BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009204
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 15/77 (19%)
Query: 448 HLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW-------AAEETYQQAM 500
++ +DY +A + A++SDP + + WLVR +++ A+E+++QA+
Sbjct: 18 YMRGQDYRQATASIEDALKSDPKN--------ELAWLVRAEIYQYLKVNDKAQESFRQAL 69
Query: 501 AAEPNSSSYASKYASFL 517
+ +P+S+ + Y FL
Sbjct: 70 SIKPDSAEINNNYGWFL 86
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
DYD A E +++A++ DP +AEA + + + D A E YQ+A+ +PN++
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGN-AYYKQGDYDEAIEYYQKALELDPNNA 77
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
DYD A E +++A++ DP +AEA + + + D A E YQ+A+ +PN++
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGN-AYYKQGDYDEAIEYYQKALELDPNNA 77
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
DYD A E +++A++ DP +AEA + + + D A E YQ+A+ +PN++
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYNLGN-AYYKQGDYDEAIEYYQKALELDPNNA 111
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK 512
++DRA+EC+K A+ D EA Q LV L A+E + + + N S+Y+ +
Sbjct: 215 NFDRAKECYKEALMVDAKCYEAFDQ------LVSNHLLTADEEWD--LVLKLNYSTYSKE 266
Query: 513 YASFL 517
A+FL
Sbjct: 267 DAAFL 271
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
DY +A E +++A++ DP +A+A + + + + D A E YQ+A+ +PN++
Sbjct: 58 DYQKAIEYYQKALELDPNNAKAWYRRGN-AYYKQGDYQKAIEDYQKALELDPNNA 111
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
DY +A E +++A++ DP +A A + + + D A E YQ+A+ +PN++
Sbjct: 24 DYQKAIEYYQKALELDPNNASAWYNLGN-AYYKQGDYQKAIEYYQKALELDPNNA 77
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
DYD A E +++A++ DP AEA + + + D A E YQ+A+ +P S+
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGN-AYYKQGDYDEAIEYYQKALELDPRSA 69
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
DYD A E +++A++ DP AEA + + + D A E YQ+A+ +P S+
Sbjct: 50 DYDEAIEYYQKALELDPRSAEAWYNLGN-AYYKQGDYDEAIEYYQKALELDPRSA 103
Score = 32.0 bits (71), Expect = 0.94, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506
DYD A E +++A++ DP AEA + + + D A E YQ+A+ +P S
Sbjct: 84 DYDEAIEYYQKALELDPRSAEAWYNLGN-AYYKQGDYDEAIEYYQKALELDPRS 136
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 32.0 bits (71), Expect = 0.89, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506
DYD A E +++A++ DP AEA + + + D A E YQ+A+ +P S
Sbjct: 18 DYDEAIEYYQKALELDPRSAEAWYNLGN-AYYKQGDYDEAIEYYQKALELDPRS 70
>pdb|1X9F|B Chain B, Hemoglobin Dodecamer From Lumbricus Erythrocruorin
pdb|1X9F|F Chain F, Hemoglobin Dodecamer From Lumbricus Erythrocruorin
pdb|1X9F|J Chain J, Hemoglobin Dodecamer From Lumbricus Erythrocruorin
pdb|2GTL|B Chain B, Lumbricus Erythrocruorin At 3.5a Resolution
pdb|2GTL|F Chain F, Lumbricus Erythrocruorin At 3.5a Resolution
pdb|2GTL|J Chain J, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 145
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 373 LDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLY 426
LD+ S LD+ ++EE LDH +QH + PD+Y D F+T +L+
Sbjct: 72 LDIAISTLDQPATLKEE-----LDHLQVQHEGRKI-----PDNYFDAFKTAILH 115
>pdb|4HOU|A Chain A, Crystal Structure Of N-terminal Human Ifit1
pdb|4HOU|B Chain B, Crystal Structure Of N-terminal Human Ifit1
Length = 273
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 446 FLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA 479
L K+Y+RA+ CF++ ++ DP + E+ + YA
Sbjct: 143 LLKCGGKNYERAKACFEKVLEVDPENPESSAGYA 176
>pdb|3U7D|A Chain A, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
pdb|3U7D|C Chain C, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
Length = 322
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 512 KYASFLWNTGGEETCFPLSSSQDDYNHIV 540
KY F+W G +TCF + S ++ + IV
Sbjct: 268 KYGCFMWQLGDTDTCFQIHSMENKMSFIV 296
>pdb|4DXA|B Chain B, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 322
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 512 KYASFLWNTGGEETCFPLSSSQDDYNHIV 540
KY F+W G +TCF + S ++ + IV
Sbjct: 268 KYGCFMWQLGDTDTCFQIHSMENKMSFIV 296
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 448 HLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
+L + ++A+ ++A++ DP A+A + A ++ + A+E Y++A+A++ ++
Sbjct: 47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQTEXEPKLADEEYRKALASDSRNA 105
Query: 508 SYASKYASFLWNTGGEETCFP--LSSSQD 534
+ Y FL+ E + L +SQD
Sbjct: 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQD 134
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 448 HLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
+L + ++A+ ++A++ DP A+A + A ++ + A+E Y++A+A++ ++
Sbjct: 60 YLQRGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQTEMEPKLADEEYRKALASDSRNA 118
Query: 508 SYASKYASFLWNTGGEETCFP--LSSSQD 534
+ Y FL+ E + L +SQD
Sbjct: 119 RVLNNYGGFLYEQKRYEEAYQRLLEASQD 147
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 457 AEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506
A+E +++A+ SD +A L+ Y FL+ ++ EE YQ+ + A ++
Sbjct: 103 ADEEYRKALASDSRNARVLNNYGGFLYEQKR----YEEAYQRLLEASQDT 148
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
DYD A E +++A++ P +AEA + + + D A E YQ+A+ PN++
Sbjct: 24 DYDEAIEYYQKALELYPNNAEAWYNLGN-AYYKQGDYDEAIEYYQKALELYPNNA 77
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
DYD A E +++A++ P +AEA + + + D A E YQ+A+ PN++
Sbjct: 58 DYDEAIEYYQKALELYPNNAEAWYNLGN-AYYKQGDYDEAIEYYQKALELYPNNA 111
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 448 HLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFL 482
HL +DYD+AE +AI+ D D +AL + + L
Sbjct: 75 HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,636,502
Number of Sequences: 62578
Number of extensions: 548274
Number of successful extensions: 1314
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 27
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)