV------------LSAGADKRIIGFDAGVGRADFKHQ----- 413 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~----- 413 (540)
+|||+.++++ ...+.. ..+...+.+++|+|+|.++ ++|+.|++|++||..+++.+....
T Consensus 206 kIWDl~TGk~---l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~ 282 (356)
T 2w18_A 206 VIWNLKTGQL---LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPP 282 (356)
T ss_dssp EEEETTTCCE---EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCT
T ss_pred EEEECCCCcE---EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccC
Confidence 9999999986 334421 1123467888999999887 567789999999999988754321
Q ss_pred -cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeE-EEEEcCCCCEEEEEeCCCcE
Q 009203 414 -IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI-NQSWSPDGLYITSGSADPVI 491 (540)
Q Consensus 414 -~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~sg~~dg~i 491 (540)
......+..++ + .++++|+.|++|+|||+.+++... ++.+|...+. +++|||||++|++|+.|++|
T Consensus 283 Gh~~~~lsg~~s--g---~~lASgS~DgTIkIWDl~tGk~l~-------tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 283 GQAGRFLEGDVK--D---HCAAAILTSGTIAIWDLLLGQCTA-------LLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp TCCCCEEEEEEE--T---TEEEEEETTSCEEEEETTTCSEEE-------EECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred CCcceeEccccC--C---CEEEEEcCCCcEEEEECCCCcEEE-------EecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 11123333333 1 478999999999999999988544 3456776655 68999999999999999999
Q ss_pred EEEec
Q 009203 492 HLFDI 496 (540)
Q Consensus 492 ~iwd~ 496 (540)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99996
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.3e-26 Score=229.05 Aligned_cols=274 Identities=11% Similarity=0.060 Sum_probs=207.5
Q ss_pred eEEEecc--c-------hhcccccCceEEEEEecC-------------CCcEEEEEeCC------ceEEEEEcCCCCCcc
Q 009203 209 TIHCHTS--N-------HVSSLHKRKLRSLSLNPV-------------NEQLFVTSALD------GVIRLWQLQSRGSGA 260 (540)
Q Consensus 209 ~i~~~~~--~-------~~~~~h~~~V~~l~~spd-------------~~~~l~tg~~d------g~v~iw~~~~~~~~~ 260 (540)
++++|+. . ..+.+|...+..+++++. .+..++.++.+ +.|++||+.. ....
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQF 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCE
Confidence 8999987 3 226788888888887751 03445555443 7999999974 3334
Q ss_pred eeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC---CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC
Q 009203 261 SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD---SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW 337 (540)
Q Consensus 261 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 337 (540)
.+ .+|...|.+++|+|+|+.|+++ +.+ ..|++||+.+++ ... +.. +.+.+.+++|+|
T Consensus 173 ~l--------~~~~~~v~~~~~Spdg~~la~~----s~~~~~~~i~~~d~~tg~---~~~-l~~---~~~~~~~~~~sp- 232 (415)
T 2hqs_A 173 VV--------HRSPQPLMSPAWSPDGSKLAYV----TFESGRSALVIQTLANGA---VRQ-VAS---FPRHNGAPAFSP- 232 (415)
T ss_dssp EE--------EEESSCEEEEEECTTSSEEEEE----ECTTSSCEEEEEETTTCC---EEE-EEC---CSSCEEEEEECT-
T ss_pred EE--------eCCCCcceeeEEcCCCCEEEEE----EecCCCcEEEEEECCCCc---EEE-eec---CCCcccCEEEcC-
Confidence 44 3577889999999999999998 655 499999999763 233 322 356799999999
Q ss_pred CCCEEE-EEecCCc--EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CC--eEEEEECCCCCeeee
Q 009203 338 ENPCFA-TGGSDHA--VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DK--RIIGFDAGVGRADFK 411 (540)
Q Consensus 338 ~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~ 411 (540)
+++.|+ +++.++. |++||+.+++. ..+ ..|...+.+++|+|||+.|++++. ++ .|++||+.+++....
T Consensus 233 dg~~la~~~~~~g~~~i~~~d~~~~~~----~~l--~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l 306 (415)
T 2hqs_A 233 DGSKLAFALSKTGSLNLYVMDLASGQI----RQV--TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI 306 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCE----EEC--CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred CCCEEEEEEecCCCceEEEEECCCCCE----EeC--cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE
Confidence 898777 6666654 99999988763 333 347788999999999999998886 44 688889988775444
Q ss_pred eccCccEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203 412 HQIESKCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD 488 (540)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d 488 (540)
......+.++.|+|++ .+|++++.+ ..|++||+.+++... +..+. .+.+++|+|+|++|++++.+
T Consensus 307 ~~~~~~~~~~~~spdG---~~l~~~~~~~g~~~i~~~d~~~~~~~~--------l~~~~-~~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDG---KFMVMVSSNGGQQHIAKQDLATGGVQV--------LSSTF-LDETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp CCSSSEEEEEEECTTS---SEEEEEEECSSCEEEEEEETTTCCEEE--------CCCSS-SCEEEEECTTSSEEEEEEEE
T ss_pred ecCCCcccCeEECCCC---CEEEEEECcCCceEEEEEECCCCCEEE--------ecCCC-CcCCeEEcCCCCEEEEEEcC
Confidence 4445677889999988 567666553 589999999876421 22333 78999999999999988877
Q ss_pred C---cEEEEeccCCCCcccccccccccceeEEEEcCCCC
Q 009203 489 P---VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP 524 (540)
Q Consensus 489 g---~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~ 524 (540)
+ .|++||+. +.....+..|.+.|.+++|+|...
T Consensus 375 ~~~~~l~~~d~~---g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 GMGSVLNLVSTD---GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTEEEEEEEETT---SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCccEEEEEECC---CCcEEEeeCCCCCCcCCccccccc
Confidence 7 79999987 456778888999999999999754
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=5.9e-27 Score=231.47 Aligned_cols=282 Identities=11% Similarity=0.024 Sum_probs=209.4
Q ss_pred cCceEEEEEecCCCcEEEEEe----CCc----eEEEEEc--CCCCCcceeecccccCCCCCCCCceeEEEec--------
Q 009203 223 KRKLRSLSLNPVNEQLFVTSA----LDG----VIRLWQL--QSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-------- 284 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~----~dg----~v~iw~~--~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-------- 284 (540)
...|...+|.+++..++++|+ .|| .|+|||+ .+++.+..... .+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY------KVNKQWLRYAGHTASDEVFEKL 135 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE------EECGGGHHHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE------EcChhHHHHHHHHHHHHHHHHH
Confidence 357888889887667888886 467 8999999 88775422111 36666777777764
Q ss_pred ------CCCeEEEEeecCCCC---CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC---cEE
Q 009203 285 ------QGNSLFSAHTADSGD---SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH---AVV 352 (540)
Q Consensus 285 ------~~~~l~s~~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~ 352 (540)
.+..++.+... ..+ +.|++||+.... ...+.. |...+.+++|+| +++.|++++.++ .|+
T Consensus 136 ~g~~~~~~~~l~~~s~~-~~~~~~~~i~i~d~~g~~----~~~l~~---~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~ 206 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQT-NGGQFPYELRVSDYDGYN----QFVVHR---SPQPLMSPAWSP-DGSKLAYVTFESGRSALV 206 (415)
T ss_dssp HSSCCCTTCEEEEEEEC-SSSSCCEEEEEEETTSCS----CEEEEE---ESSCEEEEEECT-TSSEEEEEECTTSSCEEE
T ss_pred cCCCCcCCCEEEEEEec-CCCCccceEEEEcCCCCC----CEEEeC---CCCcceeeEEcC-CCCEEEEEEecCCCcEEE
Confidence 25566665221 112 799999998432 233332 457799999999 999999999875 999
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEE-EEeCCC--eEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVL-SAGADK--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN 429 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (540)
+||+.+++. ..+ ..|...+.+++|+|||+.|+ +++.++ .|++||+.+++..........+.++.|+|++
T Consensus 207 ~~d~~tg~~----~~l--~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg-- 278 (415)
T 2hqs_A 207 IQTLANGAV----RQV--ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDS-- 278 (415)
T ss_dssp EEETTTCCE----EEE--ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTS--
T ss_pred EEECCCCcE----EEe--ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCC--
Confidence 999998874 333 34778899999999999887 566555 4999999988875555556778899999988
Q ss_pred ceEEEEEcC-CC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCcc
Q 009203 430 LFMVQTGTP-GR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKP 503 (540)
Q Consensus 430 ~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~ 503 (540)
.+|++++. ++ .|++||+.++.... +..+...+.+++|+|+|++|++++.+ +.|++||+.+ +..
T Consensus 279 -~~l~~~s~~~g~~~i~~~d~~~~~~~~--------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~--~~~ 347 (415)
T 2hqs_A 279 -QNLAFTSDQAGRPQVYKVNINGGAPQR--------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGV 347 (415)
T ss_dssp -SEEEEEECTTSSCEEEEEETTSSCCEE--------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--CCE
T ss_pred -CEEEEEECCCCCcEEEEEECCCCCEEE--------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC--CCE
Confidence 56766665 44 68888988765321 23355678899999999999988764 5899999987 333
Q ss_pred cccccccccceeEEEEcCCCCEEEEEEcCC---cEEEEeC
Q 009203 504 SQSIRAHQKRVFKAVWHYSHPLLISISSDL---NIGLHKI 540 (540)
Q Consensus 504 ~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg---~v~iw~l 540 (540)
..+..|. .+.+++|+|+|++|++++.|+ .|++||+
T Consensus 348 -~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 348 -QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp -EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred -EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 3455554 799999999999999988877 7999985
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=2.3e-24 Score=207.56 Aligned_cols=283 Identities=10% Similarity=0.071 Sum_probs=190.1
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC-CeEEEEecC--CCCC
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD-SQISVLNLN--KTKG 312 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d-~~i~vwd~~--~~~~ 312 (540)
..++++++.|+.|++|++........+ .. ..|...+.+++|+|+|++|+++ +.+ +.|.+|++. ++.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~spdg~~l~~~----~~~~~~v~~~~~~~~~~~- 73 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT-QV-----VDVPGQVQPMVVSPDKRYLYVG----VRPEFRVLAYRIAPDDGA- 73 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE-EE-----EECSSCCCCEEECTTSSEEEEE----ETTTTEEEEEEECTTTCC-
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe-ee-----EecCCCCceEEECCCCCEEEEe----ecCCCeEEEEEecCCCCc-
Confidence 344555578999999999643221111 11 1355678899999999988887 554 999999998 432
Q ss_pred ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEE
Q 009203 313 RACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS 391 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 391 (540)
...+..+.. ...+.+++|+| ++++|++++ .++.|.+||+..+.. ............+.+++|+|+|+++++
T Consensus 74 ~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~ 145 (343)
T 1ri6_A 74 LTFAAESAL----PGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLP---VGVVDVVEGLDGCHSANISPDNRTLWV 145 (343)
T ss_dssp EEEEEEEEC----SSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEE---EEEEEEECCCTTBCCCEECTTSSEEEE
T ss_pred eeecccccc----CCCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcc---ccccccccCCCCceEEEECCCCCEEEE
Confidence 123333332 23688999999 888776665 488899999953321 111111123446899999999998888
Q ss_pred Ee-CCCeEEEEECCC-CCeee------eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc
Q 009203 392 AG-ADKRIIGFDAGV-GRADF------KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES 463 (540)
Q Consensus 392 ~~-~dg~i~iwd~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 463 (540)
++ .++.|++||+.+ ++... ..........+.|+|++. .+++++..++.|.+||+................
T Consensus 146 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~--~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~ 223 (343)
T 1ri6_A 146 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ--YAYCVNELNSSVDVWELKDPHGNIECVQTLDMM 223 (343)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS--EEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred ecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC--EEEEEeCCCCEEEEEEecCCCCcEEEEeecccc
Confidence 87 899999999987 55422 122345677899999873 244566689999999996422111111001111
Q ss_pred C---ccccCeEEEEEcCCCCEEEE-EeCCCcEEEEeccCC--CCcccccccccccceeEEEEcCCCCEEEEEE-cCCcEE
Q 009203 464 S---ESQSALINQSWSPDGLYITS-GSADPVIHLFDIRYS--ANKPSQSIRAHQKRVFKAVWHYSHPLLISIS-SDLNIG 536 (540)
Q Consensus 464 ~---~~~~~v~~~~~sp~g~~l~s-g~~dg~i~iwd~~~~--~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~-~dg~v~ 536 (540)
. .....+.+++|+|+|++|++ +..++.|.+||+... ..+.+..+..+.. +.+++|+|+|++|++++ .|+.|.
T Consensus 224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~ 302 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHIS 302 (343)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEE
T ss_pred CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEE
Confidence 1 11346778999999998774 557899999999831 1234444544444 89999999999888887 689999
Q ss_pred EEeC
Q 009203 537 LHKI 540 (540)
Q Consensus 537 iw~l 540 (540)
+|++
T Consensus 303 v~~~ 306 (343)
T 1ri6_A 303 VYEI 306 (343)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9953
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=2.3e-24 Score=230.05 Aligned_cols=279 Identities=11% Similarity=0.099 Sum_probs=200.9
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
.|.+++|+|| |++|++++. +.|.+||+.++. ....+ ..|...+.+++|+|||++|+++ + ++.|
T Consensus 110 ~v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l--------~~~~~~~~~~~~SPDG~~la~~----~-~~~i 174 (741)
T 2ecf_A 110 GIVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQL--------THGEGFATDAKLSPKGGFVSFI----R-GRNL 174 (741)
T ss_dssp ESCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBC--------CCSSSCEEEEEECTTSSEEEEE----E-TTEE
T ss_pred CcceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEc--------ccCCcccccccCCCCCCEEEEE----e-CCcE
Confidence 3899999996 888888886 899999998872 22223 3566779999999999999987 4 5699
Q ss_pred EEEecCCCCCceeEEeecCCCCc-------------ccceeEEEEeCCCCCEEEEEecCC--------------------
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHV-------------KGIINSIIFLPWENPCFATGGSDH-------------------- 349 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~~l~s~~~dg-------------------- 349 (540)
++||+.++ ............ ...+.+++|+| |+++|++++.|+
T Consensus 175 ~~~d~~~g---~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 175 WVIDLASG---RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp EEEETTTT---EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred EEEecCCC---CEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 99999875 333333221000 00147899999 999999987765
Q ss_pred -------------cEEEEecCC-CCCccccceeec-ccCCcceeEEEeccCCCEEEEEeC-----CCeEEEEECCCCCee
Q 009203 350 -------------AVVLWSERD-AEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSAGA-----DKRIIGFDAGVGRAD 409 (540)
Q Consensus 350 -------------~i~iwd~~~-~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~ 409 (540)
.|++||+.+ ++. ..+.. ..|...+.+++| |||+.|++++. +..|++||+.+++..
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~ 325 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQT----QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR 325 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCC----EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE
T ss_pred eecCCCCCCCCeeEEEEEECCCCCce----EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE
Confidence 789999988 763 22221 247788999999 99999997764 567999999998875
Q ss_pred eeeccCc-----cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE-EEcCCCCEEE
Q 009203 410 FKHQIES-----KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ-SWSPDGLYIT 483 (540)
Q Consensus 410 ~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~ 483 (540)
....... .+..+.|+|++ .++++++.+|.++||.+..... .. .+..|...+..+ .|+|+|+.|+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~spdg---~~~~~~~~~g~~~l~~~~~~~~-~~------~l~~~~~~v~~~~~~s~dg~~l~ 395 (741)
T 2ecf_A 326 VLAHETSPTWVPLHNSLRFLDDG---SILWSSERTGFQHLYRIDSKGK-AA------ALTHGNWSVDELLAVDEKAGLAY 395 (741)
T ss_dssp EEEEEECSSCCCCCSCCEECTTS---CEEEEECTTSSCEEEEECSSSC-EE------ESCCSSSCEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCcCCcCCceEECCCC---eEEEEecCCCccEEEEEcCCCC-ee------eeeecceEEEeEeEEeCCCCEEE
Confidence 5433221 23467899987 5888888999888887763222 22 345566778887 5999998775
Q ss_pred -EEeCCC--cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC----CcEEEEe
Q 009203 484 -SGSADP--VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD----LNIGLHK 539 (540)
Q Consensus 484 -sg~~dg--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d----g~v~iw~ 539 (540)
+++.++ .++||++... +.....+.. ...+..++|+|||++|+....+ ..+.+|+
T Consensus 396 ~~~~~~~~~~~~l~~~~~~-g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 396 FRAGIESARESQIYAVPLQ-GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp EEECSSCTTCBEEEEEETT-CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred EEEeCCCCceEEEEEEEcC-CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 455555 8999998753 344455554 5568899999999988766443 4567765
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.7e-24 Score=231.09 Aligned_cols=292 Identities=12% Similarity=0.039 Sum_probs=205.3
Q ss_pred cCceEEEEEecCCCcEEEEEeC-Cc-----eEEEEEcCCCCCcceeecccccC-------------CCCC---CCCceeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSAL-DG-----VIRLWQLQSRGSGASLLSTTDCL-------------SPKH---RRWPEDI 280 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~-dg-----~v~iw~~~~~~~~~~~~~~~~~~-------------~~~h---~~~V~~~ 280 (540)
...|.+++|+|| |++|++++. |+ .|.+||+.+++....+....... ...+ ...|.++
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999996 899999988 88 89999999876543332110000 0000 0237899
Q ss_pred EEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC
Q 009203 281 AWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE 360 (540)
Q Consensus 281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 360 (540)
+|+|||++|+++ +. +.|++||+.++... ....+.. +...+.+++|+| +|++|++++ ++.|++||+.+++
T Consensus 115 ~~SpDg~~l~~~----~~-~~i~~~d~~~~~~~-~~~~l~~---~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 115 QWSPDAQRLLFP----LG-GELYLYDLKQEGKA-AVRQLTH---GEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp EECTTSSEEEEE----ET-TEEEEEESSSCSTT-SCCBCCC---SSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTE
T ss_pred EECCCCCEEEEE----eC-CcEEEEECCCCCcc-eEEEccc---CCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCC
Confidence 999999999997 44 99999999876100 1222322 356799999999 999999887 4689999999876
Q ss_pred CccccceeecccCCc----------------ceeEEEeccCCCEEEEEeCCC----------------------------
Q 009203 361 DSWKPKALHRNLHSS----------------AVMGVAGMQQKQIVLSAGADK---------------------------- 396 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~----------------~v~~l~~s~~~~~l~~~~~dg---------------------------- 396 (540)
. ..+.. .+.. .+.+++|+|||++|++++.|+
T Consensus 184 ~----~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 258 (741)
T 2ecf_A 184 Q----MQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD 258 (741)
T ss_dssp E----EECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred E----EEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence 3 22211 1221 247899999999999988765
Q ss_pred -----eEEEEECCC-CCeeeee---ccCccEEEEeecCCCCCceEEEEEc-----CCCeEEEEECCCCcceeeeeccccc
Q 009203 397 -----RIIGFDAGV-GRADFKH---QIESKCMSVLPNPCDFNLFMVQTGT-----PGRQLRLYDIRLRQTEIHAFGWKQE 462 (540)
Q Consensus 397 -----~i~iwd~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~ 462 (540)
.|++||+.+ ++..... .....+..+.| |++ .+|++++ .+..|++||+.+++....... .
T Consensus 259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg---~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~ 331 (741)
T 2ecf_A 259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP---QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE---T 331 (741)
T ss_dssp CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET---TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE---E
T ss_pred CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC---CEEEEEEecccCCeEEEEEEECCCCceEEEEEc---C
Confidence 789999988 7764432 24466788999 987 4565543 356899999998774332211 0
Q ss_pred cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEE-EEcCCCCEEEE-EEcCC--cEEEE
Q 009203 463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKA-VWHYSHPLLIS-ISSDL--NIGLH 538 (540)
Q Consensus 463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l-~~s~~~~~l~s-~~~dg--~v~iw 538 (540)
.......+..++|+|||+++++++.||.+.||.++.. +. ...+..|...|..+ .|+|+|+.|+. ++.|+ .++||
T Consensus 332 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 332 SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence 0011113467899999999999999998888887742 34 67777788888887 59999987754 44555 89999
Q ss_pred eC
Q 009203 539 KI 540 (540)
Q Consensus 539 ~l 540 (540)
++
T Consensus 410 ~~ 411 (741)
T 2ecf_A 410 AV 411 (741)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=3.3e-24 Score=201.64 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=187.1
Q ss_pred EEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC-CCCceeEEee
Q 009203 241 TSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK-TKGRACVTFL 319 (540)
Q Consensus 241 tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~-~~~~~~~~~~ 319 (540)
.++.|+.|++||+.+++... + ..|...|.+++|+|+|++|+++ + ++.|.+||+.+ +. .....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~--------~~~~~~v~~~~~spdg~~l~~~----~-~~~i~~~d~~~~~~---~~~~~ 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-V--------WQTPELFEAPNWSPDGKYLLLN----S-EGLLYRLSLAGDPS---PEKVD 79 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-E--------EEESSCCEEEEECTTSSEEEEE----E-TTEEEEEESSSCCS---CEECC
T ss_pred CCCcceeEEEEeCCCCceee-e--------ccCCcceEeeEECCCCCEEEEE----c-CCeEEEEeCCCCCC---ceEec
Confidence 34678999999998876432 2 2466789999999999999997 4 88999999997 63 23333
Q ss_pred cCCCCcccceeEEEEeCCCCCEEEEEec--CCcEEEE--ecCCCCCccccceeecccCCcceeEEEeccCCCEEE-EEeC
Q 009203 320 DDKPHVKGIINSIIFLPWENPCFATGGS--DHAVVLW--SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVL-SAGA 394 (540)
Q Consensus 320 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~ 394 (540)
.. ++...+.+++|+| ++.+|++++. ++.+.|| ++.++.. ..+. +...+..++|+|+++.|+ +++.
T Consensus 80 ~~--~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~----~~~~---~~~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 80 TG--FATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTP----RLMT---KNLPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp CT--TCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCC----EECC---SSSSEEEEEECTTSSEEEEEEEE
T ss_pred cc--cccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCce----EEee---cCCCccceEECCCCCEEEEEECC
Confidence 32 2346689999999 9999999883 3445555 5555431 2222 233488999999999887 6778
Q ss_pred CCeEEEEEC--CCCCeeeeeccCccEEEEeecCCCCCceEEEE-EcCCCeEEEEECCCCcceeeeeccccccCccccCeE
Q 009203 395 DKRIIGFDA--GVGRADFKHQIESKCMSVLPNPCDFNLFMVQT-GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI 471 (540)
Q Consensus 395 dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (540)
++.+++|++ .++...........+.++.|+|++ .+++. +..++.+++|++........ .+..|...+.
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~ 220 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG---RWIYFNSSRTGQMQIWRVRVDGSSVE------RITDSAYGDW 220 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS---SEEEEEECTTSSCEEEEEETTSSCEE------ECCCCSEEEE
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECCCC---CEEEEEecCCCCccEEEECCCCCCcE------EEecCCcccC
Confidence 998999985 445544445556678899999987 45554 44688999998863222222 3345667889
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 472 NQSWSPDGLYITSGSAD-----------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 472 ~~~~sp~g~~l~sg~~d-----------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
+++|+|+|++|++++.+ +.|++||+.+.....+..+.+|...+.+++|+|+|++|++++.|.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999988765 569999998743334555557888999999999999998887664
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1.5e-23 Score=222.55 Aligned_cols=279 Identities=12% Similarity=0.133 Sum_probs=196.1
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
..|.+++|+|| +.++++ .++.|++||+.+++... + ..+...+.+++|+|||+.|+++ .++.|+
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~-l--------~~~~~~~~~~~~SpdG~~la~~-----~~~~i~ 144 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTY-L--------FDTNEETASLDFSPVGDRVAYV-----RNHNLY 144 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEE-E--------ECCTTCCTTCEECTTSSEEEEE-----ETTEEE
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEE-c--------cCCcccccCCcCCCCCCEEEEE-----ECCeEE
Confidence 56999999997 655555 35999999998765322 2 1345668899999999999986 579999
Q ss_pred EEecCC-----CCCceeEEeecCCCC-----------cccceeEEEEeCCCCCEEEEEe---------------------
Q 009203 304 VLNLNK-----TKGRACVTFLDDKPH-----------VKGIINSIIFLPWENPCFATGG--------------------- 346 (540)
Q Consensus 304 vwd~~~-----~~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~~l~s~~--------------------- 346 (540)
+||+.+ +.. ......... +...+.+++|+| ++++|++++
T Consensus 145 v~~~~~~~~~~g~~---~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 145 IARGGKLGEGMSRA---IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp EEECBCTTSCCCCC---EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred EEecCcccccCCCc---EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 999987 532 332222100 001258999999 999999987
Q ss_pred ------------cCCcEEEEecCCCCCccccceee-cccCCcceeEEEeccCCCEEEEEeCCC-----eEEEEECCCCCe
Q 009203 347 ------------SDHAVVLWSERDAEDSWKPKALH-RNLHSSAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVGRA 408 (540)
Q Consensus 347 ------------~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~ 408 (540)
.+..|++||+.+++. ..+. ...|...+.+++|+|||+.|++++.++ .|++||+.+++.
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~ 296 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF 296 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce
Confidence 346799999998763 2221 124677899999999999999988776 899999998833
Q ss_pred ee-ee--ccCc---cEEEEeecC--CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE-EEEcCCC
Q 009203 409 DF-KH--QIES---KCMSVLPNP--CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN-QSWSPDG 479 (540)
Q Consensus 409 ~~-~~--~~~~---~~~~~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g 479 (540)
.. .. .... .+..+.|+| ++ .++++++.++.+++|++........ .+..+...+.. ++|+|+|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~sp~~dg---~~l~~~~~~g~~~l~~~~~~~~~~~------~l~~~~~~v~~~~~~spdg 367 (706)
T 2z3z_A 297 VRTLFVETDKHYVEPLHPLTFLPGSNN---QFIWQSRRDGWNHLYLYDTTGRLIR------QVTKGEWEVTNFAGFDPKG 367 (706)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTCSS---EEEEEECTTSSCEEEEEETTSCEEE------ECCCSSSCEEEEEEECTTS
T ss_pred eeEEEEccCCCeECccCCceeecCCCC---EEEEEEccCCccEEEEEECCCCEEE------ecCCCCeEEEeeeEEcCCC
Confidence 22 21 1111 124578888 77 6888899999999998762222222 33456667776 7999999
Q ss_pred CEEEEEeC-CC----cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC----CcEEEEeC
Q 009203 480 LYITSGSA-DP----VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD----LNIGLHKI 540 (540)
Q Consensus 480 ~~l~sg~~-dg----~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d----g~v~iw~l 540 (540)
+.|+.++. ++ .|+.||+.+ +. ...+. |...+.+++|+|||++|+.++.+ +.|++||+
T Consensus 368 ~~l~~~~~~~~~~~~~l~~~d~~~--~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 368 TRLYFESTEASPLERHFYCIDIKG--GK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp SEEEEEESSSCTTCBEEEEEETTC--CC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred CEEEEEecCCCCceEEEEEEEcCC--CC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 98766554 44 556666654 33 33333 56679999999999988776544 56999984
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.1e-23 Score=214.42 Aligned_cols=280 Identities=11% Similarity=0.022 Sum_probs=209.1
Q ss_pred EEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec--
Q 009203 230 SLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL-- 307 (540)
Q Consensus 230 ~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~-- 307 (540)
+|+|+ +.++++++.|++|.+||..+++.+.++.. ++. +..++|+|+|++|+++ +.++.|.+||+
T Consensus 144 ~~~p~-~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-------g~~--~~~v~~spdg~~l~v~----~~d~~V~v~D~~~ 209 (543)
T 1nir_A 144 DLDLP-NLFSVTLRDAGQIALVDGDSKKIVKVIDT-------GYA--VHISRMSASGRYLLVI----GRDARIDMIDLWA 209 (543)
T ss_dssp CCCGG-GEEEEEEGGGTEEEEEETTTCCEEEEEEC-------STT--EEEEEECTTSCEEEEE----ETTSEEEEEETTS
T ss_pred ccCCC-CEEEEEEcCCCeEEEEECCCceEEEEEec-------Ccc--cceEEECCCCCEEEEE----CCCCeEEEEECcC
Confidence 37885 88999999999999999999887766631 333 7899999999999999 88899999999
Q ss_pred CCCCCceeEEeecCCCCcccceeEEEEeCC---CCCEEEEEe-cCCcEEEEecCCCCCccccceeeccc--------C-C
Q 009203 308 NKTKGRACVTFLDDKPHVKGIINSIIFLPW---ENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNL--------H-S 374 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~--------~-~ 374 (540)
.++ .++..+.. ...+.+++|+|. +++++++++ .+++|.+||..+++++. .+...+ | .
T Consensus 210 ~t~---~~~~~i~~----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~---~i~~~g~~~~~~~~~~~ 279 (543)
T 1nir_A 210 KEP---TKVAEIKI----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ---IVSTRGMTVDTQTYHPE 279 (543)
T ss_dssp SSC---EEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE---EEECCEECSSSCCEESC
T ss_pred CCC---cEEEEEec----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce---eecccCcccCccccccC
Confidence 654 45555543 345899999982 566777766 58999999999887632 222111 2 2
Q ss_pred cceeEEEeccCCCE-EEEEeCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceE-EEEEcCCCeEEEEECCCC
Q 009203 375 SAVMGVAGMQQKQI-VLSAGADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFM-VQTGTPGRQLRLYDIRLR 450 (540)
Q Consensus 375 ~~v~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~ 450 (540)
..+.++.++|++.. +++...++.|.+||+.+.+.+. ..........+.|+|++ ++ ++++..+++|.+||+.++
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg---~~l~va~~~~~~v~v~D~~tg 356 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSH---RYFMTAANNSNKVAVIDSKDR 356 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTS---CEEEEEEGGGTEEEEEETTTT
T ss_pred CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCC---CEEEEEecCCCeEEEEECCCC
Confidence 37899999997654 5666778999999998866543 34445567788999987 44 455667899999999988
Q ss_pred cceeeeeccccccCccccCeEEEEEcCC-CCEEEEEe-CCCcEEEEeccCCC-----CcccccccccccceeEEEEcCCC
Q 009203 451 QTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGS-ADPVIHLFDIRYSA-----NKPSQSIRAHQKRVFKAVWHYSH 523 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~-~dg~i~iwd~~~~~-----~~~~~~~~~h~~~i~~l~~s~~~ 523 (540)
+...... .....|.+....+ ++|+ |.+++++. .|++|.+||+.+.. .+.+.++.+|.+.+..++|+|+|
T Consensus 357 ~l~~~i~---~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg 432 (543)
T 1nir_A 357 RLSALVD---VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS 432 (543)
T ss_dssp EEEEEEE---CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred eEEEeec---cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC
Confidence 7543221 0112354433333 5777 66677775 68999999998621 56788889998889999999999
Q ss_pred CEEEEEE-------cCCcEEEEeC
Q 009203 524 PLLISIS-------SDLNIGLHKI 540 (540)
Q Consensus 524 ~~l~s~~-------~dg~v~iw~l 540 (540)
++|++++ .+++|.|||+
T Consensus 433 ~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 433 SHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp CEEEECCTTCSSHHHHTCEEEEET
T ss_pred CcEEEecCCCCCcccCceEEEEEC
Confidence 9999987 3789999995
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=2.7e-23 Score=199.21 Aligned_cols=279 Identities=8% Similarity=-0.012 Sum_probs=190.1
Q ss_pred EEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC
Q 009203 229 LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN 308 (540)
Q Consensus 229 l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~ 308 (540)
..|.++++.++++++.++.|.+||..+++....+. .+...+ .++|+|+|++|+++. ..++.|.+||+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~-~~~~s~dg~~l~~~~---~~~~~i~~~d~~ 70 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--------LGYDFV-DTAITSDCSNVVVTS---DFCQTLVQIETQ 70 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--------CCCCEE-EEEECSSSCEEEEEE---STTCEEEEEECS
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--------ccCCcc-eEEEcCCCCEEEEEe---CCCCeEEEEECC
Confidence 34566556778899999999999999887655542 223445 899999999766651 458899999999
Q ss_pred CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC---cEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203 309 KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH---AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ 385 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 385 (540)
++.. ....+.. +..+..+++|+| ++++++++..++ .|.+||+.+++. ...+. ....+.+++|+|+
T Consensus 71 ~~~~--~~~~~~~---~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~---~~~~~---~~~~~~~~~~spd 138 (331)
T 3u4y_A 71 LEPP--KVVAIQE---GQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKF---ISTIP---IPYDAVGIAISPN 138 (331)
T ss_dssp SSSC--EEEEEEE---CSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEE---EEEEE---CCTTEEEEEECTT
T ss_pred CCce--eEEeccc---CCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCe---EEEEE---CCCCccceEECCC
Confidence 8732 1333332 234444499999 999888555543 899999998764 22221 3445789999999
Q ss_pred CCEEEEE-eCCCe-EEEEECCCCCee-----eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203 386 KQIVLSA-GADKR-IIGFDAGVGRAD-----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 386 ~~~l~~~-~~dg~-i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 458 (540)
|++++++ ..++. |.+|++.....+ ...........+.++|++. .+++++..++.|.+||+.+++......
T Consensus 139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~--~l~v~~~~~~~v~v~d~~~~~~~~~~~- 215 (331)
T 3u4y_A 139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGN--FAFVANLIGNSIGILETQNPENITLLN- 215 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSS--EEEEEETTTTEEEEEECSSTTSCEEEE-
T ss_pred CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCC--EEEEEeCCCCeEEEEECCCCcccceee-
Confidence 9866554 55578 999998764432 1223345678899999873 255666778999999998776511000
Q ss_pred cccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcc--ccccccc----cc---ceeEEEEcCCCCEEEE
Q 009203 459 WKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKP--SQSIRAH----QK---RVFKAVWHYSHPLLIS 528 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~--~~~~~~h----~~---~i~~l~~s~~~~~l~s 528 (540)
.+. ....+..++|+|+|++|++++ .++.|.+||+.+ ++. +..+..+ .. ....++|+|||++|++
T Consensus 216 ---~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 216 ---AVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS--GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp ---EEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT--TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ---ecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC--CceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 111 235678899999999776554 578899999987 333 2222211 22 2356899999998765
Q ss_pred EE-cCCcEEEEeC
Q 009203 529 IS-SDLNIGLHKI 540 (540)
Q Consensus 529 ~~-~dg~v~iw~l 540 (540)
++ .++.|.+||+
T Consensus 290 ~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 290 SANISRELKVFTI 302 (331)
T ss_dssp EETTTTEEEEEET
T ss_pred ecCCCCcEEEEEe
Confidence 55 4579999986
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=2.6e-23 Score=229.56 Aligned_cols=298 Identities=7% Similarity=-0.014 Sum_probs=217.0
Q ss_pred CeEEEeccc----hhcccccCce-------EEEEEecCCCcEEEEEeCC------ceEEEEEcCCCCCcceeecc-----
Q 009203 208 ATIHCHTSN----HVSSLHKRKL-------RSLSLNPVNEQLFVTSALD------GVIRLWQLQSRGSGASLLST----- 265 (540)
Q Consensus 208 ~~i~~~~~~----~~~~~h~~~V-------~~l~~spd~~~~l~tg~~d------g~v~iw~~~~~~~~~~~~~~----- 265 (540)
..|.+|+.. ..+.+|...+ .+++|+|| |+++++++.+ ..|.+|++..+.... +...
T Consensus 80 ~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpD-g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~ 157 (1045)
T 1k32_A 80 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD-GNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGPATHI 157 (1045)
T ss_dssp EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTT-CCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCSCSEE
T ss_pred CeEEEEECCCCCeEEcccCCCcccccccccccccCCCC-CEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCCCccee
Confidence 467777543 3467888888 99999997 6788887754 357777776543211 0000
Q ss_pred --------------------------------------cccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203 266 --------------------------------------TDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL 307 (540)
Q Consensus 266 --------------------------------------~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~ 307 (540)
.... .+|...+.++.|+++ .+++++ +.++.+.+|.+
T Consensus 158 ~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d-~l~~~~----~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH-RIYFIT----DIDGFGQIYST 231 (1045)
T ss_dssp EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETT-EEEEEE----CTTSSCEEEEE
T ss_pred eeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC-cCCCCcccceEEeCC-EEEEEE----eccCceEEEEE
Confidence 0001 367788999999988 566676 78899999987
Q ss_pred CCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc---------cCCccee
Q 009203 308 NKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN---------LHSSAVM 378 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~v~ 378 (540)
.... .....+.. +. .+..++|+| ++..|+++. ++.|++||+..... ..+... .|...+.
T Consensus 232 ~~~g--~~~~~l~~---~~-~~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l----~~l~~~~~~~~~~~~~~~~~v~ 299 (1045)
T 1k32_A 232 DLDG--KDLRKHTS---FT-DYYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKI----EKIEIGDLESPEDRIISIPSKF 299 (1045)
T ss_dssp ETTS--CSCEECCC---CC-SSCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCE----EECCCCCCCBCCSEEEECGGGG
T ss_pred eCCC--CcceEecC---CC-CcceeeEcC-CCCEEEEEe-CCEEEEecCCceEe----eeeccCcccccccccccccccc
Confidence 6421 12333332 22 366789999 999888874 89999999944331 111110 1345799
Q ss_pred EEEec-cCCCEEEEEeCCCeEEEEECCCCCeeeeeccCc-cEEEEeecCCCCCceEEEEEcCCCeEE-EEECCCCcceee
Q 009203 379 GVAGM-QQKQIVLSAGADKRIIGFDAGVGRADFKHQIES-KCMSVLPNPCDFNLFMVQTGTPGRQLR-LYDIRLRQTEIH 455 (540)
Q Consensus 379 ~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~v~-i~d~~~~~~~~~ 455 (540)
+++|+ |+|+.|++++ ++.|++|++..+.......... .+..+.|+ ++ ..++.++.++.+. +||+.++...
T Consensus 300 ~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg---~~l~~~s~~~~l~~~~d~~~~~~~-- 372 (1045)
T 1k32_A 300 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TK---VAFIHGTREGDFLGIYDYRTGKAE-- 372 (1045)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SE---EEEEEEETTEEEEEEEETTTCCEE--
T ss_pred eeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CC---CeEEEEECCCceEEEEECCCCCce--
Confidence 99999 9999999888 7899999998877654434444 67788898 65 6788877788898 9999876532
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC--
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL-- 533 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg-- 533 (540)
.+.+|...+..++|||||++|++++.++.|++||+.+ ++....+.+|.+.+.+++|+|||++|++++.++
T Consensus 373 ------~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t--g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 373 ------KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET--GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp ------ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred ------EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC--CceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence 1235677899999999999999999999999999987 566656667888999999999999999887754
Q ss_pred --------cEEEEeC
Q 009203 534 --------NIGLHKI 540 (540)
Q Consensus 534 --------~v~iw~l 540 (540)
.|++||+
T Consensus 445 ~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 445 ETDGYVMQAIHVYDM 459 (1045)
T ss_dssp TTCSCCEEEEEEEET
T ss_pred cccCCCCCeEEEEEC
Confidence 8999985
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=5.6e-24 Score=226.47 Aligned_cols=285 Identities=11% Similarity=-0.000 Sum_probs=196.9
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC---CceeEEEecCCCeEEEEeecC----
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR---WPEDIAWHPQGNSLFSAHTAD---- 296 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~~~~~---- 296 (540)
..+.+++|+|| |+++++ +.||+|++||+.+++....+ .+|.. .|.+++|+|||++|+++...+
T Consensus 17 ~~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g~~~~~~--------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~ 86 (723)
T 1xfd_A 17 IHDPEAKWISD-TEFIYR-EQKGTVRLWNVETNTSTVLI--------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQ 86 (723)
T ss_dssp CCCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGCCCEEEE--------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred ccccccEEcCC-CcEEEE-eCCCCEEEEECCCCcEEEEe--------ccccccccccceEEECCCCCEEEEEecCcccee
Confidence 34788999996 777766 78999999999988765444 23333 589999999999999982211
Q ss_pred -CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203 297 -SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 297 -~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.++.|.+||+.++.. ..+.....+...+..++|+| +|+.|++++. +.|++||+.+++. ..+.. .+..
T Consensus 87 ~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~----~~~~~-~~~~ 155 (723)
T 1xfd_A 87 HSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQA----IRVVS-TGKE 155 (723)
T ss_dssp SCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCC----EEEEC-CCBT
T ss_pred ecceeeEEEEECCCCce----EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCce----EEEec-CCCC
Confidence 1138899999998632 23333233445588999999 9999999886 7999999998764 22221 1222
Q ss_pred ------------------ceeEEEeccCCCEEEEEeCCC----------------------------------eEEEEEC
Q 009203 376 ------------------AVMGVAGMQQKQIVLSAGADK----------------------------------RIIGFDA 403 (540)
Q Consensus 376 ------------------~v~~l~~s~~~~~l~~~~~dg----------------------------------~i~iwd~ 403 (540)
.+.+++|+|||+.|++++.|+ .|++||+
T Consensus 156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~ 235 (723)
T 1xfd_A 156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (723)
T ss_dssp TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence 237899999999999987553 7999999
Q ss_pred CCCCeeeeecc-------CccEEEEeecCCCCCceEEEEEc----CCCeEEEEECCCCcceeeeeccccccCccccCe--
Q 009203 404 GVGRADFKHQI-------ESKCMSVLPNPCDFNLFMVQTGT----PGRQLRLYDIRLRQTEIHAFGWKQESSESQSAL-- 470 (540)
Q Consensus 404 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v-- 470 (540)
.+++....... ...+..+.|+|++ .++++.. .+..|++||+.+++...... ..+...+
T Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg---~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~------~~~~~~~~~ 306 (723)
T 1xfd_A 236 NGPTHDLEMMPPDDPRMREYYITMVKWATST---KVAVTWLNRAQNVSILTLCDATTGVCTKKHE------DESEAWLHR 306 (723)
T ss_dssp SSSCCCEECCCCCCGGGSSEEEEEEEESSSS---EEEEEEEETTSCEEEEEEEETTTCCEEEEEE------EECSSCCCC
T ss_pred CCCceeEEeeCCccCCCccceeEEEEEeCCC---eEEEEEEcCCCCeEEEEEEeCCCCcceEEEE------eccCCEEec
Confidence 98875333222 4567889999988 5665553 23579999998876433211 1122233
Q ss_pred --EEEEEcCCCCEEEE--EeCCC------cEEEEe-ccCCCCc--ccccccccccceeE-EEEcCCCCEEEEEEcC---C
Q 009203 471 --INQSWSPDGLYITS--GSADP------VIHLFD-IRYSANK--PSQSIRAHQKRVFK-AVWHYSHPLLISISSD---L 533 (540)
Q Consensus 471 --~~~~~sp~g~~l~s--g~~dg------~i~iwd-~~~~~~~--~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~d---g 533 (540)
..++|+|||+.|+. +..++ .|++|| ... +. ....+..+...+.. ++|+|||+.|+..+.+ +
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 384 (723)
T 1xfd_A 307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN--SSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPR 384 (723)
T ss_dssp CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC--SSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC--CCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCc
Confidence 37899999997775 44566 466677 333 22 14445433334544 6999999998776655 7
Q ss_pred cEEEEeC
Q 009203 534 NIGLHKI 540 (540)
Q Consensus 534 ~v~iw~l 540 (540)
.++||++
T Consensus 385 ~~~l~~~ 391 (723)
T 1xfd_A 385 RRQLYSA 391 (723)
T ss_dssp CCEEEEE
T ss_pred ceEEEEE
Confidence 8999974
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.6e-22 Score=192.33 Aligned_cols=272 Identities=8% Similarity=-0.024 Sum_probs=185.6
Q ss_pred EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEE-EEEeCCceEEEEEcCCCCC-cceeecccccCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLF-VTSALDGVIRLWQLQSRGS-GASLLSTTDCLSPKH 273 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l-~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~h 273 (540)
+.+...++.|.+|+.. ..+..+...+ +++|+|| +++| +++..++.|.+||..+++. ...+ ..+
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~ 82 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEPPKVVAI--------QEG 82 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSSCEEEEE--------EEC
T ss_pred EEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCceeEEec--------ccC
Confidence 4556678899999754 2344556667 9999997 6655 4555589999999998875 3333 233
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCC-C--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEE-EEEecCC
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGD-S--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDH 349 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d-~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg 349 (540)
..+..+++|+|+|++|+++ ..+ + .|.+||+.++ ..+..+.. ...+.+++|+| +++++ +++..++
T Consensus 83 ~~~~~~~~~s~dg~~l~~~----~~~~~~~~i~v~d~~~~---~~~~~~~~----~~~~~~~~~sp-dg~~l~~~~~~~~ 150 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTV----TGLNHPFNMQSYSFLKN---KFISTIPI----PYDAVGIAISP-NGNGLILIDRSSA 150 (331)
T ss_dssp SSCCCCEEECTTSSEEEEC----CCSSSSCEEEEEETTTT---EEEEEEEC----CTTEEEEEECT-TSSCEEEEEETTT
T ss_pred CCCccceEECCCCCEEEEe----cCCCCcccEEEEECCCC---CeEEEEEC----CCCccceEECC-CCCEEEEEecCCC
Confidence 3444459999999999954 444 2 9999999876 44554443 23478999999 87755 5555668
Q ss_pred c-EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE-eCCCeEEEEECCCCCe---eeeeccCccEEEEeec
Q 009203 350 A-VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA-GADKRIIGFDAGVGRA---DFKHQIESKCMSVLPN 424 (540)
Q Consensus 350 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~ 424 (540)
. |.+|++.......... .........+.+++|+|+|++++++ ..++.|.+||+.+++. +........+..+.++
T Consensus 151 ~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~s 229 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVS 229 (331)
T ss_dssp TEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEEC
T ss_pred ceEEEEEECCCCcEeecC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEEC
Confidence 8 9999998654321111 1111244568999999999966555 4688999999998887 6666666777889999
Q ss_pred CCCCCceEE-EEEcCCCeEEEEECCCCcceee-eeccc-cccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccC
Q 009203 425 PCDFNLFMV-QTGTPGRQLRLYDIRLRQTEIH-AFGWK-QESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRY 498 (540)
Q Consensus 425 ~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~-~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~ 498 (540)
|++ .++ ++...++.|.+||+.+++.... .+... ............++|+|||++|++++ .++.|.+||+..
T Consensus 230 pdg---~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 230 RDG---STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp TTS---SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CCC---CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 988 444 4455678899999988764111 11000 00011122235689999999886555 567999999985
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=8.5e-23 Score=217.34 Aligned_cols=299 Identities=11% Similarity=0.074 Sum_probs=201.8
Q ss_pred CCCCeEEEeccc-----hhcccccC---ceEEEEEecCCCcEEEEEeCC---------ceEEEEEcCCCCCcceeecccc
Q 009203 205 ASPATIHCHTSN-----HVSSLHKR---KLRSLSLNPVNEQLFVTSALD---------GVIRLWQLQSRGSGASLLSTTD 267 (540)
Q Consensus 205 ~~d~~i~~~~~~-----~~~~~h~~---~V~~l~~spd~~~~l~tg~~d---------g~v~iw~~~~~~~~~~~~~~~~ 267 (540)
+.|++|++|+.. .++.+|.. .|.+++|||| |++|++++.+ +.+.+||+.+++. ..+...
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-- 109 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP-- 109 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT--
T ss_pred eCCCCEEEEECCCCcEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEECCCCce-EeccCC--
Confidence 467899999764 34566665 4999999996 8999998764 7888999998764 222111
Q ss_pred cCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC-c--------------ccceeEE
Q 009203 268 CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH-V--------------KGIINSI 332 (540)
Q Consensus 268 ~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~--------------~~~v~~~ 332 (540)
.+|...+..++|+|||+.|+.+ + ++.|++||+.++.. ......... . .+.+.++
T Consensus 110 ---~~~~~~~~~~~~SPdG~~la~~----~-~~~i~~~~~~~g~~---~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~ 178 (723)
T 1xfd_A 110 ---EVSNAKLQYAGWGPKGQQLIFI----F-ENNIYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (723)
T ss_dssp ---TCCSCCCSBCCBCSSTTCEEEE----E-TTEEEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred ---ccccccccccEECCCCCEEEEE----E-CCeEEEEECCCCce---EEEecCCCCCceECcccceeEEEEeccCcceE
Confidence 3566678999999999999997 4 47999999997633 333322100 0 0123789
Q ss_pred EEeCCCCCEEEEEecCC----------------------------------cEEEEecCCCCCccccceeec----ccCC
Q 009203 333 IFLPWENPCFATGGSDH----------------------------------AVVLWSERDAEDSWKPKALHR----NLHS 374 (540)
Q Consensus 333 ~~~p~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~----~~~~ 374 (540)
+|+| +++.|++++.|+ .|++||+.+++.. ..+.. ..+.
T Consensus 179 ~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~---~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 179 WWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD---LEMMPPDDPRMRE 254 (723)
T ss_dssp EECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC---EECCCCCCGGGSS
T ss_pred EECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee---EEeeCCccCCCcc
Confidence 9999 999999887553 7999999887631 22211 1136
Q ss_pred cceeEEEeccCCCEEEEEeC----CCeEEEEECCCCCeeeeec--cCccE----EEEeecCCCCCceEEE-EEcCCC---
Q 009203 375 SAVMGVAGMQQKQIVLSAGA----DKRIIGFDAGVGRADFKHQ--IESKC----MSVLPNPCDFNLFMVQ-TGTPGR--- 440 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~l~-~~~~dg--- 440 (540)
..+.+++|+|||+++++... +..|++||+.+++...... ....+ ..+.|+|++.. +++ ++..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK--FFFIRAIPQGGRG 332 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS--EEEEEEECCSSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe--EEEEEecccCCCc
Confidence 78999999999998877653 3579999999888654432 12222 36789998842 233 355667
Q ss_pred ---eEEEEE-CCCCcc-eeeeeccccccCccccCeEE-EEEcCCCCEEEEEeCC---CcEEEEeccCCCCcccccccc--
Q 009203 441 ---QLRLYD-IRLRQT-EIHAFGWKQESSESQSALIN-QSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQSIRA-- 509 (540)
Q Consensus 441 ---~v~i~d-~~~~~~-~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~-- 509 (540)
.|.+|| ..++.. ... .+..+...+.. ++|+|||+.|+..+.+ +.++||++..........+..
T Consensus 333 ~~~~l~~~d~~~~~~~~~~~------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 406 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSNDNIQ------SITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDL 406 (723)
T ss_dssp CEEEEEEECSSCCSSSCCCC------BSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTS
T ss_pred ceeEEEEEeccCCCCcccee------EeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccc
Confidence 566777 333320 011 22222334554 6999999999766554 789999997632223334443
Q ss_pred -cccceeEEEEcCCCCEEEEEE
Q 009203 510 -HQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 510 -h~~~i~~l~~s~~~~~l~s~~ 530 (540)
|...+..++|+|||++|+...
T Consensus 407 ~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 407 VENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SSSCCCCEEEECTTSSEEEEEC
T ss_pred cCCCCeEEEEECCCCCEEEEEc
Confidence 667789999999999877653
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=2.4e-23 Score=199.90 Aligned_cols=269 Identities=10% Similarity=0.063 Sum_probs=192.4
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC-CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR-WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
.+|++++.++.|.+||+.+++....+.. ++.. .+..++|+|+|+.++++. ..++.|.+||+.+++ .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg~~l~v~~---~~~~~v~~~d~~~~~---~ 68 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-------ADAGPTPMVPMVAPGGRIAYATV---NKSESLVKIDLVTGE---T 68 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-------TTCTTCCCCEEECTTSSEEEEEE---TTTTEEEEEETTTCC---E
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-------CCCCCCccceEEcCCCCEEEEEe---CCCCeEEEEECCCCC---e
Confidence 4789999999999999998776555431 2222 377899999998665441 678999999998763 3
Q ss_pred EEeecCCC--CcccceeEEEEeCCCCCEEEEEe------------cCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 316 VTFLDDKP--HVKGIINSIIFLPWENPCFATGG------------SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 316 ~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
+..+.... .+...+.+++|+| ++++++++. .++.|.+||+.+++. ...+. ....+.+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~---~~~~~~~~~ 141 (337)
T 1pby_B 69 LGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAFE---APRQITMLA 141 (337)
T ss_dssp EEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEEE---CCSSCCCEE
T ss_pred EeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcE---EEEEe---CCCCcceeE
Confidence 33333210 0122577899999 998888876 579999999988764 12221 245678899
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC---------------------
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR--------------------- 440 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------------- 440 (540)
|+|+|++|+++ ++.|.+||+.+++.............+.++|++.. +++++..++
T Consensus 142 ~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 142 WARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA--VWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp ECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC--CCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred ECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccE--EeeeccCCCceeeeeecccccccccccccc
Confidence 99999988888 67899999998887655443321112356666521 222222222
Q ss_pred --eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEE
Q 009203 441 --QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV 518 (540)
Q Consensus 441 --~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~ 518 (540)
.|.+||+.+++.... .+..+...+.+++|+|+|++|+++ ++.|++||+.+ ++.+..+.. ...+.+++
T Consensus 218 ~~~v~~~d~~~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~--~~~~~~~~~-~~~~~~~~ 286 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMR------EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK--NASIKRVPL-PHSYYSVN 286 (337)
T ss_dssp EEEEEEEETTTCCEEEE------EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT--TEEEEEEEC-SSCCCEEE
T ss_pred ccceEEEeCCCCCceEe------ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC--CcCcceecC-CCceeeEE
Confidence 578999998775421 223455678899999999999988 79999999987 565555553 34688999
Q ss_pred EcCCCCEEEEEEcCCcEEEEeC
Q 009203 519 WHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 519 ~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|+|+|++|++++.++.|.+||+
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEET
T ss_pred ECCCCCEEEEEcCCCcEEEEEC
Confidence 9999999999999999999985
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=9.3e-22 Score=190.17 Aligned_cols=274 Identities=8% Similarity=0.036 Sum_probs=197.9
Q ss_pred cCceEEEEEecCCCcEEEEEeC-------CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 223 KRKLRSLSLNPVNEQLFVTSAL-------DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
...+..++|+|| +++|++++. ++.|.+||..+++....+.. ...+..++|+|+|++++++.
T Consensus 40 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~v~~-- 107 (353)
T 3vgz_A 40 GKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---------DLKPFGATINNTTQTLWFGN-- 107 (353)
T ss_dssp ESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---------SSCCCSEEEETTTTEEEEEE--
T ss_pred ccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---------CCCcceEEECCCCCEEEEEe--
Confidence 357889999996 666666653 67899999998876665532 13367899999999655541
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCc------ccceeEEEEeCCCCCEEEEEe--cCCcEEEEecCCCCCccccce
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHV------KGIINSIIFLPWENPCFATGG--SDHAVVLWSERDAEDSWKPKA 367 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~ 367 (540)
..++.|.+||..+++ .+..+...... ...+.+++|+| +++++++++ .++.|.+||+.+++. ...
T Consensus 108 -~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~---~~~ 179 (353)
T 3vgz_A 108 -TVNSAVTAIDAKTGE---VKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKL---KTA 179 (353)
T ss_dssp -TTTTEEEEEETTTCC---EEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEE---EEE
T ss_pred -cCCCEEEEEeCCCCe---eEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCce---EEE
Confidence 668999999999873 33333321100 01268899999 888776665 478899999998764 222
Q ss_pred eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----CccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203 368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----ESKCMSVLPNPCDFNLFMVQTGTPGRQL 442 (540)
Q Consensus 368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~v 442 (540)
+ ..+...+.+++|+|+|+++++++.++.|.+||+.+++....... ......+.++|++. .++++...++.|
T Consensus 180 ~--~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v 255 (353)
T 3vgz_A 180 I--QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ--RAFITDSKAAEV 255 (353)
T ss_dssp E--CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT--EEEEEESSSSEE
T ss_pred e--cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC--EEEEEeCCCCEE
Confidence 2 22445688999999999999999999999999999887665443 34567789999873 244555566999
Q ss_pred EEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcccccccccccceeEEEEcC
Q 009203 443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY 521 (540)
Q Consensus 443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~ 521 (540)
.+||+.+++...... . ....+++|+|+|+++++++ .++.|.+||..+ ++.+..+..+ ..+.+++|+|
T Consensus 256 ~~~d~~~~~~~~~~~-------~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~-~~~~~~~~s~ 323 (353)
T 3vgz_A 256 LVVDTRNGNILAKVA-------A--PESLAVLFNPARNEAYVTHRQAGKVSVIDAKS--YKVVKTFDTP-THPNSLALSA 323 (353)
T ss_dssp EEEETTTCCEEEEEE-------C--SSCCCEEEETTTTEEEEEETTTTEEEEEETTT--TEEEEEEECC-SEEEEEEECT
T ss_pred EEEECCCCcEEEEEE-------c--CCCceEEECCCCCEEEEEECCCCeEEEEECCC--CeEEEEEecC-CCCCeEEEcC
Confidence 999998877533221 1 1125689999999665554 689999999987 6666666543 3689999999
Q ss_pred CCCEEEEEEcC
Q 009203 522 SHPLLISISSD 532 (540)
Q Consensus 522 ~~~~l~s~~~d 532 (540)
+|++|+.+..+
T Consensus 324 dg~~l~v~~~~ 334 (353)
T 3vgz_A 324 DGKTLYVSVKQ 334 (353)
T ss_dssp TSCEEEEEEEC
T ss_pred CCCEEEEEEcc
Confidence 99977666554
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=3.7e-22 Score=192.07 Aligned_cols=298 Identities=9% Similarity=0.084 Sum_probs=194.7
Q ss_pred EecCCCCeEEEeccc-----hh--cccccCceEEEEEecCCCcEEEEEeCC-ceEEEEEcC--CCCCcceeecccccCCC
Q 009203 202 RTSASPATIHCHTSN-----HV--SSLHKRKLRSLSLNPVNEQLFVTSALD-GVIRLWQLQ--SRGSGASLLSTTDCLSP 271 (540)
Q Consensus 202 ~~~~~d~~i~~~~~~-----~~--~~~h~~~V~~l~~spd~~~~l~tg~~d-g~v~iw~~~--~~~~~~~~~~~~~~~~~ 271 (540)
..++.++.|.+|+.. .. ...|...+.+++|+|+ +++|++++.+ +.|.+|++. ++.. ...... .
T Consensus 9 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~--~~~~~~----~ 81 (343)
T 1ri6_A 9 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGAL--TFAAES----A 81 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCE--EEEEEE----E
T ss_pred EeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCce--eecccc----c
Confidence 344568889999652 11 2457788999999996 8878887776 999999997 4332 111111 1
Q ss_pred CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCc
Q 009203 272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHA 350 (540)
Q Consensus 272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~ 350 (540)
.+ ..+..++|+|+|++|+++. ..++.|.+||+..+........+.. ...+.+++|+| +++++++++ .++.
T Consensus 82 ~~-~~~~~~~~s~dg~~l~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 82 LP-GSLTHISTDHQGQFVFVGS---YNAGNVSVTRLEDGLPVGVVDVVEG----LDGCHSANISP-DNRTLWVPALKQDR 152 (343)
T ss_dssp CS-SCCSEEEECTTSSEEEEEE---TTTTEEEEEEEETTEEEEEEEEECC----CTTBCCCEECT-TSSEEEEEEGGGTE
T ss_pred cC-CCCcEEEEcCCCCEEEEEe---cCCCeEEEEECCCCccccccccccC----CCCceEEEECC-CCCEEEEecCCCCE
Confidence 12 2678999999999876651 4589999999953322234444443 23488999999 888877776 8899
Q ss_pred EEEEecCC-CCCccccc--eeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCC--CCee--eeec-------cC
Q 009203 351 VVLWSERD-AEDSWKPK--ALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGV--GRAD--FKHQ-------IE 415 (540)
Q Consensus 351 i~iwd~~~-~~~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~--~~~~--~~~~-------~~ 415 (540)
|.+||+.+ +... ... ... ......+.+++|+|+|+++++++ .++.|.+||+.. +... .... ..
T Consensus 153 v~~~d~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 153 ICLFTVSDDGHLV-AQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp EEEEEECTTSCEE-EEEEEEEE-CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred EEEEEecCCCcee-eecccccc-cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 99999987 5421 011 111 12345788999999999776555 789999999954 4331 1111 12
Q ss_pred ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEE
Q 009203 416 SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLF 494 (540)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iw 494 (540)
..+..+.|+|++. .+++++..++.|.+||+........... .+..+. .+.+++|+|+|++|++++ .++.|.+|
T Consensus 231 ~~~~~i~~s~dg~--~l~v~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 231 RWAADIHITPDGR--HLYACDRTASLITVFSVSEDGSVLSKEG---FQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp CCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCCEEEEE---EEECSS-SCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred CCccceEECCCCC--EEEEEecCCCEEEEEEEcCCCCceEEee---eecCCC-ccceEEECCCCCEEEEecCCCCeEEEE
Confidence 3456799999873 2444666899999999983211111110 112222 388999999999888887 68999999
Q ss_pred eccCCCC--cccccccccccceeEEEEcCCCC
Q 009203 495 DIRYSAN--KPSQSIRAHQKRVFKAVWHYSHP 524 (540)
Q Consensus 495 d~~~~~~--~~~~~~~~h~~~i~~l~~s~~~~ 524 (540)
+++...+ +.+..+.. .....+++|.++.+
T Consensus 305 ~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 305 EIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 7764223 23333433 23567788876543
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=3.3e-22 Score=220.76 Aligned_cols=280 Identities=8% Similarity=0.025 Sum_probs=218.8
Q ss_pred hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
.+.+|.+.+.++.|+++ .++++++.|+.++||.+... .....+ ..|. .+..++|+|+|+.|+++
T Consensus 198 ~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l--------~~~~-~~~~~~~SpDG~~la~~---- 262 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKH--------TSFT-DYYPRHLNTDGRRILFS---- 262 (1045)
T ss_dssp EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEEC--------CCCC-SSCEEEEEESSSCEEEE----
T ss_pred ECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEe--------cCCC-CcceeeEcCCCCEEEEE----
Confidence 35799999999999984 67788888999999987642 222222 2333 46778999999999986
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCC--------CcccceeEEEEe-CCCCCEEEEEecCCcEEEEecCCCCCccccce
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKP--------HVKGIINSIIFL-PWENPCFATGGSDHAVVLWSERDAEDSWKPKA 367 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 367 (540)
.++.|.+||+... .+..+.... .+...+.+++|+ | ++..|++++ ++.|++|++.++.. ..
T Consensus 263 -~~~~i~~~d~~~~----~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~----~~ 331 (1045)
T 1k32_A 263 -KGGSIYIFNPDTE----KIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYV----LK 331 (1045)
T ss_dssp -ETTEEEEECTTTC----CEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBE----EE
T ss_pred -eCCEEEEecCCce----EeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCce----EE
Confidence 4899999999432 233333211 023468999999 9 999998887 78999999987752 22
Q ss_pred eecccCCc-ceeEEEeccCCCEEEEEeCCCeEE-EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203 368 LHRNLHSS-AVMGVAGMQQKQIVLSAGADKRII-GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLY 445 (540)
Q Consensus 368 ~~~~~~~~-~v~~l~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 445 (540)
+ ..|.. .+..++|+ +|+.|++++.++.+. +||+..+...........+..+.|+|++ .+|++++.++.|++|
T Consensus 332 ~--~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG---~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 332 V--PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTV 405 (1045)
T ss_dssp C--SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEE
T ss_pred c--cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC---CEEEEECCCCeEEEE
Confidence 2 34666 89999999 999999999888899 9999887664444445678899999988 789999999999999
Q ss_pred ECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC----------cEEEEeccCCCCccccccccccccee
Q 009203 446 DIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP----------VIHLFDIRYSANKPSQSIRAHQKRVF 515 (540)
Q Consensus 446 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg----------~i~iwd~~~~~~~~~~~~~~h~~~i~ 515 (540)
|+.+++.... ..+|...+.+++|||||++|++++.++ .|++||+.+ ++ +..+..|...+.
T Consensus 406 d~~tg~~~~~-------~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~--g~-~~~l~~~~~~~~ 475 (1045)
T 1k32_A 406 DLETGKPTVI-------ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--RK-IFAATTENSHDY 475 (1045)
T ss_dssp ETTTCCEEEE-------EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--TE-EEECSCSSSBEE
T ss_pred ECCCCceEEe-------ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC--Cc-EEEeeCCCcccC
Confidence 9998764332 235777889999999999999887654 899999986 44 666777888899
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 516 KAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 516 ~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.++|+|||++|++++.++...+|+
T Consensus 476 ~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 476 APAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEECTTSCEEEEEESCCCCCEEC
T ss_pred CceEcCCCCEEEEEecccCCcCcc
Confidence 999999999999999888877775
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=4.9e-22 Score=191.73 Aligned_cols=271 Identities=10% Similarity=0.071 Sum_probs=184.2
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203 228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL 307 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~ 307 (540)
++++++ ++.++++++.++.|.+||..+++....+.. +....+..++|+|+|++++++. ..++.|.+||+
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~~~v~~---~~~~~i~~~d~ 72 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------PDKFGPGTAMMAPDNRTAYVLN---NHYGDIYGIDL 72 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-------SSCCSSCEEEECTTSSEEEEEE---TTTTEEEEEET
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-------CCCCCCceeEECCCCCEEEEEe---CCCCcEEEEeC
Confidence 456777 488999999999999999998776555432 1112477899999998665441 67899999999
Q ss_pred CCCCCceeEEeecCCCC---cccceeEEEEeCCCCCEEEEEecC------------CcEEEEecCCCCCccccceeeccc
Q 009203 308 NKTKGRACVTFLDDKPH---VKGIINSIIFLPWENPCFATGGSD------------HAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
.++ .....+..... ....+.+++|+| ++++|++++.+ +.|.+||+.+++........ .
T Consensus 73 ~t~---~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~ 145 (349)
T 1jmx_B 73 DTC---KNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF---P 145 (349)
T ss_dssp TTT---EEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE---E
T ss_pred CCC---cEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec---c
Confidence 876 33433332100 023378899999 99999888865 89999999886532212222 2
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCc-------------------------cEEEEeecCCC
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIES-------------------------KCMSVLPNPCD 427 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 427 (540)
+...+.+++|+|+|+ +++++. .|.+||+.+++.+....... ....+.+.+++
T Consensus 146 ~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 146 MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 344688999999999 665544 49999999888765443321 22233343322
Q ss_pred CC--------ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccC
Q 009203 428 FN--------LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 428 ~~--------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.. ..++......+.+.+|++. .+...+.+++|+| +|++|+++ ++.|.+||+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFA----------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEE----------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred cCCccccccceeEEEEeccCCcEEecccc----------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 00 0111122233334443331 2345688999999 99999988 88999999987
Q ss_pred CCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 499 SANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 499 ~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++.+..+.. ...+.+++|+|+|++|++++.++.|++||+
T Consensus 285 --~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 285 --RKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp --TEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred --CeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEec
Confidence 565555543 335789999999998888888999999985
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=3.2e-22 Score=188.03 Aligned_cols=254 Identities=11% Similarity=0.055 Sum_probs=179.0
Q ss_pred ecCCCCeEEEeccc----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-CCCcceeecccccCCCCC-CCC
Q 009203 203 TSASPATIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-RGSGASLLSTTDCLSPKH-RRW 276 (540)
Q Consensus 203 ~~~~d~~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~h-~~~ 276 (540)
..+.+++|.+|+.. ..+..|.+.|.+++|+|| +++|++++ ++.|.+||+.+ ++..... .+| ...
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~--------~~~~~~~ 86 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVD--------TGFATIC 86 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECC--------CTTCCCB
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEec--------ccccccc
Confidence 45678899999764 346779999999999996 88888887 78999999988 6543222 233 467
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEE--ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEEE
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVL--NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVVL 353 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~i 353 (540)
|.+++|+|+|++|+++.. ..++.+.|| ++.++. ...+.. ...+..++|+| +++.|+ +++.++.+.|
T Consensus 87 ~~~~~~spdg~~l~~~~~--~~~~~~~l~~~~~~~~~----~~~~~~----~~~~~~~~~sp-dg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDK--VEFGKSAIYLLPSTGGT----PRLMTK----NLPSYWHGWSP-DGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp CSCCEECTTSSEEEEEEC--TTTSSCEEEEEETTCCC----CEECCS----SSSEEEEEECT-TSSEEEEEEEETTEEEE
T ss_pred ccceEECCCCCEEEEEEe--CCCCcceEEEEECCCCc----eEEeec----CCCccceEECC-CCCEEEEEECCCCceEE
Confidence 899999999999999821 133445555 544431 233332 23488999999 888776 7888999999
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECC-CCCeeee-eccCccEEEEeecCCCCCc
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAG-VGRADFK-HQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 430 (540)
|+++.... .......+...+.+++|+|+|+.|++++ .++.+++|++. .+..... ......+..+.|+|++
T Consensus 156 ~~~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--- 228 (297)
T 2ojh_A 156 YSMDIDSG----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG--- 228 (297)
T ss_dssp EEEETTTC----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS---
T ss_pred EEEECCCC----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC---
Confidence 98643221 1122234778899999999999888766 58889999875 3333333 3344567788999987
Q ss_pred eEEEEEcCC-----------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203 431 FMVQTGTPG-----------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP 489 (540)
Q Consensus 431 ~~l~~~~~d-----------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg 489 (540)
.+|++++.+ +.|++||+.+++..... ...+|...+.+++|+|+|++|++++.+.
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF-----DLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE-----EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee-----ccCCCCcccccceECCCCCEEEEEEecc
Confidence 567666654 56999999877642211 2235677889999999999998887654
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=1.4e-21 Score=188.53 Aligned_cols=281 Identities=8% Similarity=0.036 Sum_probs=180.8
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH 324 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 324 (540)
++.|.+|+++........... ..+...+..++|+|+|+ |+++... +.++.|.+||+.++.. ..+..+..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~-----~~~~~~p~~~a~spdg~-l~~~~~~-~~~~~v~~~~~~~g~~-~~~~~~~~--- 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGL-----LAATQNPTYLALSAKDC-LYSVDKE-DDEGGIAAWQIDGQTA-HKLNTVVA--- 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEE-----EEECSCCCCEEECTTCE-EEEEEEE-TTEEEEEEEEEETTEE-EEEEEEEE---
T ss_pred CCCEEEEEEcCCCCeEEEeee-----eeccCCcceEEEccCCe-EEEEEec-CCCceEEEEEecCCcE-EEeeeeec---
Confidence 456888877643221111111 12335577899999999 5555110 2368999999976521 22333221
Q ss_pred cccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeeccc-------CCcceeEEEeccCCCEEEEEeCCC
Q 009203 325 VKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNL-------HSSAVMGVAGMQQKQIVLSAGADK 396 (540)
Q Consensus 325 ~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~v~~l~~s~~~~~l~~~~~dg 396 (540)
+...+..++|+| ++++|++++ .++.|.+|++...........+...+ +...+.+++|+|+|+++++...++
T Consensus 84 ~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred CCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 345688999999 999888877 67999999996432111111111111 123588999999999666666788
Q ss_pred eEEEEECC-CCCeeee----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccC---cccc
Q 009203 397 RIIGFDAG-VGRADFK----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESS---ESQS 468 (540)
Q Consensus 397 ~i~iwd~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~~~ 468 (540)
.|++||+. +++.... .........+.|+|++. .+++++..++.|.+|++................. ....
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~--~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ--YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCC--EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 99999998 4544321 22234567899999872 2555577889999999875221111110000111 1124
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEeccCC-CCcccccccccccceeEEEEcCCCCEEEEEEcC-CcEEEEe
Q 009203 469 ALINQSWSPDGLYIT-SGSADPVIHLFDIRYS-ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-LNIGLHK 539 (540)
Q Consensus 469 ~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~~-~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-g~v~iw~ 539 (540)
.+..++|+|||++|+ +...++.|.+|++... ....+..+..+...+.+++|+|||++|++++.+ +.|.+|+
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 588999999999874 5566899999999732 124455555666678999999999988888765 8999995
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=1.9e-22 Score=208.90 Aligned_cols=271 Identities=14% Similarity=0.080 Sum_probs=190.8
Q ss_pred ccCceEEEEEecCCCcEEEEEeC-CceEEEEEcCCCCCcceeecccccCCCCCC-CCceeEEEecCCCeEEEEeecCCCC
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSAL-DGVIRLWQLQSRGSGASLLSTTDCLSPKHR-RWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
+..+|++++|+|| |+.||+++. ||+++||++..++. ..+ ..|. ..+..++|+|| ++++++.. .+.+
T Consensus 20 ~~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~-~~l--------t~~~~~~~~~~~~spd-~~l~~~~~-~~g~ 87 (582)
T 3o4h_A 20 IAVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGET-VKL--------NREPINSVLDPHYGVG-RVILVRDV-SKGA 87 (582)
T ss_dssp HHSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEE-EEC--------CSSCCSEECEECTTCS-EEEEEEEC-STTS
T ss_pred hccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCc-Eee--------ecccccccccccCCCC-eEEEEecc-CCCC
Confidence 3568999999997 888888876 99999999855432 222 2333 57899999999 66666511 0125
Q ss_pred CeEEEEecCC--CCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 300 SQISVLNLNK--TKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 300 ~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
....+|.+.. .. ... .+.. ...+...+|+| +++ .+++.+.++.+.+||+.+++. ..+.. +..
T Consensus 88 ~~~~l~~~~~~~~g--~~~-~l~~----~~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~----~~l~~--~~~- 152 (582)
T 3o4h_A 88 EQHALFKVNTSRPG--EEQ-RLEA----VKPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGL----RELAR--LPG- 152 (582)
T ss_dssp CCEEEEEEETTSTT--CCE-ECTT----SCSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEE----EEEEE--ESS-
T ss_pred cceEEEEEeccCCC--ccc-cccC----CCCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcE----EEeec--CCC-
Confidence 5566665543 21 112 2222 11244668888 654 334444445566999988763 33322 222
Q ss_pred eeEEEeccCCCEEEEEeCC----CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC--eEEEEECCCC
Q 009203 377 VMGVAGMQQKQIVLSAGAD----KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRLR 450 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~ 450 (540)
.+++|+|||++|++++.+ +.|++||+.+++..........+..+.|+|++ .+|+++..++ .|++||+.++
T Consensus 153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGM---KVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTS---CEEEEEECSSCEEEEEECTTTC
T ss_pred -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCC---CEEEEccCCCeeEEEEEcCCCC
Confidence 889999999999988877 78999999988876555556778899999998 6788888888 8999999987
Q ss_pred cceeeeeccccccCccccCeEEEE--------EcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203 451 QTEIHAFGWKQESSESQSALINQS--------WSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS 522 (540)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~~~--------~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~ 522 (540)
+.. . +.+|...+..++ |+|||.++++++.||.+++|++ + +... .+.+.|.+++|+ +
T Consensus 229 ~~~-~-------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g--~~~~---~~~~~v~~~~~s-d 292 (582)
T 3o4h_A 229 SVE-D-------LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G--ERVE---APQGNHGRVVLW-R 292 (582)
T ss_dssp CEE-E-------CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T--EEEC---CCSSEEEEEEEE-T
T ss_pred cEE-E-------ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C--Ceec---cCCCceEEEEec-C
Confidence 654 1 134444555555 9999988999999999999999 2 2222 234678999999 9
Q ss_pred CCEEEEEEcCCc---EEEEe
Q 009203 523 HPLLISISSDLN---IGLHK 539 (540)
Q Consensus 523 ~~~l~s~~~dg~---v~iw~ 539 (540)
++++++++.+.. +.+|+
T Consensus 293 g~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 293 GKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp TEEEEEEEETTEEEEEEEET
T ss_pred CEEEEEEcCCCCCCeEEEEc
Confidence 999998887754 66665
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=4.2e-21 Score=190.14 Aligned_cols=320 Identities=9% Similarity=0.052 Sum_probs=194.6
Q ss_pred CeEEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCc-------ceeecccccCCCCCCCCceeE
Q 009203 208 ATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSG-------ASLLSTTDCLSPKHRRWPEDI 280 (540)
Q Consensus 208 ~~i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~-------~~~~~~~~~~~~~h~~~V~~~ 280 (540)
+.+++|+... ..+...++.++++++ +.++++|+.|+ ++||+....... .............|...|.++
T Consensus 23 ~~vri~~~~~--~~~~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 98 (434)
T 2oit_A 23 KKVRIFDSPE--ELPKERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHL 98 (434)
T ss_dssp CEEECSCCCS--SCCCSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEE
T ss_pred eeEEecCCcc--ccCCCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEE
Confidence 4566664321 123457899999995 78899999888 999876421100 000000000001356679999
Q ss_pred EEecCCCeEEEEeecCCCCCeEEEEecCCC-----CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 281 AWHPQGNSLFSAHTADSGDSQISVLNLNKT-----KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
+|+|+|++|++++..++.|+.|++||+.++ .....+..+.....|...|.+++|+|.++.+|++++.||+|++||
T Consensus 99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD 178 (434)
T 2oit_A 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ 178 (434)
T ss_dssp EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence 999999999931111289999999998754 111111122222247788999999994489999999999999999
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec--------cCccEEEEeecCCC
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ--------IESKCMSVLPNPCD 427 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~ 427 (540)
++++.. .....+|...|.+++|+|+|++|++|+.||.|++||++ +....... +...+.++.|++..
T Consensus 179 ~~~~~~-----~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 179 VTETVK-----VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp ESSSEE-----EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred cCCCcc-----eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 998753 22234588899999999999999999999999999998 44433221 12378899999865
Q ss_pred CCceEEE-EEcCCC------eEEEEECCCCcce--e---eeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEE
Q 009203 428 FNLFMVQ-TGTPGR------QLRLYDIRLRQTE--I---HAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLF 494 (540)
Q Consensus 428 ~~~~~l~-~~~~dg------~v~i~d~~~~~~~--~---~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iw 494 (540)
.+++ ....+| .+++|++...... . ..........+...+-..+.+-++.+++++++ ..+.|.|+
T Consensus 253 ---~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl 329 (434)
T 2oit_A 253 ---VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSIL 329 (434)
T ss_dssp ---EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEE
T ss_pred ---eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEE
Confidence 4443 344443 3999999865311 1 11111000112222333344446767666554 34445555
Q ss_pred eccCCC-----------Cccccccc--ccccceeEEEEc---------------CCCCEEEEEEcCCcEEEEeC
Q 009203 495 DIRYSA-----------NKPSQSIR--AHQKRVFKAVWH---------------YSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 495 d~~~~~-----------~~~~~~~~--~h~~~i~~l~~s---------------~~~~~l~s~~~dg~v~iw~l 540 (540)
...... .+....+. .......++++. |-...|..-+.||.+..|.+
T Consensus 330 ~~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~ 403 (434)
T 2oit_A 330 ARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYM 403 (434)
T ss_dssp EECTTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEE
T ss_pred EecCCCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEE
Confidence 433210 01111111 112233444432 22367888899999999974
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=7.4e-20 Score=177.52 Aligned_cols=286 Identities=10% Similarity=0.063 Sum_probs=181.5
Q ss_pred CcEEEEEe----CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC
Q 009203 236 EQLFVTSA----LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK 311 (540)
Q Consensus 236 ~~~l~tg~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~ 311 (540)
..+++.|+ .++.|.+|.+............ . +...+..++|+|+|++|+++...+..++.|.+|++....
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~-----~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSD-----A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEE-----E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeec-----c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence 44566664 3568999987543211122111 1 345577899999999998882111124899999987531
Q ss_pred C-ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeec-c--------cCCcceeEE
Q 009203 312 G-RACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHR-N--------LHSSAVMGV 380 (540)
Q Consensus 312 ~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~-~--------~~~~~v~~l 380 (540)
. ...+..... +...+..+++ ++++|++++ .++.|.+|++.............. . .+...+.++
T Consensus 87 g~~~~~~~~~~---~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (361)
T 3scy_A 87 GTLHLLNTQKT---MGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV 160 (361)
T ss_dssp TEEEEEEEEEC---SSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE
T ss_pred CcEEEeeEecc---CCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE
Confidence 1 122333221 2344667777 556665555 688999999976443222211111 1 123346889
Q ss_pred EeccCCCEEEEEe-CCCeEEEEECCCCCe--------------eeeeccCccEEEEeecCCCCCceEEEEEc-CCCeEEE
Q 009203 381 AGMQQKQIVLSAG-ADKRIIGFDAGVGRA--------------DFKHQIESKCMSVLPNPCDFNLFMVQTGT-PGRQLRL 444 (540)
Q Consensus 381 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~i 444 (540)
+|+|+|+++++++ .++.|.+|++..... ............+.|+|++ .++++++ .++.|.+
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~v~~~~~~~v~v 237 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG---KFAYLINEIGGTVIA 237 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS---SEEEEEETTTCEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC---CEEEEEcCCCCeEEE
Confidence 9999999776655 488999998875431 1223345567789999988 4555444 7899999
Q ss_pred EECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEeccCCCCc--ccccccccccceeEEEEc
Q 009203 445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA--DPVIHLFDIRYSANK--PSQSIRAHQKRVFKAVWH 520 (540)
Q Consensus 445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~--dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~l~~s 520 (540)
||+.++...... .......+...+..++|+|||++|+++.. ++.|.+|+++...+. .+..+.. ...+.+++|+
T Consensus 238 ~~~~~g~~~~~~--~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s 314 (361)
T 3scy_A 238 FRYADGMLDEIQ--TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT 314 (361)
T ss_dssp EEEETTEEEEEE--EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred EEecCCceEEeE--EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence 999865421111 11122344456789999999999876665 489999999732133 3444443 4568899999
Q ss_pred CCCCEEEEEE-cCCcEEEEe
Q 009203 521 YSHPLLISIS-SDLNIGLHK 539 (540)
Q Consensus 521 ~~~~~l~s~~-~dg~v~iw~ 539 (540)
|||++|++++ .++.|.+|+
T Consensus 315 pdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 315 PNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp TTSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEE
Confidence 9999888887 678999975
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=3e-21 Score=204.81 Aligned_cols=284 Identities=11% Similarity=0.044 Sum_probs=189.5
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCc-ceeeccccc---------CCCCCCCCceeEEEecCCCeEEEEeec
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSG-ASLLSTTDC---------LSPKHRRWPEDIAWHPQGNSLFSAHTA 295 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~-~~~~~~~~~---------~~~~h~~~V~~~~~~~~~~~l~s~~~~ 295 (540)
+..+.|. +..+++++.|+ | +||+.+++.. ..+...... ....+...|.+++|+|| ..++.+
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~--- 98 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF--- 98 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE---
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE---
Confidence 5557787 33566667788 8 9999988763 333221100 00111256999999999 666554
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC-----CCCccccceeec
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD-----AEDSWKPKALHR 370 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~ 370 (540)
.++.|++||+.++ ....... +...+.+++|+| +++.|+++ .|+.|++||+.+ ++. ..+..
T Consensus 99 --~~~~i~~~d~~~~---~~~~l~~----~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~----~~~~~ 163 (706)
T 2z3z_A 99 --TQGGLVGFDMLAR---KVTYLFD----TNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRA----IAVTI 163 (706)
T ss_dssp --ETTEEEEEETTTT---EEEEEEC----CTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCC----EESCS
T ss_pred --ECCEEEEEECCCC---ceEEccC----CcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCc----EEecc
Confidence 3599999999875 3333332 245688899999 99999885 679999999988 653 22211
Q ss_pred ccCC-------------cceeEEEeccCCCEEEEEe---------------------------------CCCeEEEEECC
Q 009203 371 NLHS-------------SAVMGVAGMQQKQIVLSAG---------------------------------ADKRIIGFDAG 404 (540)
Q Consensus 371 ~~~~-------------~~v~~l~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~ 404 (540)
..+. ..+.+++|+|||++|++++ .+..|++||+.
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~ 243 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA 243 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence 1111 1258999999999999987 44679999999
Q ss_pred CCCeeeee---ccCccEEEEeecCCCCCceEEEEEcCCC-----eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 405 VGRADFKH---QIESKCMSVLPNPCDFNLFMVQTGTPGR-----QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 405 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
+++..... .....+..+.|+|++ ..|++++.++ .|++||+.++......... ........+.+++|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 244 TGKTVYLQTGEPKEKFLTNLSWSPDE---NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE--TDKHYVEPLHPLTFL 318 (706)
T ss_dssp TTEEEECCCCSCTTCEEEEEEECTTS---SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE--ECSSCCCCCSCCEEC
T ss_pred CCceEeeccCCCCceeEeeEEEECCC---CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc--cCCCeECccCCceee
Confidence 88764433 234567899999988 5777766665 8999999987322222110 001111234678999
Q ss_pred C--CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE-EEEcCCCCEEEEEEcC-C----cEEEEe
Q 009203 477 P--DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK-AVWHYSHPLLISISSD-L----NIGLHK 539 (540)
Q Consensus 477 p--~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~d-g----~v~iw~ 539 (540)
| ||++|++++.||.++||.++.. +..+..+..|...+.. ++|+|+|+.|+.++.+ + .|..||
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTT-GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETT-SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred cCCCCEEEEEEccCCccEEEEEECC-CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 9 9999999999999999998732 5566677777777877 7999999977666544 3 455554
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1e-20 Score=181.52 Aligned_cols=276 Identities=10% Similarity=0.056 Sum_probs=189.1
Q ss_pred EEecCCCCeEEEeccc-----hhcc-cccC-ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 201 VRTSASPATIHCHTSN-----HVSS-LHKR-KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~-----~~~~-~h~~-~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
+.++..++.|.+|+.. ..+. ++.. .+.+++|+||+..++++++.++.|.+||+.+++....+..... ..|
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~ 80 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---EER 80 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---TEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc---ccc
Confidence 5566778899999764 1122 3322 4889999997334556777789999999998876554432110 002
Q ss_pred CCCceeEEEecCCCeEEEEeec-----CC---CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTA-----DS---GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATG 345 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~-----~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 345 (540)
...+.+++|+|+|++|+++... +. .++.|.+||+.++ .....+.. ...+.+++|+| ++++|+++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~----~~~~~~~~~s~-dg~~l~~~ 152 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFEA----PRQITMLAWAR-DGSKLYGL 152 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEEC----CSSCCCEEECT-TSSCEEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC---cEEEEEeC----CCCcceeEECC-CCCEEEEe
Confidence 2357889999999998887100 00 5799999999875 34444442 23478899999 88888777
Q ss_pred ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC------------------------eEEEE
Q 009203 346 GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK------------------------RIIGF 401 (540)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg------------------------~i~iw 401 (540)
++.|.+||+.+++.. ..+.. +. ....+.|+|+|..++..+..+ .|.+|
T Consensus 153 --~~~i~~~d~~~~~~~---~~~~~--~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLV---EDKPI--QS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp --SSSEEEEETTTTEEE---EEECS--TT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred --CCeEEEEECCCCcEe---eeeec--cc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence 688999999987642 22211 11 112347889888766544322 47899
Q ss_pred ECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203 402 DAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG 479 (540)
Q Consensus 402 d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 479 (540)
|+.+++.... .........+.++|++ .+++++ ++.|.+||+.+++...... ....+.+++|+|+|
T Consensus 225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~--~~~v~~~d~~~~~~~~~~~--------~~~~~~~~~~s~dg 291 (337)
T 1pby_B 225 DLETGEMAMREVRIMDVFYFSTAVNPAK---TRAFGA--YNVLESFDLEKNASIKRVP--------LPHSYYSVNVSTDG 291 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTS---SEEEEE--ESEEEEEETTTTEEEEEEE--------CSSCCCEEEECTTS
T ss_pred eCCCCCceEeecCCCCCceeeEEECCCC---CEEEEe--CCeEEEEECCCCcCcceec--------CCCceeeEEECCCC
Confidence 9998876421 2233456789999987 567666 7999999998876433211 12357899999999
Q ss_pred CEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203 480 LYITSGSADPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 480 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
++|++++.++.|.+||+.+ ++.+..+..+
T Consensus 292 ~~l~~~~~~~~i~v~d~~~--~~~~~~~~~~ 320 (337)
T 1pby_B 292 STVWLGGALGDLAAYDAET--LEKKGQVDLP 320 (337)
T ss_dssp CEEEEESBSSEEEEEETTT--CCEEEEEECG
T ss_pred CEEEEEcCCCcEEEEECcC--CcEEEEEEcC
Confidence 9999999999999999987 5666666544
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=2.4e-20 Score=179.94 Aligned_cols=259 Identities=11% Similarity=0.086 Sum_probs=171.2
Q ss_pred ccccCceEEEEEecCCCcEEEEEeC--CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSAL--DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
..+...+..++|+|| |++++++.. ++.|.+|++..+... .+ ... ..+...+..++|+|+|++|+++. .
T Consensus 36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~-~~-~~~----~~~~~~p~~~a~spdg~~l~~~~---~ 105 (347)
T 3hfq_A 36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAH-KL-NTV----VAPGTPPAYVAVDEARQLVYSAN---Y 105 (347)
T ss_dssp EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEE-EE-EEE----EEESCCCSEEEEETTTTEEEEEE---T
T ss_pred eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEE-Ee-eee----ecCCCCCEEEEECCCCCEEEEEe---C
Confidence 356677889999996 775444432 689999999765421 11 110 13456688999999999888871 3
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCC------cccceeEEEEeCCCCCEEEEEecCCcEEEEecC-CCCCccccceeec
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPH------VKGIINSIIFLPWENPCFATGGSDHAVVLWSER-DAEDSWKPKALHR 370 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~ 370 (540)
.++.|.+|++........+..+..... ....+.+++|+| ++++++++..++.|.+||+. ++.. .....+.
T Consensus 106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~-~~~~~~~- 182 (347)
T 3hfq_A 106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQL-SEQSVLT- 182 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCE-EEEEEEE-
T ss_pred CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcE-EEeeeEE-
Confidence 789999999964322233333322110 123488999999 88877777778899999998 4432 1011111
Q ss_pred ccCCcceeEEEeccCCCEEEE-EeCCCeEEEEECCC--CCeee--eec-c------CccEEEEeecCCCCCceEE-EEEc
Q 009203 371 NLHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDAGV--GRADF--KHQ-I------ESKCMSVLPNPCDFNLFMV-QTGT 437 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~~~--~~~~~--~~~-~------~~~~~~~~~~~~~~~~~~l-~~~~ 437 (540)
......+..++|+|+|+++++ +..++.|.+|++.. ++... ... . ...+..++|+|++ .+| +++.
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG---~~l~v~~~ 259 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG---HFLYVSNR 259 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS---CEEEEEEE
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC---CEEEEEeC
Confidence 112346788999999996665 55688999999874 44321 111 1 1457789999988 455 6667
Q ss_pred CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccC
Q 009203 438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRY 498 (540)
Q Consensus 438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~ 498 (540)
.++.|.+||+........ ...+..+...+.+++|+|||++|++++. ++.|.+|+++.
T Consensus 260 ~~~~v~v~~~~~~g~~~~----~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 260 GYNTLAVFAVTADGHLTL----IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp TTTEEEEEEECGGGCEEE----EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEEECCCCcEEE----eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 789999999974321111 1122334556889999999999888775 48999997654
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.5e-19 Score=175.40 Aligned_cols=295 Identities=9% Similarity=0.067 Sum_probs=185.5
Q ss_pred CCCeEEEeccc-------hhcccccCceEEEEEecCCCcEEEEEeCC----ceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203 206 SPATIHCHTSN-------HVSSLHKRKLRSLSLNPVNEQLFVTSALD----GVIRLWQLQSRGSGASLLSTTDCLSPKHR 274 (540)
Q Consensus 206 ~d~~i~~~~~~-------~~~~~h~~~V~~l~~spd~~~~l~tg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~ 274 (540)
.+..|.+|... .+...|...+..++|+|| +++|++++.+ +.|.+|++............. ..+.
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~----~~~~ 99 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ----KTMG 99 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE----ECSS
T ss_pred CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe----ccCC
Confidence 45667776332 111126788899999996 8888888875 799999987642111111111 1233
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce-eEEe--ecCCC-----CcccceeEEEEeCCCCCEEEEEe
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA-CVTF--LDDKP-----HVKGIINSIIFLPWENPCFATGG 346 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~-~~~~--~~~~~-----~~~~~v~~~~~~p~~~~~l~s~~ 346 (540)
..+..+++ ++++|+++. ..++.|.+|++....... .... ..+.. .+...+.+++|+| +++++++++
T Consensus 100 ~~p~~~~~--dg~~l~~~~---~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~ 173 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTAN---YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADD 173 (361)
T ss_dssp SCEEEEEE--CSSEEEEEE---TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEE
T ss_pred CCcEEEEE--CCCEEEEEE---CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEe
Confidence 45667777 788777761 578999999997542211 1111 11100 1123468899999 888665554
Q ss_pred -cCCcEEEEecCCCCC------cccc--ceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeee--ec-
Q 009203 347 -SDHAVVLWSERDAED------SWKP--KALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFK--HQ- 413 (540)
Q Consensus 347 -~dg~i~iwd~~~~~~------~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~- 413 (540)
.++.|.+|++..... +... .......+...+..++|+|+|+++++++ .++.|.+||+.++..... ..
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~ 253 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA 253 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES
T ss_pred CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec
Confidence 578999999876441 1000 0111122455678999999999888777 689999999987654221 11
Q ss_pred ---cCccEEEEeecCCCCCceEEEEEc-C-CCeEEEEECCC--CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203 414 ---IESKCMSVLPNPCDFNLFMVQTGT-P-GRQLRLYDIRL--RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 414 ---~~~~~~~~~~~~~~~~~~~l~~~~-~-dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
.......+.|+|++ .+|+++. . ++.|.+|++.. +.... .. .+.. ...+.+++|+|+|++|++++
T Consensus 254 ~~~~~~~~~~i~~spdg---~~l~v~~~~~~~~i~v~~~~~~~g~~~~--~~---~~~~-g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 254 DTVNAQGSGDIHLSPDG---KYLYASNRLKADGVAIFKVDETNGTLTK--VG---YQLT-GIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp CSSCCCCEEEEEECTTS---SEEEEEECSSSCEEEEEEECTTTCCEEE--EE---EEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred CCCCCCCcccEEECCCC---CEEEEECCCCCCEEEEEEEcCCCCcEEE--ee---EecC-CCCCceEEECCCCCEEEEEE
Confidence 12345689999988 5665544 4 58999999963 33211 11 1111 34678999999999988887
Q ss_pred -CCCcEEEEeccCCCCcccccc-cccccceeEEEEc
Q 009203 487 -ADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWH 520 (540)
Q Consensus 487 -~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s 520 (540)
.++.|.+|+++...++..... ..+...+.|+.|.
T Consensus 325 ~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 325 RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 678999987764334443332 2345578899885
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=5.5e-21 Score=203.16 Aligned_cols=281 Identities=10% Similarity=-0.013 Sum_probs=186.6
Q ss_pred EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC---CCceeEEEecCCCeEEEEeecC-----CC
Q 009203 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR---RWPEDIAWHPQGNSLFSAHTAD-----SG 298 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~---~~V~~~~~~~~~~~l~s~~~~~-----~~ 298 (540)
.+++|+|| +.++++ +.|++|++||+.+++....+. +|. ..|.+++|+|||++|++++..+ +.
T Consensus 19 ~~~~~s~d-g~~~~~-~~d~~i~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 19 FFPNWISG-QEYLHQ-SADNNIVLYNIETGQSYTILS--------NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCCEESSS-SEEEEE-CTTSCEEEEESSSCCEEEEEC--------HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred CccEECCC-CeEEEE-cCCCCEEEEEcCCCcEEEEEc--------cccccccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 37899997 665555 469999999999887543331 221 2478999999999999882110 11
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc--
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA-- 376 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-- 376 (540)
++.|++||+.++ ..+..... ...+..++|+| +|+.|+++. ++.|++||+.+++. ..+...++...
T Consensus 89 ~~~i~~~d~~~g---~~~~~~~l----~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~----~~l~~~~~~~~v~ 155 (719)
T 1z68_A 89 TATYYIYDLSNG---EFVRGNEL----PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPP----FQITFNGRENKIF 155 (719)
T ss_dssp EEEEEEEETTTT---EECCSSCC----CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCC----EECCCCCBTTTEE
T ss_pred ceEEEEEECCCC---ccccceec----CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCc----EEEecCCCcCCeE
Confidence 689999999976 22100111 23588999999 999999886 78999999988764 22222222222
Q ss_pred ---------------eeEEEeccCCCEEEEEeCCC----------------------------------eEEEEECCCCC
Q 009203 377 ---------------VMGVAGMQQKQIVLSAGADK----------------------------------RIIGFDAGVGR 407 (540)
Q Consensus 377 ---------------v~~l~~s~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~ 407 (540)
..+++|+|||+.|++++.|. .|++||+.+++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 25899999999999987652 78999999876
Q ss_pred ee---ee------eccCccEEEEeecCCCCCceEEEEEcC--C--CeEEEEE----CCCCcceeeeeccccccCccccCe
Q 009203 408 AD---FK------HQIESKCMSVLPNPCDFNLFMVQTGTP--G--RQLRLYD----IRLRQTEIHAFGWKQESSESQSAL 470 (540)
Q Consensus 408 ~~---~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~--d--g~v~i~d----~~~~~~~~~~~~~~~~~~~~~~~v 470 (540)
.. .. ......+..+.|+|++ .++++... + ..|.+|| +.+++...... ....+|...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~---~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~---~~~~~~~~~~ 309 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVTDE---RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE---HIEESRTGWA 309 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESSSS---EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE---EEEECSSSCS
T ss_pred ccceeEccCCccCCCCcceEEEeEEeCCC---eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe---cccccCCceE
Confidence 42 11 1234567889999986 56666332 2 3488899 76654322100 0002455555
Q ss_pred E-----EEEEcCCCCEEEE--EeCCC--cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC-----CcEE
Q 009203 471 I-----NQSWSPDGLYITS--GSADP--VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-----LNIG 536 (540)
Q Consensus 471 ~-----~~~~sp~g~~l~s--g~~dg--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-----g~v~ 536 (540)
. .+.|+|||+.|+. +..+| .|++||+.. +. ...+..+...+..+.++ +++.|+..+.+ +.++
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~--~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~ 385 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV--EN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRN 385 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS--TT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBE
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC--Cc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEE
Confidence 5 7899999996554 44555 466667664 33 44555556668888777 88877766655 7888
Q ss_pred EEeC
Q 009203 537 LHKI 540 (540)
Q Consensus 537 iw~l 540 (540)
+|.+
T Consensus 386 l~~~ 389 (719)
T 1z68_A 386 IYRI 389 (719)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8863
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=3e-20 Score=197.48 Aligned_cols=304 Identities=8% Similarity=-0.007 Sum_probs=198.9
Q ss_pred CCCeEEEeccc-----hhcccccC---ceEEEEEecCCCcEEEEEeC---------CceEEEEEcCCCCCcceeeccccc
Q 009203 206 SPATIHCHTSN-----HVSSLHKR---KLRSLSLNPVNEQLFVTSAL---------DGVIRLWQLQSRGSGASLLSTTDC 268 (540)
Q Consensus 206 ~d~~i~~~~~~-----~~~~~h~~---~V~~l~~spd~~~~l~tg~~---------dg~v~iw~~~~~~~~~~~~~~~~~ 268 (540)
.|++|++|+.. .++.+|.. .|.+++|||| |++|++++. ++.|++||+.+++......
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~----- 107 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE----- 107 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-----
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-----
Confidence 47899999754 33455544 4999999996 888888876 7899999998876421010
Q ss_pred CCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCccc-----------------ceeE
Q 009203 269 LSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKG-----------------IINS 331 (540)
Q Consensus 269 ~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-----------------~v~~ 331 (540)
....+..++|+|||+.|+++ .++.|++||+.++.. ...... .+.. ...+
T Consensus 108 ----l~~~~~~~~~SPDG~~la~~-----~~~~i~~~~~~~g~~---~~l~~~--~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 108 ----LPRPIQYLCWSPVGSKLAYV-----YQNNIYLKQRPGDPP---FQITFN--GRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp ----CCSSBCCEEECSSTTCEEEE-----ETTEEEEESSTTSCC---EECCCC--CBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred ----cCcccccceECCCCCEEEEE-----ECCeEEEEeCCCCCc---EEEecC--CCcCCeEcccccceeeeecccCccc
Confidence 01347889999999999997 478999999987632 222211 1111 1258
Q ss_pred EEEeCCCCCEEEEEecCC----------------------------------cEEEEecCCCCCccccce---eecccCC
Q 009203 332 IIFLPWENPCFATGGSDH----------------------------------AVVLWSERDAEDSWKPKA---LHRNLHS 374 (540)
Q Consensus 332 ~~~~p~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~---~~~~~~~ 374 (540)
++|+| ||+.|++++.|. .|++||+.+++....... ....+|.
T Consensus 174 ~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 174 LWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp EEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred EEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 99999 999999987652 788999988763100000 0113477
Q ss_pred cceeEEEeccCCCEEEEEeCC----CeEEEEE----CCCCCeeeee-----ccCccEE-----EEeecCCCCCceEEEEE
Q 009203 375 SAVMGVAGMQQKQIVLSAGAD----KRIIGFD----AGVGRADFKH-----QIESKCM-----SVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~l~~~ 436 (540)
..+.+++|+||++++++.... ..|.+|| +.+++..... .....+. .+.|+|++.. .++++.
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~ 331 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS-YYKIFS 331 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC-EEEEEE
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCe-EEEEEE
Confidence 889999999998877764432 2488999 7776654333 2233333 6788998743 133345
Q ss_pred cCCC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCc-cccc--
Q 009203 437 TPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANK-PSQS-- 506 (540)
Q Consensus 437 ~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~-~~~~-- 506 (540)
..+| .|.+||+.++.. . .+..+...+..+.++ +++.|+..+.+ +.+++|.+....+. ....
T Consensus 332 ~~~g~~~l~~~~~~~~~~--~------~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 332 DKDGYKHIHYIKDTVENA--I------QITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp CTTSCEEEEEESSCSTTC--E------ECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS
T ss_pred ccCCceEEEEEECCCCce--E------ecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc
Confidence 4555 577777766542 1 223445567787777 88877766554 88999988752121 1122
Q ss_pred --ccccccceeEEEEcCCCCEEEEE-EcC--CcEEEEeC
Q 009203 507 --IRAHQKRVFKAVWHYSHPLLISI-SSD--LNIGLHKI 540 (540)
Q Consensus 507 --~~~h~~~i~~l~~s~~~~~l~s~-~~d--g~v~iw~l 540 (540)
+.+|...+..+.|+|++++++.. +.+ ..+.+||+
T Consensus 403 ~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 403 CHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp TTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred CccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 23366678899999999877643 333 35667763
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.1e-19 Score=173.55 Aligned_cols=244 Identities=10% Similarity=0.017 Sum_probs=176.5
Q ss_pred CceeEEEecCCCeEEEEeecCC---CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCE-EEEEecCCcE
Q 009203 276 WPEDIAWHPQGNSLFSAHTADS---GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC-FATGGSDHAV 351 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i 351 (540)
.+..++|+|+|++|+++...+. .++.|.+||..+++ .+..+.. ...+.+++|+| +++. ++++..++.|
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~----~~~~~~~~~s~-dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE---VTQAIHN----DLKPFGATINN-TTQTLWFGNTVNSAV 113 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC---EEEEEEE----SSCCCSEEEET-TTTEEEEEETTTTEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe---EEEEEec----CCCcceEEECC-CCCEEEEEecCCCEE
Confidence 4678999999998888721100 16789999999873 3444332 23477899999 8875 4555667999
Q ss_pred EEEecCCCCCccccceeecccC-------CcceeEEEeccCCCEEEEEe--CCCeEEEEECCCCCeeeeec-cCccEEEE
Q 009203 352 VLWSERDAEDSWKPKALHRNLH-------SSAVMGVAGMQQKQIVLSAG--ADKRIIGFDAGVGRADFKHQ-IESKCMSV 421 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~~~~-------~~~v~~l~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 421 (540)
.+||..+++.. ..+..... ...+.+++|+|+|+.+++++ .++.|.+||+.+++.+.... .......+
T Consensus 114 ~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 114 TAIDAKTGEVK---GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL 190 (353)
T ss_dssp EEEETTTCCEE---EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred EEEeCCCCeeE---EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence 99999988752 22221100 11278899999999888776 47899999999988877665 44557788
Q ss_pred eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCC
Q 009203 422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSA 500 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~ 500 (540)
.++|++ .++++++.++.|.+||+.+++...... . ...++...+.+++|+|+|++|++++. ++.|.+||+.+
T Consensus 191 ~~s~dg---~~l~~~~~~~~i~~~d~~~~~~~~~~~-~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-- 262 (353)
T 3vgz_A 191 ALDSEG---KRLYTTNADGELITIDTADNKILSRKK-L--LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-- 262 (353)
T ss_dssp EEETTT---TEEEEECTTSEEEEEETTTTEEEEEEE-C--CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT--
T ss_pred EECCCC---CEEEEEcCCCeEEEEECCCCeEEEEEE-c--CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC--
Confidence 899987 578888889999999999876543221 0 11234557889999999998776654 59999999987
Q ss_pred CcccccccccccceeEEEEcCCCCEEEEEE-cCCcEEEEeC
Q 009203 501 NKPSQSIRAHQKRVFKAVWHYSHPLLISIS-SDLNIGLHKI 540 (540)
Q Consensus 501 ~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~-~dg~v~iw~l 540 (540)
++.+..+..+. ...++|+|+|++++.++ .++.|.+||+
T Consensus 263 ~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 263 GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 56666555433 36799999999665555 7899999985
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=1.5e-19 Score=175.62 Aligned_cols=250 Identities=10% Similarity=0.036 Sum_probs=165.5
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecC-CCCCceeEEeecCCCCcccceeEEEEeCCCCCE--EEEEe-----
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN-KTKGRACVTFLDDKPHVKGIINSIIFLPWENPC--FATGG----- 346 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l~s~~----- 346 (540)
..+..++|+|+|++|+++ +.+ .|.+|++. ++ ........ .. .+.+.+++|+| ++++ ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~----~~~-~v~~~~~~~~g---~~~~~~~~-~~-~g~~~~~~~sp-dg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGA----AMK-KWSSFAVKSPT---EIVHEASH-PI-GGHPRANDADT-NTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCCSEEEECTTSSEEEEE----EBT-EEEEEEEEETT---EEEEEEEE-EC-CSSGGGGCTTS-CCEEEEEEECSSTTCC
T ss_pred CCCcEEEECCCCCEEEEE----ccc-eEEEEEECCCC---CEEEeeEe-ec-CCCCccEEECC-CCCEEEEEEecCCcce
Confidence 457789999999999887 556 99999997 54 22222211 00 12355689999 8884 44543
Q ss_pred --------cCCcEEEEecCC-CCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECC-CCCeee--eec
Q 009203 347 --------SDHAVVLWSERD-AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAG-VGRADF--KHQ 413 (540)
Q Consensus 347 --------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~-~~~~~~--~~~ 413 (540)
.++.+.+|++.. ++.......+. ..+...+.+++|+|+|++++++.. ++.|++||+. +++... ...
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 187 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYE-YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD 187 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEE-eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence 689999999974 44211111110 124567899999999998887664 6799999998 676532 222
Q ss_pred ---cCccEEEEeecCCCCCceEEEEEc-CCCeEEEEECC--CCccee--eeec-cccccCcccc------CeEEEE-EcC
Q 009203 414 ---IESKCMSVLPNPCDFNLFMVQTGT-PGRQLRLYDIR--LRQTEI--HAFG-WKQESSESQS------ALINQS-WSP 477 (540)
Q Consensus 414 ---~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~--~~~~~~--~~~~-~~~~~~~~~~------~v~~~~-~sp 477 (540)
.......+.|+|++ .++++++ .++.|.+|++. ++.... ..+. ......+|.. .+..++ |+|
T Consensus 188 ~~~~g~~p~~~~~spdg---~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp 264 (365)
T 1jof_A 188 APDPGDHPRWVAMHPTG---NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF 264 (365)
T ss_dssp CSSTTCCEEEEEECTTS---SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred cCCCCCCCCEeEECCCC---CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence 14567889999988 5665554 57899999876 333211 1111 1111123332 588999 999
Q ss_pred CCCEEEEEeCCC------cEEEEeccCCCCcccc---cccccccceeEEEEcC---CCCEEEEEEcC-CcEEEEeC
Q 009203 478 DGLYITSGSADP------VIHLFDIRYSANKPSQ---SIRAHQKRVFKAVWHY---SHPLLISISSD-LNIGLHKI 540 (540)
Q Consensus 478 ~g~~l~sg~~dg------~i~iwd~~~~~~~~~~---~~~~h~~~i~~l~~s~---~~~~l~s~~~d-g~v~iw~l 540 (540)
||++|++++.+. .|.+|++... ++... ....+...+..++|+| ||++|++++.+ +.|.||++
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCC-CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 999988765432 8999999731 44332 1333445678899999 89999998865 89999974
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=1.3e-19 Score=177.56 Aligned_cols=284 Identities=9% Similarity=0.007 Sum_probs=184.7
Q ss_pred ccccCceEE-----EEEecCCCcEEEEEeC-Cce--EEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEE
Q 009203 220 SLHKRKLRS-----LSLNPVNEQLFVTSAL-DGV--IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFS 291 (540)
Q Consensus 220 ~~h~~~V~~-----l~~spd~~~~l~tg~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s 291 (540)
..|...... .+|+|| |++|+.++. +|. |.+||+.+++..... .++...+..++|+|||+.|+.
T Consensus 27 t~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt--------~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 27 TPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNTQVATQLT--------EGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp SCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTCEEEECC--------CSSCBCSSSCEECTTSSEEEE
T ss_pred cCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCCCceEEee--------eCCCCCccceEEcCCCCEEEE
Confidence 445555555 889997 887887776 674 777888776532222 345555667899999999999
Q ss_pred EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEE--EEeCCCCCEEEEEe----------------------c
Q 009203 292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI--IFLPWENPCFATGG----------------------S 347 (540)
Q Consensus 292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~~~~l~s~~----------------------~ 347 (540)
+ +.++.|++||+.++.. ...... +...+... .++| ++.+++... .
T Consensus 98 ~----~~~~~l~~~d~~~g~~---~~~~~~---~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 98 V----KDGRNLMRVDLATLEE---NVVYQV---PAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp E----ETTTEEEEEETTTCCE---EEEEEC---CTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred E----eCCCeEEEEECCCCcc---eeeeec---hhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCC
Confidence 8 7889999999998732 222222 12334333 3478 888877432 3
Q ss_pred CCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCC------CeEEEEECCCCCeeeeeccC--ccE
Q 009203 348 DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGAD------KRIIGFDAGVGRADFKHQIE--SKC 418 (540)
Q Consensus 348 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~--~~~ 418 (540)
+..|++||+.+++. ..+. .+...+..+.|+| +|+.|+.+..+ ..|.++|+..+......... ..+
T Consensus 167 ~~~l~~~d~~~g~~----~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 167 CCRLMRVDLKTGES----TVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC 240 (388)
T ss_dssp CEEEEEEETTTCCE----EEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred cceEEEEECCCCce----EEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence 46799999998863 3333 2556789999999 99998887763 37888898766543333322 346
Q ss_pred EEEeecCCCCCceEEEEEcC-C---CeEEEEECCCCcceeeeeccccccCcccc---CeEEEEEcCCCCEEEEE------
Q 009203 419 MSVLPNPCDFNLFMVQTGTP-G---RQLRLYDIRLRQTEIHAFGWKQESSESQS---ALINQSWSPDGLYITSG------ 485 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~-d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~sg------ 485 (540)
....|+|++.. ++++... + ..|++||+.+++..... ...++.. ....+.|+|||+.|+..
T Consensus 241 ~~~~~spdg~~--l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 313 (388)
T 3pe7_A 241 THEFWVPDGSA--LVYVSYLKGSPDRFIYSADPETLENRQLT-----SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG 313 (388)
T ss_dssp EEEEECTTSSC--EEEEEEETTCCCEEEEEECTTTCCEEEEE-----EECCEEEEEECTTSSEEEEEECCC---------
T ss_pred ccceECCCCCE--EEEEecCCCCCcceEEEEecCCCceEEEE-----cCCCceeeeecCCCCeEccCCCcceeEeeeccc
Confidence 67889998842 2232222 2 24999999987642211 1111100 01223799999988754
Q ss_pred ---eCCCcEEEEeccCCCCccccccccccc-----------ceeEEEEcCCCCEEEEEE-cCCcEEEEe
Q 009203 486 ---SADPVIHLFDIRYSANKPSQSIRAHQK-----------RVFKAVWHYSHPLLISIS-SDLNIGLHK 539 (540)
Q Consensus 486 ---~~dg~i~iwd~~~~~~~~~~~~~~h~~-----------~i~~l~~s~~~~~l~s~~-~dg~v~iw~ 539 (540)
..+..|++||+.+ +. +..+..|.. .+.+++|+|||+.|+.++ .+|...||.
T Consensus 314 ~~~~~~~~i~~~d~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 314 YKIENDPFLYVFNMKN--GT-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp ---CCCCEEEEEETTT--TE-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred cccCCCCEEEEEeccC--Cc-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 4567899999986 33 344555554 578899999999877665 567777775
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=9.4e-20 Score=180.46 Aligned_cols=215 Identities=10% Similarity=-0.015 Sum_probs=150.9
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-------ceeEEeecC--CCCcccceeEEEEeCCCCCEEE--
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-------RACVTFLDD--KPHVKGIINSIIFLPWENPCFA-- 343 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~-- 343 (540)
..++.+++++++.+++++ +.++ +++|+...... ...+..... ...+.+.|.+++|+| ++++|+
T Consensus 37 ~~~n~lavs~~~~~l~~~----~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAG----GASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTTEEEEE----ETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred CCccEEEEecCCCEEEEE----CCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEE
Confidence 347889999999999998 7777 88887542100 001111100 002346799999999 899998
Q ss_pred --EEecCCcEEEEecCCC-----CCccccc-eeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeee-ec
Q 009203 344 --TGGSDHAVVLWSERDA-----EDSWKPK-ALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFK-HQ 413 (540)
Q Consensus 344 --s~~~dg~i~iwd~~~~-----~~~~~~~-~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~-~~ 413 (540)
+|+.|+.|+|||+.++ +...... .....+|...|.+++|+|+ +.+|++++.||+|++||++++..... ..
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~ 190 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP 190 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence 7888999999999764 1100011 1122458999999999997 88999999999999999998865443 33
Q ss_pred cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCc--
Q 009203 414 IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPV-- 490 (540)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~-- 490 (540)
+...+.+++|+|++ .+|++|+.||.|++||++ +...............|...|.+++|++++.++++. ..||.
T Consensus 191 ~~~~v~~v~wspdg---~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 191 STVAVTSVCWSPKG---KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp GGGCEEEEEECTTS---SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CCCceeEEEEcCCC---CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 46789999999987 689999999999999998 332221111111112345589999999998887643 34433
Q ss_pred ----EEEEeccCC
Q 009203 491 ----IHLFDIRYS 499 (540)
Q Consensus 491 ----i~iwd~~~~ 499 (540)
+++|++...
T Consensus 267 ~~~~v~i~~l~~~ 279 (434)
T 2oit_A 267 TSPDVVMALLPKK 279 (434)
T ss_dssp SCCEEEEEECCCT
T ss_pred CCCceEEEEeccC
Confidence 899999863
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=6.3e-20 Score=189.94 Aligned_cols=233 Identities=7% Similarity=-0.004 Sum_probs=168.1
Q ss_pred CCCceeEEEecCCCeEEEEeecCCC-CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CC
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSG-DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DH 349 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg 349 (540)
..+|.+++|+|||+.||++ +. ||++.||++.++ ...+... ++...+..++|+| + .++++++. +.
T Consensus 21 ~~~~~~~~~~~DG~~la~~----s~~~g~~~lw~~~~g---~~~~lt~---~~~~~~~~~~~sp-d-~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVV----GFSEGSVNAYLYDGG---ETVKLNR---EPINSVLDPHYGV-G-RVILVRDVSKGAE 88 (582)
T ss_dssp HSCEEEEEEEETTTEEEEE----EEETTEEEEEEEETT---EEEECCS---SCCSEECEECTTC-S-EEEEEEECSTTSC
T ss_pred ccchheeecCCCCCeEEEE----EccCCceeEEEEcCC---CcEeeec---ccccccccccCCC-C-eEEEEeccCCCCc
Confidence 3568999999999999988 55 999999998654 3333332 2335689999999 7 67777765 45
Q ss_pred cEEEEecCC--CCCccccceeecccCCcceeEEEeccCCCE-EEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCC
Q 009203 350 AVVLWSERD--AEDSWKPKALHRNLHSSAVMGVAGMQQKQI-VLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPC 426 (540)
Q Consensus 350 ~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 426 (540)
...+|.+.. ... ...+. ....+...+|+|+|+. +++.+.++.+.+||+.+++......... .++.|+|+
T Consensus 89 ~~~l~~~~~~~~g~---~~~l~---~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spD 160 (582)
T 3o4h_A 89 QHALFKVNTSRPGE---EQRLE---AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIR 160 (582)
T ss_dssp CEEEEEEETTSTTC---CEECT---TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEE
T ss_pred ceEEEEEeccCCCc---ccccc---CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCC
Confidence 556655543 221 11111 2223446688888753 3333444455699999887654443333 77889998
Q ss_pred CCCceEEEEEcCC----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC--cEEEEeccCCC
Q 009203 427 DFNLFMVQTGTPG----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP--VIHLFDIRYSA 500 (540)
Q Consensus 427 ~~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg--~i~iwd~~~~~ 500 (540)
+ .+|++++.+ +.|++||+.+++.. .+..|...+..++|||||++|+++..++ .|++||+.+
T Consensus 161 G---~~la~~~~~~~~~~~i~~~d~~~g~~~--------~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-- 227 (582)
T 3o4h_A 161 G---DLIAGLGFFGGGRVSLFTSNLSSGGLR--------VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-- 227 (582)
T ss_dssp T---TEEEEEEEEETTEEEEEEEETTTCCCE--------EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT--
T ss_pred C---CEEEEEEEcCCCCeEEEEEcCCCCCce--------EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC--
Confidence 8 678877666 78999999877642 2345677889999999999999888888 899999987
Q ss_pred CcccccccccccceeEEE--------EcCCCCEEEEEEcCCcEEEEeC
Q 009203 501 NKPSQSIRAHQKRVFKAV--------WHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 501 ~~~~~~~~~h~~~i~~l~--------~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+... .+..|...+..++ |+|||.++++++.||.+++|++
T Consensus 228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 228 GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 4444 6667777777777 9999999999999999999985
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=2.5e-18 Score=182.87 Aligned_cols=275 Identities=11% Similarity=0.026 Sum_probs=175.8
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC---
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD--- 299 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d--- 299 (540)
.....+++|+|| +.+|+++ |++|++||+.+++....+..... ..+......++|||||++|+.+ +.+
T Consensus 16 ~~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Spdg~~l~~~----~~~~~~ 85 (740)
T 4a5s_A 16 RLKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTF---DEFGHSINDYSISPDGQFILLE----YNYVKQ 85 (740)
T ss_dssp CCCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTT---TTCCSCCCEEEECTTSSEEEEE----EEEEEC
T ss_pred cccccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhh---hhhcccccceEECCCCCEEEEE----ECCeee
Confidence 345678999996 8888886 99999999999876433321110 1111223458999999999998 443
Q ss_pred ------CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203 300 ------SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH 373 (540)
Q Consensus 300 ------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 373 (540)
+.+.+||+.++ ... .+.. +.+.+..++|+| ||+.|+.+. |+.|++||+.++.. ..+...++
T Consensus 86 ~r~~~~~~~~~~d~~~~---~~~-~l~~---~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~----~~lt~~g~ 152 (740)
T 4a5s_A 86 WRHSYTASYDIYDLNKR---QLI-TEER---IPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPS----YRITWTGK 152 (740)
T ss_dssp SSSCEEEEEEEEETTTT---EEC-CSSC---CCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCC----EECCSCCB
T ss_pred EEEccceEEEEEECCCC---cEE-Eccc---CCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCce----EEEcCCCC
Confidence 67789999986 222 2332 346799999999 999998885 68999999988763 23322233
Q ss_pred Ccc-----------------eeEEEeccCCCEEEEEeCCC------------------------------------eEEE
Q 009203 374 SSA-----------------VMGVAGMQQKQIVLSAGADK------------------------------------RIIG 400 (540)
Q Consensus 374 ~~~-----------------v~~l~~s~~~~~l~~~~~dg------------------------------------~i~i 400 (540)
... ...+.|||||+.|+.++.|. .|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 222 23589999999999875321 5888
Q ss_pred EECCC---C---Ceeeeec------cCccEEEEeecCCCCCceEEEEE----cCCCeEEEEECCCCc----ceeeeeccc
Q 009203 401 FDAGV---G---RADFKHQ------IESKCMSVLPNPCDFNLFMVQTG----TPGRQLRLYDIRLRQ----TEIHAFGWK 460 (540)
Q Consensus 401 wd~~~---~---~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~----~~dg~v~i~d~~~~~----~~~~~~~~~ 460 (540)
||+.+ + +...... ....+..+.|+|++ .+++.. ..+..|.+||+.+++ +.... .
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg---~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~---~ 306 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE---RISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR---Q 306 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT---EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG---C
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC---eEEEEEeCCCCCEEEEEEEECCCCccccceeEEE---E
Confidence 99988 7 3322221 44567789999988 444443 223479999998876 21100 0
Q ss_pred cccCccccCeE-----EEEEcCCCCEEE-EEe-CCC--cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 461 QESSESQSALI-----NQSWSPDGLYIT-SGS-ADP--VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 461 ~~~~~~~~~v~-----~~~~sp~g~~l~-sg~-~dg--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
....+|...|. .++|+|||+.|+ ..+ .+| .|++||+.. +. ...+......|..+.+ +|++.|+..+
T Consensus 307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~--~~-~~~lT~g~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK--KD-CTFITKGTWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC--SS-CEESCCSSSCEEEEEE-ECSSEEEEEE
T ss_pred eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC--Cc-eEecccCCEEEEEEEE-EeCCEEEEEE
Confidence 00023444443 688999999877 555 344 577788775 23 3334333445555442 3465544443
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=1e-17 Score=176.25 Aligned_cols=293 Identities=11% Similarity=-0.029 Sum_probs=191.8
Q ss_pred hcccccCceEEEEEecCCCcEEEEE--eCCceEEEEEcCCCCCcceeecccccCCCCCCCCce---------eEEEe--c
Q 009203 218 VSSLHKRKLRSLSLNPVNEQLFVTS--ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE---------DIAWH--P 284 (540)
Q Consensus 218 ~~~~h~~~V~~l~~spd~~~~l~tg--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~~~~~--~ 284 (540)
.+.+|...|..++|+++ +.++++. +.++...||....+.....+ ..|...+. ...|+ |
T Consensus 18 ~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~~~SP 88 (662)
T 3azo_A 18 LVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEESA--------LPAPWNVRNRVFEYSGFPWAGVPRP 88 (662)
T ss_dssp HHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSCEEES--------SCTTCCBCCCGGGTCCCCEEEECCS
T ss_pred HHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCCccee--------CCCCccccccccccCCccceeeeec
Confidence 46789999999999985 6666766 56889999997544433333 23334444 56676 9
Q ss_pred CCCe-EEEEeecCCCCCeEEEEecC--C-CCCceeEEeecCCC--CcccceeEEEEeCCCCCEEEEEecC----------
Q 009203 285 QGNS-LFSAHTADSGDSQISVLNLN--K-TKGRACVTFLDDKP--HVKGIINSIIFLPWENPCFATGGSD---------- 348 (540)
Q Consensus 285 ~~~~-l~s~~~~~~~d~~i~vwd~~--~-~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~~d---------- 348 (540)
||+. |+.+. ..+..|.+|++. . +. ...+...+ .+...+.+++|+| +++.|++++.+
T Consensus 89 Dg~~~la~~~---~~~~~l~~~~~~~~g~~~----~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 89 AGGPLLVFTH---FGDQRLYAFEPDAPGGAV----PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp SSSCEEEEEB---TTTCCEEEECTTSTTCCC----CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEE
T ss_pred CCCeEEEEEE---CCCCeEEEEcCCCCCCCC----CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCce
Confidence 9998 77651 336677777776 2 32 22222211 0345688999999 99999988876
Q ss_pred CcEEEEecCC------CCCccccceeecccCCcceeEEEeccCCCEEEEEeCC--------CeEEEEECC-CC---Ceee
Q 009203 349 HAVVLWSERD------AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD--------KRIIGFDAG-VG---RADF 410 (540)
Q Consensus 349 g~i~iwd~~~------~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~ 410 (540)
..|++||+.+ +.. ..+. ..+...+..++|+|||++|+.++.+ ..|++||+. ++ ....
T Consensus 161 ~~i~~~~~~~~~~~~~~~~----~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV----RELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS----EESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCccccCCce----eEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 5899999988 542 3332 0345678899999999999988755 379999998 56 3333
Q ss_pred eec-cCccEEEEeecCCCCCceEEEEEcCCC--eEEEEECCCCcceeeeeccccccCc--cccCeEEEEEcCCCCEEEEE
Q 009203 411 KHQ-IESKCMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRLRQTEIHAFGWKQESSE--SQSALINQSWSPDGLYITSG 485 (540)
Q Consensus 411 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~sg 485 (540)
... ....+..+.|+|++ .+++++..++ .|.+||+.+++... .......... -.-.+..++|+|++.+++++
T Consensus 236 l~~~~~~~~~~~~~spdg---~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 236 LLGGPEEAIAQAEWAPDG---SLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp EEEETTBCEEEEEECTTS---CEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred eCCCCCceEcceEECCCC---eEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEE
Confidence 332 24677889999988 5677777788 66667765554221 1100000000 00015678999999999999
Q ss_pred eCCCcEEEEeccCCCCcccccccccccceeEE-EEcCCCCEEEEEEcCCcEEEE
Q 009203 486 SADPVIHLFDIRYSANKPSQSIRAHQKRVFKA-VWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 486 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l-~~s~~~~~l~s~~~dg~v~iw 538 (540)
+. +.++||.++.. ...+..+..|...+..+ +++.+.-++++++.+....||
T Consensus 312 ~~-~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 312 GK-GAAVLGILDPE-SGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp BS-SSCEEEEEETT-TTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred Ec-CccEEEEEECC-CCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 98 99999955532 23356677777777777 554433345555666555555
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=5.8e-18 Score=163.07 Aligned_cols=277 Identities=11% Similarity=0.084 Sum_probs=170.5
Q ss_pred eEEecCCCCeEEEeccc-----hhccccc-CceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203 200 LVRTSASPATIHCHTSN-----HVSSLHK-RKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK 272 (540)
Q Consensus 200 ~~~~~~~d~~i~~~~~~-----~~~~~h~-~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 272 (540)
.++++..+++|.+|+.. ..+..+. ..+..++|+|| ++ +++++..++.|.+||+.+++....+...... ..
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~--~~ 89 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP--GE 89 (349)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEESCCST--TE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc--cc
Confidence 35566678899999764 1233232 26889999997 65 5566667899999999887655444211000 00
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCC------------CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGD------------SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP 340 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 340 (540)
+...+.+++|+|+|++|+++ +.+ +.|.+||+.++.....+..+.. ...+.+++|+| +++
T Consensus 90 ~~~~~~~~~~spdg~~l~~~----~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~-dg~ 160 (349)
T 1jmx_B 90 VGRSMYSFAISPDGKEVYAT----VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM----PRQVYLMRAAD-DGS 160 (349)
T ss_dssp EEECSSCEEECTTSSEEEEE----EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----CSSCCCEEECT-TSC
T ss_pred ccccccceEECCCCCEEEEE----cccccccccccccCCCeEEEEECCCccccceeeeccC----CCcccceeECC-CCc
Confidence 02347889999999999998 543 8999999987533233333332 23588999999 888
Q ss_pred EEEEEecCCcEEEEecCCCCCccccceeeccc--C----------------C----cceeEEEeccCCCEEEEEeC-CCe
Q 009203 341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNL--H----------------S----SAVMGVAGMQQKQIVLSAGA-DKR 397 (540)
Q Consensus 341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~----------------~----~~v~~l~~s~~~~~l~~~~~-dg~ 397 (540)
+++++ +.|.+||+.+++... .+.... . . ....++++++++........ ...
T Consensus 161 -l~~~~--~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 161 -LYVAG--PDIYKMDVKTGKYTV---ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp -EEEES--SSEEEECTTTCCEEE---EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred -EEEcc--CcEEEEeCCCCceec---cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 55554 349999998876422 111100 0 0 02344666654421100000 011
Q ss_pred EEEEECCCCCeeee--eccCccEEEEeecC-CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEE
Q 009203 398 IIGFDAGVGRADFK--HQIESKCMSVLPNP-CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS 474 (540)
Q Consensus 398 i~iwd~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 474 (540)
+..+|..+++.... .........+.++| ++ .+++++ ++.|.+||+.+++...... ....+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg---~~l~~~--~~~v~~~d~~~~~~~~~~~--------~~~~~~~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP---NQIYGV--LNRLAKYDLKQRKLIKAAN--------LDHTYYCVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCT---TEEEEE--ESEEEEEETTTTEEEEEEE--------CSSCCCEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCC---CEEEEE--cCeEEEEECccCeEEEEEc--------CCCCccceE
Confidence 22244444433111 12345677888999 77 466666 8899999999876433211 123467899
Q ss_pred EcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203 475 WSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 475 ~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
|+|+|++|++++.++.|.+||+.+ ++.+..+..
T Consensus 302 ~s~dg~~l~~~~~~~~v~v~d~~~--~~~~~~~~~ 334 (349)
T 1jmx_B 302 FDKKGDKLYLGGTFNDLAVFNPDT--LEKVKNIKL 334 (349)
T ss_dssp ECSSSSCEEEESBSSEEEEEETTT--TEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEeccc--cceeeeeec
Confidence 999999999888899999999987 565555543
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=8.6e-17 Score=150.37 Aligned_cols=243 Identities=11% Similarity=0.136 Sum_probs=173.6
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC---CCcccceeEEEEeCCCCCEEEEEec
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK---PHVKGIINSIIFLPWENPCFATGGS 347 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~~~ 347 (540)
.++...+.+++++++|.++++. ..++.|.+||.. + ..+..+... ..+...+.++++.+.++.++++...
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~----~~~~~i~~~d~~-g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~ 97 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVAD----TNNHRIQIFDKE-G---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 97 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEE----GGGTEEEEECTT-S---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred CCccCCCceEEECCCCCEEEEE----CCCCEEEEECCC-C---cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC
Confidence 3556678899999999988887 789999999987 3 223333221 1233468899995327776666643
Q ss_pred -CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---cCccEEEEee
Q 009203 348 -DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLP 423 (540)
Q Consensus 348 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~ 423 (540)
++.|.+||. +++. ...+ ...+...+.+++++++|+++++...++.|.+||.. ++.+.... .......+++
T Consensus 98 ~~~~i~~~d~-~g~~---~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 98 PTHQIQIYNQ-YGQF---VRKF-GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp GGCEEEEECT-TSCE---EEEE-CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEE
T ss_pred CCCEEEEECC-CCcE---EEEe-cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEE
Confidence 789999994 4442 1222 12244578999999999988888888999999975 55444432 2345788999
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEeccCCCCc
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-VIHLFDIRYSANK 502 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-~i~iwd~~~~~~~ 502 (540)
++++ .++++...++.|++||.... ....+. ..++...+.+++++++|+++++...++ .|.+||.. +.
T Consensus 172 ~~~g---~l~v~~~~~~~i~~~~~~g~--~~~~~~----~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~---g~ 239 (286)
T 1q7f_A 172 NDKQ---EIFISDNRAHCVKVFNYEGQ--YLRQIG----GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD---GQ 239 (286)
T ss_dssp CSSS---EEEEEEGGGTEEEEEETTCC--EEEEES----CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT---SC
T ss_pred CCCC---CEEEEECCCCEEEEEcCCCC--EEEEEc----cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC---CC
Confidence 9977 67777788999999998533 222221 122335789999999999888888776 99999965 55
Q ss_pred cccccccccc--ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 503 PSQSIRAHQK--RVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 503 ~~~~~~~h~~--~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+..+..+.. .+.+++++|+|+++++ +.|++|++|++
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 5666654432 4789999999987777 67999999985
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=3e-17 Score=158.50 Aligned_cols=289 Identities=10% Similarity=0.058 Sum_probs=190.2
Q ss_pred CCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCC
Q 009203 206 SPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLS 270 (540)
Q Consensus 206 ~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~ 270 (540)
.|+.|.+||.. ..+..+..+ .++|+|| +++|+++. .++.|.+||..+.+...++......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-- 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-- 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB--
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc--
Confidence 36677777643 223444455 8999996 88777775 3678999999887766665432110
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEe-ecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTF-LDDKPHVKGIINSIIFLPWENPCFATGGSDH 349 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 349 (540)
..+......++|+|||++|+++.. +.++.|.+||+.++ +.+.. +.. .....+.+.|.....+++.+.||
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~--~~~~~v~v~d~~~~---~~~~~~i~~-----~~~~~v~~~p~~~~~~~~~~~dg 173 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNA--SPATSIGIVDVAKG---DYVEDVTAA-----AGCWSVIPQPNRPRSFMTICGDG 173 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEE--SSSEEEEEEETTTT---EEEEEEGGG-----TTEEEEEECTTSSSEEEEEETTS
T ss_pred cccCCCcceEEECCCCCEEEEECC--CCCCeEEEEECCCC---cEEEEEecC-----CCcceeEEcCCCCeeEEEECCCC
Confidence 112345788999999999998711 13689999999986 44554 432 12344667784457888889999
Q ss_pred cEEEEecCC-CCCccccce-eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--ecc-----------
Q 009203 350 AVVLWSERD-AEDSWKPKA-LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQI----------- 414 (540)
Q Consensus 350 ~i~iwd~~~-~~~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~----------- 414 (540)
.+.+|++.. ++....... ........+ ..+.+++++..++..+.++.|.++|+..+..... ...
T Consensus 174 ~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (361)
T 2oiz_A 174 GLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV 252 (361)
T ss_dssp SEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE
T ss_pred cEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc
Confidence 999999875 332100000 000111222 2344567888888888899999999976543211 110
Q ss_pred CccEEEEeecCCCCCceEEEEEc----------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203 415 ESKCMSVLPNPCDFNLFMVQTGT----------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS 484 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~----------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 484 (540)
......+.++|++. .++++.. ..+.|.+||+.+.+.... +..+. +.+++|+|||++|++
T Consensus 253 p~g~~~~a~~~dg~--~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-------i~~~~--p~~ia~spdg~~l~v 321 (361)
T 2oiz_A 253 PGGYNLVGLHRASG--RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-------IPGRD--ALSMTIDQQRNLMLT 321 (361)
T ss_dssp ECCSSCEEEETTTT--EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-------EECTT--CCEEEEETTTTEEEE
T ss_pred cCCeeEEEEecCCC--eEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-------EecCC--eeEEEECCCCCEEEE
Confidence 01111256777753 2333332 135899999998875432 22333 899999999999998
Q ss_pred EeCCCcEEEEeccCCCC--cccccccccccceeEEEEcCCCC
Q 009203 485 GSADPVIHLFDIRYSAN--KPSQSIRAHQKRVFKAVWHYSHP 524 (540)
Q Consensus 485 g~~dg~i~iwd~~~~~~--~~~~~~~~h~~~i~~l~~s~~~~ 524 (540)
++. +.|.+||..+ + +.+..+..+......++++|+|.
T Consensus 322 ~n~-~~v~v~D~~t--~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 322 LDG-GNVNVYDISQ--PEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECS-SCEEEEECSS--SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eCC-CeEEEEECCC--CcceeeEEeccCCCCcEEEEecCCCC
Confidence 887 9999999998 6 78888766777789999999985
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=7.5e-17 Score=153.97 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=177.7
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCC------------------------CeEEEEecCCCCCceeEEeecCCCCcccce
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGD------------------------SQISVLNLNKTKGRACVTFLDDKPHVKGII 329 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 329 (540)
...+.+++++++|+++++. ..+ +.|.+||..++ ..+..+.. .+-..+
T Consensus 23 l~~v~~va~d~~G~l~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~--~~~~~p 93 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFH----RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGK--NLFYLP 93 (329)
T ss_dssp CSCEEEEEECTTCCEEEEE----CTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECT--TTCSSE
T ss_pred cCCceEEEECCCCCEEEEe----CCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCC--CccCCc
Confidence 3568999999999998887 555 47999999876 33444332 223468
Q ss_pred eEEEEeCCCCCEEEEEecCCcEEEEecCCCC-Cccccceeec-------ccCCcceeEEEecc-CCCEEEEEe-CCCeEE
Q 009203 330 NSIIFLPWENPCFATGGSDHAVVLWSERDAE-DSWKPKALHR-------NLHSSAVMGVAGMQ-QKQIVLSAG-ADKRII 399 (540)
Q Consensus 330 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~-------~~~~~~v~~l~~s~-~~~~l~~~~-~dg~i~ 399 (540)
.+++++| +++++++...++.|++||..... . ...+.. ..+.....+++++| +|.++++.+ .++.|+
T Consensus 94 ~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~---~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 94 HGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGP---LLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp EEEEECT-TSCEEEEETTTTEEEEECTTCSSCC---SEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred eEEEECC-CCCEEEEECCCCEEEEEeCCCCeEE---EEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 8999999 99988988889999999987652 1 122211 23445789999999 788888886 689999
Q ss_pred EEECCCCCeeeeeccC-----------ccEEEEeecCC-CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203 400 GFDAGVGRADFKHQIE-----------SKCMSVLPNPC-DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ 467 (540)
Q Consensus 400 iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 467 (540)
+||. ++..+...... .....++++|+ + .++++...++.|++||..+++.... + ....+.
T Consensus 170 ~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g---~l~v~d~~~~~I~~~~~~~G~~~~~-~----~~~~~~ 240 (329)
T 3fvz_A 170 QFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD---QLCVADRENGRIQCFKTDTKEFVRE-I----KHASFG 240 (329)
T ss_dssp EECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT---EEEEEETTTTEEEEEETTTCCEEEE-E----CCTTTT
T ss_pred EEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC---EEEEEECCCCEEEEEECCCCcEEEE-E----eccccC
Confidence 9994 46665543211 23678899987 5 6888888899999999986654332 2 123455
Q ss_pred cCeEEEEEcC------CCCEEEEEeCCCcEEEEeccCCCCcccccc---cccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 468 SALINQSWSP------DGLYITSGSADPVIHLFDIRYSANKPSQSI---RAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 468 ~~v~~~~~sp------~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
..+.+++|+| +|+.+++...+..|++|++.+ ++.+..+ ..+...+.+|+++|+|.++++...++.|++|
T Consensus 241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS--GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT--CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC--CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 6788999999 333333334456899999987 6666666 3566779999999999888999999999999
Q ss_pred eC
Q 009203 539 KI 540 (540)
Q Consensus 539 ~l 540 (540)
++
T Consensus 319 ~~ 320 (329)
T 3fvz_A 319 TL 320 (329)
T ss_dssp EE
T ss_pred eC
Confidence 74
No 168
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=3.5e-17 Score=156.67 Aligned_cols=277 Identities=12% Similarity=0.012 Sum_probs=187.2
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
..|.+++|+|+ +..++..+.++.++.|. ++....+ ..+...+.+++|+++|++++++ ..++.|.
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~g~l~~~~----~~~~~i~ 69 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTIT---AEPWLEI--------SKKGLQLEGLNFDRQGQLFLLD----VFEGNIF 69 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEEE---CEEEEEE--------ESSCCCEEEEEECTTSCEEEEE----TTTCEEE
T ss_pred cccceeeecCC-ccceeEEeecccCcccc---cceeEEE--------eccCccccCcEECCCCCEEEEE----CCCCEEE
Confidence 45788899995 67677777888999992 2222222 2344567899999999988887 8899999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC----CcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD----HAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
+||..++. ....... +...+.+++|+| ++.++++...+ +.|.+||..++... ..+....+...+.+
T Consensus 70 ~~d~~~~~---~~~~~~~---~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 70 KINPETKE---IKRPFVS---HKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQ---DIIEDLSTAYCIDD 139 (333)
T ss_dssp EECTTTCC---EEEEEEC---SSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCE---EEECSSSSCCCEEE
T ss_pred EEeCCCCc---EEEEeeC---CCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEE---EEEccCccCCcccc
Confidence 99998762 2222211 235699999999 88888877666 68999999887631 11211224467899
Q ss_pred EEeccCCCEEEEEeC------CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 380 VAGMQQKQIVLSAGA------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 380 l~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
++++|+|+++++... .+.|..||..+++.............+.++|++. .++++.+.++.|.+||+.+....
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~--~l~v~~~~~~~i~~~d~~~~g~~ 217 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK--VLWVTETTANRLHRIALEDDGVT 217 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS--EEEEEEGGGTEEEEEEECTTSSS
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC--EEEEEeCCCCeEEEEEecCCCcC
Confidence 999999988776654 3567777776655433322234567888999862 24455667889999999642211
Q ss_pred eeeec--cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc------ceeEEEEcCCCCE
Q 009203 454 IHAFG--WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK------RVFKAVWHYSHPL 525 (540)
Q Consensus 454 ~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~------~i~~l~~s~~~~~ 525 (540)
...+. ....+.++ ..+..++++++|+++++...++.|.+||.. +..+..+..+.. .+.+++|+||+..
T Consensus 218 ~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~---g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 218 IQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR---GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp EEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT---SCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred cccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC---CCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence 11110 00011222 467889999999988888788999999985 445555543332 6899999999877
Q ss_pred EEEEEcC
Q 009203 526 LISISSD 532 (540)
Q Consensus 526 l~s~~~d 532 (540)
|+.++.+
T Consensus 294 L~v~~~~ 300 (333)
T 2dg1_A 294 LIICSND 300 (333)
T ss_dssp EEEEEEC
T ss_pred EEEEeCc
Confidence 7655555
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1.2e-17 Score=162.08 Aligned_cols=253 Identities=9% Similarity=0.027 Sum_probs=165.5
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcC-CCCCcceeecccccCCCCCCCCceeEEEecCCCe--EEEEeecCC-
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ-SRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNS--LFSAHTADS- 297 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~--l~s~~~~~~- 297 (540)
+...+..++|+|| +++|++++.+ .|.+|++. +++....... ..+ +.+.+++|+|+|++ ++++ .
T Consensus 38 ~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------~~~-g~~~~~~~spdg~~l~~~~~----~~ 104 (365)
T 1jof_A 38 QDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASH------PIG-GHPRANDADTNTRAIFLLAA----KQ 104 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEE------ECC-SSGGGGCTTSCCEEEEEEEC----SS
T ss_pred CCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEe------ecC-CCCccEEECCCCCEEEEEEe----cC
Confidence 3356889999996 8888888887 99999997 5543221111 011 12667999999995 4444 3
Q ss_pred ------------CCCeEEEEecCC-CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecC-CCCCc
Q 009203 298 ------------GDSQISVLNLNK-TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSER-DAEDS 362 (540)
Q Consensus 298 ------------~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~-~~~~~ 362 (540)
.++.+.+|++.. +.....+..+.. .+...+.+++|+| ++++|+++.. ++.|++||+. +++..
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~ 181 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY--QENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC--CTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CcceeccceeecCCceEEEEccCCCCcCcceEeeEEe--CCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence 689999999974 321112222211 1235689999999 9988877654 6799999998 66531
Q ss_pred cccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECC--CCCeee------eeccC----c-------cEEEEe
Q 009203 363 WKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAG--VGRADF------KHQIE----S-------KCMSVL 422 (540)
Q Consensus 363 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~--~~~~~~------~~~~~----~-------~~~~~~ 422 (540)
. ...+....|...+..++|+|+|+++++++. ++.|.+|++. +++... ..... . ....+.
T Consensus 182 ~-~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 182 L-VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp E-EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred E-eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence 0 111111124567899999999999888775 6899999765 455421 11111 1 477899
Q ss_pred -ecCCCCCceEEEEEcC-CC-----eEEEEECC-CCcceeeeeccccccCccccCeEEEEEcC---CCCEEEEEeCC-Cc
Q 009203 423 -PNPCDFNLFMVQTGTP-GR-----QLRLYDIR-LRQTEIHAFGWKQESSESQSALINQSWSP---DGLYITSGSAD-PV 490 (540)
Q Consensus 423 -~~~~~~~~~~l~~~~~-dg-----~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~sg~~d-g~ 490 (540)
++|++ ++|+++.. ++ .|.+|++. ++.. ..... ....+...+..++|+| ||++|++++.+ +.
T Consensus 261 ~~spdG---~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-~~~~~---~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~ 333 (365)
T 1jof_A 261 ALTFSG---KYMFASSRANKFELQGYIAGFKLRDCGSI-EKQLF---LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW 333 (365)
T ss_dssp EECTTS---SEEEEEEEESSTTSCCEEEEEEECTTSCE-EEEEE---EEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred EECCCC---CEEEEECCCCCCCCCCeEEEEEECCCCCE-EEeee---eeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence 99988 45555443 22 89999996 3332 21100 0112333466789999 89999998764 89
Q ss_pred EEEEeccC
Q 009203 491 IHLFDIRY 498 (540)
Q Consensus 491 i~iwd~~~ 498 (540)
|.+|+++.
T Consensus 334 v~v~~~~~ 341 (365)
T 1jof_A 334 LEIYRWKD 341 (365)
T ss_dssp EEEEEEET
T ss_pred EEEEEEch
Confidence 99999985
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=3.7e-18 Score=167.59 Aligned_cols=275 Identities=8% Similarity=-0.020 Sum_probs=176.2
Q ss_pred cCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
...+.+++|+|| |++|+..... ..|.+||+.+++.. .+. .++......+.|+|||+.|+.+ +.+
T Consensus 35 ~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~-------~~~~~~~~~~~~spdg~~l~~~----~~~ 101 (396)
T 3c5m_A 35 RNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNLETQQAV-QLT-------EGKGDNTFGGFISTDERAFFYV----KNE 101 (396)
T ss_dssp CCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTTEEE-ECC-------CSSCBCTTTCEECTTSSEEEEE----ETT
T ss_pred ceeeecCcCCCC-CCEEEEEEecCCCceEEEEECCCCcEE-Eee-------cCCCCccccceECCCCCEEEEE----EcC
Confidence 344778899997 7777666433 36888888776532 111 1222233448899999999888 778
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeE-------------------EEEeCCCCCEEEEE-----ecCCcEEEEe
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINS-------------------IIFLPWENPCFATG-----GSDHAVVLWS 355 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~p~~~~~l~s~-----~~dg~i~iwd 355 (540)
+.|++||+.++.. ....... .+.... +.|+| +++.++.+ ..+..|++||
T Consensus 102 ~~l~~~d~~~~~~---~~~~~~~---~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 102 LNLMKVDLETLEE---QVIYTVD---EEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp TEEEEEETTTCCE---EEEEECC---TTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEE
T ss_pred CcEEEEECCCCCc---EEEEecc---cccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEE
Confidence 8999999987632 2222211 111111 34577 66666544 3566899999
Q ss_pred cCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCC------CeEEEEECCCCCeeeeecc--CccEEEEeecCC
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGAD------KRIIGFDAGVGRADFKHQI--ESKCMSVLPNPC 426 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~ 426 (540)
+.+++. ..+. .+...+..+.|+| ++..|+..+.+ ..|.+||+..+........ ...+..+.|+|+
T Consensus 175 ~~~g~~----~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 175 IETGEL----EVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp TTTCCE----EEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT
T ss_pred CCCCcE----Eeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC
Confidence 988763 3332 2566789999999 78877776553 3689999876654333222 235667899998
Q ss_pred CCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CCCEEEEEe--------------
Q 009203 427 DFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DGLYITSGS-------------- 486 (540)
Q Consensus 427 ~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~-------------- 486 (540)
+ .+|+..+.+ +.|++||+.++...... ...+ .. +.|+| ||++|++++
T Consensus 249 g---~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-----~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 249 G---SAMAYVSYFKGQTDRVIYKANPETLENEEVM-----VMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp S---SCEEEEEEETTTCCEEEEEECTTTCCEEEEE-----ECCS----EE-EEEECSSSSEEEEEECCC----------C
T ss_pred C---CEEEEEecCCCCccceEEEEECCCCCeEEee-----eCCC----CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 8 344444322 45999999877642211 1111 22 89999 999888754
Q ss_pred --CCCcEEEEeccCCCCccccccccccc-----------ceeEEEEcCCCCEEEEEEc-CCcEEEEe
Q 009203 487 --ADPVIHLFDIRYSANKPSQSIRAHQK-----------RVFKAVWHYSHPLLISISS-DLNIGLHK 539 (540)
Q Consensus 487 --~dg~i~iwd~~~~~~~~~~~~~~h~~-----------~i~~l~~s~~~~~l~s~~~-dg~v~iw~ 539 (540)
.++.|++||+.++ . ...+..+.. .+..++|+|||+.|+.++. ++...||.
T Consensus 316 ~~~~~~i~~~d~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 316 IENDPFLYVLNTKAK--S-AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp CCCCCEEEEEETTTT--B-CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCCCCcEEEEecccC--c-eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 3478999999863 3 234444443 2567899999998877764 56666664
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=5e-16 Score=145.18 Aligned_cols=249 Identities=12% Similarity=0.099 Sum_probs=174.1
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe-cCCCeEEEEeecCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH-PQGNSLFSAHTADSG 298 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~s~~~~~~~ 298 (540)
.+|-..+.+++++|+ +.++++...++.|.+||.. ++....+... ....+|...+.++++. +++.++++. ..
T Consensus 26 ~g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~--~~~~~~~~~p~~i~~~~~~g~l~v~~----~~ 97 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGEC--GKRDSQLLYPNRVAVVRNSGDIIVTE----RS 97 (286)
T ss_dssp TTCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCB--SSSTTCBSSEEEEEEETTTTEEEEEE----CG
T ss_pred CCccCCCceEEECCC-CCEEEEECCCCEEEEECCC-CcEEEEeccc--CCCcccccCceEEEEEcCCCeEEEEc----CC
Confidence 467788999999996 8888888889999999987 4433333211 1112455678899995 677666665 43
Q ss_pred -CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 299 -DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 299 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
++.|.+||.. + ..+..+.. .+...+.+++++| +++++++...++.|.+||..... ...+....+...+
T Consensus 98 ~~~~i~~~d~~-g---~~~~~~~~--~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~----~~~~~~~~~~~~p 166 (286)
T 1q7f_A 98 PTHQIQIYNQY-G---QFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNV----LHKFGCSKHLEFP 166 (286)
T ss_dssp GGCEEEEECTT-S---CEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE----EEEEECTTTCSSE
T ss_pred CCCEEEEECCC-C---cEEEEecC--ccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCE----EEEeCCCCccCCc
Confidence 8899999944 3 33444432 1234689999999 88888888888999999975432 2222222345678
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCCC-eEEEEECCCCcce
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIRLRQTE 453 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~ 453 (540)
.+++++++|+++++...++.|++||.. +..+...... .....+++++++ .++++...++ .|.+||... +.
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G---~l~v~~~~~~~~i~~~~~~g-~~- 240 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG---EILIADNHNNFNLTIFTQDG-QL- 240 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC---CEEEEECSSSCEEEEECTTS-CE-
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCC---CEEEEeCCCCEEEEEECCCC-CE-
Confidence 999999999988888889999999985 4544443322 467889999877 5777777775 999999653 22
Q ss_pred eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
...+. .......+.+++++|+|+++++ +.|+.|++|++..
T Consensus 241 ~~~~~----~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 241 ISALE----SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEE----ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEEc----ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 22221 1112235789999999987777 5799999999875
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=1.3e-17 Score=177.25 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=163.2
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC--cccceeEEEEeCCCCCEEEEEecC-----
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH--VKGIINSIIFLPWENPCFATGGSD----- 348 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~~~d----- 348 (540)
...+++|+|||.+|++ + |+.|++||+.+++ +...+..+.. .......++|+| |+++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~-----~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYK-----Q-ENNILVFNAEYGN---SSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCEEECSSSEEEEE-----E-TTEEEEEETTTCC---EEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSS
T ss_pred cccccEECCCCcEEEE-----c-CCcEEEEECCCCc---eEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEE
Confidence 3568999999987777 3 8999999999873 3455554321 111234589999 99999998876
Q ss_pred ----CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccE----
Q 009203 349 ----HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKC---- 418 (540)
Q Consensus 349 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~---- 418 (540)
+.+.+||+.+++. ..+ ..+...+...+|||||+.|+.+. ++.|++||+.++........+ ..+
T Consensus 88 ~~~~~~~~~~d~~~~~~----~~l--~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQL----ITE--ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (740)
T ss_dssp SCEEEEEEEEETTTTEE----CCS--SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred EccceEEEEEECCCCcE----EEc--ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCc
Confidence 5677999999874 223 33667899999999999999885 679999999887754322111 111
Q ss_pred -------------EEEeecCCCCCceEEEEEcCC------------------------------------CeEEEEECCC
Q 009203 419 -------------MSVLPNPCDFNLFMVQTGTPG------------------------------------RQLRLYDIRL 449 (540)
Q Consensus 419 -------------~~~~~~~~~~~~~~l~~~~~d------------------------------------g~v~i~d~~~ 449 (540)
.++.|+|++ ..|+.++.| ..|++||+.+
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg---~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNG---TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTS---SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred ccccccchhcCCCcceEECCCC---CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 247899998 566665322 1578888887
Q ss_pred ---Ccc-eeeeeccccccCccccCeEEEEEcCCCCEEEEEeC----CCcEEEEeccCCC----Ccccccc--ccccccee
Q 009203 450 ---RQT-EIHAFGWKQESSESQSALINQSWSPDGLYITSGSA----DPVIHLFDIRYSA----NKPSQSI--RAHQKRVF 515 (540)
Q Consensus 450 ---~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~----dg~i~iwd~~~~~----~~~~~~~--~~h~~~i~ 515 (540)
+.. ....+.....+.+|...+..++|+|||+.++.... +..|++||+.++. ...+..+ ..|...|.
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~ 317 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG 317 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence 531 11111111111247778999999999997665532 3479999999732 0122223 44665554
Q ss_pred -----EEEEcCCCCEEE-EEE-cCC--cEEEEe
Q 009203 516 -----KAVWHYSHPLLI-SIS-SDL--NIGLHK 539 (540)
Q Consensus 516 -----~l~~s~~~~~l~-s~~-~dg--~v~iw~ 539 (540)
.++|+|||+.|+ ..+ .+| .|++|+
T Consensus 318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 789999999776 665 444 466665
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=6.5e-17 Score=156.20 Aligned_cols=271 Identities=6% Similarity=0.040 Sum_probs=172.2
Q ss_pred CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee------cCCCCCeEEEEecCCCCCceeEE
Q 009203 244 LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT------ADSGDSQISVLNLNKTKGRACVT 317 (540)
Q Consensus 244 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~------~~~~d~~i~vwd~~~~~~~~~~~ 317 (540)
.|+.|.+||..+++...++. .+..+ .++|+|||++|+++.. .|..++.|.+||..+.+....+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~--------~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~ 98 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVP--------TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS 98 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEE--------CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred ccCeEEEEECCCCeEEEEec--------CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence 36799999998887655442 22233 7999999999998721 01136789999998763322222
Q ss_pred eecCCCCcccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccce-eecccCCcceeEEEeccCC-CEEEEEe
Q 009203 318 FLDDKPHVKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKA-LHRNLHSSAVMGVAGMQQK-QIVLSAG 393 (540)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~-~~l~~~~ 393 (540)
.......+......++|+| ++++|+++.. +++|.+||+.+++.+ .. +. . .....+.+.|++ ..+++.+
T Consensus 99 ~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~---~~~i~---~-~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 99 LPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYV---EDVTA---A-AGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp ECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEE---EEEGG---G-TTEEEEEECTTSSSEEEEEE
T ss_pred cCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEE---EEEec---C-CCcceeEEcCCCCeeEEEEC
Confidence 2211111123477899999 9999988764 578999999987642 21 11 1 122335566765 6778888
Q ss_pred CCCeEEEEECCC-CCeeee------eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee-eeecccc----
Q 009203 394 ADKRIIGFDAGV-GRADFK------HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI-HAFGWKQ---- 461 (540)
Q Consensus 394 ~dg~i~iwd~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~---- 461 (540)
.||.+.+|++.. ++.... +........+.+.+++ ..++..+.++.|.++|+....... ..+....
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK---DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS---SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC---CEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 999999999865 444311 1111111112223333 244455678899999997554221 1110000
Q ss_pred ccCccccCeEEEEEcCCCCEEEEEeC-----------CCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 462 ESSESQSALINQSWSPDGLYITSGSA-----------DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 462 ~~~~~~~~v~~~~~sp~g~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
...-.......++|+|+++.++++.. .+.|.+||+.+ .+.+.++..+. +.+++|+|||++|++++
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--~~~v~~i~~~~--p~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--KQRVARIPGRD--ALSMTIDQQRNLMLTLD 323 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT--TEEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC--CcEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence 00000111223789999888776543 34799999998 78888888776 99999999999999888
Q ss_pred cCCcEEEEeC
Q 009203 531 SDLNIGLHKI 540 (540)
Q Consensus 531 ~dg~v~iw~l 540 (540)
. +.|.+||.
T Consensus 324 ~-~~v~v~D~ 332 (361)
T 2oiz_A 324 G-GNVNVYDI 332 (361)
T ss_dssp S-SCEEEEEC
T ss_pred C-CeEEEEEC
Confidence 6 99999984
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=1.9e-15 Score=144.19 Aligned_cols=250 Identities=12% Similarity=0.084 Sum_probs=178.9
Q ss_pred cCceEEEEEecCCCcEEEEEeCC------------------------ceEEEEEcCCCCCcceeecccccCCCCCCCCce
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALD------------------------GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE 278 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~ 278 (540)
-+.|.+|+++|+ |+++++...+ ++|.+||..+++....+. .++...+.
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-------KNLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-------TTTCSSEE
T ss_pred cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-------CCccCCce
Confidence 367999999996 8888888877 479999998877543331 24456688
Q ss_pred eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC------CCcccceeEEEEeCCCCCEEEEEe-cCCcE
Q 009203 279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK------PHVKGIINSIIFLPWENPCFATGG-SDHAV 351 (540)
Q Consensus 279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i 351 (540)
.++++++|+++++. ..++.|++||..... ..+..+... ..+-..+.+++++|.++.++++.+ .++.|
T Consensus 95 gia~d~~g~l~v~d----~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 95 GLSIDTDGNYWVTD----VALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp EEEECTTSCEEEEE----TTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred EEEECCCCCEEEEE----CCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 99999999988887 889999999986431 123333210 112345889999985677778776 68999
Q ss_pred EEEecCCCCCccccceeecc--------cCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeec---cCccEE
Q 009203 352 VLWSERDAEDSWKPKALHRN--------LHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQ---IESKCM 419 (540)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~~--------~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~ 419 (540)
++||.. +.. ...+... ++.....+++++|+ +.++++...++.|++||..+++.+.... ......
T Consensus 169 ~~~~~~-g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~ 244 (329)
T 3fvz_A 169 VQFSPS-GKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF 244 (329)
T ss_dssp EEECTT-SCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred EEEcCC-CCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence 999954 442 1222111 12244889999998 7777777889999999999888766542 345677
Q ss_pred EEeecCCCCCceEEEEE-------cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 009203 420 SVLPNPCDFNLFMVQTG-------TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIH 492 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~-------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~ 492 (540)
.+.++| + ..+.+. ..+..|++||..+++.... ++ ...++...+.+++++|+|.++++...++.|+
T Consensus 245 ~~~~~p-g---~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~-~~---~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 245 AISYIP-G---FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV-FK---PVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp EEEEET-T---EEEEEECCCCTTCSCCCCEEEEETTTCCEEEE-EC---CSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred eeeecC-C---EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE-Ec---CCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 888888 3 334333 3345899999988764332 21 1235667799999999998888888999999
Q ss_pred EEeccC
Q 009203 493 LFDIRY 498 (540)
Q Consensus 493 iwd~~~ 498 (540)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999874
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=1.6e-16 Score=155.54 Aligned_cols=237 Identities=12% Similarity=0.038 Sum_probs=157.3
Q ss_pred ceeEEEecCCCeEEEEeecCCC-CC--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 277 PEDIAWHPQGNSLFSAHTADSG-DS--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
+...+|+|||++|+.+ +. ++ .|.+||+.++ ........ +...+..+.|+| +++.|+.++.++.|++
T Consensus 38 ~~~~~~SpDg~~l~~~----~~~~g~~~l~~~d~~~g---~~~~lt~~---~~~~~~~~~~sp-dg~~l~~~~~~~~l~~ 106 (388)
T 3pe7_A 38 FYQKCFTRDGSKLLFG----GAFDGPWNYYLLDLNTQ---VATQLTEG---RGDNTFGGFLSP-DDDALFYVKDGRNLMR 106 (388)
T ss_dssp TTSCCBCTTSCEEEEE----ECTTSSCEEEEEETTTC---EEEECCCS---SCBCSSSCEECT-TSSEEEEEETTTEEEE
T ss_pred hcCccCCCCCCEEEEE----EcCCCCceEEEEeCCCC---ceEEeeeC---CCCCccceEEcC-CCCEEEEEeCCCeEEE
Confidence 3448999999998887 44 55 4888898875 33444332 334455678999 9999999999999999
Q ss_pred EecCCCCCccccceeecccCCcceeEEE--eccCCCEEEEEe----------------------CCCeEEEEECCCCCee
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVA--GMQQKQIVLSAG----------------------ADKRIIGFDAGVGRAD 409 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~--~s~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~ 409 (540)
||+.+++. ..+. ..+...+.... +++++.+++... .+..|++||+.+++..
T Consensus 107 ~d~~~g~~----~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 107 VDLATLEE----NVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EETTTCCE----EEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred EECCCCcc----eeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 99999874 2221 22444444343 489999887432 3467999999998876
Q ss_pred eeeccCccEEEEeecC-CCCCceEEEEEcC------CCeEEEEECCCCcceeeeeccccccCccc--cCeEEEEEcCCCC
Q 009203 410 FKHQIESKCMSVLPNP-CDFNLFMVQTGTP------GRQLRLYDIRLRQTEIHAFGWKQESSESQ--SALINQSWSPDGL 480 (540)
Q Consensus 410 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~ 480 (540)
........+..+.|+| ++ ..|+.... ...|.++|........ +..+. ..+..++|+|||+
T Consensus 182 ~l~~~~~~~~~~~~sp~dg---~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~--------l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDD---STVAFCHEGPHDLVDARMWLINEDGTNMRK--------VKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EEEEESSCEEEEEEETTEE---EEEEEEECSCTTTSSCSEEEEETTSCCCEE--------SCCCCTTEEEEEEEECTTSS
T ss_pred EeecCCccccccEECCCCC---CEEEEEEecCCCCCcceEEEEeCCCCceEE--------eeeCCCCcccccceECCCCC
Confidence 6656666778899999 76 56665554 3378888887554321 11222 3577889999999
Q ss_pred EEEEEeC-CC----cEEEEeccCCCCcccccccccccc---eeEEEEcCCCCEEEEE---------EcCCcEEEEeC
Q 009203 481 YITSGSA-DP----VIHLFDIRYSANKPSQSIRAHQKR---VFKAVWHYSHPLLISI---------SSDLNIGLHKI 540 (540)
Q Consensus 481 ~l~sg~~-dg----~i~iwd~~~~~~~~~~~~~~h~~~---i~~l~~s~~~~~l~s~---------~~dg~v~iw~l 540 (540)
.|+..+. ++ .|++||+.++..+.+..+.++... ...++|+|||+.|+.. ..+..|++||+
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~ 327 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM 327 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence 8765443 22 399999997432334344332111 2234799999977754 45678999985
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=4.1e-14 Score=132.83 Aligned_cols=279 Identities=9% Similarity=0.011 Sum_probs=193.6
Q ss_pred ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d 299 (540)
..+...+.+++++++ |.++++...++.|.+||.. +.. ..+.. ..+...+.++++.++|.++++. ..+
T Consensus 11 ~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~-~~~~~------~~~~~~~~~i~~~~~g~l~v~~----~~~ 77 (299)
T 2z2n_A 11 TNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKI-TEYPL------PTPDAKVMCLTISSDGEVWFTE----NAA 77 (299)
T ss_dssp CSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCE-EEEEC------SSTTCCEEEEEECTTSCEEEEE----TTT
T ss_pred CCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCe-EEecC------CcccCceeeEEECCCCCEEEeC----CCC
Confidence 345578999999996 8877777668899999987 432 22211 1234568899999999988887 778
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
+.|..||.. +. ...+.. +.....+.++++.+ ++.++++...++.|.+||. ++.. ...........+.+
T Consensus 78 ~~i~~~~~~-g~----~~~~~~-~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~----~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 78 NKIGRITKK-GI----IKEYTL-PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKI----REYELPNKGSYPSF 145 (299)
T ss_dssp TEEEEECTT-SC----EEEEEC-SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE----EEEECSSTTCCEEE
T ss_pred CeEEEECCC-Cc----EEEEeC-CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCE----EEecCCCCCCCCce
Confidence 899999986 31 222221 11234689999999 8888888777889999998 5442 22222224567899
Q ss_pred EEeccCCCEEEEEeCCCeEEEEECCCCCeeee-e-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-H-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457 (540)
Q Consensus 380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 457 (540)
+++.++|.++++...++.|..||. +++.... . ........+++++++ .++++...++.|.+||. ++.... +
T Consensus 146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~-~g~~~~--~ 218 (299)
T 2z2n_A 146 ITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD---ALWFVEIIGNKIGRITT-SGEITE--F 218 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS---SEEEEETTTTEEEEECT-TCCEEE--E
T ss_pred EEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC---CEEEEccCCceEEEECC-CCcEEE--E
Confidence 999999988887777889999999 6665432 1 223456788888876 46666667889999999 554222 1
Q ss_pred ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-cccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203 458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-SIRAHQKRVFKAVWHYSHPLLISISSDLNIG 536 (540)
Q Consensus 458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~ 536 (540)
....+...+.+++++++|+++++...++.|.+||.. +.... .+..+...+.++++ ++|.++++.+ .+.|.
T Consensus 219 ----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 219 ----KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN---NIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp ----ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT---TEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred ----ECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC---CceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 122345678999999999977776678899999984 33211 12344567899999 8888777765 44454
Q ss_pred EEe
Q 009203 537 LHK 539 (540)
Q Consensus 537 iw~ 539 (540)
.++
T Consensus 290 ~~~ 292 (299)
T 2z2n_A 290 KLT 292 (299)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=2.9e-15 Score=144.12 Aligned_cols=258 Identities=12% Similarity=0.090 Sum_probs=166.1
Q ss_pred CceEEEEEecCCCcEEEEE---------eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203 224 RKLRSLSLNPVNEQLFVTS---------ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT 294 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg---------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~ 294 (540)
..+..+++ | |+.++.. ..++.|.+|++.+++. ..+ ..+..++|+|||+.|+.+..
T Consensus 15 ~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l------------~~~~~~~~SpDg~~la~~~~ 78 (347)
T 2gop_A 15 AYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI------------ENATMPRISPDGKKIAFMRA 78 (347)
T ss_dssp CEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE------------ESCEEEEECTTSSEEEEEEE
T ss_pred EEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc------------ccCCCeEECCCCCEEEEEEe
Confidence 34666777 5 5555543 2257799999987652 222 23678999999999988722
Q ss_pred cC-CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-------------------------
Q 009203 295 AD-SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD------------------------- 348 (540)
Q Consensus 295 ~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------------------------- 348 (540)
.+ .....|.+||+.++ ........ .. +..++|+| +++.|+.++.+
T Consensus 79 ~~~~~~~~l~~~~~~~g---~~~~l~~~----~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 79 NEEKKVSEIWVADLETL---SSKKILEA----KN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp ETTTTEEEEEEEETTTT---EEEEEEEE----SE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------
T ss_pred ccCCCcceEEEEECCCC---ceEEEEcC----CC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 11 02234778888765 33333322 23 89999999 99888887642
Q ss_pred --CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC---------eEEEEECCCCCeeeeeccCcc
Q 009203 349 --HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK---------RIIGFDAGVGRADFKHQIESK 417 (540)
Q Consensus 349 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~ 417 (540)
..|++||+.+++. ...+.. . .+..++|+|+| +++++..++ .|.++| +++....... ..
T Consensus 150 ~~~~l~~~d~~~~~~---~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~ 218 (347)
T 2gop_A 150 EKTTFWIFDTESEEV---IEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VS 218 (347)
T ss_dssp CEEEEEEEETTTTEE---EEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ES
T ss_pred ccceEEEEECCCCeE---EeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cc
Confidence 5699999988763 123322 2 68899999999 777775542 455556 4544322222 33
Q ss_pred EEEEeecCCCCCceEEEEEcCC--------CeEEEEECCCCcceeeeeccccccCccccCeEE-EEEcCCCCEEEEEeCC
Q 009203 418 CMSVLPNPCDFNLFMVQTGTPG--------RQLRLYDIRLRQTEIHAFGWKQESSESQSALIN-QSWSPDGLYITSGSAD 488 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~sg~~d 488 (540)
...+ +|++ ..|+.++.+ ..|.+|| +++. .. ...++...+.. +.|+ +| ++++++.+
T Consensus 219 ~~~~--spdg---~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~------l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 219 FYAV--DSDG---ERILLYGKPEKKYMSEHNKLYIYD--GKEV-MG------ILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEE--EECS---SCEEEEECCSSSCCCSSCEEEEEC--SSCE-EE------SSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred eeeE--CCCC---CEEEEEEccccCCccccceEEEEC--CCce-Ee------ccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 3333 6766 455554432 4688888 3332 11 22345667876 8999 88 88999999
Q ss_pred CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE-EEEe
Q 009203 489 PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI-GLHK 539 (540)
Q Consensus 489 g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v-~iw~ 539 (540)
+.++|| +.+ +... .+..+.+.|.+++|+| .++++++.++.. .||.
T Consensus 283 ~~~~l~-~~~--g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 283 GSVNLY-IWD--GEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp TEEEEE-EES--SSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred CcEEEE-EcC--CceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 999999 884 4443 3334577899999999 677777777765 6774
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=3.9e-16 Score=164.15 Aligned_cols=254 Identities=11% Similarity=0.055 Sum_probs=154.2
Q ss_pred cccccCceE---------EEEEe--cCCCcE-EEEEeC-CceEEEEEcC--CCCCcceeecccccCCCCCCCCceeEEEe
Q 009203 219 SSLHKRKLR---------SLSLN--PVNEQL-FVTSAL-DGVIRLWQLQ--SRGSGASLLSTTDCLSPKHRRWPEDIAWH 283 (540)
Q Consensus 219 ~~~h~~~V~---------~l~~s--pd~~~~-l~tg~~-dg~v~iw~~~--~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 283 (540)
+..|...+. ...|+ || |+. |+.++. +..|.+|++. .......+.... ...|...+.+++|+
T Consensus 63 l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~s 138 (662)
T 3azo_A 63 ALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS---AVGGGLRWADPVLL 138 (662)
T ss_dssp SSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC---CSTTCEEEEEEEEE
T ss_pred eCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc---cCCCCccccCcEEC
Confidence 445555555 66666 97 565 665543 4556666654 202223331100 01156678899999
Q ss_pred cCCCeEEEEeecCCCC----------CeEEEEecCCCCC---ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-
Q 009203 284 PQGNSLFSAHTADSGD----------SQISVLNLNKTKG---RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH- 349 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d----------~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg- 349 (540)
|||+.|+++ +.+ ..|++||+.++.. ......... +...+..++|+| ||++|+.++.++
T Consensus 139 pDg~~l~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~Sp-DG~~la~~~~~~~ 210 (662)
T 3azo_A 139 PERGEVWCM----AEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDD---AHRFVTGPRLSP-DGRQAVWLAWDHP 210 (662)
T ss_dssp TTTTEEEEE----EEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCS---CSSEECCCEECT-TSSEEEEEEECTT
T ss_pred CCCCEEEEE----EecccCCCCCCceeEEEEEECCCCccccCCceeEEEec---CCCcccCceECC-CCCEEEEEECCCC
Confidence 999999988 544 5899999987200 022222202 235688899999 999998877553
Q ss_pred -------cEEEEecC-CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC--eEEEEECCCCCeeeeeccCcc--
Q 009203 350 -------AVVLWSER-DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK--RIIGFDAGVGRADFKHQIESK-- 417 (540)
Q Consensus 350 -------~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-- 417 (540)
.|++||+. ++.. .....+. ..+...+..+.|+|||+++++++.++ .|.+||+.+++..........
T Consensus 211 ~~~~~~~~i~~~d~~~~g~~-~~~~~l~-~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 211 RMPWEGTELKTARVTEDGRF-ADTRTLL-GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp CCTTTCEEEEEEEECTTSCE-EEEEEEE-EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred CCCCCCcEEEEEEECCCCcc-cccEEeC-CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 79999998 4521 0022222 23567899999999999888888888 677778766665433222111
Q ss_pred -------EEEEeecCCCCCceEEEEEcCCCeEEEE--ECCCCcceeeeeccccccCccccCeEEE-EEcCCCCEEEEEeC
Q 009203 418 -------CMSVLPNPCDFNLFMVQTGTPGRQLRLY--DIRLRQTEIHAFGWKQESSESQSALINQ-SWSPDGLYITSGSA 487 (540)
Q Consensus 418 -------~~~~~~~~~~~~~~~l~~~~~dg~v~i~--d~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~sg~~ 487 (540)
+..+.++|++ .++++++. +.++|| |+.++. .. .+..+...+..+ +++.+.-++++++.
T Consensus 289 ~p~w~~~~~~~~~~~~~---~~~~~~~~-~~~~l~~~d~~~~~--~~------~l~~~~~~~~~~~s~~~~~~~~~~~~~ 356 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANG---LIAVVHGK-GAAVLGILDPESGE--LV------DAAGPWTEWAATLTVSGTRAVGVAASP 356 (662)
T ss_dssp CCCCSTTCCSEEECTTS---CEEEEEBS-SSCEEEEEETTTTE--EE------ECCSSCCEEEEEEEEETTEEEEEEEET
T ss_pred CccccccCceEeEeCCC---EEEEEEEc-CccEEEEEECCCCc--EE------EecCCCCeEEEEEecCCCEEEEEEcCC
Confidence 3456677766 68888888 999999 554443 22 234455567766 55433333445555
Q ss_pred CCc--EEEEeccC
Q 009203 488 DPV--IHLFDIRY 498 (540)
Q Consensus 488 dg~--i~iwd~~~ 498 (540)
+.. |++||+.+
T Consensus 357 ~~~~~i~~~d~~~ 369 (662)
T 3azo_A 357 RTAYEVVELDTVT 369 (662)
T ss_dssp TEEEEEEEEETTT
T ss_pred CCCCEEEEEECCC
Confidence 544 55555544
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=2.2e-14 Score=145.56 Aligned_cols=315 Identities=9% Similarity=0.035 Sum_probs=202.9
Q ss_pred EEecCCCCeEEEeccc--hh---cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcC--CCCCcceeecccccCCCCC
Q 009203 201 VRTSASPATIHCHTSN--HV---SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ--SRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 201 ~~~~~~d~~i~~~~~~--~~---~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~h 273 (540)
+.....+++|.++|.. .+ +. ....+.++.|+|| |++|++++.|+.|.+||+. +.+.+.++.. +
T Consensus 170 ~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-------G- 239 (567)
T 1qks_A 170 SVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-------G- 239 (567)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEEC-------C-
T ss_pred EEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEec-------C-
Confidence 4556678888888765 11 22 2235679999996 8889999999999999995 6555544432 1
Q ss_pred CCCceeEEEe----cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC-------Cc-ccceeEEEEeCCCCCE
Q 009203 274 RRWPEDIAWH----PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP-------HV-KGIINSIIFLPWENPC 341 (540)
Q Consensus 274 ~~~V~~~~~~----~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~-~~~v~~~~~~p~~~~~ 341 (540)
.....++|+ |||++++++. ..++.|.++|..+. +.+..+.... .| ...+..+.+++....+
T Consensus 240 -~~P~~ia~s~~~~pDGk~l~v~n---~~~~~v~ViD~~t~---~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 240 -SEARSIETSKMEGWEDKYAIAGA---YWPPQYVIMDGETL---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp -SEEEEEEECCSTTCTTTEEEEEE---EETTEEEEEETTTC---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred -CCCceeEEccccCCCCCEEEEEE---ccCCeEEEEECCCC---cEEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence 225689999 6999888872 46699999998876 3344333211 01 2257888888844555
Q ss_pred EEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeeeecc-Cc---
Q 009203 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFKHQI-ES--- 416 (540)
Q Consensus 342 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~--- 416 (540)
++....+|.|.++|...... .. ...........++.|+|+|++++++. .++.|.++|+.+++.+..... ..
T Consensus 313 vv~~~~~g~v~~vd~~~~~~---~~-v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph 388 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNN---LK-TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH 388 (567)
T ss_dssp EEEETTTTEEEEEETTCSSE---EE-EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred EEEecCCCeEEEEecCCCcc---ce-eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC
Confidence 66666779999999987542 11 11112334567889999999987765 578999999999887654433 11
Q ss_pred --cEEEEeecCCCCCceEEEEEc-CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC------
Q 009203 417 --KCMSVLPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA------ 487 (540)
Q Consensus 417 --~~~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~------ 487 (540)
....+ ++|++. .+++++. .++.|.++|..+.......+.....+......-..+..+|++++|.+...
T Consensus 389 pg~g~~~-~~p~~g--~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 389 PGRGANF-VHPTFG--PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp CTTCEEE-EETTTE--EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred Cccceee-ECCCCC--cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 12222 466531 3455553 56899999998733211111111122222223345778999999988663
Q ss_pred -CCcEEEEeccCCC----Cccccccc--------ccccceeEEEEcCCCCEEEEEE-----cCCcEEEEe
Q 009203 488 -DPVIHLFDIRYSA----NKPSQSIR--------AHQKRVFKAVWHYSHPLLISIS-----SDLNIGLHK 539 (540)
Q Consensus 488 -dg~i~iwd~~~~~----~~~~~~~~--------~h~~~i~~l~~s~~~~~l~s~~-----~dg~v~iw~ 539 (540)
.+.|.+||+.+.+ ...+..+. .....+..+.|+++|+.+..+. .++.|.|+|
T Consensus 466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 3589999998730 01112221 1234789999999998765553 368898887
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=1.5e-15 Score=160.34 Aligned_cols=288 Identities=9% Similarity=-0.020 Sum_probs=179.8
Q ss_pred cCCCcEEEEEeCCc---eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee-cCCCCCeEEEEecC
Q 009203 233 PVNEQLFVTSALDG---VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT-ADSGDSQISVLNLN 308 (540)
Q Consensus 233 pd~~~~l~tg~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-~~~~d~~i~vwd~~ 308 (540)
|| |.+++....++ .-.||....................+|...+.+++|||||++|+.+.. .|+.+..|++||+.
T Consensus 77 ~d-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 77 RR-NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EE-TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EE-CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 65 55555444333 345555432111122222222222466667899999999999886533 23556899999999
Q ss_pred CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc-------------EEEEecCCCCCccccceeecccCCc
Q 009203 309 KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA-------------VVLWSERDAEDSWKPKALHRNLHSS 375 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~ 375 (540)
++.... ...+. ......++|+| +++.|+.++.|.. |++|++.++.... ........+..
T Consensus 156 tg~~~~-~~~~~-----~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv~~~~~~~~ 227 (695)
T 2bkl_A 156 SGEWSK-VDVIE-----GGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-TVVHERTGDPT 227 (695)
T ss_dssp TCCBCS-SCCBS-----CCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-EEEECCCCCTT
T ss_pred CCCCcC-CcccC-----cccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-eEEEecCCCCE
Confidence 873210 00111 11126899999 9999999988776 9999998876210 11222233556
Q ss_pred ceeEEEeccCCCEEEEEeCCC----eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc---CCCeEEEEECC
Q 009203 376 AVMGVAGMQQKQIVLSAGADK----RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT---PGRQLRLYDIR 448 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~v~i~d~~ 448 (540)
.+.++.|+|||++|+.++.++ .|++||..++................+ +++ .+++... .++.|.+||+.
T Consensus 228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g---~l~~~s~~~~~~~~l~~~d~~ 303 (695)
T 2bkl_A 228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKD---RFYVLTDEGAPRQRVFEVDPA 303 (695)
T ss_dssp CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETT---EEEEEECTTCTTCEEEEEBTT
T ss_pred EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCC---cEEEEECCCCCCCEEEEEeCC
Confidence 788999999999998887766 688887765554333333333444444 444 3333333 35889999998
Q ss_pred CCcce-eeeeccccccCcc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCCE
Q 009203 449 LRQTE-IHAFGWKQESSES-QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHPL 525 (540)
Q Consensus 449 ~~~~~-~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~~ 525 (540)
++... ... ....+ ...+..++|+ ++.++++...|+..+||.++.. +.....+..+ .+.|..++++|+++.
T Consensus 304 ~~~~~~~~~-----l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 304 KPARASWKE-----IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDD 376 (695)
T ss_dssp BCSGGGCEE-----EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSE
T ss_pred CCCccCCeE-----EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCE
Confidence 76421 011 11122 4457888888 7778888999998888877632 4444555544 667888999999986
Q ss_pred EEEEE----cCCcEEEEeC
Q 009203 526 LISIS----SDLNIGLHKI 540 (540)
Q Consensus 526 l~s~~----~dg~v~iw~l 540 (540)
|+... ..++|++||+
T Consensus 377 l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp EEEEEEETTEEEEEEEEET
T ss_pred EEEEEcCCCCCCEEEEEEC
Confidence 66332 3478998885
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=1.4e-14 Score=137.95 Aligned_cols=264 Identities=9% Similarity=0.018 Sum_probs=174.7
Q ss_pred CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC
Q 009203 244 LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP 323 (540)
Q Consensus 244 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 323 (540)
.+++|.+||..+++....+...... .........+++. ++...++. ..++.|.+||..++ +.+..+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~--~~lg~~~~~i~~~-~~~lyv~~----~~~~~v~viD~~t~---~~~~~i~~-- 82 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANG--FKLGDVAQSMVIR-DGIGWIVV----NNSHVIFAIDINTF---KEVGRITG-- 82 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHS--SCCBSCEEEEEEE-TTEEEEEE----GGGTEEEEEETTTC---CEEEEEEC--
T ss_pred CCceEEEEECCCCEEhhhhHhhhcC--cccCccceEEEEE-CCEEEEEE----cCCCEEEEEECccc---EEEEEcCC--
Confidence 4889999999987754443211110 1122345677774 34445555 67899999999987 33444432
Q ss_pred CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc---cCCcceeEEEeccCCCEEEEEe--CCCeE
Q 009203 324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN---LHSSAVMGVAGMQQKQIVLSAG--ADKRI 398 (540)
Q Consensus 324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~--~dg~i 398 (540)
...+..+++++ ++.++++...++.|.+||..+++... .+... +.......+++ . +..++++. .++.|
T Consensus 83 --~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~---~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 83 --FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITG---YIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI 154 (328)
T ss_dssp --CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEE---EEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred --CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEE---EEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence 24588999988 77555555478999999999876421 22211 11125667777 3 44444444 48899
Q ss_pred EEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC----------CeEEEEECCCCcceeeeeccccccCcccc
Q 009203 399 IGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG----------RQLRLYDIRLRQTEIHAFGWKQESSESQS 468 (540)
Q Consensus 399 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 468 (540)
.+||+.+++.+...........+.++|++ .+++++..+ +.|.+||..+.+.... +. .. ...
T Consensus 155 ~viD~~t~~~~~~i~~g~~p~~i~~~~dG---~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~-~~----~~-~g~ 225 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIGIQPTSLVMDKYN---KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ-FK----FK-LGD 225 (328)
T ss_dssp EEEETTTTEEEEEEECSSCBCCCEECTTS---EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE-EE----CC-TTC
T ss_pred EEEECCCCeEEEEEEcCCCccceEEcCCC---CEEEEECCCccCCccccCCceEEEEECCCCeEEEE-Ee----cC-CCC
Confidence 99999999887766666666778888876 566665554 7899999987764322 11 11 123
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc--cccccccceeEEEEcC-CCCEEEEE----EcCCcEEEEeC
Q 009203 469 ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ--SIRAHQKRVFKAVWHY-SHPLLISI----SSDLNIGLHKI 540 (540)
Q Consensus 469 ~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~h~~~i~~l~~s~-~~~~l~s~----~~dg~v~iw~l 540 (540)
.+..++|+|+++.|+++.. .|.+||..+ ++... .+..+.....+++++| ++.++++. ..++.|.+||.
T Consensus 226 ~p~~la~~~d~~~lyv~~~--~v~~~d~~t--~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 226 WPSEVQLNGTRDTLYWINN--DIWRMPVEA--DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp CCEEEEECTTSCEEEEESS--SEEEEETTC--SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred CceeEEEecCCCEEEEEcc--EEEEEECCC--CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 6789999999999888755 899999987 33321 2222245689999999 55666666 57889999974
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=1.4e-14 Score=136.00 Aligned_cols=230 Identities=11% Similarity=0.019 Sum_probs=164.9
Q ss_pred CCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203 274 RRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 274 ~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
.....+++|+|+|+ +++++ ..++.|..||..++ ...+.. +...+.+++++| ++.++++...++.|.
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~----~~~~~i~~~~~~~~-----~~~~~~---~~~~~~~l~~~~-dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSD----VRQNRTWAWSDDGQ-----LSPEMH---PSHHQNGHCLNK-QGHLIACSHGLRRLE 93 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEE----GGGTEEEEEETTSC-----EEEEES---SCSSEEEEEECT-TCCEEEEETTTTEEE
T ss_pred CccccCCeEeCCCCEEEEEe----CCCCEEEEEECCCC-----eEEEEC---CCCCcceeeECC-CCcEEEEecCCCeEE
Confidence 34467899999998 67777 78999999999864 333332 245689999999 898888777778999
Q ss_pred EEecCCCCCccccceeec---ccCCcceeEEEeccCCCEEEEE----e-------------CCCeEEEEECCCCCeeeee
Q 009203 353 LWSERDAEDSWKPKALHR---NLHSSAVMGVAGMQQKQIVLSA----G-------------ADKRIIGFDAGVGRADFKH 412 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~----~-------------~dg~i~iwd~~~~~~~~~~ 412 (540)
+||..+++. ..+.. ......+.+++++|+|+++++. + ..+.|..+|.. ++.....
T Consensus 94 ~~d~~~g~~----~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (296)
T 3e5z_A 94 RQREPGGEW----ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI 168 (296)
T ss_dssp EECSTTCCE----EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE
T ss_pred EEcCCCCcE----EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee
Confidence 999987763 22211 1122356789999999988873 2 13467777766 5544334
Q ss_pred ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC-CCcc-e-eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203 413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR-LRQT-E-IHAFGWKQESSESQSALINQSWSPDGLYITSGSADP 489 (540)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~-~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg 489 (540)
........++++|++ ..+++.+.++.|.+||+. ++.. . ...+ ..+...+.+++++++|+++++. ++
T Consensus 169 ~~~~~~~gi~~s~dg---~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~------~~~~~~p~~i~~d~~G~l~v~~--~~ 237 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSG---NLLVSDTGDNATHRYCLNARGETEYQGVHF------TVEPGKTDGLRVDAGGLIWASA--GD 237 (296)
T ss_dssp CCCSSEEEEEECTTS---CEEEEETTTTEEEEEEECSSSCEEEEEEEE------CCSSSCCCSEEEBTTSCEEEEE--TT
T ss_pred cCCCCCccEEECCCC---CEEEEeCCCCeEEEEEECCCCcCcCCCeEe------eCCCCCCCeEEECCCCCEEEEc--CC
Confidence 444566789999987 566888888999999997 3332 1 1111 1234567789999999877666 78
Q ss_pred cEEEEeccCCCCcccccccccccceeEEEE-cCCCCEEEEEEcCCcEE
Q 009203 490 VIHLFDIRYSANKPSQSIRAHQKRVFKAVW-HYSHPLLISISSDLNIG 536 (540)
Q Consensus 490 ~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~-s~~~~~l~s~~~dg~v~ 536 (540)
.|.+||.. ++.+..+..+.. +++++| .|+++.|++++.++.++
T Consensus 238 ~v~~~~~~---g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 238 GVHVLTPD---GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp EEEEECTT---SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred eEEEECCC---CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 89999987 566777777777 999999 58999888888775443
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=4.8e-15 Score=156.86 Aligned_cols=250 Identities=8% Similarity=-0.079 Sum_probs=162.6
Q ss_pred CCCCCCceeEEEecCCCeEEEEeecC-CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203 271 PKHRRWPEDIAWHPQGNSLFSAHTAD-SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH 349 (540)
Q Consensus 271 ~~h~~~V~~~~~~~~~~~l~s~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 349 (540)
.+|...+..++|||||++|+.+...+ +....|++||+.++. ....... ...+.+++|+| |++.|+.++.++
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~---~~~~~~~----~~~~~~~~wsp-Dg~~l~~~~~~~ 192 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK---ELPDVLE----RVKFSCMAWTH-DGKGMFYNAYPQ 192 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE---EEEEEEE----EECSCCEEECT-TSSEEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---CCccccc----CcccceEEEEe-CCCEEEEEEECC
Confidence 35555688999999999998874321 222389999999872 2322111 12367899999 999999988876
Q ss_pred c----------------EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-----CCeEEEEECCC---
Q 009203 350 A----------------VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-----DKRIIGFDAGV--- 405 (540)
Q Consensus 350 ~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-----dg~i~iwd~~~--- 405 (540)
. |++|++.++.... ........+...+.++.|+|||++|+.++. +..|++||+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred ccccccccccccCCCCEEEEEECCCCcccc-eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 6 9999998875210 111122234566889999999999988765 56899999986
Q ss_pred ---CC--eeeeeccCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCCcce-eeeeccccccCccc--cCeEEEE
Q 009203 406 ---GR--ADFKHQIESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLRQTE-IHAFGWKQESSESQ--SALINQS 474 (540)
Q Consensus 406 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~--~~v~~~~ 474 (540)
+. ............. .++|++. .+++.+.. .+.|.+||+.++... .. .+..|. ..+..++
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~------~l~~~~~~~~~~~~~ 342 (710)
T 2xdw_A 272 GITGILKWVKLIDNFEGEYD-YVTNEGT--VFTFKTNRHSPNYRLINIDFTDPEESKWK------VLVPEHEKDVLEWVA 342 (710)
T ss_dssp SSCSSCCCEEEECSSSSCEE-EEEEETT--EEEEEECTTCTTCEEEEEETTSCCGGGCE------EEECCCSSCEEEEEE
T ss_pred ccCCccceEEeeCCCCcEEE-EEeccCC--EEEEEECCCCCCCEEEEEeCCCCCcccce------eccCCCCCCeEEEEE
Confidence 42 2222222222222 3556552 23333332 347999999876421 11 111222 2578899
Q ss_pred EcCCCCEEEEEeCCCc--EEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE-E---cCCcEEEEeC
Q 009203 475 WSPDGLYITSGSADPV--IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI-S---SDLNIGLHKI 540 (540)
Q Consensus 475 ~sp~g~~l~sg~~dg~--i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~-~---~dg~v~iw~l 540 (540)
|++++.++++...|+. |++|++.+ +..+..+..+.+.|..+.++|++..|+.. + ..++|++||+
T Consensus 343 ~~~~~~lv~~~~~~g~~~l~~~~~~~--g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 343 CVRSNFLVLCYLHDVKNTLQLHDLAT--GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETTT--CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred EEcCCEEEEEEEECCEEEEEEEECCC--CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 9988888888888885 45566644 55566677777789999999999765533 2 3468888874
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=9.9e-16 Score=150.21 Aligned_cols=240 Identities=14% Similarity=0.084 Sum_probs=155.3
Q ss_pred CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV 352 (540)
Q Consensus 273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 352 (540)
|...+..++|+|||++|+.+... ..+..|.+||+.++ ........ .......+.|+| +++.|+.++.++.|+
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~---~~~~l~~~---~~~~~~~~~~sp-dg~~l~~~~~~~~l~ 105 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQ---QAVQLTEG---KGDNTFGGFIST-DERAFFYVKNELNLM 105 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTT---EEEECCCS---SCBCTTTCEECT-TSSEEEEEETTTEEE
T ss_pred cceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCC---cEEEeecC---CCCccccceECC-CCCEEEEEEcCCcEE
Confidence 34457889999999998776211 12347888898875 32333221 122233478999 999999999999999
Q ss_pred EEecCCCCCccccceeecccCCcceeE-------------------EEeccCCCEEEEE-----eCCCeEEEEECCCCCe
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMG-------------------VAGMQQKQIVLSA-----GADKRIIGFDAGVGRA 408 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------l~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~ 408 (540)
+||+.+++. ..+.. .+...... +.|+|+++.++.. ..+..|++||+.+++.
T Consensus 106 ~~d~~~~~~----~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (396)
T 3c5m_A 106 KVDLETLEE----QVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL 180 (396)
T ss_dssp EEETTTCCE----EEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred EEECCCCCc----EEEEe-cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence 999988763 22221 12222222 3567788776654 3566899999998887
Q ss_pred eeeeccCccEEEEeecC-CCCCceEEEEEcCC------CeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCC
Q 009203 409 DFKHQIESKCMSVLPNP-CDFNLFMVQTGTPG------RQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGL 480 (540)
Q Consensus 409 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~ 480 (540)
.........+..+.|+| ++ ..|+..+.+ ..|.+||+........ .... ...+..++|+|||+
T Consensus 181 ~~~~~~~~~~~~~~~sp~dg---~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 181 EVIHQDTAWLGHPIYRPFDD---STVGFCHEGPHDLVDARMWLVNEDGSNVRKI-------KEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp EEEEEESSCEEEEEEETTEE---EEEEEEECSCSSSCSCCCEEEETTSCCCEES-------SCCCTTEEEEEEEECTTSS
T ss_pred EeeccCCcccccceECCCCC---CEEEEEecCCCCCCCceEEEEECCCCceeEe-------eccCCCccccceEECCCCC
Confidence 65555566778889999 55 344444333 4688899875542111 1111 23578899999999
Q ss_pred EEEEEeCC-----CcEEEEeccCCCCcccccccccccceeEEEEcC-CCCEEEEEE----------------cCCcEEEE
Q 009203 481 YITSGSAD-----PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY-SHPLLISIS----------------SDLNIGLH 538 (540)
Q Consensus 481 ~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~-~~~~l~s~~----------------~dg~v~iw 538 (540)
+|+.++.+ +.|++||+.++....+..+.+ .. +.|+| ||++|++++ .++.|++|
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~ 325 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVL 325 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEE
T ss_pred EEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEE
Confidence 88776543 349999998632222222222 23 89999 999888765 34789998
Q ss_pred eC
Q 009203 539 KI 540 (540)
Q Consensus 539 ~l 540 (540)
|+
T Consensus 326 d~ 327 (396)
T 3c5m_A 326 NT 327 (396)
T ss_dssp ET
T ss_pred ec
Confidence 74
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=1.5e-14 Score=135.83 Aligned_cols=238 Identities=9% Similarity=0.061 Sum_probs=160.9
Q ss_pred ccccCceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 220 SLHKRKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 220 ~~h~~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
..+.....+++|+|+ ++ +++++..++.|..|+..++ ...+. .+...+.+++|+++|+++++. ..
T Consensus 24 ~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~~~~--~~~~~--------~~~~~~~~l~~~~dg~l~v~~----~~ 88 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSDDGQ--LSPEM--------HPSHHQNGHCLNKQGHLIACS----HG 88 (296)
T ss_dssp ECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEETTSC--EEEEE--------SSCSSEEEEEECTTCCEEEEE----TT
T ss_pred ecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEECCCC--eEEEE--------CCCCCcceeeECCCCcEEEEe----cC
Confidence 345567899999997 65 8889999999999999875 33332 344568899999999988887 77
Q ss_pred CCeEEEEecCCCCCceeEEeecCC-CCcccceeEEEEeCCCCCEEEEE----e-------------cCCcEEEEecCCCC
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDK-PHVKGIINSIIFLPWENPCFATG----G-------------SDHAVVLWSERDAE 360 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~----~-------------~dg~i~iwd~~~~~ 360 (540)
++.|.+||..++.. ....... ......+..++++| ++.++++. + ..+.|..++.. +.
T Consensus 89 ~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (296)
T 3e5z_A 89 LRRLERQREPGGEW---ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT 163 (296)
T ss_dssp TTEEEEECSTTCCE---EEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC
T ss_pred CCeEEEEcCCCCcE---EEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC
Confidence 89999999976632 2221110 01123467899999 99988873 2 12456666655 33
Q ss_pred CccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC-CCCe---eeee-ccCccEEEEeecCCCCCceEEEE
Q 009203 361 DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG-VGRA---DFKH-QIESKCMSVLPNPCDFNLFMVQT 435 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 435 (540)
...+ ..+......++|+|+|+.+++.+.++.|.+||+. .+.. .... .....+..+++++++ .++++
T Consensus 164 ----~~~~--~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G---~l~v~ 234 (296)
T 3e5z_A 164 ----LSAP--IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG---LIWAS 234 (296)
T ss_dssp ----EEEE--ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS---CEEEE
T ss_pred ----EEEe--ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC---CEEEE
Confidence 2222 2355667899999999998777788999999987 4443 1111 123344567888877 44444
Q ss_pred EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEE-cCCCCEEEEEeCCCcEEEEeccC
Q 009203 436 GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSW-SPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 436 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
. ++.|.+||.. ++. ... +..+.. +++++| +|+++.|++++.++ +.-++..+
T Consensus 235 ~--~~~v~~~~~~-g~~-~~~------~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 235 A--GDGVHVLTPD-GDE-LGR------VLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp E--TTEEEEECTT-SCE-EEE------EECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred c--CCeEEEECCC-CCE-EEE------EECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 4 7899999987 332 221 122344 889999 68999998888764 44555553
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=4e-14 Score=135.29 Aligned_cols=254 Identities=15% Similarity=0.092 Sum_probs=165.6
Q ss_pred CCCeEEEeccc--hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe
Q 009203 206 SPATIHCHTSN--HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH 283 (540)
Q Consensus 206 ~d~~i~~~~~~--~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 283 (540)
.+..++.|... ..+.++...+.+++|+|+ +++++++..++.|.+||..+++..... ..+...+.+++|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~--------~~~~~~~~~i~~~ 95 (333)
T 2dg1_A 25 SESELQTITAEPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPF--------VSHKANPAAIKIH 95 (333)
T ss_dssp CGGGSCEEECEEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEE--------ECSSSSEEEEEEC
T ss_pred ecccCcccccceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEe--------eCCCCCcceEEEC
Confidence 34555555433 234567778899999996 888888888999999999876533222 1234568999999
Q ss_pred cCCCeEEEEeecCCCC----CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec------CCcEEE
Q 009203 284 PQGNSLFSAHTADSGD----SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS------DHAVVL 353 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------dg~i~i 353 (540)
++|+++++. ..+ +.|.+||..++.. ...+... .....+.+++++| ++.++++... .+.|..
T Consensus 96 ~dg~l~v~~----~~~~~~~~~i~~~d~~~~~~---~~~~~~~-~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~ 166 (333)
T 2dg1_A 96 KDGRLFVCY----LGDFKSTGGIFAATENGDNL---QDIIEDL-STAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYY 166 (333)
T ss_dssp TTSCEEEEE----CTTSSSCCEEEEECTTSCSC---EEEECSS-SSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEE
T ss_pred CCCcEEEEe----CCCCCCCceEEEEeCCCCEE---EEEEccC-ccCCcccceEECC-CCCEEEEeccccccCCCceEEE
Confidence 999988876 555 6899999987532 2222211 1235689999999 8887776653 255666
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEE-EeCCCeEEEEECCC-CCeeee--------eccCccEEEEee
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDAGV-GRADFK--------HQIESKCMSVLP 423 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~~~-~~~~~~--------~~~~~~~~~~~~ 423 (540)
||..+++. ..+. .....+.+++|+|+|+.|+. .+.++.|.+||+.. +..+.. .........+++
T Consensus 167 ~~~~~~~~----~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 240 (333)
T 2dg1_A 167 VSPDFRTV----TPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 240 (333)
T ss_dssp ECTTSCCE----EEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred EeCCCCEE----EEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEE
Confidence 66655442 2221 12345789999999986654 45678999999964 332211 111135667888
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD 488 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d 488 (540)
++++ .++++...++.|.+||.. ++. ...+.......+|...+.+++|+||++.|+.++.+
T Consensus 241 d~~G---~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 241 DSDD---NLYVAMYGQGRVLVFNKR-GYP-IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp BTTC---CEEEEEETTTEEEEECTT-SCE-EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCC---CEEEEEcCCCEEEEECCC-CCE-EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 8877 566776778899999985 332 22221111111233368899999998777666554
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=2.1e-14 Score=151.86 Aligned_cols=257 Identities=12% Similarity=0.019 Sum_probs=169.1
Q ss_pred EEeccchhcccccCceEEEEEecCCCcEEEEEeCCc-----eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC
Q 009203 211 HCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDG-----VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ 285 (540)
Q Consensus 211 ~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 285 (540)
.+.+...+-.+|...+..++|||| |++||.++.++ .|++||+.+++....... + ..+..++|+||
T Consensus 112 ~lld~~~l~~~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--------~-~~~~~~~wspD 181 (710)
T 2xdw_A 112 VFLDPNILSDDGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--------R-VKFSCMAWTHD 181 (710)
T ss_dssp EEECGGGGCTTSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--------E-ECSCCEEECTT
T ss_pred EEECHHHhccCCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--------C-cccceEEEEeC
Confidence 344555555667778999999997 88887765433 899999998875432211 1 12568999999
Q ss_pred CCeEEEEeecCCCCCe----------------EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec--
Q 009203 286 GNSLFSAHTADSGDSQ----------------ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-- 347 (540)
Q Consensus 286 ~~~l~s~~~~~~~d~~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-- 347 (540)
|+.|+.+ +.++. |++|++.++.... ...+.. ..+...+..+.|+| ++++|+.++.
T Consensus 182 g~~l~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~~~-~~~~~~~~~~~~Sp-Dg~~l~~~~~~~ 254 (710)
T 2xdw_A 182 GKGMFYN----AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEF-PDEPKWMGGAELSD-DGRYVLLSIREG 254 (710)
T ss_dssp SSEEEEE----ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECC-TTCTTCEEEEEECT-TSCEEEEEEECS
T ss_pred CCEEEEE----EECCccccccccccccCCCCEEEEEECCCCcccc-eEEecc-CCCCeEEEEEEEcC-CCCEEEEEEEcc
Confidence 9999887 44443 9999998763211 222222 12345578999999 9998887765
Q ss_pred ---CCcEEEEecCC------CCCccccceeecccCCcceeEEEeccCCCEEEEEeCC----CeEEEEECCCCCe---eee
Q 009203 348 ---DHAVVLWSERD------AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD----KRIIGFDAGVGRA---DFK 411 (540)
Q Consensus 348 ---dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~---~~~ 411 (540)
+..|++||+.+ +.. ....+. .+...+.. .|+++|..|+..+.. +.|.+||+.++.. ...
T Consensus 255 ~~~~~~l~~~d~~~~~~~~~~~~--~~~~l~--~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 329 (710)
T 2xdw_A 255 CDPVNRLWYCDLQQESNGITGIL--KWVKLI--DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL 329 (710)
T ss_dssp SSSCCEEEEEEGGGSSSSSCSSC--CCEEEE--CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred CCCccEEEEEECcccccccCCcc--ceEEee--CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec
Confidence 56899999986 421 123332 24444444 488899888776653 3699999987642 111
Q ss_pred ecc-C-ccEEEEeecCCCCCceEEEEEcCCCe--EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-
Q 009203 412 HQI-E-SKCMSVLPNPCDFNLFMVQTGTPGRQ--LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS- 486 (540)
Q Consensus 412 ~~~-~-~~~~~~~~~~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~- 486 (540)
... . ..+..+.+.+.+ .++++...++. |.+||+.+++.. . .+..+.+.+..++++|++..|+...
T Consensus 330 ~~~~~~~~~~~~~~~~~~---~lv~~~~~~g~~~l~~~~~~~g~~~-~------~l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVRSN---FLVLCYLHDVKNTLQLHDLATGALL-K------IFPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp ECCCSSCEEEEEEEETTT---EEEEEEEETTEEEEEEEETTTCCEE-E------EECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred cCCCCCCeEEEEEEEcCC---EEEEEEEECCEEEEEEEECCCCCEE-E------ecCCCCceEEEEecCCCCCEEEEEEe
Confidence 222 2 345667777554 67888888875 566777555422 2 1233456788999999997766332
Q ss_pred ---CCCcEEEEeccCC
Q 009203 487 ---ADPVIHLFDIRYS 499 (540)
Q Consensus 487 ---~dg~i~iwd~~~~ 499 (540)
..+.|++||+.++
T Consensus 400 s~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 400 SFLSPGIIYHCDLTKE 415 (710)
T ss_dssp CSSCCCEEEEEETTSS
T ss_pred CCCCCCEEEEEECCCC
Confidence 3578999999874
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=4.9e-14 Score=130.26 Aligned_cols=236 Identities=10% Similarity=-0.002 Sum_probs=165.0
Q ss_pred CceeEEEecCCCeEE-EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 276 WPEDIAWHPQGNSLF-SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~-s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
...+++++++|++++ +. ..++.|.+||..+.. ...+.. .....+.++++++ ++.++++.. ++.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~----~~~~~i~~~~~~~~~----~~~~~~--~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSE----GMYGRVVKLATGSTG----TTVLPF--NGLYQPQGLAVDG-AGTVYVTDF-NNRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEEC----SSSCEEEEECC---------EECCC--CSCCSCCCEEECT-TCCEEEEET-TTEEEEE
T ss_pred CccceEECCCCCEEEEcc----CCCCcEEEecCCCcc----cceEee--CCcCCcceeEECC-CCCEEEEcC-CCEEEEE
Confidence 567899999998776 54 678899999976541 122211 1224578999999 888666665 8899999
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEE
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMV 433 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 433 (540)
|..+... ..+. ......+.+++++++|+++++...++.|.+|+..+....... ........+++++++ .++
T Consensus 93 d~~~~~~----~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g---~l~ 164 (270)
T 1rwi_B 93 AAGSNNQ----TVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG---NVY 164 (270)
T ss_dssp CTTCSCC----EECC-CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC---CEE
T ss_pred eCCCceE----eeee-cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC---CEE
Confidence 9877542 1111 123356899999999998887777889999987655443222 222355678888876 567
Q ss_pred EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccc
Q 009203 434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKR 513 (540)
Q Consensus 434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 513 (540)
++...++.|.+||.......... ..+...+.+++++++|.++++...++.|.+|+... .........+...
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~--~~~~~~~~~~~~~ 235 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLP-------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--TTSTVLPFTGLNT 235 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECC-------CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC--SCCEECCCCSCSC
T ss_pred EEECCCCEEEEEecCCCceEeec-------ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC--CcceeeccCCCCC
Confidence 77777889999998865532211 12225688999999998888877889999999875 2222222233356
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 514 VFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 514 i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+.+++++++|+++++...++.|+++++
T Consensus 236 p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 236 PLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred ceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 899999999999999999999999974
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=1.1e-13 Score=127.96 Aligned_cols=238 Identities=9% Similarity=0.066 Sum_probs=167.4
Q ss_pred ceEEEEEecCCCcEEE-EEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 225 KLRSLSLNPVNEQLFV-TSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~-tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
...+++++|+ +.+++ +...++.|.+|+..+... .... ..+...+.+++++++|+++++. . ++.|.
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~--~~~~------~~~~~~p~~i~~~~~g~l~v~~----~-~~~i~ 90 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGT--TVLP------FNGLYQPQGLAVDGAGTVYVTD----F-NNRVV 90 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC-------EECC------CCSCCSCCCEEECTTCCEEEEE----T-TTEEE
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecCCCccc--ceEe------eCCcCCcceeEECCCCCEEEEc----C-CCEEE
Confidence 6789999996 77777 547788999999765432 1110 1233457889999999976665 5 88999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
+||..... ...+.. .....+.++++++ ++.++++...++.|.+|+..+... ..........+.+++++
T Consensus 91 ~~d~~~~~----~~~~~~--~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~p~~i~~~ 158 (270)
T 1rwi_B 91 TLAAGSNN----QTVLPF--DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-----TVLPFTGLNDPDGVAVD 158 (270)
T ss_dssp EECTTCSC----CEECCC--CSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSC-----EECCCCSCCSCCCEEEC
T ss_pred EEeCCCce----Eeeeec--CCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCcee-----EeeccccCCCceeEEEe
Confidence 99987542 122221 1124588999999 888888877788999997665432 11112233467899999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc
Q 009203 384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE 462 (540)
Q Consensus 384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 462 (540)
++|+++++...++.|.+||............ ......+++++++ .++++...++.|.+||.........
T Consensus 159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g---~l~v~~~~~~~v~~~~~~~~~~~~~------- 228 (270)
T 1rwi_B 159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG---TVYVTEHNTNQVVKLLAGSTTSTVL------- 228 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC---CEEEEETTTSCEEEECTTCSCCEEC-------
T ss_pred CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC---CEEEEECCCCcEEEEcCCCCcceee-------
Confidence 9999777777788999999987655433222 2567788999876 5777777788999999876443221
Q ss_pred cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
...+...+.+++++++|+++++...++.|++|++..
T Consensus 229 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 112335689999999999888888999999999885
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=9.5e-15 Score=154.11 Aligned_cols=253 Identities=9% Similarity=-0.037 Sum_probs=163.6
Q ss_pred EeccchhcccccCceEEEEEecCCCcEEE-----EEeCCceEEEEEcCCCCCc-ceeecccccCCCCCCCCceeEEEecC
Q 009203 212 CHTSNHVSSLHKRKLRSLSLNPVNEQLFV-----TSALDGVIRLWQLQSRGSG-ASLLSTTDCLSPKHRRWPEDIAWHPQ 285 (540)
Q Consensus 212 ~~~~~~~~~~h~~~V~~l~~spd~~~~l~-----tg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~ 285 (540)
+.+....-.+|...+.+++|||| |++|| .|+.+..|++||+.+++.. ... . .. .....++|+||
T Consensus 109 l~d~~~~a~~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~---~----~~--~~~~~~~wspD 178 (695)
T 2bkl_A 109 LLDPNGWSKDGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV---I----EG--GKYATPKWTPD 178 (695)
T ss_dssp EECGGGSSSSSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC---B----SC--CTTCCCEECTT
T ss_pred EEchHHhccCCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCCCcCCcc---c----Cc--ccccceEEecC
Confidence 34444445678778999999997 78777 3444568999999988743 111 0 11 11267999999
Q ss_pred CCeEEEEeecCCCCCe-------------EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC---
Q 009203 286 GNSLFSAHTADSGDSQ-------------ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH--- 349 (540)
Q Consensus 286 ~~~l~s~~~~~~~d~~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--- 349 (540)
|+.|+.+ +.+.. |++|++.++.... ...+.. ..+...+.++.|+| +|++|+.++.++
T Consensus 179 g~~l~~~----~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv~~~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~ 251 (695)
T 2bkl_A 179 SKGFYYE----WLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-TVVHER-TGDPTTFLQSDLSR-DGKYLFVYILRGWSE 251 (695)
T ss_dssp SSEEEEE----ECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-EEEECC-CCCTTCEEEEEECT-TSCCEEEEEEETTTE
T ss_pred CCEEEEE----EecCCCCCccccCCCCCEEEEEECCCCchhc-eEEEec-CCCCEEEEEEEECC-CCCEEEEEEeCCCCc
Confidence 9999988 55554 9999998774221 222222 12345688999999 999888877666
Q ss_pred -cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC----CCeEEEEECCCCCe---eeeec--cCccEE
Q 009203 350 -AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA----DKRIIGFDAGVGRA---DFKHQ--IESKCM 419 (540)
Q Consensus 350 -~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~~---~~~~~--~~~~~~ 419 (540)
.|++|+..++. ...+.. +...+....| ++|. ++..+. ++.|.+||+.++.. ..... ....+.
T Consensus 252 ~~l~~~~~~~~~----~~~l~~--~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 252 NDVYWKRPGEKD----FRLLVK--GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL 323 (695)
T ss_dssp EEEEEECTTCSS----CEEEEE--CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred eEEEEEcCCCCc----eEEeec--CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence 67777665554 233332 4455566666 5666 544443 57899999987653 22222 234456
Q ss_pred EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCCEEEEE----eCCCcEEEE
Q 009203 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGLYITSG----SADPVIHLF 494 (540)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg----~~dg~i~iw 494 (540)
.+.++ .+ .++++...|+..+||.+......... +..+ .+.+..++++|+++.|+.. ...+.|++|
T Consensus 324 ~~~~~-~~---~lv~~~~~dg~~~l~~~~~~g~~~~~------l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~ 393 (695)
T 2bkl_A 324 SVSIV-GG---HLSLEYLKDATSEVRVATLKGKPVRT------VQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKT 393 (695)
T ss_dssp EEEEE-TT---EEEEEEEETTEEEEEEEETTCCEEEE------CCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEE-CC---EEEEEEEECCEEEEEEEeCCCCeeEE------ecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEE
Confidence 67776 33 68888889998888766521111211 1222 4567788899999877733 235789999
Q ss_pred eccCC
Q 009203 495 DIRYS 499 (540)
Q Consensus 495 d~~~~ 499 (540)
|+.++
T Consensus 394 d~~~g 398 (695)
T 2bkl_A 394 SVSTG 398 (695)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 99863
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=1.6e-12 Score=121.87 Aligned_cols=277 Identities=7% Similarity=-0.043 Sum_probs=190.4
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
....+.++++.++ +.++++...++.|.+||.. ++. ..+.. ..+...+.++++.++|.+.++. ..++.
T Consensus 18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~-~~~~~------~~~~~~~~~i~~~~~g~l~v~~----~~~~~ 84 (300)
T 2qc5_A 18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRI-KEFEV------PTPDAKVMCLIVSSLGDIWFTE----NGANK 84 (300)
T ss_dssp TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCE-EEEEC------SSTTCCEEEEEECTTSCEEEEE----TTTTE
T ss_pred CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-Cce-EEEEC------CCCCCcceeEEECCCCCEEEEe----cCCCe
Confidence 3467899999996 8888877778999999987 432 22211 1234568899999999988876 67889
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
|..||.. +. ........ ....+.++++.+ ++.++++...++.|..||.. ++. ..+........+.+++
T Consensus 85 v~~~d~~-g~--~~~~~~~~---~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~----~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 85 IGKLSKK-GG--FTEYPLPQ---PDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTI----YEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EEEECTT-SC--EEEEECSS---TTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCE----EEEECSSTTCCEEEEE
T ss_pred EEEECCC-CC--eEEecCCC---CCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCE----EEccCCCCCCCceeEE
Confidence 9999987 42 11111111 224589999998 88888877768899999987 542 2222222446789999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
+.++|+++++...++.|..||. +++..... ........+.+++++ .++++....+.|.+||. ++.....
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~i~~~~~-~g~~~~~---- 223 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG---ALWFVEIMGNKIGRITT-TGEISEY---- 223 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS---SEEEEETTTTEEEEECT-TCCEEEE----
T ss_pred ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC---CEEEEccCCCEEEEEcC-CCcEEEE----
Confidence 9999997777666889999998 55543321 123457788888876 46666666788999998 3332221
Q ss_pred ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc-ccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS-QSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
....+...+.+++++++|++.++...++.|..|+.. +... ..+......+.+++++++|.++++.. + .|..+
T Consensus 224 --~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 224 --DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND---NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp --ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT---SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred --ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC---CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 112334568999999999977777677899999984 3222 12233345689999999998776654 4 56555
Q ss_pred e
Q 009203 539 K 539 (540)
Q Consensus 539 ~ 539 (540)
+
T Consensus 297 ~ 297 (300)
T 2qc5_A 297 N 297 (300)
T ss_dssp E
T ss_pred C
Confidence 4
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=1.3e-13 Score=127.29 Aligned_cols=244 Identities=8% Similarity=-0.040 Sum_probs=171.8
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC-CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR-RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
+++|++++.|+.|.+||..+++.+.++.. +. ..+.+++++|+|++|++ . ++.|..||. ++ +
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------~~~~~~~~~~~~pdG~ilvs-----~-~~~V~~~d~-~G---~ 66 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL--------EKGWECNSVAATKAGEILFS-----Y-SKGAKMITR-DG---R 66 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEEC--------CTTCCCCEEEECTTSCEEEE-----C-BSEEEEECT-TS---C
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCC--------CccCCCcCeEECCCCCEEEe-----C-CCCEEEECC-CC---C
Confidence 68999999999999999999988777742 22 45789999999998884 3 677999998 56 3
Q ss_pred eEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeec-ccCCcceeEEEeccCCCEEEEE
Q 009203 315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSA 392 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~ 392 (540)
.+..+.. .....+.++.+.+ +++++++.+. ++.|..+|. +++.++....-.. ..+......+++.++|+++++.
T Consensus 67 ~~W~~~~--~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 67 ELWNIAA--PAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp EEEEEEC--CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred EEEEEcC--CCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence 3444443 1124588899999 9999999887 777888886 5554333321110 1122345667889999999999
Q ss_pred eCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc-cccCeE
Q 009203 393 GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE-SQSALI 471 (540)
Q Consensus 393 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~v~ 471 (540)
..++.|..||.. |+.+..+.......+....+++ .+++++..++.|..+|..+++.....-.. ...+ .-..+.
T Consensus 143 ~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g---~~~v~~~~~~~v~~~d~~tG~~~w~~~~~--~~~~~~l~~~~ 216 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNG---DCLVACGDAHCFVQLNLESNRIVRRVNAN--DIEGVQLFFVA 216 (276)
T ss_dssp TTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTS---CEEEECBTTSEEEEECTTTCCEEEEEEGG--GSBSCCCSEEE
T ss_pred cCCCEEEEECCC-CCEEEEEECCCCccceeEcCCC---CEEEEeCCCCeEEEEeCcCCcEEEEecCC--CCCCccccccc
Confidence 999999999998 9988887766566666677766 68888888889999999988754433210 1111 223478
Q ss_pred EEEEcCCCCEEEEEeCC--------CcEEEEeccCCCCccccccc
Q 009203 472 NQSWSPDGLYITSGSAD--------PVIHLFDIRYSANKPSQSIR 508 (540)
Q Consensus 472 ~~~~sp~g~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~ 508 (540)
.+...++|+++++.... +..+++.++. +++.+-.+.
T Consensus 217 ~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~~W~~~ 260 (276)
T 3no2_A 217 QLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKVVWQLN 260 (276)
T ss_dssp EEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBEEEEEC
T ss_pred cceEcCCCCEEEEeccCccccccccCCceEEEECC-CCCEEEEec
Confidence 89999999988887421 2345666643 255554444
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=1.8e-13 Score=130.22 Aligned_cols=275 Identities=8% Similarity=0.013 Sum_probs=182.3
Q ss_pred CCCCeEEEeccc------hhcc-----cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203 205 ASPATIHCHTSN------HVSS-----LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH 273 (540)
Q Consensus 205 ~~d~~i~~~~~~------~~~~-----~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h 273 (540)
..+.+|.+++.. .++. ........+++. +++++++...++.|.+||..+++.+.++..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~--------- 82 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITG--------- 82 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEEC---------
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCC---------
Confidence 346777777654 1111 112446788885 367777777789999999999887666621
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC--CcccceeEEEEeCCCCCEEEEEe-cCCc
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP--HVKGIINSIIFLPWENPCFATGG-SDHA 350 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~-~dg~ 350 (540)
......+++++++...++. ..++.|.+||..++ .....+.... ........+++ . ++.++++.. .++.
T Consensus 83 ~~~p~~i~~~~~g~lyv~~----~~~~~v~~iD~~t~---~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~ 153 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQ----IWDYRIFIINPKTY---EITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNR 153 (328)
T ss_dssp CSSEEEEEEEETTEEEEEE----BSCSEEEEEETTTT---EEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCE
T ss_pred CCCCcEEEEeCCCeEEEEE----CCCCeEEEEECCCC---eEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCE
Confidence 2447789999998544443 47899999999976 3343333211 01114567777 3 555555554 4889
Q ss_pred EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC----------CeEEEEECCCCCeeeeecc--CccE
Q 009203 351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD----------KRIIGFDAGVGRADFKHQI--ESKC 418 (540)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~--~~~~ 418 (540)
|.+||+.+++.. ..+. .......++++|+|++++++..+ +.|.+||..+++....... ....
T Consensus 154 v~viD~~t~~~~---~~i~---~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p 227 (328)
T 3dsm_A 154 ILKIDTETDKVV---DELT---IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP 227 (328)
T ss_dssp EEEEETTTTEEE---EEEE---CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred EEEEECCCCeEE---EEEE---cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence 999999988742 2222 22346789999999977776654 7899999998887655443 3467
Q ss_pred EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CCCEEEEE----eCCCcEEE
Q 009203 419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DGLYITSG----SADPVIHL 493 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg----~~dg~i~i 493 (540)
..++++|++ ..++++.. .|.+||..+++..... ........+.+++++| ++.++++. ..++.|.+
T Consensus 228 ~~la~~~d~---~~lyv~~~--~v~~~d~~t~~~~~~~-----~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v 297 (328)
T 3dsm_A 228 SEVQLNGTR---DTLYWINN--DIWRMPVEADRVPVRP-----FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297 (328)
T ss_dssp EEEEECTTS---CEEEEESS--SEEEEETTCSSCCSSC-----SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred eeEEEecCC---CEEEEEcc--EEEEEECCCCceeeee-----eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence 899999976 45555543 8999999877642111 1111245689999999 55666665 57899999
Q ss_pred EeccCCCCcccccccccccceeEEEE
Q 009203 494 FDIRYSANKPSQSIRAHQKRVFKAVW 519 (540)
Q Consensus 494 wd~~~~~~~~~~~~~~h~~~i~~l~~ 519 (540)
||.. ++.+.++... .....++|
T Consensus 298 ~d~~---g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 298 YSPQ---GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp ECTT---CCEEEEEEEE-ESEEEEEE
T ss_pred ECCC---CCEEEEEEec-cCcceEEE
Confidence 9987 5666666532 23455655
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=8.3e-14 Score=147.96 Aligned_cols=285 Identities=9% Similarity=-0.056 Sum_probs=169.9
Q ss_pred ecCCCcEEEEEeCCc---eEEEEEcCC----CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC-CCeEE
Q 009203 232 NPVNEQLFVTSALDG---VIRLWQLQS----RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG-DSQIS 303 (540)
Q Consensus 232 spd~~~~l~tg~~dg---~v~iw~~~~----~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~-d~~i~ 303 (540)
+|| |.+++....++ .-.||.... +.....+... .....+|...+..++|||||++|+.+...++. ...|+
T Consensus 115 ~pd-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~-~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 115 QRR-GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDP-NTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EEE-TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECG-GGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred EEE-CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECH-HHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 376 56555554333 366676543 2222222211 11123454568899999999999887433222 25799
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc--------------EEEEecCCCCCccccceee
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA--------------VVLWSERDAEDSWKPKALH 369 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~--------------i~iwd~~~~~~~~~~~~~~ 369 (540)
+||+.++.. +.... +...+..++|+| + +.|+.++.++. |++|++.++.... .....
T Consensus 193 v~dl~tg~~---~~~~~----~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~ 262 (741)
T 1yr2_A 193 FVGVADGKP---LADEL----KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD-QPVFA 262 (741)
T ss_dssp EEETTTCCE---EEEEE----EEEESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC-EEEEC
T ss_pred EEECCCCCC---CCccC----CCceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-EEEec
Confidence 999998732 22211 112246789999 7 88888776654 8999998765210 11222
Q ss_pred cccCCcceeEEEeccCCCEEEEEeCCC-----eEEEEECCCC--C-eeeeeccCccEEEEeecCCCCCceEEEEEcC---
Q 009203 370 RNLHSSAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVG--R-ADFKHQIESKCMSVLPNPCDFNLFMVQTGTP--- 438 (540)
Q Consensus 370 ~~~~~~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 438 (540)
...+...+.++.|+|||++|+..+.++ .|++||+.++ . ............... .|++ ..|+..+.
T Consensus 263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg---~~l~~~s~~~~ 338 (741)
T 1yr2_A 263 TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG---DQLWFVSGDGA 338 (741)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET---TEEEEEECTTC
T ss_pred cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC---CEEEEEECCCC
Confidence 222334688999999999988877544 8999999876 4 322222222223332 2544 34444443
Q ss_pred -CCeEEEEECCCCc-ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-ccccee
Q 009203 439 -GRQLRLYDIRLRQ-TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVF 515 (540)
Q Consensus 439 -dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~ 515 (540)
++.|.+||+.+.. .... .+..+...+..++|+ ++.++++...|+..+||.++.. +.....+.. +.+.|.
T Consensus 339 ~~~~l~~~d~~~~~~~~~~------l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~ 410 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPRFDT------VVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSAS 410 (741)
T ss_dssp TTCEEEEEECSSSSCEEEE------EECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT-SCEEEECBCSSSCEEE
T ss_pred CCCEEEEEeCCCCccccEE------EecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-CCceeeccCCCCeEEE
Confidence 4569999998742 1111 112334456778887 6677888888998888766532 444455544 356789
Q ss_pred EEEEcCCCCEEEE-EE---cCCcEEEEeC
Q 009203 516 KAVWHYSHPLLIS-IS---SDLNIGLHKI 540 (540)
Q Consensus 516 ~l~~s~~~~~l~s-~~---~dg~v~iw~l 540 (540)
.+.++|+++.|+. .+ ..++|++||+
T Consensus 411 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 411 GLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 9999999875552 22 3478888874
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=1.9e-12 Score=131.31 Aligned_cols=280 Identities=13% Similarity=0.011 Sum_probs=185.0
Q ss_pred CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC--CCCC
Q 009203 235 NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN--KTKG 312 (540)
Q Consensus 235 ~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~--~~~~ 312 (540)
++.++++...+++|.++|..+++.+.++... ..+..+.|+|||++++++ +.++.|.+||+. +.
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---------~~p~~v~~SpDGr~lyv~----~~dg~V~viD~~~~t~-- 230 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---------YAVHISRLSASGRYLFVI----GRDGKVNMIDLWMKEP-- 230 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS---------SCEEEEEECTTSCEEEEE----ETTSEEEEEETTSSSC--
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCC---------CCccceEECCCCCEEEEE----cCCCeEEEEECCCCCC--
Confidence 3567778888999999999998877666321 235689999999999998 889999999996 44
Q ss_pred ceeEEeecCCCCcccceeEEEEe----CCCCCEEEEEe-cCCcEEEEecCCCCCccccceeec--c---cCC-cceeEEE
Q 009203 313 RACVTFLDDKPHVKGIINSIIFL----PWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHR--N---LHS-SAVMGVA 381 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~--~---~~~-~~v~~l~ 381 (540)
..+..+.. ......++|+ | ++++++++. .+++|.++|..+.+.+..+..... . .|. ..+..+.
T Consensus 231 -~~v~~i~~----G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 231 -TTVAEIKI----GSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp -CEEEEEEC----CSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred -cEeEEEec----CCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 33444432 2346799999 7 888776655 559999999988775322221110 0 022 2677888
Q ss_pred eccCCCE-EEEEeCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203 382 GMQQKQI-VLSAGADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458 (540)
Q Consensus 382 ~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 458 (540)
+++++.. ++....+|.|.++|......+. ..........+.|+|++. .++++...++.|.++|+.+++.... +.
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr--~~~va~~~sn~V~ViD~~t~kl~~~-i~ 381 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR--YFITAANARNKLVVIDTKEGKLVAI-ED 381 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC--EEEEEEGGGTEEEEEETTTTEEEEE-EE
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC--EEEEEeCCCCeEEEEECCCCcEEEE-Ee
Confidence 8887654 4455667999999998754322 233445666788999872 2445556788999999998864332 21
Q ss_pred cccccCccccCeEEEEEcCCCCEE-EEEe-CCCcEEEEeccCCC-----CcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203 459 WKQESSESQSALINQSWSPDGLYI-TSGS-ADPVIHLFDIRYSA-----NKPSQSIRAHQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l-~sg~-~dg~i~iwd~~~~~-----~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
. .....|.+.-..+ ++|++..+ +++. .++.|.++|..... .+.+.++......-..+..+|++++|.....
T Consensus 382 v-gg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 382 T-GGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp C-SSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred c-cCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecC
Confidence 1 0112343222222 68875544 4443 46899999998632 2445555544333355778999998887652
Q ss_pred -------CCcEEEEeC
Q 009203 532 -------DLNIGLHKI 540 (540)
Q Consensus 532 -------dg~v~iw~l 540 (540)
..+|.|+|+
T Consensus 460 ~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 460 LNPEAEISGSVAVFDI 475 (567)
T ss_dssp TCSSHHHHTCEEEEEG
T ss_pred CCCCcccCceEEEEEC
Confidence 358888874
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=1.1e-12 Score=124.16 Aligned_cols=245 Identities=11% Similarity=0.092 Sum_probs=161.6
Q ss_pred CCceeEEEecCCCeEEE-------EeecCCCCCeEEEEecCCCCCceeEEeec-CCCCcccceeEEEEeCCC-CCEEEEE
Q 009203 275 RWPEDIAWHPQGNSLFS-------AHTADSGDSQISVLNLNKTKGRACVTFLD-DKPHVKGIINSIIFLPWE-NPCFATG 345 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s-------~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~-~~~l~s~ 345 (540)
....+++|+++|.++++ . ..++.|.+||..+++. ..... ....+...+.++++++ + +.++++.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~----~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~ 89 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNG----KPAGEILRIDLKTGKK---TVICKPEVNGYGGIPAGCQCDR-DANQLFVAD 89 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETT----EECCEEEEECTTTCCE---EEEECCEETTEECCEEEEEECS-SSSEEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCC----CCCCEEEEEeCCCCcE---EEEEecccCCCCCCCceEEEec-CCCcEEEEE
Confidence 34678999999988877 4 5678999999876632 22111 0001235689999999 7 6655554
Q ss_pred ecCCcEEEEecCCCCCcccccee-ec---ccCCcceeEEEeccCCCEEEEEeCC---------------CeEEEEECCCC
Q 009203 346 GSDHAVVLWSERDAEDSWKPKAL-HR---NLHSSAVMGVAGMQQKQIVLSAGAD---------------KRIIGFDAGVG 406 (540)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~~~~~-~~---~~~~~~v~~l~~s~~~~~l~~~~~d---------------g~i~iwd~~~~ 406 (540)
. .+.|.+||.. ++. ..+ .. ......+.+++++++|+++++...+ +.|..||.. +
T Consensus 90 ~-~~~l~~~d~~-g~~----~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 90 M-RLGLLVVQTD-GTF----EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp T-TTEEEEEETT-SCE----EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred C-CCCEEEEeCC-CCE----EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 4 4579999988 553 211 11 1123458899999999888877655 578888876 5
Q ss_pred CeeeeeccCccEEEEeec----CCCCCceEEEEEcCCCeEEEEECC-CCcceeeeeccccccCccc-cCeEEEEEcCCCC
Q 009203 407 RADFKHQIESKCMSVLPN----PCDFNLFMVQTGTPGRQLRLYDIR-LRQTEIHAFGWKQESSESQ-SALINQSWSPDGL 480 (540)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~ 480 (540)
+.............++++ |++. .++++...++.|.+||+. ++...... ....+..+. ..+..++++++|+
T Consensus 163 ~~~~~~~~~~~~~~i~~~~~~d~dg~--~l~v~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 163 QMIQVDTAFQFPNGIAVRHMNDGRPY--QLIVAETPTKKLWSYDIKGPAKIENKK--VWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp CEEEEEEEESSEEEEEEEECTTSCEE--EEEEEETTTTEEEEEEEEETTEEEEEE--EEEECCCCSSCEEEEEEEBTTCC
T ss_pred CEEEeccCCCCcceEEEecccCCCCC--EEEEEECCCCeEEEEECCCCCccccce--EEEECCCCCCCCCCceEECCCCC
Confidence 543332323345667777 7651 234555678999999986 33211000 011223333 5678899999999
Q ss_pred EEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE-EEEEcCCcEEEEeC
Q 009203 481 YITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL-ISISSDLNIGLHKI 540 (540)
Q Consensus 481 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l-~s~~~dg~v~iw~l 540 (540)
++++...++.|.+||..+ ++.+..+..+...+.+++|+++|+.| ++...++.|..|++
T Consensus 239 l~v~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDG--GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEEETTTEEEEECTTC--BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEEcCCCEEEEEcCCC--CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 888887889999999885 45555566666789999999999944 55556678888874
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=9.9e-12 Score=116.42 Aligned_cols=236 Identities=12% Similarity=0.019 Sum_probs=167.6
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
...+.++++.++|.++++. ..++.|.+||.. +. +..+... .....+.++++.+ ++.++++...++.|..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~----~~~~~v~~~d~~-~~----~~~~~~~-~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQ----HKANMISCINLD-GK----ITEYPLP-TPDAKVMCLTISS-DGEVWFTENAANKIGR 82 (299)
T ss_dssp SCCEEEEEECTTSCEEEEE----TTTTEEEEECTT-CC----EEEEECS-STTCCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred CCCccceEECCCCCEEEEe----cCCCcEEEEcCC-CC----eEEecCC-cccCceeeEEECC-CCCEEEeCCCCCeEEE
Confidence 3568899999999988876 668999999988 42 1221111 1235689999999 8888887777888999
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCce
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 431 (540)
||.. +. ...+........+.++++.++|.++++...++.|.+||. ++...... ........+.+++++ .
T Consensus 83 ~~~~-g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g---~ 153 (299)
T 2z2n_A 83 ITKK-GI----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN---A 153 (299)
T ss_dssp ECTT-SC----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS---C
T ss_pred ECCC-Cc----EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC---C
Confidence 9986 33 222222224557899999999988888777889999999 55543221 123567788888876 5
Q ss_pred EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-ccccc
Q 009203 432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-SIRAH 510 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~h 510 (540)
++++...++.|..||. ++..... ........+.+++++++|.++++...++.|.+||. + +.... ....+
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~~~------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~--g~~~~~~~~~~ 223 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDITEF------KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S--GEITEFKIPTP 223 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEE------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T--CCEEEEECSST
T ss_pred EEEEeCCCCEEEEEcC-CCcEEEe------eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-C--CcEEEEECCCC
Confidence 6666777789999998 5443221 11223456889999999998777777889999998 4 33221 22334
Q ss_pred ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 511 QKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
...+.+++++++|.++++...++.|.+||
T Consensus 224 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 224 NARPHAITAGAGIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp TCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred CCCceeEEECCCCCEEEeccCCceEEEEC
Confidence 56789999999999777766778888887
No 198
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=1.5e-13 Score=132.13 Aligned_cols=220 Identities=11% Similarity=0.055 Sum_probs=145.9
Q ss_pred CceeEEEecCCCeEEEEeec-----CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--
Q 009203 276 WPEDIAWHPQGNSLFSAHTA-----DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-- 348 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-- 348 (540)
.+..++| ||+.|+..... +..++.|.+||+.++.. . .+ ..+..++|+| +|+.|+.++.+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~---~-~l-------~~~~~~~~Sp-Dg~~la~~~~~~~ 81 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR---R-FI-------ENATMPRISP-DGKKIAFMRANEE 81 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE---E-EE-------ESCEEEEECT-TSSEEEEEEEETT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce---E-Ec-------ccCCCeEECC-CCCEEEEEEeccC
Confidence 3567778 88888765211 12367899999987632 2 22 2378899999 99998887654
Q ss_pred -C--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC---------------------------CeE
Q 009203 349 -H--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD---------------------------KRI 398 (540)
Q Consensus 349 -g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---------------------------g~i 398 (540)
+ .|++||+.+++. ..+.. +.. +..++|+|||+.|+.++.+ ..|
T Consensus 82 ~~~~~l~~~~~~~g~~----~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 82 KKVSEIWVADLETLSS----KKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp TTEEEEEEEETTTTEE----EEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred CCcceEEEEECCCCce----EEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 2 388888887763 22322 223 8999999999998887642 579
Q ss_pred EEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC------C-eEEEEECCCCcceeeeeccccccCccccCeE
Q 009203 399 IGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG------R-QLRLYDIRLRQTEIHAFGWKQESSESQSALI 471 (540)
Q Consensus 399 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (540)
++||+.+++.+...... .+..+.|+|++ +++++..+ . ...||.+.+++. ... ..+ ..+.
T Consensus 155 ~~~d~~~~~~~~~l~~~-~~~~~~~spdg----~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l-------~~~-~~~~ 220 (347)
T 2gop_A 155 WIFDTESEEVIEEFEKP-RFSSGIWHRDK----IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKM-------FEK-VSFY 220 (347)
T ss_dssp EEEETTTTEEEEEEEEE-TTCEEEEETTE----EEEEEECCCSSCCSSCCEEEEEEETTEE-EEE-------EEE-ESEE
T ss_pred EEEECCCCeEEeeecCC-CcccccCCCCe----EEEEEecccccccccccccEEEeCCCce-EEe-------ccC-ccee
Confidence 99999988762222223 66788899876 45555433 2 334444433332 111 122 3444
Q ss_pred EEEEcCCCCEEEEEeCC--------CcEEEEeccCCCCcccccccccccceeE-EEEcCCCCEEEEEEcCCcEEEE
Q 009203 472 NQSWSPDGLYITSGSAD--------PVIHLFDIRYSANKPSQSIRAHQKRVFK-AVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 472 ~~~~sp~g~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~dg~v~iw 538 (540)
.+ +|||++|+.++.+ ..|++|| + +........|...+.. +.|+ |+ ++++++.++.++||
T Consensus 221 ~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~--~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 221 AV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G--KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp EE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S--SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred eE--CCCCCEEEEEEccccCCccccceEEEEC--C--CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence 44 9999998877654 3678888 3 4444445566777886 9999 88 99999999999998
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=2.3e-11 Score=117.29 Aligned_cols=277 Identities=9% Similarity=-0.112 Sum_probs=168.7
Q ss_pred ecCCCcEEEEEeC--Cc---eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec------CCCCC
Q 009203 232 NPVNEQLFVTSAL--DG---VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA------DSGDS 300 (540)
Q Consensus 232 spd~~~~l~tg~~--dg---~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~------~~~d~ 300 (540)
.|+ ++++.+... .. +|.+||..+++.+.++.. + ..+ .++|+|||++|+++... |..++
T Consensus 29 ~~~-~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-------g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 29 GAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-------G-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCC-CCEEEEeCCcccCCccEEEEEECCCCeEEEEecC-------C-CCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 354 455554432 22 889999998876544421 1 122 79999999999987210 01367
Q ss_pred eEEEEecCCCCCceeEEeecCC----CCcccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccce-eecccC
Q 009203 301 QISVLNLNKTKGRACVTFLDDK----PHVKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKA-LHRNLH 373 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~-~~~~~~ 373 (540)
.|.+||..+.+. +..+... .........++|+| ++++|+++.. ++.|.++| .+++.. .. +. .
T Consensus 98 ~v~viD~~t~~~---~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~---~~~i~---~ 166 (373)
T 2mad_H 98 YVEVFDPVTFLP---IADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSD---DQLLS---S 166 (373)
T ss_pred eEEEEECCCCcE---EEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEE---eEEcC---C
Confidence 899999987632 3332211 00012356899999 9999988764 47899999 887642 12 11 1
Q ss_pred CcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeec-----cCc-c-EEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203 374 SSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQ-----IES-K-CMSVLPNPCDFNLFMVQTGTPGRQLRLY 445 (540)
Q Consensus 374 ~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~-~~~~~~~~~~~~~~~l~~~~~dg~v~i~ 445 (540)
.. ++.+.|++ ..+++.+.||.+.++|. +++...... ... . .....+.+++. .++++. ..+.+.+.
T Consensus 167 ~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~-~~~~v~vi 239 (373)
T 2mad_H 167 PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPV-YSGKILQA 239 (373)
T ss_pred Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC--EEEEEc-CCceEEEE
Confidence 11 24444554 45666778999999999 777652211 111 1 11223334331 233333 57899999
Q ss_pred ECCCCccee-eeecccc----ccCccccCeEEEEEcCCCCEEEEEeC----------CCcEEEEeccCCCCccccccccc
Q 009203 446 DIRLRQTEI-HAFGWKQ----ESSESQSALINQSWSPDGLYITSGSA----------DPVIHLFDIRYSANKPSQSIRAH 510 (540)
Q Consensus 446 d~~~~~~~~-~~~~~~~----~~~~~~~~v~~~~~sp~g~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~h 510 (540)
|+....... ..+.... ...-.......+.++|+++.|+++.. ++.|.++|+.+ .+.+.++..
T Consensus 240 d~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--~~vv~~i~~- 316 (373)
T 2mad_H 240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--GQTSSQISL- 316 (373)
T ss_pred eccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC--CEEEEEEEC-
Confidence 997553211 1111000 00001123445789999988877643 35799999987 677777753
Q ss_pred ccceeEEEEcCCCC-EEEEEE-cCCcEEEEeC
Q 009203 511 QKRVFKAVWHYSHP-LLISIS-SDLNIGLHKI 540 (540)
Q Consensus 511 ~~~i~~l~~s~~~~-~l~s~~-~dg~v~iw~l 540 (540)
.....+++|+|||+ +++++. .++.|.+||+
T Consensus 317 g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 33589999999999 777777 5899999985
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=2.5e-12 Score=118.70 Aligned_cols=214 Identities=11% Similarity=0.056 Sum_probs=154.3
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK 364 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 364 (540)
.+++|+++ +.++.|.+||..++ +.+-.+.... ...+.++.+.| ++++++ +.++.|..||. +++.+|+
T Consensus 4 ~~~~lv~~----~~~~~v~~~d~~tG---~~~w~~~~~~--~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 4 PQHLLVGG----SGWNKIAIINKDTK---EIVWEYPLEK--GWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWN 70 (276)
T ss_dssp CCEEEEEC----TTCSEEEEEETTTT---EEEEEEECCT--TCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred CCcEEEee----CCCCEEEEEECCCC---eEEEEeCCCc--cCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEE
Confidence 35688888 99999999999887 4444444311 13588999999 999888 34678999999 7776554
Q ss_pred cceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCeeeeeccCc-------cEEEEeecCCCCCceEEEEE
Q 009203 365 PKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFKHQIES-------KCMSVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~ 436 (540)
... .....+.++.+.++|+++++.+. ++.|..+|. +|+.+....... ....+.+.+++ .++++.
T Consensus 71 ~~~----~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G---~~lv~~ 142 (276)
T 3no2_A 71 IAA----PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG---NYLVPL 142 (276)
T ss_dssp EEC----CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS---CEEEEE
T ss_pred EcC----CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC---CEEEEe
Confidence 432 12346888999999999999887 888888886 577655443211 12233445555 689999
Q ss_pred cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccc-----
Q 009203 437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ----- 511 (540)
Q Consensus 437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~----- 511 (540)
..++.|..||.. ++... .+.. ...+.++.+.++|+++++++.++.|..||..+ ++.+..+..+.
T Consensus 143 ~~~~~v~~~d~~-G~~~w-~~~~-------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t--G~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLN-SVKL-------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES--NRIVRRVNANDIEGVQ 211 (276)
T ss_dssp TTTTEEEEECTT-SCEEE-EEEC-------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT--CCEEEEEEGGGSBSCC
T ss_pred cCCCEEEEECCC-CCEEE-EEEC-------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC--CcEEEEecCCCCCCcc
Confidence 999999999998 65433 2211 13456788899999999998888999999987 66666654332
Q ss_pred -cceeEEEEcCCCCEEEEEE
Q 009203 512 -KRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 512 -~~i~~l~~s~~~~~l~s~~ 530 (540)
..+..++..++|.++++..
T Consensus 212 l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEE
T ss_pred ccccccceEcCCCCEEEEec
Confidence 2378888899999888773
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=2.4e-12 Score=136.67 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=158.8
Q ss_pred EEEeccchhcccccCceEEEEEecCCCcEEEEEeCC-----ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec
Q 009203 210 IHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALD-----GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP 284 (540)
Q Consensus 210 i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~ 284 (540)
-.+.+...+-.+|...+..++|||| |++||.++.+ ..|++||+.+++....... ...+..++|+|
T Consensus 149 ~~lld~~~l~~~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~---------~~~~~~~~wsp 218 (741)
T 1yr2_A 149 RVLLDPNTWAKDGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK---------WVKFSGLAWLG 218 (741)
T ss_dssp EEEECGGGCC----EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE---------EEESCCCEEST
T ss_pred EEEECHHHhccCCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC---------CceeccEEEEC
Confidence 3444555445666667899999997 7888776543 4699999998875332111 11135799999
Q ss_pred CCCeEEEEeecCCC----------CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-----
Q 009203 285 QGNSLFSAHTADSG----------DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH----- 349 (540)
Q Consensus 285 ~~~~l~s~~~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg----- 349 (540)
| +.|+.+...+.. ...|++|++.++.... ...+.. ..+...+..+.|+| +|++|+..+.++
T Consensus 219 D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~ 294 (741)
T 1yr2_A 219 N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD-QPVFAT-PELPKRGHGASVSS-DGRWVVITSSEGTDPVN 294 (741)
T ss_dssp T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC-EEEECC-TTCTTCEEEEEECT-TSCEEEEEEECTTCSCC
T ss_pred C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-EEEecc-CCCCeEEEEEEECC-CCCEEEEEEEccCCCcc
Confidence 9 988887211110 2348999998763211 222332 12233588999999 999888877544
Q ss_pred cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC----CCeEEEEECCCCC--eeeeec-cCccEEEEe
Q 009203 350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA----DKRIIGFDAGVGR--ADFKHQ-IESKCMSVL 422 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~--~~~~~~-~~~~~~~~~ 422 (540)
.|++||+.++... ....+. .+...+.... +|+|+.|+..+. ++.|.+||+.++. ...... ....+..+.
T Consensus 295 ~l~~~d~~~~~~~-~~~~l~--~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~ 370 (741)
T 1yr2_A 295 TVHVARVTNGKIG-PVTALI--PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG 370 (741)
T ss_dssp EEEEEEEETTEEC-CCEEEE--CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred eEEEEECCCCCCc-ccEEec--CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence 7999999876210 012222 2333444443 488998888776 3459999998752 222222 223344566
Q ss_pred ecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE----eCCCcEEEEeccC
Q 009203 423 PNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG----SADPVIHLFDIRY 498 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg----~~dg~i~iwd~~~ 498 (540)
+. .+ .++++...++..+||.+.........+ . ..+...+..++++|+++.|+.. ...+.|++||+.+
T Consensus 371 ~~-~~---~lv~~~~~dg~~~l~~~~~~g~~~~~l----~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 371 IA-GN---RLFASYIHDAKSQVLAFDLDGKPAGAV----S-LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EE-BT---EEEEEEEETTEEEEEEEETTSCEEEEC----B-CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EE-CC---EEEEEEEECCEEEEEEEeCCCCceeec----c-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 65 22 578888888887777554211122211 1 1134568889999999866633 2357899999986
Q ss_pred C
Q 009203 499 S 499 (540)
Q Consensus 499 ~ 499 (540)
+
T Consensus 442 g 442 (741)
T 1yr2_A 442 A 442 (741)
T ss_dssp T
T ss_pred C
Confidence 3
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=8.6e-12 Score=122.11 Aligned_cols=243 Identities=9% Similarity=-0.012 Sum_probs=164.4
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC--cEE
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH--AVV 352 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--~i~ 352 (540)
.....++|+++++++++. ..++.|++||..++ ........ ..... ++|+| +++.|+++..++ .|.
T Consensus 131 ~~P~~la~d~~g~lyv~d----~~~~~I~~id~~~g---~~~~~~~~----~~~~~-ia~~~-~g~~l~~~d~~~~~~I~ 197 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQ----RDDPRVRLISVDDN---KVTTVHPG----FKGGK-PAVTK-DKQRVYSIGWEGTHTVY 197 (409)
T ss_dssp CCEEEEEECSTTEEEEEE----TTTTEEEEEETTTT---EEEEEEET----CCBCB-CEECT-TSSEEEEEBSSTTCEEE
T ss_pred CCceEEEEeCCCCEEEEe----cCCCcEEEEECCCC---EEEEeecc----CCCCc-eeEec-CCCcEEEEecCCCceEE
Confidence 457899999999977777 77899999999865 33333332 12234 99999 888888887766 788
Q ss_pred EEecCCCCCcccccee-ec-ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee----eccCc-cE-E-EEee
Q 009203 353 LWSERDAEDSWKPKAL-HR-NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK----HQIES-KC-M-SVLP 423 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~-~~-~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~-~~-~-~~~~ 423 (540)
+|+...+.. ...+ .. ......+.+++++|++..|+++..++.|+.||..++..... ..... .. . .+++
T Consensus 198 ~~d~~~~~~---~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 198 VYMKASGWA---PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EEEGGGTTC---EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred EEEcCCCce---eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 888876542 1111 00 11345678999999555566677789999999987764332 11111 11 2 8888
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc---ccc-----CccccCeEEEEEcCCCCEEEEEe-CCCcEEEE
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK---QES-----SESQSALINQSWSPDGLYITSGS-ADPVIHLF 494 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~-----~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iw 494 (540)
+|.+. .++++...++.|+.|+..... ....+.. ... ...-.....++|+|+|+++++-. .++.|+.|
T Consensus 275 ~p~~g--~lyv~d~~~~~I~~~~~~g~~--~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 275 YFVDS--NFYMSDQNLSSVYKITPDGEC--EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp ETTTT--EEEEEETTTTEEEEECTTCCE--EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred eCCCC--EEEEEeCCCCEEEEEecCCCE--EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 88532 577777888999999987542 1111110 000 01123588999999999888887 88999999
Q ss_pred eccCCCCccccccccc---------------ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 495 DIRYSANKPSQSIRAH---------------QKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 495 d~~~~~~~~~~~~~~h---------------~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++.+ +. +.++.++ -.....|+++++|.++++-..++.|+.+++
T Consensus 351 ~~~~--G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 351 DILD--GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTT--TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ECCC--CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9764 33 3333333 235889999999988888888899988763
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=1.3e-11 Score=116.67 Aligned_cols=243 Identities=8% Similarity=0.036 Sum_probs=159.3
Q ss_pred CceEEEEEecCCCcEEEE-------EeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeec
Q 009203 224 RKLRSLSLNPVNEQLFVT-------SALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTA 295 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~t-------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~ 295 (540)
....+++|+++ +.++++ +..++.|.+||..+++.. .+... . ..++...+.+++++++ |+++++.
T Consensus 18 ~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~-~--~~~~~~~~~~i~~~~~~g~l~v~~--- 89 (314)
T 1pjx_A 18 PGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKP-E--VNGYGGIPAGCQCDRDANQLFVAD--- 89 (314)
T ss_dssp TTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECC-E--ETTEECCEEEEEECSSSSEEEEEE---
T ss_pred CCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEec-c--cCCCCCCCceEEEecCCCcEEEEE---
Confidence 45789999985 788877 567889999998776542 22110 0 0134456889999999 7656554
Q ss_pred CCCCCeEEEEecCCCCCceeEEe-ecCC-CCcccceeEEEEeCCCCCEEEEEecC---------------CcEEEEecCC
Q 009203 296 DSGDSQISVLNLNKTKGRACVTF-LDDK-PHVKGIINSIIFLPWENPCFATGGSD---------------HAVVLWSERD 358 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~-~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~d---------------g~i~iwd~~~ 358 (540)
. .+.|.+||.. ++ .... .... ......+.++++++ ++.++++...+ +.|..||..
T Consensus 90 -~-~~~l~~~d~~-g~---~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 90 -M-RLGLLVVQTD-GT---FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp -T-TTEEEEEETT-SC---EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred -C-CCCEEEEeCC-CC---EEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 3 4478999987 52 2222 2111 11224588999999 88888777654 567777765
Q ss_pred CCCccccceeecccCCcceeEEEec----cCCCEEEEE-eCCCeEEEEECC-CCCe-----eeeeccC--ccEEEEeecC
Q 009203 359 AEDSWKPKALHRNLHSSAVMGVAGM----QQKQIVLSA-GADKRIIGFDAG-VGRA-----DFKHQIE--SKCMSVLPNP 425 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~v~~l~~s----~~~~~l~~~-~~dg~i~iwd~~-~~~~-----~~~~~~~--~~~~~~~~~~ 425 (540)
++. ..+. .+......++|+ ++++.++.+ ..++.|.+||+. .+.. ....... .....+++++
T Consensus 162 g~~----~~~~--~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 162 GQM----IQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp SCE----EEEE--EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred CCE----EEec--cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 432 2221 133456889999 999766555 567899999986 3432 1111111 4567788888
Q ss_pred CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeccC
Q 009203 426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT-SGSADPVIHLFDIRY 498 (540)
Q Consensus 426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~ 498 (540)
++ .++++...++.|.+||..+++.... + ..+...+.+++|+|+|+.|+ +...++.|..|++..
T Consensus 236 ~G---~l~v~~~~~~~i~~~d~~~g~~~~~-~------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DN---NLLVANWGSSHIEVFGPDGGQPKMR-I------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TC---CEEEEEETTTEEEEECTTCBSCSEE-E------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CC---CEEEEEcCCCEEEEEcCCCCcEeEE-E------eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 77 5677776788999999885543221 1 22346789999999999554 455668899999875
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=9.5e-11 Score=109.70 Aligned_cols=236 Identities=12% Similarity=0.019 Sum_probs=166.8
Q ss_pred CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203 274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL 353 (540)
Q Consensus 274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 353 (540)
...+.++++.++|.+.++. ..++.|.+||.. +.. . ...+. .....+.++++.+ ++.++++...++.|..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~----~~~~~v~~~~~~-~~~-~-~~~~~---~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQ----HKANKISSLDQS-GRI-K-EFEVP---TPDAKVMCLIVSS-LGDIWFTENGANKIGK 87 (300)
T ss_dssp TCCEEEEEECTTSCEEEEE----TTTTEEEEECTT-SCE-E-EEECS---STTCCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred CCCcceeeECCCCCEEEEc----CCCCeEEEECCC-Cce-E-EEECC---CCCCcceeEEECC-CCCEEEEecCCCeEEE
Confidence 3457899999999988877 778999999987 421 1 11121 1235689999998 8888877766788999
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-ec-cCccEEEEeecCCCCCce
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQ-IESKCMSVLPNPCDFNLF 431 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 431 (540)
||.. ++. ..+........+.++++.++|.++++...++.|..||.. ++.... .. .......+.+++++ .
T Consensus 88 ~d~~-g~~----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g---~ 158 (300)
T 2qc5_A 88 LSKK-GGF----TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN---A 158 (300)
T ss_dssp ECTT-SCE----EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS---S
T ss_pred ECCC-CCe----EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC---C
Confidence 9987 542 222222234678999999999988877778899999988 655422 12 23567788888876 5
Q ss_pred EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-ccccc
Q 009203 432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-SIRAH 510 (540)
Q Consensus 432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~h 510 (540)
++++...++.|..||. ++.... + ....+...+.+++++++|.++++....+.|.+|+.. +.... .+..+
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~--~----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~ 228 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEE--Y----PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT---GEISEYDIPTP 228 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEE--E----ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT---CCEEEEECSST
T ss_pred EEEEecCCCeEEEECC-CCcEEE--e----eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC---CcEEEEECCCC
Confidence 6666666789999998 443222 1 112334568999999999887777777889999984 33222 23334
Q ss_pred ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 511 QKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
...+.+++++++|.++++...++.|.+|+
T Consensus 229 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 229 NARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp TCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred CCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 55789999999999777776678888886
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=3.3e-11 Score=112.90 Aligned_cols=227 Identities=7% Similarity=-0.020 Sum_probs=152.5
Q ss_pred ceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 277 PEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 277 V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
..+..|++++. ++++. ..++.|..||..++. ...+.. ...+.++++++ +++++++ . ++.|.+||
T Consensus 15 ~Egp~w~~~~~~l~~~d----~~~~~i~~~d~~~~~----~~~~~~----~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVD----IPAKKVCRWDSFTKQ----VQRVTM----DAPVSSVALRQ-SGGYVAT-I-GTKFCALN 79 (297)
T ss_dssp EEEEEEETTTTEEEEEE----TTTTEEEEEETTTCC----EEEEEC----SSCEEEEEEBT-TSSEEEE-E-TTEEEEEE
T ss_pred ccCCeEECCCCEEEEEE----CCCCEEEEEECCCCc----EEEEeC----CCceEEEEECC-CCCEEEE-E-CCeEEEEE
Confidence 35789999655 55555 788999999998752 122221 35689999999 8885554 4 56799999
Q ss_pred cCCCCCccccceeecc---cCCcceeEEEeccCCCEEEEEeC-----------CCeEEEEECCCCCeeeeeccCccEEEE
Q 009203 356 ERDAEDSWKPKALHRN---LHSSAVMGVAGMQQKQIVLSAGA-----------DKRIIGFDAGVGRADFKHQIESKCMSV 421 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 421 (540)
..+++. ..+... .....+++++++|+|+++++... .+.|..+|.. ++.............+
T Consensus 80 ~~~g~~----~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi 154 (297)
T 3g4e_A 80 WKEQSA----VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGL 154 (297)
T ss_dssp TTTTEE----EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEE
T ss_pred CCCCcE----EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccce
Confidence 987763 222211 12345889999999997765432 2345555543 3433333333456789
Q ss_pred eecCCCCCceEEEEEcCCCeEEEEECC--CCccee-eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 422 LPNPCDFNLFMVQTGTPGRQLRLYDIR--LRQTEI-HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~--~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
+++|++. .++++.+.++.|.+||+. ++.... ..+ ..+..+...+..++++++|++.++...++.|.+||..+
T Consensus 155 ~~spdg~--~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~---~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 155 DWSLDHK--IFYYIDSLSYSVDAFDYDLQTGQISNRRSV---YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EECTTSC--EEEEEEGGGTEEEEEEECTTTCCEEEEEEE---EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred EEcCCCC--EEEEecCCCCcEEEEeccCCCCcccCcEEE---EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 9999873 245667778999999974 333211 111 12233445688999999998888887788899999986
Q ss_pred CCCcccccccccccceeEEEEc-CCCCEEEEEE
Q 009203 499 SANKPSQSIRAHQKRVFKAVWH-YSHPLLISIS 530 (540)
Q Consensus 499 ~~~~~~~~~~~h~~~i~~l~~s-~~~~~l~s~~ 530 (540)
++.+..+..+...+++++|. |+++.|..++
T Consensus 230 --G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 230 --GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp --CCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred --ceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 67777777776789999998 8887665444
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=8.6e-12 Score=118.64 Aligned_cols=281 Identities=9% Similarity=-0.047 Sum_probs=172.8
Q ss_pred EEecCCCcEEEEEeC-----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec------CCC
Q 009203 230 SLNPVNEQLFVTSAL-----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA------DSG 298 (540)
Q Consensus 230 ~~spd~~~~l~tg~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~------~~~ 298 (540)
...|| ++.+..... ++.|.+.|..+.+.+.++... . .+ . ++++|||++++++... |..
T Consensus 39 ~~~pd-~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-------~-~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 39 APAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-------F-LP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-------S-SC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred ccCCC-CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-------C-CC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 34576 555555543 689999999998877666432 1 22 3 9999999998887210 013
Q ss_pred CCeEEEEecCCCCCceeEEeecCC----CCcccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccceeeccc
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDK----PHVKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNL 372 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~ 372 (540)
++.|.+||..+.+ .+..+... .........++|+| ++++++++.. ++.|.++|+.+++.+ ..+...+
T Consensus 108 ~~~VsviD~~t~~---v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv---~tI~v~g 180 (386)
T 3sjl_D 108 TDYVEVFDPVTLL---PTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFK---RMLDVPD 180 (386)
T ss_dssp EEEEEEECTTTCC---EEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEE---EEEECCS
T ss_pred CCEEEEEECCCCe---EEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEE---EEEECCC
Confidence 6789999999873 33333210 00112466899999 9998887763 689999999998752 2222111
Q ss_pred CCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeec----cC-ccE-EEEeec-CCCCCceEEEEEcCCCeEEE
Q 009203 373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQ----IE-SKC-MSVLPN-PCDFNLFMVQTGTPGRQLRL 444 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~----~~-~~~-~~~~~~-~~~~~~~~l~~~~~dg~v~i 444 (540)
+ ...+....+.+++.+.||.+.+.++.. ++...... .. ..+ ....|. +++ .+++ .+.+|.|++
T Consensus 181 ----~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG---~~~~-vs~~g~V~v 251 (386)
T 3sjl_D 181 ----C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG---RLVW-PTYTGKIHQ 251 (386)
T ss_dssp ----E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT---EEEE-EBTTSEEEE
T ss_pred ----c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC---cEEE-EeCCCEEEE
Confidence 1 223333456677888889988888876 55422111 00 111 012232 333 3444 455799999
Q ss_pred EECCCCcce-eeeeccccc----cCccccCeEEEEEcCCCCEEEEEeC----------CCcEEEEeccCCCCcccccccc
Q 009203 445 YDIRLRQTE-IHAFGWKQE----SSESQSALINQSWSPDGLYITSGSA----------DPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 445 ~d~~~~~~~-~~~~~~~~~----~~~~~~~v~~~~~sp~g~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
+|+.+.... ...+..... ..-.......++++++++.++.... .+.|.++|+.+ .+.+..+..
T Consensus 252 ~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t--~kv~~~i~v 329 (386)
T 3sjl_D 252 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--GERLAKFEM 329 (386)
T ss_dssp EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEEE
T ss_pred EECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC--CeEEEEEEC
Confidence 999765421 111110000 0001223345788999988877643 24688999987 777777763
Q ss_pred cccceeEEEEcCCCC-EEEEE-EcCCcEEEEeC
Q 009203 510 HQKRVFKAVWHYSHP-LLISI-SSDLNIGLHKI 540 (540)
Q Consensus 510 h~~~i~~l~~s~~~~-~l~s~-~~dg~v~iw~l 540 (540)
- ..+++|++++|++ +|+++ ..++.|.++|.
T Consensus 330 g-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 330 G-HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp E-EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred C-CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 2 3689999999997 66665 45899999984
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=2.5e-11 Score=115.52 Aligned_cols=265 Identities=10% Similarity=0.023 Sum_probs=161.4
Q ss_pred EEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 228 SLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.++++|| |++|+++. .++.|.+||..+.+...++....... .........++|+|||++|+++ .
T Consensus 82 ~va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r-~~~g~~P~~~a~spDGk~lyVa----n 155 (386)
T 3sjl_D 82 NPVVADD-GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR-FLVGTYPWMTSLTPDGKTLLFY----Q 155 (386)
T ss_dssp EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-CCBSCCGGGEEECTTSSEEEEE----E
T ss_pred cEEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc-cccCCCCceEEEcCCCCEEEEE----E
Confidence 4999997 66665554 36789999999988776664321000 0011246689999999998887 4
Q ss_pred --CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC-CCCccccceeecccCC
Q 009203 298 --GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD-AEDSWKPKALHRNLHS 374 (540)
Q Consensus 298 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~ 374 (540)
.++.|.++|+.++ +.+..+.. .+ + ..+.|.....+++.+.||.+.+.++.+ ++... ..........
T Consensus 156 ~~~~~~VsVID~~t~---~vv~tI~v----~g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~ 224 (386)
T 3sjl_D 156 FSPAPAVGVVDLEGK---AFKRMLDV----PD-C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPED 224 (386)
T ss_dssp CSSSCEEEEEETTTT---EEEEEEEC----CS-E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTT
T ss_pred cCCCCeEEEEECCCC---cEEEEEEC----CC-c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-eecceecccc
Confidence 3689999999986 45555543 11 1 122342556777888899999999876 44210 0000000011
Q ss_pred ccee-EEEec-cCCCEEEEEeCCCeEEEEECCCCCee--eeec--------c---CccEEEEeecCCCCCceEEEEEc--
Q 009203 375 SAVM-GVAGM-QQKQIVLSAGADKRIIGFDAGVGRAD--FKHQ--------I---ESKCMSVLPNPCDFNLFMVQTGT-- 437 (540)
Q Consensus 375 ~~v~-~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--------~---~~~~~~~~~~~~~~~~~~l~~~~-- 437 (540)
..+. ...|. ++|++++ .+.+|.|+++|+.++... .... . ......+.+++++.. .|++...
T Consensus 225 ~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~-lyV~~~~~~ 302 (386)
T 3sjl_D 225 EFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR-IYLLVDQRD 302 (386)
T ss_dssp SCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE-EEEEEEECC
T ss_pred ccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe-EEEEecccc
Confidence 2222 24564 5675555 666899999999866532 1111 0 111123444665532 2332221
Q ss_pred ------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEE-eCCCcEEEEeccCCCCcccccccc
Q 009203 438 ------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSG-SADPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 438 ------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
..+.|.++|+.+.+...... -...+.+++|++|++ +|++. ..++.|.++|..+ ++.+.++..
T Consensus 303 ~~~hk~~~~~V~viD~~t~kv~~~i~--------vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t--~k~~~~i~~ 372 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGERLAKFE--------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES--GEELRSVNQ 372 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEE--------EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT--CCEEEEECC
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEE--------CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC--CcEEEEecC
Confidence 13579999999988644321 123678999999997 66654 5589999999998 777777763
Q ss_pred cccceeEEEEcCC
Q 009203 510 HQKRVFKAVWHYS 522 (540)
Q Consensus 510 h~~~i~~l~~s~~ 522 (540)
-. .-+.|.+++|
T Consensus 373 ~~-~p~~l~~s~d 384 (386)
T 3sjl_D 373 LG-HGPQVITTAD 384 (386)
T ss_dssp CC-SSCCEEEECC
T ss_pred CC-CCceeEECCc
Confidence 32 3456666665
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=2e-10 Score=110.77 Aligned_cols=248 Identities=10% Similarity=-0.046 Sum_probs=154.3
Q ss_pred EEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 228 SLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.++|+|| +++|+.+. .++.|.+||..+.+...++....... ..+......++|+|||++|+++ .
T Consensus 70 ~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-~~~g~~p~~~~~spDG~~l~v~----n 143 (373)
T 2mad_H 70 NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FDVGPYSWMNANTPNNADLLFF----Q 143 (373)
T ss_pred CeEECCC-CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-cccCCCccceEECCCCCEEEEE----e
Confidence 9999997 77777764 36789999998877655553220000 0011234579999999999987 4
Q ss_pred C--CCeEEEEecCCCCCceeEEe-ecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203 298 G--DSQISVLNLNKTKGRACVTF-LDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 298 ~--d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
. ++.|.++| .++ +.+.. +.. . .++.+.|+....+++.+.||.+.++|. +++..............
T Consensus 144 ~~~~~~v~viD-~t~---~~~~~~i~~----~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 144 FAAGPAVGLVV-QGG---SSDDQLLSS----P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA 211 (373)
T ss_pred cCCCCeEEEEE-CCC---CEEeEEcCC----C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence 3 57899999 876 33444 432 1 134556645567777888999999999 76642111000000011
Q ss_pred cc-eeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--eeecc-----------CccEEEEeecCCCCCceEEEEEc---
Q 009203 375 SA-VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD--FKHQI-----------ESKCMSVLPNPCDFNLFMVQTGT--- 437 (540)
Q Consensus 375 ~~-v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~--- 437 (540)
.+ .....+.+++..++..+..+.+.+.|+..+... ..... ......+.++|++. .+++..
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~---~lyV~~~~~ 288 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD---GIYLLTSEQ 288 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC---EEEEEeccC
Confidence 11 223456666666555567889999999765321 11110 11223356777663 333322
Q ss_pred -------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEeccCCCCccccc
Q 009203 438 -------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGS-ADPVIHLFDIRYSANKPSQS 506 (540)
Q Consensus 438 -------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~-~dg~i~iwd~~~~~~~~~~~ 506 (540)
..+.|.++|+.+.+...... ......+++|+|||+ .++++. .++.|.+||+.+ ++.+..
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~--------~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t--~~vv~~ 356 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQIS--------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA--GDQDQS 356 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEE--------CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC--CCEEee
Confidence 24689999999877543321 122578999999999 677776 589999999998 666655
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.45 E-value=8.3e-11 Score=115.10 Aligned_cols=248 Identities=8% Similarity=-0.011 Sum_probs=162.3
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC--
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS-- 300 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~-- 300 (540)
-.....|+|+|+ ++++++...++.|++||..++...... .. ..... ++|+++++.|+++ ..++
T Consensus 130 ~~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~-~~--------~~~~~-ia~~~~g~~l~~~----d~~~~~ 194 (409)
T 3hrp_A 130 FKYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVH-PG--------FKGGK-PAVTKDKQRVYSI----GWEGTH 194 (409)
T ss_dssp CCCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEE-ET--------CCBCB-CEECTTSSEEEEE----BSSTTC
T ss_pred cCCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEee-cc--------CCCCc-eeEecCCCcEEEE----ecCCCc
Confidence 357899999995 888888888899999999876543222 11 12233 9999999988887 5544
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee---cccCCcce
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH---RNLHSSAV 377 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v 377 (540)
.|.+|+...+.....+..+.. .....+.+++++| ++..|+.+..++.|+.||..++.. ..+. ..++...-
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~--~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGS--TFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEV----TLIKQLELSGSLGTN 267 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCT--TSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCE----EEEEECCCCSCCCCS
T ss_pred eEEEEEcCCCceeEEeeeccc--hhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCE----EEEecccccCCCCCC
Confidence 799998876532111111111 1234578899999 545555577788999999987652 2220 11122222
Q ss_pred -e-EEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeecc---------------CccEEEEeecCCCCCceEEEEEc-C
Q 009203 378 -M-GVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQI---------------ESKCMSVLPNPCDFNLFMVQTGT-P 438 (540)
Q Consensus 378 -~-~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~-~ 438 (540)
. .++|+|+ +.++++...++.|+.||.... ....... -.....+++++++ .++++-. .
T Consensus 268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG---~lyvad~~~ 343 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG---NFYIVDGFK 343 (409)
T ss_dssp SCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC---CEEEEETTT
T ss_pred ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC---CEEEEeCCC
Confidence 3 9999995 666666667889999998743 2211111 1346789999987 5777777 8
Q ss_pred CCeEEEEECCCCcceeeeeccccc--------cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 439 GRQLRLYDIRLRQTEIHAFGWKQE--------SSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 439 dg~v~i~d~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
++.|+.||+.++.. ....+.... ....-..+..++++++|.++++-..++.|+.++++
T Consensus 344 ~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 344 GYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp TCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 89999999776552 211111000 00112468999999999888888888999888753
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=3e-11 Score=117.12 Aligned_cols=266 Identities=8% Similarity=-0.058 Sum_probs=164.7
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec------CCCCCeEEEEecCCCCCceeEEee
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA------DSGDSQISVLNLNKTKGRACVTFL 319 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~------~~~d~~i~vwd~~~~~~~~~~~~~ 319 (540)
+.|.++|..+.+.+.++.... .+ .++++|||++|+++... |..++.|.++|..+.+. +..+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~--------~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v---v~~I 165 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF--------LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP---IADI 165 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS--------SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE---EEEE
T ss_pred CeEEEEECCCCEEEEEEECCC--------CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE---EEEE
Confidence 799999999988777765321 23 79999999999887210 01467899999998733 3333
Q ss_pred cCC--CC--cccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEE
Q 009203 320 DDK--PH--VKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSA 392 (540)
Q Consensus 320 ~~~--~~--~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~ 392 (540)
... .. .......+.|+| ++++++++.. ++.|.+.|+.+.+.+ ..+... + . ....|++ ..+++.
T Consensus 166 ~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv---~~I~v~---g-~--~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 166 ELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFD---RMLDVP---D-C--YHIFPASPTVFYMN 235 (426)
T ss_dssp EETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEE---EEEECC---S-E--EEEEEEETTEEEEE
T ss_pred ECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEE---EEEEcC---C-c--eeeccCCCcEEEEE
Confidence 210 00 012356789999 9999888764 578999999998752 222211 1 1 2223332 555666
Q ss_pred eCCCeEEEEECCCCCeeee----eccCcc--EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee-eeeccc--c--
Q 009203 393 GADKRIIGFDAGVGRADFK----HQIESK--CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI-HAFGWK--Q-- 461 (540)
Q Consensus 393 ~~dg~i~iwd~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~--~-- 461 (540)
+.||.+.+.+..+++.... +..... ...+.+.+++ ..++..+..+.|.+.|+....... ..+... .
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg---~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i 312 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS---GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER 312 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT---CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC---CEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence 7778877777755554321 111111 1123345554 233334567899999987544221 111000 0
Q ss_pred ccCccccCeEEEEEcCCCCEEEEEeC----------CCcEEEEeccCCCCcccccccccccceeEEEEcCCCC-EEEEEE
Q 009203 462 ESSESQSALINQSWSPDGLYITSGSA----------DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLISIS 530 (540)
Q Consensus 462 ~~~~~~~~v~~~~~sp~g~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~ 530 (540)
...........++++|+++.+++... ++.|.++|+.+ .+.+.++.... ..++++|+|||+ +++++.
T Consensus 313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T--~kvv~~I~vg~-~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET--GERINKIELGH-EIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEEEEE-EECEEEECCSSSCEEEEEE
T ss_pred ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC--CeEEEEEECCC-CcCeEEEccCCCEEEEEEc
Confidence 00001112223689999987776542 35799999998 77787776332 589999999999 888888
Q ss_pred -cCCcEEEEeC
Q 009203 531 -SDLNIGLHKI 540 (540)
Q Consensus 531 -~dg~v~iw~l 540 (540)
.++.|.|+|+
T Consensus 390 ~~s~~VsVID~ 400 (426)
T 3c75_H 390 AGTQTLHIYDA 400 (426)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEEC
Confidence 5899999985
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=4.7e-11 Score=112.31 Aligned_cols=230 Identities=10% Similarity=0.026 Sum_probs=151.5
Q ss_pred CceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203 276 WPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW 354 (540)
Q Consensus 276 ~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 354 (540)
......|+++|+ ++++. ..++.|..|+.. +. ...+.. ....+.++++++ +++++++...++.|.+|
T Consensus 46 ~~egp~~~~~g~~l~~~d----~~~~~i~~~~~~-g~----~~~~~~---~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSD----LVGRRVLGWRED-GT----VDVLLD---ATAFTNGNAVDA-QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp SEEEEEEEGGGTEEEEEE----TTTTEEEEEETT-SC----EEEEEE---SCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred CccCCeEeCCCCEEEEEE----CCCCEEEEEeCC-CC----EEEEeC---CCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence 356799999998 55666 788999999884 32 222221 235689999999 88877666666889999
Q ss_pred ecCCCCCccccceeec--c-cCCcceeEEEeccCCCEEEE----EeC-------------CCeEEEEECCCCCeeeeecc
Q 009203 355 SERDAEDSWKPKALHR--N-LHSSAVMGVAGMQQKQIVLS----AGA-------------DKRIIGFDAGVGRADFKHQI 414 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~--~-~~~~~v~~l~~s~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~ 414 (540)
+.. +.. ..+.. . .....+.+++++++|+++++ |.. .+.|..||..+++..... .
T Consensus 113 ~~~-g~~----~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~ 186 (305)
T 3dr2_A 113 DAD-GQA----HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D 186 (305)
T ss_dssp CTT-SCE----EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred CCC-CCE----EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence 986 442 22211 1 11245778999999998886 332 256888888777654433 3
Q ss_pred CccEEEEeecCCCCCceEEEEEcCC------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203 415 ESKCMSVLPNPCDFNLFMVQTGTPG------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD 488 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d 488 (540)
......++++|++ ..|+.+... +.|.+||+.... ......+ .......+..++++++|++.++ +.+
T Consensus 187 ~~~p~gl~~spdg---~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~---~~~~~~~pdgi~~d~~G~lwv~-~~~ 258 (305)
T 3dr2_A 187 LDHPNGLAFSPDE---QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHF---ASVPDGLPDGFCVDRGGWLWSS-SGT 258 (305)
T ss_dssp ESSEEEEEECTTS---SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEE---ECCSSSCCCSEEECTTSCEEEC-CSS
T ss_pred CCCCcceEEcCCC---CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEE---EECCCCCCCeEEECCCCCEEEe-cCC
Confidence 3456788999987 445555443 789999987544 1110000 0112234567899999995444 455
Q ss_pred CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 489 PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 489 g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
| |.+|+.. ++.+..+..+. .+.+++|+++++.|..++.++..++
T Consensus 259 g-v~~~~~~---g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 259 G-VCVFDSD---GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp E-EEEECTT---SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred c-EEEECCC---CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 5 9999985 56666666554 5899999999988888877654443
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=2.7e-10 Score=108.09 Aligned_cols=225 Identities=10% Similarity=0.011 Sum_probs=147.5
Q ss_pred eeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203 278 EDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE 356 (540)
Q Consensus 278 ~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 356 (540)
.+.+|+|++. ++++. ..++.|..||..++ .. ..+.. ...+.+++|+| ++.++++. . ..|.+||.
T Consensus 52 egp~~~~~~~~l~~~d----~~~~~i~~~d~~~~---~~-~~~~~----~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~ 116 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFN----ILERELHELHLASG---RK-TVHAL----PFMGSALAKIS-DSKQLIAS-D-DGLFLRDT 116 (326)
T ss_dssp EEEEEETTTTEEEEEE----GGGTEEEEEETTTT---EE-EEEEC----SSCEEEEEEEE-TTEEEEEE-T-TEEEEEET
T ss_pred cCCeEeCCCCEEEEEE----CCCCEEEEEECCCC---cE-EEEEC----CCcceEEEEeC-CCeEEEEE-C-CCEEEEEC
Confidence 4689999755 45555 67889999999865 22 22221 24689999999 88777654 4 44999999
Q ss_pred CCCCCccccceeecc---cCCcceeEEEeccCCCEEEEEeC------CCeEEEEECCCCCeeeeeccCccEEEEeecCCC
Q 009203 357 RDAEDSWKPKALHRN---LHSSAVMGVAGMQQKQIVLSAGA------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCD 427 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (540)
.+++. ..+... .....+.+++++|+|+++++... .+.|..+| +++.............++++|++
T Consensus 117 ~~g~~----~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 117 ATGVL----TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDG 190 (326)
T ss_dssp TTCCE----EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTS
T ss_pred CCCcE----EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCC
Confidence 87763 222111 12346889999999997765542 25677777 45443222222345688899887
Q ss_pred CCceEEEEEcCCCeEEEEECC--CC-ccee-eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc
Q 009203 428 FNLFMVQTGTPGRQLRLYDIR--LR-QTEI-HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP 503 (540)
Q Consensus 428 ~~~~~l~~~~~dg~v~i~d~~--~~-~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~ 503 (540)
. .++++.+.++.|.+||+. ++ .... ..+ ..+......+.+++++++|.+.++...++.|.+||.. ++.
T Consensus 191 ~--~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~---~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~---g~~ 262 (326)
T 2ghs_A 191 T--TGYFVDTKVNRLMRVPLDARTGLPTGKAEVF---IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD---GNH 262 (326)
T ss_dssp C--EEEEEETTTCEEEEEEBCTTTCCBSSCCEEE---EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT---CCE
T ss_pred C--EEEEEECCCCEEEEEEcccccCCcccCceEE---EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC---CCE
Confidence 2 234555667899999986 44 2110 111 0112233457889999999888777677889999984 566
Q ss_pred cccccccccceeEEEEc-CCCCEEEEEEc
Q 009203 504 SQSIRAHQKRVFKAVWH-YSHPLLISISS 531 (540)
Q Consensus 504 ~~~~~~h~~~i~~l~~s-~~~~~l~s~~~ 531 (540)
+..+..+...+++++|+ +++..|+.++.
T Consensus 263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 263 IARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 66666666679999998 88876655443
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.41 E-value=1.5e-11 Score=117.79 Aligned_cols=277 Identities=9% Similarity=-0.029 Sum_probs=168.1
Q ss_pred CceEEEEEecCCCcEEEEEe--CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC---
Q 009203 224 RKLRSLSLNPVNEQLFVTSA--LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG--- 298 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~--- 298 (540)
..+..|+++|+ |+++++.. .++.++||.+.+++ +..+.. ......+|...+.+++|+++|+++++- ..
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~-~~~~~~~~~~~p~gv~~d~~g~L~v~D----~g~~~ 89 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQDG-LIPFPP-QSGNAIITFDTVLGIKSDGNGIVWMLD----NGNQS 89 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEETTE-EEESCC-CCSSCCCCCSCEEEEEECSSSEEEEEE----CHHHH
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEECCCC-eecCCC-cccCcccceeEeeEEEEcCCCcEEEEc----CCCCc
Confidence 67899999996 88888864 23436777776332 221111 011123567789999999998766654 33
Q ss_pred --CCeEEEEecCCCCCceeEEeecCC---CCcccceeEEEEeCCCCCEEEEEe---cCCcEEEEecCCCCCccccceeec
Q 009203 299 --DSQISVLNLNKTKGRACVTFLDDK---PHVKGIINSIIFLPWENPCFATGG---SDHAVVLWSERDAEDSWKPKALHR 370 (540)
Q Consensus 299 --d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~ 370 (540)
++.|.+||+.++ ..+..+... ..+...+..+++++.++..+++.. .++.|.+||+.+++. ...+
T Consensus 90 ~~~~~i~~~d~~tg---~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---~r~~-- 161 (343)
T 2qe8_A 90 KSVPKLVAWDTLNN---QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---ARVL-- 161 (343)
T ss_dssp TSCCEEEEEETTTT---EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE---EEEC--
T ss_pred CCCCeEEEEECCCC---eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE---EEEe--
Confidence 578999999876 333333221 112345789999983455556655 678999999987763 1111
Q ss_pred ccCCcce-eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC-eEEEEECC
Q 009203 371 NLHSSAV-MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIR 448 (540)
Q Consensus 371 ~~~~~~v-~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~ 448 (540)
.+|.... ....+.++|..+.+.+.++.+..|.. ....++++|++ ..|+.+...+ .+..++..
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-------------~~~gia~s~dg---~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-------------GVNGIVLDAEN---EWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCCC-------------CEEEEEECTTS---CEEEEEESSCSEEEEEEHH
T ss_pred cCCCcccccccceeECCEEEEeccCCCceeceec-------------ccceeEeccCC---CEEEEEeCCCCeEEEEEHH
Confidence 1221111 01445567777777788888766642 34678899977 4566555544 55555532
Q ss_pred C---CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCC
Q 009203 449 L---RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHP 524 (540)
Q Consensus 449 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~ 524 (540)
. ...............++......++++++|.++++...++.|.+||..+ ++....... +...+.+++|.++|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~--G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 226 DLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD--RAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT--TEEEEEEECGGGSCEEEEEECTTSC
T ss_pred HhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC--CCEEEEEECCceecCCeeEECCCCc
Confidence 1 1000000000000112334567899999999999998999999999843 332222211 244689999999999
Q ss_pred EEEEEEcCC
Q 009203 525 LLISISSDL 533 (540)
Q Consensus 525 ~l~s~~~dg 533 (540)
++++.+..+
T Consensus 304 l~v~~~~~~ 312 (343)
T 2qe8_A 304 LYFDCNQLH 312 (343)
T ss_dssp EEEEECCGG
T ss_pred EEEEeCccc
Confidence 888876443
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=6.3e-12 Score=120.10 Aligned_cols=175 Identities=10% Similarity=0.021 Sum_probs=127.7
Q ss_pred ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-------ccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEE
Q 009203 328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAED-------SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIG 400 (540)
Q Consensus 328 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~i 400 (540)
.++.+++++ ...++++|+.++ +.+|++..... ....... ..+.. |+.++| ++.+|+++ .++.|++
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~--~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE--KEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE--EECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE--eeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 589999999 888999999875 66798754320 0111111 12556 999999 89999998 8899999
Q ss_pred EECCCCCeee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203 401 FDAGVGRADF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG 479 (540)
Q Consensus 401 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 479 (540)
||+++..... .......+.++.+.+. .+++++.||.|.+||+.++.... +...|++++|||+|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p-----~~av~~~dG~L~v~dl~~~~~~~-----------~~~~Vs~v~WSpkG 174 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN-----TLVILNSVNDLSALDLRTKSTKQ-----------LAQNVTSFDVTNSQ 174 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS-----EEEEEETTSEEEEEETTTCCEEE-----------EEESEEEEEECSSE
T ss_pred EEchhhhccCccceeecceeeEEecCC-----CEEEEECCCCEEEEEccCCcccc-----------ccCCceEEEEcCCc
Confidence 9998755422 2233445566666543 37888999999999999766421 34589999999999
Q ss_pred CEEEEEeCCCcEEEEeccCCCCcc--cccc------c---ccccceeEEEEcCCCCEEEEEE
Q 009203 480 LYITSGSADPVIHLFDIRYSANKP--SQSI------R---AHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 480 ~~l~sg~~dg~i~iwd~~~~~~~~--~~~~------~---~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
++.|..||.+++|+... ... ..++ . +|...|.+|.|.+++.+|++=+
T Consensus 175 --~~vg~~dg~i~~~~~~~--~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 175 --LAVLLKDRSFQSFAWRN--GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp --EEEEETTSCEEEEEEET--TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred --eEEEEcCCcEEEEcCCC--ccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 77899999999998886 232 3333 2 3678899999999998887643
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=4.7e-10 Score=104.97 Aligned_cols=233 Identities=12% Similarity=0.060 Sum_probs=149.9
Q ss_pred cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
.+..-..+..|+|+++.++++...++.|..||..++.. ..+ .....+.+++++++|+++++. ++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~---------~~~~~~~~i~~~~dG~l~v~~------~~ 73 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV---------TMDAPVSSVALRQSGGYVATI------GT 73 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE---------ECSSCEEEEEEBTTSSEEEEE------TT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE---------eCCCceEEEEECCCCCEEEEE------CC
Confidence 34445678999997678888888899999999987653 122 123458899999999955543 56
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC---------CcEEEEecCCCCCccccceeecc
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD---------HAVVLWSERDAEDSWKPKALHRN 371 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~ 371 (540)
.|.+||..++.. ..+..... ......+..++++| +++++++...+ ..-.+|.+..... ...+.
T Consensus 74 ~l~~~d~~~g~~-~~~~~~~~-~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---~~~~~-- 145 (297)
T 3g4e_A 74 KFCALNWKEQSA-VVLATVDN-DKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH---VKKYF-- 145 (297)
T ss_dssp EEEEEETTTTEE-EEEEECCT-TCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC---EEEEE--
T ss_pred eEEEEECCCCcE-EEEEecCC-CCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCC---EEEEe--
Confidence 899999987521 11111111 11124588999999 88877654322 2234555443221 12221
Q ss_pred cCCcceeEEEeccCCCEEEE-EeCCCeEEEEEC--CCCCee-----eee-ccCccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203 372 LHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDA--GVGRAD-----FKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQL 442 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~--~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v 442 (540)
......+.++|+|+++.|+. .+.++.|.+||+ .++... ... ........+++++++ .+.++...++.|
T Consensus 146 ~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G---~lwva~~~~~~v 222 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG---KLWVACYNGGRV 222 (297)
T ss_dssp EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS---CEEEEEETTTEE
T ss_pred eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC---CEEEEEcCCCEE
Confidence 13345689999999987654 555789999987 455431 111 123456788888877 566777777899
Q ss_pred EEEECCCCcceeeeeccccccCccccCeEEEEEc-CCCCEEEEEeC
Q 009203 443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWS-PDGLYITSGSA 487 (540)
Q Consensus 443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~sg~~ 487 (540)
.+||..+++..... ..+...+++++|. |+++.|+.++.
T Consensus 223 ~~~d~~tG~~~~~i-------~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 223 IRLDPVTGKRLQTV-------KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECTTTCCEEEEE-------ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEcCCCceEEEEE-------ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 99999877643321 2233578999998 88877665543
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.39 E-value=4.2e-11 Score=125.99 Aligned_cols=254 Identities=10% Similarity=0.058 Sum_probs=156.1
Q ss_pred EEeccchhcccccCceEEEEEecCCCcEEEEE-----eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC
Q 009203 211 HCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTS-----ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ 285 (540)
Q Consensus 211 ~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg-----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 285 (540)
.+.|.+..-.+|...+..++|||| |++||.+ +.+..|++||+.+++........ .....++|+ |
T Consensus 116 vllD~n~la~~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~---------~k~~~~~Ws-D 184 (693)
T 3iuj_A 116 VFLDPNTLSPDGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD---------VKFSGISWL-G 184 (693)
T ss_dssp EEECGGGGSTTSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE---------EESCCCEEE-T
T ss_pred EEEehhhccCCCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCccccCC---------ceeccEEEe-C
Confidence 345666555678888999999997 7777743 33367999999998743321110 012468999 9
Q ss_pred CCeEEEEeecCCCC-------------CeEEEEecCCCCCceeEEeecCCCC-cccceeEEEEeCCCCCEEEEEec----
Q 009203 286 GNSLFSAHTADSGD-------------SQISVLNLNKTKGRACVTFLDDKPH-VKGIINSIIFLPWENPCFATGGS---- 347 (540)
Q Consensus 286 ~~~l~s~~~~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~---- 347 (540)
|+.|+.+ +.+ ..|++|++.++... ....+.. .. +...+.++.|+| ++++|+....
T Consensus 185 g~~l~y~----~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~~v~~~-~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~ 257 (693)
T 3iuj_A 185 NEGFFYS----SYDKPDGSELSARTDQHKVYFHRLGTAQED-DRLVFGA-IPAQHHRYVGATVTE-DDRFLLISAANSTS 257 (693)
T ss_dssp TTEEEEE----ESSCCC-------CCCCEEEEEETTSCGGG-CEEEESC-SGGGCCSEEEEEECT-TSCEEEEEEESSSS
T ss_pred CCEEEEE----EecCcccccccccCCCcEEEEEECCCCccc-ceEEEec-CCCCCeEEEEEEEcC-CCCEEEEEEccCCC
Confidence 9988887 444 45999999876332 1223332 11 234578899999 8888755432
Q ss_pred CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C---CeEEEEECCCCCe---eeeeccCccEEE
Q 009203 348 DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D---KRIIGFDAGVGRA---DFKHQIESKCMS 420 (540)
Q Consensus 348 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d---g~i~iwd~~~~~~---~~~~~~~~~~~~ 420 (540)
+..|+++|+.++... ...+. .+....... |+++|..|+..+. + +.|..+|+.++.. ...........
T Consensus 258 ~~~i~~~d~~~~~~~--~~~l~--~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~- 331 (693)
T 3iuj_A 258 GNRLYVKDLSQENAP--LLTVQ--GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL- 331 (693)
T ss_dssp CCEEEEEETTSTTCC--CEEEE--CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-
T ss_pred CcEEEEEECCCCCCc--eEEEe--CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-
Confidence 248999999876421 23332 244444444 5666666555443 3 5799999988654 22222222333
Q ss_pred EeecCCCCCceEEEEEcCCC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC----CcEEEE
Q 009203 421 VLPNPCDFNLFMVQTGTPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD----PVIHLF 494 (540)
Q Consensus 421 ~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d----g~i~iw 494 (540)
.+++++. .++++...++ .|++||+....... + .+ ...+.+..+.+++++..|+....+ +.|+.|
T Consensus 332 -~~s~~g~--~lv~~~~~~g~~~l~~~d~~g~~~~~--l----~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~ 401 (693)
T 3iuj_A 332 -TVHSGSG--YLFAEYMVDATARVEQFDYEGKRVRE--V----AL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRF 401 (693)
T ss_dssp -EEEEETT--EEEEEEEETTEEEEEEECTTSCEEEE--E----CC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEE
T ss_pred -EEEEECC--EEEEEEEECCeeEEEEEECCCCeeEE--e----ec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEE
Confidence 5555542 2444444454 68899987543211 1 11 233457778888888877665444 789999
Q ss_pred eccC
Q 009203 495 DIRY 498 (540)
Q Consensus 495 d~~~ 498 (540)
|+.+
T Consensus 402 d~~~ 405 (693)
T 3iuj_A 402 EPKS 405 (693)
T ss_dssp CTTT
T ss_pred ECCC
Confidence 9876
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.34 E-value=1.9e-09 Score=102.24 Aligned_cols=224 Identities=10% Similarity=0.027 Sum_probs=143.1
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV 304 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v 304 (540)
-..+.+|+|+++.+++++..++.|.+||..++.. ..+. ....+.+++|+++|+++++. .+ .|.+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~---------~~~~v~~i~~~~dg~l~v~~-----~~-gl~~ 113 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA---------LPFMGSALAKISDSKQLIAS-----DD-GLFL 113 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE---------CSSCEEEEEEEETTEEEEEE-----TT-EEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEE---------CCCcceEEEEeCCCeEEEEE-----CC-CEEE
Confidence 4577899997677888888889999999987542 1111 12458899999999877764 33 4999
Q ss_pred EecCCCCCceeEEeecCC-CCcccceeEEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeecccCCcce
Q 009203 305 LNLNKTKGRACVTFLDDK-PHVKGIINSIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
||..++.. ....... ......+.+++++| ++.++++... .+.|..++ +++ ...+. .+....
T Consensus 114 ~d~~~g~~---~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~----~~~~~--~~~~~~ 181 (326)
T 2ghs_A 114 RDTATGVL---TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGK----VTKLF--ADISIP 181 (326)
T ss_dssp EETTTCCE---EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTE----EEEEE--EEESSE
T ss_pred EECCCCcE---EEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCc----EEEee--CCCccc
Confidence 99887632 2221111 11124588999999 8887765542 24555555 343 22221 123456
Q ss_pred eEEEeccCCCEEEEE-eCCCeEEEEECC--CC-Ce----ee-eec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEEC
Q 009203 378 MGVAGMQQKQIVLSA-GADKRIIGFDAG--VG-RA----DF-KHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDI 447 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~-~~dg~i~iwd~~--~~-~~----~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~ 447 (540)
..++|+|+|+.++.+ +.++.|.+||+. ++ .. .. ... .......+.+++++ .++++...++.|.+||.
T Consensus 182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G---~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG---HIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS---CEEEEEETTTEEEEECT
T ss_pred CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC---CEEEEEeCCCEEEEECC
Confidence 789999999876555 457899999986 55 32 11 111 23445678888876 45666656789999998
Q ss_pred CCCcceeeeeccccccCccccCeEEEEEc-CCCCEEEEEeC
Q 009203 448 RLRQTEIHAFGWKQESSESQSALINQSWS-PDGLYITSGSA 487 (540)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~sg~~ 487 (540)
. ++. ...+ ..+...+++++|+ ++++.|++++.
T Consensus 259 ~-g~~-~~~i------~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 259 D-GNH-IARY------EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp T-CCE-EEEE------ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred C-CCE-EEEE------ECCCCCcEEEEEecCCCCEEEEEec
Confidence 4 332 2222 1233468999998 88877655543
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=3.8e-10 Score=118.65 Aligned_cols=245 Identities=12% Similarity=0.043 Sum_probs=150.3
Q ss_pred CCCCCceeEEEecCCCeEEEEeec-CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-
Q 009203 272 KHRRWPEDIAWHPQGNSLFSAHTA-DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH- 349 (540)
Q Consensus 272 ~h~~~V~~~~~~~~~~~l~s~~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg- 349 (540)
+|...+..++|||||++||.+... |+....|++||+.+++. ....+.. .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~--~~~~~~~-----~k~~~~~Ws--Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP--LETPLKD-----VKFSGISWL--GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE--EEEEEEE-----EESCCCEEE--TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC--CccccCC-----ceeccEEEe--CCCEEEEEEecCc
Confidence 455668889999999998876433 23447899999998732 1112211 113577899 677777777664
Q ss_pred ------------cEEEEecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeC----CCeEEEEECCCCC--eee
Q 009203 350 ------------AVVLWSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGA----DKRIIGFDAGVGR--ADF 410 (540)
Q Consensus 350 ------------~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~--~~~ 410 (540)
.|++|++.++.... ........ |...+.++.|+|||++|+.... +..|+++|+.++. ...
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~-~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDD-RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGC-EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred ccccccccCCCcEEEEEECCCCcccc-eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 39999998765210 11222222 3445788999999998865443 3489999998763 222
Q ss_pred eeccCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCCcce-eeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203 411 KHQIESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLRQTE-IHAFGWKQESSESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
........... +++++. .+++.... .+.|..+|+.++... .. .+..|...+. .|++++++|+...
T Consensus 276 l~~~~~~~~~~-~~~~g~--~l~~~t~~~~~~~~l~~~d~~~~~~~~~~------~l~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGS--TLYLLTNRDAPNRRLVTVDAANPGPAHWR------DLIPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp EECSSSSCEEE-EEEETT--EEEEEECTTCTTCEEEEEETTSCCGGGCE------EEECCCSSCE--EEEEETTEEEEEE
T ss_pred EeCCCCceEEE-EeccCC--EEEEEECCCCCCCEEEEEeCCCCCccccE------EEecCCCCEE--EEEEECCEEEEEE
Confidence 22222222222 333332 34445444 368999999876531 11 1223444444 8899999887665
Q ss_pred CC-C--cEEEEeccCCCCccccccc-ccccceeEEEEcCCCCEEEEEEcC----CcEEEEeC
Q 009203 487 AD-P--VIHLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHPLLISISSD----LNIGLHKI 540 (540)
Q Consensus 487 ~d-g--~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~~l~s~~~d----g~v~iw~l 540 (540)
.+ + .|++|++.. .....+. ...+.+..+.+++++..|+....+ +.|..||+
T Consensus 345 ~~~g~~~l~~~d~~g---~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 345 MVDATARVEQFDYEG---KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EETTEEEEEEECTTS---CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EECCeeEEEEEECCC---CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 44 3 688888874 2333332 234567788888888766655444 77888774
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=1.5e-10 Score=108.80 Aligned_cols=228 Identities=11% Similarity=0.056 Sum_probs=145.0
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
.....+..|+|++..+++++..++.|..|+.. ++ ...+. .+...+..++++++|+++++. ..++.|
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~--------~~~~~~~gl~~d~dG~l~v~~----~~~~~v 109 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLL--------DATAFTNGNAVDAQQRLVHCE----HGRRAI 109 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEE--------ESCSCEEEEEECTTSCEEEEE----TTTTEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEe--------CCCCccceeeECCCCCEEEEE----CCCCEE
Confidence 35678899999743478888888999999873 33 22221 223457899999999977776 667899
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE----Eec-------------CCcEEEEecCCCCCcccc
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT----GGS-------------DHAVVLWSERDAEDSWKP 365 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~ 365 (540)
.+|+.. +........... .....+.++++.| ++.++++ |.. .+.|..||..+++.
T Consensus 110 ~~~~~~-g~~~~~~~~~~~--~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~---- 181 (305)
T 3dr2_A 110 TRSDAD-GQAHLLVGRYAG--KRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL---- 181 (305)
T ss_dssp EEECTT-SCEEEEECEETT--EECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC----
T ss_pred EEECCC-CCEEEEEeccCC--CccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE----
Confidence 999986 421111111111 1123477899999 9988886 332 24677788766653
Q ss_pred ceeecccCCcceeEEEeccCCCEEEEEeCC------CeEEEEECCCCCe----eeeeccCccEEEEeecCCCCCceEEEE
Q 009203 366 KALHRNLHSSAVMGVAGMQQKQIVLSAGAD------KRIIGFDAGVGRA----DFKHQIESKCMSVLPNPCDFNLFMVQT 435 (540)
Q Consensus 366 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 435 (540)
..+. .......++|+|+++.|+.+... +.|.+||+..+.. ............+.+++++ . |.+
T Consensus 182 ~~~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G---~-lwv 254 (305)
T 3dr2_A 182 QRMA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG---W-LWS 254 (305)
T ss_dssp EEEE---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS---C-EEE
T ss_pred EEEe---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC---C-EEE
Confidence 2221 23456789999999988777665 6899999875431 1111112233456677766 3 444
Q ss_pred EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203 436 GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP 489 (540)
Q Consensus 436 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg 489 (540)
+.. +.|.+||... +. ...+. ... .+.+++|+++++.|+.++.++
T Consensus 255 ~~~-~gv~~~~~~g-~~-~~~~~------~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 255 SSG-TGVCVFDSDG-QL-LGHIP------TPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CCS-SEEEEECTTS-CE-EEEEE------CSS-CCCEEEECTTSCEEEEEETTE
T ss_pred ecC-CcEEEECCCC-CE-EEEEE------CCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 444 4599999853 32 22211 112 478899999999888887765
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.32 E-value=5.9e-10 Score=108.06 Aligned_cols=250 Identities=11% Similarity=0.022 Sum_probs=157.0
Q ss_pred EEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 228 SLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.++++|| +++|+++. .++.|.++|..+.+...++....... .........++|+|||++|+++ .
T Consensus 122 gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r-~~~g~~P~~~~~spDGk~lyV~----n 195 (426)
T 3c75_H 122 HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR-FLVGTYQWMNALTPDNKNLLFY----Q 195 (426)
T ss_dssp EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-CCBSCCGGGSEECTTSSEEEEE----E
T ss_pred ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc-cccCCCcceEEEcCCCCEEEEE----e
Confidence 8999997 66555554 46789999999988776664320000 0011335689999999999987 4
Q ss_pred C--CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc-ceeecccCC
Q 009203 298 G--DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP-KALHRNLHS 374 (540)
Q Consensus 298 ~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~ 374 (540)
. ++.|.+.|+.+. +.+..+.. .+ . ....|.....+++.+.||.+.+.+..+++..... ..+. ...
T Consensus 196 ~~~~~~VsVID~~t~---kvv~~I~v----~g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~--v~~ 263 (426)
T 3c75_H 196 FSPAPAVGVVDLEGK---TFDRMLDV----PD-C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH--TED 263 (426)
T ss_dssp CSSSCEEEEEETTTT---EEEEEEEC----CS-E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS--CTT
T ss_pred cCCCCeEEEEECCCC---eEEEEEEc----CC-c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec--cCC
Confidence 3 688999999986 44555543 11 1 2333423456677777888888888554421100 0010 011
Q ss_pred cc-eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--ecc-----------CccEEEEeecCCCCCceEEEEEc---
Q 009203 375 SA-VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQI-----------ESKCMSVLPNPCDFNLFMVQTGT--- 437 (540)
Q Consensus 375 ~~-v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~l~~~~--- 437 (540)
.+ ...+.|.+++..++..+..+.+.+.|...+..... ... ......+.++|++. +++++..
T Consensus 264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~--rlyVa~~~~~ 341 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD--RIYLLVDQRD 341 (426)
T ss_dssp SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT--EEEEEEEECC
T ss_pred CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC--EEEEEecccc
Confidence 11 12456788988888888889999999976543211 100 01111246677653 2333322
Q ss_pred ------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEeccCCCCcccccc
Q 009203 438 ------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGS-ADPVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 438 ------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~-~dg~i~iwd~~~~~~~~~~~~ 507 (540)
.++.|.++|+.+.+...... -.....++.|+|||+ ++++.. .++.|.++|+.+ .+.+.++
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~--------vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t--~kvv~tI 409 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIE--------LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT--GEELRSV 409 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEE--------EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT--CCEEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEE--------CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC--CCEEEEe
Confidence 23579999999887544321 112578999999999 888777 589999999998 6777775
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=1.9e-10 Score=109.93 Aligned_cols=181 Identities=8% Similarity=0.066 Sum_probs=130.3
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC--------CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK--------GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS 347 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 347 (540)
.++.+++++...++++| +.+ .+.+|++.... ......... +.. |..++| ++.+|+++ .
T Consensus 39 ~~nlLais~~~gll~a~----~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~----lp~-V~~l~f---d~~~L~v~-~ 104 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAA----SGS-KAVVGELQLLRDHITSDSTPLTFKWEKE----IPD-VIFVCF---HGDQVLVS-T 104 (388)
T ss_dssp CCBCEEEETTTTEEEEE----ETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE----CTT-EEEEEE---ETTEEEEE-E
T ss_pred cccEEEEcCCCCEEEEe----CCC-EEEEEEhhHhhhhhccccccccceEEee----CCC-eeEEEE---CCCEEEEE-c
Confidence 58899999999999998 666 56669876432 001111111 235 999999 67888888 8
Q ss_pred CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCC
Q 009203 348 DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCD 427 (540)
Q Consensus 348 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (540)
++.|++||+.+... .... ..|...+.++.+.+. .+++++.||.|.+||+.++.... ....+.+++|+|.+
T Consensus 105 ~~~l~v~dv~sl~~---~~~~--~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG 174 (388)
T 1xip_A 105 RNALYSLDLEELSE---FRTV--TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ 174 (388)
T ss_dssp SSEEEEEESSSTTC---EEEE--EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE
T ss_pred CCcEEEEEchhhhc---cCcc--ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc
Confidence 89999999987653 2222 236667888887653 38889999999999999877643 44678999999986
Q ss_pred CCceEEEEEcCCCeEEEEECCCCcce-eeeeccccccC---ccccCeEEEEEcCCCCEEEEE
Q 009203 428 FNLFMVQTGTPGRQLRLYDIRLRQTE-IHAFGWKQESS---ESQSALINQSWSPDGLYITSG 485 (540)
Q Consensus 428 ~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~sg 485 (540)
++.|..||++++|+....... ...+.....+. +|...|.++.|.+++.++++-
T Consensus 175 -----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 175 -----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp -----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred -----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 577889999999988776631 22222111122 467889999999999998863
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.19 E-value=9.1e-09 Score=98.50 Aligned_cols=240 Identities=8% Similarity=0.007 Sum_probs=148.0
Q ss_pred EEe--cCCCeEEEEeecCCCCCeEEEEecCCC-CCceeEEeecC--C--CCcccceeEEEEeCCCCCEEEEEecC-----
Q 009203 281 AWH--PQGNSLFSAHTADSGDSQISVLNLNKT-KGRACVTFLDD--K--PHVKGIINSIIFLPWENPCFATGGSD----- 348 (540)
Q Consensus 281 ~~~--~~~~~l~s~~~~~~~d~~i~vwd~~~~-~~~~~~~~~~~--~--~~~~~~v~~~~~~p~~~~~l~s~~~d----- 348 (540)
.++ .++++|++. +..++.|.++|+.+. ...+...+++. . .........+...| ++ +++++..+
T Consensus 88 ~~~~~~~r~~l~v~---~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 88 NGKPNIERRFLIVP---GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEG 162 (462)
T ss_dssp TCCTTCCSCEEEEE---BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCS
T ss_pred ccCCCccCCEEEEc---cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCC
Confidence 346 788877765 378899999999754 22344444420 0 00012355678889 88 77776555
Q ss_pred -CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-------------------CCCeEEEEECCCCCe
Q 009203 349 -HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-------------------ADKRIIGFDAGVGRA 408 (540)
Q Consensus 349 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-------------------~dg~i~iwd~~~~~~ 408 (540)
|.|.++|..+.+.+.+...- ......-+.+.|+|+++.+++.. .+.+|.+||+.+++.
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~--~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEID--RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSB--CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred CCeEEEEECCCCeEEEEEccC--CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 78999999988753222210 11122345688899999888874 367999999998877
Q ss_pred eeeeccC---ccEEEE--eecCCCCCceEEEEE-c-----CCCeEEEEECCCCccee-eeeccc-----ccc-------C
Q 009203 409 DFKHQIE---SKCMSV--LPNPCDFNLFMVQTG-T-----PGRQLRLYDIRLRQTEI-HAFGWK-----QES-------S 464 (540)
Q Consensus 409 ~~~~~~~---~~~~~~--~~~~~~~~~~~l~~~-~-----~dg~v~i~d~~~~~~~~-~~~~~~-----~~~-------~ 464 (540)
+.....+ .....+ .++|++ .+++++ . .+++|.+|....+.-.. ..+... ..+ .
T Consensus 241 ~~tI~vg~~g~~P~~i~f~~~Pdg---~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 241 IHSLTLGEENRMALELRPLHDPTK---LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp EEEEESCTTEEEEEEEEECSSTTC---CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred eeEEecCCCCCccceeEeeECCCC---CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence 6665554 233344 458887 344443 3 56788877665432110 000000 000 0
Q ss_pred ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCC-CCcccccccccc--------------cceeEEEEcCCCCEEEE
Q 009203 465 ESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYS-ANKPSQSIRAHQ--------------KRVFKAVWHYSHPLLIS 528 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~-~~~~~~~~~~h~--------------~~i~~l~~s~~~~~l~s 528 (540)
+-...+..|.+|+||++|.++.. .+.|.+||+... ..+.+..+.... +.-..++++|||++|++
T Consensus 318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV 397 (462)
T 2ece_A 318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV 397 (462)
T ss_dssp EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence 01245788999999999887764 689999999642 123333333210 13588999999999888
Q ss_pred EE
Q 009203 529 IS 530 (540)
Q Consensus 529 ~~ 530 (540)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 87
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=1.6e-09 Score=112.90 Aligned_cols=275 Identities=10% Similarity=0.017 Sum_probs=164.3
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC--CCCCeEEEEecCCCCCc
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD--SGDSQISVLNLNKTKGR 313 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~--~~d~~i~vwd~~~~~~~ 313 (540)
+..|+.++.|+.|..+|..+++...++...... .....+.+.-.. .+..++++...+ +.++.|..||..+++..
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ---KGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTC---CSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc---CcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 346778888999999999999887776532010 000112111111 234555541000 02799999999998432
Q ss_pred eeEEeecCCC--------------------------CcccceeEEEEeCCCCCEEEEEecCC------------------
Q 009203 314 ACVTFLDDKP--------------------------HVKGIINSIIFLPWENPCFATGGSDH------------------ 349 (540)
Q Consensus 314 ~~~~~~~~~~--------------------------~~~~~v~~~~~~p~~~~~l~s~~~dg------------------ 349 (540)
.......... ........++++| ++.+++.++.++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeee
Confidence 2222211100 0001123578899 777888777654
Q ss_pred -cEEEEecCCCCCccccceeeccc----CCcceeEEEeccCC---CEEEEEeCCCeEEEEECCCCCeeeeeccCc-----
Q 009203 350 -AVVLWSERDAEDSWKPKALHRNL----HSSAVMGVAGMQQK---QIVLSAGADKRIIGFDAGVGRADFKHQIES----- 416 (540)
Q Consensus 350 -~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----- 416 (540)
.|..+|..+++..|..+...... ......-+....+| ..++.++.+|.++++|..+|+.+.......
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 59999999999876655322110 01122223333467 688999999999999999999876543221
Q ss_pred ------cE-------------------------EEEeecCCCCCceEEEEEcC---------------------------
Q 009203 417 ------KC-------------------------MSVLPNPCDFNLFMVQTGTP--------------------------- 438 (540)
Q Consensus 417 ------~~-------------------------~~~~~~~~~~~~~~l~~~~~--------------------------- 438 (540)
.. ..++++|+. .++++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~---~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT---GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT---TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC---CEEEEeChhcceeeecccccccccccccccccccc
Confidence 00 023455554 24444321
Q ss_pred ----------------CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc
Q 009203 439 ----------------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK 502 (540)
Q Consensus 439 ----------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~ 502 (540)
.|.|..||+.+++...... +..++.+..+..++..+++++.||.+++||..+ ++
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t--G~ 509 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT--GE 509 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT--CC
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecC--------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC--Cc
Confidence 2789999999887544321 122344445666888999999999999999998 77
Q ss_pred ccccccccc-cceeEEEEcCCCCEEEE
Q 009203 503 PSQSIRAHQ-KRVFKAVWHYSHPLLIS 528 (540)
Q Consensus 503 ~~~~~~~h~-~~i~~l~~s~~~~~l~s 528 (540)
.+..+.... ....-+.|..+|+.+++
T Consensus 510 ~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 510 KLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 777776332 23344667788864433
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.18 E-value=1.4e-09 Score=103.58 Aligned_cols=268 Identities=9% Similarity=-0.088 Sum_probs=160.1
Q ss_pred cEEEEEeCCc----eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec------CCCCCeEEEEe
Q 009203 237 QLFVTSALDG----VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA------DSGDSQISVLN 306 (540)
Q Consensus 237 ~~l~tg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~------~~~d~~i~vwd 306 (540)
..+++-..++ +|.++|..+.+.+.++... . .+ .++++||+++++++... |..++.|.+||
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG-------~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD 102 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-------F-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------T-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCC-------C-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 3444444444 8889999998877776532 2 23 69999999999988210 11378999999
Q ss_pred cCCCCCceeEEeecCC-CC---cccceeEEEEeCCCCCEEEEEec--CCcEEE--EecCCCCCccccceeecccCCccee
Q 009203 307 LNKTKGRACVTFLDDK-PH---VKGIINSIIFLPWENPCFATGGS--DHAVVL--WSERDAEDSWKPKALHRNLHSSAVM 378 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~~-~~---~~~~v~~~~~~p~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~ 378 (540)
+.+++ .+..+... .. .......++|+| ++++++++.. +..|.+ +|+.+ . ..+... + +
T Consensus 103 ~~T~~---vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t-v-----~~i~v~---~-~- 167 (368)
T 1mda_H 103 PVTFL---PIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD-D-----QLTKSA---S-C- 167 (368)
T ss_dssp TTTCC---EEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE-E-----EEEECS---S-C-
T ss_pred CCCCC---EEEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh-c-----eEEECC---C-c-
Confidence 99873 34443211 00 012356899999 9988888764 467888 99876 1 222111 1 1
Q ss_pred EEEeccCC-CEEEEEeCCCeEEEEECCC-----CCeeee----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 379 GVAGMQQK-QIVLSAGADKRIIGFDAGV-----GRADFK----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 379 ~l~~s~~~-~~l~~~~~dg~i~iwd~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
+.+.|+| ..+++.+.||.+.+.|+.+ ++.... ...+.... . .+++. .++++ +. +.|.+.|+.
T Consensus 168 -~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~--~~~~v-s~-~~V~viD~~ 239 (368)
T 1mda_H 168 -FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPG--MLVWA-VA-SSILQGDIP 239 (368)
T ss_dssp -CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTT--EEEEC-BS-SCCEEEECC
T ss_pred -eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCC--EEEEE-cC-CEEEEEECC
Confidence 1223443 3445566788888888876 333211 11111111 2 33331 33333 34 899999997
Q ss_pred CCcc-eeeeeccccc----cCccccCeEEEEEcCCCCEEEEEeC---------CCcEEEEeccCCCCcccccccccccce
Q 009203 449 LRQT-EIHAFGWKQE----SSESQSALINQSWSPDGLYITSGSA---------DPVIHLFDIRYSANKPSQSIRAHQKRV 514 (540)
Q Consensus 449 ~~~~-~~~~~~~~~~----~~~~~~~v~~~~~sp~g~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~h~~~i 514 (540)
+... ....+..... ..........++|+|||+.++.+.. ++.+.++|+.+ .+.+..+.... ..
T Consensus 240 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--~~vv~~i~vg~-~p 316 (368)
T 1mda_H 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--GQTSGPISNGH-DS 316 (368)
T ss_dssp SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--CCEEECCEEEE-EE
T ss_pred CCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC--CeEEEEEECCC-Cc
Confidence 5432 1111110000 0001111222689999998876533 23566999998 67777776544 58
Q ss_pred eEEEEcCCCC-EEEEEE-cCCcEEEEeC
Q 009203 515 FKAVWHYSHP-LLISIS-SDLNIGLHKI 540 (540)
Q Consensus 515 ~~l~~s~~~~-~l~s~~-~dg~v~iw~l 540 (540)
.+|+|+|||+ ++++.. .++.|.++|+
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 9999999997 566666 5999999985
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.17 E-value=7.9e-10 Score=105.71 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=140.0
Q ss_pred CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecC----CCCcccceeEEEEeCCCCCEEEEEec---
Q 009203 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD----KPHVKGIINSIIFLPWENPCFATGGS--- 347 (540)
Q Consensus 275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~s~~~--- 347 (540)
..+..++++++|+++++... ..++.++||.+.++ . +..+.. ...+-..+.++++++ ++.++++...
T Consensus 17 ~~p~~va~~~~g~~~v~~~~--~~~~~~~l~~~~~g---~-~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~ 89 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQ--FYQPEMQVAELTQD---G-LIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQS 89 (343)
T ss_dssp SCEEEEEECTTSCEEEEECG--GGCCSCSEEEEETT---E-EEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHH
T ss_pred CCcceEEECCCCCEEEEeCC--CCCCceEEEEECCC---C-eecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCc
Confidence 45788999999998888611 12343555655433 2 222211 112345699999999 7877666543
Q ss_pred --CCcEEEEecCCCCCccccceeec----ccCCcceeEEEeccCCCEE-EEEe---CCCeEEEEECCCCCeeeeeccCcc
Q 009203 348 --DHAVVLWSERDAEDSWKPKALHR----NLHSSAVMGVAGMQQKQIV-LSAG---ADKRIIGFDAGVGRADFKHQIESK 417 (540)
Q Consensus 348 --dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~ 417 (540)
++.|.+||+.+++.. ..+.. ..+...+..+++++++..+ ++.. .++.|.+||+.+++..........
T Consensus 90 ~~~~~i~~~d~~tg~~~---~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 90 KSVPKLVAWDTLNNQLS---RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp TSCCEEEEEETTTTEEE---EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CCCCeEEEEECCCCeEE---EEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 578999999987631 22211 1133457899999865454 5544 578999999988876443321100
Q ss_pred --EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-cEEEE
Q 009203 418 --CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-VIHLF 494 (540)
Q Consensus 418 --~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-~i~iw 494 (540)
.....+.+++ ..+.+.+.++.++.|. ..+..++|+|+|+.|+.+..++ .|+.+
T Consensus 167 ~~~~~~~~~~~g---~~~~~~~~~g~~~~~~---------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 167 IAPEDIDLVIDG---VPVQIGQPDGTVIRPH---------------------LGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp TSCCSCCCEETT---EECBEECTTSCEECCC---------------------CCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred ccccccceeECC---EEEEeccCCCceecee---------------------cccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 0001122222 3444555566654442 1367899999999888887666 44444
Q ss_pred eccCCC-C-----cccccc--cccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 495 DIRYSA-N-----KPSQSI--RAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 495 d~~~~~-~-----~~~~~~--~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+..... . +....+ .++.+....++++++|.++++...++.|.+||.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 432100 0 011111 134445678999999999999989999999973
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=3.3e-09 Score=110.78 Aligned_cols=291 Identities=9% Similarity=0.002 Sum_probs=171.0
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCC-CCCC-CCc-eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-PKHR-RWP-EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR 313 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~h~-~~V-~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~ 313 (540)
..|++++.++.|.-+|..+++.+.++........ .... ..+ ..++. ++..|+++ +.|+.|..+|..+++..
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~----~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVG----VLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEE----CTTSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEE----ccCCEEEEEECCCCCEe
Confidence 3566667788999999999887776643211000 0000 001 12233 35678887 88999999999998432
Q ss_pred eeEEeecCCCCccccee-EEEEeCCCCCEEEEEe------cCCcEEEEecCCCCCccccceeecc---------------
Q 009203 314 ACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGG------SDHAVVLWSERDAEDSWKPKALHRN--------------- 371 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~--------------- 371 (540)
........ ......+. +..+. ++ .++.++ .+|.|+.||..+++.+|+.......
T Consensus 145 W~~~~~~~-~~~~~~~~~sP~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 220 (689)
T 1yiq_A 145 WSVDTRAD-HKRSYTITGAPRVV--NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAK 220 (689)
T ss_dssp EEEECCSC-TTSCCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHT
T ss_pred eeecCcCC-CCCCccccCCcEEE--CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccc
Confidence 22222100 00001111 11121 34 444443 3689999999999987765432100
Q ss_pred -----------cCCcceeEEEeccCCCEEEEEeCCCe-------------------EEEEECCCCCeeeeeccCc-----
Q 009203 372 -----------LHSSAVMGVAGMQQKQIVLSAGADKR-------------------IIGFDAGVGRADFKHQIES----- 416 (540)
Q Consensus 372 -----------~~~~~v~~l~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~----- 416 (540)
++......++++|++.+++.++.++. |..||.++|+.+..++...
T Consensus 221 ~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd 300 (689)
T 1yiq_A 221 TWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD 300 (689)
T ss_dssp TCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC
T ss_pred ccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccc
Confidence 01111236788898999999988764 9999999999877654321
Q ss_pred -----cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec----cccc-----------------cCccc---
Q 009203 417 -----KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG----WKQE-----------------SSESQ--- 467 (540)
Q Consensus 417 -----~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~-----------------~~~~~--- 467 (540)
.........++.....++.++.+|.++++|..+++......- +... .....
T Consensus 301 ~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~ 380 (689)
T 1yiq_A 301 YTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNL 380 (689)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEE
T ss_pred ccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeE
Confidence 111111111221113788899999999999999886421100 0000 00000
Q ss_pred --------cCeEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEE
Q 009203 468 --------SALINQSWSPDGLYITSGSA---------------------------------------------DPVIHLF 494 (540)
Q Consensus 468 --------~~v~~~~~sp~g~~l~sg~~---------------------------------------------dg~i~iw 494 (540)
..-..++|+|+..++++... +|.|+.|
T Consensus 381 ~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~ 460 (689)
T 1yiq_A 381 VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAW 460 (689)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred eCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEE
Confidence 01123789998887776532 3779999
Q ss_pred eccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 495 DIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 495 d~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
|+.+ ++.+-.+..+. ++....+...+.+++.++.||.|+.||.
T Consensus 461 D~~t--G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 461 DPVK--QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp ETTT--TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ECCC--CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 9987 66665555433 3444466667889999999999999984
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=3.2e-09 Score=110.96 Aligned_cols=276 Identities=12% Similarity=0.051 Sum_probs=162.4
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeec--CCCCCeEEEEecCCCCC
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTA--DSGDSQISVLNLNKTKG 312 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~--~~~d~~i~vwd~~~~~~ 312 (540)
+..|+.++.|+.|..+|..+++....+...... .....+.+ ..+ .++ .++++... .+.++.|..||..+++.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADH---KRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCT---TSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCC---CCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 346788889999999999999987766542000 00011111 111 144 44444100 01378999999999854
Q ss_pred ceeEEeecCCCC-------------------------cccceeEEEEeCCCCCEEEEEecCCc-----------------
Q 009203 313 RACVTFLDDKPH-------------------------VKGIINSIIFLPWENPCFATGGSDHA----------------- 350 (540)
Q Consensus 313 ~~~~~~~~~~~~-------------------------~~~~v~~~~~~p~~~~~l~s~~~dg~----------------- 350 (540)
..........+. .......++++| +..+++.++.++.
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~ 274 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFL 274 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 333322111100 001113678888 7788888887763
Q ss_pred --EEEEecCCCCCccccceeeccc----CCcceeEEEeccCCC---EEEEEeCCCeEEEEECCCCCeeeeeccCc--c--
Q 009203 351 --VVLWSERDAEDSWKPKALHRNL----HSSAVMGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRADFKHQIES--K-- 417 (540)
Q Consensus 351 --i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~-- 417 (540)
|..||..+++..|..+...... ....+.......+|. .++.++.+|.++++|.++|+.+....... .
T Consensus 275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 354 (689)
T 1yiq_A 275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK 354 (689)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence 9999999999876554321110 111222222223565 78889999999999999999864322111 0
Q ss_pred ------------------------------------EEEEeecCCCCCceEEEEEc------------------------
Q 009203 418 ------------------------------------CMSVLPNPCDFNLFMVQTGT------------------------ 437 (540)
Q Consensus 418 ------------------------------------~~~~~~~~~~~~~~~l~~~~------------------------ 437 (540)
-..++++|.. .++++..
T Consensus 355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~---~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT---GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT---TEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC---CEEEEeccccceeeeeccccccccccccccc
Confidence 0013445543 2333321
Q ss_pred ---------------------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203 438 ---------------------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI 496 (540)
Q Consensus 438 ---------------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~ 496 (540)
.+|.|..||+.+++...... +..++..-.+...+.++++|+.||.|+.||.
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--------~~~~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP--------YVTIFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE--------ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc--------CCCCccCccceECCCEEEEECCCCcEEEEEC
Confidence 14789999999988544321 1122233355567889999999999999999
Q ss_pred cCCCCccccccccccc-ceeEEEEcCCCC-EEEEEE
Q 009203 497 RYSANKPSQSIRAHQK-RVFKAVWHYSHP-LLISIS 530 (540)
Q Consensus 497 ~~~~~~~~~~~~~h~~-~i~~l~~s~~~~-~l~s~~ 530 (540)
.+ ++.+..+....+ ...-+.|..+|+ |+++.+
T Consensus 504 ~t--G~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 504 DT--GEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp TT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CC--CccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 98 777777664432 224467778886 444443
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=3e-09 Score=110.90 Aligned_cols=289 Identities=8% Similarity=-0.013 Sum_probs=171.4
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCC----CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP----KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR 313 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~----~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~ 313 (540)
.|+.++.++.|.-+|..+++.+.++......... .+ .....+++ ++..|+++ +.|+.|..+|..+++..
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~~a~--~~~~v~v~----~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD-VVNRGVAL--WKGKVYVG----AWDGRLIALDAATGKEV 151 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC-SCCCCCEE--ETTEEEEE----CTTSEEEEEETTTCCEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccc-CCCCCceE--ECCEEEEE----cCCCEEEEEECCCCCEE
Confidence 4555666788888888888876665432110000 00 00122333 35678887 88999999999998432
Q ss_pred eeEEeecCCCCccccee-EEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeecc---------------
Q 009203 314 ACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRN--------------- 371 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~--------------- 371 (540)
........ ......+. ..... + ..++.++. ++.|+.||..+++.+|+.......
T Consensus 152 W~~~~~~~-~~~~~~~~~~p~v~--~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~ 227 (677)
T 1kb0_A 152 WHQNTFEG-QKGSLTITGAPRVF--K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR 227 (677)
T ss_dssp EEEETTTT-CCSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred eeecCCcC-cCcCcccccCcEEE--C-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence 22221100 00001111 11121 3 34555543 689999999999987655432111
Q ss_pred ------------cCCcceeEEEeccCCCEEEEEeCCC-------------------eEEEEECCCCCeeeeeccCc----
Q 009203 372 ------------LHSSAVMGVAGMQQKQIVLSAGADK-------------------RIIGFDAGVGRADFKHQIES---- 416 (540)
Q Consensus 372 ------------~~~~~v~~l~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~---- 416 (540)
+.......++++|++..++.++.++ .|..+|.++|+.+..++...
T Consensus 228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w 307 (677)
T 1kb0_A 228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW 307 (677)
T ss_dssp TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence 1111224678889999999888764 59999999999876654321
Q ss_pred ------cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc----cCccccC-----------------
Q 009203 417 ------KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE----SSESQSA----------------- 469 (540)
Q Consensus 417 ------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~----~~~~~~~----------------- 469 (540)
...-+....++.....++.++.+|.|+++|..+++......-.... +.....+
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P 387 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence 1111111112211147888999999999999998864322100000 0000000
Q ss_pred -------eEEEEEcCCCCEEEEEeC-------------------------------------------CCcEEEEeccCC
Q 009203 470 -------LINQSWSPDGLYITSGSA-------------------------------------------DPVIHLFDIRYS 499 (540)
Q Consensus 470 -------v~~~~~sp~g~~l~sg~~-------------------------------------------dg~i~iwd~~~~ 499 (540)
-..++|+|++.++++... .|.|..||+.+
T Consensus 388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t- 466 (677)
T 1kb0_A 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA- 466 (677)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-
T ss_pred CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-
Confidence 025789998888877543 27799999987
Q ss_pred CCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 500 ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 500 ~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
++.+-.+. +..+++...+..++.+++.++.||.+++||.
T Consensus 467 -G~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 467 -QKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp -TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred -CcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 56555554 3344556667778888999999999999984
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=4.7e-08 Score=94.71 Aligned_cols=266 Identities=8% Similarity=-0.007 Sum_probs=158.0
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
+..++.++.++.|..+|..+++.......... ........ +..++.+ +.++.|..+|..+++.
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--------~~~~p~~~--~~~v~v~----~~~g~l~~~d~~tG~~--- 165 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--------ALSRPVVS--DGLVLIH----TSNGQLQALNEADGAV--- 165 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSC--------CCSCCEEE--TTEEEEE----CTTSEEEEEETTTCCE---
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--------eEcCCEEE--CCEEEEE----cCCCeEEEEECCCCcE---
Confidence 34677788899999999999887665532211 11112222 4467777 8899999999988733
Q ss_pred EEeecCCCCcc--cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC--cceeEEEecc--CCCEE
Q 009203 316 VTFLDDKPHVK--GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS--SAVMGVAGMQ--QKQIV 389 (540)
Q Consensus 316 ~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~--~~~~l 389 (540)
+-......... ......... +..++.++.++.|..+|..+++..|........+.. ..+..+...| .+..+
T Consensus 166 ~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v 242 (376)
T 3q7m_A 166 KWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVV 242 (376)
T ss_dssp EEEEECCC-----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEE
T ss_pred EEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEE
Confidence 22222100000 000122222 346777888999999999999865543321100000 0000011111 35677
Q ss_pred EEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203 390 LSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA 469 (540)
Q Consensus 390 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 469 (540)
+.++.++.+..+|..+++.+....... ...+.... ..++.++.++.|..+|..+++....... . ....
T Consensus 243 ~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~-----~~l~~~~~~g~l~~~d~~tG~~~w~~~~----~--~~~~ 310 (376)
T 3q7m_A 243 FALAYNGNLTALDLRSGQIMWKRELGS-VNDFIVDG-----NRIYLVDQNDRVMALTIDGGVTLWTQSD----L--LHRL 310 (376)
T ss_dssp EEECTTSCEEEEETTTCCEEEEECCCC-EEEEEEET-----TEEEEEETTCCEEEEETTTCCEEEEECT----T--TTSC
T ss_pred EEEecCcEEEEEECCCCcEEeeccCCC-CCCceEEC-----CEEEEEcCCCeEEEEECCCCcEEEeecc----c--CCCc
Confidence 888889999999999999876655433 23333332 2677777899999999998875433210 1 0111
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE-EEEcCCCCEEEEEEcCCcEEEEe
Q 009203 470 LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK-AVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 470 v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
+..... .+..|+.++.+|.|++||..+ ++.+.........+.. ... .+..|+.++.||.|..|+
T Consensus 311 ~~~~~~--~~~~l~v~~~~g~l~~~d~~t--G~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 311 LTSPVL--YNGNLVVGDSEGYLHWINVED--GRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCCCEE--ETTEEEEECTTSEEEEEETTT--CCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ccCCEE--ECCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 222222 356788888999999999988 5655555432233322 222 245788888999999987
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.13 E-value=3e-09 Score=101.41 Aligned_cols=255 Identities=9% Similarity=-0.074 Sum_probs=152.9
Q ss_pred EEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203 228 SLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS 297 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~ 297 (540)
.+.++|| +++++++. .++.|.+||..+.+...++....... .........++|+|||++|+++ .
T Consensus 69 ~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-~~~g~~P~~ia~SpDGk~lyVa----n 142 (368)
T 1mda_H 69 LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FSVGPRVHIIGNCASSACLLFF----L 142 (368)
T ss_dssp EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-CCBSCCTTSEEECTTSSCEEEE----E
T ss_pred ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-cccCCCcceEEEcCCCCEEEEE----c
Confidence 7999997 66666654 36899999999998877774320000 0001235679999999999987 4
Q ss_pred C--CCeEEE--EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC-----CCCcccc-ce
Q 009203 298 G--DSQISV--LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD-----AEDSWKP-KA 367 (540)
Q Consensus 298 ~--d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~-~~ 367 (540)
. +..|.+ +|..+ +..+.. .+ . +.+.|.....+++.+.||.+.+.|+.+ ++..... ..
T Consensus 143 ~~~~~~v~V~~iD~~t------v~~i~v----~~-~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~ 209 (368)
T 1mda_H 143 FGSSAAAGLSVPGASD------DQLTKS----AS-C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209 (368)
T ss_dssp CSSSCEEEEEETTTEE------EEEEEC----SS-C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred cCCCCeEEEEEEchhh------ceEEEC----CC-c--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence 3 467888 88875 222221 01 1 112342344556667788888888876 3321100 00
Q ss_pred eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--eeeeccC-----------ccEEEEeecCCCCCceEEE
Q 009203 368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--DFKHQIE-----------SKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~l~ 434 (540)
+. ....+. . .+++..++..+. +.+.+.|+..+.. +...... .....+.++|++. ++++
T Consensus 210 i~--vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--~lyV 280 (368)
T 1mda_H 210 QN--CSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--GIMI 280 (368)
T ss_dssp SC--BCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--EEEE
T ss_pred ee--CCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--EEEE
Confidence 10 112232 3 566666666666 8999999975432 1111110 0011156777763 2333
Q ss_pred EEc---C-----CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE-EEEEe-CCCcEEEEeccCCCCccc
Q 009203 435 TGT---P-----GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY-ITSGS-ADPVIHLFDIRYSANKPS 504 (540)
Q Consensus 435 ~~~---~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~sg~-~dg~i~iwd~~~~~~~~~ 504 (540)
+.. . ++.+.++|+.+.+..... .. .....+++|+|||++ +++.. .++.|.++|+.+ .+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i-------~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t--~kvv 350 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPI-------SN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS--DQDQ 350 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECC-------EE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS--CEEE
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEE-------EC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC--CcEE
Confidence 322 2 245669999988754322 11 125889999999984 55665 589999999998 7888
Q ss_pred ccccccccceeEEEEcC
Q 009203 505 QSIRAHQKRVFKAVWHY 521 (540)
Q Consensus 505 ~~~~~h~~~i~~l~~s~ 521 (540)
.++.... ..+.+++.+
T Consensus 351 ~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 351 SSVELDK-GPESLSVQN 366 (368)
T ss_dssp EECCCCS-CCCEEECCC
T ss_pred EEEECCC-CCCEEEeec
Confidence 8877544 345666643
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.11 E-value=4.4e-08 Score=94.87 Aligned_cols=271 Identities=12% Similarity=0.020 Sum_probs=155.2
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC-CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH-RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
..|++++.++.|..+|..+++................ ...+.+ ....++..++++ +.++.|..+|..+++.
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~----~~~g~l~a~d~~tG~~--- 125 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIG----SEKAQVYALNTSDGTV--- 125 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEE----ETTSEEEEEETTTCCE---
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEE----cCCCEEEEEECCCCCE---
Confidence 4566777788999999998887655543211000000 112222 222245567777 7889999999998843
Q ss_pred EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203 316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD 395 (540)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 395 (540)
+-..... ......... .+..++.++.++.|..+|..+++..|.................... +..+++++.+
T Consensus 126 ~W~~~~~---~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~ 197 (376)
T 3q7m_A 126 AWQTKVA---GEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDN 197 (376)
T ss_dssp EEEEECS---SCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTT
T ss_pred EEEEeCC---CceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCC
Confidence 2222211 011111222 2347788888999999999999865543321100000000112222 4567888889
Q ss_pred CeEEEEECCCCCeeeeeccCccEEE--------EeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203 396 KRIIGFDAGVGRADFKHQIESKCMS--------VLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ 467 (540)
Q Consensus 396 g~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 467 (540)
+.|..+|..+++.+........... +...|.-.. ..++.++.++.+..+|..+++...... .
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG~~~w~~~---------~ 267 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSGQIMWKRE---------L 267 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEEEEETTTCCEEEEEC---------C
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCCcEEeecc---------C
Confidence 9999999999998766543321100 111111001 267777889999999999887543221 1
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-ccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 468 SALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 468 ~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.....+.. ++..|+.++.++.|..+|..+ ++.+.... .....+..... .+..|+.++.+|.|.++|
T Consensus 268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 268 GSVNDFIV--DGNRIYLVDQNDRVMALTIDG--GVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp CCEEEEEE--ETTEEEEEETTCCEEEEETTT--CCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred CCCCCceE--ECCEEEEEcCCCeEEEEECCC--CcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEE
Confidence 12334444 466788888899999999987 45443333 11122222333 245788888889888887
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.05 E-value=1.5e-08 Score=100.49 Aligned_cols=229 Identities=13% Similarity=0.138 Sum_probs=148.4
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE-e-CCCCCEEEEEe----------------
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF-L-PWENPCFATGG---------------- 346 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-p~~~~~l~s~~---------------- 346 (540)
||++|+.. ...++.|.+.|+.+. ++...+.. +. ...+..+++ . | ++.++++++
T Consensus 100 DG~~lfVn---d~~~~rVavIdl~t~---~~~~ii~i-p~-g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 DGRFLFMN---DKANTRVARVRCDVM---KCDAILEI-PN-AKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEE---ETTTTEEEEEETTTT---EEEEEEEC-SS-CCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCEEEEE---cCCCCEEEEEECCCc---eEeeEEeC-CC-CCCCcceeeeecC-CCcEEEEecccccccCCCCcccccc
Confidence 88888776 256778999999986 44543322 11 234788888 4 8 888888774
Q ss_pred --cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC----------------------------
Q 009203 347 --SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK---------------------------- 396 (540)
Q Consensus 347 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg---------------------------- 396 (540)
.++.+.++|..+.+..+++.. .+....++++|+|+++++.+.+.
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~V------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLV------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEE------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred cccCceEEEEECCCCeEEEEEEe------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 345799999998765333221 12356678999999998888543
Q ss_pred ----------eEEEEECCC--CCe-eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee----e-eec
Q 009203 397 ----------RIIGFDAGV--GRA-DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI----H-AFG 458 (540)
Q Consensus 397 ----------~i~iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~----~-~~~ 458 (540)
.|.+.|.++ ++. +..........++.++|++. ..++++..+.+|.++|+.+..... . ...
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk--~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKK--HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSS--EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCC--EEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 377778776 444 34455555667788899884 356667788999999998642100 0 000
Q ss_pred cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC--------CCccccccccccc-----ceeEEEEcCCCCE
Q 009203 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS--------ANKPSQSIRAHQK-----RVFKAVWHYSHPL 525 (540)
Q Consensus 459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~--------~~~~~~~~~~h~~-----~i~~l~~s~~~~~ 525 (540)
..... .-......++|+|+|...++..-|+.|.+||+... ....+..+..|-. .-.++.++|||++
T Consensus 323 v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 323 VVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW 401 (595)
T ss_dssp EEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred eEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence 00011 12346889999999954556677999999999861 1234444444432 2233456899999
Q ss_pred EEEEEc
Q 009203 526 LISISS 531 (540)
Q Consensus 526 l~s~~~ 531 (540)
|+++..
T Consensus 402 l~~~Nk 407 (595)
T 1fwx_A 402 LVCLSK 407 (595)
T ss_dssp EEEEES
T ss_pred EEEcCC
Confidence 998853
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.04 E-value=1.6e-10 Score=111.60 Aligned_cols=188 Identities=11% Similarity=0.047 Sum_probs=102.4
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~ 315 (540)
+.++++++.||.|..||..+++...++.. ..+.+..+..++..++++ +.|+.|+.||..+++.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------~~~~s~p~~~~g~~~v~~----s~dg~l~a~d~~tG~~--- 71 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------DPVLQVPTHVEEPAFLPD----PNDGSLYTLGSKNNEG--- 71 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC----------CCSCCCC-----CCEEEC----TTTCCEEEC-----CC---
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC----------CCceecceEcCCCEEEEe----CCCCEEEEEECCCCce---
Confidence 56788999999999999999988776642 234455566778788887 8999999999988743
Q ss_pred EEeecCCCCccccee-EEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203 316 VTFLDDKPHVKGIIN-SIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA 394 (540)
Q Consensus 316 ~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 394 (540)
+..+... ....+. +..+. .+..+++|+.|+.|+.||..+++..|.... +. ...++|++..+++++.
T Consensus 72 ~w~~~~~--~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-----~~----~~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 72 LTKLPFT--IPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSS-----AF----ADSLSPSTSLLYLGRT 138 (369)
T ss_dssp SEECSCC--HHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------------EEEEEE
T ss_pred eeeeecc--CccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecC-----CC----cccccccCCEEEEEec
Confidence 2222210 011111 11111 334677788899999999999987654432 11 2345668889999999
Q ss_pred CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 395 DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 395 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
|+.|+.||.++|+.+....... .....+.++......+++++.+|.|..||..+++...
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred CCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 9999999999998765543221 1112222211000256678889999999999887543
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=6.6e-08 Score=92.62 Aligned_cols=243 Identities=11% Similarity=0.009 Sum_probs=141.3
Q ss_pred cCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc---cC-CCCCCCCceeEEEecCCCeEEEEeec--CCCCCeEEEEe
Q 009203 233 PVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD---CL-SPKHRRWPEDIAWHPQGNSLFSAHTA--DSGDSQISVLN 306 (540)
Q Consensus 233 pd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~---~~-~~~h~~~V~~~~~~~~~~~l~s~~~~--~~~d~~i~vwd 306 (540)
++...++++|..+++|.|+|+.+.....++....+ .. ..+ ......+...|+| +++++... |...+.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 66455667777889999999976532222322221 00 001 0123467788999 66665111 22347899999
Q ss_pred cCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-------------------cCCcEEEEecCCCCCccccce
Q 009203 307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-------------------SDHAVVLWSERDAEDSWKPKA 367 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~ 367 (540)
..+. +.+..+.........-..+.|+| +++.+++.. .+.+|.+||+.+++. ...
T Consensus 171 ~~T~---~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~---~~t 243 (462)
T 2ece_A 171 HYSF---EPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR---IHS 243 (462)
T ss_dssp TTTC---CEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE---EEE
T ss_pred CCCC---eEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE---eeE
Confidence 9986 44555543211223345688899 888888874 368899999998754 223
Q ss_pred eecccCCcceeEEEe--ccCCCEEEEEeC------CCeEEEEECCCCCee--eee--c-----------------cCccE
Q 009203 368 LHRNLHSSAVMGVAG--MQQKQIVLSAGA------DKRIIGFDAGVGRAD--FKH--Q-----------------IESKC 418 (540)
Q Consensus 368 ~~~~~~~~~v~~l~~--s~~~~~l~~~~~------dg~i~iwd~~~~~~~--~~~--~-----------------~~~~~ 418 (540)
+...........+.| +|+++++++++. +++|.+|....+... ... . .....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 322112233445555 999999888774 567877665443221 000 0 02345
Q ss_pred EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc--eeeeecccccc--------CccccCeEEEEEcCCCCEEEEEe
Q 009203 419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT--EIHAFGWKQES--------SESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~--------~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
..+..++++. .+.++.-..+.|.+||+..... ....+..-..+ ..-.+....++++|||++|+++.
T Consensus 324 a~I~lS~DGr--fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 324 TDIDISLDDK--FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSC--EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eEEEECCCCC--EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 6778888873 2345555578999999964321 11111100000 00012468899999999999887
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=2.7e-10 Score=109.99 Aligned_cols=204 Identities=13% Similarity=0.054 Sum_probs=107.2
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK 364 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 364 (540)
++..++++ +.|+.|..||..+++. +-.+.. +.+.+..+.. ++..+++++.||.|+.||..+++..|.
T Consensus 8 ~~~~v~~g----s~dg~v~a~d~~tG~~---~W~~~~-----~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 8 PETLLFVS----TLDGSLHAVSKRTGSI---KWTLKE-----DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTK 74 (369)
T ss_dssp CTTEEEEE----ETTSEEEEEETTTCCE---EEEEEC-----CCSCCCC------CCEEECTTTCCEEEC-----CCSEE
T ss_pred eCCEEEEE----cCCCEEEEEECCCCCE---EEEecC-----CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeee
Confidence 46788888 8999999999998843 322222 1233444445 677788888999999999998886544
Q ss_pred cceeecccCCccee-EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203 365 PKALHRNLHSSAVM-GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLR 443 (540)
Q Consensus 365 ~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 443 (540)
...-. ...+. +..+. ++..+++++.++.|+.||..+|+.+........ ..++|.+ ..+++++.++.|+
T Consensus 75 ~~~~~----~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~---~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 75 LPFTI----PELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPST---SLLYLGRTEYTIT 143 (369)
T ss_dssp CSCCH----HHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEE
T ss_pred eeccC----ccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccC---CEEEEEecCCEEE
Confidence 32110 01111 11111 345677888899999999999998766544331 2334433 5788888899999
Q ss_pred EEECCCCcceeeeeccccccCccccCeEEEEEcCCC---CEEEEEeCCCcEEEEeccCCCCccccccccccccee-EEEE
Q 009203 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG---LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF-KAVW 519 (540)
Q Consensus 444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~-~l~~ 519 (540)
.||..+++...... .. .....+++.++ ..+++++.||.|+.||..+ ++.+-.+.. ..++. ...+
T Consensus 144 a~d~~tG~~~W~~~-----~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t--G~~~W~~~~-~~pv~~~~~~ 211 (369)
T 2hz6_A 144 MYDTKTRELRWNAT-----YF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES--GDVLWIQNY-ASPVVAFYVW 211 (369)
T ss_dssp CCCSSSSSCCCEEE-----EE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT--CCEEEEEEC-SSCEEEEEEC
T ss_pred EEECCCCCEEEeEe-----cc----cccCccccCCccccceEEEECCCCEEEEEECCC--CcEEEEecC-CCceEEEEEe
Confidence 99999887543221 00 11222333332 5677788999999999987 555554442 33443 3445
Q ss_pred cCCCC
Q 009203 520 HYSHP 524 (540)
Q Consensus 520 s~~~~ 524 (540)
+++|.
T Consensus 212 ~~dg~ 216 (369)
T 2hz6_A 212 QREGL 216 (369)
T ss_dssp TTSSC
T ss_pred cCCce
Confidence 56664
No 236
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.95 E-value=4.8e-07 Score=85.45 Aligned_cols=241 Identities=11% Similarity=0.052 Sum_probs=147.8
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC-------C-------CcccceeEEEEeCCCCCEE
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK-------P-------HVKGIINSIIFLPWENPCF 342 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~-------~~~~~v~~~~~~p~~~~~l 342 (540)
..+++|.++|++++++ ..++.|..||..++.. ......... . .....+.++++.+ +...|
T Consensus 21 p~~i~~d~~g~~l~v~----~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l 94 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTS----VQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQL 94 (322)
T ss_dssp CCCEECCTTCSSEEEE----CTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEE
T ss_pred ceEEEEcCCCCEEEEE----cCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcC-CCCcE
Confidence 4679999999878888 8899999999875421 111110000 0 0013478999987 33455
Q ss_pred EEEecCCcEEEEecCCCCCccccceeec--c-cCCcceeEEEecc-CCCEEEEEeC-----------------CCeEEEE
Q 009203 343 ATGGSDHAVVLWSERDAEDSWKPKALHR--N-LHSSAVMGVAGMQ-QKQIVLSAGA-----------------DKRIIGF 401 (540)
Q Consensus 343 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~-~~~~~v~~l~~s~-~~~~l~~~~~-----------------dg~i~iw 401 (540)
+.+...+.|..+|..++.. ..+.. . ........+++.+ +|++.++... ++.|..|
T Consensus 95 ~v~d~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA----TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EEEETTTEEEEECTTCEEC----EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred EEEECCCCEEEEeCCCCEE----EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 5555556688888876542 12211 1 1123578899999 8987776532 3679999
Q ss_pred ECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc-eeeeeccccccCccccCeEEEEEcCCCC
Q 009203 402 DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT-EIHAFGWKQESSESQSALINQSWSPDGL 480 (540)
Q Consensus 402 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 480 (540)
|..+++.............++++|++. .++++-...+.|.+|++..... ....+. .. .+ ...++++++|+
T Consensus 171 d~~~~~~~~~~~~~~~p~gia~~~dg~--~lyv~d~~~~~I~~~~~~~~~~~~~~~~~---~~---~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 171 DPSTKETTLLLKELHVPGGAEVSADSS--FVLVAEFLSHQIVKYWLEGPKKGTAEVLV---KI---PN-PGNIKRNADGH 241 (322)
T ss_dssp ETTTTEEEEEEEEESCCCEEEECTTSS--EEEEEEGGGTEEEEEESSSTTTTCEEEEE---EC---SS-EEEEEECTTSC
T ss_pred eCCCCEEEEeccCCccCcceEECCCCC--EEEEEeCCCCeEEEEECCCCcCCccceEE---eC---CC-CCCeEECCCCC
Confidence 987765433222223445678888762 2445556678999999875321 111111 11 12 78899999998
Q ss_pred EEEEEeC----------CCcEEEEeccCCCCccccccccc----ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 481 YITSGSA----------DPVIHLFDIRYSANKPSQSIRAH----QKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 481 ~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~h----~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+.++... .+.|..+|.. ++.+..+... ...++++++ .++.++++...++.|.++++
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF---GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT---SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred EEEEecCcccccccCCCccEEEEECCC---CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 7766544 4667778765 5555555432 235677777 46666666667788888764
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.94 E-value=3.3e-06 Score=77.20 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=138.1
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
..+.+++|+|+++.++++-..++.|..++...... ..+. .........+++++++..|+.+ +...+.|.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~-------~~~~~~p~~ia~d~~~~~lyv~---d~~~~~I~ 104 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII-------RQDLGSPEGIALDHLGRTIFWT---DSQLDRIE 104 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE-------CTTCCCEEEEEEETTTTEEEEE---ETTTTEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEE-------ECCCCCccEEEEEecCCeEEEE---ECCCCEEE
Confidence 45789999996566777777788999999876542 2221 1112356899999976655554 16678999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
+++++... . ...... .......++++| ++..|+.+.. .+.|..+++..... ..+. .........+
T Consensus 105 ~~~~~g~~-~--~~~~~~---~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~~----~~~~-~~~~~~P~gi 172 (267)
T 1npe_A 105 VAKMDGTQ-R--RVLFDT---GLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTNR----RILA-QDNLGLPNGL 172 (267)
T ss_dssp EEETTSCS-C--EEEECS---SCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCCC----EEEE-CTTCSCEEEE
T ss_pred EEEcCCCC-E--EEEEEC---CCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCCc----EEEE-ECCCCCCcEE
Confidence 99987431 1 122221 113478999999 5555544443 36888888865431 2221 1123467899
Q ss_pred EeccCCCEEEEE-eCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203 381 AGMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459 (540)
Q Consensus 381 ~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 459 (540)
++++++..|+.+ ...+.|.++|+.................++... + .++++....+.|.++|..+++......
T Consensus 173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~-~---~lyva~~~~~~v~~~d~~~g~~~~~i~-- 246 (267)
T 1npe_A 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYG-K---NLYYTDWKTNSVIAMDLAISKEMDTFH-- 246 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEET-T---EEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred EEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeC-C---EEEEEECCCCeEEEEeCCCCCceEEEc--
Confidence 999987666554 456799999997544322222233445555542 2 466666677899999998776433211
Q ss_pred ccccCccccCeEEEEEcCCCC
Q 009203 460 KQESSESQSALINQSWSPDGL 480 (540)
Q Consensus 460 ~~~~~~~~~~v~~~~~sp~g~ 480 (540)
.+.......+++.|++.
T Consensus 247 ----~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 ----PHKQTRLYGITIALSQC 263 (267)
T ss_dssp ----CSSCCCCCCEEEECSCC
T ss_pred ----cccccccceeeecCccC
Confidence 11122366777877754
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=4e-06 Score=76.64 Aligned_cols=252 Identities=8% Similarity=0.007 Sum_probs=151.2
Q ss_pred EEEEEeCCceEEEEEcCCCCCcc----eeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGA----SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR 313 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~----~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~ 313 (540)
+|+.+.. +.|+.+++....... .+... ....+.+++|++++..|+.+ +..++.|..+++....
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~-------~~~~~~gi~~d~~~~~ly~~---d~~~~~I~~~~~~g~~-- 69 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-------PAKVIIGLAFDCVDKVVYWT---DISEPSIGRASLHGGE-- 69 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-------EEEEEEEEEEETTTTEEEEE---ETTTTEEEEEESSSCC--
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecC-------CCCcEEEEEEecCCCEEEEE---ECCCCEEEEEecCCCC--
Confidence 4444443 478888887543210 11100 01235789999977666554 1678899999998542
Q ss_pred eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe
Q 009203 314 ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG 393 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 393 (540)
....... ......++++++..+.++++....+.|.++++..... ..+.. ........++++|++..|+.+.
T Consensus 70 -~~~~~~~---~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~-~~~~~P~~i~vd~~~g~lyv~~ 140 (267)
T 1npe_A 70 -PTTIIRQ---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR----RVLFD-TGLVNPRGIVTDPVRGNLYWTD 140 (267)
T ss_dssp -CEEEECT---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEC-SSCSSEEEEEEETTTTEEEEEE
T ss_pred -cEEEEEC---CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE----EEEEE-CCCCCccEEEEeeCCCEEEEEE
Confidence 1222221 1235789999983345555556678899999875432 22211 1224578999999766665555
Q ss_pred C---CCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203 394 A---DKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA 469 (540)
Q Consensus 394 ~---dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 469 (540)
. .+.|..+++......... ........+++++++. .++++....+.|.++|+....... .. .. ...
T Consensus 141 ~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~--~lyv~d~~~~~I~~~~~~g~~~~~-~~------~~-~~~ 210 (267)
T 1npe_A 141 WNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS--QLCWVDAGTHRAECLNPAQPGRRK-VL------EG-LQY 210 (267)
T ss_dssp CCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTEEEEEE-EE------EC-CCS
T ss_pred CCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCC--EEEEEECCCCEEEEEecCCCceEE-Ee------cC-CCC
Confidence 4 368888988643321111 2234577888888642 456667777899999997543211 11 11 123
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccc-cceeEEEEcCCCC
Q 009203 470 LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ-KRVFKAVWHYSHP 524 (540)
Q Consensus 470 v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~ 524 (540)
...++.. .+.++++....+.|.++|..+ ++.+..+.... .....+++.|++.
T Consensus 211 P~gi~~d-~~~lyva~~~~~~v~~~d~~~--g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 211 PFAVTSY-GKNLYYTDWKTNSVIAMDLAI--SKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEEETTT--TEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ceEEEEe-CCEEEEEECCCCeEEEEeCCC--CCceEEEccccccccceeeecCccC
Confidence 4567664 344444554668999999986 56666665332 2467888888764
No 239
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.90 E-value=2.1e-06 Score=80.36 Aligned_cols=225 Identities=12% Similarity=0.096 Sum_probs=137.6
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC--cEEE
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH--AVVL 353 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--~i~i 353 (540)
....++|+++|+++++. ..++.|..||.... ....+.. ...+.++++.+ +++++++..... .|..
T Consensus 33 ~pegia~~~~g~lyv~d----~~~~~I~~~d~~g~----~~~~~~~----~~~p~gia~~~-dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTN----HEVGEIVSITPDGN----QQIHATV----EGKVSGLAFTS-NGDLVATGWNADSIPVVS 99 (306)
T ss_dssp CEEEEEECTTSCEEEEE----TTTTEEEEECTTCC----EEEEEEC----SSEEEEEEECT-TSCEEEEEECTTSCEEEE
T ss_pred CcceEEECCCCCEEEEe----CCCCeEEEECCCCc----eEEEEeC----CCCceeEEEcC-CCcEEEEeccCCcceEEE
Confidence 35689999999877776 68899999998743 2222222 24588999999 888766654332 4667
Q ss_pred EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-ee-ee---------ccCccEEEEe
Q 009203 354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DF-KH---------QIESKCMSVL 422 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~-~~---------~~~~~~~~~~ 422 (540)
+|..+++. ..+...........++..+++..+++...++.|+++|...+.. +. .. ..-.....+
T Consensus 100 ~d~~~g~~----~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 100 LVKSDGTV----ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EECTTSCE----EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EcCCCCeE----EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 77777653 2221111222344555555555555555688999999876421 11 00 011123344
Q ss_pred ecCCCCCceEEEEEcCCCeEEEEECCC-Ccce-eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC
Q 009203 423 PNPCDFNLFMVQTGTPGRQLRLYDIRL-RQTE-IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA 500 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~ 500 (540)
++++. .++++-...+.|..||+.. +... ...+. . ......++++++|+++++....+.|.+|+..
T Consensus 175 -s~dg~--~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~--- 241 (306)
T 2p4o_A 175 -KRFGN--FLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---E----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD--- 241 (306)
T ss_dssp -EEETT--EEEEEETTTTEEEEEEBCTTSCBCCCEEEE---E----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT---
T ss_pred -CcCCC--EEEEEeCCCCEEEEEEeCCCCCCCccEEEe---c----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC---
Confidence 44431 4666777788999999875 2210 11110 0 1246678999999988777778899999976
Q ss_pred Ccc--cccccccccceeEEEEc---CCCCEEEEEEc
Q 009203 501 NKP--SQSIRAHQKRVFKAVWH---YSHPLLISISS 531 (540)
Q Consensus 501 ~~~--~~~~~~h~~~i~~l~~s---~~~~~l~s~~~ 531 (540)
++. +..+.......++++|. |+++.|+.++.
T Consensus 242 G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 242 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 343 22333333568999998 88876665554
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.89 E-value=1.1e-07 Score=90.02 Aligned_cols=262 Identities=8% Similarity=0.018 Sum_probs=155.5
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...+.++...++ +. |..++.+ +..+|. +++....+.. .........+. +..|..+ +.++.|
T Consensus 59 ~~~~~~~~~~~~-g~-l~v~t~~--l~~~d~-~g~~~~~~~~--------~~~~~~~~~~~--~~~l~v~----t~~~~l 119 (330)
T 3hxj_A 59 EIIECRPSIGKD-GT-IYFGSDK--VYAINP-DGTEKWRFDT--------KKAIVSDFTIF--EDILYVT----SMDGHL 119 (330)
T ss_dssp GEEEECCEETTT-TE-ECCSSCE--EEEECC-CGGGGGGSCC-------------CCEEEE--TTEEEEE----CTTSEE
T ss_pred CCcccceEEecC-Cc-EEEecCc--EEEECC-CCcEEEEEEC--------CCCcccCceEE--CCEEEEE----ecCCEE
Confidence 345677777764 55 4444444 888885 4444333321 11122334444 4567777 788999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
..+|.. +. . ...... ....+.++...+ ++. +..++.++.|..||.. ++..+... .....+.++.+
T Consensus 120 ~~~d~~-g~--~-~~~~~~---~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-----~~~~~~~~~~~ 184 (330)
T 3hxj_A 120 YAINTD-GT--E-KWRFKT---KKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFK-----TNDAITSAASI 184 (330)
T ss_dssp EEECTT-SC--E-EEEEEC---SSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEE-----CSSCCCSCCEE
T ss_pred EEEcCC-CC--E-EEEEcC---CCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEe-----cCCCceeeeEE
Confidence 999988 52 2 222221 123456666765 555 6667778999999998 65422221 23455677777
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ 461 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 461 (540)
.+++.+++ ++ +.|..|| .+++........ ..+.++...+++ .+..++.++.|..+|.. +... ..+.
T Consensus 185 d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g----~l~v~t~~~gl~~~~~~-g~~~-~~~~--- 251 (330)
T 3hxj_A 185 GKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG----TIYVTSLDGHLYAINPD-GTEK-WRFK--- 251 (330)
T ss_dssp CTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS----CEEEEETTTEEEEECTT-SCEE-EEEE---
T ss_pred cCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC----eEEEEcCCCeEEEECCC-CCEe-EEee---
Confidence 77777554 44 7899999 667665554433 334455566654 46667778888888753 3322 2111
Q ss_pred ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.....+.++.+.++| .|..++.+|.|..+|.. ++.+..+......+.++...++|. |..++.+|.+++..
T Consensus 252 ---~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~---g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 252 ---TGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD---GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALF 321 (330)
T ss_dssp ---CSSCCCSCCEECTTS-CEEEECTTCEEEEECTT---SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEE
T ss_pred ---CCCCccccceEcCCC-eEEEecCCCCEEEECCC---CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEe
Confidence 111223345566555 56667778889999863 555555544455677888878876 55578899988764
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.88 E-value=7.8e-07 Score=80.00 Aligned_cols=201 Identities=8% Similarity=-0.048 Sum_probs=132.8
Q ss_pred ceEEEEEecCCCcEEEEEeC--CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 225 KLRSLSLNPVNEQLFVTSAL--DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
....++|+|| +.++++.+. ++.|++.|+.+++....+... .+ .....+++. ++.|+.+. -.++.+
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~------~~-~fgeGi~~~--g~~lyv~t---~~~~~v 88 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMD------DS-YFGEGLTLL--NEKLYQVV---WLKNIG 88 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECC------TT-CCEEEEEEE--TTEEEEEE---TTCSEE
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecC------CC-cceEEEEEe--CCEEEEEE---ecCCEE
Confidence 3689999996 766666553 579999999999877665421 11 112245554 55565541 678999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
.++|..+. +.+..+... ...-.. +++ ++..++.+..++.|.++|..+.+.......-.....-..++.+.|
T Consensus 89 ~viD~~t~---~v~~~i~~g---~~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 89 FIYDRRTL---SNIKNFTHQ---MKDGWG--LAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp EEEETTTT---EEEEEEECC---SSSCCE--EEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEECCCC---cEEEEEECC---CCCeEE--EEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 99999976 445555431 011233 445 666666666788999999998765222221111011124678888
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--------------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--------------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 448 (540)
. +|..++....++.|.+.|..+++.+...... .....++++|++. .+++++...+.|.+.++.
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~--~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK--RIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT--EEEEEETTCSEEEEEEEE
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC--EEEEECCCCCeEEEEEEe
Confidence 8 6765555556789999999999987665442 3557899999864 588888888999998886
Q ss_pred CC
Q 009203 449 LR 450 (540)
Q Consensus 449 ~~ 450 (540)
..
T Consensus 237 ~~ 238 (266)
T 2iwa_A 237 LV 238 (266)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.88 E-value=1.9e-07 Score=97.19 Aligned_cols=289 Identities=9% Similarity=0.004 Sum_probs=165.0
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCC-CCC-CCc-eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP-KHR-RWP-EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-~h~-~~V-~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
.|+.++.++.|.-+|..+++.+.++......... ... ..+ ..+++ .+..++.+ +.|+.|..+|..+++...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~----~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVG----TLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEE----CTTSEEEEEETTTCCEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEE----cCCCEEEEEECCCCCEee
Confidence 4556667888888998888877665432110000 000 001 12333 34577777 889999999999984322
Q ss_pred eEEeecCCCCccccee-EEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeecc----------------
Q 009203 315 CVTFLDDKPHVKGIIN-SIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRN---------------- 371 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~---------------- 371 (540)
....... .....+. ...+. ++ .++.+.. +|.|..+|..+++.+|+.......
T Consensus 142 ~~~~~~~--~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 142 SQQTTDP--AKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp EEECSCT--TSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eeccCCC--CCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence 2222110 0001111 11121 33 4544433 589999999999987765432100
Q ss_pred ----------cCCcceeEEEeccCCCEEEEEeCCCe-------------------EEEEECCCCCeeeeeccC-------
Q 009203 372 ----------LHSSAVMGVAGMQQKQIVLSAGADKR-------------------IIGFDAGVGRADFKHQIE------- 415 (540)
Q Consensus 372 ----------~~~~~v~~l~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~------- 415 (540)
++......+++.+++..++.++.++. |..+|.++|+.+..++..
T Consensus 217 ~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~ 296 (668)
T 1kv9_A 217 WQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF 296 (668)
T ss_dssp CCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred CCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence 01111235788888889988887763 999999999987765542
Q ss_pred ---ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec----ccccc---------------Cc--------
Q 009203 416 ---SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG----WKQES---------------SE-------- 465 (540)
Q Consensus 416 ---~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~---------------~~-------- 465 (540)
..........++.....++.++.+|.++++|..+++.....-. +...+ .+
T Consensus 297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~ 376 (668)
T 1kv9_A 297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS 376 (668)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC
T ss_pred cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC
Confidence 1111111111221113688999999999999999885421100 00000 00
Q ss_pred ccc--CeEEEEEcCCCCEEEEE------------------------------------eCCCcEEEEeccCCCCcccccc
Q 009203 466 SQS--ALINQSWSPDGLYITSG------------------------------------SADPVIHLFDIRYSANKPSQSI 507 (540)
Q Consensus 466 ~~~--~v~~~~~sp~g~~l~sg------------------------------------~~dg~i~iwd~~~~~~~~~~~~ 507 (540)
..+ .-..++++|+...++.. ..+|.|..||+.+ ++.+-..
T Consensus 377 ~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t--G~~~W~~ 454 (668)
T 1kv9_A 377 PFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK--QKAAWKV 454 (668)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT--TEEEEEE
T ss_pred CccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC--CcEEEEc
Confidence 000 01126788876665542 1247799999987 5555444
Q ss_pred cccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 508 RAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 508 ~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
..+ .++....+...+.+++.++.||.|++||.
T Consensus 455 ~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 455 PYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSA 486 (668)
T ss_dssp EES-SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cCC-CCCcCceeEeCCCEEEEECCcccchhhhh
Confidence 422 23344445557788999999999999983
No 243
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.85 E-value=7.9e-07 Score=92.71 Aligned_cols=278 Identities=9% Similarity=0.026 Sum_probs=152.4
Q ss_pred EEEEecCCCcEEEEEeCCc-----------eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203 228 SLSLNPVNEQLFVTSALDG-----------VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD 296 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~ 296 (540)
++++.|.++++++.|+.+. .+.+||..+++........ ..+.....++++..+|.+++.|
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----~~~~~~~~~~~~~~~g~lyv~G---- 260 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----TKHDMFCPGISMDGNGQIVVTG---- 260 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----CSCCCSSCEEEECTTSCEEEEC----
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-----CCCCCccccccCCCCCCEEEeC----
Confidence 5667763388888887543 5889999887643221110 1233334467888999998888
Q ss_pred C-CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cC-----CcEEEEecCCCCCccccceee
Q 009203 297 S-GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SD-----HAVVLWSERDAEDSWKPKALH 369 (540)
Q Consensus 297 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~~~ 369 (540)
+ .+..+.+||..+.. .... ...+. ...-.++++.+ ++.+++.|+ .+ ..+.+||..+... ..+.
T Consensus 261 G~~~~~v~~yd~~t~~---W~~~-~~~~~-~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W----~~~~ 330 (656)
T 1k3i_A 261 GNDAKKTSLYDSSSDS---WIPG-PDMQV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW----TSLP 330 (656)
T ss_dssp SSSTTCEEEEEGGGTE---EEEC-CCCSS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEE----EEET
T ss_pred CCCCCceEEecCcCCc---eeEC-CCCCc-cccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcc----eeCC
Confidence 5 45689999998752 2221 11111 11223556667 889999988 34 4699999987652 1110
Q ss_pred ----cccCCcceeEEEeccCCCEEEEEeCC---------CeEEEEECCCCCeeeeecc----------CccEEEEeecCC
Q 009203 370 ----RNLHSSAVMGVAGMQQKQIVLSAGAD---------KRIIGFDAGVGRADFKHQI----------ESKCMSVLPNPC 426 (540)
Q Consensus 370 ----~~~~~~~v~~l~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~ 426 (540)
....... ....+..++..++.++.+ ..+..||..+......... .....++.+...
T Consensus 331 ~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~ 409 (656)
T 1k3i_A 331 NAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV 409 (656)
T ss_dssp TSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred Ccccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC
Confidence 0000000 001223345555555444 3577888887653221111 112233433321
Q ss_pred CCCceEEEEEcCCC-----------eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-------
Q 009203 427 DFNLFMVQTGTPGR-----------QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD------- 488 (540)
Q Consensus 427 ~~~~~~l~~~~~dg-----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d------- 488 (540)
+ +.+++.|+.++ .|.+||..+..-..... ..+. ....-.+++..|+|++++.|+.+
T Consensus 410 ~--~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 410 K--GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp T--TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred C--CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc---CCCC-CCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 1 15777776432 67788877654211100 0111 11112345667899999999864
Q ss_pred ----CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203 489 ----PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 489 ----g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
..+.+||..+.....+..+...........+.|+|++++.||.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999986322233322222222234556799999999985
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=4.6e-07 Score=94.35 Aligned_cols=274 Identities=11% Similarity=0.055 Sum_probs=156.0
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeec--CCCCCeEEEEecCCCCCc
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTA--DSGDSQISVLNLNKTKGR 313 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~--~~~d~~i~vwd~~~~~~~ 313 (540)
..++.++.|+.|..+|..+++...++...... ....+.+ .... + ..++++... .+.++.|..+|..+++..
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~----~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA----KPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTT----SSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCC----CcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 36777888999999999999987766432110 0011111 1111 3 355554100 012589999999998543
Q ss_pred eeEEeecCCCC-------------------------cccceeEEEEeCCCCCEEEEEecCC-------------------
Q 009203 314 ACVTFLDDKPH-------------------------VKGIINSIIFLPWENPCFATGGSDH------------------- 349 (540)
Q Consensus 314 ~~~~~~~~~~~-------------------------~~~~v~~~~~~p~~~~~l~s~~~dg------------------- 349 (540)
.........+. .......+++.| ...+++.++.++
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 33322111110 001123478888 777888887665
Q ss_pred cEEEEecCCCCCccccceeecccC----CcceeEEEeccCCC---EEEEEeCCCeEEEEECCCCCeeeeeccCc--cE--
Q 009203 350 AVVLWSERDAEDSWKPKALHRNLH----SSAVMGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRADFKHQIES--KC-- 418 (540)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~-- 418 (540)
.|..+|..+++..|..+....... ..++....+..+|+ .++.++.+|.++++|..+|+.+....... ..
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 350 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence 399999999998766553211100 12222223333665 68889999999999999999873322111 00
Q ss_pred ---------------------------------EEEeecCCCCCceEEEE------------------------------
Q 009203 419 ---------------------------------MSVLPNPCDFNLFMVQT------------------------------ 435 (540)
Q Consensus 419 ---------------------------------~~~~~~~~~~~~~~l~~------------------------------ 435 (540)
..++++|... +++.
T Consensus 351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g---~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG---LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT---EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC---EEEEeccccceEeeeeccccccccccccCccccc
Confidence 0123344321 2211
Q ss_pred ------EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203 436 ------GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 436 ------~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 509 (540)
...+|.|..||+.+++...... +...+....+...+.++++++.||.|++||..+ ++.+..+..
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~~~W~~~--------~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t--G~~l~~~~~ 497 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQKAAWKVP--------YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK--GEALWQFEA 497 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTEEEEEEE--------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT--CCEEEEEEC
T ss_pred cCCCCCCCccceEEEEeCCCCcEEEEcc--------CCCCCcCceeEeCCCEEEEECCcccchhhhhhc--ChhheEecC
Confidence 1234889999999887544321 111222233444688999999999999999998 677766654
Q ss_pred cccce-eEEEEcCCCC-EEEEEE
Q 009203 510 HQKRV-FKAVWHYSHP-LLISIS 530 (540)
Q Consensus 510 h~~~i-~~l~~s~~~~-~l~s~~ 530 (540)
..+.. .-+.+..+|+ +++.++
T Consensus 498 ~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 498 QSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEEe
Confidence 33211 2234455776 455444
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.84 E-value=6.6e-08 Score=95.95 Aligned_cols=241 Identities=9% Similarity=-0.009 Sum_probs=151.7
Q ss_pred cCCCcEEEE-EeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE-e-cCCCeEEEEeec--------------
Q 009203 233 PVNEQLFVT-SALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW-H-PQGNSLFSAHTA-------------- 295 (540)
Q Consensus 233 pd~~~~l~t-g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~-~~~~~l~s~~~~-------------- 295 (540)
+| |++|.. ...++.|.+.|+.+.++...+.. .....+..+++ + |++.+++++...
T Consensus 99 ~D-G~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 99 YD-GRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EE-EEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cC-CCEEEEEcCCCCEEEEEECCCceEeeEEeC-------CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 36 455544 45567899999999876664421 11134678888 5 899998887200
Q ss_pred CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC--------------------------
Q 009203 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-------------------------- 349 (540)
Q Consensus 296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-------------------------- 349 (540)
...++.+.++|..+. +....+.. .+....++++| ++.++++.+.+.
T Consensus 171 ~~~~~~vtvID~~t~---~v~~qI~V----gg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 171 ANYVNVFTAVDADKW---EVAWQVLV----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp GGEEEEEEEEETTTT---EEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred cccCceEEEEECCCC---eEEEEEEe----CCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 123467999999875 33333321 12346688999 888888877542
Q ss_pred ------------cEEEEecCC--CCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCC-------
Q 009203 350 ------------AVVLWSERD--AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGR------- 407 (540)
Q Consensus 350 ------------~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~------- 407 (540)
.|.+.|..+ +... ...+. -.....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~--~~~Ip---vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLF--TRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSS--EEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred EeccCCCeeEECcEEEEeCcccCCcee--EEEEe---cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 366666665 2210 01111 123467899999999887766 47789999998653
Q ss_pred -----eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC---------cceeeeeccccccCccccCeEEE
Q 009203 408 -----ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR---------QTEIHAFGWKQESSESQSALINQ 473 (540)
Q Consensus 408 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---------~~~~~~~~~~~~~~~~~~~v~~~ 473 (540)
.......+.....++|+|++ ...++..-|++|.+||+... ...+..+.. ....+|...-.++
T Consensus 318 ~~~~~v~~~v~vG~gP~h~aF~~dG---~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~ 393 (595)
T 1fwx_A 318 DPRSAVVAEPELGLGPLHTAFDGRG---NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGE 393 (595)
T ss_dssp CGGGGEEECCBCCSCEEEEEECTTS---EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTT
T ss_pred CcccceEEEcCCCCCcceEEECCCC---eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccce
Confidence 23445667788999999988 56778888999999999762 111211110 0111333222344
Q ss_pred EEcCCCCEEEEEeC---CCc----------EEEEeccC
Q 009203 474 SWSPDGLYITSGSA---DPV----------IHLFDIRY 498 (540)
Q Consensus 474 ~~sp~g~~l~sg~~---dg~----------i~iwd~~~ 498 (540)
.++|||++|++... |.- -.++|+..
T Consensus 394 t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 394 TLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp STTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred EeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence 67899999998753 332 17899965
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.79 E-value=1.6e-06 Score=78.07 Aligned_cols=195 Identities=7% Similarity=-0.051 Sum_probs=123.8
Q ss_pred ceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEE-EeCCCeEEEEECC
Q 009203 328 IINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDAG 404 (540)
Q Consensus 328 ~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~~ 404 (540)
....+.|++ ++.++++.+. ++.|.++|+.+++.. ..+....+ .....+++. +..|+. .-.++.+.++|..
T Consensus 22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~---~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVE---NIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEE---EEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEE---EEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 367999998 6755555543 579999999998852 22221111 222345554 445544 4457899999999
Q ss_pred CCCeeeeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE
Q 009203 405 VGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT 483 (540)
Q Consensus 405 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 483 (540)
+.+.+.....+ .....++++ + ..++++..++.|.++|..+.+...... .. .....-..++.+.|. +|...+
T Consensus 95 t~~v~~~i~~g~~~g~glt~D--g---~~l~vs~gs~~l~viD~~t~~v~~~I~-Vg-~~~~p~~~~nele~~-dg~lyv 166 (266)
T 2iwa_A 95 TLSNIKNFTHQMKDGWGLATD--G---KILYGSDGTSILYEIDPHTFKLIKKHN-VK-YNGHRVIRLNELEYI-NGEVWA 166 (266)
T ss_dssp TTEEEEEEECCSSSCCEEEEC--S---SSEEEECSSSEEEEECTTTCCEEEEEE-CE-ETTEECCCEEEEEEE-TTEEEE
T ss_pred CCcEEEEEECCCCCeEEEEEC--C---CEEEEECCCCeEEEEECCCCcEEEEEE-EC-CCCcccccceeEEEE-CCEEEE
Confidence 98887766544 444445543 3 233344468899999998876433321 00 000111236778888 776566
Q ss_pred EEeCCCcEEEEeccCCCCccccccccc-------------ccceeEEEEcCCCC-EEEEEEcCCcEEEEe
Q 009203 484 SGSADPVIHLFDIRYSANKPSQSIRAH-------------QKRVFKAVWHYSHP-LLISISSDLNIGLHK 539 (540)
Q Consensus 484 sg~~dg~i~iwd~~~~~~~~~~~~~~h-------------~~~i~~l~~s~~~~-~l~s~~~dg~v~iw~ 539 (540)
....++.|.+.|..+ ++.+..+... ....+.|+|+|+++ +++++...+.|.+-+
T Consensus 167 n~~~~~~V~vID~~t--g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 167 NIWQTDCIARISAKD--GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EETTSSEEEEEETTT--CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred ecCCCCeEEEEECCC--CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 665688999999998 6666666421 12568999999987 455565677777655
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.74 E-value=4.8e-05 Score=81.32 Aligned_cols=284 Identities=10% Similarity=0.074 Sum_probs=172.1
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...|.++...++ |.+. .|+.+ -|.+|+..++... .+.........-....|.++...++|.+-+ | +.++-|
T Consensus 262 ~~~i~~i~~d~~-g~lW-igt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-g----t~~~Gl 332 (795)
T 4a2l_A 262 SNYIRSLAMDSQ-NRLW-IGTFN-DLNIYHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQGGMWL-G----TYFGGL 332 (795)
T ss_dssp CSBEEEEEECTT-SCEE-EEESS-CEEEEETTTTEEE-EECCCTTSTTSCSSSCEEEEEECTTSCEEE-E----ESSSCE
T ss_pred CCeEEEEEEcCC-CCEE-EEeCC-hhheEcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCcCEEE-E----ECCCCe
Confidence 356999999885 6544 44445 5888997765421 111110000012346689999998887554 4 566778
Q ss_pred EEEecCCCCCceeEEeecCC----CCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc-------
Q 009203 303 SVLNLNKTKGRACVTFLDDK----PHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN------- 371 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------- 371 (540)
..|+..+.. +..+... .-....|.++...+ ++. |..|+.++-|..||..++.. ..+...
T Consensus 333 ~~~~~~~~~----~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~----~~~~~~~~~~~~~ 402 (795)
T 4a2l_A 333 NYYHPIRNR----FKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRF----TSYTLQEDESARG 402 (795)
T ss_dssp EEECGGGGS----SEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCE----EEECCC------C
T ss_pred EEeCCCccc----ceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcE----EEEecCCCCcccC
Confidence 888876542 1111110 11234589998887 665 55577777799999887652 222110
Q ss_pred cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-----cCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203 372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-----IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD 446 (540)
Q Consensus 372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d 446 (540)
.....|.+++..++|..|..|+.++-|.+||..+++...... ....+.++..++.+ . |..|+. +.+.+||
T Consensus 403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g---~-lwigt~-~Gl~~~~ 477 (795)
T 4a2l_A 403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG---N-LWLGTL-SALVRFN 477 (795)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS---C-EEEEES-SCEEEEE
T ss_pred CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC---C-EEEEec-CceeEEe
Confidence 124678999998888856778887789999998876533221 23457778777765 3 333444 5688999
Q ss_pred CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-------ccccceeEEEE
Q 009203 447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-------AHQKRVFKAVW 519 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-------~h~~~i~~l~~ 519 (540)
..++........ .....-....|.++..+++|.+.+... +-|..||..+ ... .+. .....|.++..
T Consensus 478 ~~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~--~~~--~~~~~~~~~~l~~~~i~~i~~ 550 (795)
T 4a2l_A 478 PEQRSFTTIEKE-KDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEG--LDI--QKASILPVSNVTKLFTNCIYE 550 (795)
T ss_dssp TTTTEEEECCBC-TTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEET--TEE--EECCCSCSCGGGGSCEEEEEE
T ss_pred CCCCeEEEcccc-ccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCC--CeE--EEecCCCCCCCCCCeeEEEEE
Confidence 876543211100 000011235789999999998766554 4588898875 222 111 23457899999
Q ss_pred cCCCCEEEEEEcCCcEEEEe
Q 009203 520 HYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 520 s~~~~~l~s~~~dg~v~iw~ 539 (540)
.++|.+.++.. +| |..||
T Consensus 551 d~~g~lWigT~-~G-l~~~d 568 (795)
T 4a2l_A 551 ASNGIIWVGTR-EG-FYCFN 568 (795)
T ss_dssp CTTSCEEEEES-SC-EEEEE
T ss_pred CCCCCEEEEeC-CC-ceeEC
Confidence 99998766553 34 55554
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.74 E-value=6.7e-05 Score=80.18 Aligned_cols=285 Identities=8% Similarity=0.053 Sum_probs=170.6
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...|.++...++ |. |..|+.++-|..|+....... .+..... ...-....|.++...++|.+-+ | +.++-|
T Consensus 309 ~~~i~~i~~D~~-g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~-~~~l~~~~V~~i~~d~~g~lWi-G----t~~~Gl 379 (795)
T 4a2l_A 309 QRSVRSIFMDSQ-GG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPY-KNSLSDNVVSCIVEDKDKNLWI-G----TNDGGL 379 (795)
T ss_dssp SSCEEEEEECTT-SC-EEEEESSSCEEEECGGGGSSE-EECCCTT-SSSCSCSSEEEEEECTTSCEEE-E----ESSSCE
T ss_pred CCcEEEEEEeCC-cC-EEEEECCCCeEEeCCCcccce-EEcCCCC-CCCCCCCeeEEEEECCCCCEEE-E----ECCCCe
Confidence 367999999885 65 556677777999987654321 1111000 0011235688999888887554 4 566678
Q ss_pred EEEecCCCCCceeEEeecCC-----CCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec---ccCC
Q 009203 303 SVLNLNKTKGRACVTFLDDK-----PHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR---NLHS 374 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~ 374 (540)
..||..++. ........ .-....|.++...+ ++.+|..|+.++-|..||..+++. ..+.. ....
T Consensus 380 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~----~~~~~~~~~l~~ 451 (795)
T 4a2l_A 380 NLYNPITQR---FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQV----ENFNQRNSQLVN 451 (795)
T ss_dssp EEECTTTCC---EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCE----EEECTTTSCCSC
T ss_pred EEEcCCCCc---EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcE----EEeecCCCCcCC
Confidence 999987642 22221110 01135689999887 777566778777899999987652 22211 1234
Q ss_pred cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEEC
Q 009203 375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDI 447 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~ 447 (540)
..|.++...++|.+.+. +.+ -|.+||..+++...... ....+.++..++.+ . +..|+. +.|..||.
T Consensus 452 ~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g---~-lWigt~-~Gl~~~~~ 524 (795)
T 4a2l_A 452 ENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK---R-LWIGGE-EGLSVFKQ 524 (795)
T ss_dssp SCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC---C-EEEEES-SCEEEEEE
T ss_pred CeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC---C-EEEEeC-CceEEEeC
Confidence 67899998888876554 444 58899988765533221 12456778777766 3 333444 56888998
Q ss_pred CCCcceeeeeccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCE
Q 009203 448 RLRQTEIHAFGWK-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPL 525 (540)
Q Consensus 448 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~ 525 (540)
.+... . +... .........|.++..+++|.+.++.. . -|..||..+..........+ ....|.++...++|.+
T Consensus 525 ~~~~~--~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~l 599 (795)
T 4a2l_A 525 EGLDI--Q-KASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRL 599 (795)
T ss_dssp ETTEE--E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCE
T ss_pred CCCeE--E-EecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCE
Confidence 76543 1 1100 01112345799999999998665443 3 48889877521111111111 1346889999989987
Q ss_pred EEEEEcCCcEEEE
Q 009203 526 LISISSDLNIGLH 538 (540)
Q Consensus 526 l~s~~~dg~v~iw 538 (540)
.+++ .+| |..|
T Consensus 600 Wi~t-~~G-l~~~ 610 (795)
T 4a2l_A 600 WLST-NRG-ISCF 610 (795)
T ss_dssp EEEE-TTE-EEEE
T ss_pred EEEc-CCc-eEEE
Confidence 7665 344 4444
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=6.1e-06 Score=73.20 Aligned_cols=184 Identities=9% Similarity=-0.002 Sum_probs=121.7
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
...|.|+ ++.++.+.+.+|.|+++|+.+++....+ ... ........++++.|+.+. ..++.+.+|
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~---------~~FgeGit~~g~~Ly~lt---w~~~~v~V~ 121 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG---------NIFAEGLASDGERLYQLT---WTEGLLFTW 121 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT---------TCCEEEEEECSSCEEEEE---SSSCEEEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---------CcceeEEEEeCCEEEEEE---ccCCEEEEE
Confidence 5788887 3788888889999999999999987776 221 122222333455555441 689999999
Q ss_pred ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203 306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ 385 (540)
Q Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 385 (540)
|..+. +.+..+... ..-+.+++ ++..|+.+..++.|.++|..+.+....+..-.....-..++.+.|. +
T Consensus 122 D~~Tl---~~~~ti~~~----~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 122 SGMPP---QRERTTRYS----GEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp ETTTT---EEEEEEECS----SCCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred ECCcC---cEEEEEeCC----CceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 99986 555555531 22245554 5667766666889999999998753333222211112345677887 6
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeeccC--------------ccEEEEeecCCCCCceEEEEEc
Q 009203 386 KQIVLSAGADKRIIGFDAGVGRADFKHQIE--------------SKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
|..++..-.+..|.+.|..+++.+...... .....++++|... +++++|-
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~--rlfVTGK 254 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG--RIFMTGK 254 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC--CEEEEET
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC--EEEEeCC
Confidence 766655556889999999999986543321 3567899998764 4667764
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.63 E-value=8.2e-06 Score=72.42 Aligned_cols=185 Identities=8% Similarity=0.019 Sum_probs=118.8
Q ss_pred eEEEEEecCCCcEEEEEeCCc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 226 LRSLSLNPVNEQLFVTSALDG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
...|.|+ + +.++.+.+.+| .|+++|+.+++...++... .........++++.|.... ..++.+.
T Consensus 45 tqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------~~~FgeGit~~g~~ly~lt---w~~~~v~ 110 (262)
T 3nol_A 45 TEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELG---------KRYFGEGISDWKDKIVGLT---WKNGLGF 110 (262)
T ss_dssp EEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECC---------TTCCEEEEEEETTEEEEEE---SSSSEEE
T ss_pred cceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecC---------CccceeEEEEeCCEEEEEE---eeCCEEE
Confidence 5788998 4 67777777766 8999999999877766432 1223333334466665551 5799999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
+||..+. +.+..+... ..-+.++ + ++..|+.+..++.|.++|..+.+....+........-..++.+.|.
T Consensus 111 v~D~~t~---~~~~ti~~~----~eG~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 111 VWNIRNL---RQVRSFNYD----GEGWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EEETTTC---CEEEEEECS----SCCCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred EEECccC---cEEEEEECC----CCceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 9999986 445555431 1123444 3 5566655555788999999987753322221100111345567886
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------------CccEEEEeecCCCCCceEEEEEc
Q 009203 384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------------ESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
+|..++..-.+..|.+.|..+++.+..... ......++++|... .++++|-
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~--~lfVTGK 244 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH--RLFVTGK 244 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT--EEEEEET
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC--EEEEECC
Confidence 676666555688999999999998655433 13457899998763 4666653
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.62 E-value=1.5e-05 Score=75.16 Aligned_cols=249 Identities=11% Similarity=0.048 Sum_probs=140.3
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC----CCC--------CCCCceeEEEec-CCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL----SPK--------HRRWPEDIAWHP-QGNSLF 290 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~----~~~--------h~~~V~~~~~~~-~~~~l~ 290 (540)
....+++|+++ +.++.++..++.|..|+...+.. ..+....... ..+ ....+.++++.+ +|++++
T Consensus 19 ~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 34677889985 88778888889999998875432 2221100000 000 013467899998 665544
Q ss_pred EEeecCCCCCeEEEEecCCCCCceeEEe-ecCCCCcccceeEEEEeCCCCCEEEEEec-----------------CCcEE
Q 009203 291 SAHTADSGDSQISVLNLNKTKGRACVTF-LDDKPHVKGIINSIIFLPWENPCFATGGS-----------------DHAVV 352 (540)
Q Consensus 291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-----------------dg~i~ 352 (540)
+ ...+.|..+|..++.. ..+.. ..+ ........+++.+.++.++++... ++.|.
T Consensus 97 ~-----d~~~~i~~~d~~~g~~-~~~~~~~~~--~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 97 V-----DCYYHLSVVGSEGGHA-TQLATSVDG--VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp E-----ETTTEEEEECTTCEEC-EEEESEETT--EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred E-----ECCCCEEEEeCCCCEE-EEecccCCC--CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence 4 3445588888765321 11111 111 111346789998734555555432 36788
Q ss_pred EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE-eCCCeEEEEECCCC---CeeeeeccCccEEEEeecCCCC
Q 009203 353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA-GADKRIIGFDAGVG---RADFKHQIESKCMSVLPNPCDF 428 (540)
Q Consensus 353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 428 (540)
.||..+++. ..+.. .......++|+++|+.|+.+ +..+.|.+|++... .......... ...++.++++
T Consensus 169 ~~d~~~~~~----~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G- 240 (322)
T 2fp8_A 169 KYDPSTKET----TLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG- 240 (322)
T ss_dssp EEETTTTEE----EEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS-
T ss_pred EEeCCCCEE----EEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC-
Confidence 888876652 22211 12345789999999866655 55689999998752 2111111223 6778888876
Q ss_pred CceEEEEEcC----------CCeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203 429 NLFMVQTGTP----------GRQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 429 ~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
.++++... .+.|..+|.. ++ ....+... .+. ...++++++ .++.++++...++.|.++++.
T Consensus 241 --~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~-~~~~~~~~---~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 241 --HFWVSSSEELDGNMHGRVDPKGIKFDEF-GN-ILEVIPLP---PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp --CEEEEEEEETTSSTTSCEEEEEEEECTT-SC-EEEEEECC---TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred --CEEEEecCcccccccCCCccEEEEECCC-CC-EEEEEECC---CCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 34444332 4668888875 33 22222111 111 234666666 366666666678889999887
Q ss_pred C
Q 009203 498 Y 498 (540)
Q Consensus 498 ~ 498 (540)
.
T Consensus 313 ~ 313 (322)
T 2fp8_A 313 K 313 (322)
T ss_dssp -
T ss_pred c
Confidence 4
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=8.7e-06 Score=72.26 Aligned_cols=186 Identities=10% Similarity=0.063 Sum_probs=118.9
Q ss_pred cceeEEEEeCCCCCEEEEEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEEC
Q 009203 327 GIINSIIFLPWENPCFATGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDA 403 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~ 403 (540)
.....+.|+ ++.++.+.+.+| .|+++|+.+++.. ..+.. ..........++++.|+... .++.+.+||.
T Consensus 43 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~---~~~~l---~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 43 AFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTL---QQIEL---GKRYFGEGISDWKDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp CEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEE---EEEEC---CTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred cccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEE---EEEec---CCccceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 345788998 456777777766 8999999999852 22221 12232322223355555544 5889999999
Q ss_pred CCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc-cCeEEEEEcCCCCEE
Q 009203 404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ-SALINQSWSPDGLYI 482 (540)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l 482 (540)
.+.+.+..+........++++. ..|+....++.|.++|..+.+...... . ...+.. ..++.+.|. +|...
T Consensus 115 ~t~~~~~ti~~~~eG~glt~dg-----~~L~~SdGs~~i~~iDp~T~~v~~~I~-V--~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 115 RNLRQVRSFNYDGEGWGLTHND-----QYLIMSDGTPVLRFLDPESLTPVRTIT-V--TAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp TTCCEEEEEECSSCCCCEEECS-----SCEEECCSSSEEEEECTTTCSEEEEEE-C--EETTEECCCEEEEEEE-TTEEE
T ss_pred ccCcEEEEEECCCCceEEecCC-----CEEEEECCCCeEEEEcCCCCeEEEEEE-e--ccCCccccccceeEEE-CCEEE
Confidence 9999888777655545555443 244444557889999999877543321 0 001111 234567776 77666
Q ss_pred EEEeCCCcEEEEeccCCCCccccccccc------------ccceeEEEEcCCCCEEEEEEc
Q 009203 483 TSGSADPVIHLFDIRYSANKPSQSIRAH------------QKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h------------~~~i~~l~~s~~~~~l~s~~~ 531 (540)
+..-.++.|.+.|..+ ++.+..+... ....+.|||+|+++.|+..|.
T Consensus 186 an~w~~~~I~vIDp~t--G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPET--GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTT--CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCC--CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6665688999999988 6655544321 235689999999887776664
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.61 E-value=1.1e-05 Score=71.54 Aligned_cols=186 Identities=9% Similarity=0.009 Sum_probs=119.5
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG 406 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 406 (540)
.....+.|+ ++.++++.+.+|.|+++|+.+++..... .. ....-..+++.. +.+.++.-.++.+.+||..+.
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~----l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME----RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE----EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTT
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE----CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcC
Confidence 345788887 4677788888899999999999863322 11 111123355542 344444456889999999999
Q ss_pred CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203 407 RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
+.+..+........++++. ..|+.+..++.|.++|..+.+...... ... ....-..++.+.|. +|...+...
T Consensus 127 ~~~~ti~~~~eGwGLt~Dg-----~~L~vSdGs~~l~~iDp~T~~v~~~I~-V~~-~g~~v~~lNeLe~~-dG~lyanvw 198 (268)
T 3nok_A 127 QRERTTRYSGEGWGLCYWN-----GKLVRSDGGTMLTFHEPDGFALVGAVQ-VKL-RGQPVELINELECA-NGVIYANIW 198 (268)
T ss_dssp EEEEEEECSSCCCCEEEET-----TEEEEECSSSEEEEECTTTCCEEEEEE-CEE-TTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCceeEEecCC-----CEEEEECCCCEEEEEcCCCCeEEEEEE-eCC-CCcccccccccEEe-CCEEEEEEC
Confidence 9887766655545555443 345555568899999999877533321 100 00111245667776 776665555
Q ss_pred CCCcEEEEeccCCCCccccccccc-------------ccceeEEEEcCCCCEEEEEE
Q 009203 487 ADPVIHLFDIRYSANKPSQSIRAH-------------QKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 487 ~dg~i~iwd~~~~~~~~~~~~~~h-------------~~~i~~l~~s~~~~~l~s~~ 530 (540)
.+..|.+.|..+ ++.+..+... ....+.|||+|+++.|+..+
T Consensus 199 ~s~~I~vIDp~T--G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 HSSDVLEIDPAT--GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCSEEEEECTTT--CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEeCCC--CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 688999999988 6665544321 13568999999876655554
No 254
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.60 E-value=9.9e-05 Score=65.89 Aligned_cols=211 Identities=11% Similarity=0.047 Sum_probs=129.7
Q ss_pred cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
+.|=.+.+..++|+|+++.++++...++.|...|.. ++...++... + ....-.+++.+++.++++. -.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~------g-~~D~EGIa~~~~g~~~vs~----E~ 89 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD------F-VKDLETIEYIGDNQFVISD----ER 89 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS------S-CSSEEEEEECSTTEEEEEE----TT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC------C-CCChHHeEEeCCCEEEEEE----CC
Confidence 345556799999999766677778888999999987 6655554321 1 1335678999888876776 67
Q ss_pred CCeEEEEecCCCCCceeEEeecC---CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee-----c
Q 009203 299 DSQISVLNLNKTKGRACVTFLDD---KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH-----R 370 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~ 370 (540)
++.+.++++........+..... .........+|+|+| .++.|+++.......+|.+............. .
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~ 168 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR 168 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence 88999999876532122222211 112234478999999 66666666555455555554210000011111 1
Q ss_pred ccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeeccC----------ccEEEEeecCCCCCceEEEEEcCC
Q 009203 371 NLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQIE----------SKCMSVLPNPCDFNLFMVQTGTPG 439 (540)
Q Consensus 371 ~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~d 439 (540)
..+...+.+++++|.. .+++.......|..+|.. ++.+...... ...-.+++++++ .+.+ .+..
T Consensus 169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G---~lyI-vsE~ 243 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG---NIYI-VSEP 243 (255)
T ss_dssp TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC---CEEE-EETT
T ss_pred ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC---CEEE-EcCC
Confidence 1234567899999854 455566667789999977 5554443332 356789999987 3333 3555
Q ss_pred CeEEEEEC
Q 009203 440 RQLRLYDI 447 (540)
Q Consensus 440 g~v~i~d~ 447 (540)
+.++.|.-
T Consensus 244 n~~y~f~~ 251 (255)
T 3qqz_A 244 NRFYRFTP 251 (255)
T ss_dssp TEEEEEEC
T ss_pred ceEEEEEe
Confidence 66666643
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.60 E-value=5.4e-06 Score=84.47 Aligned_cols=267 Identities=8% Similarity=0.038 Sum_probs=148.4
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeecCCC------CCeEEEEecCC
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTADSG------DSQISVLNLNK 309 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~~~~------d~~i~vwd~~~ 309 (540)
..++.++.|+.+..+|..+++...+....... .+ ..+.+ .... + ..++++ +. ++.|..+|..+
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~--~~--~~~~~~P~v~-~-g~v~vg----~~~~~~~~~g~v~a~D~~t 185 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPK--VG--STLTQAPFVA-K-DTVLMG----CSGAELGVRGAVNAFDLKT 185 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGG--GT--CBCCSCCEEE-T-TEEEEE----CBCGGGTCCCEEEEEETTT
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCC--cc--ceeccCCEEE-C-CEEEEE----ecCCccCCCCEEEEEECCC
Confidence 46777788999999999999877665432110 00 01111 1111 3 455555 33 78999999998
Q ss_pred CCCceeEEeecCC------CC-------------------------ccc-ceeEEEEeCCCCCEEEEEecC---------
Q 009203 310 TKGRACVTFLDDK------PH-------------------------VKG-IINSIIFLPWENPCFATGGSD--------- 348 (540)
Q Consensus 310 ~~~~~~~~~~~~~------~~-------------------------~~~-~v~~~~~~p~~~~~l~s~~~d--------- 348 (540)
++........... +. ..+ ....+++.+ ....++.++.+
T Consensus 186 G~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~ 264 (571)
T 2ad6_A 186 GELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMR 264 (571)
T ss_dssp CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGS
T ss_pred CcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCcc
Confidence 8432222221100 00 000 012356777 55566665532
Q ss_pred -------CcEEEEecCCCCCccccceeecc-----cCCcceeEEEeccCCC---EEEEEeCCCeEEEEECCCCCeeeeec
Q 009203 349 -------HAVVLWSERDAEDSWKPKALHRN-----LHSSAVMGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRADFKHQ 413 (540)
Q Consensus 349 -------g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 413 (540)
+.|..+|..+++..|..+..... ....++. +....+|+ .++.++.+|.++++|..+|+.+....
T Consensus 265 ~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 265 PGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp CSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 35999999999976655432110 1112221 22224674 67788899999999999999876543
Q ss_pred cCc--------------cE--------------------------EEEeecCCCCCceEEEEE-----------------
Q 009203 414 IES--------------KC--------------------------MSVLPNPCDFNLFMVQTG----------------- 436 (540)
Q Consensus 414 ~~~--------------~~--------------------------~~~~~~~~~~~~~~l~~~----------------- 436 (540)
... .+ ..++++|.. .++++.
T Consensus 344 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~---g~~yv~~~~~~~~~~~~~~~~~~ 420 (571)
T 2ad6_A 344 VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES---RTLYAGLNHICMDWEPFMLPYRA 420 (571)
T ss_dssp SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT---TEEEEEEECEEEEEEECCCCCCT
T ss_pred ccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC---CEEEEEchhcccccccccccccc
Confidence 321 00 112344433 123222
Q ss_pred --------------------cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203 437 --------------------TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI 496 (540)
Q Consensus 437 --------------------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~ 496 (540)
..+|.|..||+.+++....... ...+.+..+...+..++.++.||.|+.||.
T Consensus 421 g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 421 GQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--------KFAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp TSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--------SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred CCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--------CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 1357899999998875443210 111222222335667888999999999999
Q ss_pred cCCCCccccccccccc-ceeEEEEcCCCCEEEE
Q 009203 497 RYSANKPSQSIRAHQK-RVFKAVWHYSHPLLIS 528 (540)
Q Consensus 497 ~~~~~~~~~~~~~h~~-~i~~l~~s~~~~~l~s 528 (540)
.+ ++.+..+..... .-.-+.+..+|+.++.
T Consensus 493 ~t--G~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 493 KD--GKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TT--CCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CC--CCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 98 677666653221 1122345577764443
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.58 E-value=3.1e-05 Score=78.87 Aligned_cols=208 Identities=12% Similarity=0.028 Sum_probs=116.2
Q ss_pred EEEEEeC-CceEEEEEc-CCCCCcceeecccccCCC---CCCCCceeEEEecCCCe----EEEEeecCCCCCeEEEEecC
Q 009203 238 LFVTSAL-DGVIRLWQL-QSRGSGASLLSTTDCLSP---KHRRWPEDIAWHPQGNS----LFSAHTADSGDSQISVLNLN 308 (540)
Q Consensus 238 ~l~tg~~-dg~v~iw~~-~~~~~~~~~~~~~~~~~~---~h~~~V~~~~~~~~~~~----l~s~~~~~~~d~~i~vwd~~ 308 (540)
.|..++. ++.|.-+|. .+++.+.++......... .-......+++.|.+.. |+.+ +.|+.|..+|..
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~----t~dg~l~AlDa~ 139 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT----QLDGNVAALNAE 139 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE----CTTSEEEEEETT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEE----cCCCEEEEEECC
Confidence 3444455 677888888 777766655332110000 00000123566554444 7777 889999999999
Q ss_pred CCCCceeEEeecCCCCccccee-EEEEeCCCCCEEEEEe------cCCcEEEEecCCCCCccccceeeccc--C------
Q 009203 309 KTKGRACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGG------SDHAVVLWSERDAEDSWKPKALHRNL--H------ 373 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~--~------ 373 (540)
+++....... .... ....+. ...+. ++ .++.++ .+|.|+-+|..+++.+|+........ +
T Consensus 140 TG~~~W~~~~-~~~~-~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 140 TGETVWKVEN-SDIK-VGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp TCCEEEEEEC-CCGG-GTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred CCCEEEeecC-CCCC-ccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 8843222221 1100 000111 11122 34 455554 37999999999999876554321100 0
Q ss_pred ------------------------Ccce-eEEEeccCCCEEEEEeCCC----------------eEEEEECCCCCeeeee
Q 009203 374 ------------------------SSAV-MGVAGMQQKQIVLSAGADK----------------RIIGFDAGVGRADFKH 412 (540)
Q Consensus 374 ------------------------~~~v-~~l~~s~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~ 412 (540)
...+ ..+++.++..+++.++.++ .|..+|.++|+.+..+
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~ 294 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY 294 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence 0001 1356667778888877653 8999999999987665
Q ss_pred ccCcc----------EEEEeec-CCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203 413 QIESK----------CMSVLPN-PCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 413 ~~~~~----------~~~~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 454 (540)
+.... ..-+... .++.....++.++.+|.++++|..+++...
T Consensus 295 q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 295 QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 54321 1111111 222111467778999999999999987543
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.58 E-value=3.7e-05 Score=71.74 Aligned_cols=234 Identities=12% Similarity=0.056 Sum_probs=132.1
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC-C-Ce
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG-D-SQ 301 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~-d-~~ 301 (540)
....+++|+|+ +.++++-..++.|..||.... ....+ . ....+..+++.++|+++++. .. + ..
T Consensus 32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~-~~~~~-~--------~~~~p~gia~~~dG~l~vad----~~~~~~~ 96 (306)
T 2p4o_A 32 TFLENLASAPD-GTIFVTNHEVGEIVSITPDGN-QQIHA-T--------VEGKVSGLAFTSNGDLVATG----WNADSIP 96 (306)
T ss_dssp CCEEEEEECTT-SCEEEEETTTTEEEEECTTCC-EEEEE-E--------CSSEEEEEEECTTSCEEEEE----ECTTSCE
T ss_pred CCcceEEECCC-CCEEEEeCCCCeEEEECCCCc-eEEEE-e--------CCCCceeEEEcCCCcEEEEe----ccCCcce
Confidence 35778999995 887777778899999987643 21111 1 11347889999999966554 22 2 24
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-cccc-cee---ecccCCcc
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED-SWKP-KAL---HRNLHSSA 376 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~-~~~---~~~~~~~~ 376 (540)
|..+|..++.. ..+..+.. ......++..+ ++..+++...++.|+++|..++.. ++.. ..+ ........
T Consensus 97 v~~~d~~~g~~-~~~~~~~~----~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 97 VVSLVKSDGTV-ETLLTLPD----AIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEEECTTSCE-EEEEECTT----CSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred EEEEcCCCCeE-EEEEeCCC----ccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 66677666532 11111111 12245555555 555555555688999999875421 0000 000 00011123
Q ss_pred eeEEEeccCCCEEEEE-eCCCeEEEEECCC-CCe--eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 377 VMGVAGMQQKQIVLSA-GADKRIIGFDAGV-GRA--DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
.+.+ ++++..|+.+ ...+.|..||+.. +.. ............+++++++ .++++....+.|.+||.. ++.
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG---~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG---NLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC---CEEEECBTTCCEEEECTT-CCE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCC---CEEEEeCCCCeEEEECCC-CCE
Confidence 4555 7788766554 4577899999874 332 1111111233456667766 566666677899999975 332
Q ss_pred eeeeeccccccCccccCeEEEEEc---CCCCEEEEEeCCC
Q 009203 453 EIHAFGWKQESSESQSALINQSWS---PDGLYITSGSADP 489 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~s---p~g~~l~sg~~dg 489 (540)
.. .. ........+++++|. |+++.|+..+..+
T Consensus 245 ~~-~~----~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 245 TI-IA----QAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EE-EE----CGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EE-Ee----ecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 11 10 111112468999998 8887777665543
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.57 E-value=0.00022 Score=67.72 Aligned_cols=239 Identities=10% Similarity=-0.053 Sum_probs=143.3
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
+..+|.+..+ .+.++++ ....|+..++..... ..+. .....+..++|++.+..|+.+ +...+.|.
T Consensus 34 d~~~C~~~~~-~~~ll~~--~~~~I~~i~~~g~~~-~~~~--------~~~~~~~~l~~d~~~~~ly~~---D~~~~~I~ 98 (349)
T 3v64_C 34 DRRSCKALGP-EPVLLFA--NRIDIRQVLPHRSEY-TLLL--------NNLENAIALDFHHRRELVFWS---DVTLDRIL 98 (349)
T ss_dssp TSSCEEESSS-CCEEEEE--CBSCEEEECTTSCCE-EEEE--------CSCSCEEEEEEETTTTEEEEE---ETTTTEEE
T ss_pred CCCccccccc-CceeEee--cccceEEEeCCCCee-EEee--------cCCCceEEEEEeccccEEEEE---eccCCceE
Confidence 3456666666 2444443 234577777765432 1111 112346789999866666554 16788999
Q ss_pred EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
.+++..... ...... .......+++.+.++.++++-...+.|.+.++..... ..+. .........++++
T Consensus 99 r~~~~g~~~---~~~~~~---~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~-~~~l~~P~~iavd 167 (349)
T 3v64_C 99 RANLNGSNV---EEVVST---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR----KVLL-WQSLEKPRAIALH 167 (349)
T ss_dssp EEETTSCSC---EEEECS---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEE-CTTCSCEEEEEEE
T ss_pred EEecCCCCc---eEEEeC---CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce----EEEE-eCCCCCcceEEEe
Confidence 999986422 222221 1234678999874566666666778999999876542 2222 2233567899999
Q ss_pred cCCCEEEEE-eCC-CeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 384 QQKQIVLSA-GAD-KRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 384 ~~~~~l~~~-~~d-g~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
|.+..|+.. ... +.|..+++......... ..-.....++++|.+. .+.++-...+.|..+|+........ .
T Consensus 168 p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~--~lY~aD~~~~~I~~~~~dG~~~~~~-~--- 241 (349)
T 3v64_C 168 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR--RMYWVDAKHHVIERANLDGSHRKAV-I--- 241 (349)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEE-E---
T ss_pred cCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCC--EEEEEECCCCEEEEEeCCCCceEEE-E---
Confidence 865555544 444 78999998754332222 2234567899987653 4566667778999999875432211 1
Q ss_pred cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
........++++. .+.++++-...+.|..++..+
T Consensus 242 ---~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 242 ---SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp ---CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ---eCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccC
Confidence 1123356778873 455566666678888887443
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=7e-05 Score=79.20 Aligned_cols=217 Identities=12% Similarity=0.117 Sum_probs=120.1
Q ss_pred EEeccchhcccccC-ceEEEEEe-cCCCcEEEEEe-CC----ceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEE
Q 009203 211 HCHTSNHVSSLHKR-KLRSLSLN-PVNEQLFVTSA-LD----GVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAW 282 (540)
Q Consensus 211 ~~~~~~~~~~~h~~-~V~~l~~s-pd~~~~l~tg~-~d----g~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~ 282 (540)
.+.+.+....+|.- .+...+|| || |++||.+. .+ .+|+++|+.++ +.+.... ......++|
T Consensus 160 vlld~n~~a~~~~~~~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~----------~~~~~~~~W 228 (751)
T 2xe4_A 160 VIIDVNQVAEGKAFCDVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV----------SGTNGEIVW 228 (751)
T ss_dssp EEEEHHHHTTTCSCCEEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE----------EEECSCCEE
T ss_pred EEechhHhccCCCeEEEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc----------cCceeeEEE
Confidence 34455544566664 78899999 97 77666543 23 35999999987 5321110 011346899
Q ss_pred ecCCCeEEEEeecCCC-CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CCcEEEEecCC
Q 009203 283 HPQGNSLFSAHTADSG-DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DHAVVLWSERD 358 (540)
Q Consensus 283 ~~~~~~l~s~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~ 358 (540)
+|||+.|+........ ...|.++++.++.... ...+... .......+.|+| ++++|+..+. ...|+++|+.+
T Consensus 229 spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~-~lv~~~~--~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 229 GPDHTSLFYVTKDETLRENKVWRHVMGKLQSED-VCLYEEH--NPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGC-EEEEECC--CTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSS
T ss_pred ecCCCEEEEEEECCCCCCCEEEEEECCCCchhc-EEEEecC--CCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCC
Confidence 9999988776221111 1368888887653211 2222221 123467889999 9988876653 34588899987
Q ss_pred CCCccccceeecccCCcceeEEEeccCCCEEEEEeCC----CeEEEEECCCC-C--e-eeeeccCccEEEEeecCCCCCc
Q 009203 359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD----KRIIGFDAGVG-R--A-DFKHQIESKCMSVLPNPCDFNL 430 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~-~--~-~~~~~~~~~~~~~~~~~~~~~~ 430 (540)
+........+. ........++.|+.++.+++....+ ..|..+|+.++ . . +........+..+.+...
T Consensus 305 ~~~~~~~~~l~-~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~---- 379 (751)
T 2xe4_A 305 GNAHNTLEIVR-PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSN---- 379 (751)
T ss_dssp CTTCCCEEESS-CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSS----
T ss_pred CCCCceeEEee-cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECC----
Confidence 53111001121 2233445556655433444444333 36777887652 2 2 222222223445555432
Q ss_pred eEEEEEcCCCe--EEEEEC
Q 009203 431 FMVQTGTPGRQ--LRLYDI 447 (540)
Q Consensus 431 ~~l~~~~~dg~--v~i~d~ 447 (540)
.++++...++. |.++|+
T Consensus 380 ~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 380 YLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEEEETTEEEEEEEEC
T ss_pred EEEEEEEeCCEEEEEEEec
Confidence 46777777775 555665
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=8.2e-05 Score=72.88 Aligned_cols=252 Identities=10% Similarity=0.051 Sum_probs=139.1
Q ss_pred CceEEEEEec-CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC-CCe
Q 009203 224 RKLRSLSLNP-VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG-DSQ 301 (540)
Q Consensus 224 ~~V~~l~~sp-d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~-d~~ 301 (540)
.....|+|+| +++.++++-. .+.|+.+|...+.. ..+.. .......++|+++|++|+++-..++. ...
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v-~~~~~--------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYV-STVYS--------GLSKVRTICWTHEADSMIITNDQNNNDRPN 206 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEE-EEEEC--------CCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred CCCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEE-EEEec--------CCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence 4568899998 3455444443 38899999876542 22211 22447789999999966665110001 113
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
+.+++.. +.... ...+.. .....+++++|.++.++++-..++.|..|+..++.. ..+...........++
T Consensus 207 v~~~~~~-g~~~~-~~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~----~~~~~~~~~~~P~gia 276 (430)
T 3tc9_A 207 NYILTRE-SGFKV-ITELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET----TPLFTIQDSGWEFHIQ 276 (430)
T ss_dssp EEEEEGG-GTSCS-EEEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE----EEEEECSSSSCCEEEE
T ss_pred EEEEeCC-Cceee-eeeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE----EEEEEcCCCCcceeEE
Confidence 4444443 22111 112211 123678899995666666666778999999987642 1222222234578899
Q ss_pred eccCCCEEE-EEeCCCeEEEEECCC--CCe-----eeee-cc------------CccEE-EEeecCC-----CCCceEEE
Q 009203 382 GMQQKQIVL-SAGADKRIIGFDAGV--GRA-----DFKH-QI------------ESKCM-SVLPNPC-----DFNLFMVQ 434 (540)
Q Consensus 382 ~s~~~~~l~-~~~~dg~i~iwd~~~--~~~-----~~~~-~~------------~~~~~-~~~~~~~-----~~~~~~l~ 434 (540)
|+|+|++|+ +-...+.|..++... +.. +... .. -.... .++..+. +..+.+++
T Consensus 277 ~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyv 356 (430)
T 3tc9_A 277 FHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYF 356 (430)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred EcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEE
Confidence 999999554 445678899987653 211 0000 00 00112 2333211 12235666
Q ss_pred EEcCCCeEEEEECCCCcceeeeecc-----cc------ccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEecc
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGW-----KQ------ESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~-----~~------~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~ 497 (540)
+-...+.|+.++.. +. .....+. .. .....-.....++++|+ |.++++-..++.|+.++++
T Consensus 357 aD~~n~~I~~i~~~-G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 357 CDRENHCIRILTPQ-GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEGGGTEEEEECTT-SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECCCcEEEEECCC-Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 66667888888843 32 2222211 00 00011235889999994 6666666667888888764
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.55 E-value=1.8e-05 Score=80.67 Aligned_cols=288 Identities=11% Similarity=0.026 Sum_probs=155.3
Q ss_pred EEEEEeC-CceEEEEEc-CCCCCcceeecccccCCC--CCCCC-ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC
Q 009203 238 LFVTSAL-DGVIRLWQL-QSRGSGASLLSTTDCLSP--KHRRW-PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG 312 (540)
Q Consensus 238 ~l~tg~~-dg~v~iw~~-~~~~~~~~~~~~~~~~~~--~h~~~-V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~ 312 (540)
.+..++. ++.|.-+|. .+++.+.++......... ..... -..++. ++..++.+ +.|+.|..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~----~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKK----QANGHLLALDAKTGKI 137 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEE----CTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEE----eCCCEEEEEECCCCCE
Confidence 3444455 677888888 777766555322110000 00000 012333 35577777 8899999999998843
Q ss_pred ceeEEeecCCCCccccee-EEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeecc--------------
Q 009203 313 RACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRN-------------- 371 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------------- 371 (540)
...... .... ....+. ..... ++ .++.++. ++.|..+|..+++.+|+.......
T Consensus 138 ~W~~~~-~~~~-~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 138 NWEVEV-CDPK-VGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp EEEEEC-CCGG-GTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred EEEecC-CCCC-ccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 222221 1100 000111 11121 33 4555554 789999999999987655432110
Q ss_pred -------------------cCCcceeEEEeccCCCEEEEEeCC----------------CeEEEEECCCCCeeeeeccCc
Q 009203 372 -------------------LHSSAVMGVAGMQQKQIVLSAGAD----------------KRIIGFDAGVGRADFKHQIES 416 (540)
Q Consensus 372 -------------------~~~~~v~~l~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~ 416 (540)
+.......+++.++...++.++.+ +.|..+|.++|+.+..++...
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence 000001235666766777776642 369999999999876654321
Q ss_pred ----------cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc------C-ccccCe---------
Q 009203 417 ----------KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES------S-ESQSAL--------- 470 (540)
Q Consensus 417 ----------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~------~-~~~~~v--------- 470 (540)
...-+....++....+++.++.+|.+.++|..+++...... ..... . ....++
T Consensus 293 ~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~-~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK-VDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE-SSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred CcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec-ccCCccccccccccCCceecccccCCCC
Confidence 11111111222111256778899999999999887543221 00000 0 000000
Q ss_pred -----------------EEEEEcCCCCEEEEEe-------------------------------------CCCcEEEEec
Q 009203 471 -----------------INQSWSPDGLYITSGS-------------------------------------ADPVIHLFDI 496 (540)
Q Consensus 471 -----------------~~~~~sp~g~~l~sg~-------------------------------------~dg~i~iwd~ 496 (540)
..++|+|+...|++.. .+|.|..||.
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 2467888877776653 3478888998
Q ss_pred cCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 497 RYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 497 ~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
.+ ++.+-.+.. ...+....+...+.+++.++.||.|+.||.
T Consensus 452 ~t--G~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 452 TT--GKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp TT--CCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred CC--CCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 87 555444432 222333333334667777899999999873
No 262
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.54 E-value=8.3e-06 Score=76.97 Aligned_cols=215 Identities=11% Similarity=0.099 Sum_probs=131.6
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT 317 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~ 317 (540)
.|..++.++.|..+|.. ++...... .+...+.++...+++. |..+ +.++.|..||.. +. ...
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~--------~~~~~~~~~~~~~~g~-l~vg----t~~~~l~~~d~~-g~---~~~ 170 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFK--------TKKAIYATPIVSEDGT-IYVG----SNDNYLYAINPD-GT---EKW 170 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEE--------CSSCCCSCCEECTTSC-EEEE----CTTSEEEEECTT-SC---EEE
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEc--------CCCceeeeeEEcCCCE-EEEE----cCCCEEEEECCC-CC---EeE
Confidence 46677788999999987 65444332 1223456677777776 4555 778999999988 52 222
Q ss_pred eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCe
Q 009203 318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKR 397 (540)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~ 397 (540)
.+.. ....+.++.+.+ ++.+++ ++ +.|..|| .+++..+.. ......+.++...++|. |+.++.++.
T Consensus 171 ~~~~---~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~-----~~~~~~~~~~~~~~~g~-l~v~t~~~g 236 (330)
T 3hxj_A 171 RFKT---NDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNF-----YAGYWTVTRPAISEDGT-IYVTSLDGH 236 (330)
T ss_dssp EEEC---SSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEE-----CCSSCCCSCCEECTTSC-EEEEETTTE
T ss_pred EEec---CCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEE-----ccCCcceeceEECCCCe-EEEEcCCCe
Confidence 2221 123466777766 666444 44 7899999 665532211 22345678888887765 555677788
Q ss_pred EEEEECCCCCeeeeeccCcc-EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 398 IIGFDAGVGRADFKHQIESK-CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 398 i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
|..+|. ++..+........ ...+...+++ .|..++.+|.|..+|. +++... .+. .....+.++..+
T Consensus 237 l~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g----~l~v~t~~ggl~~~d~-~g~~~~-~~~------~~~~~~~~~~~d 303 (330)
T 3hxj_A 237 LYAINP-DGTEKWRFKTGKRIESSPVIGNTD----TIYFGSYDGHLYAINP-DGTEKW-NFE------TGSWIIATPVID 303 (330)
T ss_dssp EEEECT-TSCEEEEEECSSCCCSCCEECTTS----CEEEECTTCEEEEECT-TSCEEE-EEE------CSSCCCSCCEEC
T ss_pred EEEECC-CCCEeEEeeCCCCccccceEcCCC----eEEEecCCCCEEEECC-CCcEEE-EEE------cCCccccceEEc
Confidence 888875 4555444333222 2223344343 5777888889999996 444322 211 123456677777
Q ss_pred CCCCEEEEEeCCCcEEEEeccC
Q 009203 477 PDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 477 p~g~~l~sg~~dg~i~iwd~~~ 498 (540)
++|. |..|+.+|.+++.....
T Consensus 304 ~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 304 ENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TTCC-EEEECTTSCEEEEEC--
T ss_pred CCCE-EEEEcCCCeEEEEeccc
Confidence 7776 55577899999887764
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.51 E-value=5.1e-05 Score=66.74 Aligned_cols=187 Identities=9% Similarity=-0.033 Sum_probs=118.7
Q ss_pred CceEEEEEecCCCcEEEEEeCCc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
.-...|.|++ +.++.+.+.+| .|+.+|+.+++......... ..........++.|.... ..++.
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---------~~fgeGi~~~~~~ly~lt---w~~~~ 86 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---------PYFGAGIVAWRDRLIQLT---WRNHE 86 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---------TCCEEEEEEETTEEEEEE---SSSSE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---------CcceeEEEEeCCEEEEEE---eeCCE
Confidence 3467899985 66777777654 89999999998776664321 122233333455555541 68999
Q ss_pred EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
+.+||..+. +.+..+... ..-+.++. ++..|+.+..++.|.++|..+.+....+..-.....-..++.+.
T Consensus 87 v~v~D~~tl---~~~~ti~~~----~~Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 87 GFVYDLATL---TPRARFRYP----GEGWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEEEETTTT---EEEEEEECS----SCCCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEECCcC---cEEEEEeCC----CCceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 999999986 556555531 22345554 55555555568899999999877533222211101113456677
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeeecc--------------CccEEEEeecCCCCCceEEEEEc
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI--------------ESKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
|. +|..++..-.+..|.+.|..+++.+..... ......++++|... +++++|-
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~--~lfVTGK 223 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD--RLFVTGK 223 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT--EEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC--EEEEECC
Confidence 76 676665555678999999999998654331 23557899998653 5667664
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.51 E-value=2.7e-05 Score=79.34 Aligned_cols=275 Identities=11% Similarity=0.015 Sum_probs=150.2
Q ss_pred cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCce-eEEEec---CCC-eEEEEeec--CCCCCeEEEEecCC
Q 009203 237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE-DIAWHP---QGN-SLFSAHTA--DSGDSQISVLNLNK 309 (540)
Q Consensus 237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~---~~~-~l~s~~~~--~~~d~~i~vwd~~~ 309 (540)
..++.++.|+.|.-+|..+++............ +. .+. ...... +|+ .++++... .+.++.|..+|..+
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~--~~--~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGA--GY--TMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGGG--TC--BCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc--Cc--ccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 357777889999999999998776654321100 00 011 111121 233 55554100 01378999999998
Q ss_pred CCCceeEEeecC---------------CCC--------------------cccceeEEEEeCCCCCEEEEEec-------
Q 009203 310 TKGRACVTFLDD---------------KPH--------------------VKGIINSIIFLPWENPCFATGGS------- 347 (540)
Q Consensus 310 ~~~~~~~~~~~~---------------~~~--------------------~~~~v~~~~~~p~~~~~l~s~~~------- 347 (540)
++.......... ... ....-..+++.| ...+++.+..
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~ 272 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNT 272 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccC
Confidence 853222211000 000 000012456777 5666666653
Q ss_pred -------------C----CcEEEEecCCCCCccccceeeccc-----CCcceeEEEec-cCCC---EEEEEeCCCeEEEE
Q 009203 348 -------------D----HAVVLWSERDAEDSWKPKALHRNL-----HSSAVMGVAGM-QQKQ---IVLSAGADKRIIGF 401 (540)
Q Consensus 348 -------------d----g~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~l~~s-~~~~---~l~~~~~dg~i~iw 401 (540)
| +.|..+|..+++..|..+...... ...++. +... .+|+ .++.++.+|.++++
T Consensus 273 ~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~l 351 (582)
T 1flg_A 273 WARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVV 351 (582)
T ss_dssp GGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEE
T ss_pred cccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEE
Confidence 2 589999999999876554321110 111121 1221 4674 78889999999999
Q ss_pred ECCCCCeeeeeccCcc---EE-------------------------------------------EEeecCCCCCceEEEE
Q 009203 402 DAGVGRADFKHQIESK---CM-------------------------------------------SVLPNPCDFNLFMVQT 435 (540)
Q Consensus 402 d~~~~~~~~~~~~~~~---~~-------------------------------------------~~~~~~~~~~~~~l~~ 435 (540)
|..+|+.+........ .. .++++|... .+++.
T Consensus 352 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g--~~yv~ 429 (582)
T 1flg_A 352 DRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG--LFYVP 429 (582)
T ss_dssp ETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC--CEEEE
T ss_pred ECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC--EEEEe
Confidence 9999998765433210 00 112233221 12221
Q ss_pred E--------------------------------cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE
Q 009203 436 G--------------------------------TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT 483 (540)
Q Consensus 436 ~--------------------------------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 483 (540)
. ..+|.|..||+.+++....... . .++..-.....+.+++
T Consensus 430 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~---~-----~~~~~g~~~tagglvf 501 (582)
T 1flg_A 430 ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE---H-----LPLWAGVLATAGNLVF 501 (582)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE---S-----SCCCSCCEEETTTEEE
T ss_pred chhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC---C-----CCCcccceEeCCCEEE
Confidence 1 1357899999998875433211 0 1111111122467888
Q ss_pred EEeCCCcEEEEeccCCCCcccccccccccce-eEEEEcCCCC-EEEEE
Q 009203 484 SGSADPVIHLFDIRYSANKPSQSIRAHQKRV-FKAVWHYSHP-LLISI 529 (540)
Q Consensus 484 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i-~~l~~s~~~~-~l~s~ 529 (540)
.|+.||.++.||..+ ++.+-.+....+.+ .-+.|..+|+ |+++.
T Consensus 502 ~g~~dg~l~A~D~~t--G~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 502 TGTGDGYFKAFDAKS--GKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCcEEEEECCC--CCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 899999999999998 77777666433221 2266667886 44444
No 265
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.50 E-value=6.4e-05 Score=73.66 Aligned_cols=246 Identities=6% Similarity=-0.022 Sum_probs=139.3
Q ss_pred CceEEEEEecC--CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC--
Q 009203 224 RKLRSLSLNPV--NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD-- 299 (540)
Q Consensus 224 ~~V~~l~~spd--~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d-- 299 (540)
....+|+|+|+ ++.++++-.. +.|+.++..++... .+. ........++|+++|+++++. ..+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~-~~~--------~~~~~P~giavd~dG~lyVad----~~~~~ 204 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVD-IKT--------TNIGQCADVNFTLNGDMVVVD----DQSSD 204 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEE-EEC--------CCCSCEEEEEECTTCCEEEEE----CCSCT
T ss_pred CCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEE-Eee--------cCCCCccEEEECCCCCEEEEc----CCCCc
Confidence 45679999983 3555554333 88999998765432 221 123447899999999944443 211
Q ss_pred -C-eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 300 -S-QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 300 -~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
. .+...+...+... ...+.. ......++++|.++.++++-..++.|+.+|..++... ..+...+.....
T Consensus 205 ~~~gv~~~~~~~~~~~--~~~~~~----~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~---~~~~~~~~~~~~ 275 (433)
T 4hw6_A 205 TNTGIYLFTRASGFTE--RLSLCN----ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT---EEEVMMDTKGSN 275 (433)
T ss_dssp TSEEEEEECGGGTTCC--EEEEEE----CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE---EEEEECSCCSSC
T ss_pred ccceEEEEECCCCeec--cccccc----cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE---EEEeccCCCCCc
Confidence 1 2333443322110 011111 1336678899856666666666788999999866521 112111222233
Q ss_pred eEEEeccCCCEEEE-EeCCCeEEEEECC--CCCee----e-ee-cc------------CccEEEEee---------cCCC
Q 009203 378 MGVAGMQQKQIVLS-AGADKRIIGFDAG--VGRAD----F-KH-QI------------ESKCMSVLP---------NPCD 427 (540)
Q Consensus 378 ~~l~~s~~~~~l~~-~~~dg~i~iwd~~--~~~~~----~-~~-~~------------~~~~~~~~~---------~~~~ 427 (540)
..++|+|+|+.|+. -...+.|+.++.. ++... . .. .. -.....+++ .+.+
T Consensus 276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g 355 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY 355 (433)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC
Confidence 47999999995554 4557889998865 23211 1 10 00 112445666 3433
Q ss_pred CCceEEEEEcCCCeEEEEECCCCcceeeeecccc-----------ccCccccCeEEEEEc-CCCCEEEEEeCCCcEEEEe
Q 009203 428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ-----------ESSESQSALINQSWS-PDGLYITSGSADPVIHLFD 495 (540)
Q Consensus 428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~s-p~g~~l~sg~~dg~i~iwd 495 (540)
.++++-...+.|+.++.. +. .....+... .....-.....|+++ ++|.++++-..++.|+.++
T Consensus 356 ---~lyvaD~~n~~I~~~~~~-G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 356 ---DFYFCDRDSHTVRVLTPE-GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp ---EEEEEETTTTEEEEECTT-SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred ---cEEEEECCCCEEEEECCC-CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 567777778899999853 32 222221100 001112357889999 6777777766778888887
Q ss_pred cc
Q 009203 496 IR 497 (540)
Q Consensus 496 ~~ 497 (540)
++
T Consensus 431 ~e 432 (433)
T 4hw6_A 431 PE 432 (433)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=0.00029 Score=67.92 Aligned_cols=238 Identities=10% Similarity=-0.043 Sum_probs=143.5
Q ss_pred ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203 225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV 304 (540)
Q Consensus 225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v 304 (540)
.-+|.+..+ .+.++++ ....|+..++....... +. .....+..++|++.+..|+.+ +...+.|..
T Consensus 78 ~~~C~~~~~-~~~l~~~--~~~~I~~i~~~~~~~~~-~~--------~~~~~~~gl~~d~~~~~ly~~---D~~~~~I~r 142 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFA--NRIDIRQVLPHRSEYTL-LL--------NNLENAIALDFHHRRELVFWS---DVTLDRILR 142 (386)
T ss_dssp SSCEEECSS-CCEEEEE--CBSCEEEECTTSCCCEE-EE--------CSCSCEEEEEEETTTTEEEEE---ETTTTEEEE
T ss_pred CCeECCccc-cceeEee--cCccceeeccCCCcEEE-Ee--------cCCCccEEEEEecCCCeEEEE---eCCCCcEEE
Confidence 345666555 2443333 33568888887654322 21 112347789999866655544 167889999
Q ss_pred EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203 305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 384 (540)
+++.... ....+.. .......+++.+..+.++++-...+.|.+.++..... ..+. .........+++.|
T Consensus 143 ~~~~g~~---~~~~~~~---~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~----~~l~-~~~l~~P~giavdp 211 (386)
T 3v65_B 143 ANLNGSN---VEEVVST---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR----KVLL-WQSLEKPRAIALHP 211 (386)
T ss_dssp EETTSCC---EEEEECS---SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC----EEEE-CSSCSCEEEEEEET
T ss_pred EecCCCC---cEEEEeC---CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce----EEee-cCCCCCCcEEEEEc
Confidence 9988542 2222221 1234678899874566666666678899999876542 2222 22335678999998
Q ss_pred CCCEEEEEe-CC-CeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203 385 QKQIVLSAG-AD-KRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ 461 (540)
Q Consensus 385 ~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 461 (540)
.+..|+... .. +.|..+++......... ..-.....++++|.+. .++++-+..+.|..+|+........ +
T Consensus 212 ~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~-~---- 284 (386)
T 3v65_B 212 MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR--RMYWVDAKHHVIERANLDGSHRKAV-I---- 284 (386)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGT--EEEEEETTTTEEEEECTTSCSCEEE-E----
T ss_pred CCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCC--EEEEEECCCCEEEEEeCCCCeeEEE-E----
Confidence 766655554 34 68999998754332222 2234567888887543 4566667778999999875432211 1
Q ss_pred ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
........++++. .+.++++....+.|..++..+
T Consensus 285 --~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 285 --SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp --CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred --ECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCC
Confidence 1123356778883 455666666778888888544
No 267
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=0.00016 Score=77.06 Aligned_cols=281 Identities=10% Similarity=0.024 Sum_probs=164.9
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc--cCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD--CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
...|.++...++ |. |..|+.++-|..|+....... .+..... .........|.++...++|.+.+ | +.++
T Consensus 312 ~~~v~~i~~D~~-g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-g----t~~~ 383 (781)
T 3v9f_A 312 NASARYIFQDSF-NN-IWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI-G----TDGG 383 (781)
T ss_dssp SSCEEEEEECSS-CC-EEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECTTSCEEE-E----EBSS
T ss_pred CCeEEEEEEeCC-CC-EEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcCCCCEEE-E----eCCC
Confidence 467999999885 55 556676777888887754421 1211000 00011235688898888776544 4 4556
Q ss_pred eEEEEecCCCCCceeEEeecC-CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec-ccCCccee
Q 009203 301 QISVLNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR-NLHSSAVM 378 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~ 378 (540)
-|..||..++ ....+.. .......|.++...+ ++.+ ..|+.++-|..+|..+++. ..+.. ......|.
T Consensus 384 Gl~~~~~~~~----~~~~~~~~~~~~~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~----~~~~~~~~~~~~v~ 453 (781)
T 3v9f_A 384 GINVFENGKR----VAIYNKENRELLSNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLKKF----QIIELEKNELLDVR 453 (781)
T ss_dssp CEEEEETTEE----EEECC-----CCCSBEEEEEECT-TSCE-EEEETTEEEEEECSSSCEE----EECCSTTTCCCCEE
T ss_pred cEEEEECCCC----eEEEccCCCCCCCcceEEEEECC-CCCE-EEEeccCCEEEEcCCCCcE----EEeccCCCCCCeEE
Confidence 6888887653 1221110 011235688998876 6654 4567667799999877652 22211 11346789
Q ss_pred EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc------CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI------ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
++...++|.+.+ |+. +-|.+||..+++....... ...+.++..++.+ .|..|+.++.+..||..+...
T Consensus 454 ~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 454 VFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG----RFWIGTFGGGVGIYTPDMQLV 527 (781)
T ss_dssp EEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC----CEEEEESSSCEEEECTTCCEE
T ss_pred EEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC----CEEEEEcCCCEEEEeCCCCeE
Confidence 998887776544 555 5688999887665332211 3467788877766 344555545588888876542
Q ss_pred eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCEEEEEEc
Q 009203 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
.. +..... -....|.++..+++|.+.++. .+|.|..||..+..........+ ....|.++...++|.+.+++ .
T Consensus 528 ~~--~~~~~~--l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~ 601 (781)
T 3v9f_A 528 RK--FNQYEG--FCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-N 601 (781)
T ss_dssp EE--ECTTTT--CSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-S
T ss_pred EE--ccCCCC--CCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-C
Confidence 21 111111 124578999999998866554 46754888887532111111111 12367889998888866654 4
Q ss_pred CC
Q 009203 532 DL 533 (540)
Q Consensus 532 dg 533 (540)
+|
T Consensus 602 ~G 603 (781)
T 3v9f_A 602 TG 603 (781)
T ss_dssp SC
T ss_pred Cc
Confidence 55
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.49 E-value=0.00013 Score=74.37 Aligned_cols=209 Identities=10% Similarity=0.005 Sum_probs=112.8
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCC-ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW-PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA 314 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~ 314 (540)
+.+++ ++.++.|.-+|..+++.+.++.............. ...+++ .+..++.+ +.++.|..+|..+++...
T Consensus 69 g~vyv-~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~----t~dg~l~AlD~~TG~~~W 141 (582)
T 1flg_A 69 GVIYV-TASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFG----TLDASVVALNKNTGKVVW 141 (582)
T ss_dssp TEEEE-EETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEE----ETTTEEEEEESSSCCEEE
T ss_pred CEEEE-EcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEE----eCCCEEEEEECCCCCEEe
Confidence 44444 44433488888888887766643221100000000 012233 24566776 789999999999984322
Q ss_pred eEEeecCCCCccccee-EEEEeC--CCCC-EEEEEe------cCCcEEEEecCCCCCccccceeec--------------
Q 009203 315 CVTFLDDKPHVKGIIN-SIIFLP--WENP-CFATGG------SDHAVVLWSERDAEDSWKPKALHR-------------- 370 (540)
Q Consensus 315 ~~~~~~~~~~~~~~v~-~~~~~p--~~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~-------------- 370 (540)
....-.. . ....+. ...+.. .+++ .+++++ .++.|+-+|..+++.+|.......
T Consensus 142 ~~~~~~~-~-~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g 219 (582)
T 1flg_A 142 KKKFADH-G-AGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTG 219 (582)
T ss_dssp EEECSCG-G-GTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESS
T ss_pred eecCCCC-C-cCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccc
Confidence 2221110 0 000011 111111 1233 555554 378999999999998775432100
Q ss_pred -c---------------------cCCcceeEEEeccCCCEEEEEeC--------------------C----CeEEEEECC
Q 009203 371 -N---------------------LHSSAVMGVAGMQQKQIVLSAGA--------------------D----KRIIGFDAG 404 (540)
Q Consensus 371 -~---------------------~~~~~v~~l~~s~~~~~l~~~~~--------------------d----g~i~iwd~~ 404 (540)
. +....-..+++.|+..+++.++. | +.|..+|..
T Consensus 220 ~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~ 299 (582)
T 1flg_A 220 DVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPS 299 (582)
T ss_dssp CTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTT
T ss_pred ccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCC
Confidence 0 00001124567777778877663 2 589999999
Q ss_pred CCCeeeeeccCcc----------EEEEeec-CCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 405 VGRADFKHQIESK----------CMSVLPN-PCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 405 ~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
+|+.+..++.... ..-+... .++....+++.++.+|.++++|..+++..
T Consensus 300 TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 300 SGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp TCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 9999876543211 1111111 22211137888999999999999988754
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.48 E-value=0.00029 Score=66.94 Aligned_cols=232 Identities=11% Similarity=-0.013 Sum_probs=136.8
Q ss_pred eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203 278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER 357 (540)
Q Consensus 278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 357 (540)
+|.+..++ .+|+.+ ....|+..++... ........ ...+..++|++.++.++++-...+.|..+++.
T Consensus 37 ~C~~~~~~-~~ll~~-----~~~~I~~i~~~g~---~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~ 103 (349)
T 3v64_C 37 SCKALGPE-PVLLFA-----NRIDIRQVLPHRS---EYTLLLNN----LENAIALDFHHRRELVFWSDVTLDRILRANLN 103 (349)
T ss_dssp CEEESSSC-CEEEEE-----CBSCEEEECTTSC---CEEEEECS----CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cccccccC-ceeEee-----cccceEEEeCCCC---eeEEeecC----CCceEEEEEeccccEEEEEeccCCceEEEecC
Confidence 34444453 355553 4456888888753 22222322 23488999998456566666677889999998
Q ss_pred CCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEE
Q 009203 358 DAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQT 435 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 435 (540)
+... ..+.. ........+++.+.+ .++++-...+.|.++++......... ..-.....++++|.+. .++++
T Consensus 104 g~~~----~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g--~ly~t 176 (349)
T 3v64_C 104 GSNV----EEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--TIYWT 176 (349)
T ss_dssp SCSC----EEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT--EEEEE
T ss_pred CCCc----eEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC--eEEEe
Confidence 7652 22211 122446788998754 45555566789999998754432222 2234567888888552 45555
Q ss_pred EcCC-CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccc
Q 009203 436 GTPG-RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKR 513 (540)
Q Consensus 436 ~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 513 (540)
-... +.|..+++........ ....-.....++|+|++..|..+ ...+.|..++++.. .....+......
T Consensus 177 d~~~~~~I~r~~~dG~~~~~~-------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~--~~~~~~~~~~~~ 247 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSGRRII-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVISQGLPH 247 (349)
T ss_dssp ECSSSCEEEEEETTSCSCEES-------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSSCSS
T ss_pred ccCCCCEEEEEeCCCCCcEEE-------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC--ceEEEEeCCCCC
Confidence 5555 8899999875432211 11223457899999876665554 45678999998742 111112222334
Q ss_pred eeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 514 VFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 514 i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
..+|++ ..+.++++-...+.|..++
T Consensus 248 P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 248 PFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred ceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 567777 3444555555556665543
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=4.9e-05 Score=74.45 Aligned_cols=242 Identities=8% Similarity=0.047 Sum_probs=140.6
Q ss_pred CCceeEEEec-CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CC---
Q 009203 275 RWPEDIAWHP-QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DH--- 349 (540)
Q Consensus 275 ~~V~~~~~~~-~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg--- 349 (540)
.....++|+| ++..|+++ ...+.|+.+|+..+ ....... .......|+|++ +++.|+.+.. ++
T Consensus 137 ~~P~~lavdp~~~g~Lyv~----d~~~~I~~id~~~~---~v~~~~~----~~~~P~~ia~d~-~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLV----GEQHPTRLIDFEKE---YVSTVYS----GLSKVRTICWTH-EADSMIITNDQNNNDR 204 (430)
T ss_dssp SCCCEEEEETTEEEEEEEE----EBTEEEEEEETTTT---EEEEEEC----CCSCEEEEEECT-TSSEEEEEECCSCTTS
T ss_pred CCCCEEEECCCCCCeEEEE----eCCCcEEEEECCCC---EEEEEec----CCCCcceEEEeC-CCCEEEEEeCCCCccc
Confidence 3467899998 45556665 33388999999864 2222222 134588999999 8885555443 22
Q ss_pred -cEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecC
Q 009203 350 -AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNP 425 (540)
Q Consensus 350 -~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~ 425 (540)
.+.+++. .+.... ...+. ......+++++| +|.++++-..++.|..||...+..... .........++++|
T Consensus 205 ~~v~~~~~-~g~~~~-~~~l~---~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p 279 (430)
T 3tc9_A 205 PNNYILTR-ESGFKV-ITELT---KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP 279 (430)
T ss_dssp EEEEEEEG-GGTSCS-EEEEE---ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT
T ss_pred ceEEEEeC-CCceee-eeeec---cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC
Confidence 2333443 332210 01121 123467889999 677777766788999999987654222 22234567899999
Q ss_pred CCCCceEEEEEcCCCeEEEEECCCCcce----eeeecc---cccc-----CccccCeE-EEEEc--------CCCCEEEE
Q 009203 426 CDFNLFMVQTGTPGRQLRLYDIRLRQTE----IHAFGW---KQES-----SESQSALI-NQSWS--------PDGLYITS 484 (540)
Q Consensus 426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~----~~~~~~---~~~~-----~~~~~~v~-~~~~s--------p~g~~l~s 484 (540)
++. .++++-...+.|..++....... ....+. .... ...-.... .++.. ++|.++++
T Consensus 280 dG~--~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva 357 (430)
T 3tc9_A 280 SGN--YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC 357 (430)
T ss_dssp TSS--EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred CCC--EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE
Confidence 872 25666677889999887642110 111110 0000 00112234 55653 45666666
Q ss_pred EeCCCcEEEEeccCCCCccccccccc------------------ccceeEEEEcCC-CCEEEEEEcCCcEEEEe
Q 009203 485 GSADPVIHLFDIRYSANKPSQSIRAH------------------QKRVFKAVWHYS-HPLLISISSDLNIGLHK 539 (540)
Q Consensus 485 g~~dg~i~iwd~~~~~~~~~~~~~~h------------------~~~i~~l~~s~~-~~~l~s~~~dg~v~iw~ 539 (540)
-...+.|+.++.. +... ++.+. -.....|+++++ +.++++-..+..|+.++
T Consensus 358 D~~n~~I~~i~~~---G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 358 DRENHCIRILTPQ---GRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp EGGGTEEEEECTT---SEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred ECCCcEEEEECCC---CcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 6677888888843 3221 11111 125789999994 66667666778888765
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.45 E-value=6.5e-05 Score=66.09 Aligned_cols=187 Identities=9% Similarity=0.040 Sum_probs=116.1
Q ss_pred cceeEEEEeCCCCCEEEEEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203 327 GIINSIIFLPWENPCFATGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG 404 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~ 404 (540)
.....+.|++ +.++.+.+.+| .|+.+|+.+++.. ..+....+ ..-..+++. ++.+....-.++.+.+||..
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~---~~~~l~~~-~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRIL---QRAEVPPP-YFGAGIVAW-RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEE---EEEECCTT-CCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEE---EEEeCCCC-cceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence 4577899985 55666666654 8999999999852 22221111 111234443 23444444568899999999
Q ss_pred CCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc-cccCeEEEEEcCCCCEEE
Q 009203 405 VGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE-SQSALINQSWSPDGLYIT 483 (540)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~ 483 (540)
+.+.+..+........++... ..|+.+..++.|.++|..+.+..... ... ..+ --..++.+.|. +|...+
T Consensus 94 tl~~~~ti~~~~~Gwglt~dg-----~~L~vSdgs~~l~~iDp~t~~~~~~I-~V~--~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 94 TLTPRARFRYPGEGWALTSDD-----SHLYMSDGTAVIRKLDPDTLQQVGSI-KVT--AGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp TTEEEEEEECSSCCCEEEECS-----SCEEEECSSSEEEEECTTTCCEEEEE-ECE--ETTEECCCEEEEEEE-TTEEEE
T ss_pred cCcEEEEEeCCCCceEEeeCC-----CEEEEECCCCeEEEEeCCCCeEEEEE-EEc--cCCcccccceeeEEe-CCEEEE
Confidence 999888776665555666543 23444455889999999987643322 110 001 01245566665 676665
Q ss_pred EEeCCCcEEEEeccCCCCcccccccc-------------cccceeEEEEcCCCCEEEEEEc
Q 009203 484 SGSADPVIHLFDIRYSANKPSQSIRA-------------HQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 484 sg~~dg~i~iwd~~~~~~~~~~~~~~-------------h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
....+..|.+.|..+ ++.+..+.. -....+.|+|+|+++.|+..+.
T Consensus 165 nvw~s~~I~vIDp~t--G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDPAS--GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECTTT--CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEECCC--CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 555678899999988 555554431 1235689999998876666653
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.44 E-value=0.00035 Score=65.37 Aligned_cols=224 Identities=10% Similarity=-0.058 Sum_probs=129.1
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
....|+..|+.+... ...+.. ...+.+++|++.++.++++-..++.|..+++.+.........+. .......
T Consensus 8 ~~~~I~~i~~~~~~~---~~~~~~----~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p 79 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEY---TSLIPN----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAP 79 (316)
T ss_dssp CBSSEEEEETTSCCC---EEEECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCC
T ss_pred CCCeEEEEECCCcce---EehhcC----CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-eCCCCCc
Confidence 456789999987532 233332 24578999998445566666667899999987621000012221 1122456
Q ss_pred eEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCC-CeEEEEECCCCccee
Q 009203 378 MGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPG-RQLRLYDIRLRQTEI 454 (540)
Q Consensus 378 ~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~ 454 (540)
..+++.+.+ +++++-...+.|.++|+.......... .......++.+|.+. .++++.... +.|..+++.......
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g--~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--EEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC--EEEEEccCCCCeEEEEcCCCCCeEE
Confidence 788998654 445555667899999987544322222 234667888887552 344444433 789888886443211
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
. . ...-.....+++++++..|+.+ +..+.|..+|++....+.+............|++. .+.++++....+
T Consensus 158 ~-~------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 158 L-V------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp E-E------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred E-E------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 1 0 1123467899999977666555 45678999999842222222111122345677774 355555555666
Q ss_pred cEEEEe
Q 009203 534 NIGLHK 539 (540)
Q Consensus 534 ~v~iw~ 539 (540)
.|..++
T Consensus 230 ~V~~~~ 235 (316)
T 1ijq_A 230 AIFSAN 235 (316)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 776654
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.44 E-value=0.00015 Score=71.00 Aligned_cols=242 Identities=6% Similarity=0.005 Sum_probs=143.8
Q ss_pred CCceeEEEecC--CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC---C
Q 009203 275 RWPEDIAWHPQ--GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD---H 349 (540)
Q Consensus 275 ~~V~~~~~~~~--~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g 349 (540)
.....++|+|+ +..|+.+ ...+.|+.+|..++ ....... ......+++|++ +++++++.... .
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~----D~~~~I~~id~~~g---~v~~~~~----~~~~P~giavd~-dG~lyVad~~~~~~~ 206 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV----GQRDAFRHVDFVNQ---YVDIKTT----NIGQCADVNFTL-NGDMVVVDDQSSDTN 206 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE----CBTSCEEEEETTTT---EEEEECC----CCSCEEEEEECT-TCCEEEEECCSCTTS
T ss_pred CCCceEEEccccCCCEEEEE----eCCCCEEEEECCCC---EEEEeec----CCCCccEEEECC-CCCEEEEcCCCCccc
Confidence 44678999984 4456655 44489999999765 2233322 134588999999 88855554321 1
Q ss_pred -cEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCee-ee--eccCccEEEEeec
Q 009203 350 -AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRAD-FK--HQIESKCMSVLPN 424 (540)
Q Consensus 350 -~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~-~~--~~~~~~~~~~~~~ 424 (540)
.+..++...+.. . ...+. .......++++| +|.++++-..++.|+.+|..++... .. .........++++
T Consensus 207 ~gv~~~~~~~~~~-~-~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~d 281 (433)
T 4hw6_A 207 TGIYLFTRASGFT-E-RLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWH 281 (433)
T ss_dssp EEEEEECGGGTTC-C-EEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEEC
T ss_pred ceEEEEECCCCee-c-ccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEe
Confidence 233333322210 0 01111 234567789999 6776666667889999999877652 11 1222233468899
Q ss_pred CCCCCceEEEEEcCCCeEEEEECCC--Ccc--eeeeecc---ccc-----cCccccCeEEEEE---------cCCCCEEE
Q 009203 425 PCDFNLFMVQTGTPGRQLRLYDIRL--RQT--EIHAFGW---KQE-----SSESQSALINQSW---------SPDGLYIT 483 (540)
Q Consensus 425 ~~~~~~~~l~~~~~dg~v~i~d~~~--~~~--~~~~~~~---~~~-----~~~~~~~v~~~~~---------sp~g~~l~ 483 (540)
|++. .++++-...+.|+.+++.. +.. .....+. ... ....-.....+++ .++|.+++
T Consensus 282 pdG~--~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyv 359 (433)
T 4hw6_A 282 PTGD--WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYF 359 (433)
T ss_dssp TTSS--EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred CCCC--EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEE
Confidence 9872 2556667778999988763 211 0111110 000 0011234778999 77888888
Q ss_pred EEeCCCcEEEEeccCCCCcccccccc------------------cccceeEEEEc-CCCCEEEEEEcCCcEEEEe
Q 009203 484 SGSADPVIHLFDIRYSANKPSQSIRA------------------HQKRVFKAVWH-YSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 484 sg~~dg~i~iwd~~~~~~~~~~~~~~------------------h~~~i~~l~~s-~~~~~l~s~~~dg~v~iw~ 539 (540)
+-...+.|+.++.. +... ++.+ .-.....|+++ ++|.++++-..++.|+.++
T Consensus 360 aD~~n~~I~~~~~~---G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 360 CDRDSHTVRVLTPE---GRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp EETTTTEEEEECTT---SEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred EECCCCEEEEECCC---CCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 77778899999854 3221 1111 11246889999 6777777777788888775
No 274
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.43 E-value=0.00095 Score=60.62 Aligned_cols=259 Identities=10% Similarity=0.080 Sum_probs=152.3
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH 324 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 324 (540)
+..|.|-|+..+....+.... --+.-.+|..+.||.- ....+++||+++. ..+....-
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~-----------AdsAIMnP~~~ViALr-----ag~~LQiFnletK---~klks~~~--- 105 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALK-----AGKTLQIFNIEMK---SKMKAHTM--- 105 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC-----------CSEEEECSSSSEEEEE-----ETTEEEEEETTTT---EEEEEEEC---
T ss_pred CCEEEEEECCCCCCccccccc-----------cceeeeCCCccEEEEe-----cCCeEEEechHHh---hhhcceec---
Confidence 347899999887654332211 1245678988888775 4788999999985 44554442
Q ss_pred cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec--ccCCcceeEEEeccCCCEEEEEeC-------C
Q 009203 325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR--NLHSSAVMGVAGMQQKQIVLSAGA-------D 395 (540)
Q Consensus 325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~~-------d 395 (540)
...|.-=.|- +.+.|+..+ +..|+-|++..... ..+.+.+ .-....|.....+++.++++..+- .
T Consensus 106 -~e~VvfWkWi--s~~~L~lVT-~taVyHWs~~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~ 179 (365)
T 2xzh_A 106 -TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 179 (365)
T ss_dssp -SSCEEEEEEC--SSSEEEEEE-SSEEEEEESSTTCC--CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEE
T ss_pred -CCccEEEEec--CCCeEEEEc-CCcEEEEcccCCCC--CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccc
Confidence 2457777786 445555555 46799999976332 1223322 112456777788899998876543 3
Q ss_pred CeEEEEECCCCCeeeeeccCccEEEE---eecCCCCCceEEEEEc---CCCeEEEEECCCC---ccee--eeeccccccC
Q 009203 396 KRIIGFDAGVGRADFKHQIESKCMSV---LPNPCDFNLFMVQTGT---PGRQLRLYDIRLR---QTEI--HAFGWKQESS 464 (540)
Q Consensus 396 g~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~---~~~~--~~~~~~~~~~ 464 (540)
|.+.+|..+.+..-. . ++++.++ ..........+++.+. ..+.+++.++... .... ..........
T Consensus 180 G~mQLYS~er~~sQ~-i--eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppe 256 (365)
T 2xzh_A 180 GAMQLYSVDRKVSQP-I--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 256 (365)
T ss_dssp EEEEEEETTTTEEEE-E--CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTT
T ss_pred eeEEEEeecccccce-e--eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcc
Confidence 678899988654322 1 2222222 2211111112333332 2368999998543 1111 0110001112
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203 465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG 536 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~ 536 (540)
....-..++..|+....+..-+.-|.|++||+.+ +.++..-+-....|..-+-+....=++.....|.|.
T Consensus 257 a~~DFPVamqvs~kygviyviTK~G~ihlyDleT--gt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 257 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET--GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred ccCCceEEEEecccCCEEEEEeCCcEEEEEEccc--CcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 2345577889999888999999999999999998 676665555555665555544433344444556543
No 275
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.00055 Score=72.93 Aligned_cols=288 Identities=11% Similarity=0.051 Sum_probs=164.8
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~ 303 (540)
..|.++...++ +.+.+ |+.+ -+.+||..++.... +..............|.++...++|.+.+. +..+-|.
T Consensus 211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-----t~~~Gl~ 281 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNANTETFTN-FHNNPGNIHGALSSYIFSIKQLKDNKLWIA-----TELNGIM 281 (781)
T ss_dssp SSEEEEEECTT-CCEEE-EETT-EEEEEETTTTEEEC------------CCCCEEEEEECTTSEEEEE-----ESSSCEE
T ss_pred CceeEEEEcCC-CCEEE-EeCC-cHheECCCCCcEEE-EEcCCCccccccCceEEEEEECCCCCEEEE-----eCCCCeE
Confidence 56999998874 66544 4445 58889977653211 111000000112356888988888765554 4545688
Q ss_pred EEecCCCCCceeEE-------eec-CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee------
Q 009203 304 VLNLNKTKGRACVT-------FLD-DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH------ 369 (540)
Q Consensus 304 vwd~~~~~~~~~~~-------~~~-~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 369 (540)
++|..+........ ... ...-....|.++...+ ++. |-.|+.++-|..|+...... ..+.
T Consensus 282 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~----~~~~~~~~~~ 355 (781)
T 3v9f_A 282 ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTF----HTWSYSPTQM 355 (781)
T ss_dssp EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSC----EEEC----CC
T ss_pred EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcc----eeeccCcccc
Confidence 88887642111110 000 0111235689998887 665 55677677799999876542 2221
Q ss_pred --cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee----ccCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203 370 --RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH----QIESKCMSVLPNPCDFNLFMVQTGTPGRQLR 443 (540)
Q Consensus 370 --~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 443 (540)
.......|.++...++|.+ ..|+.++-|..||..++...... .....+.++..++.+ .|..|+.++.+.
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g----~lWigt~~~Gl~ 430 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG----NLWFGTYLGNIS 430 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS----CEEEEETTEEEE
T ss_pred ccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC----CEEEEeccCCEE
Confidence 0113456899998877764 45666666889998765432211 123457777777665 455577777899
Q ss_pred EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEc
Q 009203 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWH 520 (540)
Q Consensus 444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s 520 (540)
.||..++....... . ......|.++..+++|.+.+. +. +-|..||..+.......... .....|.++...
T Consensus 431 ~~~~~~~~~~~~~~----~-~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 431 YYNTRLKKFQIIEL----E-KNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp EECSSSCEEEECCS----T-TTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred EEcCCCCcEEEecc----C-CCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence 99987654321110 0 113457899999888875554 44 45889998763222111111 113578999999
Q ss_pred CCCCEEEEEEcCCcEEEEe
Q 009203 521 YSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 521 ~~~~~l~s~~~dg~v~iw~ 539 (540)
++|.+.+....+| |..|+
T Consensus 504 ~~g~lWigt~~~G-l~~~~ 521 (781)
T 3v9f_A 504 SEGRFWIGTFGGG-VGIYT 521 (781)
T ss_dssp TTCCEEEEESSSC-EEEEC
T ss_pred CCCCEEEEEcCCC-EEEEe
Confidence 9988766554345 44443
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.40 E-value=0.0018 Score=62.61 Aligned_cols=232 Identities=8% Similarity=-0.056 Sum_probs=138.9
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-ceeE
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-RACV 316 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-~~~~ 316 (540)
+|+.+. ...|+..++........+ .....+..++|++.+..|+.+ +...+.|..+++..... ....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~---------~~~~~~~~l~~d~~~~~lyws---D~~~~~I~~~~~~g~~~~~~~~ 151 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHGVSSYD 151 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE---------CSCSCEEEEEEETTTTEEEEE---ETTTTEEEEEEC------CCCE
T ss_pred eeEEec-cceeEEEccCCcceeEec---------cccCcceEEeeeeccCceEEE---ecCCCeEEEEEcccCCCCCcce
Confidence 444444 357888888765432221 123457899999876655554 16678899999875210 0112
Q ss_pred EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC--
Q 009203 317 TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-- 394 (540)
Q Consensus 317 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-- 394 (540)
..+.. .......+++.+..+.++++-...+.|.+.++..... ..+. .........|++.|.+..|+....
T Consensus 152 ~~~~~---~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~----~~l~-~~~~~~P~~iavdp~~g~ly~td~~~ 223 (400)
T 3p5b_L 152 TVISR---DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLF-RENGSKPRAIVVDPVHGFMYWTDWGT 223 (400)
T ss_dssp EEECS---SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE----EEEE-ECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred EEEeC---CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce----EEEE-eCCCCCcceEEEecccCeEEEEeCCC
Confidence 22221 1234788999874566666666778999999986542 2222 123345789999997666665543
Q ss_pred CCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE
Q 009203 395 DKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ 473 (540)
Q Consensus 395 dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~ 473 (540)
.+.|...++.......... .-.....+++++.+. .+.++-...+.|..+|+......... ..........++
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~~~l~~P~gl 296 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTIL-----EDEKRLAHPFSL 296 (400)
T ss_dssp SCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCCCEEEE-----ECSSTTSSEEEE
T ss_pred CCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCC--EEEEEECCCCEEEEEeCCCCccEEEE-----eCCCCCCCCEEE
Confidence 3689999987544322222 235677888987653 45556667789999999764432211 111122345677
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 474 SWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 474 ~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
++. .+.++++-...+.|..+|..+
T Consensus 297 ~v~-~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 297 AVF-EDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp EEE-TTEEEEEESSSCSEEEEESSS
T ss_pred EEe-CCEEEEecCCCCeEEEEEcCC
Confidence 773 344555666778898888655
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.40 E-value=0.00029 Score=67.93 Aligned_cols=231 Identities=11% Similarity=-0.028 Sum_probs=136.7
Q ss_pred eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC
Q 009203 279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD 358 (540)
Q Consensus 279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 358 (540)
+.+..+ ..+|+.+ ....|+.+++..... ...... ...+..++|++.++.++++-...+.|+.+++.+
T Consensus 81 C~~~~~-~~~l~~~-----~~~~I~~i~~~~~~~---~~~~~~----~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 81 CKALGP-EPVLLFA-----NRIDIRQVLPHRSEY---TLLLNN----LENAIALDFHHRRELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp EEECSS-CCEEEEE-----CBSCEEEECTTSCCC---EEEECS----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ECCccc-cceeEee-----cCccceeeccCCCcE---EEEecC----CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 444444 3355554 456788888876422 222322 234889999984566666666778899999987
Q ss_pred CCCccccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEE
Q 009203 359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTG 436 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 436 (540)
... ..+.. ........+++.+.+. ++++-...+.|.++++.......... .-.....++.+|.+. .++++-
T Consensus 148 ~~~----~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g--~ly~td 220 (386)
T 3v65_B 148 SNV----EEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--TIYWTD 220 (386)
T ss_dssp CCE----EEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT--EEEEEE
T ss_pred CCc----EEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC--eEEEec
Confidence 642 22211 1223457788887544 44555567789999987544322222 224567888887653 345555
Q ss_pred cCC-CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccce
Q 009203 437 TPG-RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKRV 514 (540)
Q Consensus 437 ~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~i 514 (540)
... +.|..+++......... ...-.....++|+|++..|+.+ +..+.|..++++.. .....+.......
T Consensus 221 ~~~~~~I~r~~~dG~~~~~~~-------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~~~~~P 291 (386)
T 3v65_B 221 WGNTPRIEASSMDGSGRRIIA-------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVISQGLPHP 291 (386)
T ss_dssp CSSSCEEEEEETTSCSCEEEE-------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC--SCEEEECSSCSSE
T ss_pred cCCCCEEEEEeCCCCCcEEEE-------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC--eeEEEEECCCCCc
Confidence 555 78999998754432211 1123357899999876665544 45678999998742 2111222223345
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 515 FKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.+|++ ..+.++++....+.|..++
T Consensus 292 ~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 292 FAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred eEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 77777 3445555555566666654
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.39 E-value=7.2e-06 Score=85.45 Aligned_cols=245 Identities=13% Similarity=-0.001 Sum_probs=130.9
Q ss_pred eEEEec-CCCeEEEEeecCCCCC-----------eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203 279 DIAWHP-QGNSLFSAHTADSGDS-----------QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG 346 (540)
Q Consensus 279 ~~~~~~-~~~~l~s~~~~~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 346 (540)
++++.+ ++++++.| +.+. .+.+||..++.-.... .+.. .+.....++++.+ ++.+++.|+
T Consensus 190 ~~av~~~~g~l~v~G----G~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~~~--~~~~~~~~~~~~~-~g~lyv~GG 261 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWS----SYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VTVT--KHDMFCPGISMDG-NGQIVVTGG 261 (656)
T ss_dssp EEEEETTTTEEEEEE----ECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EEEC--SCCCSSCEEEECT-TSCEEEECS
T ss_pred eEEEEecCCEEEEEe----cccccccccCCCCeEEEEEEeCCCCcEEeCc-ccCC--CCCCccccccCCC-CCCEEEeCC
Confidence 677787 88888877 3221 6889999877432222 2211 1223344577777 899999998
Q ss_pred c-CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CC-----CeEEEEECCCCCeeeeec-----c
Q 009203 347 S-DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-AD-----KRIIGFDAGVGRADFKHQ-----I 414 (540)
Q Consensus 347 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~-----~ 414 (540)
. +..+.+||..+... ..+........-.+++..++|++++.|+ .+ ..+.+||..+++-..... .
T Consensus 262 ~~~~~v~~yd~~t~~W----~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~ 337 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDSW----IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM 337 (656)
T ss_dssp SSTTCEEEEEGGGTEE----EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG
T ss_pred CCCCceEEecCcCCce----eECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc
Confidence 4 45799999987652 1111111122223455667899999988 34 468999998765332210 0
Q ss_pred CccEEEEeecCCCCCceEEEEEcCC---------CeEEEEECCCCcceeeeecccccc---CccccCeEEEEEcC-CCCE
Q 009203 415 ESKCMSVLPNPCDFNLFMVQTGTPG---------RQLRLYDIRLRQTEIHAFGWKQES---SESQSALINQSWSP-DGLY 481 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~d---------g~v~i~d~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp-~g~~ 481 (540)
........+..++ ..++.|+.+ ..+..||..+..-.. ..+..... ......-.++.|.. ++++
T Consensus 338 ~~~~~~~~~~~~~---~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~~~~~av~~~~~~~~i 413 (656)
T 1k3i_A 338 LTADKQGLYRSDN---HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDAMCGNAVMYDAVKGKI 413 (656)
T ss_dssp CCCCTTGGGTTTC---SCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCCBTCEEEEEETTTTEE
T ss_pred ccccccceeecCC---ceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCCCCCceEeccCCCCeE
Confidence 0000001111111 233444333 457788887654221 11100000 00011234455543 7888
Q ss_pred EEEEeCCC-----------cEEEEeccCCCCcccccccccccc-eeEEEEcCCCCEEEEEEcC-----------CcEEEE
Q 009203 482 ITSGSADP-----------VIHLFDIRYSANKPSQSIRAHQKR-VFKAVWHYSHPLLISISSD-----------LNIGLH 538 (540)
Q Consensus 482 l~sg~~dg-----------~i~iwd~~~~~~~~~~~~~~h~~~-i~~l~~s~~~~~l~s~~~d-----------g~v~iw 538 (540)
++.|+.++ .|.+||..+.....+..-..+... -.+++..|+|++++.||.+ ..+.+|
T Consensus 414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence 88887543 577888775221111100112222 2345667899999999865 457777
Q ss_pred e
Q 009203 539 K 539 (540)
Q Consensus 539 ~ 539 (540)
|
T Consensus 494 d 494 (656)
T 1k3i_A 494 V 494 (656)
T ss_dssp E
T ss_pred c
Confidence 6
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.36 E-value=0.0018 Score=60.49 Aligned_cols=225 Identities=8% Similarity=-0.048 Sum_probs=134.1
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-ceeEEeecCCCC
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-RACVTFLDDKPH 324 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~ 324 (540)
..|+..++........+ .....+.+++|++.+..|+.+ +..++.|..+++..... ......+..
T Consensus 10 ~~I~~i~~~~~~~~~~~---------~~~~~p~g~~~d~~~~~ly~~---D~~~~~I~~~~~~g~~~~~~~~~~~~~--- 74 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHGVSSYDTVISR--- 74 (316)
T ss_dssp SSEEEEETTSCCCEEEE---------CSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC--------CEEEECS---
T ss_pred CeEEEEECCCcceEehh---------cCCCceEEEEEEeCCCEEEEE---ECCCCcEEEEECCCCCCCcccEEEEeC---
Confidence 46888888876543222 112346789999876655554 16678999999875100 011222221
Q ss_pred cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C-CeEEEEE
Q 009203 325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D-KRIIGFD 402 (540)
Q Consensus 325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d-g~i~iwd 402 (540)
.-..+.++++.+.++.++++-...+.|.++++..... ..+. .........+++.|.+..|+.+.. . +.|..++
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~----~~~~-~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce----EEEE-ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 1134678999873555666666778999999876432 2222 123356789999986666555544 3 6899898
Q ss_pred CCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE
Q 009203 403 AGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY 481 (540)
Q Consensus 403 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 481 (540)
+........ ...-.....+++++++. .++++-+..+.|..+|+........ . ..........++++. .+.+
T Consensus 150 ~dG~~~~~~~~~~~~~P~gla~d~~~~--~lY~~D~~~~~I~~~d~dg~~~~~~-~----~~~~~~~~P~giav~-~~~l 221 (316)
T 1ijq_A 150 LNGVDIYSLVTENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTI-L----EDEKRLAHPFSLAVF-EDKV 221 (316)
T ss_dssp TTSCCEEEEECSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEE-E----ECTTTTSSEEEEEEE-TTEE
T ss_pred CCCCCeEEEEECCCCCceEEEEeccCC--EEEEEECCCCeEEEEecCCCceEEE-e----ecCCccCCcEEEEEE-CCEE
Confidence 864332211 12234677888887653 4556667778999999975432211 1 011112346778875 3555
Q ss_pred EEEEeCCCcEEEEeccC
Q 009203 482 ITSGSADPVIHLFDIRY 498 (540)
Q Consensus 482 l~sg~~dg~i~iwd~~~ 498 (540)
+++-...+.|..++..+
T Consensus 222 y~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 222 FWTDIINEAIFSANRLT 238 (316)
T ss_dssp EEEETTTTEEEEEETTT
T ss_pred EEEECCCCeEEEEeCCC
Confidence 66666678888888754
No 280
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.35 E-value=5.3e-05 Score=77.15 Aligned_cols=277 Identities=8% Similarity=0.021 Sum_probs=152.3
Q ss_pred EEEecCCCc---EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeecCC------C
Q 009203 229 LSLNPVNEQ---LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTADS------G 298 (540)
Q Consensus 229 l~~spd~~~---~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~~~------~ 298 (540)
++++|+++. .|+.++.|+.+..+|..+++........... .+ ..+.+ .... ++ .++++ + .
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~--~~--~~~~ssP~v~-~g-~V~vg----~~g~e~g~ 180 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK--VG--STLTIAPYVV-KD-KVIIG----SSGAELGV 180 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG--GT--CBCCSCCEEE-TT-EEEEC----CBCGGGTC
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC--cc--ceeecCCEEE-CC-EEEEE----ecccccCC
Confidence 556443232 2777888999999999999877665322100 00 01111 1121 34 45554 3 3
Q ss_pred CCeEEEEecCCCCCceeEEeecCCC------C-------------------------cccce-eEEEEeCCCCCEEEEEe
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKP------H-------------------------VKGII-NSIIFLPWENPCFATGG 346 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~------~-------------------------~~~~v-~~~~~~p~~~~~l~s~~ 346 (540)
++.|..+|..+++............ . -.+.+ ..+++.+ ...+++.+.
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~ 259 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence 7999999999984322222211000 0 00001 1456667 666777776
Q ss_pred cC----------------CcEEEEecCCCCCccccceeeccc-----CCcceeEEEec-cCC---CEEEEEeCCCeEEEE
Q 009203 347 SD----------------HAVVLWSERDAEDSWKPKALHRNL-----HSSAVMGVAGM-QQK---QIVLSAGADKRIIGF 401 (540)
Q Consensus 347 ~d----------------g~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~l~~s-~~~---~~l~~~~~dg~i~iw 401 (540)
.+ +.|..+|..+++..|..+...... ...++. +... .+| ..++.++.+|.++++
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 54 379999999999876655432110 111121 2222 467 567778999999999
Q ss_pred ECCCCCeeeeeccCc-------------c-E--------------------------EEEeecCCCCCceEEEEE-----
Q 009203 402 DAGVGRADFKHQIES-------------K-C--------------------------MSVLPNPCDFNLFMVQTG----- 436 (540)
Q Consensus 402 d~~~~~~~~~~~~~~-------------~-~--------------------------~~~~~~~~~~~~~~l~~~----- 436 (540)
|.++|+.+....... . + ..++++|.. .++++.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~---~~~yv~~~~~~ 415 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR---ELFFMGINHIC 415 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT---TEEEEEEECEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC---CEEEEeccccc
Confidence 999999876543211 0 0 012233322 111110
Q ss_pred ----------------------------c------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203 437 ----------------------------T------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI 482 (540)
Q Consensus 437 ----------------------------~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 482 (540)
+ ..|.|..||+.+++....... . .++.+-.+...+..+
T Consensus 416 ~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~-----~~~~~g~~~tagg~v 487 (599)
T 1w6s_A 416 MDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---R-----FAVWGGTMATAGDLV 487 (599)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---S-----SCCCSBCEEETTTEE
T ss_pred eeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---C-----CCccCcceEecCCEE
Confidence 1 357899999988875443210 0 111111122256788
Q ss_pred EEEeCCCcEEEEeccCCCCcccccccccccc-eeEEEEcCCCC-EEEEEE
Q 009203 483 TSGSADPVIHLFDIRYSANKPSQSIRAHQKR-VFKAVWHYSHP-LLISIS 530 (540)
Q Consensus 483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~-i~~l~~s~~~~-~l~s~~ 530 (540)
+.++.||.++.||..+ ++.+-.++...+. ..-+.|..+|+ |+++.+
T Consensus 488 f~gt~dg~l~A~D~~t--G~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 488 FYGTLDGYLKARDSDT--GDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp EEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEECCCCeEEEEECCC--CCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 8899999999999998 6766666533221 12355666886 454443
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.34 E-value=0.00014 Score=64.87 Aligned_cols=202 Identities=11% Similarity=0.027 Sum_probs=119.0
Q ss_pred ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC
Q 009203 326 KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV 405 (540)
Q Consensus 326 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 405 (540)
...+..++|+|.++.++++...++.|...|.. ++. ...+... .......|++.+++.++++.-.++.+.++++..
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---~~~i~l~-g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---IRTIPLD-FVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---EEEEECS-SCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---EEEEecC-CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 34699999999444455667778889999998 553 2222222 235678899998888777766778899998765
Q ss_pred CCee---eee-------ccCccEEEEeecCCCCCceEEEEEcCCC-eEEEEECCCCcceeeeecccc-ccCccccCeEEE
Q 009203 406 GRAD---FKH-------QIESKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIRLRQTEIHAFGWKQ-ESSESQSALINQ 473 (540)
Q Consensus 406 ~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~v~~~ 473 (540)
...+ ... ......-.++++|.+. .++++.-.+. .|+.|+-.............. ....+...+.++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~--~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH--TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT--EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCC--EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 4421 111 1123346888988763 2333333333 455555100111111110000 001123457899
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEeccCCCCccccccccc---------ccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 474 SWSPD-GLYITSGSADPVIHLFDIRYSANKPSQSIRAH---------QKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 474 ~~sp~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h---------~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
+++|. +.+++....+..|.++|.. ++++..+.-. -...-.|+|.++|++.++ ++...++++
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~---g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV---GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT---CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC---CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99995 5566677778889999987 4444433211 124578999999985555 666655554
No 282
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.34 E-value=0.0021 Score=60.76 Aligned_cols=262 Identities=10% Similarity=0.066 Sum_probs=155.2
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH 324 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 324 (540)
+..|.|-|+..+..+.+.... --+.-.+|..+.||.- ...+++|||+++. ..+....-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~-----------AdsAIMnP~~~iiALr-----ag~~lQiFnle~K---~klks~~~--- 104 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALK-----AGKTLQIFNIEMK---SKMKAHTM--- 104 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC-----------CSEEEECSSSSCEEEE-----ETTEEEEEETTTT---EEEEEEEC---
T ss_pred CCeEEEEECCCCCcceecccc-----------cceeeeCCCCcEEEEe-----cCCeEEEEchHHh---hhhcceec---
Confidence 347999999887654332221 1256678988888875 4889999999985 44444432
Q ss_pred cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc--cCCcceeEEEeccCCCEEEEEeC-------C
Q 009203 325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN--LHSSAVMGVAGMQQKQIVLSAGA-------D 395 (540)
Q Consensus 325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~-------d 395 (540)
...|.-=.|- +.+.|+..+ +..|+-|++.+... ..+.+.+. -....|.....+++.++++..+- .
T Consensus 105 -~e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~ 178 (494)
T 1bpo_A 105 -TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 178 (494)
T ss_dssp -SSCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEE
T ss_pred -CCCceEEEec--CCCeEEEEc-CCeeEEecccCCCC--chhheecchhcccceEEEEEECCCCCeEEEEeecccCCccc
Confidence 2346666776 345555554 46799999976332 12233321 12456777788899998876543 4
Q ss_pred CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCC---ccee--eeeccccccCccc
Q 009203 396 KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLR---QTEI--HAFGWKQESSESQ 467 (540)
Q Consensus 396 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~---~~~~--~~~~~~~~~~~~~ 467 (540)
|.+.+|..+.+..-....+......+..........+++.+.. .+.++|.++... .... ...........-.
T Consensus 179 G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 179 GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp EEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred ceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence 6789999886554222111111112222211111123333333 378999998643 1111 1111111112234
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203 468 SALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG 536 (540)
Q Consensus 468 ~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~ 536 (540)
.-..++..|+....+..-+.-|.|++||+.+ +.++..-+-...+|..-+-+....-++.....|.|.
T Consensus 259 DFPvamqvs~kygviyviTK~G~i~lyDleT--gt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLET--GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred CceeEEEecccCCEEEEEecCceEEEEeccc--ceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence 4577889999988999999999999999998 676665555555666555555444455555666553
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00071 Score=66.45 Aligned_cols=257 Identities=11% Similarity=0.065 Sum_probs=146.2
Q ss_pred CceEEEEEec-CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE-------ecCCCeEEEEeec
Q 009203 224 RKLRSLSLNP-VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW-------HPQGNSLFSAHTA 295 (540)
Q Consensus 224 ~~V~~l~~sp-d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-------~~~~~~l~s~~~~ 295 (540)
.....|+|+| +.++++++....+.|++.|...+... ++.... .+.......++| +++|+.|+++.
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~----~~~~~~p~~ia~~~~~~~~d~~G~~lyvad-- 211 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNIN----TIPTNRIRSIAFNKKIEGYADEAEYMIVAI-- 211 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCT----TSSCSBEEEEEECCCBTTTBCTTCEEEEEE--
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccC----ccccCCCcEEEEeecccccCCCCCEEEEEe--
Confidence 3578999998 34566666555567888888765432 222110 112345788999 99999666651
Q ss_pred CCCC------CeEEEEecCC-CCCc-----eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC------
Q 009203 296 DSGD------SQISVLNLNK-TKGR-----ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER------ 357 (540)
Q Consensus 296 ~~~d------~~i~vwd~~~-~~~~-----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~------ 357 (540)
..+ ..|.+++... +... ..+..+ .....++++|.++.++++-..++.|..+|+.
T Consensus 212 -~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 212 -DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI 283 (496)
T ss_dssp -CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred -CCCCCcccCceEEEEecCCCCceeecccceeeccC-------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence 222 2366666443 1111 122211 2356789999666667777788889999997
Q ss_pred -CCCCccc---------cceeecccCCcceeEEEeccCCCEE-EEEeCCCeEEEEECC--CCCe----ee-ee-ccC---
Q 009203 358 -DAEDSWK---------PKALHRNLHSSAVMGVAGMQQKQIV-LSAGADKRIIGFDAG--VGRA----DF-KH-QIE--- 415 (540)
Q Consensus 358 -~~~~~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~----~~-~~-~~~--- 415 (540)
++.. |. ...+...........|+|+|+|+.| ++-+....|+.+|.. .+.. .. .. ...
T Consensus 284 ~tg~~-~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~ 362 (496)
T 3kya_A 284 KNGGS-WDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR 362 (496)
T ss_dssp HTTCC-CCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCB
T ss_pred cCcee-ecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCccc
Confidence 5542 10 0111112233456899999999954 444567789986653 3321 11 11 000
Q ss_pred ---------ccEE-EEeec-CC---CCCceEEEEEcCCCeEEEEECCCCcceeeeecccc-----------------ccC
Q 009203 416 ---------SKCM-SVLPN-PC---DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ-----------------ESS 464 (540)
Q Consensus 416 ---------~~~~-~~~~~-~~---~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-----------------~~~ 464 (540)
.... .++.. +. ...+.++++-..++.|+.++. ++. .....+... ...
T Consensus 363 DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~ 440 (496)
T 3kya_A 363 DDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREV 440 (496)
T ss_dssp CCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTT
T ss_pred CCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhh
Confidence 1122 23332 10 012256677777889999984 332 222222100 000
Q ss_pred ccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccC
Q 009203 465 ESQSALINQSWSPD-GLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 465 ~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~ 498 (540)
..-.....|+++++ |.++++=..++.|+.+++..
T Consensus 441 a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 441 ARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp CCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred hhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 12245789999997 77777777788999999885
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.33 E-value=0.002 Score=60.02 Aligned_cols=224 Identities=7% Similarity=-0.083 Sum_probs=136.9
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH 324 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 324 (540)
...|+..++........+... ....+.+++|.+.+..|+.+ +...+.|..+++........+.. ..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-------~~~~~~~ld~d~~~~~lyw~---D~~~~~I~r~~~~g~~~~~~~~~-~~--- 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-------GLEDAAAVDFVFSHGLIYWS---DVSEEAIKRTEFNKTESVQNVVV-SG--- 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-------EEEEEEEEEEEGGGTEEEEE---ETTTTEEEEEETTSSSCCCEEEE-EC---
T ss_pred cCeEEEEECCCCceEEEEEec-------CCCccEEEEEEeCCCEEEEE---ECCCCcEEEEEccCCCceEEEEc-CC---
Confidence 467899998765422222211 01225689999865555444 16788999999886522111111 11
Q ss_pred cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC--CCeEEEEE
Q 009203 325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA--DKRIIGFD 402 (540)
Q Consensus 325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--dg~i~iwd 402 (540)
-....++++.+.++.++++-...+.|.++++..... ..+. .........+++.|.+..|+.+.. .+.|..++
T Consensus 78 -l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~-~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 78 -LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR----KVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp -CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEE-CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred -CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE----EEEE-eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 134678999874566666666778999999876542 2222 123456789999987666665552 57899999
Q ss_pred CCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE
Q 009203 403 AGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY 481 (540)
Q Consensus 403 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 481 (540)
+......... ..-.....+++++++. .+.++-+..+.|..+|+......... .+......++++. .+.+
T Consensus 152 ~dG~~~~~~~~~~l~~Pnglavd~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~~-------~~~~~~P~glav~-~~~l 221 (318)
T 3sov_A 152 MDGSSRFIIINSEIYWPNGLTLDYEEQ--KLYWADAKLNFIHKSNLDGTNRQAVV-------KGSLPHPFALTLF-EDIL 221 (318)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEE-------CSCCSCEEEEEEE-TTEE
T ss_pred cCCCCeEEEEECCCCCccEEEEeccCC--EEEEEECCCCEEEEEcCCCCceEEEe-------cCCCCCceEEEEe-CCEE
Confidence 8743322221 2234567889988553 45666677889999999754322211 1123456777775 3445
Q ss_pred EEEEeCCCcEEEEeccC
Q 009203 482 ITSGSADPVIHLFDIRY 498 (540)
Q Consensus 482 l~sg~~dg~i~iwd~~~ 498 (540)
+.+-...+.|..++..+
T Consensus 222 ywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 222 YWTDWSTHSILACNKYT 238 (318)
T ss_dssp EEEETTTTEEEEEETTT
T ss_pred EEEecCCCeEEEEECCC
Confidence 55655678888888865
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.26 E-value=0.0031 Score=59.18 Aligned_cols=279 Identities=7% Similarity=0.030 Sum_probs=143.2
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...+.+|.|.++ +..+++ +.+|.| ++..+.++. .+...... ......+.++.|.+ +..+++ +..+.|
T Consensus 35 ~~~~~~v~~~~~-~~~~~~-G~~g~i-~~s~DgG~t-W~~~~~~~---~~~~~~~~~i~~~~-~~~~~~-----g~~g~i 101 (327)
T 2xbg_A 35 TATILDMSFIDR-HHGWLV-GVNATL-METRDGGQT-WEPRTLVL---DHSDYRFNSVSFQG-NEGWIV-----GEPPIM 101 (327)
T ss_dssp SSCEEEEEESSS-SCEEEE-ETTTEE-EEESSTTSS-CEECCCCC---SCCCCEEEEEEEET-TEEEEE-----EETTEE
T ss_pred CCcEEEEEECCC-CcEEEE-cCCCeE-EEeCCCCCC-CeECCCCC---CCCCccEEEEEecC-CeEEEE-----ECCCeE
Confidence 357999999863 666774 456654 333333332 22211100 11234578899986 444444 455644
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG 382 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 382 (540)
.. ..+.++. -..........+.+..+.+.+ ++..++.+ .+|.| |....+...|.. .. ......+..+++
T Consensus 102 ~~-S~DgG~t---W~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v--~~S~DgG~tW~~--~~-~~~~~~~~~~~~ 170 (327)
T 2xbg_A 102 LH-TTDGGQS---WSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAI--YRTKDSGKNWQA--LV-QEAIGVMRNLNR 170 (327)
T ss_dssp EE-ESSTTSS---CEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCE--EEESSTTSSEEE--EE-CSCCCCEEEEEE
T ss_pred EE-ECCCCCC---ceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccE--EEEcCCCCCCEE--ee-cCCCcceEEEEE
Confidence 43 2332322 111111111223477888776 56555554 45644 322222222222 21 234557889999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK 460 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 460 (540)
.+++.+++++...+..+-+|-. +..-. ..........+.+.+++ .++ ..+.+|.+++.+...+.. .....
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g---~~~-~~~~~G~~~~s~~D~G~t-W~~~~-- 242 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDG---RLW-MIVNGGKIAFSDPDNSEN-WGELL-- 242 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTS---CEE-EEETTTEEEEEETTEEEE-ECCCB--
T ss_pred cCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCC---CEE-EEeCCceEEEecCCCCCe-eEecc--
Confidence 9988887766544444444421 22111 12234556777777765 344 444577777764221211 11100
Q ss_pred ccc-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203 461 QES-SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWHYSHPLLISISSDLNIG 536 (540)
Q Consensus 461 ~~~-~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s~~~~~l~s~~~dg~v~ 536 (540)
.. ..+...+.++.+.+++.+++++. +|.| ++..+. ++....+. .....+.++.|.+++ .+++++.+|.|.
T Consensus 243 -~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~Dg--G~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~ 316 (327)
T 2xbg_A 243 -SPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDG--GQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILL 316 (327)
T ss_dssp -CTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESST--TSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEE
T ss_pred -CCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCC--CcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEE
Confidence 00 01223588999998888777664 6766 344443 33333332 223467889897554 466777889877
Q ss_pred EEe
Q 009203 537 LHK 539 (540)
Q Consensus 537 iw~ 539 (540)
-++
T Consensus 317 ~~~ 319 (327)
T 2xbg_A 317 RYV 319 (327)
T ss_dssp EEC
T ss_pred EEc
Confidence 653
No 286
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.25 E-value=0.00034 Score=73.97 Aligned_cols=192 Identities=7% Similarity=-0.035 Sum_probs=110.7
Q ss_pred ceeEEEEe-CCCCCEEEEEec-CC----cEEEEecCCC-CCccccceeecccCCcceeEEEeccCCCEEEEEeCC-----
Q 009203 328 IINSIIFL-PWENPCFATGGS-DH----AVVLWSERDA-EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD----- 395 (540)
Q Consensus 328 ~v~~~~~~-p~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----- 395 (540)
.+...+|+ | ||++|+.+.. +| .|+++|+.++ +.+. ..+ .....+++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~-----~~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV-----SGTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE-----EEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc-----cCceeeEEEecCCCEEEEEEECCCCCC
Confidence 47789999 9 9988876543 23 4999999998 5311 111 1124578999999888877665
Q ss_pred CeEEEEECCCCCe--eeee--ccCccEEEEeecCCCCCceEEEEEc---CCCeEEEEECCCCccee--eeeccccccCcc
Q 009203 396 KRIIGFDAGVGRA--DFKH--QIESKCMSVLPNPCDFNLFMVQTGT---PGRQLRLYDIRLRQTEI--HAFGWKQESSES 466 (540)
Q Consensus 396 g~i~iwd~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~~~--~~~~~~~~~~~~ 466 (540)
..|+++++.++.. ...+ ........+.++|++ .+|+..+ ....|.++|+.++.... .. .....
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg---~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----l~~~~ 318 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT---NTLCIGSQSPETAEVHLLDLRKGNAHNTLEI-----VRPRE 318 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS---SEEEEEEECSSCEEEEEEESSSCTTCCCEEE-----SSCCC
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC---CEEEEEecCCCCceEEEEECCCCCCCceeEE-----eecCC
Confidence 2688889887642 1222 223445678899988 4444433 34568889998753111 11 11223
Q ss_pred ccCeEEEEEcCCCCEEEEEeCC--C--cEEEEeccCCCCccccc-cccccc--ceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 467 QSALINQSWSPDGLYITSGSAD--P--VIHLFDIRYSANKPSQS-IRAHQK--RVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 467 ~~~v~~~~~sp~g~~l~sg~~d--g--~i~iwd~~~~~~~~~~~-~~~h~~--~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
.....++.|+..+.+++....+ + .|..+++.++ ..... +..|.. .+..+.+. .+.++++...||..+||
T Consensus 319 ~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~--~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 319 KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST--TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc--ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 3445556655444444444443 3 5666666531 12222 222322 45566665 33456677778876655
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.00092 Score=65.67 Aligned_cols=249 Identities=10% Similarity=0.040 Sum_probs=142.6
Q ss_pred CceeEEEec-CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE-------eCCCCCEEEEEec
Q 009203 276 WPEDIAWHP-QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF-------LPWENPCFATGGS 347 (540)
Q Consensus 276 ~V~~~~~~~-~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~p~~~~~l~s~~~ 347 (540)
....|+|.| ++..|+.+. ...+.|++.|+..+ ..................|+| ++ ++..|+.+..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~---~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~ 212 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICY---DGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAID 212 (496)
T ss_dssp SEEEEEEETTEEEEEEEEE---ETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEEC
T ss_pred CCCEEEEccCCCCEEEEEE---CCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeC
Confidence 356899998 355555551 33467888998864 223333221111235889999 99 8885655554
Q ss_pred CC-------cEEEEecCC-CCCcccc--ceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECC-------CCCe-
Q 009203 348 DH-------AVVLWSERD-AEDSWKP--KALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAG-------VGRA- 408 (540)
Q Consensus 348 dg-------~i~iwd~~~-~~~~~~~--~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~-------~~~~- 408 (540)
.+ .|.+++... +...... ..+.. ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~ 289 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence 43 266666433 2221000 12211 134567888994 5556666678889999987 5543
Q ss_pred -------------eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce----eeeecc---cccc-----
Q 009203 409 -------------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE----IHAFGW---KQES----- 463 (540)
Q Consensus 409 -------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~----~~~~~~---~~~~----- 463 (540)
+...........++++|++. .++++-+..+.|+.++....... ....+. ....
T Consensus 290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~--~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~ 367 (496)
T 3kya_A 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK--YAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGT 367 (496)
T ss_dssp CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS--EEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGG
T ss_pred cccccccccccceeEecCCCCCceEEEEcCCCC--EEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccc
Confidence 11222234567899999872 24566677789999765432211 111110 0000
Q ss_pred CccccCeE-EEEEc-------CCCCEEEEEeCCCcEEEEeccCCCCccccccccc------------------------c
Q 009203 464 SESQSALI-NQSWS-------PDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH------------------------Q 511 (540)
Q Consensus 464 ~~~~~~v~-~~~~s-------p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h------------------------~ 511 (540)
...-.... .++.. ++|.++++-..++.|+.++.. +. +.++.+. -
T Consensus 368 ~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~---G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f 443 (496)
T 3kya_A 368 EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE---GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARF 443 (496)
T ss_dssp GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT---CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCC
T ss_pred ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC---CC-EEEEecccccccccCccccccCCCCchhhhhc
Confidence 01112345 55554 567777777778899999843 32 2222211 1
Q ss_pred cceeEEEEcCC-CCEEEEEEcCCcEEEEeC
Q 009203 512 KRVFKAVWHYS-HPLLISISSDLNIGLHKI 540 (540)
Q Consensus 512 ~~i~~l~~s~~-~~~l~s~~~dg~v~iw~l 540 (540)
.....|+++++ |.++++-..+..|+.+++
T Consensus 444 ~~P~gIavd~~~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 444 RDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence 24678999997 777777777888888763
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.16 E-value=0.002 Score=62.35 Aligned_cols=224 Identities=10% Similarity=-0.053 Sum_probs=129.6
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
....|+..++..... ...... ...+..|+|++.++.++++-...+.|+.+++...........+. .......
T Consensus 90 ~~~~I~~i~l~~~~~---~~~~~~----~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p 161 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEY---TSLIPN----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAP 161 (400)
T ss_dssp ETTEEEEECTTSCSC---EEEECS----CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-CSSCSCE
T ss_pred ccceeEEEccCCcce---eEeccc----cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-eCCCCCc
Confidence 457899999886532 222322 34588999998455556666667889999987632100012221 1133457
Q ss_pred eEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEc-CCCeEEEEECCCCccee
Q 009203 378 MGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 378 ~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~ 454 (540)
..+++.+ .++++++-...+.|.+.++.......... .......++.+|.+. .++++-. ..+.|...++.......
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g--~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT--EEEEEECSSSCCEEEEETTSCSCEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC--eEEEEeCCCCCEEEEEeCCCCccEE
Confidence 7889987 45555566667899999998654433322 334567888888542 3444432 24789999887544322
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
.. ...-.....|++++++..|+.+ ...+.|..+|++......+...........+|++. .+.++++....+
T Consensus 240 ~~-------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 240 LV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp EE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred EE-------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 11 1122467899999877766655 45678999998742222222111122334566663 334555555556
Q ss_pred cEEEEe
Q 009203 534 NIGLHK 539 (540)
Q Consensus 534 ~v~iw~ 539 (540)
.|..++
T Consensus 312 ~V~~~~ 317 (400)
T 3p5b_L 312 AIFSAN 317 (400)
T ss_dssp SEEEEE
T ss_pred eEEEEE
Confidence 666554
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.13 E-value=0.0018 Score=60.33 Aligned_cols=221 Identities=10% Similarity=-0.025 Sum_probs=128.4
Q ss_pred CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203 298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
....|+.+++..... .....+.. ...+.+++|++.++.++++-...+.|..+++.++.. ...+.. ......
T Consensus 11 ~~~~I~~i~l~~~~~-~~~~~~~~----~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~---~~~~~~-~~l~~p 81 (318)
T 3sov_A 11 NRRDLRLVDATNGKE-NATIVVGG----LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---VQNVVV-SGLLSP 81 (318)
T ss_dssp CEEEEEEEETTCTTS-CCEEEEEE----EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC---CCEEEE-ECCSCC
T ss_pred ccCeEEEEECCCCce-EEEEEecC----CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc---eEEEEc-CCCCCc
Confidence 467899999986521 11111211 134778999984566666766778899999887632 111111 122456
Q ss_pred eEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCccee
Q 009203 378 MGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEI 454 (540)
Q Consensus 378 ~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~ 454 (540)
..+++.+. +.++++-...+.|.++++......... ........++.+|.+. .++++- +..+.|..+++.......
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g--~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG--FMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGT--EEEEEECSSSCEEEEEETTSCSCEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCC--EEEEEecCCCCEEEEEEcCCCCeEE
Confidence 78888864 455555566789999998754332222 3334567888887542 344443 235789988887543221
Q ss_pred eeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203 455 HAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533 (540)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg 533 (540)
. . ...-.....++|+|++..|+.+ +..+.|..+|++....+.+ +.+......++++.. +.++++-...+
T Consensus 160 ~-~------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~--~~~~~~~P~glav~~-~~lywtd~~~~ 229 (318)
T 3sov_A 160 I-I------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV--VKGSLPHPFALTLFE-DILYWTDWSTH 229 (318)
T ss_dssp E-E------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSCCSCEEEEEEET-TEEEEEETTTT
T ss_pred E-E------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE--ecCCCCCceEEEEeC-CEEEEEecCCC
Confidence 1 0 1112457899999976665554 4568899999874212222 122233456677643 34444544556
Q ss_pred cEEEEe
Q 009203 534 NIGLHK 539 (540)
Q Consensus 534 ~v~iw~ 539 (540)
.|..++
T Consensus 230 ~V~~~~ 235 (318)
T 3sov_A 230 SILACN 235 (318)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 666554
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.10 E-value=0.0011 Score=60.95 Aligned_cols=162 Identities=6% Similarity=0.076 Sum_probs=106.7
Q ss_pred ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc------CCcceeEEEe---ccCCCEEEEEe-----
Q 009203 328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL------HSSAVMGVAG---MQQKQIVLSAG----- 393 (540)
Q Consensus 328 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~v~~l~~---s~~~~~l~~~~----- 393 (540)
...+++|++.++.++++.-..++|..||...+.. ..+...+ ....+..|.| .|++.++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~----~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH----FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE----EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE----EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 4568899984444444444789999999976542 1111111 1124689999 68877777544
Q ss_pred --------CCCeEEEEECC---CCCeeeeecc--------------CccEEEEeecCCCCCceEEEEEcCC-CeEEEEEC
Q 009203 394 --------ADKRIIGFDAG---VGRADFKHQI--------------ESKCMSVLPNPCDFNLFMVQTGTPG-RQLRLYDI 447 (540)
Q Consensus 394 --------~dg~i~iwd~~---~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~d-g~v~i~d~ 447 (540)
.+..|..||+. +++.+..... ...+..++.++++ ...++++.. +.|..++.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G---naYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG---NSYVAFALGMPAIARVSA 166 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS---CEEEEEEESSCEEEEECT
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC---CEEEeCCCCCCeEEEEeC
Confidence 26789999999 7777554332 1247788899887 567777777 77777777
Q ss_pred CCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 448 RLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
...... .+.............+.|+++|+|+.|++....|.|..+|+..
T Consensus 167 dG~~~~--~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 DGKTVS--TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TSCCEE--EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCEEe--eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 644222 1111111122234578999999999988887799999999885
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.06 E-value=0.0095 Score=62.62 Aligned_cols=226 Identities=8% Similarity=-0.074 Sum_probs=131.8
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-ceeEEeecCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-RACVTFLDDKP 323 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~ 323 (540)
...|+..++........+ .....+.+++|.+.+..|+.+ +...+.|+.+++..... ......+..
T Consensus 403 ~~~Ir~i~l~~~~~~~l~---------~~~~~~~gl~~d~~~~~lY~s---D~~~~~I~~~~l~g~~~~~~~~~vi~~-- 468 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHGVSSYDTVISR-- 468 (791)
T ss_dssp BSSEEEECTTSCCCEEEE---------CSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC--------CEEEECS--
T ss_pred ccceeEeeccCCcceeee---------cCCCceEEEeecccCCeeEEe---eccceeEEEEeccCCCCCcceeEEEec--
Confidence 356777777655432211 123456789999865555544 16678899999874211 011222221
Q ss_pred CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C-CeEEEE
Q 009203 324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D-KRIIGF 401 (540)
Q Consensus 324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d-g~i~iw 401 (540)
.......|++.+..++++++-...+.|.+.++..... ..+. .........|++.|.+..|+.... . +.|.+.
T Consensus 469 -~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~----~~l~-~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 469 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp -SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred -CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE----EEEE-eCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 1234778999884456666767788999999986542 2222 123345889999997666665543 3 689999
Q ss_pred ECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC
Q 009203 402 DAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL 480 (540)
Q Consensus 402 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 480 (540)
++.......... .-.....+++++.+. .++++-...+.|..+++.......... ....-....+|++.. +.
T Consensus 543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~--~LYwaD~~~~~I~~~d~dG~~~~~v~~-----~~~~l~~P~glav~~-~~ 614 (791)
T 3m0c_C 543 GLNGVDIYSLVTENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTILE-----DEKRLAHPFSLAVFE-DK 614 (791)
T ss_dssp ETTSCCEEEEECSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEEE-----CTTTTSSEEEEEEET-TE
T ss_pred ecCCCceEEEEeCCCCCceEEEEecCCC--eEEEEeCCCCcEEEEecCCCceEEEec-----CCCccCCCCEEEEeC-CE
Confidence 987544433322 225677888886553 455555667889999997654322211 011122345666642 34
Q ss_pred EEEEEeCCCcEEEEeccC
Q 009203 481 YITSGSADPVIHLFDIRY 498 (540)
Q Consensus 481 ~l~sg~~dg~i~iwd~~~ 498 (540)
++++-...+.|...|..+
T Consensus 615 lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 615 VFWTDIINEAIFSANRLT 632 (791)
T ss_dssp EEEEETTTTEEEEEETTT
T ss_pred EEEEECCCCEEEEEeCCC
Confidence 444555667788777655
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.02 E-value=0.00046 Score=63.41 Aligned_cols=161 Identities=7% Similarity=0.047 Sum_probs=104.8
Q ss_pred CCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeee-ecc-------CccEEEEee---cCCCCCceEEEEEc---
Q 009203 373 HSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFK-HQI-------ESKCMSVLP---NPCDFNLFMVQTGT--- 437 (540)
Q Consensus 373 ~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~-------~~~~~~~~~---~~~~~~~~~l~~~~--- 437 (540)
......++.|.+....++.++ ..+.|..||...+..... ... ......+.+ +|.+ +++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g---rL~vv~~~~~ 87 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK---RLFAVMKNAK 87 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC---EEEEEEEETT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC---cEEEEEcccc
Confidence 445567899988666666666 689999999986544322 111 124578888 5764 5666433
Q ss_pred ----------CCCeEEEEECC---CCcceeeeeccccccCc-------cccCeEEEEEcCCCCEEEEEeCC-CcEEEEec
Q 009203 438 ----------PGRQLRLYDIR---LRQTEIHAFGWKQESSE-------SQSALINQSWSPDGLYITSGSAD-PVIHLFDI 496 (540)
Q Consensus 438 ----------~dg~v~i~d~~---~~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~sg~~d-g~i~iwd~ 496 (540)
.+..|..||+. +++..... .......+ -......++..++|+..++++.. +.|..++.
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26789999999 66543322 11100001 11347899999999999998887 87777666
Q ss_pred cCCCCccccccc------ccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203 497 RYSANKPSQSIR------AHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540 (540)
Q Consensus 497 ~~~~~~~~~~~~------~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l 540 (540)
+ ++.+..+. ......+.|+++|+|..|+....+|.+..+|+
T Consensus 167 d---G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 167 D---GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp T---SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred C---CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence 6 33232221 11224679999999998888877999988874
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.00 E-value=0.0052 Score=58.22 Aligned_cols=243 Identities=14% Similarity=0.109 Sum_probs=122.0
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeecCCCC-
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTADSGD- 299 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~~~~d- 299 (540)
..-+.|+|.|| |+++++ ..+|.|.+++ .+.. ..+. ... ...........++|+|+ +..|+++... ..+
T Consensus 31 ~~P~~ia~~pd-G~l~V~-e~~g~I~~i~--~g~~-~~~~-~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~-~~~~ 102 (352)
T 2ism_A 31 EVPWALAFLPD-GGMLIA-ERPGRIRLFR--EGRL-STYA-ELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTV-AEGG 102 (352)
T ss_dssp SCEEEEEECTT-SCEEEE-ETTTEEEEEE--TTEE-EEEE-ECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEE-CTTS
T ss_pred CCceEEEEcCC-CeEEEE-eCCCeEEEEE--CCCc-cEee-cce-EeecCCCCceeEEECCCCCCCCEEEEEEec-CCCC
Confidence 35689999996 775555 5669999998 3321 1111 111 11122355789999998 5666655211 111
Q ss_pred --CeEEEEecCCCCC---ceeEEeec--CCCCcccceeEEEEeCCCCCEEEEEec-------------CCcEEEEecCCC
Q 009203 300 --SQISVLNLNKTKG---RACVTFLD--DKPHVKGIINSIIFLPWENPCFATGGS-------------DHAVVLWSERDA 359 (540)
Q Consensus 300 --~~i~vwd~~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~-------------dg~i~iwd~~~~ 359 (540)
+.|..|+...+.. ...+..+. ....| ....++|.| ++.++++.+. .|.|.-++....
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~ 179 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE 179 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence 6788888764311 11122232 11122 246899999 8877766432 145666665431
Q ss_pred CCc---------cccceeecccCCcceeEEEecc-CCCEEEEEeCCCe--------EEEEECCCCC--------------
Q 009203 360 EDS---------WKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKR--------IIGFDAGVGR-------------- 407 (540)
Q Consensus 360 ~~~---------~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~--------i~iwd~~~~~-------------- 407 (540)
-.. .....+. .++ .....++|+| +|.++++-..... |.+.. .+.
T Consensus 180 ~p~~npf~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~ 255 (352)
T 2ism_A 180 PAPGNPFLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDP 255 (352)
T ss_dssp BCTTCTTTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCT
T ss_pred CCCCCcccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCC
Confidence 000 0011111 122 3367899999 6666555443333 33332 222
Q ss_pred ----eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE
Q 009203 408 ----ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT 483 (540)
Q Consensus 408 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 483 (540)
++...........+++. .+ .++++....+.|...++............. .+-.....+..+++.|||.+++
T Consensus 256 ~~~~p~~~~~~~~ap~G~~~~-~G---~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~-~~~~~~~rp~~v~~~pdG~lyv 330 (352)
T 2ism_A 256 RYRDPLYFWPQGFPPGNLAFF-RG---DLYVAGLRGQALLRLVLEGERGRWRVLRVE-TALSGFGRLREVQVGPDGALYV 330 (352)
T ss_dssp TSCCCSEECTTCCCEEEEEEE-TT---EEEEEETTTTEEEEEEEEEETTEEEEEEEE-EEEESSCCEEEEEECTTSCEEE
T ss_pred CCcCCeEecCCCCCCcceEEE-CC---EEEEEECCCCEEEEEEECCCCcceeecchh-eecccCCCeeEEEECCCCcEEE
Confidence 11111112233445552 22 456666666778777776433210000000 0001124688999999998766
Q ss_pred EEe
Q 009203 484 SGS 486 (540)
Q Consensus 484 sg~ 486 (540)
+..
T Consensus 331 ~~~ 333 (352)
T 2ism_A 331 TTS 333 (352)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.98 E-value=0.0035 Score=59.41 Aligned_cols=237 Identities=9% Similarity=-0.009 Sum_probs=121.9
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC----CCEEEEEecC----
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE----NPCFATGGSD---- 348 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~~l~s~~~d---- 348 (540)
...++|.|+|+++++ ..++.|.+++ .+. ...+..+............|+|+| + +.++++-...
T Consensus 33 P~~ia~~pdG~l~V~-----e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-----ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp EEEEEECTTSCEEEE-----ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSS
T ss_pred ceEEEEcCCCeEEEE-----eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCC
Confidence 578999999986666 4569999998 332 122222211111134588999999 6 4444444432
Q ss_pred -CcEEEEecCCCCCcccccee-e-cc---cCCcceeEEEeccCCCEEEEEeC-------------CCeEEEEECCCC---
Q 009203 349 -HAVVLWSERDAEDSWKPKAL-H-RN---LHSSAVMGVAGMQQKQIVLSAGA-------------DKRIIGFDAGVG--- 406 (540)
Q Consensus 349 -g~i~iwd~~~~~~~~~~~~~-~-~~---~~~~~v~~l~~s~~~~~l~~~~~-------------dg~i~iwd~~~~--- 406 (540)
+.|..|+...+.. .....+ . .. ........++|.|+|.++++.+. .|.|..+|....
T Consensus 104 ~~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~ 182 (352)
T 2ism_A 104 RNQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP 182 (352)
T ss_dssp EEEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred ccEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence 5688888775421 111111 1 11 11123468999999976666432 256777776531
Q ss_pred -----------CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe--------EEEEECCCCcceee-----------e
Q 009203 407 -----------RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ--------LRLYDIRLRQTEIH-----------A 456 (540)
Q Consensus 407 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--------v~i~d~~~~~~~~~-----------~ 456 (540)
..+.... ......++++|... .++++-..... |.+. ..+..... .
T Consensus 183 ~npf~~~~~~~~~i~a~G-~rnp~g~a~d~~~g--~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~ 257 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLG-HRNPQGLAWHPKTG--ELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRY 257 (352)
T ss_dssp TCTTTTCTTSCTTEEEEC-CSEECCCEECTTTC--CEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTS
T ss_pred CCcccCCCCCCccEEEEc-CCCcccEEEECCCC--CEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCC
Confidence 0111111 12345677787332 23333322222 3332 22110000 0
Q ss_pred eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc--c--cccccccccceeEEEEcCCCCEEEEEE
Q 009203 457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK--P--SQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~--~--~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
....... .+......++| .+|.++++.-..+.|...++...... . ...+-.-...+..+++.|||.++++..
T Consensus 258 ~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 258 RDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 0000011 12235677888 46777776666778888887742110 0 112212235789999999998777654
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.98 E-value=0.022 Score=58.33 Aligned_cols=204 Identities=10% Similarity=-0.024 Sum_probs=119.4
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
-+...+|+|++.++.++++-...+.|..+++........+.. ........+++.+.+..|+.+ +...+.|
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~-------~~~~~P~GlAvD~~~~~ly~~---d~~~~~I 108 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-------SGLLSPDGLACDWLGEKLYWT---DSETNRI 108 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC-------SSCSCEEEEEEETTTTEEEEE---ETTTTEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe-------CCCCCcCeEEEEecCCEEEEE---eCCCCEE
Confidence 356889999996566666666678898888875432122211 112347789999976655554 2678999
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
.+.+++... ....... .-.....|++.|..+.++++-. ..+.|...++..... ..+. .......+.|+
T Consensus 109 ~v~~~dG~~---~~~l~~~---~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~----~~l~-~~~~~~P~Gla 177 (619)
T 3s94_A 109 EVSNLDGSL---RKVLFWQ---ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----FIII-NSEIYWPNGLT 177 (619)
T ss_dssp EEEETTSCS---CEEEECS---SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEE-CSSCSSEEEEE
T ss_pred EEEECCCCC---EEEEEeC---CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce----EEEE-eCCCCCCcEEE
Confidence 999998531 1222211 1234779999994455555542 246777777765432 2222 12345678999
Q ss_pred eccCCCEEEEE-eCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 382 GMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 382 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
+++++..|+.+ ...+.|..+|+.......... .......+++..+ .++++-...+.|...|..+++
T Consensus 178 ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~----~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 178 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED----ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS----EEEEECTTTCSEEEEESSSCC
T ss_pred EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC----EEEEecCCCCEEEEEECCCCc
Confidence 99876655555 456789999987533322111 1122234444433 366666677889998887654
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.95 E-value=0.013 Score=55.51 Aligned_cols=248 Identities=12% Similarity=-0.001 Sum_probs=126.9
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeecCCCC-
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTADSGD- 299 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~~~~d- 299 (540)
..-+.|+|.|| |+++++ ..+|.|++++. ++. ..+. ... ...........|+|+|+ +..|++++.....+
T Consensus 29 ~~P~~ia~~pd-G~l~V~-e~~g~I~~~d~-~G~--~~~~-~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 29 EVPWSIAPLGG-GRYLVT-ERPGRLVLISP-SGK--KLVA-SFD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp SCEEEEEEEET-TEEEEE-ETTTEEEEECS-SCE--EEEE-ECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCeEEEEcCC-CeEEEE-eCCCEEEEEeC-CCc--eEee-ccc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 45789999996 775555 56699998873 333 2221 111 11122345789999998 55665552100012
Q ss_pred ---CeEEEEecCCCCC-----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-------------CCcEEEEecCC
Q 009203 300 ---SQISVLNLNKTKG-----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-------------DHAVVLWSERD 358 (540)
Q Consensus 300 ---~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-------------dg~i~iwd~~~ 358 (540)
..|..|+...... ...+..+.....| ....|+|.| ++.++++.+. .|.|.-++...
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 5677787764310 1112222221222 246799999 8887776442 24555555543
Q ss_pred CCCcc----ccceeecccCCcceeEEEecc-CCCEEEEEeCCC---eEEEEECCC--------C--------Ceeeee-c
Q 009203 359 AEDSW----KPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADK---RIIGFDAGV--------G--------RADFKH-Q 413 (540)
Q Consensus 359 ~~~~~----~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg---~i~iwd~~~--------~--------~~~~~~-~ 413 (540)
.-... ..... ..++ .....++|+| +|.++++-.... .|.+...-. + .++... .
T Consensus 179 ~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 179 RPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp CCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 20000 01111 1223 3356899999 666555533322 233332110 0 111122 2
Q ss_pred cCccEEEEeecCCC----CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203 414 IESKCMSVLPNPCD----FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 414 ~~~~~~~~~~~~~~----~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
.......+.+.... ..+.++++....+.|..+++........... .+.+....+..+++.|||.++++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccCCCCCeeEEEECCCCcEEEEEe
Confidence 23345566663211 2336777777778898888875322211100 1122245789999999997766654
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.92 E-value=0.0064 Score=57.60 Aligned_cols=240 Identities=11% Similarity=-0.000 Sum_probs=123.8
Q ss_pred ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC---CCCEEEEEec---C--
Q 009203 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW---ENPCFATGGS---D-- 348 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~---d-- 348 (540)
...++|.|+|+++++ ..++.|+++|. .+. ..+..+............|+|+|+ ++.++++-+. +
T Consensus 31 P~~ia~~pdG~l~V~-----e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVT-----ERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp EEEEEEEETTEEEEE-----ETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CeEEEEcCCCeEEEE-----eCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 578999999986666 45699999973 342 222222110111245889999993 2444444332 3
Q ss_pred --CcEEEEecCCCCC-cccccee-e-c-ccCCcceeEEEeccCCCEEEEEeC-------------CCeEEEEECCCC---
Q 009203 349 --HAVVLWSERDAED-SWKPKAL-H-R-NLHSSAVMGVAGMQQKQIVLSAGA-------------DKRIIGFDAGVG--- 406 (540)
Q Consensus 349 --g~i~iwd~~~~~~-~~~~~~~-~-~-~~~~~~v~~l~~s~~~~~l~~~~~-------------dg~i~iwd~~~~--- 406 (540)
..|..|+...... ......+ . . .........|+|.|||.++++.+. .|.|..++....
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 5677777765410 0001111 1 0 111123467999999987776432 246666666532
Q ss_pred ------CeeeeeccCccEEEEeecCCCCCceEEEEEcCCC---eEEEEECCCCccee----------e-eeccccccCcc
Q 009203 407 ------RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR---QLRLYDIRLRQTEI----------H-AFGWKQESSES 466 (540)
Q Consensus 407 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~----------~-~~~~~~~~~~~ 466 (540)
..+.... ......++++|... .++++-...+ .|.+.. .+.... . ...........
T Consensus 183 ~npf~~~~i~a~G-~rnp~Gla~d~~~g--~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 183 DNPFPNSPIWSYG-HRNPQGIDWHRASG--VMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp TSSSTTCCEEEEC-CSCCCEEEECTTTC--CEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCCCcEEEEc-cCCcceEEEeCCCC--CEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 0111111 12345677787332 2333322211 233322 111000 0 00000011011
Q ss_pred ccCeEEEEEc-------CCCCEEEEEeCCCcEEEEeccCCCCccc--ccc-cccccceeEEEEcCCCCEEEEEE
Q 009203 467 QSALINQSWS-------PDGLYITSGSADPVIHLFDIRYSANKPS--QSI-RAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 467 ~~~v~~~~~s-------p~g~~l~sg~~dg~i~iwd~~~~~~~~~--~~~-~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
...+..++|. .+|.++++.-..+.|...++... +... ..+ .+-...+..+++.|||.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN-MEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG-GCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC-CcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 2357888883 57777777777788888888742 2221 122 22245789999999998777664
No 298
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.91 E-value=0.0014 Score=61.58 Aligned_cols=211 Identities=12% Similarity=0.109 Sum_probs=115.0
Q ss_pred ceeEEEecCCCeEEEEe--ecC------CCCCeEEEEecCCCCCc-eeEEeecC-CCCcccceeEEEEeCC-CCC--EEE
Q 009203 277 PEDIAWHPQGNSLFSAH--TAD------SGDSQISVLNLNKTKGR-ACVTFLDD-KPHVKGIINSIIFLPW-ENP--CFA 343 (540)
Q Consensus 277 V~~~~~~~~~~~l~s~~--~~~------~~d~~i~vwd~~~~~~~-~~~~~~~~-~~~~~~~v~~~~~~p~-~~~--~l~ 343 (540)
.-+++..|+|..++++. .++ ..+|.|.++|..+.... ..+..... ..........|.+.++ ++. +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 44677778775555530 000 16899999999843221 22222211 1112345777887652 232 444
Q ss_pred EEec--CCcEEEEecCCCCCcccc-ceeecccCCcceeEEEeccCCCEEEEEe-----------------CCCeEEEEEC
Q 009203 344 TGGS--DHAVVLWSERDAEDSWKP-KALHRNLHSSAVMGVAGMQQKQIVLSAG-----------------ADKRIIGFDA 403 (540)
Q Consensus 344 s~~~--dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~-----------------~dg~i~iwd~ 403 (540)
+-.. +.+|.+|++......... ..+. ...-...+++.+.++|.++++.. ..|.|..+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~-g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIR-HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEEC-CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccc-cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 4333 467888887654321111 1111 11234678999999998877654 1245666665
Q ss_pred CCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CCCEE
Q 009203 404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DGLYI 482 (540)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l 482 (540)
. +.......-.....++++|++. .++++-+..+.|..|++......... ..+ ...+..-.+++++ +|++.
T Consensus 211 ~--~~~~~~~~l~~pNGia~spDg~--~lYvadt~~~~I~~~~~~~~g~l~~~----~~~-~~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 211 N--DVRVVAEGFDFANGINISPDGK--YVYIAELLAHKIHVYEKHANWTLTPL----RVL-SFDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp T--CCEEEEEEESSEEEEEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEE----EEE-ECSSEEEEEEECTTTCCEE
T ss_pred C--eEEEeecCCcccCcceECCCCC--EEEEEeCCCCeEEEEEECCCCcEecC----EEE-eCCCCCceEEEeCCCCcEE
Confidence 3 3322233335678899999873 34555667789999998743221111 011 1135678899999 59987
Q ss_pred EEEeCC-CcEEEEecc
Q 009203 483 TSGSAD-PVIHLFDIR 497 (540)
Q Consensus 483 ~sg~~d-g~i~iwd~~ 497 (540)
+++..+ +.|..|+..
T Consensus 282 va~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 282 VGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEESCHHHHHSCCTT
T ss_pred EEecCCceEEEEECCC
Confidence 766544 334444433
No 299
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.88 E-value=0.019 Score=54.40 Aligned_cols=254 Identities=11% Similarity=0.088 Sum_probs=125.3
Q ss_pred CceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeecCCC-
Q 009203 224 RKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTADSG- 298 (540)
Q Consensus 224 ~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~~~~- 298 (540)
..-+.|+|.|| |+ ++++ ...|.|++++.. +.....+. ...............++|+|+ +..|+.++.....
T Consensus 18 ~~P~~i~~~pd-G~~l~V~-e~~G~i~~~~~~-g~~~~~~~-~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFLPD-NHGMLIT-LRGGELRHWQAG-KGLSAPLS-GVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEECST-TCCEEEE-ETTTEEEEEETT-TEECCCCB-SCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEcCC-CCEEEEE-eCCceEEEEeCC-CceeeEec-CCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 45789999996 77 5554 567999998853 22111111 110011122345689999996 5555554221111
Q ss_pred ---CCeEEEEecCCCCCc--eeEEeecCCC-----CcccceeEEEEeCCCCCEEEEEecC-------------CcEEEEe
Q 009203 299 ---DSQISVLNLNKTKGR--ACVTFLDDKP-----HVKGIINSIIFLPWENPCFATGGSD-------------HAVVLWS 355 (540)
Q Consensus 299 ---d~~i~vwd~~~~~~~--~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd 355 (540)
...|..|++...... .....+...+ .|. ...|+|.| ++.++++.+.. |.|.-++
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235666766533110 1111222211 222 35799999 88666665432 4566666
Q ss_pred cCCCCCcc---------ccceeecccCCcceeEEEecc-CCCEEEEEeC-CCeEEEEECCCCCe----------------
Q 009203 356 ERDAEDSW---------KPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGA-DKRIIGFDAGVGRA---------------- 408 (540)
Q Consensus 356 ~~~~~~~~---------~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~-dg~i~iwd~~~~~~---------------- 408 (540)
....-... ...... .++ .....++|+| +|.++++-.. ++.=.|.-+..+..
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 65421000 011111 222 3467899999 5555444222 11112221211111
Q ss_pred ---------------eeeeccCccEEEEeecCCC----CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203 409 ---------------DFKHQIESKCMSVLPNPCD----FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA 469 (540)
Q Consensus 409 ---------------~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 469 (540)
+...........+.+...+ ..+.++++....+.|...++..... ..... .+......
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~---~~~~~~~r 324 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-TEDGR---ILTDRGQR 324 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-EEEEE---ESGGGCCC
T ss_pred cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-eeeEE---cccCCCCc
Confidence 1111112234455554321 2236777777778888888775421 11110 11222347
Q ss_pred eEEEEEcCCCCEEEEEe-CCCc
Q 009203 470 LINQSWSPDGLYITSGS-ADPV 490 (540)
Q Consensus 470 v~~~~~sp~g~~l~sg~-~dg~ 490 (540)
+..+++.|||.++++.. .+|.
T Consensus 325 p~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 325 IRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp EEEEEECTTSCEEEEECSTTEE
T ss_pred eeEEEECCCCcEEEEEeCCCCE
Confidence 89999999998766543 3443
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.87 E-value=0.00018 Score=75.04 Aligned_cols=226 Identities=8% Similarity=-0.046 Sum_probs=127.4
Q ss_pred CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-ceeEEeecCCC
Q 009203 245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-RACVTFLDDKP 323 (540)
Q Consensus 245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~ 323 (540)
...|+..++........+ .....+..++|++.+..|+.+ ....+.|+.+++..... ......+..
T Consensus 385 ~~~I~~id~~~~~~~~~~---------~~~~~p~gla~d~~~~~Ly~s---D~~~~~I~~~~~~g~~~~~~~~~~i~~-- 450 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHGVSSYDTVISR-- 450 (699)
T ss_dssp TTC-CEECTTSCCEECCS---------CCCTTCCCCEEETTTTEEEEC---CTTTTSBEEEESCCCCC-CCCCCBCCS--
T ss_pred ccceEEEeCCCCcceeee---------ccCcceEEEccccccCeEEEE---ecCCCeEEEEecCCCCCCcceEEEEeC--
Confidence 356777777654422111 112346789999977777665 25668899999875100 011111111
Q ss_pred CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C-CeEEEE
Q 009203 324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D-KRIIGF 401 (540)
Q Consensus 324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d-g~i~iw 401 (540)
.......|++.+..+.++++-...+.|.++++..... ..+. .........|++.|.+.+|+.+.. . +.|.++
T Consensus 451 -~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~----~~l~-~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 451 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLF-REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp -CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE----EEEC-CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred -CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce----EEEE-eCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 0123567888763566666656678899999876542 2221 112345678999986665555443 2 678888
Q ss_pred ECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC
Q 009203 402 DAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL 480 (540)
Q Consensus 402 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 480 (540)
++........ ...-.....++++|.+. .++++-+..+.|..+|+........ + ..........+|++..+ .
T Consensus 525 ~~dG~~~~~l~~~~l~~PnGlavd~~~~--~LY~aD~~~~~I~~~d~dG~~~~~~-~----~~~~~~~~P~glavd~~-~ 596 (699)
T 1n7d_A 525 GLNGVDIYSLVTENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTI-L----EDEKRLAHPFSLAVFED-K 596 (699)
T ss_dssp CSSSCCCCEESCSSCSSCCCEEECTTTC--CEEEEETTTTEEEEECSSSSCCEEE-C----CCSSSCSSCCCCEEETT-E
T ss_pred eCCCCCeeEEEeCCCCCccEEEEeccCC--EEEEEecCCCeEEEEccCCCceEEE-E----ecCCcCCCceEeEEECC-E
Confidence 8764322111 12223456788887653 3566667778999999975332211 1 00111223445666543 4
Q ss_pred EEEEEeCCCcEEEEeccC
Q 009203 481 YITSGSADPVIHLFDIRY 498 (540)
Q Consensus 481 ~l~sg~~dg~i~iwd~~~ 498 (540)
++++....+.|..++..+
T Consensus 597 lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 597 VFWTDIINEAIFSANRLT 614 (699)
T ss_dssp EEEECSTTTCEEEEETTT
T ss_pred EEEEeCCCCeEEEEEccC
Confidence 555556678899998765
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.84 E-value=0.02 Score=60.21 Aligned_cols=205 Identities=11% Similarity=-0.000 Sum_probs=126.0
Q ss_pred ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC---cceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS---GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG 298 (540)
Q Consensus 222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~ 298 (540)
....+.+|+|.+..+.++++-...+.|+.+++..... ...+. .........|++.+.+..|+.+ +..
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-------~~~l~~P~GLAvD~~~~~LY~t---D~~ 491 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWT---DSV 491 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------CSSCSCCCEEEEETTTTEEEEE---ETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-------ecCCCCcceeeeeecCCcEEEE---ecC
Confidence 3466889999986567777777778899998875321 11121 1123446789999887666554 267
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-CcEEEEecCCCCCccccceeecccCCcce
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-HAVVLWSERDAEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v 377 (540)
.+.|.+.+++.. .....+.. .......|++.|..+.++++-... +.|...++..... ..+. .......
T Consensus 492 ~~~I~v~~ldG~---~~~~l~~~---~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----~~lv-~~~l~~P 560 (791)
T 3m0c_C 492 LGTVSVADTKGV---KRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLV-TENIQWP 560 (791)
T ss_dssp TTEEEEEETTSS---SEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----EEEE-CSSCSCE
T ss_pred CCeEEEEeCCCC---eEEEEEeC---CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce----EEEE-eCCCCCc
Confidence 889999999843 22222221 123488999999445555554333 6788888876542 2222 2233568
Q ss_pred eEEEeccCCCEEEEE-eCCCeEEEEECCCCCeeeeecc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203 378 MGVAGMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 451 (540)
..|++++.+..|+.+ ...+.|..+|+........... -....+++...+ .++++-...+.|...|..++.
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~----~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----KVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT----EEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC----EEEEEECCCCEEEEEeCCCCc
Confidence 899999766666655 4467899999975443322221 234456665433 466666777888888876554
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.83 E-value=0.0036 Score=58.03 Aligned_cols=190 Identities=12% Similarity=0.144 Sum_probs=115.6
Q ss_pred CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC---CCC---E-EEEEec--CCcEEEEecC--CCCCcccc
Q 009203 297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW---ENP---C-FATGGS--DHAVVLWSER--DAEDSWKP 365 (540)
Q Consensus 297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~---~-l~s~~~--dg~i~iwd~~--~~~~~~~~ 365 (540)
...+-+.+||+. + +.+..+.. +.++.+..-|. .+. + +++.-. +++|.+|++. ++. +
T Consensus 47 ~k~~gL~Vydl~-G---~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----l 113 (355)
T 3amr_A 47 NKKSGLVVYSLD-G---KMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----L 113 (355)
T ss_dssp ETTTEEEEEETT-S---CEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----E
T ss_pred cCCCCEEEEcCC-C---cEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----e
Confidence 567889999994 5 45666643 45777766651 111 2 233333 5789999774 332 1
Q ss_pred ceeecc-----cCCcceeEEEe--ccC-CC-EEEEEeCCCeEEEEECC---C----CCeeeeeccCccEEEEeecCCCCC
Q 009203 366 KALHRN-----LHSSAVMGVAG--MQQ-KQ-IVLSAGADKRIIGFDAG---V----GRADFKHQIESKCMSVLPNPCDFN 429 (540)
Q Consensus 366 ~~~~~~-----~~~~~v~~l~~--s~~-~~-~l~~~~~dg~i~iwd~~---~----~~~~~~~~~~~~~~~~~~~~~~~~ 429 (540)
..+... .....+..+|+ +|. +. ++++...+|.+..|++. . .+.+..+...+..-.+..++..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~-- 191 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEY-- 191 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTT--
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCC--
Confidence 222110 11156777887 664 43 67888889999999883 2 2445667777788888888755
Q ss_pred ceEEEEEcCCCeEEEEECCCCc----ceeeeeccccccCccccCeEEEEE--cCCCC-EEEEEe-CCCcEEEEeccCCCC
Q 009203 430 LFMVQTGTPGRQLRLYDIRLRQ----TEIHAFGWKQESSESQSALINQSW--SPDGL-YITSGS-ADPVIHLFDIRYSAN 501 (540)
Q Consensus 430 ~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~-~l~sg~-~dg~i~iwd~~~~~~ 501 (540)
..|+.+-.+..|..||..-.. ..+..++ .......+..|++ .++|+ ||++++ .++...+||.... .
T Consensus 192 -g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~----~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~-~ 265 (355)
T 3amr_A 192 -GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD----GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK-N 265 (355)
T ss_dssp -TEEEEEETTTEEEEEECSTTSCSCCEEEEEBS----SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT-C
T ss_pred -CeEEEecccceEEEEeCCcCCCCCceEEEEec----CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC-C
Confidence 478888888778888855221 1121111 1122236788887 55665 665555 6789999999732 4
Q ss_pred cccccc
Q 009203 502 KPSQSI 507 (540)
Q Consensus 502 ~~~~~~ 507 (540)
+.+..|
T Consensus 266 ~~vg~f 271 (355)
T 3amr_A 266 KYVADF 271 (355)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 455555
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.83 E-value=0.04 Score=56.51 Aligned_cols=228 Identities=7% Similarity=-0.057 Sum_probs=141.4
Q ss_pred EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203 238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT 317 (540)
Q Consensus 238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~ 317 (540)
+|+.+ ....|+..++........+.. .....+..++|++.+..|+.+ +..++.|..++++... ...
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~~~~~lywt---D~~~~~I~r~~~~g~~---~~~ 73 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL-------TGVKEASALDFDVTDNRIYWT---DISLKTISRAFMNGSA---LEH 73 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC-------CSCSCEEEEEEETTTTEEEEE---ETTTTEEEEEETTSCS---CEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc-------CCCCceEEEEEECCCCEEEEE---ECCCCeEEEEECCCCC---cEE
Confidence 34433 346789899876543221111 122447789999976666554 1678899999987532 122
Q ss_pred eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC--C
Q 009203 318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA--D 395 (540)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--d 395 (540)
.+.. ....+..+++.+..++++++-...+.|.+.++..... ..+. ........+|++.|....|+.... .
T Consensus 74 v~~~---g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~----~~l~-~~~l~~P~~iavdp~~G~lY~tD~g~~ 145 (628)
T 4a0p_A 74 VVEF---GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR----QVLV-WKDLDSPRALALDPAEGFMYWTEWGGK 145 (628)
T ss_dssp EECS---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC----EEEE-CSSCCCEEEEEEETTTTEEEEEECSSS
T ss_pred EEeC---CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE----EEEE-eCCCCCcccEEEccCCCeEEEeCCCCC
Confidence 2221 1134778999874566666666678899999976542 2222 123456789999986555555542 5
Q ss_pred CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEE
Q 009203 396 KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSW 475 (540)
Q Consensus 396 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 475 (540)
+.|...++...........-.....+++++.+. .+.++-...+.|..+|+....... + ........++++
T Consensus 146 ~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~--~LY~aD~~~~~I~~~d~dG~~~~v--~------~~~l~~P~glav 215 (628)
T 4a0p_A 146 PKIDRAAMDGSERTTLVPNVGRANGLTIDYAKR--RLYWTDLDTNLIESSNMLGLNREV--I------ADDLPHPFGLTQ 215 (628)
T ss_dssp CEEEEEETTSCSCEEEECSCSSEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEE--E------EECCSCEEEEEE
T ss_pred CEEEEEeCCCCceEEEECCCCCcceEEEccccC--EEEEEECCCCEEEEEcCCCCceEE--e------eccCCCceEEEE
Confidence 688888887554433334445678888888643 456666777899999997654422 1 111234567777
Q ss_pred cCCCCEEEEEeCCCcEEEEeccC
Q 009203 476 SPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 476 sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.. +.++++-...+.|...|..+
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTT
T ss_pred EC-CEEEEecCCCCEEEEEECCC
Confidence 64 44555555678888888655
No 304
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.77 E-value=0.015 Score=55.13 Aligned_cols=248 Identities=10% Similarity=0.013 Sum_probs=123.6
Q ss_pred ceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecC-CCCcccceeEEEEeCC---CCCEEEEEec----
Q 009203 277 PEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPW---ENPCFATGGS---- 347 (540)
Q Consensus 277 V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~---~~~~l~s~~~---- 347 (540)
...|+|.|+|+ ++++ ...|.|++++.... ....+..+.. .....+....|+|+|+ ++.+.++-+.
T Consensus 20 P~~i~~~pdG~~l~V~-----e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-----LRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp EEEEEECSTTCCEEEE-----ETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred cEEEEEcCCCCEEEEE-----eCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 56899999999 6655 46799999985421 1011111110 0011234789999993 3444444332
Q ss_pred ---CCcEEEEecCCCCC-ccccceee-c-c---cCCcceeEEEeccCCCEEEEEeC-------------CCeEEEEECCC
Q 009203 348 ---DHAVVLWSERDAED-SWKPKALH-R-N---LHSSAVMGVAGMQQKQIVLSAGA-------------DKRIIGFDAGV 405 (540)
Q Consensus 348 ---dg~i~iwd~~~~~~-~~~~~~~~-~-~---~~~~~v~~l~~s~~~~~l~~~~~-------------dg~i~iwd~~~ 405 (540)
...|..|++..... +.....+. . . ........|+|.|||.++++.+. .|.|.-+|...
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 23566666654311 01111111 1 0 01112467999999976666433 24677777763
Q ss_pred CC------------eeeee-ccCccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCccee---ee---------e--
Q 009203 406 GR------------ADFKH-QIESKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEI---HA---------F-- 457 (540)
Q Consensus 406 ~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~---~~---------~-- 457 (540)
.- ..... ........++|+|... .++++- +.++.=.|.-+..+.... .. +
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g--~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSN--ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTT--EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCC--CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 21 11111 1123466788888321 333332 222111222222111100 00 0
Q ss_pred -------ccc---cccCccccCeEEEEEcC-------CCCEEEEEeCCCcEEEEeccCCCCccccc---ccccccceeEE
Q 009203 458 -------GWK---QESSESQSALINQSWSP-------DGLYITSGSADPVIHLFDIRYSANKPSQS---IRAHQKRVFKA 517 (540)
Q Consensus 458 -------~~~---~~~~~~~~~v~~~~~sp-------~g~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~h~~~i~~l 517 (540)
+.. ... .+...+..++|.. +|.++++.-..+.|...++.. +..+.. +......+..+
T Consensus 252 ~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~rp~~v 328 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG--DKVTEDGRILTDRGQRIRDV 328 (353)
T ss_dssp CCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET--TEEEEEEEESGGGCCCEEEE
T ss_pred ccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC--CeEeeeEEcccCCCCceeEE
Confidence 000 000 1223577788863 577777777778888888874 332211 22223478999
Q ss_pred EEcCCCCEEEEEE-cCCcE
Q 009203 518 VWHYSHPLLISIS-SDLNI 535 (540)
Q Consensus 518 ~~s~~~~~l~s~~-~dg~v 535 (540)
++.|||.++++.. .+|.|
T Consensus 329 ~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 329 RTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EECTTSCEEEEECSTTEEE
T ss_pred EECCCCcEEEEEeCCCCEE
Confidence 9999999766543 34533
No 305
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.70 E-value=0.033 Score=52.04 Aligned_cols=241 Identities=14% Similarity=0.139 Sum_probs=125.5
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeec-CCCCcccceeEEEEeCC---CCCEEEEEe--cCC
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLD-DKPHVKGIINSIIFLPW---ENPCFATGG--SDH 349 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~---~~~~l~s~~--~dg 349 (540)
..+.|+|.|+|.++++- ...|.|++++...+.. ..+..+. ......+....|+|+|+ ++.+.++-+ .++
T Consensus 33 ~P~~ia~~pdG~llVte----r~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSS----RDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp SEEEEEECTTSCEEEEE----TTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred CceEEEEcCCCcEEEEE----ecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 35789999999988886 5589999998665421 2222221 11112345889999993 243444322 345
Q ss_pred cEEEEecCCCC----Cccccceeec---ccCCcceeEEEeccCCCEEEEEeC-------------CCeEEEEECCCC---
Q 009203 350 AVVLWSERDAE----DSWKPKALHR---NLHSSAVMGVAGMQQKQIVLSAGA-------------DKRIIGFDAGVG--- 406 (540)
Q Consensus 350 ~i~iwd~~~~~----~~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~~~-------------dg~i~iwd~~~~--- 406 (540)
.|.-|.+..+. .......+.. .........|+|.|||.++++.+. .|.|.-++....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 56666665421 1111121111 111123467999999987777542 355555565422
Q ss_pred ------CeeeeeccCccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCcceeeeecccc---------------ccC
Q 009203 407 ------RADFKHQIESKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEIHAFGWKQ---------------ESS 464 (540)
Q Consensus 407 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~---------------~~~ 464 (540)
..++... ......++|+|.+ .++++- +.++.=.|.-+..+.. +++.. ...
T Consensus 188 ~nPf~~~~i~a~G-~RNp~Gla~dp~G---~L~~~d~g~~~~deln~i~~G~n----yGwP~~~g~~~~~~~~~P~~~~~ 259 (347)
T 3das_A 188 GNPFPGSPVYSYG-HRNVQGLAWDDKQ---RLFASEFGQDTWDELNAIKPGDN----YGWPEAEGKGGGSGFHDPVAQWS 259 (347)
T ss_dssp TCSSTTCCEEEBC-CSBCCEEEECTTC---CEEEEECCSSSCEEEEEECTTCB----CCTTTCCSSCCCTTCCCCSEEEC
T ss_pred CCCCCCCeEEeeC-CCCcceEEECCCC---CEEEEecCCCCCceeeEEcCCCE----ecCCcccCCCCCccccCCcEecC
Confidence 0111111 1234567788754 233332 2232222222222211 11110 011
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEcCCCCEEEEEE
Q 009203 465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWHYSHPLLISIS 530 (540)
Q Consensus 465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~ 530 (540)
.+......++|. +|..++..-..+.|....+.... .+....+.+..+.+.+|+..|||.++++.+
T Consensus 260 ~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 260 TDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 112356777876 46666666666777777776421 111223334456899999999998777654
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.68 E-value=0.00047 Score=71.92 Aligned_cols=204 Identities=11% Similarity=0.012 Sum_probs=116.9
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCC---CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR---GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
..+.+|+|+++++.++++-...+.|+.+++... .....+. .........|++.+.+..|+.+ ....+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-------~~~~~~P~glavD~~~g~LY~t---D~~~~ 475 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWT---DSVLG 475 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-------CSCC--CCCEECCCSSSBCEEC---CTTTS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-------eCCCCCcceEEEEeeCCcEEEE---eccCC
Confidence 456789999864555566556788999988751 1111111 0111235678888655544443 15678
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-CcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-HAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
.|.++++... .....+.. .......|++.|..+.++++-... +.|..+++..... ..+. .......+.
T Consensus 476 ~I~v~d~dg~---~~~~l~~~---~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l~-~~~l~~PnG 544 (699)
T 1n7d_A 476 TVSVADTKGV---KRKTLFRE---QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLV-TENIQWPNG 544 (699)
T ss_dssp CEEEEBSSSC---CEEEECCC---SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEES-CSSCSSCCC
T ss_pred eEEEEecCCC---ceEEEEeC---CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEEE-eCCCCCccE
Confidence 9999998753 22222221 123467889998445555554333 6788888765431 2221 112345678
Q ss_pred EEeccCCCEE-EEEeCCCeEEEEECCCCCeeeeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203 380 VAGMQQKQIV-LSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452 (540)
Q Consensus 380 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 452 (540)
|+|+|++..| ++-+..+.|..+|+.......... .......+++... .++++....+.|..+|..+++.
T Consensus 545 lavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~----~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT----EEEEECSTTTCEEEEETTTEEE
T ss_pred EEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC----EEEEEeCCCCeEEEEEccCCCc
Confidence 9999875555 445557789999987433222211 1122334444332 4666667778899999876553
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.56 E-value=0.099 Score=53.56 Aligned_cols=200 Identities=13% Similarity=0.075 Sum_probs=123.2
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
-..+..|+|+++++.++++-..++.|..+++..... ..+.. ........+++.+.+..|+.+ +...+.|
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~-------~g~~~P~GlAvD~~~~~LY~t---D~~~~~I 104 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVE-------FGLDYPEGMAVDWLGKNLYWA---DTGTNRI 104 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-------SSCSCCCEEEEETTTTEEEEE---ETTTTEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEe-------CCCCCcceEEEEeCCCEEEEE---ECCCCEE
Confidence 356889999997677777777789999999875432 22221 111346689998876666554 2677899
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEE-ecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATG-GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
.+.+++... . ...+.. .-....+|++.|..+.++++- +..+.|...++..... ..+.. .......|+
T Consensus 105 ~v~~~dG~~-~--~~l~~~---~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----~~l~~--~~~~P~Gla 172 (628)
T 4a0p_A 105 EVSKLDGQH-R--QVLVWK---DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----TTLVP--NVGRANGLT 172 (628)
T ss_dssp EEEETTSTT-C--EEEECS---SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEEC--SCSSEEEEE
T ss_pred EEEecCCCc-E--EEEEeC---CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----EEEEC--CCCCcceEE
Confidence 999997542 1 122211 124478999999455555554 2256788888876542 23322 345688999
Q ss_pred eccCCCEEEEE-eCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 382 GMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 382 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
+++++..|+.+ ...+.|..+|+.................++...+ .++++-...+.|...|..+
T Consensus 173 lD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~----~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 173 IDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQD----YIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETT----EEEEEETTTTEEEEEETTT
T ss_pred EccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECC----EEEEecCCCCEEEEEECCC
Confidence 99976666555 4567899999875443222222234445555432 3555555566666666543
No 308
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.53 E-value=0.021 Score=62.41 Aligned_cols=245 Identities=10% Similarity=0.070 Sum_probs=134.0
Q ss_pred ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203 246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV 325 (540)
Q Consensus 246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 325 (540)
.+|.|-|+..+..+.+.... --+.-.+|..+.||.- ...+++|||+.+.. .+....-
T Consensus 48 ~~vvIidl~~~~~~~rrpi~-----------AdsAIMnP~~~iiALr-----ag~~lQiFnl~~k~---klks~~~---- 104 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALK-----AGKTLQIFNIEMKS---KMKAHTM---- 104 (1630)
T ss_pred ceEEEEECCCCCCccccccc-----------chhhccCCCcceEEEe-----cCCeEEEeehHHhh---hhccccc----
Confidence 47889999886644222111 1235568888877774 58899999998752 2333322
Q ss_pred ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc--cCCcceeEEEeccCCCEEEEEeC-------CC
Q 009203 326 KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN--LHSSAVMGVAGMQQKQIVLSAGA-------DK 396 (540)
Q Consensus 326 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~-------dg 396 (540)
...|.-=.|-. .+.|+..+ +..|+.|++.+.... .+.+.+. -....|.....+++.++++..+- .|
T Consensus 105 ~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P--~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 105 TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCcc--HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence 23466667763 34454444 367999999753220 1222221 12456777788888888876543 57
Q ss_pred eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc---CCCeEEEEECCCC---ccee--eeeccccccCcccc
Q 009203 397 RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT---PGRQLRLYDIRLR---QTEI--HAFGWKQESSESQS 468 (540)
Q Consensus 397 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~---~~~~--~~~~~~~~~~~~~~ 468 (540)
.+.+|..+.+..-....+......+..........+++.+. ..+.++|.++... .... ..............
T Consensus 180 ~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D 259 (1630)
T 1xi4_A 180 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (1630)
T ss_pred eeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC
Confidence 88999887654311111111111111110000001222221 2368889888653 1111 00000001112233
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203 469 ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520 (540)
Q Consensus 469 ~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s 520 (540)
-..++..|+....+...+.-|.|++||+.+ +.++..-+-...+|...+-+
T Consensus 260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t--~~~i~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLET--GTCIYMNRISGETIFVTAPH 309 (1630)
T ss_pred cceEEEeccccCEEEEEecCceEEEEeccc--chhhhhccccCCceEEeccC
Confidence 456788888888888899999999999998 56555444344444444433
No 309
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.51 E-value=0.048 Score=50.55 Aligned_cols=196 Identities=11% Similarity=0.098 Sum_probs=115.9
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC----CCe--EEEEeecCCC--CCeEEEEec
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ----GNS--LFSAHTADSG--DSQISVLNL 307 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~--l~s~~~~~~~--d~~i~vwd~ 307 (540)
..+++.....+-+.+||+ .++.+..+. . +.++.+..-|+ |+. |+.++. .. +++|.+|++
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~--------~--g~~nnVD~r~~~~l~g~~~dla~as~--R~~~~n~l~vf~i 106 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYN--------T--GKLNNVDIRYDFPLNGKKVDIAAASN--RSEGKNTIEIYAI 106 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEEC--------C--SCEEEEEEEEEEEETTEEEEEEEEEE--CSTTCCEEEEEEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEcc--------C--CCcccEEEecccccCCceEeEEEEeC--CCCCCCeEEEEEE
Confidence 445666667788999999 666655542 1 33566666552 322 333321 44 689999977
Q ss_pred CCCCCceeEEeecCC--C--CcccceeEEEE--eCCCCC-EEEEEecCCcEEEEecCC---CCCccccceeecccCCcce
Q 009203 308 NKTKGRACVTFLDDK--P--HVKGIINSIIF--LPWENP-CFATGGSDHAVVLWSERD---AEDSWKPKALHRNLHSSAV 377 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~--~--~~~~~v~~~~~--~p~~~~-~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~v 377 (540)
+... ..+..+... + .....+..+++ +|..+. ++++...+|.+..|++.. +... ...+....-.+.+
T Consensus 107 Dp~~--~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~--~~lVR~f~lgsq~ 182 (355)
T 3amr_A 107 DGKN--GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS--GKKVRAFKMNSQT 182 (355)
T ss_dssp CTTT--CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE--EEEEEEEECSSCE
T ss_pred CCCC--CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc--ceEEEEecCCCCc
Confidence 5321 124444221 1 11145677777 774454 577778889999999843 2211 1112222234678
Q ss_pred eEEEeccCCCEEEEEeCCCeEEEEECC-----CCCeeeeeccC---ccEEEEee--cCCCCCceEEEEEcCCCeEEEEEC
Q 009203 378 MGVAGMQQKQIVLSAGADKRIIGFDAG-----VGRADFKHQIE---SKCMSVLP--NPCDFNLFMVQTGTPGRQLRLYDI 447 (540)
Q Consensus 378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~ 447 (540)
..+...+....|+.+-.+.-|..+|.+ +++.+...... ..+-.++. .+++ .+.+++++-.+++..+||.
T Consensus 183 EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g-~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 183 EGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG-KGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG-CEEEEEEEGGGTEEEEEES
T ss_pred ceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC-CEEEEEEcCCCCEEEEEEC
Confidence 899999888999999998888888855 23333332222 23444444 4433 2246666667889999999
Q ss_pred CC
Q 009203 448 RL 449 (540)
Q Consensus 448 ~~ 449 (540)
..
T Consensus 262 ~~ 263 (355)
T 3amr_A 262 QG 263 (355)
T ss_dssp ST
T ss_pred CC
Confidence 73
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.50 E-value=0.15 Score=56.02 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=47.6
Q ss_pred cCceEEEEEecCC-----CcEEEEEeC-CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEee
Q 009203 223 KRKLRSLSLNPVN-----EQLFVTSAL-DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHT 294 (540)
Q Consensus 223 ~~~V~~l~~spd~-----~~~l~tg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~ 294 (540)
.+.|.|+++.|.. +.++|.|.+ |++|+|+++.+.+....... +-.....++.+.. ...+|..|
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L-------~~~~~p~si~l~~~~~~~~L~ig-- 623 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-------GGEIIPRSILMTTFESSHYLLCA-- 623 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC-------CSSCCEEEEEEEEETTEEEEEEE--
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC-------CCCCCCcEEEEEEeCCCcEEEEE--
Confidence 4689999998632 479999997 99999999986543322111 1112234444432 23477777
Q ss_pred cCCCCCeEEEEecC
Q 009203 295 ADSGDSQISVLNLN 308 (540)
Q Consensus 295 ~~~~d~~i~vwd~~ 308 (540)
-.||.+..+.++
T Consensus 624 --l~dG~l~~~~~d 635 (1158)
T 3ei3_A 624 --LGDGALFYFGLN 635 (1158)
T ss_dssp --ETTSEEEEEEEC
T ss_pred --eCCCeEEEEEEc
Confidence 788888666554
No 311
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.50 E-value=0.12 Score=52.99 Aligned_cols=288 Identities=10% Similarity=0.009 Sum_probs=151.7
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
-...+.|+++++++++.++-...+.|...++..... ..+.. +......++++..+ .|+.+ +..++.|
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~~-------~~~~~P~gi~~~~~--~ly~t---d~~~~~V 236 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVK-------GSLPHPFALTLFED--ILYWT---DWSTHSI 236 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-C----------------CCCEEESSS--EEEEE---CTTTCSE
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEEEe-------CCCCCceEEEEeCC--EEEEe---cCCCCEE
Confidence 356789999997566666666677888888864322 22211 11122346777654 45544 2567889
Q ss_pred EEEecCCCCCceeE----------EeecC--CC--C-----cccceeEEEE-----------eCC------C-------C
Q 009203 303 SVLNLNKTKGRACV----------TFLDD--KP--H-----VKGIINSIIF-----------LPW------E-------N 339 (540)
Q Consensus 303 ~vwd~~~~~~~~~~----------~~~~~--~~--~-----~~~~v~~~~~-----------~p~------~-------~ 339 (540)
...|..++.....+ ..+.. .+ . ..+.+..+++ .|. + .
T Consensus 237 ~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~ 316 (619)
T 3s94_A 237 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGA 316 (619)
T ss_dssp EEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSC
T ss_pred EEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCC
Confidence 99988776432111 11100 00 0 0011111222 110 1 1
Q ss_pred -CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEE-EEeCCCeEEEEECCCCCeeeeeccC-c
Q 009203 340 -PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVL-SAGADKRIIGFDAGVGRADFKHQIE-S 416 (540)
Q Consensus 340 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-~ 416 (540)
.+|+.+ ..+.|+..++...... ...+. ...-..+.+++|.+.+..|+ +-...+.|+.+++............ .
T Consensus 317 ~~~Ll~~-~~~~i~~i~l~~~~~~--~~~~~-~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~ 392 (619)
T 3s94_A 317 TELLLLA-RRTDLRRISLDTPDFT--DIVLQ-LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 392 (619)
T ss_dssp SEEEEEE-ESSCEEEEESSSTTCC--CEECC-CSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred ceEEEEE-cccceEEEecCCCccc--eeEEe-ccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC
Confidence 122222 2356777777654321 01111 11224577899988555555 4445788999998764332222221 3
Q ss_pred cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q 009203 417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS--ADPVIHLF 494 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iw 494 (540)
....++++..+. .++++-+..+.|.+.++......... ...-....+++++|...+|+... ..+.|...
T Consensus 393 ~p~GlAvD~~~~--~lY~tD~~~~~I~v~~~~G~~~~~l~-------~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~ 463 (619)
T 3s94_A 393 HPDGIAVDWVAR--NLYWTDTGTDRIEVTRLNGTMRKILI-------SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERA 463 (619)
T ss_dssp CCCEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEE-------CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcCceEEecccC--cEEEEeCCCCcEEEEeCCCCeEEEEE-------ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEE
Confidence 444566654332 46667777889999998865432111 12234689999999744444433 23667777
Q ss_pred eccCCCCcccccc-cccccceeEEEEcCCCCEEEEEE-cCCcEEEEe
Q 009203 495 DIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISIS-SDLNIGLHK 539 (540)
Q Consensus 495 d~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~-~dg~v~iw~ 539 (540)
+++. .....+ ...-...+.|++++++..|..+. ..+.|...+
T Consensus 464 ~~dG---~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~ 507 (619)
T 3s94_A 464 ALDG---SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMN 507 (619)
T ss_dssp ETTS---CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCC---CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEe
Confidence 7763 222222 22334678899998766655554 345566554
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.42 E-value=0.01 Score=50.69 Aligned_cols=184 Identities=8% Similarity=-0.065 Sum_probs=96.1
Q ss_pred CCEEEEEecCCcEEEEecCCCCC-cc--ccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC
Q 009203 339 NPCFATGGSDHAVVLWSERDAED-SW--KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE 415 (540)
Q Consensus 339 ~~~l~s~~~dg~i~iwd~~~~~~-~~--~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 415 (540)
..+|+....| +++.=....+.. .+ +...+-..+ -..+..++|+|+|.+.++ .+|.++-.+..+.....-....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~g-w~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGG-WSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSS-CTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccc-cccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 3456666666 555444433321 11 122221111 246789999998886666 7788888777553332111111
Q ss_pred cc--------EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203 416 SK--------CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA 487 (540)
Q Consensus 416 ~~--------~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 487 (540)
.. -.++.|+|++ .+.++ .||.|+-++-.+.............-..--..+..|.|+|+|.+.++.
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G---~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-- 152 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNG---YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-- 152 (236)
T ss_dssp EEEECSCGGGCSEEEECTTS---CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred cEecccccccceEEEECCCC---CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence 22 2578888887 34444 569998887644322111000000001112367999999999888777
Q ss_pred CCcEEEEeccCCCCccc---ccc-c-ccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203 488 DPVIHLFDIRYSANKPS---QSI-R-AHQKRVFKAVWHYSHPLLISISSDLNI 535 (540)
Q Consensus 488 dg~i~iwd~~~~~~~~~---~~~-~-~h~~~i~~l~~s~~~~~l~s~~~dg~v 535 (540)
|+.++-+.......... .+. . .....-..+.|.++|.+.+.. +|.+
T Consensus 153 dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 153 GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 77754333222111000 011 1 222244557799999876665 7744
No 313
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.41 E-value=0.084 Score=49.26 Aligned_cols=236 Identities=11% Similarity=0.065 Sum_probs=122.1
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...+.+|.|.| +..++.| .++.| |...++....+..... ..+...+..+.+.+++..++++ . ++.|
T Consensus 79 ~~~~~~i~~~~--~~~~~~g-~~g~i--~~S~DgG~tW~~~~~~----~~~~~~~~~i~~~~~~~~~~~~----~-~g~v 144 (327)
T 2xbg_A 79 DYRFNSVSFQG--NEGWIVG-EPPIM--LHTTDGGQSWSQIPLD----PKLPGSPRLIKALGNGSAEMIT----N-VGAI 144 (327)
T ss_dssp CCEEEEEEEET--TEEEEEE-ETTEE--EEESSTTSSCEECCCC----TTCSSCEEEEEEEETTEEEEEE----T-TCCE
T ss_pred CccEEEEEecC--CeEEEEE-CCCeE--EEECCCCCCceECccc----cCCCCCeEEEEEECCCCEEEEe----C-CccE
Confidence 45689999986 4555544 45543 3333333222222110 1223446788887777766665 3 5543
Q ss_pred EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE-EecCCCCCccccceeecccCCcceeEEE
Q 009203 303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL-WSERDAEDSWKPKALHRNLHSSAVMGVA 381 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~v~~l~ 381 (540)
.. ..+.+..-..+ ... ....+..+.+.+ ++.+++.+. +|.+.. +|- .+. .| ..+. ......+..+.
T Consensus 145 ~~-S~DgG~tW~~~--~~~---~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~-gG~-tW--~~~~-~~~~~~~~~~~ 211 (327)
T 2xbg_A 145 YR-TKDSGKNWQAL--VQE---AIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEP-GQT-AW--EPHN-RTTSRRLHNMG 211 (327)
T ss_dssp EE-ESSTTSSEEEE--ECS---CCCCEEEEEECT-TSCEEEEET-TSSEEEEECT-TCS-SC--EEEE-CCSSSCEEEEE
T ss_pred EE-EcCCCCCCEEe--ecC---CCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCC-CCC-ce--eECC-CCCCCccceeE
Confidence 22 12223221112 111 234688999999 777776654 455443 332 122 12 2221 23456788999
Q ss_pred eccCCCEEEEEeCCCeEEEEECCCCCeeeeec-----cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203 382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-----IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456 (540)
Q Consensus 382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 456 (540)
+.+++..+ .++.+|.+++.+...++.-.... ....+.++.+.+.+ .+++++. ++.| ++..+.+.. ...
T Consensus 212 ~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~---~~~~~g~-~g~i-~~S~DgG~t-W~~ 284 (327)
T 2xbg_A 212 FTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN---EVWLAGG-AGAL-LCSQDGGQT-WQQ 284 (327)
T ss_dssp ECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS---CEEEEES-TTCE-EEESSTTSS-CEE
T ss_pred ECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC---EEEEEeC-CCeE-EEeCCCCcc-cEE
Confidence 99888765 45567888777533233222111 12346777787654 4555544 6666 344443332 111
Q ss_pred eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203 457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI 496 (540)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~ 496 (540)
.. ........+.++.|.+++. +++++.+|.|.-++-
T Consensus 285 ~~---~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 285 DV---DVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp CG---GGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred cC---ccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 10 1111234577888875555 555567897776654
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.38 E-value=0.047 Score=51.23 Aligned_cols=186 Identities=12% Similarity=0.110 Sum_probs=104.4
Q ss_pred eeEEEEeCCCCCEEEEE------------ecCCcEEEEecCCCCCccccceeeccc-----CCcceeEEEecc--CCC-E
Q 009203 329 INSIIFLPWENPCFATG------------GSDHAVVLWSERDAEDSWKPKALHRNL-----HSSAVMGVAGMQ--QKQ-I 388 (540)
Q Consensus 329 v~~~~~~p~~~~~l~s~------------~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~l~~s~--~~~-~ 388 (540)
.-.+...| +|..++++ ..+|.|.++|..+.... ...+...+ .......+.+.+ +|. +
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~--~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA--VSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCC--EEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc--eEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 45666777 76555554 26899999999853221 12222211 234567777755 353 3
Q ss_pred EEEE-eC--CCeEEEEECCCC--Ceeee--e--ccCccEEEEeecCCCCCceEEEEEc-----------------CCCeE
Q 009203 389 VLSA-GA--DKRIIGFDAGVG--RADFK--H--QIESKCMSVLPNPCDFNLFMVQTGT-----------------PGRQL 442 (540)
Q Consensus 389 l~~~-~~--dg~i~iwd~~~~--~~~~~--~--~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~dg~v 442 (540)
|+++ .. +.+|.+|++..+ ..... . ..-.....+...+++ .++++.. ..|.|
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G---~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE---HFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT---EEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC---CEEecCCcEeCCcccccchhhccCCccEE
Confidence 4444 33 457777776543 22211 1 122456677777766 4555543 12455
Q ss_pred EEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcc--cccccccccceeEEEE
Q 009203 443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKP--SQSIRAHQKRVFKAVW 519 (540)
Q Consensus 443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~--~~~~~~h~~~i~~l~~ 519 (540)
..||.. +.... ...-...+.++||||++.|+.+. ..+.|+.|++... +.. ...+ ...+....+++
T Consensus 206 yr~d~~--~~~~~--------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~-g~l~~~~~~-~~~g~PDGi~v 273 (355)
T 3sre_A 206 TYYSPN--DVRVV--------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-WTLTPLRVL-SFDTLVDNISV 273 (355)
T ss_dssp EEECTT--CCEEE--------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SCEEEEEEE-ECSSEEEEEEE
T ss_pred EEEECC--eEEEe--------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC-CcEecCEEE-eCCCCCceEEE
Confidence 555543 21111 11223578999999998877654 5688999998742 221 1223 22356788999
Q ss_pred cC-CCCEEEEEEcC
Q 009203 520 HY-SHPLLISISSD 532 (540)
Q Consensus 520 s~-~~~~l~s~~~d 532 (540)
.+ +|.+.+++..+
T Consensus 274 D~e~G~lwva~~~~ 287 (355)
T 3sre_A 274 DPVTGDLWVGCHPN 287 (355)
T ss_dssp CTTTCCEEEEEESC
T ss_pred eCCCCcEEEEecCC
Confidence 98 59988877544
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.24 E-value=0.034 Score=52.73 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=99.7
Q ss_pred CCCEEEEEecCCcEEEEecCCCCCccccceeeccc--CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-------
Q 009203 338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL--HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA------- 408 (540)
Q Consensus 338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------- 408 (540)
++..++.+- ++.||..++..... .+.+.... ....|..+..+|+|++|+..+. ..|.|..+-.+..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~---Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSL---YHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSS---CEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred CCCEEEEEE-CCEEEEEECCCCCc---ceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccc
Confidence 566666554 47788888875431 33333321 2335788999999999998865 4788888863221
Q ss_pred -----eeeec-------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc-ceeeeeccc---cccCccccCeEE
Q 009203 409 -----DFKHQ-------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ-TEIHAFGWK---QESSESQSALIN 472 (540)
Q Consensus 409 -----~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~---~~~~~~~~~v~~ 472 (540)
...+. ....+..+.|+|.+..+..|++-..|+.|++||+.... .+. .+... .........|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 11112 24568999999998888899999999999999998622 122 22100 011233467899
Q ss_pred EEEcCCCCEEEEEe--CCCcEEEE
Q 009203 473 QSWSPDGLYITSGS--ADPVIHLF 494 (540)
Q Consensus 473 ~~~sp~g~~l~sg~--~dg~i~iw 494 (540)
++|..+|-.|...+ ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999886666644 77888654
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.18 E-value=0.2 Score=48.94 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=64.7
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC-CCCCCCCceeEEEecC---CCeEEEEeecC---
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL-SPKHRRWPEDIAWHPQ---GNSLFSAHTAD--- 296 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~~~~---~~~l~s~~~~~--- 296 (540)
...++|+|.|| |+++++-...+.|++++..++.. ..+....... ..........|+|+|+ +..|+.+++..
T Consensus 27 ~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 35679999996 88777654445788887654432 2221111110 0113456789999996 66666653210
Q ss_pred C-C-----CCeEEEEecCCCCC-----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203 297 S-G-----DSQISVLNLNKTKG-----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS 347 (540)
Q Consensus 297 ~-~-----d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 347 (540)
. . ...|.-|++..... ...+..+.....| ....|+|.| ++.++++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECT-TSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECC-CCeEEEEECC
Confidence 0 0 23566666543211 1112223322223 368999999 8888777553
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.11 E-value=0.18 Score=47.05 Aligned_cols=248 Identities=13% Similarity=0.058 Sum_probs=125.6
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeecCCCCC
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTADSGDS 300 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~~~~d~ 300 (540)
..-+.|+|.|| |.++++--..|.|++++...+.. ..+ ................|+|+|+ +..|+..++. ..++
T Consensus 32 ~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~-~~v-~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~-~~~~ 107 (347)
T 3das_A 32 NSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRK-TEL-GEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS-ASDN 107 (347)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCE-EEE-EECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC-SSSE
T ss_pred CCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcE-eee-cccCceeecCCCCceeeEeccccccCCEEEEEEec-CCCC
Confidence 45789999996 88777765589999987654432 111 1111111223456789999996 4455554322 2445
Q ss_pred eEEEEecCCCC--------CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-------------CCcEEEEecCCC
Q 009203 301 QISVLNLNKTK--------GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-------------DHAVVLWSERDA 359 (540)
Q Consensus 301 ~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-------------dg~i~iwd~~~~ 359 (540)
.|.-|.+..+. ....+..+.....|. ...|.|.| ++.++++.+. .|.|.-.+....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 66667665421 112222233222332 46799999 8887777542 244544455432
Q ss_pred CCccc---cceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCe------------------eeeeccC-c
Q 009203 360 EDSWK---PKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRA------------------DFKHQIE-S 416 (540)
Q Consensus 360 ~~~~~---~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~------------------~~~~~~~-~ 416 (540)
-.... -..+...+|. ....++|+|+|.++++-.. |+.=.|--+..+.. +...... .
T Consensus 185 ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 10000 0012222343 3568999998776665322 22222222222211 1111111 2
Q ss_pred cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203 417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS 486 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 486 (540)
....+.|... .++...-..+.|....+........ ....+.+....+..|+..|||.++++.+
T Consensus 264 ap~G~~~~~g----~~~~~~l~~~~l~~v~~~~~~~~~~---~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAEG----SVWMAGLRGERLWRIPLKGTAAAAD---PQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEETT----EEEEEESTTCSEEEEEEETTEESSC---CEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEcC----ceeeccccCCEEEEEEecCCceecc---eEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 3344444432 3555555556666666654321100 0012233346789999999997766543
No 318
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.10 E-value=0.24 Score=48.42 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=62.4
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC---CcccceeEEEEeCCC---CCEEEEEec--
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP---HVKGIINSIIFLPWE---NPCFATGGS-- 347 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~---~~~l~s~~~-- 347 (540)
..+.|+|.|+|+++++- ...+.|++++..++.. ..+..+.... ...+....|+|+| + +..|..+..
T Consensus 28 ~P~~~a~~pdG~l~V~e----~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~ 101 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTE----RATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFK 101 (454)
T ss_dssp SEEEEEECTTSCEEEEE----TTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEE
T ss_pred CceEEEEcCCCcEEEEE----cCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEecc
Confidence 35789999999988875 4445788887654422 2222232211 1234578999999 4 444444332
Q ss_pred -----------CCcEEEEecCCCCC-ccccceeec---ccCCcceeEEEeccCCCEEEEEeC
Q 009203 348 -----------DHAVVLWSERDAED-SWKPKALHR---NLHSSAVMGVAGMQQKQIVLSAGA 394 (540)
Q Consensus 348 -----------dg~i~iwd~~~~~~-~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~~~ 394 (540)
...|.-|+...... +.....+.. .........|+|.|||.++++.+.
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 13455555543210 001111111 111224689999999988777553
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.05 E-value=0.18 Score=46.11 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=94.5
Q ss_pred CCCeEEEEeecCCCC-----CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEE
Q 009203 285 QGNSLFSAHTADSGD-----SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLW 354 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iw 354 (540)
++.+++.| +.+ ..+.+||+.+......... ...+........+.+ ++.+++.|+.+ ..+.+|
T Consensus 62 ~~~l~v~G----G~~~~~~~~~~~~~d~~~~~~~~W~~~-~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~ 133 (301)
T 2vpj_A 62 HDRIYVIG----GYDGRSRLSSVECLDYTADEDGVWYSV-APMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERY 133 (301)
T ss_dssp TTEEEEEC----CBCSSCBCCCEEEEETTCCTTCCCEEE-CCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEE
T ss_pred CCEEEEEc----CCCCCccCceEEEEECCCCCCCeeEEC-CCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEE
Confidence 55666665 433 4689999987641001111 111111121222222 66777777654 358889
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-----CeEEEEECCCCCeeeeeccC---ccEEEEeecCC
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGVGRADFKHQIE---SKCMSVLPNPC 426 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~ 426 (540)
|+.+.+- ..+........-.+++. -++.+++.|+.+ ..+.+||+.+++-....... .....+...
T Consensus 134 d~~~~~W----~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-- 206 (301)
T 2vpj_A 134 DPNIDQW----SMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLN-- 206 (301)
T ss_dssp ETTTTEE----EEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET--
T ss_pred cCCCCeE----EECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEEC--
Confidence 9887652 11111111111112222 267777777654 35889999876543221111 111222222
Q ss_pred CCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEec
Q 009203 427 DFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDI 496 (540)
Q Consensus 427 ~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~ 496 (540)
+ .+++.|+.+ ..+.+||+.+..=. .+. .+.........+.+ ++++++.|+.+ ..+.+||+
T Consensus 207 ~---~i~v~GG~~~~~~~~~v~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 207 D---HIYVVGGFDGTAHLSSVEAYNIRTDSWT--TVT---SMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp T---EEEEECCBCSSSBCCCEEEEETTTTEEE--EEC---CCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred C---EEEEEeCCCCCcccceEEEEeCCCCcEE--ECC---CCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence 2 466666653 46899999865421 111 11111112233333 67788888765 35778888
Q ss_pred cC
Q 009203 497 RY 498 (540)
Q Consensus 497 ~~ 498 (540)
.+
T Consensus 277 ~~ 278 (301)
T 2vpj_A 277 II 278 (301)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.89 E-value=0.25 Score=45.18 Aligned_cols=216 Identities=14% Similarity=0.160 Sum_probs=105.0
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEEecCCCCC-ccccceeecccC
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLWSERDAED-SWKPKALHRNLH 373 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~-~~~~~~~~~~~~ 373 (540)
..+.+||+.+.. . ..+...+...... +++.. ++.+++.|+.+ ..+.+||+.+... .|.. +.....
T Consensus 31 ~~~~~~d~~~~~---W-~~~~~~p~~r~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~--~~~~p~ 101 (301)
T 2vpj_A 31 DVVEKYDPKTQE---W-SFLPSITRKRRYV-ASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS--VAPMNV 101 (301)
T ss_dssp CCEEEEETTTTE---E-EECCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE--ECCCSS
T ss_pred eEEEEEcCCCCe---E-EeCCCCChhhccc-cEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE--CCCCCC
Confidence 468889988652 1 1222212111112 22222 66778888765 4689999987651 0111 110001
Q ss_pred CcceeEEEeccCCCEEEEEeCC-----CeEEEEECCCCCeeeeecc--C-ccEEEEeecCCCCCceEEEEEcCC-----C
Q 009203 374 SSAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGVGRADFKHQI--E-SKCMSVLPNPCDFNLFMVQTGTPG-----R 440 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~d-----g 440 (540)
...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...... . .....+.. ++ .+++.|+.+ .
T Consensus 102 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~---~iyv~GG~~~~~~~~ 175 (301)
T 2vpj_A 102 RRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG---VIYCLGGYDGLNILN 175 (301)
T ss_dssp CCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT---EEEEECCBCSSCBCC
T ss_pred CccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC---EEEEECCCCCCcccc
Confidence 1111122222 56777777653 3688999887654322111 1 11112222 22 466666543 4
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCccccccccccccee
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANKPSQSIRAHQKRVF 515 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~i~ 515 (540)
.+.+||+.+..=.. .. .+.........+.+ ++.+++.|+.+ ..+.+||+.+.....+..+........
T Consensus 176 ~~~~~d~~~~~W~~--~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 248 (301)
T 2vpj_A 176 SVEKYDPHTGHWTN--VT---PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG 248 (301)
T ss_dssp CEEEEETTTTEEEE--EC---CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred eEEEEeCCCCcEEe--CC---CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence 68899987654211 11 11111112223333 67777888764 468999998632233322221111112
Q ss_pred EEEEcCCCCEEEEEEcCC-----cEEEEe
Q 009203 516 KAVWHYSHPLLISISSDL-----NIGLHK 539 (540)
Q Consensus 516 ~l~~s~~~~~l~s~~~dg-----~v~iw~ 539 (540)
.+.+ ++++++.|+.++ .|.+||
T Consensus 249 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd 275 (301)
T 2vpj_A 249 ATVL--RGRLYAIAGYDGNSLLSSIECYD 275 (301)
T ss_dssp EEEE--TTEEEEECCBCSSSBEEEEEEEE
T ss_pred EEEE--CCEEEEEcCcCCCcccccEEEEc
Confidence 2223 677778877663 455665
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.84 E-value=0.14 Score=48.52 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=91.3
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee---
Q 009203 383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI--- 454 (540)
Q Consensus 383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~--- 454 (540)
..+|..++++- ++.||.-++..+..-..... -..+..+..+|++ .+|+.. .+..|.|..+..+....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG---~lLAl~-g~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG---DLLCLF-NDNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS---SEEEEE-CSSEEEEEECCTTCSCCCCH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC---CEEEEe-cCCeEEEEEecCccccCccc
Confidence 34555555544 36788777764332222222 2245678889988 566665 45689998887332111
Q ss_pred --------eeeccccccCccccCeEEEEEcCC---CCEEEEEeCCCcEEEEeccCCCCccccccc---------ccccce
Q 009203 455 --------HAFGWKQESSESQSALINQSWSPD---GLYITSGSADPVIHLFDIRYSANKPSQSIR---------AHQKRV 514 (540)
Q Consensus 455 --------~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---------~h~~~i 514 (540)
..+...........+|..+.|+|- |..|++-..|+.|++||+.....++. .+. .....|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 111111111113568999999995 56899999999999999996433444 332 122468
Q ss_pred eEEEEcCCCCEEEEEE--cCCcEEE
Q 009203 515 FKAVWHYSHPLLISIS--SDLNIGL 537 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~--~dg~v~i 537 (540)
.+++|..++-.|...+ .+|-|+-
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEE
Confidence 8999999886555544 7787753
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.82 E-value=0.29 Score=44.83 Aligned_cols=215 Identities=11% Similarity=0.124 Sum_probs=104.0
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEEecCCCCCccccceeecccCC
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
..+.+||+.+.. -. .+...+.....- +++.. ++.+++.|+.+ ..+.+||..+.+- ..+......
T Consensus 30 ~~~~~~d~~~~~---W~-~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~ 98 (302)
T 2xn4_A 30 RSVECYDFKEER---WH-QVAELPSRRCRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQW----TSVANMRDR 98 (302)
T ss_dssp CCEEEEETTTTE---EE-EECCCSSCCBSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEE----EEECCCSSC
T ss_pred CcEEEEcCcCCc---Ee-EcccCCcccccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCce----eeCCCCCcc
Confidence 457888888652 11 122211111111 22222 66777787754 3588899887652 111111111
Q ss_pred cceeEEEeccCCCEEEEEeCCC-----eEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcC-------C
Q 009203 375 SAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTP-------G 439 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-------d 439 (540)
..-.+++. -++.+++.|+.++ .+.+||+.+.+-....... .....+... + .+++.|+. -
T Consensus 99 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~---~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 99 RSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVG--G---LLYAVGGYDVASRQCL 172 (302)
T ss_dssp CBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEET--T---EEEEECCEETTTTEEC
T ss_pred ccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEEC--C---EEEEEeCCCCCCCccc
Confidence 11112222 2567777777653 5788998876543221111 111122222 2 45555543 2
Q ss_pred CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCcccccccccccce
Q 009203 440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANKPSQSIRAHQKRV 514 (540)
Q Consensus 440 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~i 514 (540)
..+.+||+.+..=.. .. .+.........+.+ ++.+++.|+.+ ..+.+||+.+.....+..+......-
T Consensus 173 ~~~~~yd~~~~~W~~--~~---~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 173 STVECYNATTNEWTY--IA---EMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp CCEEEEETTTTEEEE--EC---CCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred cEEEEEeCCCCcEEE--CC---CCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 458899987654111 11 11111112223333 67788888764 46889998863222222222111111
Q ss_pred eEEEEcCCCCEEEEEEcCC-----cEEEEeC
Q 009203 515 FKAVWHYSHPLLISISSDL-----NIGLHKI 540 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~dg-----~v~iw~l 540 (540)
..+.+ ++++++.||.++ .|.+||+
T Consensus 246 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 246 GVCAV--NGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp EEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred eEEEE--CCEEEEECCcCCCcccccEEEEcC
Confidence 12222 677788887664 3677663
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.77 E-value=0.32 Score=44.60 Aligned_cols=216 Identities=10% Similarity=0.019 Sum_probs=107.5
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC----CcEEEEecCCCCCccccceeecccCC
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD----HAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
...+.+||..+.. -. .+...+........+.+ ++.+++.|+.+ ..+.+||+.+.+- ..+......
T Consensus 23 ~~~~~~~d~~~~~---W~-~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~ 91 (306)
T 3ii7_A 23 PQSCRYFNPKDYS---WT-DIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSW----YSKLGPPTP 91 (306)
T ss_dssp TTSEEEEETTTTE---EE-ECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEE----EEEECCSSC
T ss_pred CceEEEecCCCCC---Ee-cCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeE----EECCCCCcc
Confidence 4678899988752 11 22221111122222232 66778888755 5688999887652 111111111
Q ss_pred cceeEEEeccCCCEEEEEeCC------CeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcC-------
Q 009203 375 SAVMGVAGMQQKQIVLSAGAD------KRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTP------- 438 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~------- 438 (540)
..-.+++. -++.+++.|+.+ ..+.+||+.+.+-....... .....+.. .+ .+++.|+.
T Consensus 92 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~---~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 92 RDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG---LIYVCGGSLGNNVSG 165 (306)
T ss_dssp CBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT---EEEEECCEESCTTTC
T ss_pred ccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC---EEEEECCCCCCCCcc
Confidence 11112222 256777777765 45899999876543221111 11112222 12 45555543
Q ss_pred --CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCcccccccccc
Q 009203 439 --GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANKPSQSIRAHQ 511 (540)
Q Consensus 439 --dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~ 511 (540)
-..+.+||..+..=. .+. .+.........+.+ ++++++.|+.+ ..+.+||+.+.....+..+....
T Consensus 166 ~~~~~~~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 238 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWT--ELC---PMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238 (306)
T ss_dssp EECCCEEEEETTTTEEE--EEC---CCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred cccceEEEeCCCCCeEE--ECC---CccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence 345889998875411 111 11111112223333 67777777654 46889998863333333333222
Q ss_pred cceeEEEEcCCCCEEEEEEcC-----CcEEEEeC
Q 009203 512 KRVFKAVWHYSHPLLISISSD-----LNIGLHKI 540 (540)
Q Consensus 512 ~~i~~l~~s~~~~~l~s~~~d-----g~v~iw~l 540 (540)
.....+.+ ++.+++.||.+ ..+.+||+
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 22233333 67788888755 34666653
No 324
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.74 E-value=0.98 Score=49.76 Aligned_cols=280 Identities=9% Similarity=-0.038 Sum_probs=144.2
Q ss_pred EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCc----ceeecccccCCCCCCCCceeEEEecC----CCeEEEEeecCCC
Q 009203 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSG----ASLLSTTDCLSPKHRRWPEDIAWHPQ----GNSLFSAHTADSG 298 (540)
Q Consensus 227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~----~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~s~~~~~~~ 298 (540)
+|+++-. +.+|+.|+..|.=.+|.+...... ..+.... ..-++|.+++.... ...|++++- .+.
T Consensus 330 ssl~~l~--~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-----~N~~PI~D~~v~d~~~~~~~~i~~~sG-~g~ 401 (1158)
T 3ei3_A 330 ECLTYLD--NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-----TNLGPIVDMCVVDLERQGQGQLVTCSG-AFK 401 (1158)
T ss_dssp SEEEECS--TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-----CCCCSEEEEEEECTTSSSCCEEEEEEC-CGG
T ss_pred cEEEEEC--CCEEEEEEecCCcEEEEEecCCCCccceEEeEeee-----cCcCCceeEEEEccCCCCCCeEEEEEC-cCC
Confidence 4555553 447889998888888887654321 1111221 33467888877542 235665522 256
Q ss_pred CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC--CCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203 299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP--WENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+|.++++.-.-+ ......++- ++ -..++.+.... ....+|+.+..+.+ .|+.+.... ...+...+....
T Consensus 402 ~gsL~~lr~Gi~--~~~~~~~~l-~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~----veev~~~gf~~~ 472 (1158)
T 3ei3_A 402 EGSLRIIRNGIG--IHEHASIDL-PG-IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEE----VEETELMGFVDD 472 (1158)
T ss_dssp GCEEEEEEESBC--EEEEEEECC-CS-CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTE----EEEECCTTCCSS
T ss_pred CCeEEEEecCCC--EEEEEeecC-CC-ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCc----ccccccccccCC
Confidence 788988765433 222333322 22 23466665431 13457777666555 566553221 111111111111
Q ss_pred eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
...++... .+..++=.+. ..|++.+...+..+..... +..+...+.+.. .++.++ ++.+.++++..++..
T Consensus 473 ~~TL~~~~l~~~~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~-----~vvva~-g~~l~~fel~~~~L~ 545 (1158)
T 3ei3_A 473 QQTFFCGNVAHQQLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNSS-----QVVVAV-GRALYYLQIHPQELR 545 (1158)
T ss_dssp SCEEEEEEETTTEEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECSS-----EEEEEE-TTEEEEEEEETTEEE
T ss_pred CCcEEEEEcCCCeEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCCC-----EEEEEE-CCEEEEEEeeCCcee
Confidence 11111110 1223333333 2477777765444433332 234455554432 344444 578888887754321
Q ss_pred eeeeccccccCccccCeEEEEEcCC------CCEEEEEeC-CCcEEEEeccCCCCcccccccc-cccceeEEEEc--CCC
Q 009203 454 IHAFGWKQESSESQSALINQSWSPD------GLYITSGSA-DPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWH--YSH 523 (540)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~sp~------g~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s--~~~ 523 (540)
. .. . ..-...|.|+++.|. +.+++.|.. |++|+|+++.. .+.+....- ......++.+. ...
T Consensus 546 ~--~~-~---~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~--l~~~~~~~L~~~~~p~si~l~~~~~~ 617 (1158)
T 3ei3_A 546 Q--IS-H---TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS--FELLHKEMLGGEIIPRSILMTTFESS 617 (1158)
T ss_dssp E--EE-E---EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT--CCEEEEEECCSSCCEEEEEEEEETTE
T ss_pred e--ec-c---cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC--CCeEEEEECCCCCCCcEEEEEEeCCC
Confidence 1 11 0 112457999999863 478999997 99999999986 443322111 11223344332 233
Q ss_pred CEEEEEEcCCcEEEE
Q 009203 524 PLLISISSDLNIGLH 538 (540)
Q Consensus 524 ~~l~s~~~dg~v~iw 538 (540)
.+|..|-.||.+.-+
T Consensus 618 ~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 618 HYLLCALGDGALFYF 632 (1158)
T ss_dssp EEEEEEETTSEEEEE
T ss_pred cEEEEEeCCCeEEEE
Confidence 578888889887544
No 325
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.71 E-value=0.32 Score=45.84 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=104.2
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC-CcccceeEEEEeCCCCCEEEEEec-C---------CcEEE
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP-HVKGIINSIIFLPWENPCFATGGS-D---------HAVVL 353 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~-d---------g~i~i 353 (540)
++.+++.| |.....+.+||+.+... . -..+...+ .......++.+ ++.+++.|+. + ..+.+
T Consensus 19 ~~~iyv~G---G~~~~~~~~~d~~~~~~-~-W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~ 90 (357)
T 2uvk_A 19 NDTVYIGL---GSAGTAWYKLDTQAKDK-K-WTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHK 90 (357)
T ss_dssp TTEEEEEC---GGGTTCEEEEETTSSSC-C-EEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEE
T ss_pred CCEEEEEe---CcCCCeEEEEccccCCC-C-eeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEE
Confidence 55555555 12345788899874211 1 12222211 11111222222 5677777776 2 46889
Q ss_pred EecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCC-------------------------------------
Q 009203 354 WSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGAD------------------------------------- 395 (540)
Q Consensus 354 wd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d------------------------------------- 395 (540)
||+.+.+- ..+.... ....-.+++. .++.+++.|+.+
T Consensus 91 yd~~~~~W----~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 2uvk_A 91 YNPKTNSW----VKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYF 165 (357)
T ss_dssp EETTTTEE----EECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGC
T ss_pred EeCCCCcE----EECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccC
Confidence 99987652 1111111 1111111222 467888888754
Q ss_pred --CeEEEEECCCCCeeeeeccC--ccE-EEEeecCCCCCceEEEEEcC------CCeEEEEECCCCcceeeeeccccccC
Q 009203 396 --KRIIGFDAGVGRADFKHQIE--SKC-MSVLPNPCDFNLFMVQTGTP------GRQLRLYDIRLRQTEIHAFGWKQESS 464 (540)
Q Consensus 396 --g~i~iwd~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~ 464 (540)
..+.+||+.+.+-....... ... .+++... + .+++.|+. ...+.+||+........... .+.
T Consensus 166 ~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~-~---~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~---~~~ 238 (357)
T 2uvk_A 166 FNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKG-D---KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA---PVS 238 (357)
T ss_dssp CCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEET-T---EEEEECCEEETTEECCCEEEEECC---CEEEECC---CSS
T ss_pred CcccEEEEeCCCCcEEECCCCCCCCcccccEEEEC-C---EEEEEeeecCCCcccCceEEEEecCCCCcEEecC---CCC
Confidence 57899999876543322111 111 2222222 1 45555543 34577788732222222111 111
Q ss_pred ccc--cCeEEEEEcCCCCEEEEEeCC----------------------CcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203 465 ESQ--SALINQSWSPDGLYITSGSAD----------------------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520 (540)
Q Consensus 465 ~~~--~~v~~~~~sp~g~~l~sg~~d----------------------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s 520 (540)
... .....+.+ ++.+++.|+.+ ..+.+||+.+.....+..+......-.++.
T Consensus 239 ~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-- 314 (357)
T 2uvk_A 239 SPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP-- 314 (357)
T ss_dssp TTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--
T ss_pred CCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--
Confidence 111 11122333 67777777632 257889988643444433332222212222
Q ss_pred CCCCEEEEEEcCC
Q 009203 521 YSHPLLISISSDL 533 (540)
Q Consensus 521 ~~~~~l~s~~~dg 533 (540)
.++++++.||.++
T Consensus 315 ~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 315 WNNSLLIIGGETA 327 (357)
T ss_dssp ETTEEEEEEEECG
T ss_pred eCCEEEEEeeeCC
Confidence 3778888888654
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.61 E-value=0.41 Score=43.72 Aligned_cols=235 Identities=10% Similarity=0.038 Sum_probs=135.0
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203 228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL 307 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~ 307 (540)
+.-.+| ..+.||.-. ..++.|+|+++...+....- ...|.-=.|-.+. .|+.. .+..|+.|++
T Consensus 71 sAIMnP-~~~ViALra-g~~LQiFnletK~klks~~~---------~e~VvfWkWis~~-~L~lV-----T~taVyHWs~ 133 (365)
T 2xzh_A 71 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---------TDDVTFWKWISLN-TVALV-----TDNAVYHWSM 133 (365)
T ss_dssp EEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---------SSCEEEEEECSSS-EEEEE-----ESSEEEEEES
T ss_pred eeeeCC-CccEEEEec-CCeEEEechHHhhhhcceec---------CCccEEEEecCCC-eEEEE-----cCCcEEEEcc
Confidence 344588 478887776 57899999998766555532 2346666666544 44443 3788999999
Q ss_pred CCCCCceeEEeecCCCC-cccceeEEEEeCCCCCEEEEEec-------CCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 308 NKTKGRACVTFLDDKPH-VKGIINSIIFLPWENPCFATGGS-------DHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
... ......++.++. ....|.....++ +.++++..+- .|.+.+|..+.+.. +.+ ++|...-..
T Consensus 134 ~~~--s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s----Q~i--eGhaa~F~~ 204 (365)
T 2xzh_A 134 EGE--SQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPI--EGHAASFAQ 204 (365)
T ss_dssp STT--CCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTEE----EEE--CCSEEEEEE
T ss_pred cCC--CCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeeccccc----cee--eeeeeeeEE
Confidence 853 344555554321 134577778888 8888765442 37789999987652 333 456554433
Q ss_pred EEec--cC-CCEEEEEeC---CCeEEEEECCCC---Ceeee-------ec---cCccEEEEeecCCCCCceEEEEEcCCC
Q 009203 380 VAGM--QQ-KQIVLSAGA---DKRIIGFDAGVG---RADFK-------HQ---IESKCMSVLPNPCDFNLFMVQTGTPGR 440 (540)
Q Consensus 380 l~~s--~~-~~~l~~~~~---dg~i~iwd~~~~---~~~~~-------~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg 440 (540)
+.+. +. ..+++.+.. .+.+++.++... ...+. +. ......++..++.. ..+..-+.-|
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky---gviyviTK~G 281 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH---DVVFLITKYG 281 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT---TEEEEEETTS
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccC---CEEEEEeCCc
Confidence 3331 11 123333332 258999998542 11110 00 12233444444332 3566667789
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.|++||+.++.+..... . ....|...+.+.+..-++.....|.|.--.++.
T Consensus 282 ~ihlyDleTgt~i~~nr-----I--S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 282 YIHLYDLETGTCIYMNR-----I--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEEETTTCCEEEEEE-----C--CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EEEEEEcccCcEEEEec-----c--CCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 99999999998755321 1 123344334433333344444777777666664
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.54 E-value=0.46 Score=43.50 Aligned_cols=228 Identities=11% Similarity=0.057 Sum_probs=112.2
Q ss_pred CcEEEEEeCC--ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC----CeEEEEecCC
Q 009203 236 EQLFVTSALD--GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD----SQISVLNLNK 309 (540)
Q Consensus 236 ~~~l~tg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d----~~i~vwd~~~ 309 (540)
+.+++.|+.+ ..+.+||..+.+. ........ . ... .+++. -++.+++.| +.+ ..+.+||..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W--~~~~~~p~---~-r~~-~~~~~-~~~~lyv~G----G~~~~~~~~~~~~d~~~ 79 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSW--TDIRCPFE---K-RRD-AACVF-WDNVVYILG----GSQLFPIKRMDCYNVVK 79 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEE--EECCCCSC---C-CBS-CEEEE-ETTEEEEEC----CBSSSBCCEEEEEETTT
T ss_pred ceEEEEeCCCCCceEEEecCCCCCE--ecCCCCCc---c-cce-eEEEE-ECCEEEEEe----CCCCCCcceEEEEeCCC
Confidence 4566666653 5688888877542 22111111 1 111 12222 355566665 433 6788899887
Q ss_pred CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC------CcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203 310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 383 (540)
..- ..+..+ +........+.+ ++.+++.|+.+ ..+.+||..+..- ..+........-.+++.
T Consensus 80 ~~W-~~~~~~---p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~- 147 (306)
T 3ii7_A 80 DSW-YSKLGP---PTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESW----HTKPSMLTQRCSHGMVE- 147 (306)
T ss_dssp TEE-EEEECC---SSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEE----EEECCCSSCCBSCEEEE-
T ss_pred CeE-EECCCC---CccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCce----EeCCCCcCCcceeEEEE-
Confidence 521 111111 111121222223 66777888765 4588999987652 11111001111112222
Q ss_pred cCCCEEEEEeC---------CCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCC-----CeEEEEE
Q 009203 384 QQKQIVLSAGA---------DKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPG-----RQLRLYD 446 (540)
Q Consensus 384 ~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d 446 (540)
-++.+++.|+. -..+.+||+.+.+-....... .....+.. .+ .+++.|+.+ ..+.+||
T Consensus 148 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---~i~v~GG~~~~~~~~~~~~yd 222 (306)
T 3ii7_A 148 ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KD---KIFAVGGQNGLGGLDNVEYYD 222 (306)
T ss_dssp ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT---EEEEECCEETTEEBCCEEEEE
T ss_pred ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CC---EEEEEeCCCCCCCCceEEEee
Confidence 25667676653 345889999876543221111 11112222 22 466666543 4688999
Q ss_pred CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCC
Q 009203 447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYS 499 (540)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~ 499 (540)
+.+..= ..+. .+.........+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 223 ~~~~~W--~~~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 223 IKLNEW--KMVS---PMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp TTTTEE--EECC---CCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCcE--EECC---CCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 886541 1111 11112222333444 67788888754 46888888863
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.47 E-value=0.52 Score=43.25 Aligned_cols=228 Identities=8% Similarity=-0.006 Sum_probs=109.4
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec----C-----CcEEEEe
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS----D-----HAVVLWS 355 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----d-----g~i~iwd 355 (540)
++.+++.|...+..-..+.+||..+.. .. .+...+...... +++.. ++.+++.|+. + ..+.+||
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~---W~-~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGT---WL-RLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTE---EE-ECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCe---Ee-ECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEEC
Confidence 455666651111123468889988652 11 122211111111 22222 5677777775 2 4588899
Q ss_pred cCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCC-----CeEEEEECCCCCeeeeeccC---ccEEEEeecCC
Q 009203 356 ERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGVGRADFKHQIE---SKCMSVLPNPC 426 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~ 426 (540)
+.+.+- ..+.... .......+.+ ++.+++.|+.+ ..+.+||+.+.+-....... .....+.. .
T Consensus 97 ~~~~~W----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 168 (308)
T 1zgk_A 97 PMTNQW----SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--N 168 (308)
T ss_dssp TTTTEE----EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T
T ss_pred CCCCeE----eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--C
Confidence 887652 1111100 1111122222 56777776643 35889999876543221111 11122222 2
Q ss_pred CCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEec
Q 009203 427 DFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDI 496 (540)
Q Consensus 427 ~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~ 496 (540)
+ .+++.|+.+ ..+.+||+.+..=. ... .+.........+.+ ++.+++.|+.+ ..+.+||+
T Consensus 169 ~---~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 169 R---LLYAVGGFDGTNRLNSAECYYPERNEWR--MIT---AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp T---EEEEECCBCSSCBCCCEEEEETTTTEEE--ECC---CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred C---EEEEEeCCCCCCcCceEEEEeCCCCeEe--eCC---CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence 2 466666543 45889998765411 111 11111122233333 67778888764 56899998
Q ss_pred cCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC-----cEEEEe
Q 009203 497 RYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL-----NIGLHK 539 (540)
Q Consensus 497 ~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg-----~v~iw~ 539 (540)
.+.....+..+.........+.+ ++++++.||.++ .|.+||
T Consensus 239 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd 284 (308)
T 1zgk_A 239 ETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYD 284 (308)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEE
T ss_pred CCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEc
Confidence 86332333322221111122222 667778877553 455665
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.43 E-value=0.67 Score=44.12 Aligned_cols=235 Identities=11% Similarity=0.040 Sum_probs=140.1
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203 228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL 307 (540)
Q Consensus 228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~ 307 (540)
+.-.+| ..+.||.-. ..++.|+|+++...+....- ...|.-=.|-.+ +.|+.. .+..|+.|++
T Consensus 70 sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~---------~e~VvfWkWis~-~~l~lV-----T~taVyHWsi 132 (494)
T 1bpo_A 70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---------TDDVTFWKWISL-NTVALV-----TDNAVYHWSM 132 (494)
T ss_dssp EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC---------SSCCCEEEEEET-TEEEEE-----CSSEEEEEES
T ss_pred eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec---------CCCceEEEecCC-CeEEEE-----cCCeeEEecc
Confidence 445678 477777765 57899999998766555432 234666677654 355554 4788999999
Q ss_pred CCCCCceeEEeecCCCC-cccceeEEEEeCCCCCEEEEEe-------cCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203 308 NKTKGRACVTFLDDKPH-VKGIINSIIFLPWENPCFATGG-------SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 379 (540)
... ......++.++. ....|.....++ +.++++..+ -.|.+.+|..+.+. .+.+ ++|......
T Consensus 133 ~~~--s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~----sQ~i--eGhaa~F~~ 203 (494)
T 1bpo_A 133 EGE--SQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPI--EGHAASFAQ 203 (494)
T ss_dssp SSS--CCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCC----EEEE--CCSEEEEEE
T ss_pred cCC--CCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccc----cchh--eeeeeeeEE
Confidence 753 345555554332 134577778888 888876543 24778999998875 2444 557655554
Q ss_pred EEeccC---CCEEEEEeC---CCeEEEEECCCC---Ceeee-------ec---cCccEEEEeecCCCCCceEEEEEcCCC
Q 009203 380 VAGMQQ---KQIVLSAGA---DKRIIGFDAGVG---RADFK-------HQ---IESKCMSVLPNPCDFNLFMVQTGTPGR 440 (540)
Q Consensus 380 l~~s~~---~~~l~~~~~---dg~i~iwd~~~~---~~~~~-------~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg 440 (540)
+...-+ ..+++.+.. .+.+++.++... ...+. +. ......++..++.. ..+..-+.-|
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky---gviyviTK~G 280 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH---DVVFLITKYG 280 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT---TEEEEEETTS
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC---CEEEEEecCc
Confidence 444211 123444443 278999998543 11110 00 12334455555443 3566667889
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
.|.+||+.++.+..... -....|...+.+....-++.....|.|.--.++.
T Consensus 281 ~i~lyDleTgt~i~~nr-------Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNR-------ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEEEETTTCCEEEEEE-------CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred eEEEEecccceeeeeec-------ccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 99999999998755321 1123444444444444444455777777666664
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.42 E-value=0.54 Score=42.92 Aligned_cols=186 Identities=12% Similarity=0.162 Sum_probs=92.5
Q ss_pred CCCeEEEEeecCCCC-----CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-----cEEEE
Q 009203 285 QGNSLFSAHTADSGD-----SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-----AVVLW 354 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-----~i~iw 354 (540)
++.+++.| +.+ ..+.+||..+.. - ..+...+........+.+ ++.+++.|+.++ .+.+|
T Consensus 61 ~~~lyv~G----G~~~~~~~~~~~~~d~~~~~---W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~ 129 (302)
T 2xn4_A 61 AGLVFAVG----GFNGSLRVRTVDSYDPVKDQ---W-TSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAY 129 (302)
T ss_dssp TTEEEEES----CBCSSSBCCCEEEEETTTTE---E-EEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEE
T ss_pred CCEEEEEe----CcCCCccccceEEECCCCCc---e-eeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEE
Confidence 55566665 433 458889988652 1 112221211122222222 667788887653 47888
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-------CeEEEEECCCCCeeeeecc--C-ccEEEEeec
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-------KRIIGFDAGVGRADFKHQI--E-SKCMSVLPN 424 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~ 424 (540)
|+.+.+- ..+........-.+++.. ++.+++.|+.+ ..+.+||+.+++-...... . .....+...
T Consensus 130 d~~~~~W----~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 204 (302)
T 2xn4_A 130 NIKSNEW----FHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLN 204 (302)
T ss_dssp ETTTTEE----EEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred eCCCCeE----eecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEEC
Confidence 9887652 111111111111122222 56777776542 3588999987654322111 1 111222222
Q ss_pred CCCCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEE
Q 009203 425 PCDFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-----VIHLF 494 (540)
Q Consensus 425 ~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-----~i~iw 494 (540)
+ .+++.|+.+ ..+.+||+.+..=. .+. ...........+.+ ++.+++.|+.++ .+.+|
T Consensus 205 --~---~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~~---~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y 272 (302)
T 2xn4_A 205 --N---LLYAVGGHDGPLVRKSVEVYDPTTNAWR--QVA---DMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYY 272 (302)
T ss_dssp --T---EEEEECCBSSSSBCCCEEEEETTTTEEE--EEC---CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred --C---EEEEECCCCCCcccceEEEEeCCCCCEe--eCC---CCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEE
Confidence 2 566666553 46889999865411 111 11111111222333 677888887653 48899
Q ss_pred eccC
Q 009203 495 DIRY 498 (540)
Q Consensus 495 d~~~ 498 (540)
|+.+
T Consensus 273 d~~~ 276 (302)
T 2xn4_A 273 NPTT 276 (302)
T ss_dssp ETTT
T ss_pred cCCC
Confidence 9886
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.28 E-value=0.09 Score=45.01 Aligned_cols=154 Identities=6% Similarity=0.004 Sum_probs=83.1
Q ss_pred ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-ccc--cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203 328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAED-SWK--PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG 404 (540)
Q Consensus 328 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~--~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~ 404 (540)
.+..++|+| ++.+.+. .+|.++-.+..+... .|. ...+-..+... -.++.|.|+|.+.++ .||.|+-++.-
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 477999999 9987777 678777766654321 000 01111011111 478899999988887 56999888864
Q ss_pred CCCeee-------eec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc-cCccccCeEEEEE
Q 009203 405 VGRADF-------KHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE-SSESQSALINQSW 475 (540)
Q Consensus 405 ~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~ 475 (540)
+...-. ... .=.....+.+.|++ .|.+.. |+.++-....+...... +..... ....-....-+.|
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G----~Lyav~-dg~lyr~~~P~~~~~~w-l~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNG----YLYAVH-GQQFYKALPPVSNQDNW-LARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTS----CEEEEE-TTEEEEECCCSSTTCCH-HHHCEEEESSSGGGEEEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCc----eEEEEe-CCcEEecCCCCCCCccc-ccccceeccCCcceEEEEEE
Confidence 322111 011 11356788899988 344444 77754433322111000 000000 0122223455779
Q ss_pred cCCCCEEEEEeCCCcEEEEecc
Q 009203 476 SPDGLYITSGSADPVIHLFDIR 497 (540)
Q Consensus 476 sp~g~~l~sg~~dg~i~iwd~~ 497 (540)
+++|.+.++. +|. +|...
T Consensus 190 ~~~G~l~~v~--~g~--~Y~~~ 207 (236)
T 1tl2_A 190 SSVGTLFGVQ--GGK--FYEDY 207 (236)
T ss_dssp CTTSCEEEEE--TTE--EEEES
T ss_pred CCCCcEEEEe--CCe--EEecC
Confidence 9999877766 664 44444
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.07 E-value=0.85 Score=41.78 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=86.0
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEEecCCCCCccccceeecccCC
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLWSERDAEDSWKPKALHRNLHS 374 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~ 374 (540)
..+.+||+.+.. . ..+...+........+.+ ++.+++.|+.+ ..+.+||+.+.+- ..+......
T Consensus 90 ~~~~~~d~~~~~---W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~ 158 (308)
T 1zgk_A 90 SALDCYNPMTNQ---W-SPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTR 158 (308)
T ss_dssp CCEEEEETTTTE---E-EECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSC
T ss_pred ceEEEECCCCCe---E-eECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCcc
Confidence 468889988652 1 112211111122222333 66777777643 3588899887652 111110011
Q ss_pred cceeEEEeccCCCEEEEEeCC-----CeEEEEECCCCCeeeeecc--C-ccEEEEeecCCCCCceEEEEEcCC-----Ce
Q 009203 375 SAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGVGRADFKHQI--E-SKCMSVLPNPCDFNLFMVQTGTPG-----RQ 441 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~d-----g~ 441 (540)
..-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...... . .....+.. .+ .+++.|+.+ ..
T Consensus 159 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---~iyv~GG~~~~~~~~~ 232 (308)
T 1zgk_A 159 RIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN---CIYAAGGYDGQDQLNS 232 (308)
T ss_dssp CBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT---EEEEECCBCSSSBCCC
T ss_pred ccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC---EEEEEeCCCCCCccce
Confidence 111122222 56777777654 4588999987653322111 1 11122222 22 466666554 56
Q ss_pred EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccC
Q 009203 442 LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRY 498 (540)
Q Consensus 442 v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~ 498 (540)
+.+||+.+..=. .+. .+.........+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 233 v~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 233 VERYDVETETWT--FVA---PMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEEEETTTTEEE--ECC---CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred EEEEeCCCCcEE--ECC---CCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC
Confidence 899999865411 111 11111112223333 67778888754 3577888875
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.86 E-value=1.1 Score=41.23 Aligned_cols=208 Identities=12% Similarity=0.109 Sum_probs=100.0
Q ss_pred CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec----C-------CcEEEEecCCCCCcccccee
Q 009203 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS----D-------HAVVLWSERDAEDSWKPKAL 368 (540)
Q Consensus 300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~~~~~ 368 (540)
..+.+||..+.+ .....+.. ............ ++.+++.|+. + ..+.+||..+.+- ..+
T Consensus 13 ~~~~~yd~~~~~--W~~~~~~~---p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W----~~~ 82 (315)
T 4asc_A 13 EGAVAYDPAANE--CYCASLSS---QVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW----LGM 82 (315)
T ss_dssp TEEEEEETTTTE--EEEEECCC---CSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE----EEC
T ss_pred CceEEECCCCCe--EecCCCCC---CCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeE----EEC
Confidence 679999998762 22222221 111122222334 7788888874 1 1277888887652 111
Q ss_pred ecccCCcceeEEEeccCCCEEEEEeCC--------CeEEEEECCCCCeeeeecc--C-ccEEEEeecCCCCCceEEEEEc
Q 009203 369 HRNLHSSAVMGVAGMQQKQIVLSAGAD--------KRIIGFDAGVGRADFKHQI--E-SKCMSVLPNPCDFNLFMVQTGT 437 (540)
Q Consensus 369 ~~~~~~~~v~~l~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~ 437 (540)
........-.+++.. ++.+++.|+.+ ..+.+||+.+++-...... . .....+... + .+++.|+
T Consensus 83 ~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~---~iyv~GG 156 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHM--D---LVYVIGG 156 (315)
T ss_dssp CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET--T---EEEEECC
T ss_pred CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEEC--C---EEEEEeC
Confidence 110011111122222 56677777632 3588999987653222111 1 111122222 1 4566665
Q ss_pred C-C-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeccCCCCccccc
Q 009203 438 P-G-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-----VIHLFDIRYSANKPSQS 506 (540)
Q Consensus 438 ~-d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-----~i~iwd~~~~~~~~~~~ 506 (540)
. + ..+.+||..+..= .... .+.........+.+ ++++++.|+.++ .+.+||+.+.....+..
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W--~~~~---~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEW--KELA---PMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEE--EECC---CCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred CCCCCcccceEEEEeCCCCeE--EECC---CCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 4 2 4689999886541 1110 11111112223333 677888887654 47888888632233332
Q ss_pred ccccccceeEEEEcCCCCEEEEEEcC
Q 009203 507 IRAHQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 507 ~~~h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
+.........+.+ ++++++.||.+
T Consensus 230 ~p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 230 FPQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred CCCcccceeEEEE--CCEEEEECCcc
Confidence 2211111222233 66777888764
No 334
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.74 E-value=2.5 Score=44.45 Aligned_cols=272 Identities=11% Similarity=0.061 Sum_probs=143.5
Q ss_pred cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203 223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI 302 (540)
Q Consensus 223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i 302 (540)
...|.++....+ + .|..|+.+| +..||..+... .... ......|.++.. .+| .|..+ +.+ -|
T Consensus 62 ~~~i~~i~~d~~-g-~lWigT~~G-l~~yd~~~~~f----~~~~----~~~~~~i~~i~~-~~g-~lWig----t~~-Gl 123 (758)
T 3ott_A 62 NTRIYCGVIIDN-T-YLYMGTDNG-ILVYNYRADRY----EQPE----TDFPTDVRTMAL-QGD-TLWLG----ALN-GL 123 (758)
T ss_dssp SSCEEEEEEETT-T-EEEEEETTE-EEEEETTTTEE----CCCS----CCCCSCEEEEEE-ETT-EEEEE----ETT-EE
T ss_pred CceEEEEEEcCC-C-cEEEEeCCC-eEEEeCCCCEE----ECcc----cCCCceEEEEEe-cCC-cEEEE----cCC-cc
Confidence 356899888763 5 455666665 77899876432 1110 111234666654 355 45554 444 57
Q ss_pred EEEecCCCCCceeEEeecC--CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc----CCcc
Q 009203 303 SVLNLNKTKGRACVTFLDD--KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL----HSSA 376 (540)
Q Consensus 303 ~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~ 376 (540)
..+|..++. +..+.. .......|.++.... ++.+.+ |+.+ -|..|+..++.. ..+.... ....
T Consensus 124 ~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~----~~~~~~~~~~~~~~~ 192 (758)
T 3ott_A 124 YTYQLQSRK----LTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKF----EGIPLPVHSSQSNLF 192 (758)
T ss_dssp EEEETTTCC----EEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEE----EEECCCCCTTCSSCC
T ss_pred eeEeCCCCe----EEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCce----EEecCCCccccccce
Confidence 888887542 222210 001124588888776 665554 5544 477888776542 1111110 1234
Q ss_pred eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
|.++...+++..|..|+. +-+..+|..+++...... ....+.++..+..+ .|..|+. +.+.+++..+......
T Consensus 193 i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g----~lWigT~-~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 193 VNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG----DLLAGTD-NGLYVYHNDTTPLQHI 266 (758)
T ss_dssp EEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC----CEEEEET-TEEEEECCTTSCCEEE
T ss_pred eEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC----CEEEEeC-CceeEEecCCCcEEEE
Confidence 888888777776666664 468889987765432211 12345666666655 3444443 4688888776542211
Q ss_pred eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc--ccc--ccccceeEEEEcCCCCEEEEEEc
Q 009203 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ--SIR--AHQKRVFKAVWHYSHPLLISISS 531 (540)
Q Consensus 456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~--~h~~~i~~l~~s~~~~~l~s~~~ 531 (540)
.........-....|.++..+.+|.+-+ |+..| +.++..... ..... ... .....|.++.-..+|.+.+.. .
T Consensus 267 ~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~ 342 (758)
T 3ott_A 267 IHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-A 342 (758)
T ss_dssp CCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-T
T ss_pred EcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEee-C
Confidence 1000000011234689999888876544 44556 555433210 11110 000 112468888888888766543 4
Q ss_pred CC
Q 009203 532 DL 533 (540)
Q Consensus 532 dg 533 (540)
+|
T Consensus 343 ~G 344 (758)
T 3ott_A 343 NG 344 (758)
T ss_dssp TE
T ss_pred Cc
Confidence 55
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.70 E-value=1.2 Score=40.65 Aligned_cols=176 Identities=7% Similarity=0.060 Sum_probs=94.8
Q ss_pred EecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-------------
Q 009203 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD------------- 348 (540)
Q Consensus 282 ~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------------- 348 (540)
|+.+|..|+.... ..++.|...+.+.. ....+.. .. +--+++ ++.+|+.+...
T Consensus 21 ~~~~g~~iy~~n~--~d~~~ly~~~~dg~-~~~~l~~--------~~--~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n 86 (302)
T 3s25_A 21 FCESDGEVFFSNT--NDNGRLYAMNIDGS-NIHKLSN--------DT--AMYINA-DKNYVYYVRNNNQKITSQTFFSYD 86 (302)
T ss_dssp EEEETTEEEEEEG--GGTTEEEEEETTSC-SCEEEEE--------EE--EEEEEE-CSSEEEEEEECC------CCSSCC
T ss_pred EEEeCCEEEEEeC--CCCceEEEEcCCCC-CCEEccC--------Cc--eeeEEE-cCCEEEEEECCCCcccccceeccC
Confidence 4567777777621 23566777776532 2222221 11 234567 77787766543
Q ss_pred -CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe----CCCeEEEEECCCCCeeeeeccCccEEEEee
Q 009203 349 -HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG----ADKRIIGFDAGVGRADFKHQIESKCMSVLP 423 (540)
Q Consensus 349 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 423 (540)
..|+..++...+. ..+. .. .+..|+++++.|+... .+..|+..++............. ..+
T Consensus 87 ~~~Iy~i~~dg~~~----~~l~----~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~ 152 (302)
T 3s25_A 87 RNSLCRIKRNGHGS----TVLD----PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTC 152 (302)
T ss_dssp SEEEEEEETTSCCC----EEEE----CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCS
T ss_pred CCeEEEEeCCCCcc----eEee----cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEe
Confidence 3577778777652 2222 11 1236777888888776 34467777776443322222222 234
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC--CcEEEEeccC
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD--PVIHLFDIRY 498 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d--g~i~iwd~~~ 498 (540)
++.+. .+..+......|.+.++........ + . +.. ...++|++.+|+-...+ ..|..-+++.
T Consensus 153 ~~~g~--~iy~t~~g~~~Iy~~~l~g~~~~~l-~------~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 153 NTSDR--YFYYNNPKNGQLYRYDTASQSEALF-Y------D---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp EEETT--EEEEECTTTCCEEEEETTTTEEEEE-E------C---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred eEECC--EEEEEeCCCceEEEEECCCCCEEEE-e------C---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 44442 2344444467888888876553221 1 1 112 23456999888866543 3566666664
No 336
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.60 E-value=2.8 Score=44.08 Aligned_cols=284 Identities=8% Similarity=-0.009 Sum_probs=141.9
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ 301 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~ 301 (540)
..|.++.-..+ |.+. .|+.+| +..++..++.. ...+... .....-....|.++.-..+|.+-+ | + ++-
T Consensus 324 ~~v~~i~~D~~-g~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~v~~i~~d~~g~lWi-g----t-~~G 393 (758)
T 3ott_A 324 NQFYSLFRDSK-GFYW-FGGANG-LIRFTDPAGERHDAIWYRMG-DKTYPLSHNRIRHIYEDKEQQLWI-A----T-DGS 393 (758)
T ss_dssp CBEEEEEECTT-CCEE-EEETTE-EEEESCTTSSCCCCEEECTT-CSSSCCSCSCEEEEEECTTSCEEE-E----E-TTE
T ss_pred ceEEEEEEcCC-CCEE-EeeCCc-ceeecccccccceeEEeccC-CcCCCCCCCceEEEEECCCCCEEE-E----e-CCc
Confidence 46888888774 5544 445555 55565544321 1111100 000011224578887777776444 4 4 356
Q ss_pred EEEEecCCCCCceeEEeecCCC-CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC-----CCccccceee-cc-cC
Q 009203 302 ISVLNLNKTKGRACVTFLDDKP-HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA-----EDSWKPKALH-RN-LH 373 (540)
Q Consensus 302 i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~-~~-~~ 373 (540)
|..||..++.. .......... .....|.++...+ ++ .|..|+..+-|.++|..+. .......... .. ..
T Consensus 394 L~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~d~-~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (758)
T 3ott_A 394 INRYDYATRQF-IHYNIVDNTGTYNTNWTYYIFEDT-AG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLS 470 (758)
T ss_dssp EEEEETTTTEE-EEEEEECCC--CBSSSEEEEEECT-TS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCS
T ss_pred HhhcCcCCCcE-EEeecCCCcCCCCCceEEEEEEcC-CC-CEEEEECCCceEEEccccccccCCcceecccccccccccc
Confidence 88899876521 1111111100 0124578887765 55 4556776666888886531 1000000000 01 12
Q ss_pred CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec----cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ----IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
...|.++...++|.+.+.++..+-|..+|..+++...... ....+.++..+..+ .|..|+. +.+..||..+
T Consensus 471 ~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g----~lWigt~-~Gl~~~~~~~ 545 (758)
T 3ott_A 471 GMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG----LLWVGFH-GGVMRINPKD 545 (758)
T ss_dssp CSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS----CEEEEET-TEEEEECC--
T ss_pred cceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC----CEEEEec-CceEEEecCC
Confidence 3458899988888877644444558889998765433211 12345667666655 2333444 4588888765
Q ss_pred CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEc-CCCCEEEE
Q 009203 450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH-YSHPLLIS 528 (540)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s-~~~~~l~s 528 (540)
...... .. ..+. ...|.++... +|. |..++.+| |..||..+. . +..+......+....+. ++| .|..
T Consensus 546 ~~~~~~--~~-~gl~--~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~G-~l~f 613 (758)
T 3ott_A 546 ESQQSI--SF-GSFS--NNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTM--D-ARQQNMTNKRFTSLLFDPKED-CVYL 613 (758)
T ss_dssp CCCCBC--CC-CC-----CCEEEEEEE-TTE-EEEEESSC-EEEEETTTC--C-EEEC--CCCCCSEEEEETTTT-EEEE
T ss_pred CceEEe--cc-cCCC--ccceEEEEEC-CCC-EEEECCCC-eEEEcCCCc--e-eEEecCCCCceeeeEEECCCC-cEEE
Confidence 542211 00 0111 2457777764 554 55555666 778888752 2 22211112233344444 455 4666
Q ss_pred EEcCCcEEE
Q 009203 529 ISSDLNIGL 537 (540)
Q Consensus 529 ~~~dg~v~i 537 (540)
|+.+|-+.+
T Consensus 614 G~~~Gl~~f 622 (758)
T 3ott_A 614 GGADGFGIS 622 (758)
T ss_dssp ECBSEEEEE
T ss_pred ecCCceEEE
Confidence 677776554
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.46 E-value=1.5 Score=40.23 Aligned_cols=208 Identities=12% Similarity=0.156 Sum_probs=97.1
Q ss_pred eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec----CC-------cEEEEecCCCCCccccceee
Q 009203 301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS----DH-------AVVLWSERDAEDSWKPKALH 369 (540)
Q Consensus 301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~ 369 (540)
.+..||..+.+ .....+... ........... ++.+++.|+. ++ .+.+||..+.+- ..+.
T Consensus 25 ~~~~yd~~~~~--W~~~~~~~~---~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W----~~~~ 94 (318)
T 2woz_A 25 AAVAYDPMENE--CYLTALAEQ---IPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW----VGLP 94 (318)
T ss_dssp EEEEEETTTTE--EEEEEECTT---SCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEE----EECS
T ss_pred ceEEECCCCCc--eecccCCcc---CCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcE----EECC
Confidence 48899988762 222222210 11112222233 7788888873 12 177888877652 1111
Q ss_pred cccCCcceeEEEeccCCCEEEEEeCC-------CeEEEEECCCCCeeeeeccCcc--EEEEeecCCCCCceEEEEEcC--
Q 009203 370 RNLHSSAVMGVAGMQQKQIVLSAGAD-------KRIIGFDAGVGRADFKHQIESK--CMSVLPNPCDFNLFMVQTGTP-- 438 (540)
Q Consensus 370 ~~~~~~~v~~l~~s~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-- 438 (540)
.......-.+++.. ++.+++.|+.+ ..+.+||+.+.+-......... ..+++.. .+ .+++.|+.
T Consensus 95 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~---~iyv~GG~~~ 169 (318)
T 2woz_A 95 PLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH-NG---MIYCLGGKTD 169 (318)
T ss_dssp CBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE-TT---EEEEECCEES
T ss_pred CCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE-CC---EEEEEcCCCC
Confidence 10011111122222 56777777754 2588899887654322111111 1111111 22 45566543
Q ss_pred ----CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCcccccccc
Q 009203 439 ----GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANKPSQSIRA 509 (540)
Q Consensus 439 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~ 509 (540)
-..+.+||..+..=. ... ...........+.+ ++.+++.|+.+ ..+.+||+.+.....+..+..
T Consensus 170 ~~~~~~~~~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 242 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWK--DLA---PMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ 242 (318)
T ss_dssp SSCBCCCEEEEETTTTEEE--EEC---CCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS
T ss_pred CCCccceEEEEcCCCCEEE--ECC---CCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC
Confidence 245899999865411 111 11111112223333 67777777654 347788888643333333322
Q ss_pred cccceeEEEEcCCCCEEEEEEcC
Q 009203 510 HQKRVFKAVWHYSHPLLISISSD 532 (540)
Q Consensus 510 h~~~i~~l~~s~~~~~l~s~~~d 532 (540)
.......+.+ ++++++.||.+
T Consensus 243 ~r~~~~~~~~--~~~i~v~GG~~ 263 (318)
T 2woz_A 243 ERSSISLVSL--AGSLYAIGGFA 263 (318)
T ss_dssp CCBSCEEEEE--TTEEEEECCBC
T ss_pred cccceEEEEE--CCEEEEECCee
Confidence 2111122222 56777777754
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.098 Score=48.60 Aligned_cols=118 Identities=6% Similarity=-0.047 Sum_probs=65.1
Q ss_pred eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE--eCCCCCEEEEE-ecCCcEEEEecCCCCCccc
Q 009203 288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF--LPWENPCFATG-GSDHAVVLWSERDAEDSWK 364 (540)
Q Consensus 288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~ 364 (540)
.++.+ +.||.|.-+|..+|+. .=.+... ...++....- .+.++..++.. +.||.|..++..+|...+.
T Consensus 12 ~V~v~----t~dG~l~Ald~~tG~~---~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 12 ILIAA----DVEGGLHAVDRRNGHI---IWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEE----ETTSCEEEEETTTTEE---EEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred EEEEE----eCCCeEEEEECCCCcE---EEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence 56666 7899999999888732 2222210 0011211110 01122333333 5799999999888754322
Q ss_pred cceeecccCCcceeE---EEe-----ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC
Q 009203 365 PKALHRNLHSSAVMG---VAG-----MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE 415 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~---l~~-----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 415 (540)
...- ......++.. ... +..+..+++|+.+|.+...|+++|+.+..+...
T Consensus 83 ~~~~-~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 83 LSIR-QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEHH-HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eccc-cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2111 0111122221 000 014678899999999999999999998876654
No 339
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.12 E-value=1.5 Score=40.31 Aligned_cols=179 Identities=10% Similarity=-0.025 Sum_probs=87.0
Q ss_pred EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC----C-------CeEEEEECCCCCee
Q 009203 341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA----D-------KRIIGFDAGVGRAD 409 (540)
Q Consensus 341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----d-------g~i~iwd~~~~~~~ 409 (540)
+++.|+ ..+.+||..+.+- .. .............+...++.+++.|+. + ..+.+||..+++-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W--~~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANEC--YC--ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEE--EE--EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCeE--ec--CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 345555 5688999988762 21 111111111222222346788888873 1 12788898876542
Q ss_pred eeeccCcc---EEEEeecCCCCCceEEEEEcCC--------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC
Q 009203 410 FKHQIESK---CMSVLPNPCDFNLFMVQTGTPG--------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD 478 (540)
Q Consensus 410 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 478 (540)
........ ...+.. .+ .+++.|+.+ ..+.+||..+..= .... .+.........+.+ +
T Consensus 81 ~~~~~p~~r~~~~~~~~--~~---~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--~~~~---~~p~~r~~~~~~~~--~ 148 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGEA--LN---SIYVVGGREIKDGERCLDSVMCYDRLSFKW--GESD---PLPYVVYGHTVLSH--M 148 (315)
T ss_dssp ECCCBSSCEESCEEEEE--TT---EEEEECCEESSTTCCBCCCEEEEETTTTEE--EECC---CCSSCCBSCEEEEE--T
T ss_pred ECCCCCcchhceeEEEE--CC---EEEEEeCCcCCCCCcccceEEEECCCCCcE--eECC---CCCCcccceeEEEE--C
Confidence 22111111 111222 12 456666532 4588999886541 1110 11111122222333 6
Q ss_pred CCEEEEEeC-C-----CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC-----cEEEEe
Q 009203 479 GLYITSGSA-D-----PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL-----NIGLHK 539 (540)
Q Consensus 479 g~~l~sg~~-d-----g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg-----~v~iw~ 539 (540)
+++++.|+. + ..+.+||..+.....+..+......-..+.+ ++++++.||.++ .+.+||
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEE
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEE
Confidence 777777776 2 4688999886322333322211111122222 667788887665 355555
No 340
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.77 E-value=3.3 Score=40.36 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=63.3
Q ss_pred CceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCC----CCCCCceeEEEecC---CCeEEEEeec
Q 009203 224 RKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP----KHRRWPEDIAWHPQ---GNSLFSAHTA 295 (540)
Q Consensus 224 ~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~----~h~~~V~~~~~~~~---~~~l~s~~~~ 295 (540)
..-+.|+|.|| +. .|+.+...|.|++++.........+......... +.......|+|+|+ ..+|++.++.
T Consensus 14 ~~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 45689999997 54 3444567899999975432111111111111111 22466889999996 3345544332
Q ss_pred CCC-------C--CeEEEEecCCCC--------CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC
Q 009203 296 DSG-------D--SQISVLNLNKTK--------GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD 348 (540)
Q Consensus 296 ~~~-------d--~~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 348 (540)
... + ..|.-|.+..+. ....+........|. ...|+|.| ++.++++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgp-DG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGP-DGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECT-TSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECC-CCcEEEEeCCC
Confidence 111 1 245556664321 111222221222343 57899999 88887776643
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.74 E-value=4.7 Score=44.72 Aligned_cols=197 Identities=11% Similarity=0.075 Sum_probs=112.1
Q ss_pred EEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC
Q 009203 229 LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN 308 (540)
Q Consensus 229 l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~ 308 (540)
.-.+| ..+.+|.-. ..++.|+|+++...+.... ....|.-=.|-.+. .|+.. .+..|..|++.
T Consensus 71 AIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~---------~~e~VvfWkWis~~-~l~lV-----T~~aVyHW~~~ 133 (1630)
T 1xi4_A 71 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHT---------MTDDVTFWKWISLN-TVALV-----TDNAVYHWSME 133 (1630)
T ss_pred hccCC-CcceEEEec-CCeEEEeehHHhhhhcccc---------cCCCceEEEecCCC-eeEEE-----cCCeEEEeccC
Confidence 44678 467777665 6789999998876555442 12346556665443 44443 47789999997
Q ss_pred CCCCceeEEeecCCCC-cccceeEEEEeCCCCCEEEEEe-------cCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203 309 KTKGRACVTFLDDKPH-VKGIINSIIFLPWENPCFATGG-------SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 380 (540)
.. ..+...+..++. ....|..-..++ +.++++..| -.|.+.+|..+.+.. +.+ .||.+....+
T Consensus 134 ~~--s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s----Q~i--egha~~F~~~ 204 (1630)
T 1xi4_A 134 GE--SQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPI--EGHAASFAQF 204 (1630)
T ss_pred CC--CccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccccc----hhh--hHhHhhhhee
Confidence 43 233444443211 134577777788 777776543 357899999987652 333 3455444333
Q ss_pred Eec--cC-CCEEEEEeC---CCeEEEEECCCC---Ceeee-------ec---cCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203 381 AGM--QQ-KQIVLSAGA---DKRIIGFDAGVG---RADFK-------HQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQ 441 (540)
Q Consensus 381 ~~s--~~-~~~l~~~~~---dg~i~iwd~~~~---~~~~~-------~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 441 (540)
... +. ...+..+.. .+.++|.++... ...+. +. ......++..++.. -++..-+.-|.
T Consensus 205 ~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~---g~iy~itk~G~ 281 (1630)
T 1xi4_A 205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH---DVVFLITKYGY 281 (1630)
T ss_pred ccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc---CEEEEEecCce
Confidence 331 11 122222222 368888888543 11110 00 01223344444433 35566677899
Q ss_pred EEEEECCCCccee
Q 009203 442 LRLYDIRLRQTEI 454 (540)
Q Consensus 442 v~i~d~~~~~~~~ 454 (540)
|.+||+.++.+..
T Consensus 282 ~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 282 IHLYDLETGTCIY 294 (1630)
T ss_pred EEEEecccchhhh
Confidence 9999999987644
No 342
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.65 E-value=3.8 Score=40.44 Aligned_cols=110 Identities=11% Similarity=0.034 Sum_probs=62.8
Q ss_pred cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee--eecc----ccccCccccCeEEEEEcCCCCEEEEEeCCCc
Q 009203 417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH--AFGW----KQESSESQSALINQSWSPDGLYITSGSADPV 490 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--~~~~----~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~ 490 (540)
....+..+|++. .++++|--+.++.++|+......+. .+.. .... .-.-.....+|+++|....+---|..
T Consensus 324 sPHGv~vsPDGk--yi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 324 NPHGCNTSSDGK--YFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SCCCEEECTTSC--EEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCcceeeCCCCC--EEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeecce
Confidence 334455566663 3556677789999999984221000 0000 0011 12345778899999966667778999
Q ss_pred EEEEeccCC------C--CcccccccccccceeEEE------EcCCCCEEEEEE
Q 009203 491 IHLFDIRYS------A--NKPSQSIRAHQKRVFKAV------WHYSHPLLISIS 530 (540)
Q Consensus 491 i~iwd~~~~------~--~~~~~~~~~h~~~i~~l~------~s~~~~~l~s~~ 530 (540)
|.-|++... + ...+..+..|-.+ -.+. -.+||++|++..
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 999999852 0 1233333333321 1222 257888888874
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.62 E-value=3.9 Score=42.40 Aligned_cols=204 Identities=7% Similarity=0.020 Sum_probs=98.1
Q ss_pred cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE-eec--CCCCcccceeEEEEeCCCCCEEEEEecC------CcEEEE
Q 009203 284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT-FLD--DKPHVKGIINSIIFLPWENPCFATGGSD------HAVVLW 354 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iw 354 (540)
.++.+++.|...+..-..+.+||..+..- ..+. .+. ..+.....-..+.+.. ++.+++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W-~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKI-DMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCE-EEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeE-EEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEE
Confidence 45666666611001234688899887532 1122 100 0111112223333432 45677777654 357889
Q ss_pred ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC--eEEEEECCCCCeeeeec------cCccEEEEeecCC
Q 009203 355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK--RIIGFDAGVGRADFKHQ------IESKCMSVLPNPC 426 (540)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~ 426 (540)
|..+... ..+........-.+++...++.+++.|+.++ .+.+||+.++.-..... ......++.++..
T Consensus 474 d~~t~~W----~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 474 DMKTREW----SMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp ETTTTEE----EECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred eCCCCcE----EECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 9887542 1111101111112233323788888887655 69999998765422211 1111122333332
Q ss_pred -CCCceEEEEEcC--C-----CeEEEEECCCCcc--e--eeeeccccccCccccCeEEEEEcCCCCEEEEEeC-------
Q 009203 427 -DFNLFMVQTGTP--G-----RQLRLYDIRLRQT--E--IHAFGWKQESSESQSALINQSWSPDGLYITSGSA------- 487 (540)
Q Consensus 427 -~~~~~~l~~~~~--d-----g~v~i~d~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~------- 487 (540)
+ .+++.|+. + +.+.+||+.+..- . ...... ...........+.+ .++.+++.|+.
T Consensus 550 ~~---~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 550 SK---QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp TT---EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCC
T ss_pred CC---EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEEe-CCCEEEEECCccCCCCCC
Confidence 2 46666654 2 4689999987651 0 111100 00001111222333 23778888874
Q ss_pred -CCcEEEEeccCC
Q 009203 488 -DPVIHLFDIRYS 499 (540)
Q Consensus 488 -dg~i~iwd~~~~ 499 (540)
...|.+||+.+.
T Consensus 624 ~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 624 RTNSIISLDPLSE 636 (695)
T ss_dssp TTTSEEEEETTTT
T ss_pred CCCeEEEEECCCC
Confidence 346899999863
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.54 E-value=3.8 Score=39.97 Aligned_cols=115 Identities=10% Similarity=0.031 Sum_probs=59.3
Q ss_pred ceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC------CcccceeEEEEeCC---CCCEEEEEe
Q 009203 277 PEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP------HVKGIINSIIFLPW---ENPCFATGG 346 (540)
Q Consensus 277 V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~---~~~~l~s~~ 346 (540)
.+.|+|.|+|. .|+++ ...|.|++++.........+..+.... ........|+|+|. ++.+.++-+
T Consensus 16 P~~~a~~pdG~~rl~V~----er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFIL----EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp EEEEECCSSSSCCEEEE----ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred ceEEEECCCCCeEEEEE----eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 46899999996 34444 678999999754321111122221100 01345789999992 244444433
Q ss_pred cC------------CcEEEEecCCCC--C--ccccceeec---ccCCcceeEEEeccCCCEEEEEeCC
Q 009203 347 SD------------HAVVLWSERDAE--D--SWKPKALHR---NLHSSAVMGVAGMQQKQIVLSAGAD 395 (540)
Q Consensus 347 ~d------------g~i~iwd~~~~~--~--~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~~~d 395 (540)
.+ ..|.-|.+..+. . ......+.. ....-....|+|.|||.+.++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 21 134445554321 0 001111111 1112235789999999887776653
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.20 E-value=1.7 Score=45.19 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=79.1
Q ss_pred CCCEEEEEecC----CcEEEEecCCCCCccccceee-c-----ccCCcceeEEEecc-CCCEEEEEeCCC------eEEE
Q 009203 338 ENPCFATGGSD----HAVVLWSERDAEDSWKPKALH-R-----NLHSSAVMGVAGMQ-QKQIVLSAGADK------RIIG 400 (540)
Q Consensus 338 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~-~-----~~~~~~v~~l~~s~-~~~~l~~~~~dg------~i~i 400 (540)
++.+++.|+.+ ..+.+||..+... ..+. . ......-.+++..+ ++.+++.|+.++ .+.+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W----~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKI----DMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCE----EEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeE----EEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence 67788888754 4588899887652 2221 0 00111122333333 677777777533 5788
Q ss_pred EECCCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 401 FDAGVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 401 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
||+.+.+-...... .....+.+....+ .+++.|+.++ .+.+||..+..= .................++.+.
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~---~iyv~GG~~~~~~v~~yd~~t~~W--~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDG---NVLILGGVTEGPAMLLYNVTEEIF--KDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTS---CEEEECCBCSSCSEEEEETTTTEE--EECCCSSGGGGSCCBSCEEEEE
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCC---EEEEECCCCCCCCEEEEECCCCce--EEccCCCCCCCcccceeEEEEe
Confidence 99887543322111 1111122221122 4666666544 689999987541 1111000011112222345555
Q ss_pred CC-CCEEEEEeC--C-----CcEEEEeccCC
Q 009203 477 PD-GLYITSGSA--D-----PVIHLFDIRYS 499 (540)
Q Consensus 477 p~-g~~l~sg~~--d-----g~i~iwd~~~~ 499 (540)
.+ +.+++.|+. + ..+.+||+.+.
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 55 677777775 2 35889999874
No 346
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=93.95 E-value=0.096 Score=30.43 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 30 EALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 30 ~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
|.|++.|++-.+||+..+++|+.+|.++.++++
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888889999999988888888888887765
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.71 E-value=4.5 Score=37.73 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=23.9
Q ss_pred eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC------cEEEEeccC
Q 009203 441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP------VIHLFDIRY 498 (540)
Q Consensus 441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg------~i~iwd~~~ 498 (540)
.+.+||+.+..=.. ++ .+......-.++.+ ++++++.|+.++ .|.+++++.
T Consensus 286 ~~~~yd~~~~~W~~--~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~v~~l~~~~ 342 (357)
T 2uvk_A 286 STDIHLWHNGKWDK--SG---ELSQGRAYGVSLPW--NNSLLIIGGETAGGKAVTDSVLITVKD 342 (357)
T ss_dssp CCEEEECC---CEE--EE---ECSSCCBSSEEEEE--TTEEEEEEEECGGGCEEEEEEEEEC-C
T ss_pred eEEEEecCCCceee--CC---CCCCCcccceeEEe--CCEEEEEeeeCCCCCEeeeEEEEEEcC
Confidence 57789987654111 11 11111112223333 678888888553 355567775
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.60 E-value=6.2 Score=38.99 Aligned_cols=71 Identities=11% Similarity=0.064 Sum_probs=50.0
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCC----Ccc-------cccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203 469 ALINQSWSPDGLYITSGS-ADPVIHLFDIRYSA----NKP-------SQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG 536 (540)
Q Consensus 469 ~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~----~~~-------~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~ 536 (540)
....+.++|||+++++++ -+.++.++|+..-. .+. +.... -.-.....+|.++|....|.--|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence 456789999999988765 57899999998410 111 11222 123567899999996666667999999
Q ss_pred EEeC
Q 009203 537 LHKI 540 (540)
Q Consensus 537 iw~l 540 (540)
-|+|
T Consensus 403 kWni 406 (638)
T 3sbq_A 403 KWNM 406 (638)
T ss_dssp EEEH
T ss_pred EEec
Confidence 9985
No 349
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=93.55 E-value=0.39 Score=32.18 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhccC
Q 009203 29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQ 77 (540)
Q Consensus 29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 77 (540)
...|..+++++..|+.+....|..++++|.+.+..+.+++.+|-++++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6677888888888888888888888999999999999999998887653
No 350
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.36 E-value=4.7 Score=36.88 Aligned_cols=144 Identities=14% Similarity=0.147 Sum_probs=71.1
Q ss_pred CCCEEEEEecC-------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC------CCeEEEEECC
Q 009203 338 ENPCFATGGSD-------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA------DKRIIGFDAG 404 (540)
Q Consensus 338 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~------dg~i~iwd~~ 404 (540)
++.+++.|+.+ ..+.+||+.+.+- ..+........-.+++. .++.+++.|+. -..+.+||+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 56777888764 2478888887652 11111000011112222 35677777764 2358999998
Q ss_pred CCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203 405 VGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS 476 (540)
Q Consensus 405 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 476 (540)
+.+-....... .....+... + .+++.|+.+ ..+.+||+.+..=. .+. .+.........+.+
T Consensus 184 ~~~W~~~~~~p~~r~~~~~~~~~--~---~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~- 252 (318)
T 2woz_A 184 KGDWKDLAPMKTPRSMFGVAIHK--G---KIVIAGGVTEDGLSASVEAFDLKTNKWE--VMT---EFPQERSSISLVSL- 252 (318)
T ss_dssp TTEEEEECCCSSCCBSCEEEEET--T---EEEEEEEEETTEEEEEEEEEETTTCCEE--ECC---CCSSCCBSCEEEEE-
T ss_pred CCEEEECCCCCCCcccceEEEEC--C---EEEEEcCcCCCCccceEEEEECCCCeEE--ECC---CCCCcccceEEEEE-
Confidence 76533221111 111122222 2 455555432 35778998765411 111 11111122223333
Q ss_pred CCCCEEEEEeCC--------------CcEEEEeccC
Q 009203 477 PDGLYITSGSAD--------------PVIHLFDIRY 498 (540)
Q Consensus 477 p~g~~l~sg~~d--------------g~i~iwd~~~ 498 (540)
++.+++.|+.+ ..+.+||+.+
T Consensus 253 -~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 253 -AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp -TTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred -CCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 57777777654 3577888876
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.53 E-value=6 Score=35.97 Aligned_cols=181 Identities=7% Similarity=0.047 Sum_probs=96.7
Q ss_pred eEEEecCCCeEEEEeecCC----------CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe--
Q 009203 279 DIAWHPQGNSLFSAHTADS----------GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-- 346 (540)
Q Consensus 279 ~~~~~~~~~~l~s~~~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-- 346 (540)
+--++++|++|+.+....+ ....|+..+++.... ..... . .+..|++ +++.|+-..
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~---~~l~~------~--~~~~~s~-~g~~Iy~~~~~ 124 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS---TVLDP------D--PCIYASL-IGNYIYYLHYD 124 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC---EEEEC------S--CEEEEEE-ETTEEEEEEES
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc---eEeec------C--CccEEEE-eCCEEEEEeec
Confidence 3456889998887732110 134677777775421 22211 1 1236777 777777665
Q ss_pred --cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCeeeeeccCccEEEEee
Q 009203 347 --SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFKHQIESKCMSVLP 423 (540)
Q Consensus 347 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 423 (540)
.+..|+..++.... ...+.. +. + ..|+++++.|+..+. ...|.+.++..+........ ... ..+
T Consensus 125 ~~~~~~Iy~~~~dGs~----~~~lt~--~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~ 191 (302)
T 3s25_A 125 TQTATSLYRIRIDGEE----KKKIKN--HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--NCY-KPV 191 (302)
T ss_dssp SSSCEEEEEEETTSCC----CEEEES--SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--CEE-EEE
T ss_pred CCCCceEEEEECCCCC----eEEEeC--CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--Ccc-cee
Confidence 23456666666544 233322 21 2 456778888887665 67888889876654333321 111 223
Q ss_pred cCCCCCceEEEEEcCC-CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEEeccC
Q 009203 424 NPCDFNLFMVQTGTPG-RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS--ADPVIHLFDIRY 498 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~~ 498 (540)
.|.+. .+..+...+ ..|..-++........ . ...+ ..|+|++.+|.-+. ..+.|..-+++.
T Consensus 192 ~P~g~--~iy~t~~~~~~~I~~~~ldG~~~~~L--------t--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 192 VLDDT--NVYYMDVNRDNAIVHVNINNPNPVVL--------T--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEETT--EEEEEEGGGTTEEEEECSSSCCCEEC--------S--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred eecCC--EEEEEEcCCCcEEEEEECCCCCeEEE--------e--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 46552 223333222 4666666665543221 1 1122 34788898887653 235566666663
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.44 E-value=7.5 Score=36.85 Aligned_cols=185 Identities=15% Similarity=0.072 Sum_probs=85.1
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc-cC--------CcceeEEEeccC-CCEEEEEeCCC
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN-LH--------SSAVMGVAGMQQ-KQIVLSAGADK 396 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~--------~~~v~~l~~s~~-~~~l~~~~~dg 396 (540)
..+.+|.+.|.+...|+.+..++.|... ..+...|........ .+ ...+.++.+.|+ ...|+.++..+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFES--TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEE--SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEE--CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 3578999988445556656555544433 222222221110000 00 134888999885 45666666544
Q ss_pred eEEEEECCCCCeeeeec--cC----ccEEEEeecCCCCCceEEEEEc---------CCCeEEEEECCCCcceeeeecccc
Q 009203 397 RIIGFDAGVGRADFKHQ--IE----SKCMSVLPNPCDFNLFMVQTGT---------PGRQLRLYDIRLRQTEIHAFGWKQ 461 (540)
Q Consensus 397 ~i~iwd~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~l~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~ 461 (540)
|...+-. ++.-.... .. ..+..+..+|.+....++++.. .++...+|...++......+. .
T Consensus 255 -l~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~ 330 (394)
T 3b7f_A 255 -IYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--R 330 (394)
T ss_dssp -EEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--B
T ss_pred -EEEeCCC-CCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--C
Confidence 4444322 32221111 11 2345677776544323333211 133345666555332222211 0
Q ss_pred ccCccc----cCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203 462 ESSESQ----SALINQSWSPD-GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520 (540)
Q Consensus 462 ~~~~~~----~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s 520 (540)
.+.... .....++++|. ...|+.++.++.|..-+-. +.....+..+...+.+|+|.
T Consensus 331 glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~D~---G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 331 GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASADE---GEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEESST---TSBCEEEECSCSCEEEEEEE
T ss_pred CCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEECCC---CCCceEcccCCCCeeEEEEe
Confidence 111100 01235788874 3456667666665433221 44444444444457777764
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.35 E-value=0.4 Score=44.52 Aligned_cols=118 Identities=9% Similarity=0.067 Sum_probs=69.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCcceeeeeccccc
Q 009203 386 KQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEIHAFGWKQE 462 (540)
Q Consensus 386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~ 462 (540)
+..+++++.||.|.-+|..+|+........ ..............+..++.. +.||.|..+|..++.... .+.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccc
Confidence 357889999999999999999998876654 233322111110111234443 689999999988764322 1111110
Q ss_pred cCccccCeEE---EEE-c----CCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203 463 SSESQSALIN---QSW-S----PDGLYITSGSADPVIHLFDIRYSANKPSQSIR 508 (540)
Q Consensus 463 ~~~~~~~v~~---~~~-s----p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 508 (540)
. ...++.. ..+ . ..+..+++|+.+|.+...|+.+ ++.+..+.
T Consensus 89 v--~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t--G~~~W~~~ 138 (339)
T 2be1_A 89 V--STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN--GEIISAFG 138 (339)
T ss_dssp H--TTCSEEEECC----------CCEEEEECEEEEEEEEEETTT--CCEEEEES
T ss_pred e--eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC--CcEEEEEe
Confidence 0 1112221 001 0 1456788999999999999998 66655554
No 354
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.70 E-value=0.63 Score=32.22 Aligned_cols=53 Identities=8% Similarity=0.129 Sum_probs=42.1
Q ss_pred CChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 23 NSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 23 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
.+.+...+.|.-.+.+.++.++.|...+..-+.++..+++++..+..++....
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34557888899999999999999999999999999999888888777766554
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.27 E-value=17 Score=34.25 Aligned_cols=72 Identities=10% Similarity=0.024 Sum_probs=37.2
Q ss_pred ceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeec---------------ccCCcceeEEEeccC-CCEEE
Q 009203 328 IINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHR---------------NLHSSAVMGVAGMQQ-KQIVL 390 (540)
Q Consensus 328 ~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~~v~~l~~s~~-~~~l~ 390 (540)
.|.++++.|.+ ...+..++..+.|... ..+...|....... ......+.+|.+.|. ...|+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 47889998744 5666666666655444 33222222211000 012245788999873 44555
Q ss_pred EEeCCCeEEEE
Q 009203 391 SAGADKRIIGF 401 (540)
Q Consensus 391 ~~~~dg~i~iw 401 (540)
.+..++.|...
T Consensus 194 vg~~~ggl~~s 204 (394)
T 3b7f_A 194 IGMSSGGVFES 204 (394)
T ss_dssp EEEETBEEEEE
T ss_pred EEECCCCEEEE
Confidence 55544444433
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=87.47 E-value=17 Score=33.33 Aligned_cols=287 Identities=11% Similarity=0.022 Sum_probs=135.0
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE---ecCCCCC
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL---NLNKTKG 312 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw---d~~~~~~ 312 (540)
...+++-+.+|.|+--.+.+-.....--...........+.+..+........|+.- +..|.++-. ++.....
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~f----T~~Gr~y~~~~~~lp~~~r 78 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFF----TTQGRVYRAKAYDLPEASR 78 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEE----ETTSEEEEEEGGGSCBCCS
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEE----eCCCeEEEEEHHHCcCCCc
Confidence 456778888888886553321100000000000001122344445444445555544 567766544 4443210
Q ss_pred ---ceeE-EeecCCCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCccc--cceeecccCCcceeEEEecc
Q 009203 313 ---RACV-TFLDDKPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSWK--PKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 313 ---~~~~-~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~l~~s~ 384 (540)
...+ ..+.. . ....|.++...+. +...++..+.+|.|+-..+..-....+ ...+... ..+.+..+....
T Consensus 79 ~~~G~~i~~~l~l-~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~ 155 (327)
T 3uc1_A 79 TARGQHVANLLAF-Q-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCS 155 (327)
T ss_dssp SSCCEEHHHHTTC-C-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEEC
T ss_pred cCCCEEHHHccCC-C-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEec
Confidence 0111 11221 1 1344655544331 467899999999999887654321110 1111111 235555555555
Q ss_pred CCCEEEEEeCCCeEEEEECC--CCC---------eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203 385 QKQIVLSAGADKRIIGFDAG--VGR---------ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE 453 (540)
Q Consensus 385 ~~~~l~~~~~dg~i~iwd~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 453 (540)
....|+..+..|.+..+... .-. .......+..+.++...+.+ ..++..+..|.++.-.+......
T Consensus 156 ~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~---~~ll~~T~~G~~Krt~l~e~~~~ 232 (327)
T 3uc1_A 156 AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREG---TYLLVATSGGYAKRTAIEEYPVQ 232 (327)
T ss_dssp TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTT---CEEEEEETTSEEEEEEGGGSCBC
T ss_pred CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCC---CEEEEEeCCCcEEEEEHHHcccc
Confidence 56778888999999888876 211 11123334556666555433 47888889999998886543211
Q ss_pred ee-eeccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC-------CCcccccccccccceeEEEEcCC-C
Q 009203 454 IH-AFGWK-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS-------ANKPSQSIRAHQKRVFKAVWHYS-H 523 (540)
Q Consensus 454 ~~-~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~~~h~~~i~~l~~s~~-~ 523 (540)
.. ..+.. ..+..-...+..+....+...++..+.+|.+.-++...- .+.....+. ....|.++...+. .
T Consensus 233 ~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~-~~d~vv~~~~~~~~~ 311 (327)
T 3uc1_A 233 GRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLG-EGDTLLAIARNAEES 311 (327)
T ss_dssp CTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCC-TTCCEEEEEECC---
T ss_pred CcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecC-CCCEEEEEEEcCCCc
Confidence 00 00000 011111233444444344556677778888888877641 011111222 2345666665443 3
Q ss_pred CEEEEEEcCC
Q 009203 524 PLLISISSDL 533 (540)
Q Consensus 524 ~~l~s~~~dg 533 (540)
..+.+.+.+|
T Consensus 312 ~~~~~~~~~g 321 (327)
T 3uc1_A 312 GDDNAVDANG 321 (327)
T ss_dssp ----------
T ss_pred ceEEEEecCC
Confidence 4455555555
No 357
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=87.21 E-value=2.7 Score=23.82 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 49 RISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
+++.++.+|+.+++++..+.+.+..+
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666677777766666666554
No 358
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=86.55 E-value=1.1 Score=28.21 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=21.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 009203 40 TKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLA 72 (540)
Q Consensus 40 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 72 (540)
..+++.|+.+.+.++.+..++.++..++..+|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666666666666666554
No 359
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=85.81 E-value=1.5 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=16.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203 44 QHLRQRISYYKSQLEEAEKRLEDSQ 68 (540)
Q Consensus 44 ~~l~~~~~~~~~~l~~~~~~~~~~~ 68 (540)
+.|.++.+.++.+|+.++++++.++
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777766654
No 360
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.52 E-value=2.4 Score=33.17 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 009203 27 EQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLA 72 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 72 (540)
...+.|.+.++.+.+|+..|+.++...+-+++++.+++.+++.++.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666777767766666666666555555555444433
No 361
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=84.44 E-value=22 Score=31.76 Aligned_cols=217 Identities=10% Similarity=0.001 Sum_probs=115.2
Q ss_pred CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203 276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355 (540)
Q Consensus 276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 355 (540)
.|..++.. ..+.+.. . ||.|..|-.+...... +.. .....|..++... ...++. . ||.|+.|-
T Consensus 25 ~i~~ia~G--~~h~~~l----~-~G~v~~wG~n~~Gqlg-~p~-----~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG 87 (282)
T 3qhy_B 25 GVDAIAGG--YFHGLAL----K-GGKVLGWGANLNGQLT-MPA-----ATQSGVDAIAAGN--YHSLAL-K-DGEVIAWG 87 (282)
T ss_dssp SCCEEEEC--SSEEEEE----E-TTEEEEEECCSSSTTS-CCG-----GGGSCCCEEEECS--SEEEEE-E-TTEEEEEE
T ss_pred CCcEEEeC--CCeEEEE----E-CCEEEEEeCCCCCCCC-CCc-----cCCCCEEEEEeCC--CEEEEE-E-CCEEEEee
Confidence 45666553 2344444 5 8999999765431110 100 1123577777653 233333 4 89999998
Q ss_pred cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203 356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQ 434 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 434 (540)
......+..+.. -...|..++... .+.+.-. ||.|+.|-... ++.-........+..++..... .++
T Consensus 88 ~n~~Gqlg~P~~-----~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~----~~~ 155 (282)
T 3qhy_B 88 GNEDGQTTVPAE-----ARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT----ALA 155 (282)
T ss_dssp CCTTSTTCCCGG-----GSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE----EEE
T ss_pred CCCCCCCCCCcc-----cCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE----EEE
Confidence 765432221111 124677787764 3344445 99999997654 3321222233455666554432 333
Q ss_pred EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccce
Q 009203 435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRV 514 (540)
Q Consensus 435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i 514 (540)
. . ||.|+.|-......... . ......|..++...+.. ++. .||.|+.|-.... +.+-.... ....|
T Consensus 156 l-~-~G~v~~wG~n~~gqlg~----p---~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~-gqlg~p~~-~~~~v 221 (282)
T 3qhy_B 156 V-K-NGGVIAWGDNYFGQTTV----P---AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRY-KQTTVPTE-ALSGV 221 (282)
T ss_dssp E-E-TTEEEEEECCTTSTTSC----C---GGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTT-STTCCCGG-GGSSC
T ss_pred E-E-CCEEEEecCCCCCCCCC----c---eecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCC-CCCCCCcc-cCCCc
Confidence 3 3 79999998775443221 1 01134677777654332 333 5999999987652 22111111 12346
Q ss_pred eEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 515 FKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 515 ~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
..++-...- .++. . ||.|+.|
T Consensus 222 ~~i~~G~~h-~~al-~-~g~v~~w 242 (282)
T 3qhy_B 222 SAIASGEWY-SLAL-K-NGKVIAW 242 (282)
T ss_dssp CEEEECSSC-EEEE-E-TTEEEEE
T ss_pred eEEEcCCCE-EEEE-E-CCEEEEe
Confidence 777654432 2333 3 8888888
No 362
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.64 E-value=2.1 Score=27.02 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=18.6
Q ss_pred HhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 009203 36 IEHRTKEVQHLRQRISYYKSQLEEAEKRLE 65 (540)
Q Consensus 36 i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 65 (540)
++....|++.|+.++..++.+++++.++++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666666666666777766654
No 363
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.34 E-value=3.9 Score=27.52 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 73 (540)
..-..+.|++.+++...|.+.|+.++..++.....++.++.+++..+.+
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677888888888899999998888888888888887777766543
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.97 E-value=33 Score=31.22 Aligned_cols=198 Identities=6% Similarity=-0.031 Sum_probs=108.9
Q ss_pred CCCEEEEEecCCcEEEEecCCCCCccc----cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC--------
Q 009203 338 ENPCFATGGSDHAVVLWSERDAEDSWK----PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-------- 405 (540)
Q Consensus 338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-------- 405 (540)
+...+++.+.+|.|+-..+..-..... ...+.. ...+.+..+........++..+..|.++-+....
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~l-ke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL-NDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceeccc-CCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 556788899999998876654321000 111111 1234455555555567788888889877776532
Q ss_pred -CCe---eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc-cccCccccCeEEEEEcCCCC
Q 009203 406 -GRA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK-QESSESQSALINQSWSPDGL 480 (540)
Q Consensus 406 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~ 480 (540)
|.. ......+..+.++...+......+++..+..|.++...+....... ..+.. ..+.. ...+..+.....+.
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-SRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-CCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 111 1123334455555443211011467788899999998875432110 00100 12233 34555555544556
Q ss_pred EEEEEeCCCcEEEEeccCC-------CCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203 481 YITSGSADPVIHLFDIRYS-------ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539 (540)
Q Consensus 481 ~l~sg~~dg~i~iwd~~~~-------~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~ 539 (540)
.++..+.+|.+..+....- .+.....+.. ...|.++..-.++..|++.+.+|..+..+
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 7888889999999988641 1112222332 34566666555566788888888877654
No 365
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=79.98 E-value=7.8 Score=23.44 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDS 67 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 67 (540)
.++.|.+.++-...|...||+++..--.+|..++..--+.
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 4678888888888888888888766666666665543333
No 366
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=79.94 E-value=3.5 Score=28.47 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=17.0
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHH
Q 009203 31 ALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQS 69 (540)
Q Consensus 31 ~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 69 (540)
.....|+...+.+-+-+++|..++.++..+..++.+.+.
T Consensus 25 fqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 25 FQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444455555555555555555443
No 367
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.49 E-value=3.3 Score=28.91 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=25.8
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 34 ALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 34 ~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
....+.+.++..|+.++..++.++..++.++..++..|...
T Consensus 34 ~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 34 ERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666544
No 368
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=79.46 E-value=3.8 Score=21.24 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=6.0
Q ss_pred hhHHHHHHhhHHHHH
Q 009203 40 TKEVQHLRQRISYYK 54 (540)
Q Consensus 40 ~~~~~~l~~~~~~~~ 54 (540)
++|+..|+++++.++
T Consensus 8 kqeiaalkkeiaalk 22 (33)
T 4dzn_A 8 KQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 369
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.37 E-value=9.6 Score=26.28 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 27 EQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
+.++.|.+.|+...+.|..|+.++..++.+...+..
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555555555555544444333
No 370
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=78.65 E-value=1.4 Score=35.03 Aligned_cols=63 Identities=29% Similarity=0.328 Sum_probs=46.9
Q ss_pred hhhhhhcCCCCChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 13 EEEEEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
+...+-+.++....++...|.+-++.|.+-+..|+.-...++..+.+.+..+++.+..+.++.
T Consensus 72 ~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 72 RLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666667777777778888887788888788888889999998888888777764
No 371
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=77.98 E-value=3.4 Score=33.61 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=21.2
Q ss_pred ccccCCCcchhhhhhcCCCCChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q 009203 4 LIVKKPKQEEEEEEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEE 59 (540)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~ 59 (540)
|..-|...++..+.++-..+........|...++.+.+|++.|+.+++.++.+...
T Consensus 4 ~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 4 LTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34445555555554333333333334444445666666666666666655555543
No 372
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.68 E-value=12 Score=40.27 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=48.4
Q ss_pred CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCCeE
Q 009203 224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQI 302 (540)
Q Consensus 224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i 302 (540)
..|.+++..++ ..++++-+.|+++|||++.+++++.+........... ........+. +.++.+.+ ....+|..
T Consensus 236 ~~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~---~~~~~~~~~~~~~~i~v~~-s~~~~g~F 310 (950)
T 4gq2_M 236 NTIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQ---SFPYLTSDHTTNSFIALYY-PDNSHGSF 310 (950)
T ss_dssp TCEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSC---CCCCEEECSSSTTEEEEEE-CCSSSCEE
T ss_pred ceEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeeecccccCCccc---cccccccCCCcccEEEEEE-cCCCCcEE
Confidence 35788888885 7899999999999999999998776654322111111 1112223332 33333322 22456777
Q ss_pred EEEecC
Q 009203 303 SVLNLN 308 (540)
Q Consensus 303 ~vwd~~ 308 (540)
++|.+.
T Consensus 311 ~~~~~~ 316 (950)
T 4gq2_M 311 SIYKLN 316 (950)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777664
No 373
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.19 E-value=52 Score=30.86 Aligned_cols=152 Identities=11% Similarity=0.081 Sum_probs=84.4
Q ss_pred eEEEEEcCCC--CCcceeecccccCCCCCCCCceeEEEe---cC----CCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203 247 VIRLWQLQSR--GSGASLLSTTDCLSPKHRRWPEDIAWH---PQ----GNSLFSAHTADSGDSQISVLNLNKTKGRACVT 317 (540)
Q Consensus 247 ~v~iw~~~~~--~~~~~~~~~~~~~~~~h~~~V~~~~~~---~~----~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~ 317 (540)
.|.+||+.++ +.++++........ ....+..+++. +. +.++..+ +...+.|.|+|+.+++..+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~--~~S~l~di~VD~~~~~~~c~~~~aYIt---D~~~~gLIVydl~~~~swRv~~ 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE--KPTYFGGFAVDVANPKGDCSETFVYIT---NFLRGALFIYDHKKQDSWNVTH 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC--CGGGEEEEEEEESCTTTTSCSEEEEEE---ETTTTEEEEEETTTTEEEEEEC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc--cCCccceEEEecccCCCCCCccEEEEE---cCCCCcEEEEECCCCcEEEEcc
Confidence 5778888887 76666654333221 23457788887 22 2233333 2567889999999874422221
Q ss_pred ee-cCCC-------C----cccceeEEEEeCCC----CCEEEEEecCCcEEEEecC-----CCCCccccceeecccCCcc
Q 009203 318 FL-DDKP-------H----VKGIINSIIFLPWE----NPCFATGGSDHAVVLWSER-----DAEDSWKPKALHRNLHSSA 376 (540)
Q Consensus 318 ~~-~~~~-------~----~~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~ 376 (540)
.. .... + -...+..|+++| + ++.|.-....+ -++|.+. .......++.+...+....
T Consensus 199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp-~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~ 276 (381)
T 3q6k_A 199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGD-RDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYND 276 (381)
T ss_dssp GGGSCCSCEEEEETTEEEEECCCEEEEEECC-CCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCC
T ss_pred CCCccccCcceEECCEEeEeccCceEEEecC-CcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCC
Confidence 00 0000 0 013588999998 5 66676665543 2344432 2221111222222221233
Q ss_pred eeEEEec-cCCCEEEEEeCCCeEEEEECCC
Q 009203 377 VMGVAGM-QQKQIVLSAGADKRIIGFDAGV 405 (540)
Q Consensus 377 v~~l~~s-~~~~~l~~~~~dg~i~iwd~~~ 405 (540)
-..+++. .+|.++++--....|..|+..+
T Consensus 277 ~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 277 AIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred cceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 4456675 5777777777888999999875
No 374
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.07 E-value=27 Score=37.61 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=29.5
Q ss_pred ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcc
Q 009203 328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSW 363 (540)
Q Consensus 328 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 363 (540)
.+.+++..+ +..++++-+.|+++|+|++.+++++.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEe
Confidence 467777777 78899999999999999999988643
No 375
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=74.84 E-value=5.2 Score=27.71 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=9.2
Q ss_pred HhhhhhHHHHHHhhHHHHHHHHHH
Q 009203 36 IEHRTKEVQHLRQRISYYKSQLEE 59 (540)
Q Consensus 36 i~~~~~~~~~l~~~~~~~~~~l~~ 59 (540)
|++..++|+.|+.+|...+..+.+
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443333333333333
No 376
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=74.55 E-value=2.9 Score=23.21 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHhh
Q 009203 26 DEQEEALVALIEHRTKEVQHLRQR 49 (540)
Q Consensus 26 ~~~~~~~~~~i~~~~~~~~~l~~~ 49 (540)
++-+|+|+..-.+.+.|+.+|+..
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455554444555555554444
No 377
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.32 E-value=14 Score=25.68 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
..+..+.+.+-+...++....+..++..++.++..++..++.++.+|...
T Consensus 18 a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 18 ALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666677777777778888888888888887777776654
No 378
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=74.15 E-value=2.6 Score=27.10 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=17.9
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhHHHH
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRISYY 53 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 53 (540)
|+++..+.+..-++...+|+..|+.++..+
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666665554433
No 379
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=73.93 E-value=91 Score=32.66 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=38.4
Q ss_pred ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc----CCcceeEEEeccC-CCEEEEEe
Q 009203 326 KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL----HSSAVMGVAGMQQ-KQIVLSAG 393 (540)
Q Consensus 326 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~-~~~l~~~~ 393 (540)
.+.|.+|+++|.+...++.++..+.|...+ .+...|..... ... ....+.+|++.|. ...++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~-~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLND-FIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCT-TCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECcc-CCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 357999999996677888888777665443 22222322111 000 1346899999874 34455444
No 380
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=73.75 E-value=54 Score=29.93 Aligned_cols=197 Identities=8% Similarity=-0.029 Sum_probs=104.3
Q ss_pred CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC---C------CCe
Q 009203 338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG---V------GRA 408 (540)
Q Consensus 338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~---~------~~~ 408 (540)
+...+++.+.+|.|+--.+..-.... ...+.. .-.+.+..+........|+..+..|.++-+... . |.+
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~-~~~~~l-ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASN-GQDFAM-KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTT-TCCCCC-CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcC-cccccc-CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 55678888999999876554211000 001111 133445555555556777888888887666542 1 221
Q ss_pred e---eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc-cccCccccCeEEEEEcCCCCEEEE
Q 009203 409 D---FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK-QESSESQSALINQSWSPDGLYITS 484 (540)
Q Consensus 409 ~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~s 484 (540)
+ .....+..+.++..-++-....+++..+.+|.++...+.........-+.. ..+... ..+..+........|+.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEE
Confidence 1 112234455554433220111468888999999999875332111000000 012222 44555555445567888
Q ss_pred EeCCCcEEEEeccCC-------CCcccccccccccceeEEEEcCCCC-EEEEEEcCCcEEEE
Q 009203 485 GSADPVIHLFDIRYS-------ANKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLH 538 (540)
Q Consensus 485 g~~dg~i~iwd~~~~-------~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw 538 (540)
.+.+|.+..+....- .+.....+. ....|.++...+++. .|++.+..|..+..
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~ 221 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKM 221 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEE
Confidence 889999988887641 011111222 233566665444444 78888888876654
No 381
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=72.90 E-value=62 Score=30.29 Aligned_cols=120 Identities=5% Similarity=0.077 Sum_probs=66.5
Q ss_pred ccceeEEEEe---CC--C-CCEEE-EEecCCcEEEEecCCCCCccccce----------eecccC----CcceeEEEecc
Q 009203 326 KGIINSIIFL---PW--E-NPCFA-TGGSDHAVVLWSERDAEDSWKPKA----------LHRNLH----SSAVMGVAGMQ 384 (540)
Q Consensus 326 ~~~v~~~~~~---p~--~-~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~----~~~v~~l~~s~ 384 (540)
.+.+..+++. |. . +.++. +-+..+.|.++|+.+++. |+... +...+. ...+..|+.+|
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp 229 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD 229 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCccccCcceEECCEEeEeccCceEEEecC
Confidence 3457888887 21 1 23333 333467899999998763 11110 000011 24688899999
Q ss_pred C----CCEEEEEeCCC-eEEEEE---CCCCCe---eeeecc---CccEEEEeec-CCCCCceEEEEEcCCCeEEEEECCC
Q 009203 385 Q----KQIVLSAGADK-RIIGFD---AGVGRA---DFKHQI---ESKCMSVLPN-PCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 385 ~----~~~l~~~~~dg-~i~iwd---~~~~~~---~~~~~~---~~~~~~~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
+ ++.|+.....+ .++-.. +++... +..... .......+.+ ..+ .++++--..+.|..|+..+
T Consensus 230 ~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G---~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 230 RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK---VIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC---EEEEEESSSSEEEEEETTS
T ss_pred CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC---eEEEEeccCCeEEEEeCCC
Confidence 7 77787776654 343333 122111 111111 1344555665 334 5677777888999999875
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=72.23 E-value=57 Score=29.51 Aligned_cols=241 Identities=10% Similarity=-0.007 Sum_probs=117.6
Q ss_pred CCCeEEEEeecCCCCCeEEEEecCCCCCce----eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE---ecC
Q 009203 285 QGNSLFSAHTADSGDSQISVLNLNKTKGRA----CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW---SER 357 (540)
Q Consensus 285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw---d~~ 357 (540)
+...+++. +.+|.|+--.+.+-.... -...+... ..+.+..+.... +.+.|+..+..|.++-+ ++.
T Consensus 2 ~e~~~v~~----T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k--e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp 74 (307)
T 1zi0_A 2 QEDVVVTL----SHQGYVKYQPLSEYEAQRRGGKGKSAARIK--EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLP 74 (307)
T ss_dssp CCEEEEEE----ETTSEEEEEECC----------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSC
T ss_pred CCcEEEEE----eCCCEEEEeeHHHhhhhccCCCCceeeeeC--CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCc
Confidence 34566676 789998877665321100 01111110 123454444444 55667777778876554 443
Q ss_pred CCCCcc--cc--ceeecccCCcceeEEEec---cCCCEEEEEeCCCeEEEEECCC-------CCeeeeeccCccEEEEee
Q 009203 358 DAEDSW--KP--KALHRNLHSSAVMGVAGM---QQKQIVLSAGADKRIIGFDAGV-------GRADFKHQIESKCMSVLP 423 (540)
Q Consensus 358 ~~~~~~--~~--~~~~~~~~~~~v~~l~~s---~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~ 423 (540)
...... .. ..+. ......|.++... .++.+++..+.+|.++...+.. |........+..+..+..
T Consensus 75 ~~~~~a~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~ 153 (307)
T 1zi0_A 75 EATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL 153 (307)
T ss_dssp CCCSSSCCEEGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEE
T ss_pred CCCCCCCCeEhhhccC-CCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEE
Confidence 322100 00 0111 1233456655432 3466788999999999987642 111122223345555444
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceee-eeccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC-
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWK-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA- 500 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~- 500 (540)
.... ..++..+.+|.+..++...-..... ..+.. ..+. ....|.++..-.++..|++.+..|.++-.++..-.
T Consensus 154 ~~~~---~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~ 229 (307)
T 1zi0_A 154 TSGE---DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPT 229 (307)
T ss_dssp ECTT---CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCC
T ss_pred eCCC---CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhcc
Confidence 3322 2566777888888887753221100 00100 0122 23456666555556678888899998888774310
Q ss_pred ------CcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 501 ------NKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 501 ------~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
+.....+..-.+.+..+....+..-|+..+.+|.+.-
T Consensus 230 ~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir 272 (307)
T 1zi0_A 230 KSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVR 272 (307)
T ss_dssp CCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEE
T ss_pred CCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEE
Confidence 1112222222345555444333444555566665543
No 383
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.91 E-value=3.6 Score=30.17 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=2.9
Q ss_pred HHHHHHhh
Q 009203 42 EVQHLRQR 49 (540)
Q Consensus 42 ~~~~l~~~ 49 (540)
++..|+.+
T Consensus 45 Ei~sL~kk 52 (101)
T 3u1c_A 45 DIVQLEKQ 52 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 384
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.87 E-value=9 Score=25.69 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=19.8
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203 34 ALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQ 68 (540)
Q Consensus 34 ~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 68 (540)
+-|..+...|+.|..+|.+....+.+++.++...+
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555556666666666666666666555443
No 385
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=71.72 E-value=54 Score=29.09 Aligned_cols=199 Identities=9% Similarity=-0.033 Sum_probs=106.2
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEE---EecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEE
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVL---WSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFD 402 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd 402 (540)
+.+..+.... +.+.|+.-+.+|.++- |++..... ..+ ......|..+.... +..+++..+.+|.++...
T Consensus 24 D~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~----~~l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~ 96 (276)
T 3no0_A 24 APVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSK----VSL--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIP 96 (276)
T ss_dssp CCEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEE----CCC--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEE
T ss_pred CeEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcc----ccc--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEE
Confidence 4465555554 4455666677787664 44432211 112 12345566664421 467899999999999998
Q ss_pred CCCC------CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee-eeccc-cccCccccCeEEEE
Q 009203 403 AGVG------RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWK-QESSESQSALINQS 474 (540)
Q Consensus 403 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~-~~~~~~~~~v~~~~ 474 (540)
+..- ........+..+..+...... ..++..+..|.+..++...-..... ..+.. ..+.. ...|.++.
T Consensus 97 l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~---~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~ 172 (276)
T 3no0_A 97 LAEFEYKAQGMPIIKLTEGDEVVSIASSVDE---THILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLR 172 (276)
T ss_dssp GGGTTTCSTTEECSCCCTTCCEEEEEECCSS---CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEE
T ss_pred HHHhhhhcCCeEEEecCCCCEEEEEEEeCCC---CEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEE
Confidence 6542 112223334455555444322 3677778889988887643211100 00000 01222 24566655
Q ss_pred EcCCCCEEEEEeCCCcEEEEeccCC-----CCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203 475 WSPDGLYITSGSADPVIHLFDIRYS-----ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL 537 (540)
Q Consensus 475 ~sp~g~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i 537 (540)
..+++.+++..+..|.++...+..- .++-+..+ ...+.+..+....+...++..+.+|.+..
T Consensus 173 ~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 173 IWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp EESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred EeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence 5556678888899999998887631 01112222 22334554443333345666667776654
No 386
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=71.65 E-value=15 Score=22.72 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=29.4
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 009203 31 ALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 31 ~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 73 (540)
.|+..+=...+++..|+++...+++.+++.++...+++.-+.+
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777888887777777788777766666554443
No 387
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=70.27 E-value=12 Score=21.84 Aligned_cols=29 Identities=10% Similarity=0.325 Sum_probs=15.8
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHhHH
Q 009203 41 KEVQHLRQRISYYKSQLEEAEKRLEDSQS 69 (540)
Q Consensus 41 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 69 (540)
+.+++...+|+-.+.++.+++.++.+++.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555443
No 388
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=70.22 E-value=16 Score=22.36 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQ 68 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 68 (540)
...+....+...+++-..||.++ |+.+|..++++++++.
T Consensus 7 rr~e~ld~l~~LEkqF~~LkEql--Y~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 7 RRSECVSEMLDLEKQFSELKEKL--FRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 33444455555666666777666 7777777777766643
No 389
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.11 E-value=64 Score=29.24 Aligned_cols=203 Identities=11% Similarity=0.027 Sum_probs=109.0
Q ss_pred cCCCeEEEEeecCCCCCeEEEEecCCCCCc----eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC--
Q 009203 284 PQGNSLFSAHTADSGDSQISVLNLNKTKGR----ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER-- 357 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-- 357 (540)
++..+++.. +.+|.|+--.+..-... .-...+... ..+.+..+.... +.+.++..+..|.++-+...
T Consensus 6 ~~e~~~v~~----T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk--e~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~i 78 (312)
T 1suu_A 6 QKENIVVML----TKKGFLKRLSQNEYKLQGTGGKGLSSFDLN--DGDEIVIALCVN-THDYLFMISNEGKLYLINAYEI 78 (312)
T ss_dssp --CEEEEEE----ETTCBEEEEEGGGSCBCCSSCCCEECCCCC--TTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGS
T ss_pred CCCCEEEEE----eCCCEEEEeEHHHhhccccCCCCceecccC--CCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHC
Confidence 455667777 89999988866543110 012222111 124455555554 55677777888887665543
Q ss_pred -CCCCcc--c--cceeecccCCcceeEEEecc---CCCEEEEEeCCCeEEEEECCC-------CCeeeeeccCccEEEEe
Q 009203 358 -DAEDSW--K--PKALHRNLHSSAVMGVAGMQ---QKQIVLSAGADKRIIGFDAGV-------GRADFKHQIESKCMSVL 422 (540)
Q Consensus 358 -~~~~~~--~--~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~ 422 (540)
...... . ...+. ......|.++...+ +..+++..+..|.++...+.. |........+..+..+.
T Consensus 79 p~~~r~~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~ 157 (312)
T 1suu_A 79 KDSSRASKGQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAE 157 (312)
T ss_dssp CC-------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEE
T ss_pred CCCCccCCCcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEE
Confidence 211000 0 00111 11234455554332 467788899999999888743 22222233345555555
Q ss_pred ecCCCCCceEEEEEcCCCeEEEEECCCCcceee-eeccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 423 PNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWK-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
....+ ..++..+.+|.+..+....-..... ..+.. ..+.. ...|.++..-.++..|++.+..|......+..
T Consensus 158 ~~~~~---~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 158 IVFKD---EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EECTT---CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EeCCC---CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 44322 3677788899999998764211100 00100 01222 34566665555667788888999999988864
No 390
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=69.92 E-value=6.1 Score=21.96 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=14.7
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhH
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRI 50 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~ 50 (540)
|.++.+|.|+..-.+.+.|+.+|+..+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344555555555555555555555443
No 391
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=69.81 E-value=66 Score=29.32 Aligned_cols=200 Identities=6% Similarity=-0.052 Sum_probs=103.3
Q ss_pred cCCCeEEEEeecCCCCCeEEEEecCCCC--CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe---cCC
Q 009203 284 PQGNSLFSAHTADSGDSQISVLNLNKTK--GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS---ERD 358 (540)
Q Consensus 284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd---~~~ 358 (540)
|+...+++. +.+|.|+--.+..-. ...... +. ..+.+..+.... +.+.|+..+..|.++-+. +..
T Consensus 3 ~~e~~~v~l----T~~G~IKr~~~~~~~~~~~~~~~-lk----e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~ 72 (323)
T 1wp5_A 3 ASEDVIVTV----TKDGYVKRTSLRSYAASNGQDFA-MK----DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPD 72 (323)
T ss_dssp SCCEEEEEE----ETTCEEEEEEHHHHHHTTTCCCC-CC----TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCB
T ss_pred cCCcEEEEE----eCCCEEEEeEHHHhhhcCccccc-cC----CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcC
Confidence 455667777 889999877554210 000011 11 124455555544 556677777788765544 332
Q ss_pred CCCccc-c---ceeecccCCcceeEEEecc---CCCEEEEEeCCCeEEEEECCC--------CCeeeeeccCccEEEEee
Q 009203 359 AEDSWK-P---KALHRNLHSSAVMGVAGMQ---QKQIVLSAGADKRIIGFDAGV--------GRADFKHQIESKCMSVLP 423 (540)
Q Consensus 359 ~~~~~~-~---~~~~~~~~~~~v~~l~~s~---~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~~~~ 423 (540)
...... . ..+. ......|.++...+ ++.+++.++.+|.++...+.. |........+..+..+..
T Consensus 73 ~~r~a~G~~i~~~i~-L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~ 151 (323)
T 1wp5_A 73 IRWKDLGQHIANIIP-IDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHL 151 (323)
T ss_dssp CCTTSCCEEGGGTSC-CCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEE
T ss_pred CCCCCCCcChhhccC-CCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEE
Confidence 211000 0 1111 11234465553333 256789999999999988742 222222333345554443
Q ss_pred cCCCCCceEEEEEcCCCeEEEEECCCCcceee-eeccc-cccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccC
Q 009203 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWK-QESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRY 498 (540)
Q Consensus 424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~-~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~ 498 (540)
...+ ..++..+.+|.+..|+...-..... ..+.. ..+. -...|.++..-+++. .|++.+..|..+..++..
T Consensus 152 ~~~~---~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 152 TDGM---NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp ECSC---SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred eCCC---CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 3322 2567777889988888754221110 01100 0122 223466654434444 788888889888877764
No 392
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=68.66 E-value=12 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhhHHHHHHhhHHHHHHH
Q 009203 30 EALVALIEHRTKEVQHLRQRISYYKSQ 56 (540)
Q Consensus 30 ~~~~~~i~~~~~~~~~l~~~~~~~~~~ 56 (540)
..+++.+++|..|+..|+.++...+.+
T Consensus 9 knyiqeleernaelknlkehlkfakae 35 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAKAE 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 345666777788888887775444433
No 393
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.56 E-value=24 Score=24.35 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
+.+..+..++..|+-...|++.||.+-+.+..+..++..
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666777777778788888888877666666555433
No 394
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=68.48 E-value=1.1e+02 Score=31.47 Aligned_cols=249 Identities=10% Similarity=0.046 Sum_probs=118.1
Q ss_pred EEEE-EecCCCcEEEEE-eC----CceEEEEEcCCCCCcceeecccccCCCCC--CCCceeEEEecCCCeEEEE------
Q 009203 227 RSLS-LNPVNEQLFVTS-AL----DGVIRLWQLQSRGSGASLLSTTDCLSPKH--RRWPEDIAWHPQGNSLFSA------ 292 (540)
Q Consensus 227 ~~l~-~spd~~~~l~tg-~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~~~~~~l~s~------ 292 (540)
..+. ++|| +++++.+ |. -..++++|+.+++.+..-.... ...|. ......++|..++.++++.
T Consensus 132 ~g~~~~~~~-~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~--~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 132 RGVSNCFQN-PNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPI--TNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEECSSS-TTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCB--CTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred eceeecCCC-CCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccc--cccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 3444 7886 5555543 32 2469999999876432111000 00000 0012345887444444432
Q ss_pred eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-----EEEEEecC---CcEEEEecCCCCCccc
Q 009203 293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-----CFATGGSD---HAVVLWSERDAEDSWK 364 (540)
Q Consensus 293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-----~l~s~~~d---g~i~iwd~~~~~~~~~ 364 (540)
.+..+....|+.|.+.+..... ...+.+.. ...-.+...++ ++. .+++.+.+ ..+++.|.......
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~--~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-- 282 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKA-KKLFEVPK--EYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLK-- 282 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGC-EEEEECCT--TSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE--
T ss_pred cCcCCCCCEEEEEECCCChHHC-eEEeccCC--CceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCc--
Confidence 0001224678999887763322 33344322 12233444555 544 24444322 34566666532210
Q ss_pred cceeecccCCcceeEEEeccCCCEEEEE----------eCCCeEEEEECCCCC-------e---eeeeccCccEEEEeec
Q 009203 365 PKALHRNLHSSAVMGVAGMQQKQIVLSA----------GADKRIIGFDAGVGR-------A---DFKHQIESKCMSVLPN 424 (540)
Q Consensus 365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~----------~~dg~i~iwd~~~~~-------~---~~~~~~~~~~~~~~~~ 424 (540)
...+... .. ..+..+.++.+++.. ...+.|...|+.++. . +........+..+.+.
T Consensus 283 ~~~l~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (711)
T 4hvt_A 283 LQKINMP--SD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTT 358 (711)
T ss_dssp EEECCSC--TT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEEC
T ss_pred ceEeecC--Cc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEE
Confidence 1122111 11 112334455555532 246678889987631 1 2233444556677777
Q ss_pred CCCCCceEEEEEcCCCe--EEEEECCCCcceeee-eccccccCccccCeEEEEEcCCCCEE-EEEeC---CCcEEEEecc
Q 009203 425 PCDFNLFMVQTGTPGRQ--LRLYDIRLRQTEIHA-FGWKQESSESQSALINQSWSPDGLYI-TSGSA---DPVIHLFDIR 497 (540)
Q Consensus 425 ~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l-~sg~~---dg~i~iwd~~ 497 (540)
.+. ++++...++. +.++|+.++...... + .+.. .+.+..+.+++++..+ ++.+. -+.+..+|+.
T Consensus 359 ~~~----l~~~~~~~~~~~l~~~~~~~g~~~~~~~i----~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 359 KDR----VFLATYDNVVAKVVTFTLENEQWTKPVVL----KLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp SSC----EEEEEEETTEEEEEEECEETTEECCCEEE----CCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCE----EEEEEEECCEEEEEEEECCCCceEEEecc----CCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 653 6677666765 666776544311111 1 1111 2346666677776544 33332 3567777765
No 395
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.46 E-value=16 Score=28.48 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 73 (540)
..+.+..-|.....++..++.++...+.++.++++++.+++.++.+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455445544444455555554444444444433
No 396
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.64 E-value=43 Score=33.55 Aligned_cols=59 Identities=8% Similarity=-0.066 Sum_probs=38.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC------------CcEEEEeccCCCCccccccccc-ccceeEEEEcCCCCEEEEE
Q 009203 469 ALINQSWSPDGLYITSGSAD------------PVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 469 ~v~~~~~sp~g~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~~l~s~ 529 (540)
..-.|+|+|.|++++.-..+ ..+.+.+..+ ++....+.++ ...++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~--g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT--GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT--CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC--CeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45779999999976654332 2244444444 4444444443 4589999999999977664
No 397
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.35 E-value=67 Score=28.46 Aligned_cols=166 Identities=8% Similarity=-0.022 Sum_probs=91.8
Q ss_pred ccceeEEEEeCC-CCCEEEEEecCCcEEEEecCCCCCc-cccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203 326 KGIINSIIFLPW-ENPCFATGGSDHAVVLWSERDAEDS-WKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA 403 (540)
Q Consensus 326 ~~~v~~~~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~ 403 (540)
...|..+.. +. +...++..+.+|.++-..+..-... .....+... ..+.+..+........++..+..|.+..++.
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 345666643 31 3568899999999999877543200 001111111 2355666655556678888999999888875
Q ss_pred CC---------CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee-eccccccCccccCeEEE
Q 009203 404 GV---------GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA-FGWKQESSESQSALINQ 473 (540)
Q Consensus 404 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~v~~~ 473 (540)
.. |........+..+.++...+.+ ..++..+..|.++...+......... .+.. .+ .....+..+
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~---~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~-~i-~~~~~lv~~ 219 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEKNDETSGLRIWNGE---PYLLVITAKGRVKKISHEEIPKTNRGVKGTE-VS-GTKDTLVDL 219 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCTTCCEEEEEEESSC---SEEEEEETTSCEEEEEGGGSCCCCTTCCCEE-CC-CSSSCEEEE
T ss_pred hhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCC---CEEEEEeCCCcEEEeEHHHcccCCCCCcceE-EE-cCCCcEEEE
Confidence 32 1111223334555555444333 36777888999998887543211110 0000 11 112344444
Q ss_pred EEcCCCCEEEEEeCCCcEEE--EeccC
Q 009203 474 SWSPDGLYITSGSADPVIHL--FDIRY 498 (540)
Q Consensus 474 ~~sp~g~~l~sg~~dg~i~i--wd~~~ 498 (540)
....+...++..+.+|.+.. ++...
T Consensus 220 ~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 220 IPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 33334456777778888888 87764
No 398
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=67.08 E-value=6.5 Score=26.01 Aligned_cols=44 Identities=23% Similarity=0.447 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhccC
Q 009203 27 EQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQ 77 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 77 (540)
.+.|.+...|..+...+.+|... |.+....+.+++..|.++++.
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~-------L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKR-------LSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666444 444455555555666666554
No 399
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.32 E-value=5.6 Score=38.02 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=16.1
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203 31 ALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQ 68 (540)
Q Consensus 31 ~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 68 (540)
+|.+.|+.++.+|+.--+.|..||..|+++..++..++
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444442222444444555544444444333
No 400
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=65.24 E-value=6.2 Score=19.65 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=7.6
Q ss_pred hhHHHHHHhhHHHHHHH
Q 009203 40 TKEVQHLRQRISYYKSQ 56 (540)
Q Consensus 40 ~~~~~~l~~~~~~~~~~ 56 (540)
++....|+++|+.++-+
T Consensus 6 kqknarlkqeiaaleye 22 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 33444555554444333
No 401
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.71 E-value=21 Score=27.25 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDS 67 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 67 (540)
...++.+..-..+.|++.|+.++.+++.+|++.+..+.++
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777889999988888888888776665554
No 402
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=63.70 E-value=20 Score=24.23 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhhhhHHH----HHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 009203 27 EQEEALVALIEHRTKEVQ----HLRQRISYYKSQLEEAEKRLEDSQSKLA 72 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~----~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 72 (540)
++.+.+..-|.+-.+.+. ..+.+++.+..+|..+++++.=++.+++
T Consensus 20 e~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAkls 69 (75)
T 3p8c_E 20 EYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVT 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666665553 3555666666666666666666665553
No 403
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=63.34 E-value=34 Score=24.19 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHH---HH---HHHHHHHHHHHHhHHHHH
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISY---YK---SQLEEAEKRLEDSQSKLA 72 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~---~~---~~l~~~~~~~~~~~~~l~ 72 (540)
.++.|-+.|+..+.++..|...++. |. .++.++..++..++..|.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777766642 21 234444444444444443
No 404
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=63.24 E-value=9.9 Score=27.81 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=8.6
Q ss_pred hhhHHHHHHhhHHHHHHHHHHH
Q 009203 39 RTKEVQHLRQRISYYKSQLEEA 60 (540)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~l~~~ 60 (540)
.+.++..|+.++..++.++..+
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333
No 405
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.90 E-value=13 Score=25.59 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
++..+...+++...+.+.++.++..+...|.-.--.+.+++..|+++-
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 333334444444444444444444444444433334555556666543
No 406
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=62.36 E-value=94 Score=28.37 Aligned_cols=207 Identities=8% Similarity=-0.015 Sum_probs=106.5
Q ss_pred cceeEEEEeCCCCCEEEEEecCCcEEE---EecCCCCCccccce---eecccCCcceeEEEecc---CCCEEEEEeCCCe
Q 009203 327 GIINSIIFLPWENPCFATGGSDHAVVL---WSERDAEDSWKPKA---LHRNLHSSAVMGVAGMQ---QKQIVLSAGADKR 397 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~---~~~~~~~~~v~~l~~s~---~~~~l~~~~~dg~ 397 (540)
+.+..+.... +...|+.-+..|.++- |++........-.. +........|.++...+ +..++++.+.+|.
T Consensus 42 D~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 4455554444 5556666666777654 44443211000000 11111344566554433 5789999999999
Q ss_pred EEEEECCCC-------CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC--CCcceee-eeccc-cccCcc
Q 009203 398 IIGFDAGVG-------RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR--LRQTEIH-AFGWK-QESSES 466 (540)
Q Consensus 398 i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~--~~~~~~~-~~~~~-~~~~~~ 466 (540)
++...+..- ........+..+..+...... ..++..+..|.+..+... .-..... ..+.. ..+. .
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~---d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~ 196 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAG---DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-I 196 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTT---CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-T
T ss_pred EEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCC---CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-C
Confidence 999886541 112223334445544433332 357777788998888776 2111000 00100 0122 2
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC-----Ccccc--cccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203 467 QSALINQSWSPDGLYITSGSADPVIHLFDIRYSA-----NKPSQ--SIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538 (540)
Q Consensus 467 ~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~-----~~~~~--~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw 538 (540)
...|.++..-+++.+|+..+..|.++.-.+..-. +.-+. .+..-.+.+..+....+...++..+.+|.+.-+
T Consensus 197 ~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~ 275 (327)
T 3uc1_A 197 DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRT 275 (327)
T ss_dssp TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEE
T ss_pred CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEE
Confidence 3457776666667789999999999888765310 01111 222212335444444444456666667665444
No 407
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=61.54 E-value=30 Score=25.20 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHH
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSK 70 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 70 (540)
.+..|.+.|+..+.+++.+...+...+.+|.+.+....+++..
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~e 87 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESE 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555544444433333
No 408
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=61.48 E-value=34 Score=23.01 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhhhhhHH----HHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 009203 27 EQEEALVALIEHRTKEV----QHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~----~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 73 (540)
++.+.+..-|.+..+.+ ...+.+++.+..+|..+++++.=++.+++.
T Consensus 20 e~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 20 EFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566655566655555 446667777777777777777777766654
No 409
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=61.17 E-value=5.8 Score=21.58 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHH
Q 009203 25 KDEQEEALVALIEHRTKEVQHLR 47 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~ 47 (540)
.++.+|+++....+.+.|+..|+
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33445555555555555554443
No 410
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=60.93 E-value=17 Score=33.07 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 009203 29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKL 71 (540)
Q Consensus 29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 71 (540)
...+..+|...+.++..|+..+...+.++.+++.++.+++..+
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666677776666666666666666655555443
No 411
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=60.61 E-value=6.9 Score=21.49 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=13.5
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHh
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQ 48 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~ 48 (540)
|.++..|.|+..-.+.+.|+.+|+.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555555555555555543
No 412
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=60.53 E-value=1.1e+02 Score=28.53 Aligned_cols=153 Identities=10% Similarity=0.042 Sum_probs=83.6
Q ss_pred ecCCCeEEEEeecCCCCCeEEEEecCC-------CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE-
Q 009203 283 HPQGNSLFSAHTADSGDSQISVLNLNK-------TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW- 354 (540)
Q Consensus 283 ~~~~~~l~s~~~~~~~d~~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw- 354 (540)
-|+..++++. +.+|.|+--.+.. +.+...+. +. ..+.+..+.... ....|+..+..|.++-+
T Consensus 4 I~~e~~~v~l----T~~GyIKr~~l~~y~~~~r~g~g~~~~~-lk----e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~ 73 (370)
T 3l6v_A 4 IAPEDVVVTL----SHAGYAKRQPVSAYRAQRRGGRGRSAAS-TK----EEDFIDQLWLVN-THDTLLTFTSSGKVFWLP 73 (370)
T ss_dssp CCCCCEEEEE----ESSCEEEEEEHHHHHHTCCCCCCSEEEE-CS----CCCCEEEEEEEC-TTCEEEEEETTSEEEEEE
T ss_pred ccCCCEEEEE----eCCCEEEEeeHHHhhhhccCCCCceecc-cC----CCCEEEEEEEec-CCCEEEEEeCCCeEEEEE
Confidence 3566788888 8999998765432 11111222 22 135566666665 55667777777876654
Q ss_pred --ecCCCCCccc----cceeecccCCcceeEEEecc---CCCEEEEEeCCCeEEEEECCC-------CCeeeeeccCccE
Q 009203 355 --SERDAEDSWK----PKALHRNLHSSAVMGVAGMQ---QKQIVLSAGADKRIIGFDAGV-------GRADFKHQIESKC 418 (540)
Q Consensus 355 --d~~~~~~~~~----~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~ 418 (540)
++........ ...+. ......|.++.... ++.+|+.++..|.++...+.. |...........+
T Consensus 74 ~~eip~~~r~a~G~~i~~ll~-L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~l 152 (370)
T 3l6v_A 74 VHQLPEAGSNARGRPIINWIP-LESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 152 (370)
T ss_dssp GGGSCBCCTTSCCEEGGGSCC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCE
T ss_pred HHHCcCCCcccCCcCHhhccC-CCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEE
Confidence 4432211000 01111 12345566654432 456899999999999988642 2222223334455
Q ss_pred EEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203 419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL 449 (540)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 449 (540)
..+.....+ ..++..+.+|.+..|+...
T Consensus 153 v~v~~~~~~---~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 153 VGVALTDGD---RDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEEECSC---CEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCC---ceEEEEeCCCeEEEEEccc
Confidence 554443322 2566677788888887653
No 413
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=59.02 E-value=1e+02 Score=27.76 Aligned_cols=253 Identities=11% Similarity=0.046 Sum_probs=123.2
Q ss_pred CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec---CCCCC
Q 009203 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL---NKTKG 312 (540)
Q Consensus 236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~---~~~~~ 312 (540)
..++++.+.+|.|+--.+..-.....-............+.+..+......+.|+.. +..|.+.-+.. .....
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~f----T~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCF----SSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEE----ETTSEEEEEEGGGSCCCCS
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEE----ECCCEEEEEEhhHCcCCCC
Confidence 567888899999987666542211100000000000122334444444444555555 67777655543 32211
Q ss_pred ---ceeE-EeecCCCCcccceeEEEEeC--CCCCEEEEEecCCcEEEEecCCCCCcc--ccceeecccCCcceeEEEecc
Q 009203 313 ---RACV-TFLDDKPHVKGIINSIIFLP--WENPCFATGGSDHAVVLWSERDAEDSW--KPKALHRNLHSSAVMGVAGMQ 384 (540)
Q Consensus 313 ---~~~~-~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~l~~s~ 384 (540)
...+ ..+.. .....|.++...+ .+..+++..+.+|.++-..+..-.... ....+....+ +.+..+....
T Consensus 79 ~a~G~~i~~~l~l--~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 79 GARGRPIVNLLPL--EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSCCEEGGGTSCC--CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCeEhhhccCC--CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 0111 11111 1134466554421 145678889999999988765322110 0111211223 5555555555
Q ss_pred CCCEEEEEeCCCeEEEEECCCCC---------eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203 385 QKQIVLSAGADKRIIGFDAGVGR---------ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455 (540)
Q Consensus 385 ~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 455 (540)
+...++..+.+|.+..++...-. .......+..+.++.....+ ..+++.+..|.++-.++........
T Consensus 156 ~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~---~~ll~~T~~G~~Kr~~~~e~~~~~R 232 (307)
T 1zi0_A 156 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD---GAILTATQNGYGKRTAVAEYPTKSR 232 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS---CEEEEEETTSEEEEECGGGSCCCCT
T ss_pred CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC---CEEEEEEcCCceEEEEHHHhccCCC
Confidence 56678888899998888764311 11223334556666544332 3677788889999887743221100
Q ss_pred -eecc-ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203 456 -AFGW-KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY 498 (540)
Q Consensus 456 -~~~~-~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~ 498 (540)
..+. ...+....+.+..+....+...|+..+.+|.+.-+.+..
T Consensus 233 g~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 233 ATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 0000 001222224455544433445566667788877777764
No 414
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.94 E-value=13 Score=18.51 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=2.6
Q ss_pred HHHHhhH
Q 009203 44 QHLRQRI 50 (540)
Q Consensus 44 ~~l~~~~ 50 (540)
+.|.++|
T Consensus 10 daleqki 16 (28)
T 3ra3_A 10 DALEQKI 16 (28)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 415
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=57.29 E-value=26 Score=24.66 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=16.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 44 QHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 44 ~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
..+..+...++.+...|+.++..+..++..++
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555544443
No 416
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=57.13 E-value=38 Score=22.18 Aligned_cols=40 Identities=8% Similarity=0.234 Sum_probs=26.1
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 009203 34 ALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 34 ~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 73 (540)
..++...+|+.+|+...+....++.+-.+++.++.-++.+
T Consensus 10 ~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLk 49 (65)
T 3t97_B 10 TRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4556667777777777666666677666666666655443
No 417
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=56.78 E-value=4.3 Score=20.91 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=9.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHH
Q 009203 41 KEVQHLRQRISYYKSQLEEAE 61 (540)
Q Consensus 41 ~~~~~l~~~~~~~~~~l~~~~ 61 (540)
+.+..|.++.+.++.++..++
T Consensus 7 qkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 7 QKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp HHHHHHHHHTSSHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 418
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=56.18 E-value=27 Score=21.13 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=14.6
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 31 ALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 31 ~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
++++--..-...++.|.++++..-++++.+++
T Consensus 13 slv~FQ~~v~~~l~~Lt~kL~~vt~rle~lEn 44 (47)
T 1aq5_A 13 SIVKFQTKVEELINTLQQKLEAVAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34443334444555555554444444444443
No 419
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=55.60 E-value=8.7 Score=19.62 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=7.1
Q ss_pred HHHhhhhhHHHHHHhh
Q 009203 34 ALIEHRTKEVQHLRQR 49 (540)
Q Consensus 34 ~~i~~~~~~~~~l~~~ 49 (540)
+++.-.+.|.++|+.+
T Consensus 6 allasleaenkqlkak 21 (31)
T 1p9i_A 6 ALLASLEAENKQLKAK 21 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 420
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=55.56 E-value=1.9e+02 Score=29.77 Aligned_cols=228 Identities=11% Similarity=0.082 Sum_probs=109.1
Q ss_pred EecCCCeEEEEeecCC-CCCeEEEEecCCCCCceeEEeecCCC-Cccc------ceeEEEEeCCCCCEEEEEe-------
Q 009203 282 WHPQGNSLFSAHTADS-GDSQISVLNLNKTKGRACVTFLDDKP-HVKG------IINSIIFLPWENPCFATGG------- 346 (540)
Q Consensus 282 ~~~~~~~l~s~~~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~------~v~~~~~~p~~~~~l~s~~------- 346 (540)
++|++++++.+.+.|+ .-..++++|+.+++ .+ -.+.. ..+. ....++|.. +...+++..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~---~~--~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKD---FV--KNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEIT 210 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTE---EC--TTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCC---cC--CCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcC
Confidence 7889998877755544 44579999999862 11 11100 0000 123457874 444444321
Q ss_pred ---cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCC-----EEEEEeCC---CeEEEEECCC--CCeeeeec
Q 009203 347 ---SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-----IVLSAGAD---KRIIGFDAGV--GRADFKHQ 413 (540)
Q Consensus 347 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-----~l~~~~~d---g~i~iwd~~~--~~~~~~~~ 413 (540)
....|+.|.+.+.... -..+........-.+...++++. .+++.+.+ ..+.+.|... ++.. ...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 287 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEK--AKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KIN 287 (711)
T ss_dssp TTSSBCEEEEEETTSCGGG--CEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECC
T ss_pred cCCCCCEEEEEECCCChHH--CeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-Eee
Confidence 1246888887765421 12222111222223344556665 24443322 3466667653 3211 111
Q ss_pred cCccEEEEeecCCCCCceEEEEE----------cCCCeEEEEECCCCc------ceeeeeccccccCccccCeEEEEEcC
Q 009203 414 IESKCMSVLPNPCDFNLFMVQTG----------TPGRQLRLYDIRLRQ------TEIHAFGWKQESSESQSALINQSWSP 477 (540)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~----------~~dg~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~sp 477 (540)
...... +.....+ .+++.. ...+.|...|+.+.. .....+ ........+..+.|..
T Consensus 288 ~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 359 (711)
T 4hvt_A 288 MPSDAT-LQGSFKE---YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL----FTPTANEVFNFISTTK 359 (711)
T ss_dssp SCTTCE-EEEEETT---EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE----ECCCTTEEEEEEEECS
T ss_pred cCCcce-EeeeECC---EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE----ECCCCCCeEEEEEEEC
Confidence 111111 1122222 233321 246778888887632 111110 1122344678888986
Q ss_pred CCCEEEEEeCCCc--EEEEeccCCCCc-cccc---ccccccceeEEEEcCCCC-EEEEEE
Q 009203 478 DGLYITSGSADPV--IHLFDIRYSANK-PSQS---IRAHQKRVFKAVWHYSHP-LLISIS 530 (540)
Q Consensus 478 ~g~~l~sg~~dg~--i~iwd~~~~~~~-~~~~---~~~h~~~i~~l~~s~~~~-~l~s~~ 530 (540)
+ .++++...++. |.++++.+ +. .... +.. .+.+..+.+++++. ++++.+
T Consensus 360 ~-~l~~~~~~~~~~~l~~~~~~~--g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 360 D-RVFLATYDNVVAKVVTFTLEN--EQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp S-CEEEEEEETTEEEEEEECEET--TEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEE
T ss_pred C-EEEEEEEECCEEEEEEEECCC--CceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEe
Confidence 5 56667766764 66777654 32 1222 221 23566666667765 444443
No 421
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=55.23 E-value=48 Score=22.96 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 009203 50 ISYYKSQLEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~~l~~ 73 (540)
|...+.++++++.+++....++..
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555444444433
No 422
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=54.35 E-value=8.8 Score=20.99 Aligned_cols=20 Identities=15% Similarity=0.352 Sum_probs=8.6
Q ss_pred hHHHHHHHHHhhhhhHHHHH
Q 009203 27 EQEEALVALIEHRTKEVQHL 46 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l 46 (540)
+..|.|+..-...+.|+..|
T Consensus 8 dKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHH
Confidence 44444444444444444444
No 423
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=54.06 E-value=15 Score=20.08 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=11.6
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHH
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLR 47 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~ 47 (540)
|.++.+|.|...-...+.|+..|+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334445555554444455554443
No 424
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=53.91 E-value=24 Score=28.92 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLA 72 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 72 (540)
+.+-.+.+..+|....+.+..|+.++..++++.+.|+.+.++...++.
T Consensus 136 v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 136 VENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556666677777777777777777778888888777777666654
No 425
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=53.90 E-value=25 Score=24.73 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=25.8
Q ss_pred CCCChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 21 GCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 21 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
..++.++..+.|...++.|..+..+.+.+.++.+.++.+..+
T Consensus 25 ~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e 66 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 66 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777778888877776665554444444444443
No 426
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=53.82 E-value=43 Score=24.85 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=30.9
Q ss_pred cCCCCChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHH
Q 009203 19 NGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEA 60 (540)
Q Consensus 19 ~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~ 60 (540)
++.+.++++..|++...+=+.+.|+.++++-+-.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~ 54 (125)
T 4g2k_A 13 QGNMKQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRL 54 (125)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 355667888899999999999999999888776665555444
No 427
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.78 E-value=38 Score=27.59 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=25.3
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKL 71 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 71 (540)
..+..+..|+.-...+.++++....++..++.++..++.+....+.++
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 334444445555555555666666666666666666666554444333
No 428
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.55 E-value=39 Score=21.83 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=20.3
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 37 EHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
+++...++.|..++..+..+..++..++..++.++..+
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555554443
No 429
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=53.41 E-value=35 Score=24.87 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKL 71 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 71 (540)
...+|.+.|+..+.+++.+...+...+.+|.+.+.....++...
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ev 88 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEV 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555444554544444444443333
No 430
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=52.68 E-value=45 Score=33.17 Aligned_cols=60 Identities=7% Similarity=-0.074 Sum_probs=39.3
Q ss_pred cCeEEEEEcCCCCEEEEEeC------------CCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCCEEEEE
Q 009203 468 SALINQSWSPDGLYITSGSA------------DPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHPLLISI 529 (540)
Q Consensus 468 ~~v~~~~~sp~g~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~~l~s~ 529 (540)
.....|.|+++|.+.++... ...++.++..+ ++....+.+. ...++.++|+||++.|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t--Gel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT--GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT--CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC--CeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 46788999999988773321 12455555554 4443333332 3468999999999977665
No 431
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=51.89 E-value=44 Score=21.77 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=18.2
Q ss_pred HhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 009203 36 IEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLA 72 (540)
Q Consensus 36 i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 72 (540)
-+++..+.+.|..++..++.+..+++.++..++.+..
T Consensus 18 R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555544443
No 432
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=51.35 E-value=71 Score=23.57 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=10.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203 43 VQHLRQRISYYKSQLEEAEKRLEDSQ 68 (540)
Q Consensus 43 ~~~l~~~~~~~~~~l~~~~~~~~~~~ 68 (540)
+++|+-+|..+..+|.++..+++.++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 433
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=51.23 E-value=42 Score=20.91 Aligned_cols=43 Identities=5% Similarity=0.083 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHH
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSK 70 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 70 (540)
..+.|..-++.+..++++|+..+..++.+....+.+-.....+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555544444444333333333333
No 434
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=51.08 E-value=16 Score=33.54 Aligned_cols=8 Identities=13% Similarity=0.052 Sum_probs=3.0
Q ss_pred ccccCCCc
Q 009203 4 LIVKKPKQ 11 (540)
Q Consensus 4 ~~~~~~~~ 11 (540)
+++++-++
T Consensus 96 ~lk~~~~q 103 (390)
T 1deq_A 96 LMRGDFAK 103 (390)
T ss_pred HHHHHHHh
Confidence 33333333
No 435
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.82 E-value=16 Score=36.96 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHh
Q 009203 54 KSQLEEAEKRLEDS 67 (540)
Q Consensus 54 ~~~l~~~~~~~~~~ 67 (540)
+.++++.++++.++
T Consensus 550 e~~~~~~~~~~~~l 563 (597)
T 3oja_B 550 EKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHH
Confidence 33333333333333
No 436
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=50.71 E-value=18 Score=23.15 Aligned_cols=30 Identities=7% Similarity=0.222 Sum_probs=14.0
Q ss_pred HHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 009203 32 LVALIEHRTKEVQHLRQRISYYKSQLEEAE 61 (540)
Q Consensus 32 ~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~ 61 (540)
..+-+++...+++.|..+...++.++..++
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556665555444444444443
No 437
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.70 E-value=39 Score=25.24 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKR 63 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~ 63 (540)
.++..+.|...++..+.+++.|..++..++.++.+++.+
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544444444444444433
No 438
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=50.40 E-value=45 Score=24.41 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhhhhhHHHHHHhhHHHHHH
Q 009203 27 EQEEALVALIEHRTKEVQHLRQRISYYKS 55 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 55 (540)
.+..+...+++.+..++++|+.++++.+.
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677777777777777766655
No 439
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=50.05 E-value=59 Score=22.31 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 009203 29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLED 66 (540)
Q Consensus 29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 66 (540)
.+.+.+.++..+.+...|+.++..++.+|++.+.+-+.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~ 45 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERER 45 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555544333
No 440
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=49.96 E-value=54 Score=22.40 Aligned_cols=15 Identities=20% Similarity=0.374 Sum_probs=5.7
Q ss_pred HHHHhhHHHHHHHHH
Q 009203 44 QHLRQRISYYKSQLE 58 (540)
Q Consensus 44 ~~l~~~~~~~~~~l~ 58 (540)
..+..+-.+|+++|.
T Consensus 36 ~elEnErlQyEkKLK 50 (81)
T 3qh9_A 36 EELENERNQYEWKLK 50 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333444433
No 441
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.77 E-value=29 Score=38.30 Aligned_cols=37 Identities=5% Similarity=0.085 Sum_probs=30.8
Q ss_pred ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee
Q 009203 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH 412 (540)
Q Consensus 376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 412 (540)
.+.+++..++..++++-+.|+++|+||+.+++++...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556666778899999999999999999999886653
No 442
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=49.75 E-value=45 Score=20.79 Aligned_cols=37 Identities=5% Similarity=0.105 Sum_probs=19.8
Q ss_pred HHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 009203 35 LIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKL 71 (540)
Q Consensus 35 ~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 71 (540)
.|+++..+++.|..++.+++.+...+.........+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666655555555444444333
No 443
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=49.09 E-value=26 Score=31.90 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHH
Q 009203 27 EQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQS 69 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 69 (540)
+..+.+.++.+...++++.|+.+...++.++++++++.+....
T Consensus 171 e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 171 ELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444555555667777777777777777777665544443
No 444
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=48.36 E-value=13 Score=20.46 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHhhhhhHHHHH
Q 009203 26 DEQEEALVALIEHRTKEVQHL 46 (540)
Q Consensus 26 ~~~~~~~~~~i~~~~~~~~~l 46 (540)
++..|.|...-.+.+.|+..|
T Consensus 7 EdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHH
Confidence 344444444444444444443
No 445
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.31 E-value=54 Score=21.33 Aligned_cols=37 Identities=5% Similarity=0.134 Sum_probs=18.1
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 009203 37 EHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 73 (540)
+++...++.|..+...++.+..++..++..++..+..
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555544444433
No 446
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=48.28 E-value=39 Score=19.68 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=9.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHH
Q 009203 40 TKEVQHLRQRISYYKSQLEEAE 61 (540)
Q Consensus 40 ~~~~~~l~~~~~~~~~~l~~~~ 61 (540)
+....+|..+++.++.+...+.
T Consensus 16 e~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3333444444444444444443
No 447
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=47.53 E-value=62 Score=21.77 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 31 ALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 31 ~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
.+.+.++..+.+...|+.++..++.+|++.+.+-..++..+.++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.37 E-value=48 Score=22.96 Aligned_cols=20 Identities=0% Similarity=0.167 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 009203 54 KSQLEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 54 ~~~l~~~~~~~~~~~~~l~~ 73 (540)
+.+++++..+...++.++..
T Consensus 60 ~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 60 QQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 449
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=47.15 E-value=1.8e+02 Score=27.03 Aligned_cols=250 Identities=11% Similarity=0.071 Sum_probs=125.6
Q ss_pred cCCCcEEEEEeCCceEEEEEcCCCC-------CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203 233 PVNEQLFVTSALDGVIRLWQLQSRG-------SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL 305 (540)
Q Consensus 233 pd~~~~l~tg~~dg~v~iw~~~~~~-------~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw 305 (540)
|+ ..++++.+.+|.|+--.+..-. ....+. ....+.+..+........|+.. +..|.+.-+
T Consensus 5 ~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~-------lke~D~l~~~~~~~t~d~ll~f----T~~G~~~~~ 72 (370)
T 3l6v_A 5 AP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAS-------TKEEDFIDQLWLVNTHDTLLTF----TSSGKVFWL 72 (370)
T ss_dssp CC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEE-------CSCCCCEEEEEEECTTCEEEEE----ETTSEEEEE
T ss_pred cC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecc-------cCCCCEEEEEEEecCCCEEEEE----eCCCeEEEE
Confidence 53 6788999999999875543211 011110 1233455555555555555555 567766555
Q ss_pred e---cCCCC----CceeEEeecCCCCcccceeEEEEeC--CCCCEEEEEecCCcEEEEecCCCCCcc--ccceeecccCC
Q 009203 306 N---LNKTK----GRACVTFLDDKPHVKGIINSIIFLP--WENPCFATGGSDHAVVLWSERDAEDSW--KPKALHRNLHS 374 (540)
Q Consensus 306 d---~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~ 374 (540)
. +.... +......+... ....|.++.... .+..+|+.++..|.++...+..-.... ....+... ..
T Consensus 73 ~~~eip~~~r~a~G~~i~~ll~L~--~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~-~~ 149 (370)
T 3l6v_A 73 PVHQLPEAGSNARGRPIINWIPLE--SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLD-EG 149 (370)
T ss_dssp EGGGSCBCCTTSCCEEGGGSCCCC--TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC-TT
T ss_pred EHHHCcCCCcccCCcCHhhccCCC--CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC-CC
Confidence 4 33221 11111111111 134466554432 135689999999999988764322100 01112111 23
Q ss_pred cceeEEEeccCCCEEEEEeCCCeEEEEECCCCC---------eeeeeccCccEEEEeecCCC------------------
Q 009203 375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGR---------ADFKHQIESKCMSVLPNPCD------------------ 427 (540)
Q Consensus 375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~------------------ 427 (540)
+.+..+........++..+.+|.+..|+...-. .......+..+.++...+..
T Consensus 150 d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t 229 (370)
T 3l6v_A 150 DALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVET 229 (370)
T ss_dssp CCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC------------------
T ss_pred CEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccc
Confidence 455555555556678888889998888764311 11122233455554433310
Q ss_pred --------------CCceEEEEEcCCCeEEEEECCCCcceeee-eccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcE
Q 009203 428 --------------FNLFMVQTGTPGRQLRLYDIRLRQTEIHA-FGWK-QESSESQSALINQSWSPDGLYITSGSADPVI 491 (540)
Q Consensus 428 --------------~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i 491 (540)
.....+++.+..|..+...+........- .+.. ..+....+.+..+.+..+...++..+..|.+
T Consensus 230 ~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 230 TDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp -----------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred cccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 01147888889999998887642211100 0000 0122223345554333344455556677777
Q ss_pred EEEecc
Q 009203 492 HLFDIR 497 (540)
Q Consensus 492 ~iwd~~ 497 (540)
.-..+.
T Consensus 310 iR~~v~ 315 (370)
T 3l6v_A 310 VRTRGS 315 (370)
T ss_dssp EEEEGG
T ss_pred EEeeHh
Confidence 666655
No 450
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.63 E-value=68 Score=21.98 Aligned_cols=48 Identities=33% Similarity=0.454 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhhh---hhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 27 EQEEALVALIEHR---TKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 27 ~~~~~~~~~i~~~---~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
++..+|.+-|+-+ .+|+.+.+...-..+.+|.+.+.+..++...+.++
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444 33444444444445556666666555554444433
No 451
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.39 E-value=58 Score=21.19 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
.+.+...++..+.+...|+.+++.++.++..+..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444433
No 452
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=46.37 E-value=51 Score=25.34 Aligned_cols=43 Identities=7% Similarity=0.126 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203 26 DEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQ 68 (540)
Q Consensus 26 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 68 (540)
++..+.+.+.++.....++.++..+...+.++..++..++++.
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555555444443
No 453
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=46.35 E-value=53 Score=20.73 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=14.1
Q ss_pred HHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 009203 33 VALIEHRTKEVQHLRQRISYYKSQLEEAE 61 (540)
Q Consensus 33 ~~~i~~~~~~~~~l~~~~~~~~~~l~~~~ 61 (540)
.+.|++..+-...|..++..+|+++..++
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 34455555555555555444444444443
No 454
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.32 E-value=30 Score=29.84 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 009203 37 EHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRC 76 (540)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 76 (540)
+.+..++..|..+...+...|.++++++..++.++.+++.
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444555555544566666777777777777777654
No 455
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=45.99 E-value=20 Score=19.66 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=8.1
Q ss_pred hHHHHHHHHHhhhhhHHHHH
Q 009203 27 EQEEALVALIEHRTKEVQHL 46 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l 46 (540)
+.+|+|...-.+.+.|+.+|
T Consensus 8 dkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 8 DAVEELASANYHLANAVARL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 33444444333444444443
No 456
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.61 E-value=66 Score=32.25 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=39.0
Q ss_pred eeEEEEeCCCCCEEEEEecC------------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE
Q 009203 329 INSIIFLPWENPCFATGGSD------------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA 392 (540)
Q Consensus 329 v~~~~~~p~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 392 (540)
.-.|+|+| .|.+++.-..+ ..+.+.+..+++. ..+........++.++|+||++.|++.
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~----~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI----RRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE----EEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeE----EEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 56799999 88766654322 2355556666653 333333356789999999999888765
No 457
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=45.21 E-value=47 Score=24.24 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 009203 26 DEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKR 63 (540)
Q Consensus 26 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~ 63 (540)
++..+.+...++..+.+++.|..++..++.++.+++.+
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544444444444444433
No 458
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=45.16 E-value=33 Score=17.97 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=2.2
Q ss_pred hHHHHH
Q 009203 41 KEVQHL 46 (540)
Q Consensus 41 ~~~~~l 46 (540)
+++..|
T Consensus 6 e~~r~l 11 (32)
T 2akf_A 6 EDVRNL 11 (32)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 459
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.09 E-value=39 Score=31.97 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 009203 27 EQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRC 76 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 76 (540)
...+.+.+.++.+++++++++.++..++.++.+.+.....+..++..++.
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444555555556666666666555555555555555555556665543
No 460
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=44.58 E-value=48 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 009203 29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLED 66 (540)
Q Consensus 29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 66 (540)
....+.-|.+..++++.|+.++..++.+...++.++..
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555566666666666666666665544
No 461
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=44.53 E-value=76 Score=31.57 Aligned_cols=62 Identities=6% Similarity=0.032 Sum_probs=40.2
Q ss_pred cceeEEEEeCCCCCEEEEEec------------CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe
Q 009203 327 GIINSIIFLPWENPCFATGGS------------DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG 393 (540)
Q Consensus 327 ~~v~~~~~~p~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 393 (540)
.....|.|.+ +|.+.+.... ...|..++..+++. ..+........++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel----~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI----RRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE----EEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE----EEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3467899999 8877763221 12566667766663 3332212345789999999999888764
No 462
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.46 E-value=72 Score=21.64 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhHHHHHH
Q 009203 57 LEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 57 l~~~~~~~~~~~~~l~~ 73 (540)
+.++...+..++..+..
T Consensus 58 i~elrr~iq~L~~el~s 74 (77)
T 3trt_A 58 STEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444433
No 463
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.99 E-value=37 Score=24.53 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhhhhhHHHHHHhhHHHHHH
Q 009203 27 EQEEALVALIEHRTKEVQHLRQRISYYKS 55 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 55 (540)
+.++.+...|+..+.|.+.|+++++.++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443333
No 464
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=43.69 E-value=16 Score=20.02 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhhhhHHHH
Q 009203 28 QEEALVALIEHRTKEVQH 45 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~ 45 (540)
.+|.|...-+..+.|+.+
T Consensus 9 kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHH
Confidence 333333333333333333
No 465
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.41 E-value=64 Score=20.77 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 009203 29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEAE 61 (540)
Q Consensus 29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~ 61 (540)
.+.|...++..+.+...|+.++..++.++..+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555444444444443
No 466
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=43.35 E-value=1.5e+02 Score=30.48 Aligned_cols=75 Identities=9% Similarity=0.064 Sum_probs=0.0
Q ss_pred eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC-----CCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203 226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK-----HRRWPEDIAWHPQGNSLFSAHTADSGDS 300 (540)
Q Consensus 226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-----h~~~V~~~~~~~~~~~l~s~~~~~~~d~ 300 (540)
|.|+.+ +..+|++-+.|.++|+|++.+++++.+..........+ ....-.-+.... .+++++.+ ..+|
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~---~~lv~y~P-~~~G 296 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYN---NTLVTLLP-LENG 296 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESS---SEEEEEET-TTTC
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhee---eEEEEEec-CCCC
Q ss_pred eEEEEec
Q 009203 301 QISVLNL 307 (540)
Q Consensus 301 ~i~vwd~ 307 (540)
..++|.+
T Consensus 297 ~Fk~~~l 303 (729)
T 3f7f_A 297 LFQMGTL 303 (729)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
No 467
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.21 E-value=76 Score=23.39 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 009203 50 ISYYKSQLEEAEKRLEDSQSKLARLRC 76 (540)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~~l~~~~~ 76 (540)
+..++-++..+..++.++...+.++|.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555543
No 468
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=42.55 E-value=58 Score=21.51 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHhhHHHHHH
Q 009203 27 EQEEALVALIEHRTKEVQHLRQRISYYKS 55 (540)
Q Consensus 27 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 55 (540)
+...+|...++.+..++.+|+.++..++.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666655544433
No 469
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.34 E-value=67 Score=20.74 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=26.4
Q ss_pred HHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 33 VALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 33 ~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
..--+++...++.|..++..+..+..++..++..++.++..++
T Consensus 14 ~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 14 SKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666667777777776666666665543
No 470
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.14 E-value=69 Score=20.80 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHH
Q 009203 29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEA 60 (540)
Q Consensus 29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~ 60 (540)
.+.|...++..+.+...|+.+++.++.++..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555544444444433
No 471
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.04 E-value=51 Score=31.43 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=29.8
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCCCCC
Q 009203 41 KEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQDNVVSSR 84 (540)
Q Consensus 41 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 84 (540)
++.++|+.+...++.++++++.++.+++.++......=|..+++
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 34566777777778888888888888888777665554433333
No 472
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.97 E-value=88 Score=21.97 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=15.9
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 31 ALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 31 ~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
.+...++.++.|...|+.+|++++.++..+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444444443
No 473
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=41.79 E-value=56 Score=26.39 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKL 71 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 71 (540)
++...|.+-.+|...++.+..|++++..++.+|.....+....+..|
T Consensus 119 a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 119 VENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666655555555544444
No 474
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.70 E-value=52 Score=23.79 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=28.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 41 KEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 41 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
.++..|+++|+.++.....+.++++.++.+|.+..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777888888888888888888888888887753
No 475
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.49 E-value=71 Score=20.79 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHH
Q 009203 29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSK 70 (540)
Q Consensus 29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 70 (540)
.++.-+--+++...++.|..++..++.+..+|..++..+...
T Consensus 18 reAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 18 TEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555666666666666666666555554443
No 476
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=41.35 E-value=62 Score=26.61 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
-|++.+.|++.++.+++|++. .+.+|.+.++...+.+..|...
T Consensus 7 ~ee~~e~L~~~e~l~~el~~t---WeeKl~~te~~~~e~~~~l~~~ 49 (184)
T 4egx_A 7 SEEAIERLKETEKIIAELNET---WEEKLRRTEAIRMEREALLAEM 49 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 455666666666666666655 5777777777666666666654
No 477
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.35 E-value=99 Score=23.29 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhh----HHHHHHHHHHHHHHHH
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQR----ISYYKSQLEEAEKRLE 65 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~----~~~~~~~l~~~~~~~~ 65 (540)
+-+.+++.|.+-|+....+++.++.+ +.+|+.++.+|+..+.
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLA 57 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666555543 3344444444444433
No 478
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=41.26 E-value=1.2e+02 Score=23.75 Aligned_cols=52 Identities=13% Similarity=0.314 Sum_probs=36.5
Q ss_pred CChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 23 NSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 23 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
.|+++..|++...|-|.+.++..+..+|..........-..+......+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~~~GSQL~~tn~~Va~nt~~ia~vn~~i~~l 53 (154)
T 2ynz_A 2 KQIEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADINTSITNL 53 (154)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHhccchhhhhhhhhcc
Confidence 4678889999999999999999988887655555554444555555544443
No 479
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.09 E-value=74 Score=23.60 Aligned_cols=40 Identities=10% Similarity=0.266 Sum_probs=25.9
Q ss_pred HhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 36 IEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 36 i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
+...++.++.+...+..++.++..++.++.+++..|...-
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555666677777777777777777776654
No 480
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=40.88 E-value=78 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=11.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHHH
Q 009203 41 KEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 41 ~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
+|++-||.+|..+..++.+++.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~ 36 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLER 36 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665555555554443
No 481
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=40.83 E-value=69 Score=31.26 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=26.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCC
Q 009203 42 EVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQDNVV 81 (540)
Q Consensus 42 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 81 (540)
+.++|+.+...++.++++++.++.+++.++......=|..
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4456666666777777777777777777776655543333
No 482
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.39 E-value=98 Score=24.47 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 009203 35 LIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRC 76 (540)
Q Consensus 35 ~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 76 (540)
.+.....+...+..+..+++.++.+.+..+...+.+|..++.
T Consensus 102 MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 102 MVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555566667777777777777777777654
No 483
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.98 E-value=83 Score=22.23 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=14.0
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 009203 39 RTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKL 71 (540)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 71 (540)
.+.+...|..+++.++.++..+...+.....++
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333
No 484
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.88 E-value=56 Score=21.88 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=9.6
Q ss_pred hhhhHHHHHHhhHHHHHHHHHH
Q 009203 38 HRTKEVQHLRQRISYYKSQLEE 59 (540)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~l~~ 59 (540)
+++.-+..|..++..++.....
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554444444443333
No 485
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.71 E-value=78 Score=23.33 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 009203 35 LIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLA 72 (540)
Q Consensus 35 ~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 72 (540)
.++....++..++.++..++.++.+++..+..++..+.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555444443
No 486
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=39.54 E-value=55 Score=23.26 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 009203 55 SQLEEAEKRL 64 (540)
Q Consensus 55 ~~l~~~~~~~ 64 (540)
.+|.++++.+
T Consensus 59 ~Ki~elkr~l 68 (96)
T 2ic9_A 59 TKLGELKREL 68 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 487
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=39.06 E-value=42 Score=19.67 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHH
Q 009203 37 EHRTKEVQHLRQRISYYKSQLEEAE 61 (540)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~l~~~~ 61 (540)
.+.+.+...|.+.|+.+++.+..++
T Consensus 27 arlendnanlekdianlekdianle 51 (56)
T 3he4_A 27 ARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 488
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.92 E-value=92 Score=21.31 Aligned_cols=38 Identities=11% Similarity=0.261 Sum_probs=16.5
Q ss_pred HhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 009203 36 IEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73 (540)
Q Consensus 36 i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 73 (540)
+.+.+.|..++..++...+..+..++.+++.....+.+
T Consensus 35 v~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~r 72 (81)
T 3qh9_A 35 VEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIER 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHH
Confidence 33344444444444444444444444444444443333
No 489
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.32 E-value=65 Score=23.07 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHHhh----hhhHHHHHHhhHHHH---HHHHHHHHHHHHHhHHHHHHh
Q 009203 24 SKDEQEEALVALIEH----RTKEVQHLRQRISYY---KSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~----~~~~~~~l~~~~~~~---~~~l~~~~~~~~~~~~~l~~~ 74 (540)
|....+..|++.+.. .+.|+++|.++|..+ +.+.+.+..|-.-++.+|..+
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444455544333 333344444443222 333444444444444555443
No 490
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.79 E-value=55 Score=18.43 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=6.0
Q ss_pred HhhHHHHHHHHHHHH
Q 009203 47 RQRISYYKSQLEEAE 61 (540)
Q Consensus 47 ~~~~~~~~~~l~~~~ 61 (540)
|.+|+.++.+|..++
T Consensus 14 keQi~~l~~kl~~Lk 28 (38)
T 2l5g_A 14 KEQILKLEEKLLALQ 28 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444443
No 491
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.49 E-value=44 Score=22.83 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 23 NSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 23 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
++...=...|...|++..+|...+...++.|+.+.++++.
T Consensus 35 ~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 35 EDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=37.26 E-value=1.5e+02 Score=23.89 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=0.0
Q ss_pred ccCCCcchhhhhhcCCCCChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 6 VKKPKQEEEEEEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
+.+..+..+.. .+..+.+.|...|.....--.+|.+.+........++++++..+...+..++
T Consensus 82 f~~e~~~~E~~-------~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 82 FRREGNEKEMQ-------RILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp SSSCCCSSSTT-------TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
No 493
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.01 E-value=58 Score=22.34 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 009203 26 DEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRL 64 (540)
Q Consensus 26 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 64 (540)
....+.+...+..++.|...|+.++.+++.++..+...+
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=36.66 E-value=62 Score=23.68 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203 30 EALVALIEHRTKEVQHLRQRISYYKSQLEEAEK 62 (540)
Q Consensus 30 ~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~ 62 (540)
+--...++.|..++..|+.+|++++.+|.+...
T Consensus 58 evNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 58 ELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.56 E-value=83 Score=21.03 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203 26 DEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQ 68 (540)
Q Consensus 26 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 68 (540)
+..+..|...+...+.+.+.|..+...++.++..+..++..+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 496
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=36.46 E-value=88 Score=20.40 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 28 QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 28 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
|..+|...+..+.+||++|..-+.+++.+|..-..--..++.++...+
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q 51 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 497
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.44 E-value=75 Score=28.84 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 23 NSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 23 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
..+......|...|.+.+..+.....+|..++..++.++.++.+++.++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.40 E-value=98 Score=24.26 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHH
Q 009203 24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSK 70 (540)
Q Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 70 (540)
..+.....+...|+.+.+.++.++-++..++.++..++.++..++..
T Consensus 79 ~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 79 SKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.32 E-value=1e+02 Score=24.02 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203 21 GCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75 (540)
Q Consensus 21 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 75 (540)
+........+.+.+.++...+++++|+..+..++..+...+..+......+....
T Consensus 75 ~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 129 (142)
T 3gp4_A 75 GEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFN 129 (142)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
No 500
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.13 E-value=1.1e+02 Score=26.04 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203 25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL 74 (540)
Q Consensus 25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 74 (540)
+...+.++.+.+..+.+.+++.+.+.....+.|++..+++.++++.-.++
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Done!