Query 009204
Match_columns 540
No_of_seqs 215 out of 1354
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 21:41:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.5 1.8E-13 3.9E-18 124.6 13.4 104 415-520 36-139 (144)
2 PRK10370 formate-dependent nit 99.5 8.4E-13 1.8E-17 126.7 13.6 109 416-525 52-162 (198)
3 KOG4626 O-linked N-acetylgluco 99.5 6E-14 1.3E-18 153.4 6.3 126 394-524 246-371 (966)
4 PRK15359 type III secretion sy 99.4 1.2E-12 2.7E-17 119.1 10.6 98 423-525 13-110 (144)
5 PRK12370 invasion protein regu 99.4 9E-12 2E-16 135.5 15.5 109 415-525 316-424 (553)
6 KOG4626 O-linked N-acetylgluco 99.4 1.8E-12 3.9E-17 142.0 9.4 106 417-524 334-439 (966)
7 COG3063 PilF Tfp pilus assembl 99.3 1.3E-11 2.9E-16 122.7 11.9 105 417-524 83-190 (250)
8 KOG0553 TPR repeat-containing 99.3 1.2E-11 2.7E-16 126.4 12.0 106 417-524 95-200 (304)
9 TIGR02552 LcrH_SycD type III s 99.3 1.9E-11 4.2E-16 106.4 11.2 111 394-509 11-121 (135)
10 PRK12370 invasion protein regu 99.3 2.8E-11 6E-16 131.7 14.1 109 415-525 350-459 (553)
11 TIGR00990 3a0801s09 mitochondr 99.3 3.7E-11 8E-16 131.4 14.5 128 395-527 360-487 (615)
12 PLN03088 SGT1, suppressor of 99.3 6.3E-11 1.4E-15 123.0 14.8 104 416-521 15-118 (356)
13 TIGR00990 3a0801s09 mitochondr 99.3 4.8E-11 1E-15 130.5 14.3 110 415-526 343-452 (615)
14 COG3063 PilF Tfp pilus assembl 99.3 2.7E-11 5.8E-16 120.6 10.5 107 415-524 47-156 (250)
15 PRK11189 lipoprotein NlpI; Pro 99.2 9.1E-11 2E-15 118.2 14.3 92 415-508 76-167 (296)
16 PRK09782 bacteriophage N4 rece 99.2 6.2E-11 1.3E-15 137.8 14.5 107 416-525 589-695 (987)
17 TIGR02521 type_IV_pilW type IV 99.2 2.1E-10 4.5E-15 103.3 13.9 111 415-527 77-189 (234)
18 TIGR02521 type_IV_pilW type IV 99.2 2.3E-10 5.1E-15 103.0 13.8 111 415-527 111-223 (234)
19 KOG1126 DNA-binding cell divis 99.2 2.3E-11 5E-16 133.9 7.4 109 417-527 469-577 (638)
20 PRK15179 Vi polysaccharide bio 99.2 1.4E-10 3E-15 130.6 13.4 109 415-525 98-206 (694)
21 TIGR02552 LcrH_SycD type III s 99.2 2.5E-10 5.3E-15 99.4 12.0 101 424-526 4-104 (135)
22 PF13429 TPR_15: Tetratricopep 99.2 5.6E-11 1.2E-15 116.9 8.2 113 415-529 158-270 (280)
23 PRK15174 Vi polysaccharide exp 99.2 2.4E-10 5.2E-15 127.2 14.0 108 416-525 225-336 (656)
24 PRK11189 lipoprotein NlpI; Pro 99.2 3.7E-10 7.9E-15 113.8 13.4 108 417-526 40-151 (296)
25 PRK10370 formate-dependent nit 99.1 6.2E-10 1.3E-14 107.0 14.0 93 415-508 85-179 (198)
26 TIGR02917 PEP_TPR_lipo putativ 99.1 8.5E-10 1.8E-14 118.4 13.9 108 416-526 783-890 (899)
27 PF13414 TPR_11: TPR repeat; P 99.1 4E-10 8.6E-15 88.6 8.3 68 435-504 1-69 (69)
28 PRK15174 Vi polysaccharide exp 99.1 1.2E-09 2.6E-14 121.7 15.2 108 416-525 259-370 (656)
29 COG5010 TadD Flp pilus assembl 99.1 1.2E-09 2.6E-14 110.0 12.6 116 415-532 112-227 (257)
30 PRK11447 cellulose synthase su 99.1 1.5E-09 3.3E-14 127.5 14.7 111 415-526 363-514 (1157)
31 PRK09782 bacteriophage N4 rece 99.1 7.7E-10 1.7E-14 128.8 12.0 108 415-524 621-728 (987)
32 PRK15363 pathogenicity island 99.1 2.5E-09 5.5E-14 101.1 13.2 112 394-510 28-143 (157)
33 cd00189 TPR Tetratricopeptide 99.0 4.1E-09 8.9E-14 79.7 10.5 88 416-505 13-100 (100)
34 KOG1126 DNA-binding cell divis 99.0 3.3E-10 7.1E-15 124.9 5.8 108 416-525 434-541 (638)
35 PRK10049 pgaA outer membrane p 99.0 6.8E-09 1.5E-13 117.4 16.2 108 415-525 61-168 (765)
36 TIGR02917 PEP_TPR_lipo putativ 99.0 5.4E-09 1.2E-13 112.3 14.2 108 416-525 138-245 (899)
37 PRK15363 pathogenicity island 99.0 2.6E-09 5.7E-14 101.0 10.3 95 429-525 26-121 (157)
38 PRK11447 cellulose synthase su 99.0 4.4E-09 9.6E-14 123.6 13.9 108 416-525 282-403 (1157)
39 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.6E-08 3.5E-13 84.7 12.6 93 416-510 15-113 (119)
40 PF13432 TPR_16: Tetratricopep 98.9 4E-09 8.8E-14 82.3 7.8 64 442-507 2-65 (65)
41 CHL00033 ycf3 photosystem I as 98.9 2.7E-08 5.9E-13 91.4 14.1 105 416-524 48-168 (168)
42 PRK15179 Vi polysaccharide bio 98.9 2.3E-08 4.9E-13 113.0 15.7 97 415-513 132-228 (694)
43 PRK11788 tetratricopeptide rep 98.9 2.1E-08 4.6E-13 101.3 13.1 112 415-528 153-270 (389)
44 PRK11788 tetratricopeptide rep 98.9 2.4E-08 5.1E-13 101.0 13.3 107 416-525 193-300 (389)
45 TIGR03302 OM_YfiO outer membra 98.9 2E-08 4.3E-13 95.7 12.1 109 416-525 46-184 (235)
46 KOG1125 TPR repeat-containing 98.9 4E-09 8.6E-14 115.3 7.6 108 418-527 409-518 (579)
47 PRK02603 photosystem I assembl 98.8 5.1E-08 1.1E-12 90.3 13.5 104 415-523 47-167 (172)
48 cd00189 TPR Tetratricopeptide 98.8 2E-08 4.4E-13 75.9 8.9 86 439-526 2-87 (100)
49 PF13429 TPR_15: Tetratricopep 98.8 1E-08 2.2E-13 101.0 8.1 110 415-526 122-233 (280)
50 KOG1155 Anaphase-promoting com 98.8 2.3E-08 5E-13 107.6 11.2 107 417-525 344-450 (559)
51 KOG1155 Anaphase-promoting com 98.8 2.2E-08 4.8E-13 107.7 10.8 108 417-526 378-485 (559)
52 TIGR03302 OM_YfiO outer membra 98.8 4.9E-08 1.1E-12 93.1 12.1 111 415-527 82-223 (235)
53 PRK10049 pgaA outer membrane p 98.8 6E-08 1.3E-12 109.8 14.5 107 416-525 28-134 (765)
54 KOG0547 Translocase of outer m 98.8 1.7E-08 3.7E-13 109.1 8.8 130 393-526 421-556 (606)
55 KOG1125 TPR repeat-containing 98.8 1.8E-08 3.8E-13 110.3 9.0 123 394-524 427-559 (579)
56 COG4235 Cytochrome c biogenesi 98.8 7.5E-08 1.6E-12 98.8 13.1 108 417-525 136-245 (287)
57 PLN02789 farnesyltranstransfer 98.7 8.5E-08 1.8E-12 99.2 12.3 144 374-522 41-191 (320)
58 PLN03088 SGT1, suppressor of 98.7 5.9E-08 1.3E-12 101.1 11.1 84 440-525 5-88 (356)
59 cd05804 StaR_like StaR_like; a 98.7 1.3E-07 2.7E-12 94.8 12.9 105 418-524 95-203 (355)
60 PF12895 Apc3: Anaphase-promot 98.7 2.5E-08 5.5E-13 82.0 6.5 81 416-499 2-84 (84)
61 CHL00033 ycf3 photosystem I as 98.7 9.7E-08 2.1E-12 87.8 11.0 102 418-521 14-120 (168)
62 COG5010 TadD Flp pilus assembl 98.7 7.1E-08 1.5E-12 97.4 10.9 107 417-525 80-186 (257)
63 TIGR02795 tol_pal_ybgF tol-pal 98.7 1.7E-07 3.8E-12 78.4 10.9 87 437-525 2-94 (119)
64 KOG0548 Molecular co-chaperone 98.7 1.8E-07 3.8E-12 101.9 13.1 122 394-520 352-473 (539)
65 PLN02789 farnesyltranstransfer 98.7 6.4E-07 1.4E-11 92.8 16.6 107 417-525 51-160 (320)
66 PRK10153 DNA-binding transcrip 98.7 1.5E-07 3.3E-12 103.1 12.2 123 413-537 352-490 (517)
67 PF13432 TPR_16: Tetratricopep 98.6 5.9E-08 1.3E-12 75.8 6.2 56 416-472 10-65 (65)
68 PRK02603 photosystem I assembl 98.6 5E-07 1.1E-11 83.8 12.8 89 433-523 31-122 (172)
69 PRK11906 transcriptional regul 98.6 4.2E-07 9E-12 98.2 12.6 107 417-524 272-389 (458)
70 COG4783 Putative Zn-dependent 98.6 4.7E-07 1E-11 97.9 12.8 109 414-524 317-425 (484)
71 KOG2076 RNA polymerase III tra 98.6 5.2E-07 1.1E-11 102.8 13.5 134 394-533 134-274 (895)
72 TIGR00540 hemY_coli hemY prote 98.6 4.8E-07 1E-11 95.0 11.7 106 415-525 275-388 (409)
73 PF14559 TPR_19: Tetratricopep 98.5 2.1E-07 4.5E-12 72.8 6.8 61 451-512 4-64 (68)
74 cd05804 StaR_like StaR_like; a 98.5 5.2E-07 1.1E-11 90.4 11.0 108 416-525 56-166 (355)
75 PF14559 TPR_19: Tetratricopep 98.5 2.2E-07 4.7E-12 72.7 6.5 63 416-479 4-66 (68)
76 PF13414 TPR_11: TPR repeat; P 98.5 1.6E-07 3.5E-12 73.7 5.8 53 416-469 16-69 (69)
77 PRK14574 hmsH outer membrane p 98.5 6.8E-07 1.5E-11 102.9 12.7 108 415-524 46-153 (822)
78 KOG0547 Translocase of outer m 98.5 3.4E-07 7.4E-12 99.3 9.1 106 417-524 374-479 (606)
79 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.5E-07 9.7E-12 97.9 10.0 69 432-502 70-141 (453)
80 PF06552 TOM20_plant: Plant sp 98.5 1E-06 2.2E-11 85.5 11.3 96 419-515 7-122 (186)
81 PF13371 TPR_9: Tetratricopept 98.5 7.5E-07 1.6E-11 70.5 8.7 67 445-513 3-69 (73)
82 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.8E-06 3.9E-11 92.2 14.1 116 417-537 183-304 (395)
83 PRK10153 DNA-binding transcrip 98.5 1.4E-06 3.1E-11 95.6 13.4 90 417-509 398-489 (517)
84 PRK10803 tol-pal system protei 98.5 2.6E-06 5.7E-11 86.2 14.3 92 417-510 157-254 (263)
85 PRK11906 transcriptional regul 98.5 1.2E-06 2.7E-11 94.7 12.5 114 394-509 289-408 (458)
86 KOG1173 Anaphase-promoting com 98.4 7.8E-07 1.7E-11 97.7 9.1 100 416-517 427-533 (611)
87 TIGR00540 hemY_coli hemY prote 98.4 3.7E-06 8.1E-11 88.4 13.5 108 416-525 97-205 (409)
88 PRK10747 putative protoheme IX 98.4 4.1E-06 8.9E-11 88.0 13.1 105 415-525 275-379 (398)
89 COG4235 Cytochrome c biogenesi 98.4 5.4E-06 1.2E-10 85.3 13.2 94 415-509 168-263 (287)
90 PF09976 TPR_21: Tetratricopep 98.3 7.7E-06 1.7E-10 74.0 12.4 108 416-526 24-137 (145)
91 PF13371 TPR_9: Tetratricopept 98.3 2.7E-06 5.9E-11 67.3 8.1 63 416-479 8-70 (73)
92 KOG0543 FKBP-type peptidyl-pro 98.3 3.8E-06 8.3E-11 89.4 11.6 105 416-522 221-340 (397)
93 PRK14574 hmsH outer membrane p 98.3 5.9E-06 1.3E-10 95.3 13.7 107 415-524 114-220 (822)
94 PRK15331 chaperone protein Sic 98.3 1.2E-05 2.5E-10 77.1 13.0 114 393-512 30-143 (165)
95 KOG0548 Molecular co-chaperone 98.3 3.8E-06 8.3E-11 91.8 10.8 100 416-517 15-114 (539)
96 KOG1840 Kinesin light chain [C 98.3 2.2E-06 4.7E-11 94.2 8.8 112 415-528 253-388 (508)
97 KOG1129 TPR repeat-containing 98.3 2.9E-06 6.3E-11 89.0 9.0 107 417-525 338-447 (478)
98 KOG0553 TPR repeat-containing 98.3 2E-06 4.4E-11 88.6 7.7 80 444-525 88-167 (304)
99 PF12688 TPR_5: Tetratrico pep 98.3 7.8E-06 1.7E-10 74.0 10.7 88 413-502 11-104 (120)
100 KOG4162 Predicted calmodulin-b 98.3 3.3E-06 7.3E-11 95.2 9.9 106 417-524 664-771 (799)
101 KOG1840 Kinesin light chain [C 98.2 7.7E-06 1.7E-10 89.9 12.2 149 371-529 301-472 (508)
102 KOG4162 Predicted calmodulin-b 98.2 6E-06 1.3E-10 93.3 11.5 133 371-508 648-789 (799)
103 KOG2003 TPR repeat-containing 98.2 4.7E-06 1E-10 90.2 10.2 107 417-525 504-610 (840)
104 KOG2002 TPR-containing nuclear 98.2 5.2E-06 1.1E-10 95.6 10.9 129 394-524 227-359 (1018)
105 PRK10747 putative protoheme IX 98.2 1.3E-05 2.9E-10 84.2 13.2 89 416-506 131-220 (398)
106 PF12895 Apc3: Anaphase-promot 98.2 1.1E-06 2.4E-11 72.3 3.9 75 451-527 2-78 (84)
107 KOG1173 Anaphase-promoting com 98.2 1.2E-05 2.7E-10 88.5 12.9 55 417-472 469-523 (611)
108 PF13424 TPR_12: Tetratricopep 98.2 2.4E-06 5.3E-11 68.7 4.6 65 436-502 4-75 (78)
109 PRK10803 tol-pal system protei 98.1 2.5E-05 5.3E-10 79.2 12.0 89 436-525 141-235 (263)
110 KOG1128 Uncharacterized conser 98.1 6.3E-06 1.4E-10 92.7 7.6 108 416-525 498-605 (777)
111 KOG3060 Uncharacterized conser 98.1 3.1E-05 6.7E-10 79.0 11.8 105 417-523 100-204 (289)
112 KOG2003 TPR repeat-containing 98.1 2.6E-05 5.7E-10 84.6 11.2 113 413-527 534-680 (840)
113 PF12688 TPR_5: Tetratrico pep 98.1 6.3E-05 1.4E-09 68.2 12.0 87 438-526 2-94 (120)
114 PRK15331 chaperone protein Sic 98.0 1.5E-05 3.2E-10 76.4 7.6 92 432-525 32-123 (165)
115 KOG3060 Uncharacterized conser 98.0 0.00011 2.3E-09 75.2 13.0 97 417-514 134-232 (289)
116 KOG4648 Uncharacterized conser 98.0 2.1E-05 4.5E-10 83.2 8.2 100 415-516 109-208 (536)
117 KOG2002 TPR-containing nuclear 97.9 5.7E-05 1.2E-09 87.3 11.2 100 417-517 321-424 (1018)
118 PRK14720 transcript cleavage f 97.9 8.9E-05 1.9E-09 86.3 12.8 107 414-524 127-272 (906)
119 PRK14720 transcript cleavage f 97.9 4.6E-05 1E-09 88.6 10.4 101 416-520 44-163 (906)
120 KOG1156 N-terminal acetyltrans 97.9 4E-05 8.7E-10 85.6 9.2 159 368-529 3-165 (700)
121 KOG1128 Uncharacterized conser 97.9 1.9E-05 4.2E-10 88.9 6.5 102 425-528 472-574 (777)
122 PF13428 TPR_14: Tetratricopep 97.9 2.8E-05 6E-10 57.7 5.2 41 438-479 2-42 (44)
123 PF09976 TPR_21: Tetratricopep 97.9 9.6E-05 2.1E-09 66.9 9.5 83 415-500 60-145 (145)
124 KOG0550 Molecular chaperone (D 97.8 3.9E-05 8.5E-10 82.4 7.9 109 415-525 181-305 (486)
125 COG2956 Predicted N-acetylgluc 97.8 0.00017 3.6E-09 75.9 12.2 122 396-525 140-267 (389)
126 COG4700 Uncharacterized protei 97.8 0.00015 3.4E-09 71.7 11.2 107 416-525 102-211 (251)
127 COG4783 Putative Zn-dependent 97.8 0.00026 5.7E-09 77.1 13.6 87 416-504 353-439 (484)
128 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 3.9E-05 8.4E-10 83.2 7.0 58 467-525 70-130 (453)
129 KOG1156 N-terminal acetyltrans 97.8 7.4E-05 1.6E-09 83.5 9.1 106 417-524 21-126 (700)
130 PRK10866 outer membrane biogen 97.8 0.00034 7.3E-09 69.8 12.6 108 416-524 45-192 (243)
131 PF13431 TPR_17: Tetratricopep 97.7 3.2E-05 6.8E-10 55.4 3.2 31 461-492 2-32 (34)
132 PF13431 TPR_17: Tetratricopep 97.7 3.4E-05 7.3E-10 55.2 3.2 34 425-459 1-34 (34)
133 KOG2076 RNA polymerase III tra 97.7 0.00051 1.1E-08 79.1 13.8 108 414-523 184-296 (895)
134 KOG0550 Molecular chaperone (D 97.7 0.00016 3.5E-09 77.8 9.3 108 415-524 261-374 (486)
135 PF13428 TPR_14: Tetratricopep 97.7 9.4E-05 2E-09 54.9 5.3 43 472-515 1-43 (44)
136 KOG1129 TPR repeat-containing 97.6 0.00012 2.6E-09 77.3 7.5 114 417-532 304-423 (478)
137 PF04733 Coatomer_E: Coatomer 97.6 0.00033 7.1E-09 71.8 9.6 89 418-508 182-271 (290)
138 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0022 4.8E-08 53.8 12.7 104 416-521 143-250 (291)
139 KOG1127 TPR repeat-containing 97.5 0.00044 9.6E-09 80.5 10.8 109 417-526 472-615 (1238)
140 KOG1127 TPR repeat-containing 97.5 0.00015 3.2E-09 84.2 6.9 150 372-525 459-648 (1238)
141 COG1729 Uncharacterized protei 97.5 0.0011 2.3E-08 68.0 12.1 94 416-511 154-253 (262)
142 PF12569 NARP1: NMDA receptor- 97.5 0.0018 3.9E-08 71.7 14.8 151 370-526 3-247 (517)
143 KOG0624 dsRNA-activated protei 97.5 0.00013 2.8E-09 77.4 5.6 98 417-516 52-152 (504)
144 KOG1174 Anaphase-promoting com 97.5 0.00039 8.5E-09 75.1 9.2 109 417-526 246-387 (564)
145 PF04733 Coatomer_E: Coatomer 97.5 0.0003 6.5E-09 72.1 8.0 106 416-523 144-251 (290)
146 KOG4642 Chaperone-dependent E3 97.5 0.00036 7.7E-09 71.0 8.1 84 417-502 24-107 (284)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.00074 1.6E-08 72.5 10.9 82 417-500 214-295 (395)
148 KOG4555 TPR repeat-containing 97.5 0.001 2.2E-08 63.0 10.3 89 416-506 56-148 (175)
149 KOG4234 TPR repeat-containing 97.4 0.0012 2.5E-08 66.2 11.0 96 417-514 109-209 (271)
150 KOG0543 FKBP-type peptidyl-pro 97.4 0.0007 1.5E-08 72.6 10.1 89 415-504 269-357 (397)
151 PF13525 YfiO: Outer membrane 97.4 0.0013 2.8E-08 63.3 10.5 108 416-524 18-158 (203)
152 COG4785 NlpI Lipoprotein NlpI, 97.4 0.0004 8.7E-09 70.1 7.1 95 413-509 75-169 (297)
153 KOG0624 dsRNA-activated protei 97.4 0.00068 1.5E-08 72.1 8.8 92 433-526 34-125 (504)
154 PF07719 TPR_2: Tetratricopept 97.4 0.00044 9.6E-09 47.3 5.0 33 438-471 2-34 (34)
155 PF13512 TPR_18: Tetratricopep 97.3 0.0019 4.1E-08 60.8 10.7 93 416-510 23-136 (142)
156 PF00515 TPR_1: Tetratricopept 97.3 0.00032 7E-09 48.5 4.3 32 438-470 2-33 (34)
157 KOG4555 TPR repeat-containing 97.3 0.0011 2.3E-08 62.8 8.9 81 444-526 50-134 (175)
158 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00026 5.7E-09 71.4 5.2 97 439-537 67-169 (297)
159 PRK10866 outer membrane biogen 97.3 0.0022 4.7E-08 64.1 11.1 85 435-521 30-120 (243)
160 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0087 1.9E-07 50.2 12.8 88 416-505 180-268 (291)
161 PF13424 TPR_12: Tetratricopep 97.2 0.00025 5.3E-09 57.1 3.2 52 415-467 17-75 (78)
162 PF05843 Suf: Suppressor of fo 97.2 0.0019 4.2E-08 65.4 10.2 99 409-509 42-143 (280)
163 COG2956 Predicted N-acetylgluc 97.2 0.0026 5.7E-08 67.1 11.3 92 416-509 193-285 (389)
164 COG1729 Uncharacterized protei 97.2 0.0011 2.3E-08 67.9 8.2 95 440-536 144-245 (262)
165 PF12569 NARP1: NMDA receptor- 97.2 0.002 4.3E-08 71.4 10.5 85 439-525 196-280 (517)
166 PF06552 TOM20_plant: Plant sp 97.2 0.0011 2.4E-08 64.8 7.4 69 454-522 7-84 (186)
167 PF07719 TPR_2: Tetratricopept 97.2 0.001 2.2E-08 45.4 5.2 34 472-506 1-34 (34)
168 KOG0376 Serine-threonine phosp 97.1 0.00051 1.1E-08 74.9 5.3 104 417-522 18-121 (476)
169 KOG0495 HAT repeat protein [RN 97.1 0.0024 5.2E-08 72.3 10.4 106 417-524 665-770 (913)
170 KOG1174 Anaphase-promoting com 97.1 0.0018 3.9E-08 70.2 9.1 99 414-514 311-409 (564)
171 KOG2396 HAT (Half-A-TPR) repea 97.1 0.0037 8E-08 68.9 11.4 97 418-515 86-182 (568)
172 KOG3824 Huntingtin interacting 97.1 0.00068 1.5E-08 71.3 5.0 66 414-480 127-192 (472)
173 PLN03077 Protein ECB2; Provisi 97.0 0.0039 8.4E-08 71.5 11.4 106 415-525 601-709 (857)
174 PF00515 TPR_1: Tetratricopept 97.0 0.0012 2.5E-08 45.7 4.5 34 472-506 1-34 (34)
175 KOG0495 HAT repeat protein [RN 97.0 0.0064 1.4E-07 68.9 12.3 107 415-524 596-702 (913)
176 PF05843 Suf: Suppressor of fo 97.0 0.0025 5.5E-08 64.6 8.4 109 417-526 15-126 (280)
177 COG3071 HemY Uncharacterized e 97.0 0.0057 1.2E-07 65.7 11.3 105 415-525 275-379 (400)
178 COG3071 HemY Uncharacterized e 96.9 0.0076 1.6E-07 64.7 11.2 85 415-502 306-390 (400)
179 KOG3824 Huntingtin interacting 96.9 0.0027 5.9E-08 66.9 7.6 71 443-515 122-192 (472)
180 PRK04841 transcriptional regul 96.9 0.0095 2.1E-07 67.9 12.5 110 415-526 464-592 (903)
181 PF13525 YfiO: Outer membrane 96.8 0.011 2.4E-07 56.9 10.8 83 436-520 4-92 (203)
182 KOG0545 Aryl-hydrocarbon recep 96.8 0.0067 1.5E-07 62.4 9.1 93 415-509 190-300 (329)
183 PF14938 SNAP: Soluble NSF att 96.7 0.0053 1.2E-07 61.9 8.3 73 451-524 87-172 (282)
184 PLN03081 pentatricopeptide (PP 96.7 0.0079 1.7E-07 67.6 10.0 108 415-526 438-547 (697)
185 PRK04841 transcriptional regul 96.6 0.013 2.8E-07 66.9 11.2 110 415-526 503-631 (903)
186 PF13512 TPR_18: Tetratricopep 96.5 0.024 5.2E-07 53.5 10.6 84 437-522 10-99 (142)
187 PF04184 ST7: ST7 protein; In 96.5 0.012 2.6E-07 65.1 9.8 71 443-515 265-338 (539)
188 PF14938 SNAP: Soluble NSF att 96.5 0.011 2.4E-07 59.6 8.5 105 417-523 88-212 (282)
189 COG4700 Uncharacterized protei 96.4 0.031 6.6E-07 55.9 11.1 103 419-524 72-177 (251)
190 COG3118 Thioredoxin domain-con 96.4 0.016 3.5E-07 60.4 9.5 108 416-527 147-256 (304)
191 PF13281 DUF4071: Domain of un 96.4 0.048 1E-06 58.6 13.3 122 394-523 138-275 (374)
192 PF13181 TPR_8: Tetratricopept 96.4 0.0057 1.2E-07 42.0 4.1 30 439-469 3-32 (34)
193 PLN03218 maturation of RBCL 1; 96.4 0.044 9.6E-07 65.6 14.1 105 417-524 593-701 (1060)
194 KOG4507 Uncharacterized conser 96.4 0.015 3.3E-07 65.4 9.4 110 407-518 611-721 (886)
195 PLN03218 maturation of RBCL 1; 96.2 0.053 1.2E-06 65.0 13.8 107 416-526 555-668 (1060)
196 KOG1308 Hsp70-interacting prot 96.2 0.003 6.5E-08 67.0 3.0 89 416-506 127-215 (377)
197 KOG3081 Vesicle coat complex C 96.2 0.044 9.6E-07 56.8 11.0 92 417-509 187-278 (299)
198 PLN03081 pentatricopeptide (PP 96.1 0.02 4.3E-07 64.4 9.1 106 416-527 373-482 (697)
199 PF13181 TPR_8: Tetratricopept 96.1 0.01 2.2E-07 40.7 4.3 34 472-506 1-34 (34)
200 PF10300 DUF3808: Protein of u 96.1 0.044 9.6E-07 59.9 11.0 106 416-523 246-356 (468)
201 KOG4648 Uncharacterized conser 96.0 0.0071 1.5E-07 64.6 4.6 81 442-524 102-182 (536)
202 PF03704 BTAD: Bacterial trans 95.9 0.061 1.3E-06 48.2 9.4 62 438-501 63-124 (146)
203 KOG4340 Uncharacterized conser 95.8 0.064 1.4E-06 56.8 10.5 108 417-526 58-197 (459)
204 KOG4642 Chaperone-dependent E3 95.8 0.014 3.1E-07 59.7 5.5 80 444-525 17-96 (284)
205 KOG2053 Mitochondrial inherita 95.7 0.064 1.4E-06 62.6 10.8 103 417-522 23-125 (932)
206 PLN03077 Protein ECB2; Provisi 95.7 0.066 1.4E-06 61.6 10.8 104 416-526 537-644 (857)
207 KOG2796 Uncharacterized conser 95.6 0.037 8.1E-07 57.6 7.8 105 417-523 191-302 (366)
208 smart00028 TPR Tetratricopepti 95.6 0.02 4.3E-07 35.6 3.8 31 439-470 3-33 (34)
209 COG0790 FOG: TPR repeat, SEL1 95.6 0.23 4.9E-06 49.5 13.0 98 417-521 127-236 (292)
210 KOG1070 rRNA processing protei 95.5 0.079 1.7E-06 64.3 11.0 106 416-523 1543-1650(1710)
211 COG5191 Uncharacterized conser 95.5 0.021 4.5E-07 60.5 5.4 90 425-515 95-184 (435)
212 PF13176 TPR_7: Tetratricopept 95.3 0.027 5.9E-07 40.2 4.0 28 439-467 1-28 (36)
213 PF08424 NRDE-2: NRDE-2, neces 95.3 0.34 7.4E-06 50.4 13.5 96 423-519 5-111 (321)
214 KOG3081 Vesicle coat complex C 95.2 0.19 4.1E-06 52.3 11.3 105 417-524 151-258 (299)
215 COG3914 Spy Predicted O-linked 95.1 0.19 4E-06 56.8 11.7 102 414-516 78-185 (620)
216 PF04184 ST7: ST7 protein; In 95.1 0.64 1.4E-05 51.9 15.5 105 417-525 182-313 (539)
217 KOG2376 Signal recognition par 95.0 0.097 2.1E-06 59.0 9.1 62 442-508 84-145 (652)
218 COG4976 Predicted methyltransf 94.9 0.041 9E-07 56.2 5.5 55 451-506 8-62 (287)
219 KOG1915 Cell cycle control pro 94.9 0.18 3.9E-06 56.1 10.5 100 416-518 450-551 (677)
220 KOG2376 Signal recognition par 94.8 0.28 6.1E-06 55.5 12.0 105 417-526 93-243 (652)
221 KOG1130 Predicted G-alpha GTPa 94.8 0.061 1.3E-06 58.8 6.5 108 416-525 208-333 (639)
222 PF03704 BTAD: Bacterial trans 94.8 0.32 7E-06 43.6 10.3 51 474-525 64-114 (146)
223 PF14561 TPR_20: Tetratricopep 94.8 0.38 8.3E-06 41.6 10.3 48 423-471 8-55 (90)
224 KOG4234 TPR repeat-containing 94.8 0.1 2.2E-06 52.7 7.6 81 444-526 102-187 (271)
225 KOG2610 Uncharacterized conser 94.7 0.2 4.2E-06 53.9 9.9 107 417-525 117-227 (491)
226 PF13281 DUF4071: Domain of un 94.6 0.7 1.5E-05 49.9 14.0 106 372-482 153-269 (374)
227 PF13174 TPR_6: Tetratricopept 94.4 0.072 1.6E-06 35.8 4.1 31 439-470 2-32 (33)
228 smart00028 TPR Tetratricopepti 94.4 0.066 1.4E-06 33.2 3.7 33 473-506 2-34 (34)
229 KOG1915 Cell cycle control pro 94.4 0.26 5.6E-06 54.9 10.2 106 417-525 380-489 (677)
230 COG4105 ComL DNA uptake lipopr 94.4 0.52 1.1E-05 48.5 11.8 92 416-508 47-151 (254)
231 KOG1130 Predicted G-alpha GTPa 94.1 0.087 1.9E-06 57.7 5.9 107 415-523 29-151 (639)
232 KOG0376 Serine-threonine phosp 94.1 0.023 4.9E-07 62.5 1.5 79 444-524 11-89 (476)
233 KOG1941 Acetylcholine receptor 94.0 0.12 2.6E-06 55.9 6.7 111 417-529 136-268 (518)
234 PF10373 EST1_DNA_bind: Est1 D 94.0 0.16 3.4E-06 49.8 7.2 60 422-482 1-60 (278)
235 PF02259 FAT: FAT domain; Int 94.0 0.71 1.5E-05 46.4 11.9 110 413-523 156-308 (352)
236 KOG0551 Hsp90 co-chaperone CNS 93.9 0.19 4.2E-06 53.6 7.9 87 417-505 95-185 (390)
237 PF10373 EST1_DNA_bind: Est1 D 93.9 0.17 3.6E-06 49.6 7.0 62 457-519 1-62 (278)
238 PF14561 TPR_20: Tetratricopep 93.8 0.28 6E-06 42.5 7.4 65 457-522 7-73 (90)
239 PF13174 TPR_6: Tetratricopept 93.6 0.14 3.1E-06 34.3 4.3 33 473-506 1-33 (33)
240 PF13176 TPR_7: Tetratricopept 93.6 0.13 2.9E-06 36.6 4.3 32 474-506 1-34 (36)
241 COG0790 FOG: TPR repeat, SEL1 93.6 1.1 2.4E-05 44.5 12.3 99 417-519 91-199 (292)
242 PF08424 NRDE-2: NRDE-2, neces 93.5 1.3 2.8E-05 46.1 13.1 107 417-524 45-171 (321)
243 PF09613 HrpB1_HrpK: Bacterial 93.4 0.9 1.9E-05 43.9 10.9 100 416-519 23-122 (160)
244 KOG3785 Uncharacterized conser 93.4 0.33 7.2E-06 52.5 8.6 106 416-524 70-202 (557)
245 PF09986 DUF2225: Uncharacteri 93.4 1.9 4.1E-05 42.9 13.5 101 417-519 91-212 (214)
246 PF14853 Fis1_TPR_C: Fis1 C-te 93.3 0.31 6.7E-06 38.7 6.3 38 439-477 3-40 (53)
247 PF13374 TPR_10: Tetratricopep 93.2 0.18 4E-06 35.3 4.5 29 438-467 3-31 (42)
248 COG4105 ComL DNA uptake lipopr 93.0 0.58 1.3E-05 48.2 9.3 71 437-509 34-107 (254)
249 KOG1550 Extracellular protein 92.7 1.2 2.7E-05 49.7 12.3 102 418-525 308-415 (552)
250 PRK10941 hypothetical protein; 92.6 0.82 1.8E-05 47.1 10.0 68 441-510 185-252 (269)
251 KOG2796 Uncharacterized conser 92.5 0.54 1.2E-05 49.3 8.5 92 415-508 224-321 (366)
252 KOG2610 Uncharacterized conser 92.0 0.63 1.4E-05 50.2 8.5 111 370-498 120-234 (491)
253 COG4976 Predicted methyltransf 91.9 0.27 5.8E-06 50.6 5.3 58 415-473 7-64 (287)
254 PF09613 HrpB1_HrpK: Bacterial 91.9 4.7 0.0001 39.0 13.5 81 442-524 15-95 (160)
255 PF13374 TPR_10: Tetratricopep 91.5 0.44 9.6E-06 33.3 4.7 30 472-502 2-31 (42)
256 COG3914 Spy Predicted O-linked 91.3 0.89 1.9E-05 51.6 9.1 104 420-524 48-159 (620)
257 KOG1070 rRNA processing protei 91.2 2 4.3E-05 53.0 12.2 94 417-512 1578-1675(1710)
258 KOG2471 TPR repeat-containing 91.1 0.35 7.6E-06 54.0 5.6 100 417-518 254-380 (696)
259 KOG2047 mRNA splicing factor [ 91.1 1.6 3.4E-05 50.4 10.7 103 415-518 489-597 (835)
260 PF11207 DUF2989: Protein of u 90.9 2.7 6E-05 42.1 11.1 75 452-529 121-200 (203)
261 PF10300 DUF3808: Protein of u 90.5 1.3 2.7E-05 48.8 9.3 87 416-503 280-377 (468)
262 KOG1550 Extracellular protein 90.5 1.9 4.1E-05 48.3 10.8 98 416-519 262-372 (552)
263 KOG0551 Hsp90 co-chaperone CNS 90.4 0.52 1.1E-05 50.5 6.0 85 440-526 84-172 (390)
264 KOG0530 Protein farnesyltransf 90.3 2.4 5.3E-05 44.4 10.5 107 417-524 57-164 (318)
265 KOG1941 Acetylcholine receptor 90.2 0.77 1.7E-05 49.9 7.1 107 416-524 96-223 (518)
266 KOG2053 Mitochondrial inherita 90.1 2.5 5.5E-05 50.0 11.5 110 415-527 55-165 (932)
267 KOG1310 WD40 repeat protein [G 89.9 0.91 2E-05 51.3 7.5 90 417-507 388-479 (758)
268 KOG0545 Aryl-hydrocarbon recep 89.6 1.3 2.8E-05 46.2 7.8 81 439-521 180-278 (329)
269 PF04781 DUF627: Protein of un 89.4 1.1 2.5E-05 40.8 6.5 86 415-501 8-106 (111)
270 PF14853 Fis1_TPR_C: Fis1 C-te 89.3 1.2 2.5E-05 35.5 5.8 37 474-511 3-39 (53)
271 KOG4340 Uncharacterized conser 89.3 0.89 1.9E-05 48.5 6.6 83 417-501 24-106 (459)
272 PRK10941 hypothetical protein; 88.9 1.5 3.2E-05 45.3 7.7 62 414-476 192-253 (269)
273 KOG3785 Uncharacterized conser 88.5 0.83 1.8E-05 49.6 5.8 95 417-517 36-134 (557)
274 KOG1308 Hsp70-interacting prot 88.2 0.23 5E-06 53.1 1.5 74 450-524 126-199 (377)
275 PF04910 Tcf25: Transcriptiona 88.2 7.6 0.00017 41.5 12.8 78 430-509 33-140 (360)
276 KOG1258 mRNA processing protei 88.2 6.2 0.00013 45.0 12.5 108 415-523 378-491 (577)
277 KOG2396 HAT (Half-A-TPR) repea 88.1 8.8 0.00019 43.3 13.4 65 417-481 119-183 (568)
278 COG2976 Uncharacterized protei 87.9 2.6 5.6E-05 42.3 8.4 89 415-507 101-193 (207)
279 COG3898 Uncharacterized membra 87.6 5.4 0.00012 44.0 11.2 125 396-523 149-279 (531)
280 KOG1585 Protein required for f 87.5 3.6 7.8E-05 43.0 9.4 107 416-525 44-168 (308)
281 smart00386 HAT HAT (Half-A-TPR 87.4 1.4 3E-05 29.0 4.4 28 453-480 2-29 (33)
282 KOG3364 Membrane protein invol 87.4 3.9 8.4E-05 39.1 8.8 75 436-511 31-109 (149)
283 TIGR02561 HrpB1_HrpK type III 87.1 5.4 0.00012 38.4 9.8 72 416-489 23-94 (153)
284 smart00386 HAT HAT (Half-A-TPR 86.9 1.6 3.4E-05 28.7 4.5 29 488-516 2-30 (33)
285 KOG2471 TPR repeat-containing 86.7 0.99 2.2E-05 50.6 5.2 105 419-525 222-353 (696)
286 PF12862 Apc5: Anaphase-promot 86.7 5 0.00011 34.4 8.6 53 451-504 11-72 (94)
287 KOG4507 Uncharacterized conser 86.7 1.4 2.9E-05 50.5 6.3 102 421-524 197-300 (886)
288 KOG3617 WD40 and TPR repeat-co 86.0 3.7 8E-05 48.7 9.4 62 438-501 859-940 (1416)
289 PF04781 DUF627: Protein of un 85.5 3.3 7.1E-05 37.9 7.1 80 444-524 3-95 (111)
290 KOG1258 mRNA processing protei 85.4 8.9 0.00019 43.8 11.8 129 394-527 291-420 (577)
291 PF02259 FAT: FAT domain; Int 85.3 9 0.0002 38.5 11.0 68 438-506 253-342 (352)
292 KOG3617 WD40 and TPR repeat-co 84.9 4.5 9.7E-05 48.1 9.4 83 417-501 872-995 (1416)
293 KOG1586 Protein required for f 84.3 7 0.00015 40.6 9.6 93 415-508 85-189 (288)
294 PF08631 SPO22: Meiosis protei 84.2 13 0.00029 37.7 11.6 95 415-510 5-124 (278)
295 COG3898 Uncharacterized membra 82.4 23 0.00049 39.4 12.9 101 417-524 243-346 (531)
296 KOG1310 WD40 repeat protein [G 81.7 2.2 4.8E-05 48.4 5.2 75 451-525 387-463 (758)
297 PF11207 DUF2989: Protein of u 81.5 5.8 0.00013 39.8 7.6 72 420-494 123-199 (203)
298 COG4455 ImpE Protein of avirul 81.4 19 0.00041 37.3 11.3 99 416-515 14-129 (273)
299 PF00244 14-3-3: 14-3-3 protei 80.6 5.3 0.00011 40.2 7.1 48 419-466 142-197 (236)
300 PF12862 Apc5: Anaphase-promot 80.4 12 0.00027 31.9 8.4 54 415-469 10-72 (94)
301 PF07720 TPR_3: Tetratricopept 79.8 4.9 0.00011 29.5 4.9 30 440-470 4-35 (36)
302 PF12968 DUF3856: Domain of Un 79.5 13 0.00028 35.2 8.7 83 417-501 23-128 (144)
303 PF07721 TPR_4: Tetratricopept 78.4 2.5 5.4E-05 28.3 2.8 23 439-462 3-25 (26)
304 KOG3364 Membrane protein invol 78.0 4.2 9.2E-05 38.9 5.1 68 408-476 40-109 (149)
305 KOG2047 mRNA splicing factor [ 77.8 14 0.00031 43.0 10.0 104 417-525 82-187 (835)
306 KOG0530 Protein farnesyltransf 76.2 18 0.00039 38.3 9.5 90 417-524 40-129 (318)
307 COG5191 Uncharacterized conser 75.8 2.7 5.8E-05 45.2 3.5 64 418-481 122-185 (435)
308 PF07079 DUF1347: Protein of u 75.7 9.1 0.0002 42.9 7.6 71 444-518 469-539 (549)
309 KOG2300 Uncharacterized conser 75.7 18 0.00039 41.0 9.9 107 417-523 23-143 (629)
310 KOG0529 Protein geranylgeranyl 75.4 32 0.0007 38.0 11.6 102 418-519 90-195 (421)
311 PF11846 DUF3366: Domain of un 75.1 9.4 0.0002 36.4 6.8 53 415-469 123-175 (193)
312 PF00244 14-3-3: 14-3-3 protei 74.9 9.7 0.00021 38.4 7.1 48 455-502 143-198 (236)
313 KOG1914 mRNA cleavage and poly 73.9 32 0.00069 39.5 11.3 105 419-524 347-452 (656)
314 smart00101 14_3_3 14-3-3 homol 73.7 11 0.00023 38.7 7.1 48 419-466 144-199 (244)
315 PF10602 RPN7: 26S proteasome 73.4 24 0.00051 34.0 9.1 86 438-525 37-131 (177)
316 PF07720 TPR_3: Tetratricopept 73.3 10 0.00023 27.8 5.1 33 473-506 2-36 (36)
317 KOG1586 Protein required for f 72.5 29 0.00062 36.3 9.8 93 416-509 127-231 (288)
318 PF07721 TPR_4: Tetratricopept 72.5 4.5 9.7E-05 27.0 2.8 25 473-498 2-26 (26)
319 COG3629 DnrI DNA-binding trans 72.4 30 0.00065 36.3 10.1 81 417-501 135-215 (280)
320 KOG0128 RNA-binding protein SA 72.3 41 0.00088 40.2 12.0 105 417-523 93-199 (881)
321 COG2912 Uncharacterized conser 71.2 26 0.00057 36.6 9.3 60 450-510 193-252 (269)
322 PF08631 SPO22: Meiosis protei 70.4 20 0.00043 36.4 8.2 74 450-524 5-101 (278)
323 TIGR02561 HrpB1_HrpK type III 70.3 26 0.00056 33.9 8.4 73 451-524 23-95 (153)
324 smart00101 14_3_3 14-3-3 homol 68.8 16 0.00036 37.4 7.2 48 454-501 144-199 (244)
325 KOG1585 Protein required for f 67.7 39 0.00084 35.6 9.6 21 447-467 40-60 (308)
326 PF04910 Tcf25: Transcriptiona 66.5 37 0.00081 36.4 9.7 91 415-509 115-229 (360)
327 PF11846 DUF3366: Domain of un 65.8 28 0.0006 33.2 7.8 51 455-507 128-178 (193)
328 KOG4814 Uncharacterized conser 65.0 38 0.00083 39.7 9.7 85 416-502 367-457 (872)
329 KOG0529 Protein geranylgeranyl 64.8 22 0.00047 39.3 7.5 114 417-531 125-252 (421)
330 KOG2300 Uncharacterized conser 64.6 58 0.0013 37.2 10.8 107 417-528 337-466 (629)
331 COG2976 Uncharacterized protei 64.3 60 0.0013 32.9 9.9 101 421-525 70-177 (207)
332 KOG1914 mRNA cleavage and poly 63.0 67 0.0014 37.1 11.0 91 427-521 10-100 (656)
333 KOG4014 Uncharacterized conser 61.7 46 0.001 33.8 8.6 114 394-517 31-154 (248)
334 KOG2422 Uncharacterized conser 61.6 68 0.0015 37.2 10.8 112 393-505 332-451 (665)
335 KOG0546 HSP90 co-chaperone CPR 60.7 7.6 0.00017 42.0 3.2 103 416-520 235-356 (372)
336 KOG4814 Uncharacterized conser 60.4 42 0.00091 39.4 9.0 80 444-525 361-446 (872)
337 PF09986 DUF2225: Uncharacteri 60.2 39 0.00084 33.7 7.9 61 419-480 141-208 (214)
338 smart00299 CLH Clathrin heavy 59.6 91 0.002 27.7 9.5 44 417-462 21-64 (140)
339 KOG4014 Uncharacterized conser 59.3 29 0.00063 35.2 6.7 91 436-529 33-127 (248)
340 PF10602 RPN7: 26S proteasome 57.6 89 0.0019 30.1 9.6 87 416-503 49-143 (177)
341 smart00671 SEL1 Sel1-like repe 57.3 17 0.00037 24.7 3.5 29 474-502 3-34 (36)
342 KOG4279 Serine/threonine prote 57.0 7.9 0.00017 45.7 2.7 123 393-523 197-336 (1226)
343 COG3118 Thioredoxin domain-con 56.4 37 0.0008 36.2 7.3 54 444-499 141-194 (304)
344 PF15015 NYD-SP12_N: Spermatog 56.3 20 0.00043 40.1 5.5 47 450-497 240-286 (569)
345 PF10345 Cohesin_load: Cohesin 55.5 1.7E+02 0.0037 33.2 12.9 85 419-505 37-131 (608)
346 KOG0276 Vesicle coat complex C 55.1 50 0.0011 38.5 8.5 19 516-534 730-748 (794)
347 COG2912 Uncharacterized conser 54.0 24 0.00053 36.9 5.4 60 416-476 194-253 (269)
348 KOG3807 Predicted membrane pro 53.7 62 0.0013 35.6 8.5 101 419-523 200-327 (556)
349 PF04212 MIT: MIT (microtubule 51.8 39 0.00084 27.3 5.3 25 441-466 9-33 (69)
350 PF13226 DUF4034: Domain of un 51.7 1.1E+02 0.0024 32.1 9.9 68 457-524 62-150 (277)
351 PF02184 HAT: HAT (Half-A-TPR) 51.5 25 0.00055 25.7 3.6 27 453-480 2-28 (32)
352 PF07079 DUF1347: Protein of u 51.0 1.6E+02 0.0036 33.5 11.4 111 417-532 394-523 (549)
353 PRK15490 Vi polysaccharide bio 50.7 66 0.0014 37.1 8.6 58 414-477 53-110 (578)
354 PF10579 Rapsyn_N: Rapsyn N-te 50.0 79 0.0017 27.7 7.0 56 444-501 13-71 (80)
355 COG2909 MalT ATP-dependent tra 49.5 1.9E+02 0.0042 35.1 12.2 103 417-521 429-551 (894)
356 PHA02537 M terminase endonucle 49.1 28 0.00061 35.5 4.9 24 410-433 90-113 (230)
357 PF12968 DUF3856: Domain of Un 49.0 1.4E+02 0.0031 28.5 9.0 76 451-527 22-120 (144)
358 PF15015 NYD-SP12_N: Spermatog 49.0 1.5E+02 0.0033 33.6 10.6 74 451-525 196-280 (569)
359 smart00671 SEL1 Sel1-like repe 48.3 33 0.00073 23.2 3.8 30 438-467 2-34 (36)
360 COG4455 ImpE Protein of avirul 48.0 79 0.0017 32.9 7.8 59 450-509 13-71 (273)
361 TIGR02996 rpt_mate_G_obs repea 47.7 32 0.00069 26.7 3.8 32 425-457 4-35 (42)
362 COG4941 Predicted RNA polymera 47.2 2.2E+02 0.0048 31.4 11.3 91 417-511 310-403 (415)
363 cd02681 MIT_calpain7_1 MIT: do 46.9 42 0.0009 28.7 4.9 24 443-467 12-35 (76)
364 cd02682 MIT_AAA_Arch MIT: doma 45.9 44 0.00096 28.6 4.9 25 441-466 10-34 (75)
365 PF08238 Sel1: Sel1 repeat; I 45.7 44 0.00095 23.1 4.2 15 488-502 23-37 (39)
366 PRK13184 pknD serine/threonine 43.3 2.2E+02 0.0048 34.8 11.7 106 417-524 533-642 (932)
367 PF14863 Alkyl_sulf_dimr: Alky 43.0 48 0.001 31.3 5.2 46 436-482 69-114 (141)
368 PF04053 Coatomer_WDAD: Coatom 42.5 1E+02 0.0022 34.2 8.3 59 433-501 343-401 (443)
369 PF02184 HAT: HAT (Half-A-TPR) 41.5 45 0.00098 24.5 3.6 28 418-446 2-29 (32)
370 KOG0890 Protein kinase of the 40.7 1.6E+02 0.0034 39.3 10.3 81 419-503 1645-1732(2382)
371 smart00745 MIT Microtubule Int 40.6 46 0.00099 27.3 4.1 17 450-466 20-36 (77)
372 KOG3783 Uncharacterized conser 40.1 1.4E+02 0.003 34.3 8.9 73 433-506 444-524 (546)
373 cd02677 MIT_SNX15 MIT: domain 40.1 37 0.00079 28.8 3.5 16 451-466 19-34 (75)
374 KOG2758 Translation initiation 40.1 2E+02 0.0044 31.6 9.6 112 377-501 76-195 (432)
375 COG3629 DnrI DNA-binding trans 39.9 72 0.0016 33.5 6.4 78 416-506 166-243 (280)
376 KOG2422 Uncharacterized conser 39.9 3.9E+02 0.0085 31.3 12.4 92 417-510 252-380 (665)
377 PF10345 Cohesin_load: Cohesin 39.9 4E+02 0.0087 30.3 12.7 96 420-522 8-115 (608)
378 COG4649 Uncharacterized protei 39.5 1.8E+02 0.0039 29.5 8.6 108 417-526 72-186 (221)
379 cd02683 MIT_1 MIT: domain cont 39.4 67 0.0015 27.3 5.0 17 450-466 18-34 (77)
380 PF04190 DUF410: Protein of un 38.9 1.9E+02 0.0041 29.6 9.1 67 435-502 88-170 (260)
381 PF09205 DUF1955: Domain of un 38.2 2.1E+02 0.0046 27.9 8.6 84 413-502 66-149 (161)
382 TIGR03504 FimV_Cterm FimV C-te 37.7 55 0.0012 25.2 3.8 25 441-466 3-27 (44)
383 PF10516 SHNi-TPR: SHNi-TPR; 37.0 52 0.0011 24.6 3.5 27 440-467 4-30 (38)
384 cd02680 MIT_calpain7_2 MIT: do 37.0 66 0.0014 27.6 4.6 18 450-467 18-35 (75)
385 PRK15180 Vi polysaccharide bio 36.9 86 0.0019 36.0 6.6 45 417-462 303-347 (831)
386 COG3947 Response regulator con 36.4 3.5E+02 0.0076 29.5 10.6 55 443-499 285-339 (361)
387 TIGR02996 rpt_mate_G_obs repea 35.8 64 0.0014 25.1 3.9 33 459-492 3-35 (42)
388 PF10579 Rapsyn_N: Rapsyn N-te 35.7 1.3E+02 0.0028 26.3 6.2 52 415-467 18-72 (80)
389 PF05053 Menin: Menin; InterP 35.4 1.1E+02 0.0024 35.5 7.2 66 435-501 275-346 (618)
390 COG5107 RNA14 Pre-mRNA 3'-end 35.2 3.2E+02 0.0069 31.5 10.5 96 423-521 28-123 (660)
391 COG2909 MalT ATP-dependent tra 34.8 1.6E+02 0.0035 35.6 8.7 89 436-526 414-516 (894)
392 cd02656 MIT MIT: domain contai 34.8 65 0.0014 26.4 4.1 17 450-466 18-34 (75)
393 PF04053 Coatomer_WDAD: Coatom 34.7 65 0.0014 35.7 5.4 68 423-501 308-375 (443)
394 cd02679 MIT_spastin MIT: domai 34.4 71 0.0015 27.6 4.4 16 451-466 21-36 (79)
395 PRK13184 pknD serine/threonine 34.0 1.7E+02 0.0036 35.8 8.9 91 417-509 489-588 (932)
396 cd02678 MIT_VPS4 MIT: domain c 33.3 1E+02 0.0022 25.6 5.1 17 450-466 18-34 (75)
397 PRK15490 Vi polysaccharide bio 32.3 1.5E+02 0.0032 34.4 7.7 82 417-505 22-103 (578)
398 PF10516 SHNi-TPR: SHNi-TPR; 31.4 78 0.0017 23.7 3.6 29 473-502 2-30 (38)
399 PF14863 Alkyl_sulf_dimr: Alky 30.2 2.1E+02 0.0045 27.2 7.2 35 487-521 84-118 (141)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 30.1 2.2E+02 0.0047 26.0 7.2 44 456-500 81-126 (126)
401 PF12854 PPR_1: PPR repeat 29.5 1E+02 0.0022 21.8 3.9 27 436-463 6-32 (34)
402 KOG0546 HSP90 co-chaperone CPR 29.2 63 0.0014 35.3 4.0 64 416-480 288-351 (372)
403 PF06022 Cir_Bir_Yir: Plasmodi 27.8 56 0.0012 34.2 3.3 28 236-263 52-89 (280)
404 PF10952 DUF2753: Protein of u 27.4 2.4E+02 0.0051 27.1 6.9 24 475-499 53-76 (140)
405 PF04212 MIT: MIT (microtubule 26.9 1.3E+02 0.0028 24.2 4.6 14 456-469 30-43 (69)
406 cd02682 MIT_AAA_Arch MIT: doma 26.9 91 0.002 26.8 3.8 45 421-474 5-49 (75)
407 cd00280 TRFH Telomeric Repeat 26.9 1.4E+02 0.003 30.2 5.6 70 370-448 86-155 (200)
408 COG4907 Predicted membrane pro 26.8 44 0.00095 37.7 2.4 32 6-37 278-309 (595)
409 COG5107 RNA14 Pre-mRNA 3'-end 26.0 2.6E+02 0.0057 32.1 8.0 50 416-466 445-494 (660)
410 KOG1839 Uncharacterized protei 26.0 1.2E+02 0.0027 37.8 6.0 99 425-525 960-1075(1236)
411 KOG0276 Vesicle coat complex C 26.0 2.3E+02 0.0049 33.5 7.7 77 417-499 651-747 (794)
412 KOG1839 Uncharacterized protei 25.6 1.2E+02 0.0026 38.0 5.8 105 394-503 967-1087(1236)
413 KOG2235 Uncharacterized conser 25.5 6.3E+02 0.014 30.0 11.0 71 369-439 482-566 (776)
414 KOG2041 WD40 repeat protein [G 25.4 1.3E+02 0.0028 36.1 5.7 75 415-500 746-823 (1189)
415 KOG0890 Protein kinase of the 25.2 3.7E+02 0.008 36.1 10.0 103 413-518 1680-1800(2382)
416 PF09655 Nitr_red_assoc: Conse 24.1 27 0.00059 33.5 0.2 41 133-181 75-115 (144)
417 COG4649 Uncharacterized protei 24.1 7.3E+02 0.016 25.4 9.9 101 415-519 106-212 (221)
418 cd02677 MIT_SNX15 MIT: domain 23.8 89 0.0019 26.5 3.2 20 413-432 16-35 (75)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 23.7 1.3E+02 0.0027 27.6 4.4 44 421-465 81-126 (126)
420 KOG2114 Vacuolar assembly/sort 23.6 2.5E+02 0.0055 34.1 7.7 79 438-524 369-448 (933)
421 PF09205 DUF1955: Domain of un 23.5 2.5E+02 0.0055 27.4 6.4 49 417-466 100-148 (161)
422 cd02684 MIT_2 MIT: domain cont 23.4 1.8E+02 0.0038 24.5 4.9 17 450-466 18-34 (75)
423 cd02678 MIT_VPS4 MIT: domain c 22.5 1.9E+02 0.004 24.0 4.8 43 419-470 3-45 (75)
424 cd02681 MIT_calpain7_1 MIT: do 22.4 50 0.0011 28.2 1.4 19 413-431 16-34 (76)
425 COG3947 Response regulator con 21.5 1.6E+02 0.0035 31.9 5.1 47 417-464 293-339 (361)
426 KOG0985 Vesicle coat protein c 21.1 3.8E+02 0.0083 33.7 8.5 59 436-501 1103-1161(1666)
427 PF13226 DUF4034: Domain of un 21.0 3.1E+02 0.0068 28.9 7.1 59 422-480 62-141 (277)
428 TIGR01590 yir-bir-cir_Pla yir/ 20.1 97 0.0021 30.9 3.1 28 236-263 36-73 (199)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=1.8e-13 Score=124.58 Aligned_cols=104 Identities=18% Similarity=0.130 Sum_probs=97.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|++++|..+|++++..+|.++.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++. ..|++++|++
T Consensus 36 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~-~~g~~~eAi~ 113 (144)
T PRK15359 36 QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK-MMGEPGLARE 113 (144)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHH
Confidence 4599999999999999999999999999999998 4999999999999999999999999999999776 5799999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNT 520 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~ 520 (540)
.|++|++++|+++.++.+++.++..+
T Consensus 114 ~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 114 AFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 2
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=8.4e-13 Score=126.68 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD--LWAAE 493 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD--~EEAe 493 (540)
.++.+++...++++++.+|+|+.+|..+|.++. ..|++++|+.+|++|++++|++++++.++|.+++...|+ +++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 367799999999999999999999999999888 599999999999999999999999999999876555666 59999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+.+++|++++|+++.+++++|..+...|++++
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999874
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.45 E-value=6e-14 Score=153.39 Aligned_cols=126 Identities=20% Similarity=0.199 Sum_probs=88.1
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE 473 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe 473 (540)
.|||..+..+.+.+++.- ..+.|++|..+|++|+.+.|+++.++.|+|-+|++ +|+.|-|+..|+|||+++|++++
T Consensus 246 kldP~f~dAYiNLGnV~k---e~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYK---EARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred cCCCcchHHHhhHHHHHH---HHhcchHHHHHHHHHHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCCchH
Confidence 457777777777766642 23566777777777777777777777777776664 77777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
++.|+|..|-. +|+..||+.+|.+|+.+.|+++++..|||+++.++|..|
T Consensus 322 Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 322 AYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred HHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence 77777776543 577777777777777777777777777777777777655
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.41 E-value=1.2e-12 Score=119.08 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204 423 DLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA 502 (540)
Q Consensus 423 e~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeL 502 (540)
+.+|++|++++|++ +.++|..+.. .|++++|..+|++++.++|+++.++.++|.++. ..|++++|+.+|++|+++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQ-EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 67999999999986 5578888884 999999999999999999999999999999876 479999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcc
Q 009204 503 EPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 503 DPdnpeal~NLA~~L~~~GR~Et 525 (540)
+|+++.+++++|.++...|++++
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999875
No 5
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=9e-12 Score=135.46 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..+++++|..++++|++++|+++.++..+|.++. ..|++++|+.+|++|++++|+++.++.++|.++. ..|++++|++
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence 4467899999999999999999999999998887 4899999999999999999999999999998765 4788999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+|++|++++|.++.++..++.+++..|++++
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccCHHH
Confidence 9999999999988877777777778888764
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-12 Score=142.05 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
|+..+|+++|.+||.+.|+++++++|+|.++.+ +|.+++|..+|++|++..|..+.+++|||.+| +++|++++|+.+|
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~-kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASIY-KQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHHH-HhcccHHHHHHHH
Confidence 555666666666666666666666666665553 55666666666666666666666666665543 3455566666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
+.|++++|..++++.|+|+.|..+|+..
T Consensus 412 kealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 412 KEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 6666666666666666666666666544
No 7
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=1.3e-11 Score=122.75 Aligned_cols=105 Identities=24% Similarity=0.297 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAe 493 (540)
|+.+.|.+.|++|++++|++.++++|||.||+ .+|++++|..+|++|+. +|.+ +..+-|+|.+- ...|+.+.|.
T Consensus 83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Ca-l~~gq~~~A~ 159 (250)
T COG3063 83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCA-LKAGQFDQAE 159 (250)
T ss_pred CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHH-hhcCCchhHH
Confidence 55566666666666666666666666666665 35666666666666655 3333 33555555433 2345566666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
++|+++++++|+++.....++..++..|++-
T Consensus 160 ~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 160 EYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 6666666666666666666666666655553
No 8
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=126.40 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
++|.+|...|.+||+++|+|+-.|.|.|.+|. ..|.++.|.+-.+.||++||.+..+|..||.+++. +|++++|++.|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ay 172 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEAY 172 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHHH
Confidence 78999999999999999999999999999999 59999999999999999999999999999998764 79999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
+||+.++|+|..+..+|..+-..++..+
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988888876
No 9
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=1.9e-11 Score=106.39 Aligned_cols=111 Identities=21% Similarity=0.210 Sum_probs=77.8
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE 473 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe 473 (540)
.++|+........+... ...|++++|..+|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.
T Consensus 11 ~~~p~~~~~~~~~a~~~---~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~ 86 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNL---YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPR 86 (135)
T ss_pred cCChhhHHHHHHHHHHH---HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChH
Confidence 44555544443333222 23467777888888877777877777777777777 377788888888888888888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204 474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea 509 (540)
.+.++|.++. ..|++++|+.+|+++++++|++...
T Consensus 87 ~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 87 PYFHAAECLL-ALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhccccchH
Confidence 7777777655 3677888888888888887777663
No 10
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=2.8e-11 Score=131.67 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|++|++++|.++.++..++.+++. .|++++|+.
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~ 427 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAIR 427 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHHH
Confidence 3489999999999999999999999999999988 49999999999999999999999887776665554 688999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAE-PNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLD-Pdnpeal~NLA~~L~~~GR~Et 525 (540)
+++++++.+ |+++.++.++|.+|..+|++++
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~e 459 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHEL 459 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHH
Confidence 999999885 8899999999999999999875
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.28 E-value=3.7e-11 Score=131.36 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=101.4
Q ss_pred CCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 009204 395 LDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA 474 (540)
Q Consensus 395 LD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA 474 (540)
++|.....+...+... ...|++++|..+|+++++.+|+++.+++++|.+++ ..|++++|+.+|++|++++|++..+
T Consensus 360 l~P~~~~~~~~la~~~---~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 360 LDPRVTQSYIKRASMN---LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred cCCCcHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHH
Confidence 3555444444433332 24578888888888888888888888888888877 4888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204 475 LSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 475 l~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~ 527 (540)
+.++|.+++ ..|++++|+.+|++++...|+++.++..+|.++..+|++++|-
T Consensus 436 ~~~la~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 436 HIQLGVTQY-KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 888888765 4788888888888888888888888888888888888887653
No 12
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.27 E-value=6.3e-11 Score=123.04 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.++|++|+.+|++||+++|+++.+++++|.++. ..|++++|+.++++||+++|+++.++.++|.+++. .|++++|+.+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHHH
Confidence 489999999999999999999999999999988 59999999999999999999999999999988764 7999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWNTG 521 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~~G 521 (540)
|++|++++|+++.+...++.+...+.
T Consensus 93 ~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 93 LEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999888888865553
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.26 E-value=4.8e-11 Score=130.45 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|++++|...|++++.++|+++.++.++|.++.. .|++++|+.+|++|++++|+++.++.++|.+++ ..|++++|+.
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~ 420 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGK 420 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHH
Confidence 35899999999999999999999999999999884 999999999999999999999999999999876 4799999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
+|+++++++|++..++.++|.++..+|++++|
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999998743
No 14
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=2.7e-11 Score=120.60 Aligned_cols=107 Identities=20% Similarity=0.327 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|++..|...+++||+.||++..+|..+|.++. ..|+.+.|.+.|++|+.++|++.++++|||+||+. +|++++|..
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q 124 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQ 124 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHH
Confidence 3489999999999999999999999999998777 69999999999999999999999999999999986 679999999
Q ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHcCCCc
Q 009204 495 TYQQAMAAEPN---SSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 495 ~feKALeLDPd---npeal~NLA~~L~~~GR~E 524 (540)
+|++|+. +|. .+..+.|+|.+..++|+.+
T Consensus 125 ~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 125 QFERALA-DPAYGEPSDTLENLGLCALKAGQFD 156 (250)
T ss_pred HHHHHHh-CCCCCCcchhhhhhHHHHhhcCCch
Confidence 9999998 554 5568999999999999976
No 15
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=9.1e-11 Score=118.16 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|++++|...|++|++++|+++.+|+++|.++. ..|++++|++.|++|++++|++..++.++|.+++. .|++++|++
T Consensus 76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~ 153 (296)
T PRK11189 76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQD 153 (296)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence 4589999999999999999999999999999888 59999999999999999999999999999998764 789999999
Q ss_pred HHHHHHHhCCCCHH
Q 009204 495 TYQQAMAAEPNSSS 508 (540)
Q Consensus 495 ~feKALeLDPdnpe 508 (540)
.|+++++++|+++.
T Consensus 154 ~~~~al~~~P~~~~ 167 (296)
T PRK11189 154 DLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHhCCCCHH
Confidence 99999999999985
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.24 E-value=6.2e-11 Score=137.79 Aligned_cols=107 Identities=11% Similarity=0.062 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.|++++|..+|++|++.+|+ +.++.++|.++.. .|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 39999999999999999996 9999999999884 9999999999999999999999999999988764 7999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
|++|++++|+++.++.++|.++..+|++++
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999763
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=2.1e-10 Score=103.35 Aligned_cols=111 Identities=21% Similarity=0.282 Sum_probs=100.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD--PPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD--PndAeAl~NLA~~L~~~rGD~EEA 492 (540)
..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++.. |.....+.++|.++. ..|++++|
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 154 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL-KAGDFDKA 154 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH-HcCCHHHH
Confidence 4589999999999999999999999999999988 4999999999999999864 566778888998776 47999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~ 527 (540)
+.+|+++++.+|+++..+..+|.++...|+++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999998653
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=2.3e-10 Score=102.99 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEE--PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalD--P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
..|++++|...|++++... |.....+.++|.++. ..|++++|+.+|+++++.+|+++.++..+|.+++. .|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL-RGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-cCCHHHH
Confidence 4589999999999999864 566788999999888 59999999999999999999999999999988764 7999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~ 527 (540)
+.++++++...|+++..+..++.++...|+.+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999887653
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=2.3e-11 Score=133.85 Aligned_cols=109 Identities=15% Similarity=0.202 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
.++|.|+.+|++||..+|.+-.+|+++|.+|. ++++++.|+-+|++|++++|.+...+..+|.++. ++|+.++|+.+|
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~-~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH-QLKRKDKALQLY 546 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH-HhhhhhHHHHHH
Confidence 67999999999999999999999999999988 6999999999999999999999999999999875 578999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~Et~~ 527 (540)
++|+.+||.++...++.|.+|...+++++|.
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 9999999999999999999999999998664
No 20
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.19 E-value=1.4e-10 Score=130.60 Aligned_cols=109 Identities=7% Similarity=-0.064 Sum_probs=104.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|++++|+.+++.+++++|++..++.++|..|.+ .+++++|...+++++..+|+++++++++|.++. ..|++++|++
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHH
Confidence 45999999999999999999999999999999995 999999999999999999999999999999765 5799999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+|+++++.+|+++.++.++|++|..+|+.++
T Consensus 176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 176 CFERLSRQHPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999875
No 21
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=2.5e-10 Score=99.44 Aligned_cols=101 Identities=19% Similarity=0.129 Sum_probs=94.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009204 424 LLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAE 503 (540)
Q Consensus 424 ~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLD 503 (540)
..|+++++.+|++..++..+|..+. ..|++++|.++|++++.++|+++.++.++|.++.. .|++++|+++|++++..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999988 49999999999999999999999999999998765 689999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCccc
Q 009204 504 PNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 504 Pdnpeal~NLA~~L~~~GR~Et~ 526 (540)
|+++..++++|.++...|+++.|
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999998754
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.17 E-value=5.6e-11 Score=116.88 Aligned_cols=113 Identities=22% Similarity=0.264 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
+.|+.++|+.+|++|++++|+|+.++..++.++. ..|+.++|.+.+++..+..|+++..+..+|.++.. .|++++|+.
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~~Al~ 235 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYEEALE 235 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccccccccc
Confidence 4599999999999999999999999999999888 49999999999999999999999999999998764 689999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccccC
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPL 529 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~pl 529 (540)
+|+++++.+|+++.++.+||.+|...|+.++|..+
T Consensus 236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999987543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.17 E-value=2.4e-10 Score=127.23 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDR----AEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~de----AEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE 491 (540)
.|++++|+..|+++++.+|+++.++.++|.++.. .|++++ |+.+|++|++++|+++.++.++|.++.. .|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHH
Confidence 4677777777777777777777777777777663 777764 6777777777777777777777776553 567777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
|+.+|+++++++|+++.++.++|.++..+|++++
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777777777777777664
No 24
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=3.7e-10 Score=113.82 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHcCC---C-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEP---N-NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP---~-Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
+..+.++..+.++|...| . ++..|+++|.++. ..|++++|...|++|++++|+++.+|+++|.++. ..|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHH
Confidence 567889999999997433 3 3678999999888 5999999999999999999999999999998765 58999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
++.|++|++++|++..++.++|.++...|++++|
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999998754
No 25
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=6.2e-10 Score=106.99 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKD--YDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD--~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
..|++++|..+|++|++++|+++.++.++|.+++...|+ +++|.+.+++|++++|+++.++.++|..++. .|++++|
T Consensus 85 ~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~A 163 (198)
T PRK10370 85 WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADYAQA 163 (198)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHH
Confidence 348999999999999999999999999999976434677 5999999999999999999999999998764 8999999
Q ss_pred HHHHHHHHHhCCCCHH
Q 009204 493 EETYQQAMAAEPNSSS 508 (540)
Q Consensus 493 ee~feKALeLDPdnpe 508 (540)
+.+|+++++++|.+..
T Consensus 164 i~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 164 IELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHhhCCCCcc
Confidence 9999999999986554
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.10 E-value=8.5e-10 Score=118.42 Aligned_cols=108 Identities=23% Similarity=0.227 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.|++++|..+|+++++.+|+++.++.++|.++.. .|+ .+|+.++++++++.|+++..+.++|.++. ..|++++|+++
T Consensus 783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLV-EKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHH
Confidence 3667777777777777777777777777776663 666 66777777777777777777777777654 36777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
|+++++++|.++.++.+++.+++..|+.++|
T Consensus 860 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 860 LRKAVNIAPEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777777777777776653
No 27
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.10 E-value=4e-10 Score=88.61 Aligned_cols=68 Identities=29% Similarity=0.370 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 009204 435 NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK-DLWAAEETYQQAMAAEP 504 (540)
Q Consensus 435 ~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG-D~EEAee~feKALeLDP 504 (540)
+++.+|.++|..++. .|++++|+.+|++||+++|+++.++.++|.+++. .| ++++|++++++|++++|
T Consensus 1 e~a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 478899999999995 9999999999999999999999999999998765 67 79999999999999998
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.09 E-value=1.2e-09 Score=121.68 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=99.2
Q ss_pred CCCHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204 416 YMDYFR----TDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 416 ~Gd~ee----Ae~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE 491 (540)
.|++++ |+.+|+++++++|+++.++.++|.++.. .|++++|+.+|+++++++|+++.++.++|.++. ..|++++
T Consensus 259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~-~~G~~~e 336 (656)
T PRK15174 259 SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEKAIPLLQQSLATHPDLPYVRAMYARALR-QVGQYTA 336 (656)
T ss_pred cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHH
Confidence 366664 8999999999999999999999999994 999999999999999999999999999999876 4799999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999998888888999999999774
No 29
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.07 E-value=1.2e-09 Score=110.02 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|+|.+|...+++|...+|+|..+|..+|.+|.+ .|++++|...|.+|+++.|+++.+.+|+|..++ .+||++.|+.
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~-L~gd~~~A~~ 189 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAYRQALELAPNEPSIANNLGMSLL-LRGDLEDAET 189 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHHHHHHHhccCCchhhhhHHHHHH-HcCCHHHHHH
Confidence 34999999999999999999999999999999885 999999999999999999999999999999765 5899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccccCCCC
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSS 532 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~pl~~~ 532 (540)
++.+|...-+.+..+..|++.+...+|+.+.+-.+.++
T Consensus 190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999999999998876555443
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.06 E-value=1.5e-09 Score=127.49 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-----------
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW----------- 483 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~----------- 483 (540)
..|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++|++++|++..++.+++.++.
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3588999999999999999999999999999888 4999999999999999999999888777665431
Q ss_pred ------------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 484 ------------------------------LVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 484 ------------------------------~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
...|++++|+++|++|++++|+++.+++.+|.+|..+|++++|
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1358899999999999999999999999999999999998753
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.05 E-value=7.7e-10 Score=128.81 Aligned_cols=108 Identities=15% Similarity=0.016 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
+.|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|++|++++|+++.++.++|.++. ..|++++|+.
T Consensus 621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~-~lGd~~eA~~ 698 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ-RLDDMAATQH 698 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence 56999999999999999999999999999999995 999999999999999999999999999999875 5899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
+|++|++++|+++.+...+|.++....+.+
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence 999999999999999999998887666543
No 32
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.05 E-value=2.5e-09 Score=101.09 Aligned_cols=112 Identities=10% Similarity=0.028 Sum_probs=93.7
Q ss_pred cCC-HHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204 394 ILD-HETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA 472 (540)
Q Consensus 394 aLD-~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA 472 (540)
-++ ++.+..+=+.... .-+.|++++|+..|+-....||.+...|+|||.++. .+|++++|+.+|.+|+.++|+||
T Consensus 28 ~~~~~~~l~~lY~~A~~---ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQ---LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred CCChHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCc
Confidence 445 6666665443222 235699999999999999999999999999999888 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH
Q 009204 473 EALSQYADFLWLVRKDLWAAEETYQQAMAAE---PNSSSYA 510 (540)
Q Consensus 473 eAl~NLA~~L~~~rGD~EEAee~feKALeLD---Pdnpeal 510 (540)
.++.++|..++ ..|+.++|++.|+.|+... |.+..+.
T Consensus 104 ~~~~~ag~c~L-~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~ 143 (157)
T PRK15363 104 QAPWAAAECYL-ACDNVCYAIKALKAVVRICGEVSEHQILR 143 (157)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 99999998776 4799999999999999986 4444433
No 33
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.01 E-value=4.1e-09 Score=79.68 Aligned_cols=88 Identities=24% Similarity=0.306 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.|++++|...++++++..|+++.++..+|.++.. .+++++|+++|++++.+.|.+..++..+|.++.. .|++++|..+
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~ 90 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEALEA 90 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHHHH
Confidence 4889999999999999999999999999998884 8999999999999999999999999999987664 6889999999
Q ss_pred HHHHHHhCCC
Q 009204 496 YQQAMAAEPN 505 (540)
Q Consensus 496 feKALeLDPd 505 (540)
+++++..+|+
T Consensus 91 ~~~~~~~~~~ 100 (100)
T cd00189 91 YEKALELDPN 100 (100)
T ss_pred HHHHHccCCC
Confidence 9999998874
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=3.3e-10 Score=124.91 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
+++++.|+++|++|+++||++..+|.-+|.=+. ...++|+|..+|++||..+|.+..||+.+|.++.+ +++++.|+-+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek~e~Ae~~ 511 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEKLEFAEFH 511 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cchhhHHHHH
Confidence 477999999999999999998888888887666 48889999999999999999999999999988765 6789999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
|++|++++|.+......+|.++.+.|+.|+
T Consensus 512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 512 FQKAVEINPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred HHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence 999999999999999999999999998763
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.00 E-value=6.8e-09 Score=117.38 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
+.|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+.+++++++.+|+++. +..+|.++. ..|++++|+.
T Consensus 61 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~ 137 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK-RAGRHWDELR 137 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-HCCCHHHHHH
Confidence 4589999999999999999999999999999888 499999999999999999999999 999998765 5799999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
.|+++++++|+++.++..+|.++...|+.+.
T Consensus 138 ~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 138 AMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999999999998888763
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.98 E-value=5.4e-09 Score=112.29 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.|++++|...|++++..+|+++.++..+|.++. ..|++++|++.++++++.+|++..++..+|.++. ..|++++|+.+
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~ 215 (899)
T TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLL-SLGNIELALAA 215 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-hcCCHHHHHHH
Confidence 366777777777777777777777777777666 3777777777777777777777777776666554 35677777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
|++++.++|+++.++..++.++...|++++
T Consensus 216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 216 YRKAIALRPNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777777777776654
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.98 E-value=2.6e-09 Score=100.97 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=87.2
Q ss_pred HHHcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 009204 429 GVAEE-PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507 (540)
Q Consensus 429 ALalD-P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp 507 (540)
...++ ++.-+.++.||..++. .|++++|+..|+.+..+||.++..|.+||.++ +.+|++++|+..|.+|+.++|++|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~-~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLME-VKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCc
Confidence 34457 7888899999999995 99999999999999999999999999999875 568999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcc
Q 009204 508 SYASKYASFLWNTGGEET 525 (540)
Q Consensus 508 eal~NLA~~L~~~GR~Et 525 (540)
..++++|.+++..|+.+.
T Consensus 104 ~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 104 QAPWAAAECYLACDNVCY 121 (157)
T ss_pred hHHHHHHHHHHHcCCHHH
Confidence 999999999999999763
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.97 E-value=4.4e-09 Score=123.60 Aligned_cols=108 Identities=21% Similarity=0.127 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH--------------HHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA--------------LSQYADF 481 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA--------------l~NLA~~ 481 (540)
.|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+.+|++|++++|++... +...|..
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~-~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQ-QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 4788888888888888888888888888887774 888888888888888888876532 1122433
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 482 LWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 482 L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+. ..|++++|+.+|++|++++|+++.++..+|.++..+|++++
T Consensus 361 ~~-~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 361 AL-KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred HH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33 36778888888888888888888777788888888777653
No 39
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.94 E-value=1.6e-08 Score=84.67 Aligned_cols=93 Identities=22% Similarity=0.175 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDL 489 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~ 489 (540)
.|++++|...|++++..+|++ +.+++.+|.++. ..|++++|+.+|++++..+|++ +.++.++|.++. ..|++
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~ 92 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ-ELGDK 92 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH-HhCCh
Confidence 489999999999999999887 578889999988 5999999999999999999986 678999998776 47899
Q ss_pred HHHHHHHHHHHHhCCCCHHHH
Q 009204 490 WAAEETYQQAMAAEPNSSSYA 510 (540)
Q Consensus 490 EEAee~feKALeLDPdnpeal 510 (540)
++|+.+|+++++..|+++.+.
T Consensus 93 ~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 93 EKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHHHHCcCChhHH
Confidence 999999999999999987754
No 40
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=4e-09 Score=82.32 Aligned_cols=64 Identities=27% Similarity=0.417 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 009204 442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507 (540)
Q Consensus 442 NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp 507 (540)
.+|..++. .|++++|+++|+++++.+|++++++..+|.+++ .+|++++|+.+|+++++++|++|
T Consensus 2 ~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQ-QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH-CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 56888884 999999999999999999999999999999877 47999999999999999999986
No 41
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.91 E-value=2.7e-08 Score=91.44 Aligned_cols=105 Identities=22% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------Hc
Q 009204 416 YMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL------VR 486 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~------~r 486 (540)
.|++++|..+|++|+.+.|+. +.++.++|.++. ..|++++|+++|++|++++|.+...+.++|.++.. ..
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~ 126 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ 126 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence 388999999999999997763 458999999888 59999999999999999999999999999987762 24
Q ss_pred CCHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 487 KDLW-------AAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 487 GD~E-------EAee~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
|+++ +|+.+|++++..+|++.. ..+..+..+|+.+
T Consensus 127 g~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~~~ 168 (168)
T CHL00033 127 GDSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGRFE 168 (168)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcCCC
Confidence 5655 777788888889997653 3444555666653
No 42
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.90 E-value=2.3e-08 Score=112.98 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=87.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
+.+++++|...+++++..+|+++.+++.+|.++.. .|++++|+++|+++++-+|++++++.++|..|. .+|+.++|..
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~-~~G~~~~A~~ 209 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLT-RRGALWRARD 209 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHH
Confidence 45899999999999999999999999999999985 999999999999999999999999999999765 5899999999
Q ss_pred HHHHHHHhCCCCHHHHHHH
Q 009204 495 TYQQAMAAEPNSSSYASKY 513 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NL 513 (540)
.|++|+++.-+-...+.+|
T Consensus 210 ~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 210 VLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhhCcchHHHHHH
Confidence 9999999977665554443
No 43
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.88 E-value=2.1e-08 Score=101.34 Aligned_cols=112 Identities=19% Similarity=0.140 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPL-----LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL 489 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~-----allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~ 489 (540)
..|++++|...|+++++.+|.+.. .+.++|..+. ..|++++|+.+|+++++++|++..++..+|.++. ..|++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~ 230 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDY 230 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCH
Confidence 468999999999999999887643 5667888777 4999999999999999999999999999998765 47999
Q ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCccccc
Q 009204 490 WAAEETYQQAMAAEPNS-SSYASKYASFLWNTGGEETCFP 528 (540)
Q Consensus 490 EEAee~feKALeLDPdn-peal~NLA~~L~~~GR~Et~~p 528 (540)
++|+++|++++..+|++ ..++..++.++...|+++++..
T Consensus 231 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 231 AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999986 4667889999999999987543
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.87 E-value=2.4e-08 Score=101.01 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHcCCHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-AEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-AeAl~NLA~~L~~~rGD~EEAee 494 (540)
.+++++|..+|+++++.+|++..++..+|.++. ..|++++|+++|+++++.+|++ ..++..++.++. ..|++++|++
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~ 270 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ-ALGDEAEGLE 270 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 367777777777777777777777777777666 3777777777777777777665 345555665544 3567777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+++++++.+|+...+ ..++.++...|++++
T Consensus 271 ~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~ 300 (389)
T PRK11788 271 FLRRALEEYPGADLL-LALAQLLEEQEGPEA 300 (389)
T ss_pred HHHHHHHhCCCchHH-HHHHHHHHHhCCHHH
Confidence 777777777765443 667777777777653
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=2e-08 Score=95.71 Aligned_cols=109 Identities=20% Similarity=0.149 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHH----
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLV---- 485 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~---- 485 (540)
.|++++|...|++++..+|+++ .+++.+|.++. ..|++++|+..|+++++.+|+++. ++..+|.+++..
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence 4899999999999999999987 57899999988 599999999999999999999887 688888877642
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCcc
Q 009204 486 ---RKDLWAAEETYQQAMAAEPNSSSYA-----------------SKYASFLWNTGGEET 525 (540)
Q Consensus 486 ---rGD~EEAee~feKALeLDPdnpeal-----------------~NLA~~L~~~GR~Et 525 (540)
.|++++|++.|++++..+|++..++ ..+|.+++..|++++
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 2679999999999999999987553 356788888898763
No 46
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=4e-09 Score=115.25 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 418 DYFRTDLLYQMGVAEEP--NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 418 d~eeAe~lYqkALalDP--~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.+..-.++|..|....| .|++++..||.+++ ..|+|++|..||+.||..+|+|...|+.||..|.. ..+.++|+..
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence 46677889999999999 79999999999888 59999999999999999999999999999998765 6789999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~~GR~Et~~ 527 (540)
|++|+++.|++..+++|+|..+.++|-|++|-
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 99999999999999999999999999998743
No 47
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.85 E-value=5.1e-08 Score=90.33 Aligned_cols=104 Identities=22% Similarity=0.287 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC---
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD--- 488 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD--- 488 (540)
..|++++|..+|+++++..|+. +.++.++|.++. ..|++++|+.+|++|++++|++..++.++|.++.. .|+
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~ 124 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RGEKAE 124 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChHh
Confidence 3499999999999999987763 468999999988 49999999999999999999999999999987654 455
Q ss_pred -----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 489 -----------LWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 489 -----------~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
+++|++++++++.++|++ +......+...|+.
T Consensus 125 a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 125 EAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 688999999999999998 33445555555553
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.84 E-value=2e-08 Score=75.86 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW 518 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~ 518 (540)
+++++|..+.. .|++++|+.+++++++..|++..++..+|.++.. .+++++|+.+|++++...|.+..++..+|.++.
T Consensus 2 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYK-LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 56788998884 9999999999999999999999999999998765 688999999999999999999999999999999
Q ss_pred HcCCCccc
Q 009204 519 NTGGEETC 526 (540)
Q Consensus 519 ~~GR~Et~ 526 (540)
..|+++.+
T Consensus 80 ~~~~~~~a 87 (100)
T cd00189 80 KLGKYEEA 87 (100)
T ss_pred HHHhHHHH
Confidence 99997754
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.82 E-value=1e-08 Score=101.03 Aligned_cols=110 Identities=22% Similarity=0.240 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEE--PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalD--P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
..++++++...++++.... |.++..+..+|.++. ..|+.++|+++|++||+++|+|++++..++.++.. .|++++|
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~ 199 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEA 199 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHH
Confidence 3488999999999987765 778899999999888 49999999999999999999999999999987754 6889999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
.+.+++..+..|+++..+..+|.++..+|++++|
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 9999999998899999999999999999998754
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.3e-08 Score=107.61 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
+++++|..+|++||++||....+|.-+|.=+.+ +++...|++.|++|++++|.|-.+|+.+|..+ ...+-+.=|+-||
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY-eim~Mh~YaLyYf 421 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAY-EIMKMHFYALYYF 421 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHH-HHhcchHHHHHHH
Confidence 567888888888888888888888877876664 77778888888888888888888888888764 4566677788888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
++|+++.|+++..|..+|.+|-.+++.++
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHH
Confidence 88888888888888888888888877653
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.2e-08 Score=107.71 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
.+-..|...|++|+.++|.|-.+|+.+|++|. .++.+.=|+-||++|++..|+|+..|..||..+ ...++.++|+.+|
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY-~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECY-EKLNRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH-HHhccHHHHHHHH
Confidence 56688999999999999999999999999988 699999999999999999999999999999976 5578999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
.+|+...-.+..++..+|.++-+.++.++|
T Consensus 456 krai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 456 KRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999998754
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=4.9e-08 Score=93.05 Aligned_cols=111 Identities=16% Similarity=0.085 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCHHHH--------
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPL---LLLNYAQFLHLVT--------KDYDRAEECFKRAIQSDPPDAEAL-------- 475 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~---allNLA~~L~~~~--------GD~deAEe~feRALeLDPndAeAl-------- 475 (540)
..+++++|...|+++++.+|+++. +++.+|.+++. . |++++|.+.|++++..+|++..++
T Consensus 82 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 82 KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY 160 (235)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 348999999999999999999887 68888888774 4 789999999999999999997553
Q ss_pred ---------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCcccc
Q 009204 476 ---------SQYADFLWLVRKDLWAAEETYQQAMAAEPNS---SSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 476 ---------~NLA~~L~~~rGD~EEAee~feKALeLDPdn---peal~NLA~~L~~~GR~Et~~ 527 (540)
..+|.+++ .+|++++|+..|++++...|++ +.++..+|.++..+|+++++.
T Consensus 161 ~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 161 LRNRLAGKELYVARFYL-KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 23455544 4799999999999999997764 579999999999999998754
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.79 E-value=6e-08 Score=109.80 Aligned_cols=107 Identities=10% Similarity=-0.028 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.|++++|+..|++++..+|....++.++|.++. ..|++++|+++|+++++++|+++.++..++.++. ..|++++|+.+
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~ 105 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVK 105 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 489999999999999999999999999999888 5999999999999999999999999999998765 47999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
++++++.+|+++. +..+|.++..+|++++
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~ 134 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWD 134 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHCCCHHH
Confidence 9999999999999 9999999999999764
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.7e-08 Score=109.13 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=115.5
Q ss_pred ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--
Q 009204 393 RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP-- 470 (540)
Q Consensus 393 eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn-- 470 (540)
..|||+-+-.++...-+ ..+.+.+++++..|+.+++..|+.++++.-+|.+|.. ++++++|+++|.+||++.|.
T Consensus 421 i~L~pe~~~~~iQl~~a---~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-qqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 421 ISLDPENAYAYIQLCCA---LYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-QQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred hhcChhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-HHhHHHHHHHHHHHHhhccccc
Confidence 37788877777554322 3355789999999999999999999999999999995 99999999999999999999
Q ss_pred ----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 471 ----DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 471 ----dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
++..+.+-|.++.++++|+.+|+..+++|+++||..-.++..+|.+..++|+.++|
T Consensus 497 ~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred cccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence 88889999988888999999999999999999999999999999999999997653
No 55
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.8e-08 Score=110.31 Aligned_cols=123 Identities=13% Similarity=0.049 Sum_probs=105.5
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE 473 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe 473 (540)
..||++--.|--+ -.-.++|++|..||+.||..+|+|..+|+-||..|.. ..+.++|+..|+|||++.|++..
T Consensus 427 ~~DpdvQ~~LGVL------y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR 499 (579)
T KOG1125|consen 427 KIDPDVQSGLGVL------YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVR 499 (579)
T ss_pred CCChhHHhhhHHH------HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeee
Confidence 3577776655221 1223899999999999999999999999999999984 88999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCCc
Q 009204 474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPN----------SSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPd----------npeal~NLA~~L~~~GR~E 524 (540)
+.+|+|+.+.. .|.|++|.++|..||.+.+. +-.+|..|=.++...++.|
T Consensus 500 ~RyNlgIS~mN-lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 500 VRYNLGISCMN-LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred eehhhhhhhhh-hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 99999998765 79999999999999998765 1247888889999999887
No 56
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=7.5e-08 Score=98.76 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc--CCHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVR--KDLWAAEE 494 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~r--GD~EEAee 494 (540)
.+.++-..-++..|+.||+|++-|.-||.+|. ..|+++.|...|++|++++|++++++..||.+++... .+..+|..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 45677788899999999999999999999988 4999999999999999999999999999999877543 35788999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
.+++|+++||+|..+++-||..++++|++++
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~ 245 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAE 245 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHH
Confidence 9999999999999999999999999999874
No 57
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=8.5e-08 Score=99.23 Aligned_cols=144 Identities=10% Similarity=-0.026 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhchhhhhh--c--cCCHHHHHhcccccccccCCCCCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 009204 374 DLWNSVLDEALRIQEESEY--R--ILDHETMQHFVTPVTVKLEPDDYM-DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLH 448 (540)
Q Consensus 374 ~LW~~~L~eap~~q~~~~~--e--aLD~e~~~~lvapv~a~Le~d~~G-d~eeAe~lYqkALalDP~Np~allNLA~~L~ 448 (540)
..++.++..-.+.+.++.. . .++|+....+.....+.. ..+ ++++++..+.++++.+|++..+|.+.+.++.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~---~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLE---ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH---HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 3555666554444444443 2 346666655544433321 224 6899999999999999999999999998877
Q ss_pred HhcCCH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204 449 LVTKDY--DRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG 522 (540)
Q Consensus 449 ~~~GD~--deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR 522 (540)
..|+. +++..+++++|++||.+..+|.+.+.++.. .|++++|++++.++|+.||.|..+|.+.+.++...|+
T Consensus 118 -~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 118 -KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred -HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc
Confidence 47763 788999999999999999999999987754 6889999999999999999999999999999887743
No 58
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.73 E-value=5.9e-08 Score=101.07 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204 440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWN 519 (540)
Q Consensus 440 llNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~ 519 (540)
+..-|..++ ..|++++|+++|++||+++|+++.++.++|.++. ..|++++|+..+++|+.++|+++.+++++|.++..
T Consensus 5 l~~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 344577778 4999999999999999999999999999999876 47999999999999999999999999999999999
Q ss_pred cCCCcc
Q 009204 520 TGGEET 525 (540)
Q Consensus 520 ~GR~Et 525 (540)
+|++++
T Consensus 83 lg~~~e 88 (356)
T PLN03088 83 LEEYQT 88 (356)
T ss_pred hCCHHH
Confidence 999874
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=1.3e-07 Score=94.81 Aligned_cols=105 Identities=25% Similarity=0.151 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204 418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQ 497 (540)
Q Consensus 418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~fe 497 (540)
....+...++.....+|....++..+|.++.. .|++++|++.++++++++|+++.++..+|.+++. .|++++|+.+++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~ 172 (355)
T cd05804 95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEE-AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFME 172 (355)
T ss_pred CchhHHHHHhccCcCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 33444444444334455555555555555553 6666666666666666666666666666665543 556666666666
Q ss_pred HHHHhCCCCHH----HHHHHHHHHHHcCCCc
Q 009204 498 QAMAAEPNSSS----YASKYASFLWNTGGEE 524 (540)
Q Consensus 498 KALeLDPdnpe----al~NLA~~L~~~GR~E 524 (540)
+++...|.++. .+..+|.++..+|+++
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 66666553322 2345666666666654
No 60
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.72 E-value=2.5e-08 Score=82.04 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe 493 (540)
.+++++|+.+|+++++.+|. +...++++|.+++. .|++++|.+++++ ++.+|.+...+..+|..++. .|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 58999999999999999995 46678888999995 9999999999999 99999999998889988765 78999999
Q ss_pred HHHHHH
Q 009204 494 ETYQQA 499 (540)
Q Consensus 494 e~feKA 499 (540)
++|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999986
No 61
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.72 E-value=9.7e-08 Score=87.80 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHH
Q 009204 418 DYFRTDLLYQMGVAEEPNN--PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 418 d~eeAe~lYqkALalDP~N--p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEA 492 (540)
.+..+...+...++.++.+ ...++++|..+. ..|++++|+.+|++|+.+.|+. +.++.++|.++. ..|++++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA 91 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKA 91 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHH
Confidence 3566666666665677666 567788998887 5999999999999999997763 458999998765 58999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTG 521 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~G 521 (540)
+.+|++|++++|.+...+.++|.++..+|
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999444
No 62
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=7.1e-08 Score=97.42 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
|+-+.+..+..+++..+|.+..++..+|..... .|++.+|+..+++|.+++|+|.++|+.+|..|- +.|+.++|..-|
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay 157 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAY 157 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHHH-hcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHH
Confidence 677788888889888899999999889998885 999999999999999999999999999998764 689999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
.+|+++.|+++.+..|+|..|.-.|++++
T Consensus 158 ~qAl~L~~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 158 RQALELAPNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred HHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence 99999999999999999999999999875
No 63
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.70 E-value=1.7e-07 Score=78.41 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 009204 437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS---SSYA 510 (540)
Q Consensus 437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn---peal 510 (540)
+.+++..|..+.. .|++++|+++|+++++.+|++ +.++..+|.+++. .|++++|+.+|++++..+|++ +.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 4677889998884 999999999999999999987 5788899998764 789999999999999999986 6789
Q ss_pred HHHHHHHHHcCCCcc
Q 009204 511 SKYASFLWNTGGEET 525 (540)
Q Consensus 511 ~NLA~~L~~~GR~Et 525 (540)
..+|.++...|+.++
T Consensus 80 ~~~~~~~~~~~~~~~ 94 (119)
T TIGR02795 80 LKLGMSLQELGDKEK 94 (119)
T ss_pred HHHHHHHHHhCChHH
Confidence 999999999999764
No 64
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.8e-07 Score=101.95 Aligned_cols=122 Identities=20% Similarity=0.177 Sum_probs=105.1
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE 473 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe 473 (540)
+++|+.....-..++- .-..|+|..|..+|.+||+.+|+|+.+|.|.|.++. ..|.+..|+.-.+.+|++||++..
T Consensus 352 ~~~pe~A~e~r~kGne---~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNE---AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred hhChhHHHHHHHHHHH---HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHH
Confidence 4466665544443332 235699999999999999999999999999998777 699999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204 474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNT 520 (540)
Q Consensus 474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~ 520 (540)
+|..-|.++.. ..+|++|.+.|++|+++||++.++...|..++..+
T Consensus 428 gy~RKg~al~~-mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 428 AYLRKGAALRA-MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999998765 56899999999999999999999999999888764
No 65
>PLN02789 farnesyltranstransferase
Probab=98.68 E-value=6.4e-07 Score=92.79 Aligned_cols=107 Identities=12% Similarity=-0.023 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK-DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD--LWAAE 493 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G-D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD--~EEAe 493 (540)
+.+++|...+.++|+++|++..+|...+.++.. .| ++++|+.+++++++.+|++..+|++.+.++.. .++ +++++
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHH
Confidence 577899999999999999999999999999884 77 68999999999999999999999999987654 454 37899
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
.+++++++.||+|.++|.+.+.++..+|++++
T Consensus 129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999998764
No 66
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.66 E-value=1.5e-07 Score=103.09 Aligned_cols=123 Identities=13% Similarity=-0.008 Sum_probs=99.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q 009204 413 PDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV-------TKDYDRAEECFKRAIQS--DPPDAEALSQYADFLW 483 (540)
Q Consensus 413 ~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~-------~GD~deAEe~feRALeL--DPndAeAl~NLA~~L~ 483 (540)
..+.+++.+|..+|++|+++||+++.+|..++.++... ..+.++|.+..++++.+ +|.++.+|..+|....
T Consensus 352 ~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~ 431 (517)
T PRK10153 352 SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL 431 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH
Confidence 33456788999999999999999999998887755421 12456778888887775 8888988888887654
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------ccccCCCCccccC
Q 009204 484 LVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE-------TCFPLSSSQDDYN 537 (540)
Q Consensus 484 ~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E-------t~~pl~~~~~~~~ 537 (540)
..|++++|..+|++|++++| +..++..+|.++...|+.+ +|+-++|...+|.
T Consensus 432 -~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 432 -VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred -hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 57999999999999999999 5889999999999999965 5777888877763
No 67
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.65 E-value=5.9e-08 Score=75.75 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA 472 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA 472 (540)
.|++++|+.+|+++++.+|+++.++..+|.++. .+|++++|+.+|+++++++|++|
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 489999999999999999999999999999999 49999999999999999999986
No 68
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.63 E-value=5e-07 Score=83.75 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204 433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 433 DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea 509 (540)
+|..+.+++++|..+. ..|++++|..+|++|++++|+. +.++.++|.++. ..|++++|+.+|++|++.+|+++..
T Consensus 31 ~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred HhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHH
Confidence 3456677899999888 4999999999999999988764 468999998776 4799999999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 009204 510 ASKYASFLWNTGGE 523 (540)
Q Consensus 510 l~NLA~~L~~~GR~ 523 (540)
+.++|.++..+|+.
T Consensus 109 ~~~lg~~~~~~g~~ 122 (172)
T PRK02603 109 LNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHcCCh
Confidence 99999999998874
No 69
>PRK11906 transcriptional regulator; Provisional
Probab=98.59 E-value=4.2e-07 Score=98.24 Aligned_cols=107 Identities=11% Similarity=-0.014 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGV---AEEPNNPLLLLNYAQFLHLV--------TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485 (540)
Q Consensus 417 Gd~eeAe~lYqkAL---alDP~Np~allNLA~~L~~~--------~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~ 485 (540)
...++|..+|.+|+ ++||+++.+|..+|.++... ..+..+|.++.++|+++||+|+.++..+|.+++.
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~- 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL- 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Confidence 34677788888888 88888888877777654321 2345677888888888888888888888876664
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 486 rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.++++.|...|++|+.++|+.+.+++.+|.++...|+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 566888888888888888888888888888888888865
No 70
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=4.7e-07 Score=97.91 Aligned_cols=109 Identities=19% Similarity=0.106 Sum_probs=101.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe 493 (540)
...+.+++|+..++..++..|+|+..+...+.++. ..++.++|.+.+++|+.++|+.+....+||..|.+ .|++.+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHH
Confidence 34588999999999999999999999999999988 49999999999999999999999999999998875 78999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.++++.+..+|+++..|.-||..+-.+|+..
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999999999999999864
No 71
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.57 E-value=5.2e-07 Score=102.78 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=114.1
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE 473 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe 473 (540)
.|+++..+-+.- +.. .-..|++++|+..+.++|+++|.++.+|..+|.++.+ +||.++|...+-.|-.++|+|.+
T Consensus 134 ~l~~~l~~ll~e---AN~-lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~p~d~e 208 (895)
T KOG2076|consen 134 KLAPELRQLLGE---ANN-LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLNPKDYE 208 (895)
T ss_pred ccCHHHHHHHHH---HHH-HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCChH
Confidence 556666554422 111 1234999999999999999999999999999999885 99999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------ccccCCCCc
Q 009204 474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE-------TCFPLSSSQ 533 (540)
Q Consensus 474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E-------t~~pl~~~~ 533 (540)
.|..++.. ....|.+++|.-||.+||+++|.+-...+..+.++.++|++. ..+++.||.
T Consensus 209 ~W~~ladl-s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 209 LWKRLADL-SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHHHHHH-HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 99999985 566889999999999999999999999999999999999965 366676643
No 72
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.55 E-value=4.8e-07 Score=95.04 Aligned_cols=106 Identities=10% Similarity=0.109 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHcCC
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLL----LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA--EALSQYADFLWLVRKD 488 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~a----llNLA~~L~~~~GD~deAEe~feRALeLDPndA--eAl~NLA~~L~~~rGD 488 (540)
..|++++|...++++++..|++... +..+. .. ..++.+++++.++++++.+|+++ ..+..||.+++. .|+
T Consensus 275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~--~l-~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~ 350 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP--RL-KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGE 350 (409)
T ss_pred HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh--hc-CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-ccc
Confidence 4589999999999999999999853 22222 23 36888999999999999999999 889999998865 789
Q ss_pred HHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 489 LWAAEETYQ--QAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 489 ~EEAee~fe--KALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+++|.++|+ ++++.+|++.. +..+|.+++.+|+.++
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAE 388 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence 999999999 68888998766 5599999999999775
No 73
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.55 E-value=2.1e-07 Score=72.75 Aligned_cols=61 Identities=26% Similarity=0.393 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009204 451 TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK 512 (540)
Q Consensus 451 ~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~N 512 (540)
.|++++|+++|+++++.+|++.+++..+|.++.. .|++++|++++++++..+|+++.++.-
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4555555555555555555555555555554443 455555555555555555555444433
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=5.2e-07 Score=90.39 Aligned_cols=108 Identities=17% Similarity=-0.008 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~---~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
.|++++|..+++++++.+|++..++.. +..+.. ..++.+.+.+.++.....+|++..++..+|.++. ..|++++|
T Consensus 56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A 133 (355)
T cd05804 56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRA 133 (355)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHH
Confidence 489999999999999999999988764 333331 2444555555555544677888888888887765 58999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
++.++++++++|+++.++..+|++++..|++++
T Consensus 134 ~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 134 EEAARRALELNPDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999764
No 75
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.53 E-value=2.2e-07 Score=72.65 Aligned_cols=63 Identities=30% Similarity=0.364 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA 479 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA 479 (540)
.|++++|...|++++..+|+|..+++.+|.++. ..|++++|+..+++++..+|+++.++.-++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 489999999999999999999999999999999 499999999999999999999988776554
No 76
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.53 E-value=1.6e-07 Score=73.72 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK-DYDRAEECFKRAIQSDP 469 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G-D~deAEe~feRALeLDP 469 (540)
.+++++|+.+|.+||+.+|+++.+++++|.++.. +| ++++|+++|++||+++|
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 4899999999999999999999999999999884 99 79999999999999998
No 77
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.52 E-value=6.8e-07 Score=102.90 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
+.|+++.|...|+++++.+|+++.+...++.++. ..|+.++|+.++++++.-+|.....+..+|.++. ..|++++|++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aie 123 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALA 123 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHH
Confidence 3466666666666666666666433335555555 3666666666666666323333333333344433 3566666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.|+++++.+|+++.++..++.++...++.+
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGG 153 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHH
Confidence 666666666666666666666666666654
No 78
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.4e-07 Score=99.32 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
.+..+-...|.+|..+||+|+++|+..|++++ ..+++++|..-|++|++++|+++-++..++.++|. .++++++...|
T Consensus 374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~F 451 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAESMKTF 451 (606)
T ss_pred hccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45566677777777777777777777777777 47777777777777777777777777777776665 45677777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
+.++..-|+-++.+.-+|.+|..+++.+
T Consensus 452 ee~kkkFP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 452 EEAKKKFPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHhCCCCchHHHHHHHHHhhHHhHH
Confidence 7777777777777777777777777654
No 79
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.50 E-value=4.5e-07 Score=97.90 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=62.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204 432 EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA---LSQYADFLWLVRKDLWAAEETYQQAMAA 502 (540)
Q Consensus 432 lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA---l~NLA~~L~~~rGD~EEAee~feKALeL 502 (540)
.+|+++.+++|+|..|+ ..|+|++|+.+|++||+++|+++++ |+|+|.+|. ..|++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 47999999999999999 4999999999999999999999965 999998765 578999999999999997
No 80
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.49 E-value=1e-06 Score=85.53 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---
Q 009204 419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT----------KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV--- 485 (540)
Q Consensus 419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~----------GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~--- 485 (540)
|+.|.+.|+.++..||.|++.+++.|.+|.+ . .-+++|+.-|++||.++|+..+++.++|.++...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999999999987753 3 2367789999999999999999999999987542
Q ss_pred -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204 486 -------RKDLWAAEETYQQAMAAEPNSSSYASKYAS 515 (540)
Q Consensus 486 -------rGD~EEAee~feKALeLDPdnpeal~NLA~ 515 (540)
..-+++|.++|++|...+|+|..++-.|-.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 123889999999999999999988766654
No 81
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.49 E-value=7.5e-07 Score=70.52 Aligned_cols=67 Identities=27% Similarity=0.328 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009204 445 QFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKY 513 (540)
Q Consensus 445 ~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NL 513 (540)
.++. ..+++++|+++++++++++|+++.++..+|.++.. .|++++|.+.|+++++.+|+++.+..-.
T Consensus 3 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3455 47888888888888888888888888888877654 6778888888888888888877765443
No 82
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.49 E-value=1.8e-06 Score=92.20 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
+++++|+.++++..+.+|+ +..-+|.++.. .++..+|.+.++++|+.+|.+++.+...+.+|.. +++++.|+++.
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLL-MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 6899999999999999986 44557888774 8899999999999999999999999999998865 78999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcc------cccCCCCccccC
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEET------CFPLSSSQDDYN 537 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~Et------~~pl~~~~~~~~ 537 (540)
++|+.+.|++-..|+.||.+|...|+++. +.|..+..+.|-
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~ 304 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK 304 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence 99999999999999999999999999983 567666666554
No 83
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.48 E-value=1.4e-06 Score=95.56 Aligned_cols=90 Identities=16% Similarity=0.052 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAE--EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 417 Gd~eeAe~lYqkALal--DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
.+..++....++++++ +|.++.+|..+|..+. ..|++++|..+|++|++++| +..+|..+|.++. ..|++++|++
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~-~~G~~~eA~~ 474 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE-LKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH-HcCCHHHHHH
Confidence 4567788888888775 8888999999988777 59999999999999999999 5889999998765 5899999999
Q ss_pred HHHHHHHhCCCCHHH
Q 009204 495 TYQQAMAAEPNSSSY 509 (540)
Q Consensus 495 ~feKALeLDPdnpea 509 (540)
+|++|+.++|.++.+
T Consensus 475 ~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 475 AYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHhcCCCCchH
Confidence 999999999998864
No 84
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.48 E-value=2.6e-06 Score=86.17 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLW 490 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~E 490 (540)
++|++|...|++.++..|++ +.+++.+|.+++ ..|++++|..+|+++++..|++ ++++..+|.++. ..|+++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~-~~g~~~ 234 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ-DKGDTA 234 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH-HcCCHH
Confidence 78999999999999999998 579999999999 5999999999999999988875 778888898765 479999
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 009204 491 AAEETYQQAMAAEPNSSSYA 510 (540)
Q Consensus 491 EAee~feKALeLDPdnpeal 510 (540)
+|.++|+++++..|+...+-
T Consensus 235 ~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999987653
No 85
>PRK11906 transcriptional regulator; Provisional
Probab=98.47 E-value=1.2e-06 Score=94.68 Aligned_cols=114 Identities=9% Similarity=-0.005 Sum_probs=93.4
Q ss_pred cCCHHHHHhccccccccc------CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204 394 ILDHETMQHFVTPVTVKL------EPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS 467 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~L------e~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL 467 (540)
.+||+....+-....... ..+...+..+|.++-++|+++||.|+.++..+|.++.. .++++.|...|+||+.+
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L 367 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIH 367 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhc
Confidence 566666655543322111 12345678899999999999999999999999998884 88899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204 468 DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 468 DPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea 509 (540)
+|+++.+++.+|.++. ..|+.++|.+++++|++++|...-+
T Consensus 368 ~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 368 STDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred CCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchhhHH
Confidence 9999999999998765 5799999999999999999976543
No 86
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7.8e-07 Score=97.65 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHc----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Q 009204 416 YMDYFRTDLLYQMGVAE----EPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD 488 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALal----DP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD 488 (540)
++.|.+|..+|+.++.. .+.-+ ..++|+|.++. +.+.+++|+.+|++||.+.|.++.++...|.++. ..|+
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~-llgn 504 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH-LLGN 504 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH-HhcC
Confidence 45566666666666532 22211 13556666555 4666666666666666666666666666665443 3556
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009204 489 LWAAEETYQQAMAAEPNSSSYASKYASFL 517 (540)
Q Consensus 489 ~EEAee~feKALeLDPdnpeal~NLA~~L 517 (540)
++.|+++|.||+.++|++..+-.-|+.++
T Consensus 505 ld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 505 LDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 66666666666666666655544444443
No 87
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.39 E-value=3.7e-06 Score=88.39 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHcCCHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA-EALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA-eAl~NLA~~L~~~rGD~EEAee 494 (540)
.|++++|++...++.+..|+....+.-.|.++.. +|++++|.++|+++.+..|++. .+...++.++. ..|++++|.+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-RGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHH
Confidence 4889999999999998888877777777777774 8999999999999998888885 45555676655 4788999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
.+++.++.+|+++.++.-++.++..+|+.++
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999998763
No 88
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.37 E-value=4.1e-06 Score=87.99 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|+.++|...++++++. |.++.+..-|+.+ ..++.++|.+..++.++.+|+|+..+..+|.++.. .+++++|.+
T Consensus 275 ~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~~A~~ 349 (398)
T PRK10747 275 ECDDHDTAQQIILDGLKR-QYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQEASL 349 (398)
T ss_pred HCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence 348899999999999995 4466666666653 36899999999999999999999999999998764 788999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+|+++++.+|++.. +..++.++.++|+.++
T Consensus 350 ~le~al~~~P~~~~-~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 350 AFRAALKQRPDAYD-YAWLADALDRLHKPEE 379 (398)
T ss_pred HHHHHHhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence 99999999999765 4478999999999775
No 89
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5.4e-06 Score=85.30 Aligned_cols=94 Identities=21% Similarity=0.213 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT--KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~--GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
..+++..|...|++|+++.|+|++++..||.+++... .+..+|.+.|++||++||+|..++..||..+++ .|||.+|
T Consensus 168 ~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~~~~A 246 (287)
T COG4235 168 ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGDYAEA 246 (287)
T ss_pred HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHH
Confidence 3489999999999999999999999999999887433 356889999999999999999999999988775 7999999
Q ss_pred HHHHHHHHHhCCCCHHH
Q 009204 493 EETYQQAMAAEPNSSSY 509 (540)
Q Consensus 493 ee~feKALeLDPdnpea 509 (540)
...+++.++..|.+...
T Consensus 247 ~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 247 AAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHhcCCCCCch
Confidence 99999999998876554
No 90
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=7.7e-06 Score=73.99 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDL 489 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~ 489 (540)
.++...+...+++.++.+|+. ..+.+.+|..++. .|++++|...|++++...|+. +.+...+|.++.. .|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence 478889999999999999998 4677778998884 999999999999999988666 3477788988764 7899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 490 WAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 490 EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
++|+..+++ +.-.+-.+.++.-+|.++...|+.++|
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence 999999966 444556677889999999999998864
No 91
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.32 E-value=2.7e-06 Score=67.32 Aligned_cols=63 Identities=27% Similarity=0.361 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA 479 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA 479 (540)
.+++++|..+++++++++|+++.++..+|.++. ..|++++|.+.|+++++.+|+++.+....+
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 489999999999999999999999999999999 599999999999999999999998865443
No 92
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.8e-06 Score=89.39 Aligned_cols=105 Identities=18% Similarity=0.181 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHHcCC----CC-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEP----NN-----------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD 480 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP----~N-----------p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~ 480 (540)
.|+|..|...|++|+..=. .+ ..+++|+|.++. ++++|.+|+++..++|+++|+|..+++.-|.
T Consensus 221 ~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~ 299 (397)
T KOG0543|consen 221 EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQ 299 (397)
T ss_pred hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 3789999999999887522 11 126889998766 7999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204 481 FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG 522 (540)
Q Consensus 481 ~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR 522 (540)
++.. .|+|+.|...|++|++++|+|..+...+..+.....+
T Consensus 300 A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 300 ALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 8865 7999999999999999999999998888776655444
No 93
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.31 E-value=5.9e-06 Score=95.35 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|++++|..+|+++++.+|+|+.++..++.++. ..++.++|++.+++++..+|++... ..++.++. ..++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~-~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNR-ATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHH-hcchHHHHHH
Confidence 4589999999999999999999999999988777 4999999999999999999996665 44454443 3566777999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.|+++++++|++.+++..|..++.+.|-.+
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 999999999999999999999999988754
No 94
>PRK15331 chaperone protein SicA; Provisional
Probab=98.29 E-value=1.2e-05 Score=77.10 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=96.2
Q ss_pred ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204 393 RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA 472 (540)
Q Consensus 393 eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA 472 (540)
.-++++++..+-+..- ...++|++++|+..|+-....||.|++.+.+||.++. .+++|++|+..|-.|..++++|+
T Consensus 30 ~gis~~~le~iY~~Ay---~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 30 HGIPQDMMDGLYAHAY---EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred hCCCHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCC
Confidence 4667777776644221 1346799999999999999999999999999999877 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009204 473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK 512 (540)
Q Consensus 473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~N 512 (540)
...+..|..+. ..|+.++|..+|+.++. .|.+......
T Consensus 106 ~p~f~agqC~l-~l~~~~~A~~~f~~a~~-~~~~~~l~~~ 143 (165)
T PRK15331 106 RPVFFTGQCQL-LMRKAAKARQCFELVNE-RTEDESLRAK 143 (165)
T ss_pred CccchHHHHHH-HhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence 99999998765 57899999999999999 6877665543
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.8e-06 Score=91.79 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.|+|+.|..+|-.||.++|.|.-.|.|-...+. ..|+|++|.+--.+.++++|+=+.+|...|..+. ..|+|++|+..
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~-~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF-GLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH-hcccHHHHHHH
Confidence 489999999999999999999999999888777 6999999999999999999999999999999876 47999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH
Q 009204 496 YQQAMAAEPNSSSYASKYASFL 517 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L 517 (540)
|.+.++.+|+|.....+++.+.
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999998887
No 96
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.28 E-value=2.2e-06 Score=94.18 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAE--------EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAEALSQY 478 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALal--------DP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--------DPndAeAl~NL 478 (540)
..+++++|..+|++|+.+ +|.-+.++.|+|.+|+ ..|++++|+.++++|++| .|.-+..+.++
T Consensus 253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 458999999999999986 4555568999999988 699999999999999997 23334456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCccccc
Q 009204 479 ADFLWLVRKDLWAAEETYQQAMAA--------EPNSSSYASKYASFLWNTGGEETCFP 528 (540)
Q Consensus 479 A~~L~~~rGD~EEAee~feKALeL--------DPdnpeal~NLA~~L~~~GR~Et~~p 528 (540)
+.++ ..++++++|+.+|++++++ +|.-+.+..+||..|..+|+++++.+
T Consensus 332 ~~~~-~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 332 AAIL-QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred HHHH-HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 7654 5689999999999999986 22335679999999999999987654
No 97
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=2.9e-06 Score=89.03 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CHHHHHHHHHHHHHHcCCHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDP--P-DAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDP--n-dAeAl~NLA~~L~~~rGD~EEAe 493 (540)
++.+-|..+|++.|.+--.+|+++.|+|.+|. ..+++|-++..|+||+...- + -+++|+|+|.+... -||+.-|.
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA~ 415 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNLAK 415 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHHHH
Confidence 67899999999999999999999999999888 59999999999999999753 2 26789999987654 68999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
++|+-|+..||++.+++.|||.+-.+.|+.+.
T Consensus 416 rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 416 RCFRLALTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred HHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence 99999999999999999999999999999774
No 98
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=2e-06 Score=88.63 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=73.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
|.=+. ..++|.+|+..|.+||+++|+|+..|.|.|.+|.. .|.++.|++--+.||.+||.+..+|..+|.+|..+|++
T Consensus 88 GN~~m-~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLM-KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHH-HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 44455 48999999999999999999999999999998875 68999999999999999999999999999999999998
Q ss_pred cc
Q 009204 524 ET 525 (540)
Q Consensus 524 Et 525 (540)
++
T Consensus 166 ~~ 167 (304)
T KOG0553|consen 166 EE 167 (304)
T ss_pred HH
Confidence 74
No 99
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.26 E-value=7.8e-06 Score=74.05 Aligned_cols=88 Identities=22% Similarity=0.106 Sum_probs=69.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHc
Q 009204 413 PDDYMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP---DAEALSQYADFLWLVR 486 (540)
Q Consensus 413 ~d~~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPn---dAeAl~NLA~~L~~~r 486 (540)
.|..|+.++|+.+|++|++..... ..++.++|..+. ..|++++|+..+++++...|+ +..+...++..++. .
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~ 88 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-L 88 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-C
Confidence 356688899999999998875444 457888888888 489999999999999888787 77777777776664 6
Q ss_pred CCHHHHHHHHHHHHHh
Q 009204 487 KDLWAAEETYQQAMAA 502 (540)
Q Consensus 487 GD~EEAee~feKALeL 502 (540)
|++++|++.+..++.-
T Consensus 89 gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 89 GRPKEALEWLLEALAE 104 (120)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8889999988888763
No 100
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.26 E-value=3.3e-06 Score=95.24 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH--
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE-- 494 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee-- 494 (540)
++-++|.-++.+|-.++|..+..|+-.|..+. ..|.+++|.+.|.-|+.+||++......+|.++.+ .|+..-|+.
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~~ 741 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKRS 741 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHHH
Confidence 44455555666666666655555555555544 35666666666666666666666666666655443 444444444
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.+..|+++||.++++|+++|.++..+|+.+
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 566666666666666666666666666543
No 101
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.25 E-value=7.7e-06 Score=89.93 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc-----CCCC---HHHHHH
Q 009204 371 EELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE-----EPNN---PLLLLN 442 (540)
Q Consensus 371 ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal-----DP~N---p~allN 442 (540)
+.+.+..+++.-..+ -+....+++...+.+.... ....+++++|+.+|++++++ -++| +..+.|
T Consensus 301 EA~~~~e~Al~I~~~-----~~~~~~~~v~~~l~~~~~~---~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~n 372 (508)
T KOG1840|consen 301 EAEEYCERALEIYEK-----LLGASHPEVAAQLSELAAI---LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYAN 372 (508)
T ss_pred HHHHHHHHHHHHHHH-----hhccChHHHHHHHHHHHHH---HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 445555555544443 1235566777777554333 23458999999999999986 2334 568889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCH
Q 009204 443 YAQFLHLVTKDYDRAEECFKRAIQSD--------PPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA-------EPNSS 507 (540)
Q Consensus 443 LA~~L~~~~GD~deAEe~feRALeLD--------PndAeAl~NLA~~L~~~rGD~EEAee~feKALeL-------DPdnp 507 (540)
||.+++ .+|++++|+++|++||++. +.....++++|..+. ..+++.+|.+.|.+++.+ .|+-.
T Consensus 373 l~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~-~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 373 LAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE-ELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 999888 6999999999999999973 445668899998775 578899999999999886 34555
Q ss_pred HHHHHHHHHHHHcCCCcccccC
Q 009204 508 SYASKYASFLWNTGGEETCFPL 529 (540)
Q Consensus 508 eal~NLA~~L~~~GR~Et~~pl 529 (540)
..+.|||.+|..+|++|++..+
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHH
Confidence 6799999999999999976543
No 102
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.24 E-value=6e-06 Score=93.28 Aligned_cols=133 Identities=17% Similarity=0.130 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhhchhh---hhh--c--cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 009204 371 EELDLWNSVLDEALRIQEE---SEY--R--ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNY 443 (540)
Q Consensus 371 ee~~LW~~~L~eap~~q~~---~~~--e--aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNL 443 (540)
-.+.||--..+--.+.+.. ..+ | -++|.....+--.+ +.....|.+++|...|..|+.+||+++.....+
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G---~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRG---LLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhh---HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3477887666655553322 112 1 22444444442211 223466999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHH--HHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 009204 444 AQFLHLVTKDYDRAEE--CFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS 508 (540)
Q Consensus 444 A~~L~~~~GD~deAEe--~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe 508 (540)
|.++.+ .|+..-|+. .+..|+++||.++++|+++|.++ +.+||.++|.++|..|+++++.+|-
T Consensus 725 a~~lle-~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~-k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 725 AELLLE-LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF-KKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHH-hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccchHHHHHHHHHHHhhccCCCc
Confidence 999885 998888888 99999999999999999999975 5689999999999999999998774
No 103
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=4.7e-06 Score=90.16 Aligned_cols=107 Identities=22% Similarity=0.214 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
|++++|...|++||..|....++++|.|..+. .+|++++|+++|-+.-.+=-++++++..++.+| +...+..+|+++|
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiy-e~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIY-ELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhhCHHHHHHHH
Confidence 89999999999999999999999999999888 699999999999999888889999999999975 5678999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
.++..+-|++|.++..||.+|-+-|+.-.
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence 99999999999999999999988888654
No 104
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.23 E-value=5.2e-06 Score=95.56 Aligned_cols=129 Identities=22% Similarity=0.238 Sum_probs=97.3
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-- 471 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-- 471 (540)
.|||.....+++++.+.+...+...+..+..++.+|...+|+||.++..+|..++ ..|||..+...+.-|+...-+.
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHH
Confidence 5677777888888777777777788889999999999999999998888888766 4788888777777777754333
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCc
Q 009204 472 -AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS-SSYASKYASFLWNTGGEE 524 (540)
Q Consensus 472 -AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn-peal~NLA~~L~~~GR~E 524 (540)
++.++++|..++ .+||+++|..||.++++.+|++ ...++.+|..+...|+++
T Consensus 306 ~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 306 KAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 345777777655 4677888888888887777777 555667777777777765
No 105
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.23 E-value=1.3e-05 Score=84.20 Aligned_cols=89 Identities=10% Similarity=0.031 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLL-NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~all-NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
.|++++|..+|++|.+.+|++..+.. ..+.++. ..|++++|.+.++++++.+|+++.++..++.++. ..||+++|++
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~-~~gdw~~a~~ 208 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI-RTGAWSSLLD 208 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhHHHHHH
Confidence 35555555555555555554432221 1133333 2555555555555555555555555554444433 2345555555
Q ss_pred HHHHHHHhCCCC
Q 009204 495 TYQQAMAAEPNS 506 (540)
Q Consensus 495 ~feKALeLDPdn 506 (540)
.+.+..+..+.+
T Consensus 209 ~l~~l~k~~~~~ 220 (398)
T PRK10747 209 ILPSMAKAHVGD 220 (398)
T ss_pred HHHHHHHcCCCC
Confidence 555555444443
No 106
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.22 E-value=1.1e-06 Score=72.35 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=65.6
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204 451 TKDYDRAEECFKRAIQSDPP--DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 451 ~GD~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~ 527 (540)
+|++++|+.+|+++++.+|. +...+.++|.+++. .|++++|++++++ ...+|.+...++-+|.++..+|++++|-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 68999999999999999995 56677788998875 7899999999999 8899999999999999999999998753
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.2e-05 Score=88.52 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA 472 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA 472 (540)
+.+++|+.+|++||.+.|.++.+|...|.++. .+|+++.|+++|.+||.++|++.
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~-llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYH-LLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH-HhcChHHHHHHHHHHHhcCCccH
Confidence 44555555555555555555555555554444 25555555555555555555553
No 108
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.16 E-value=2.4e-06 Score=68.74 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204 436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS----D---PPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA 502 (540)
Q Consensus 436 Np~allNLA~~L~~~~GD~deAEe~feRALeL----D---PndAeAl~NLA~~L~~~rGD~EEAee~feKALeL 502 (540)
-+.++.++|.++. ..|++++|+.+|++|+++ . |.-+.++.++|.++. ..|++++|+++|++|+++
T Consensus 4 ~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 3568899999998 499999999999999976 2 223568899998765 589999999999999986
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.12 E-value=2.5e-05 Score=79.18 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 009204 436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN---SSSY 509 (540)
Q Consensus 436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd---npea 509 (540)
+....++.|..+....|++++|+..|++.++..|++ +.+++.+|.+++. .|++++|+.+|++++...|+ .+++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 456777777766434799999999999999999999 5899999998775 79999999999999998887 5778
Q ss_pred HHHHHHHHHHcCCCcc
Q 009204 510 ASKYASFLWNTGGEET 525 (540)
Q Consensus 510 l~NLA~~L~~~GR~Et 525 (540)
++.+|.++..+|++++
T Consensus 220 l~klg~~~~~~g~~~~ 235 (263)
T PRK10803 220 MFKVGVIMQDKGDTAK 235 (263)
T ss_pred HHHHHHHHHHcCCHHH
Confidence 9999999999999874
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=6.3e-06 Score=92.74 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.++|.++.++++..++++|-....|+++|.+.. ..++++.|.++|.+.+.++|++.++|+|++..+.. .++-.+|-..
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHHH
Confidence 378888888888888888888888888888776 48888888889999999999998888888887654 5778888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+.+|++-+-++...|.||-++....|..++
T Consensus 576 l~EAlKcn~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence 888888888888888888888888888764
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=3.1e-05 Score=78.96 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
|++++|+++|...|+.||.|..++----.++. .+|+.-+|++.+..-++.=++|.++|..++.+|.. .|++++|.-||
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHHHHHHH
Confidence 66777777777777777777666553322334 46666677777777777777777777777776553 56777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
++.+-..|.++.++..||.+++-+|..
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 777777777777777777777766653
No 112
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=2.6e-05 Score=84.55 Aligned_cols=113 Identities=22% Similarity=0.177 Sum_probs=92.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC----
Q 009204 413 PDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD---- 488 (540)
Q Consensus 413 ~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD---- 488 (540)
....|+.++|..+|.+.-.+--++.++++.+|.+|. ...+..+|+++|.++..+=|+||.++..||.+| .+.||
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dly-dqegdksqa 611 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLY-DQEGDKSQA 611 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh-hcccchhhh
Confidence 345588888888888776666677888888888777 488888888888888888888888888888753 44443
Q ss_pred ------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204 489 ------------------------------LWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 489 ------------------------------~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~ 527 (540)
.++|+.||++|--+.|+....-.-.|.++.+.|.|..+|
T Consensus 612 fq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 612 FQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 688999999999999999998899999999999998765
No 113
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.05 E-value=6.3e-05 Score=68.23 Aligned_cols=87 Identities=20% Similarity=0.133 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Q 009204 438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN---SSSYAS 511 (540)
Q Consensus 438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd---npeal~ 511 (540)
.+++++|.++- ..|+.++|+.+|++|++...+. ..++..+|..+. ..|++++|+..+++++...|+ +.....
T Consensus 2 ~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 57889999877 6999999999999999986555 458889999876 579999999999999999898 888899
Q ss_pred HHHHHHHHcCCCccc
Q 009204 512 KYASFLWNTGGEETC 526 (540)
Q Consensus 512 NLA~~L~~~GR~Et~ 526 (540)
-+|.++...|+++++
T Consensus 80 f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 80 FLALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHHCCCHHHH
Confidence 999999999998864
No 114
>PRK15331 chaperone protein SicA; Provisional
Probab=98.02 E-value=1.5e-05 Score=76.42 Aligned_cols=92 Identities=14% Similarity=-0.056 Sum_probs=82.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009204 432 EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS 511 (540)
Q Consensus 432 lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~ 511 (540)
+.++.-+..+.+|.-++. .|++++|+..|+-...+||.+++.+..||.++ +.+++|++|+..|..|..+++++|...+
T Consensus 32 is~~~le~iY~~Ay~~y~-~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~-Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYN-QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC-QLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 345555677788888885 99999999999999999999999999999875 5678999999999999999999999999
Q ss_pred HHHHHHHHcCCCcc
Q 009204 512 KYASFLWNTGGEET 525 (540)
Q Consensus 512 NLA~~L~~~GR~Et 525 (540)
..|.++..+|+.+.
T Consensus 110 ~agqC~l~l~~~~~ 123 (165)
T PRK15331 110 FTGQCQLLMRKAAK 123 (165)
T ss_pred hHHHHHHHhCCHHH
Confidence 99999999999763
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00011 Score=75.20 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC--CHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK--DLWAAEE 494 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG--D~EEAee 494 (540)
|.-.+|++..-.-+...++|.++|..++.+|. ..|+|++|.-||++.+-+.|.++..+..||.+++...| +++-|.+
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66779999999999999999999999999988 59999999999999999999999999999998876544 6888999
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q 009204 495 TYQQAMAAEPNSSSYASKYA 514 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA 514 (540)
||.+|++++|.+...++.+-
T Consensus 213 yy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHhChHhHHHHHHHH
Confidence 99999999998887765543
No 116
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.96 E-value=2.1e-05 Score=83.18 Aligned_cols=100 Identities=22% Similarity=0.180 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
.+|.|++|+.||-++++.+|.|+..+.|.|.+|+ +.+.|..|+.-...||.+|..+..+|...+..-.. .|...+|.+
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~EAKk 186 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNMEAKK 186 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 4589999999999999999999999999999988 59999999999999999999999999999887654 688999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH
Q 009204 495 TYQQAMAAEPNSSSYASKYASF 516 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~ 516 (540)
-++.++++.|++-+..-.|+.+
T Consensus 187 D~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 187 DCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hHHHHHhhCcccHHHHHHHHHh
Confidence 9999999999988876665543
No 117
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.91 E-value=5.7e-05 Score=87.29 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNN-PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDLWAA 492 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~N-p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~EEA 492 (540)
|+|++|..+|.++++.+|++ ...++.+|+++. ..|+++.|+.+|++.++..|++.+++.-+|.++... ....++|
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 45555555555555555555 444555555544 255555555555555555555555555555433221 0123455
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFL 517 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L 517 (540)
..++.++++..|.+.++|..+|.+|
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHH
Confidence 5555555555555555555555443
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=8.9e-05 Score=86.34 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=86.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCCHH
Q 009204 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--------------------DPPDAE 473 (540)
Q Consensus 414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--------------------DPndAe 473 (540)
+..|++++|.+.|+++|+.||+|+.+++|||.+|.. . ++++|++++++|++. +|++.+
T Consensus 127 dk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 127 AKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred HHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccch
Confidence 345899999999999999999999999999999885 6 999999999999873 566555
Q ss_pred HHHHHHH-------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 474 ALSQYAD-------------------FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 474 Al~NLA~-------------------~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.+..+-. -++...+++++++++++.+++.+|+|..++..++.+|. +.|.
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~ 272 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYK 272 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHcc
Confidence 4222111 12334568999999999999999999999999999987 4443
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.90 E-value=4.6e-05 Score=88.62 Aligned_cols=101 Identities=10% Similarity=-0.000 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-------------------HHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA-------------------EALS 476 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA-------------------eAl~ 476 (540)
.+++++|.+.++.+++.+|+...+|+.+|.+++ ..+++.+|... +++.+-+.+. .++.
T Consensus 44 ~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~ 120 (906)
T PRK14720 44 ENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR 120 (906)
T ss_pred cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence 356666666666666666666666666666444 35555444443 4444444443 5666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204 477 QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNT 520 (540)
Q Consensus 477 NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~ 520 (540)
.+|.+ +...|+.++|...|++++++||+|+.++.+||.+|...
T Consensus 121 ~LA~~-Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 121 TLAEA-YAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred HHHHH-HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 66653 34456666666666666666666666666666666555
No 120
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.89 E-value=4e-05 Score=85.59 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=114.1
Q ss_pred CChHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhccccccc----ccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 009204 368 MNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTV----KLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNY 443 (540)
Q Consensus 368 ~~~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a----~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNL 443 (540)
+++.|-.++.+++.---.=|-..+...++ .+++.+..-++. -|...-.|+.++|..+.+.++..|+...-.|..|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~-~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIK-QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 45567778888876544433322221111 122222111110 1112234888999999999999999988889889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
|.++. ..++|++|+++|+.|+.++|+|-.+|..++.+- .+.+|++.....-.+.+++.|.+-..|..+|..+.-.|.+
T Consensus 82 gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ-~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ-IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 98666 589999999999999999999999999888754 4567899888888999999999888899999988888888
Q ss_pred cccccC
Q 009204 524 ETCFPL 529 (540)
Q Consensus 524 Et~~pl 529 (540)
..+.++
T Consensus 160 ~~A~~i 165 (700)
T KOG1156|consen 160 KMALEI 165 (700)
T ss_pred HHHHHH
Confidence 876654
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=1.9e-05 Score=88.94 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=80.9
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009204 425 LYQMGVAE-EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAE 503 (540)
Q Consensus 425 lYqkALal-DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLD 503 (540)
+|++|+++ +-.++.+...+|...+ ..++|.+|.++++++++++|-....|+++|.+.++ .+++.+|.++|.+++.++
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLIL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcC
Confidence 44444443 1223333344444344 36899999999999999999999999999998765 678999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCccccc
Q 009204 504 PNSSSYASKYASFLWNTGGEETCFP 528 (540)
Q Consensus 504 Pdnpeal~NLA~~L~~~GR~Et~~p 528 (540)
|++.++|.|++..|...|+..++|-
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHH
Confidence 9999999999999999999876543
No 122
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.86 E-value=2.8e-05 Score=57.68 Aligned_cols=41 Identities=32% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204 438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA 479 (540)
Q Consensus 438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA 479 (540)
.++..+|.++.. .|++++|+++|+++|+.+|+|++++..||
T Consensus 2 ~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 456666766663 77777777777777777777777766665
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=9.6e-05 Score=66.89 Aligned_cols=83 Identities=25% Similarity=0.337 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE 491 (540)
..|++++|...|++++...|++ +.+.+.+|.++.. .|++++|+..+++ +.-.+-.+.++...|.++. ..|++++
T Consensus 60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~-~~g~~~~ 136 (145)
T PF09976_consen 60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYDEALATLQQ-IPDEAFKALAAELLGDIYL-AQGDYDE 136 (145)
T ss_pred HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHH-HCCCHHH
Confidence 4599999999999999988765 3577889999884 9999999999966 4445566778888898876 4899999
Q ss_pred HHHHHHHHH
Q 009204 492 AEETYQQAM 500 (540)
Q Consensus 492 Aee~feKAL 500 (540)
|...|++|+
T Consensus 137 A~~~y~~Al 145 (145)
T PF09976_consen 137 ARAAYQKAL 145 (145)
T ss_pred HHHHHHHhC
Confidence 999999985
No 124
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=3.9e-05 Score=82.38 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH------------HHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ------------YADFL 482 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~N------------LA~~L 482 (540)
..+++++|...--..+++|+.|.++++--|.+++ ...+.++|..+|+++|.++|++.+.-.. -|.-+
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 3488999999999999999999999998898888 6999999999999999999999765332 22222
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCCcc
Q 009204 483 WLVRKDLWAAEETYQQAMAAEPNSSS----YASKYASFLWNTGGEET 525 (540)
Q Consensus 483 ~~~rGD~EEAee~feKALeLDPdnpe----al~NLA~~L~~~GR~Et 525 (540)
+ ..|+|.+|.++|..||.+||++.. .+.|.|.+...+||..+
T Consensus 260 f-k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e 305 (486)
T KOG0550|consen 260 F-KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE 305 (486)
T ss_pred h-hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence 3 258899999999999999997654 58899999999999864
No 125
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.00017 Score=75.89 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=94.1
Q ss_pred CHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009204 396 DHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPL-----LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP 470 (540)
Q Consensus 396 D~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~-----allNLA~~L~~~~GD~deAEe~feRALeLDPn 470 (540)
.+.+.+++.+...+. .+|++|+..-++..++.|++-. .+..||+.+. ...+.++|...+++|++.||+
T Consensus 140 a~~AlqqLl~IYQ~t------reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 140 AEGALQQLLNIYQAT------REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKK 212 (389)
T ss_pred hHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCcc
Confidence 345666665544443 6789999999888888776543 3444555444 367889999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCcc
Q 009204 471 DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS-SSYASKYASFLWNTGGEET 525 (540)
Q Consensus 471 dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn-peal~NLA~~L~~~GR~Et 525 (540)
+..+-..+|.+.. .+|+|++|++.++.+++.||++ +++...|..+|.++|+.++
T Consensus 213 cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 213 CVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred ceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9998888998765 5789999999999999999975 4678888889999998764
No 126
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.00015 Score=71.67 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHcCCHHHH
Q 009204 416 YMDYFRTDLLYQMGVA-EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD--AEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALa-lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd--AeAl~NLA~~L~~~rGD~EEA 492 (540)
.|++.+|..+|++++. +..+|+..++.+|+..+. .+++..|...+++..+.+|.. ++.+..+|..|. ..|+++.|
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~A 179 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADA 179 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhH
Confidence 4999999999999998 578899999999999995 999999999999999999865 556777888775 47899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+..|+.|+.-.|+ +.+...|+..|..+||.++
T Consensus 180 esafe~a~~~ypg-~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 180 ESAFEVAISYYPG-PQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhH
Confidence 9999999999987 6778889999999998764
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.81 E-value=0.00026 Score=77.12 Aligned_cols=87 Identities=22% Similarity=0.109 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.++.++|.+.+++++.++|+.+.+..+||++|. ..|++++|+.++++.+.-+|+|+..|..||..+.. .|+..+|...
T Consensus 353 ~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~~a~~A 430 (484)
T COG4783 353 ANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRAEALLA 430 (484)
T ss_pred cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchHHHHHH
Confidence 478999999999999999999999999999999 59999999999999999999999999999997654 4555555555
Q ss_pred HHHHHHhCC
Q 009204 496 YQQAMAAEP 504 (540)
Q Consensus 496 feKALeLDP 504 (540)
+-++..++-
T Consensus 431 ~AE~~~~~G 439 (484)
T COG4783 431 RAEGYALAG 439 (484)
T ss_pred HHHHHHhCC
Confidence 555544443
No 128
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.80 E-value=3.9e-05 Score=83.22 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=53.7
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCCcc
Q 009204 467 SDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY---ASKYASFLWNTGGEET 525 (540)
Q Consensus 467 LDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea---l~NLA~~L~~~GR~Et 525 (540)
.+|+++++++|+|..|+. .|+|++|+.+|++|++++|+++++ |+|+|.+|..+|+.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dE 130 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKK 130 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 589999999999998875 799999999999999999999965 9999999999999764
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.79 E-value=7.4e-05 Score=83.55 Aligned_cols=106 Identities=13% Similarity=0.042 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
++|....+..++.|+..|++++.+.-.|..+. ..|+.++|..+-+.++..|+....-|.-||.+. ..-++|++|+.+|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~-R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ-RSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHH-hhhhhHHHHHHHH
Confidence 78999999999999999999999999999888 599999999999999999999999999999754 4567899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
+.|+.++|+|-.+|..++.+..++|+++
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999876
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.76 E-value=0.00034 Score=69.84 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHH----
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLL---LNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLV---- 485 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~al---lNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~---- 485 (540)
.|++++|...|++++...|..+.+. +++|.+++ ..+++++|..+|++.++.+|+++. +++.+|......
T Consensus 45 ~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 45 DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA 123 (243)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence 4899999999999999999988765 78899989 599999999999999999999865 566666432111
Q ss_pred ----------cCC---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCCc
Q 009204 486 ----------RKD---LWAAEETYQQAMAAEPNSSSY-----------------ASKYASFLWNTGGEE 524 (540)
Q Consensus 486 ----------rGD---~EEAee~feKALeLDPdnpea-----------------l~NLA~~L~~~GR~E 524 (540)
..| ..+|+..|++.++.-|+...+ -+..|.+|++.|++.
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 012 356889999999999988753 244566777777764
No 131
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.71 E-value=3.2e-05 Score=55.37 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=14.3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 461 FKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 461 feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
|++||+++|+++.+|++||.++. ..|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhh
Confidence 44444444444444444444433 23444444
No 132
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.70 E-value=3.4e-05 Score=55.21 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009204 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEE 459 (540)
Q Consensus 425 lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe 459 (540)
+|++||+++|+|+.+|++||.+|.. .|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence 4899999999999999999999994 999999973
No 133
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.67 E-value=0.00051 Score=79.10 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=90.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe 493 (540)
++.|+.+++......|-.++|.|.+.|.-+|.... .+|.+++|.-||.|||+++|.+-......+.++ +..|++.+|.
T Consensus 184 EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~-~~~G~~~~Am 261 (895)
T KOG2076|consen 184 EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLY-QKTGDLKRAM 261 (895)
T ss_pred HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHhChHHHHH
Confidence 46699999999999999999999999999999777 599999999999999999999999999999854 5689999999
Q ss_pred HHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCC
Q 009204 494 ETYQQAMAAEPNSS-----SYASKYASFLWNTGGE 523 (540)
Q Consensus 494 e~feKALeLDPdnp-----eal~NLA~~L~~~GR~ 523 (540)
+.|+++++++|... +.-..+++.+...++.
T Consensus 262 ~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 262 ETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999211 1223445555555544
No 134
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00016 Score=77.78 Aligned_cols=108 Identities=19% Similarity=0.103 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNP----LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW 490 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np----~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~E 490 (540)
..|++.+|.++|..||.+||+|. .+|.|.|.+.. ..|+.++|+.--+.|+.|||....++..-|..+. ..++++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l-~le~~e 338 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHL-ALEKWE 338 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH-HHHHHH
Confidence 55999999999999999999965 46788888877 5999999999999999999999999999998765 468899
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCc
Q 009204 491 AAEETYQQAMAAEPN--SSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 491 EAee~feKALeLDPd--npeal~NLA~~L~~~GR~E 524 (540)
+|++.|++|+++.-+ .-..+......|.+..|.+
T Consensus 339 ~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh
Confidence 999999999998766 4455566666666555644
No 135
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.67 E-value=9.4e-05 Score=54.85 Aligned_cols=43 Identities=19% Similarity=0.082 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204 472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515 (540)
Q Consensus 472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~ 515 (540)
|+++..+|.++. ..|++++|+++|+++++.+|+++.+|..||.
T Consensus 1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999876 4899999999999999999999999999875
No 136
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00012 Score=77.26 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
+++++|.++|+.+++++|.|.++..-.|.-++ ..++.+-|..||+|.|++--.+++.+.|+|..++ ..++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHH
Confidence 67888889999999999999888877777777 5888899999999999998889999999987665 457799999999
Q ss_pred HHHHHhCC---CCHHHHHHHHHHHHHcCCCc---ccccCCCC
Q 009204 497 QQAMAAEP---NSSSYASKYASFLWNTGGEE---TCFPLSSS 532 (540)
Q Consensus 497 eKALeLDP---dnpeal~NLA~~L~~~GR~E---t~~pl~~~ 532 (540)
++|+...- .-+++|+|+|.+....|+.- .||-+.=.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 99988743 35678999999998888864 47776533
No 137
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.58 E-value=0.00033 Score=71.83 Aligned_cols=89 Identities=22% Similarity=0.223 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Q 009204 418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL-WAAEETY 496 (540)
Q Consensus 418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~-EEAee~f 496 (540)
.+.+|.-.|++.....|.++.+++.+|.+... +|++++|++.+++|++.+|++++++.|+..+.. ..|+. +++.+++
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~-~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSL-HLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH-HTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HhCCChhHHHHHH
Confidence 34444444444433334444444444444442 444444544444444444444444444443322 22322 3444444
Q ss_pred HHHHHhCCCCHH
Q 009204 497 QQAMAAEPNSSS 508 (540)
Q Consensus 497 eKALeLDPdnpe 508 (540)
.+....+|+++.
T Consensus 260 ~qL~~~~p~h~~ 271 (290)
T PF04733_consen 260 SQLKQSNPNHPL 271 (290)
T ss_dssp HHCHHHTTTSHH
T ss_pred HHHHHhCCCChH
Confidence 444444444443
No 138
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.56 E-value=0.0022 Score=53.76 Aligned_cols=104 Identities=25% Similarity=0.330 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHcCCHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEP---NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP-DAEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP---~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn-dAeAl~NLA~~L~~~rGD~EE 491 (540)
.+++++|...|++++..+| .....+..++..+. ..+++++|...+.+++...+. ...++..++..+. ..+++++
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 220 (291)
T COG0457 143 LGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEE 220 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHH
Confidence 3667777777777766666 34444445554444 366777777777777777777 5666666666543 3556777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204 492 AEETYQQAMAAEPNSSSYASKYASFLWNTG 521 (540)
Q Consensus 492 Aee~feKALeLDPdnpeal~NLA~~L~~~G 521 (540)
|..++.+++...|.....+..++..+...+
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 777777777777776566666666665444
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.53 E-value=0.00044 Score=80.49 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------------
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW------------- 483 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~------------- 483 (540)
.+...|...|-+++++||..+.++.-+|.+|.. --|..+|.++|++|.++||.++++....+..+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 346778888888888888888888888888775 448888888888888888888876655443221
Q ss_pred ----------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 484 ----------------------LVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 484 ----------------------~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
...++.-.|+..|+.|++.+|.+...|..+|.+|...||+..+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehH
Confidence 1125678899999999999999999999999999999999853
No 140
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.53 E-value=0.00015 Score=84.24 Aligned_cols=150 Identities=15% Similarity=0.023 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhhchh-hhhh----ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204 372 ELDLWNSVLDEALRIQE-ESEY----RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQF 446 (540)
Q Consensus 372 e~~LW~~~L~eap~~q~-~~~~----eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~ 446 (540)
|-..|.-+...+.+.-+ +... ..+|+.....|...+...- +..+..+|.++|++|..+||.+.++....+..
T Consensus 459 e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYr---d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adt 535 (1238)
T KOG1127|consen 459 ENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYR---DSDDMKRAKKCFDKAFELDATDAEAAAASADT 535 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Confidence 34445555555544221 1111 2457777777766654442 23378999999999999999999887765554
Q ss_pred HHH-----------------------------------hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204 447 LHL-----------------------------------VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 447 L~~-----------------------------------~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE 491 (540)
+.+ ..+++-+|...|+-|++.+|+|.+.|..+|.+|.. .|++..
T Consensus 536 yae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~ 614 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSH 614 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceeh
Confidence 331 23556678999999999999999999999998764 899999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
|++.|.||..++|.+....+.-|......|+|++
T Consensus 615 AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 615 ALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred HHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999864
No 141
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.0011 Score=67.96 Aligned_cols=94 Identities=21% Similarity=0.196 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDL 489 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~ 489 (540)
.|+|..|+..|+.-|+..|+.+ .+++.||..++ .+|++++|...|.++++-.|++ ++++..+|..+.. .|+.
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~~~ 231 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LGNT 231 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hcCH
Confidence 4789999999999999988864 68888999888 5999999999999999987766 5789999987764 6789
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 009204 490 WAAEETYQQAMAAEPNSSSYAS 511 (540)
Q Consensus 490 EEAee~feKALeLDPdnpeal~ 511 (540)
++|-..|++.++.-|+.+.+-.
T Consensus 232 d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999998876643
No 142
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.51 E-value=0.0018 Score=71.74 Aligned_cols=151 Identities=22% Similarity=0.231 Sum_probs=100.9
Q ss_pred hHHHHHHH-HHHHHHhhchhhhhh-c-----cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 009204 370 KEELDLWN-SVLDEALRIQEESEY-R-----ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLN 442 (540)
Q Consensus 370 ~ee~~LW~-~~L~eap~~q~~~~~-e-----aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allN 442 (540)
.+|.-|+. .++.++.+.++++.. + -+|.-.....-+-...+ .|++++|+..|+..|..||+|...|..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~k-----Lg~~~eA~~~y~~Li~rNPdn~~Yy~~ 77 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLK-----LGRKEEAEKIYRELIDRNPDNYDYYRG 77 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35666655 888888888877655 2 45666666664433333 499999999999999999999999988
Q ss_pred HHHHHHHhc----CCHHHHHHHHHH----------------------------------HHH------------------
Q 009204 443 YAQFLHLVT----KDYDRAEECFKR----------------------------------AIQ------------------ 466 (540)
Q Consensus 443 LA~~L~~~~----GD~deAEe~feR----------------------------------ALe------------------ 466 (540)
|..++.... .+.+.-.+.|++ .|.
T Consensus 78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 78 LEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPE 157 (517)
T ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChh
Confidence 888762111 122221222221 111
Q ss_pred -----------------c------------CCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204 467 -----------------S------------DPPDAE--ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515 (540)
Q Consensus 467 -----------------L------------DPndAe--Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~ 515 (540)
. +|.... +++.+|. ++...|++++|++++++||+..|..++.+...|.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAq-hyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQ-HYDYLGDYEKALEYIDKAIEHTPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 0 111111 2233454 3445789999999999999999999999999999
Q ss_pred HHHHcCCCccc
Q 009204 516 FLWNTGGEETC 526 (540)
Q Consensus 516 ~L~~~GR~Et~ 526 (540)
+|.+.|++++|
T Consensus 237 ilKh~G~~~~A 247 (517)
T PF12569_consen 237 ILKHAGDLKEA 247 (517)
T ss_pred HHHHCCCHHHH
Confidence 99999997653
No 143
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.50 E-value=0.00013 Score=77.36 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
|++.+|...|..|+..||++-.+++-.|.+|. .+|+-.-|+.-+.+.|++.|++..+....|.+++. +|.+++|+.-|
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~DF 129 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEADF 129 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHHH
Confidence 78999999999999999999999999998887 59999999999999999999999999999988765 78899999999
Q ss_pred HHHHHhCCCCHH---HHHHHHHH
Q 009204 497 QQAMAAEPNSSS---YASKYASF 516 (540)
Q Consensus 497 eKALeLDPdnpe---al~NLA~~ 516 (540)
++.+.-+|.+-. +...++.+
T Consensus 130 ~~vl~~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 130 DQVLQHEPSNGLVLEAQSKLALI 152 (504)
T ss_pred HHHHhcCCCcchhHHHHHHHHhH
Confidence 999999995543 44444443
No 144
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00039 Score=75.12 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------------------------------hcCCHHHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---------------------------------VTKDYDRAEECFKR 463 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~---------------------------------~~GD~deAEe~feR 463 (540)
|++++|+..|+++.-+||.+...+--||.++.. ..+++..|+.+-++
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 556666666666666666655555545544332 24566778888888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 464 AIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 464 ALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
+|+.+|++..++..-|.++. ..++.++|+..|+.|+.+.|..-+.+..|-+.|...|+..+|
T Consensus 326 ~I~~~~r~~~alilKG~lL~-~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLI-ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HhccCcccchHHHhccHHHH-hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 88888888888888887665 467888888888888888888888888888888888887664
No 145
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.49 E-value=0.0003 Score=72.11 Aligned_cols=106 Identities=15% Similarity=0.014 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK--DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G--D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe 493 (540)
.++++.|.+.++++-+.+.+...+...-|++... .| .+.+|...|+...+.-+..+..++.+|.+.. .+|++++|+
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~-~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe 221 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA-TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAE 221 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHH
Confidence 4899999999999998888766655555555442 44 5899999999987777889999999998665 589999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
+.+++|+..+|++++++.|++.+...+|+.
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999987
No 146
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00036 Score=71.01 Aligned_cols=84 Identities=23% Similarity=0.164 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
.+|+.|+.+|-+||.++|..+..+.|-|..+. ..++++.++.--++|++++||...+++.+|..+.+. ..+++|+..+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KGYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-ccccHHHHHH
Confidence 57899999999999999999999999998777 599999999999999999999999999999987764 5599999999
Q ss_pred HHHHHh
Q 009204 497 QQAMAA 502 (540)
Q Consensus 497 eKALeL 502 (540)
.+|..+
T Consensus 102 qra~sl 107 (284)
T KOG4642|consen 102 QRAYSL 107 (284)
T ss_pred HHHHHH
Confidence 999765
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.47 E-value=0.00074 Score=72.49 Aligned_cols=82 Identities=24% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
++-.+|.+.+.++|+.+|++..++...|.+|. ..++++.|+++.++|+++.|++-+.|..|+.+|. ..||++.|+..+
T Consensus 214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi-~~~d~e~ALlaL 291 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYI-QLGDFENALLAL 291 (395)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hcCCHHHHHHHH
Confidence 45689999999999999999999999999999 5999999999999999999999999999999876 589999999777
Q ss_pred HHHH
Q 009204 497 QQAM 500 (540)
Q Consensus 497 eKAL 500 (540)
..+-
T Consensus 292 Ns~P 295 (395)
T PF09295_consen 292 NSCP 295 (395)
T ss_pred hcCc
Confidence 6443
No 148
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.46 E-value=0.001 Score=62.97 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHcCCHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA----EALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA----eAl~NLA~~L~~~rGD~EE 491 (540)
.|+.+.|.+.|.++|.+-|.++.+|+|.|+.+.. +|+.++|++-+++|+++.-+.. .++...|.+ +..+|+-++
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l-yRl~g~dd~ 133 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL-YRLLGNDDA 133 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHhCchHH
Confidence 3899999999999999999999999999999885 9999999999999999975543 356666764 566899999
Q ss_pred HHHHHHHHHHhCCCC
Q 009204 492 AEETYQQAMAAEPNS 506 (540)
Q Consensus 492 Aee~feKALeLDPdn 506 (540)
|..-|+.|-++-...
T Consensus 134 AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 134 ARADFEAAAQLGSKF 148 (175)
T ss_pred HHHhHHHHHHhCCHH
Confidence 999999998875543
No 149
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0012 Score=66.23 Aligned_cols=96 Identities=23% Similarity=0.266 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPL-----LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~-----allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE 491 (540)
|+|++|..-|+.||..=|..+. +|.|.|.++. +++..+.|++-..+||+++|.+-.++...|.+| .....|++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeay-ek~ek~ee 186 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAY-EKMEKYEE 186 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH-HhhhhHHH
Confidence 8999999999999999887553 6778887777 699999999999999999999999999888765 45688999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Q 009204 492 AEETYQQAMAAEPNSSSYASKYA 514 (540)
Q Consensus 492 Aee~feKALeLDPdnpeal~NLA 514 (540)
|++-|++.++++|..-++.-..+
T Consensus 187 aleDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 187 ALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999887765444
No 150
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0007 Score=72.57 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..++|.+|+....++|.++|+|.-+++--|.++.. .|+++.|+..|++|++++|+|.++...+..+--..+...++..+
T Consensus 269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999999995 99999999999999999999999999988765444444555678
Q ss_pred HHHHHHHhCC
Q 009204 495 TYQQAMAAEP 504 (540)
Q Consensus 495 ~feKALeLDP 504 (540)
.|.+.+..-+
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 8888887654
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.39 E-value=0.0013 Score=63.31 Aligned_cols=108 Identities=22% Similarity=0.227 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHc---
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLVR--- 486 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~r--- 486 (540)
.|+|.+|...|++.+...|..+ .+.+.+|..++ ..|++++|...|++-++..|+++. +++..|...+...
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~ 96 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI 96 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence 4999999999999999988754 67888999999 599999999999999999999864 6777776554321
Q ss_pred -------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCc
Q 009204 487 -------KDLWAAEETYQQAMAAEPNSSSYA-----------------SKYASFLWNTGGEE 524 (540)
Q Consensus 487 -------GD~EEAee~feKALeLDPdnpeal-----------------~NLA~~L~~~GR~E 524 (540)
+...+|...|++.+..-|+.+.+- +..|.++++.|.+.
T Consensus 97 ~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 97 LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 224689999999999999987542 44566777766654
No 152
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.38 E-value=0.0004 Score=70.12 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=85.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 413 PDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 413 ~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
-|..|-+.-|.--|.++|+++|+-|.+++-+|..+.. .|+++.|.+.|.-.+++||.+--++.|.|..++ ..|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhh
Confidence 3455778889999999999999999999999987774 999999999999999999999999999998766 47999999
Q ss_pred HHHHHHHHHhCCCCHHH
Q 009204 493 EETYQQAMAAEPNSSSY 509 (540)
Q Consensus 493 ee~feKALeLDPdnpea 509 (540)
.+-+.+--+.||++|.-
T Consensus 153 q~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 153 QDDLLAFYQDDPNDPFR 169 (297)
T ss_pred HHHHHHHHhcCCCChHH
Confidence 99999999999999863
No 153
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.36 E-value=0.00068 Score=72.07 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009204 433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK 512 (540)
Q Consensus 433 DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~N 512 (540)
+|.+..-++.+|.-+. ..|++..|+..|..|++.||++..+++..|.+++ ..|+-..|+.-+.+.+++.|+..-+...
T Consensus 34 ~~advekhlElGk~ll-a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELL-ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 5677788888999888 5999999999999999999999999999999876 4789999999999999999999999999
Q ss_pred HHHHHHHcCCCccc
Q 009204 513 YASFLWNTGGEETC 526 (540)
Q Consensus 513 LA~~L~~~GR~Et~ 526 (540)
.|++|+.+|++|+|
T Consensus 112 Rg~vllK~Gele~A 125 (504)
T KOG0624|consen 112 RGVVLLKQGELEQA 125 (504)
T ss_pred hchhhhhcccHHHH
Confidence 99999999998853
No 154
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.35 E-value=0.00044 Score=47.26 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009204 438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD 471 (540)
Q Consensus 438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPnd 471 (540)
.++..+|.+++ ..|++++|+++|++|++++|+|
T Consensus 2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555 3666666666666666666554
No 155
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.35 E-value=0.0019 Score=60.77 Aligned_cols=93 Identities=18% Similarity=0.113 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHcCC-
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLVRKD- 488 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~rGD- 488 (540)
.|+|++|...|+......|..+ .+.+.++.+++ ..+++++|...+++-|+++|+++. +++..|...+.+ .+
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~-~~~ 100 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ-DEG 100 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH-hhh
Confidence 4899999999999999988755 57888999999 599999999999999999999976 455555544432 22
Q ss_pred --------------HHHHHHHHHHHHHhCCCCHHHH
Q 009204 489 --------------LWAAEETYQQAMAAEPNSSSYA 510 (540)
Q Consensus 489 --------------~EEAee~feKALeLDPdnpeal 510 (540)
..+|...|++.++.-|++..+-
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 6789999999999999987654
No 156
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.35 E-value=0.00032 Score=48.53 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009204 438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP 470 (540)
Q Consensus 438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPn 470 (540)
.+|+++|.++. .+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence 45666666655 366666666666666666665
No 157
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.34 E-value=0.0011 Score=62.79 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=70.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS----SYASKYASFLWN 519 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp----eal~NLA~~L~~ 519 (540)
|..+.+ .|+++.|++.|.+||.+-|..+.+|+|.+..+. ..|+.++|+.-+.+|+++.-+.. .++...|.+|..
T Consensus 50 ~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 555664 999999999999999999999999999999764 57999999999999999975543 357889999999
Q ss_pred cCCCccc
Q 009204 520 TGGEETC 526 (540)
Q Consensus 520 ~GR~Et~ 526 (540)
+|+.|.+
T Consensus 128 ~g~dd~A 134 (175)
T KOG4555|consen 128 LGNDDAA 134 (175)
T ss_pred hCchHHH
Confidence 9998753
No 158
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.34 E-value=0.00026 Score=71.43 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW 518 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~ 518 (540)
.++..|.+|- ..|-.+-|..-|.+||.+.|+-|++++.+|..+ ...|+++.|.+.|.-.+++||.+-.++.|.|..++
T Consensus 67 l~fERGvlYD-SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl-~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 67 LLFERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYL-TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHhcchhh-hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHH-HhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 3444454333 577778888889999999999999999888754 56899999999999999999999999999999999
Q ss_pred HcCCCc------ccccCCCCccccC
Q 009204 519 NTGGEE------TCFPLSSSQDDYN 537 (540)
Q Consensus 519 ~~GR~E------t~~pl~~~~~~~~ 537 (540)
.-||++ ..|.-++|++.|.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHH
Confidence 999986 3777778877663
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.29 E-value=0.0022 Score=64.13 Aligned_cols=85 Identities=12% Similarity=-0.000 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 009204 435 NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEAL---SQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS--- 508 (540)
Q Consensus 435 ~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl---~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe--- 508 (540)
..+..++..|..+.. .|++++|++.|++.+...|+.+.+. .++|..++. .+++++|+.+|++.++++|+++.
T Consensus 30 ~~~~~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQ-DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 356677778888884 9999999999999999999997764 778888775 78999999999999999998764
Q ss_pred HHHHHHHHHHHcC
Q 009204 509 YASKYASFLWNTG 521 (540)
Q Consensus 509 al~NLA~~L~~~G 521 (540)
+++.+|......+
T Consensus 108 a~Y~~g~~~~~~~ 120 (243)
T PRK10866 108 VLYMRGLTNMALD 120 (243)
T ss_pred HHHHHHHhhhhcc
Confidence 5666676654443
No 160
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.27 E-value=0.0087 Score=50.20 Aligned_cols=88 Identities=25% Similarity=0.319 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPN-NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~-Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
.++++.|...+.+++...|. ....+.+++..+. ..+++++|..++.+++...|.....+..++..+. ..+++++|..
T Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 257 (291)
T COG0457 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALE 257 (291)
T ss_pred hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHH
Confidence 47899999999999999999 6899999999888 4999999999999999999998888888888777 6788999999
Q ss_pred HHHHHHHhCCC
Q 009204 495 TYQQAMAAEPN 505 (540)
Q Consensus 495 ~feKALeLDPd 505 (540)
.+.+++..+|.
T Consensus 258 ~~~~~~~~~~~ 268 (291)
T COG0457 258 ALEKALELDPD 268 (291)
T ss_pred HHHHHHHhCcc
Confidence 99999999998
No 161
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.24 E-value=0.00025 Score=57.09 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHc----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204 415 DYMDYFRTDLLYQMGVAE----EPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQS 467 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALal----DP~N---p~allNLA~~L~~~~GD~deAEe~feRALeL 467 (540)
..|++++|+.+|++|+.+ .+++ +.++.++|.++. ..|++++|+++|++|+++
T Consensus 17 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 17 ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 459999999999999976 2232 457889999888 599999999999999986
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0019 Score=65.40 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=63.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHH
Q 009204 409 VKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA---EALSQYADFLWLV 485 (540)
Q Consensus 409 a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA---eAl~NLA~~L~~~ 485 (540)
+.+|-...++.+.|...|+.+++..|++...|..|..++. ..+|.+.|...|++++..-|.+. .+|..+..+-..
T Consensus 42 A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~- 119 (280)
T PF05843_consen 42 ALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK- 119 (280)
T ss_dssp HHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-
Confidence 3444334466666777777777777777777777777777 37777777777777777655555 456666655433
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH
Q 009204 486 RKDLWAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 486 rGD~EEAee~feKALeLDPdnpea 509 (540)
.|+++.....++++.++-|.+...
T Consensus 120 ~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 120 YGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred cCCHHHHHHHHHHHHHHhhhhhHH
Confidence 467777777777777777765443
No 163
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.0026 Score=67.14 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHcCCHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-AEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-AeAl~NLA~~L~~~rGD~EEAee 494 (540)
..++++|...+.+|++.||++..+-..+|.+... .|+|++|.+.++++++.||++ ++++..|...| ...|+.++.+.
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y-~~lg~~~~~~~ 270 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECY-AQLGKPAEGLN 270 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHhCCHHHHHH
Confidence 3688999999999999999999999999999884 999999999999999999998 45676676654 56899999999
Q ss_pred HHHHHHHhCCCCHHH
Q 009204 495 TYQQAMAAEPNSSSY 509 (540)
Q Consensus 495 ~feKALeLDPdnpea 509 (540)
++.++.+..++..-.
T Consensus 271 fL~~~~~~~~g~~~~ 285 (389)
T COG2956 271 FLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHccCCccHH
Confidence 999999988875443
No 164
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.0011 Score=67.90 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 009204 440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN---SSSYASKY 513 (540)
Q Consensus 440 llNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd---npeal~NL 513 (540)
.++-|.-++ ..|||+.|+..|..-|+.-|+. +++++.||..++. +|++++|...|..+++-.|+ -|+.++.+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 666677777 5999999999999999999988 5789999998875 79999999999999998765 56889999
Q ss_pred HHHHHHcCCCcc-cccCCCCcccc
Q 009204 514 ASFLWNTGGEET-CFPLSSSQDDY 536 (540)
Q Consensus 514 A~~L~~~GR~Et-~~pl~~~~~~~ 536 (540)
|.++.++|+.|+ |..+..-..+|
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC
Confidence 999999999886 76665444433
No 165
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.18 E-value=0.002 Score=71.44 Aligned_cols=85 Identities=28% Similarity=0.286 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW 518 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~ 518 (540)
+++-+|+.+. ..|++++|.++.++||+..|..++.|..-|.++ ...|++++|.++++.|..+|+.+-.+-...+.++.
T Consensus 196 ~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~Karil-Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARIL-KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 3345577665 488888888888888888888888888888876 45788888888888888888888888888888888
Q ss_pred HcCCCcc
Q 009204 519 NTGGEET 525 (540)
Q Consensus 519 ~~GR~Et 525 (540)
+.|+.++
T Consensus 274 Ra~~~e~ 280 (517)
T PF12569_consen 274 RAGRIEE 280 (517)
T ss_pred HCCCHHH
Confidence 8888764
No 166
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.18 E-value=0.0011 Score=64.77 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204 454 YDRAEECFKRAIQSDPPDAEALSQYADFLWLV---------RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG 522 (540)
Q Consensus 454 ~deAEe~feRALeLDPndAeAl~NLA~~L~~~---------rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR 522 (540)
++.|.+.++.+...||.|++++++.|.+|.+. ..-+++|+.-|++|+.++|+..+++.++|++|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999987654 1247889999999999999999999999999998876
No 167
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.16 E-value=0.001 Score=45.42 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204 472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506 (540)
Q Consensus 472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn 506 (540)
|+++.++|.+++. .|++++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 5688999998775 799999999999999999986
No 168
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.15 E-value=0.00051 Score=74.91 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
..|+.|...|-+||.++|+++..+.|-+.++. +.+++..|+.=+.+||+++|....+|..-|.++. ..+.+.+|..-|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHH
Confidence 67999999999999999999999999997666 6999999999999999999999999998888765 468899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGG 522 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR 522 (540)
++...+.|+++.+...+..+-....+
T Consensus 96 ~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 96 EKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 99999999999987776665544433
No 169
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.13 E-value=0.0024 Score=72.26 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
++.++|.++++++|+..|+...+|..+|+++.+ +++.+.|.+.|.+.++.=|+..-.|..++.+- +..|.+-+|...+
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~il 742 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSIL 742 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHH
Confidence 556666666666666666666666666666663 66666666666666666666666666666543 3345666677777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
++|.-.+|+++..|...-.+-.+.|..+
T Consensus 743 drarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 743 DRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 7776667777666666666655666543
No 170
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0018 Score=70.15 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe 493 (540)
....++..|.-+-+++|..+|++..++.--|.++.. .|+.++|.-.|+.|+.+.|-+-+.|..|-..|. ..|+..||.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL-A~~~~kEA~ 388 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL-AQKRFKEAN 388 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH-hhchHHHHH
Confidence 345789999999999999999999999999999885 999999999999999999999999998877665 478899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 009204 494 ETYQQAMAAEPNSSSYASKYA 514 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA 514 (540)
-.-+.++..-|+++..+--+|
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhc
Confidence 999999999999998876654
No 171
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0037 Score=68.93 Aligned_cols=97 Identities=16% Similarity=0.260 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204 418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQ 497 (540)
Q Consensus 418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~fe 497 (540)
-..+-..+|+.|+...+.|..+|.+|..++. +.+.+.+-...|.++|..+|++++.|..-|.-.+...-..+.|...|.
T Consensus 86 i~~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 86 IPNRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 3445577999999999999999999999877 577799999999999999999999999877767765555999999999
Q ss_pred HHHHhCCCCHHHHHHHHH
Q 009204 498 QAMAAEPNSSSYASKYAS 515 (540)
Q Consensus 498 KALeLDPdnpeal~NLA~ 515 (540)
++++.+|+++..|..|-.
T Consensus 165 rgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HHhhcCCCChHHHHHHHH
Confidence 999999999998765543
No 172
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.05 E-value=0.00068 Score=71.27 Aligned_cols=66 Identities=24% Similarity=0.445 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD 480 (540)
Q Consensus 414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~ 480 (540)
...|..++|..+|+.|++++|++++++..+|++... .++.-+|..||-+||.++|.+.+++.|.+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 345899999999999999999999999999999885 799999999999999999999999888665
No 173
>PLN03077 Protein ECB2; Provisional
Probab=97.04 E-value=0.0039 Score=71.53 Aligned_cols=106 Identities=11% Similarity=0.067 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204 415 DYMDYFRTDLLYQMGVAE---EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALal---DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE 491 (540)
..|.+++|..+|++..+. .| +...|..+..+|. ..|++++|++.+++. .+.|+ +.+|..+-..+ ...++.+.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac-~~~~~~e~ 675 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNAC-RIHRHVEL 675 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH-HHcCChHH
Confidence 458899999999998854 45 4567777888888 499999999999874 46665 56666666554 45788999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
|+...+++++++|+++.++..++++|...|+.++
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 9999999999999999999999999999999764
No 174
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.03 E-value=0.0012 Score=45.69 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204 472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506 (540)
Q Consensus 472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn 506 (540)
+.+|.++|.++. .+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence 468899999776 5799999999999999999974
No 175
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.01 E-value=0.0064 Score=68.95 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
..|+...|...+.+|++.+|++.++|+.--.+.+ ...++++|..+|.+|-...|. ..+|..++.+.+. .+..++|++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~-en~e~eraR~llakar~~sgT-eRv~mKs~~~er~-ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF-ENDELERARDLLAKARSISGT-ERVWMKSANLERY-LDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh-ccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHH-hhhHHHHHH
Confidence 3477888888888888888888888876555556 377888888888888876654 4567777777664 577888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
+++++++.-|+..-.|..+|.++-+.++.+
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence 888888888888888888888887777755
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.99 E-value=0.0025 Score=64.58 Aligned_cols=109 Identities=20% Similarity=0.295 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
+..+.|...|.+|++..+-...+|..+|.+-+...+|.+.|...|+++++.-|.+.+.|..|..++.. .+|.+.|...|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lf 93 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence 44789999999999777778899999999866446777779999999999999999999999998875 68999999999
Q ss_pred HHHHHhCCCCH---HHHHHHHHHHHHcCCCccc
Q 009204 497 QQAMAAEPNSS---SYASKYASFLWNTGGEETC 526 (540)
Q Consensus 497 eKALeLDPdnp---eal~NLA~~L~~~GR~Et~ 526 (540)
++++..-|... .+|..+..+=...|+.+.+
T Consensus 94 er~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v 126 (280)
T PF05843_consen 94 ERAISSLPKEKQSKKIWKKFIEFESKYGDLESV 126 (280)
T ss_dssp HHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999877655 5788888888888876643
No 177
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.99 E-value=0.0057 Score=65.67 Aligned_cols=105 Identities=16% Similarity=0.088 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
+.|++++|.+..+++++..-+.. +..-++. . ..+|...=++..++.++.+|++|..+..+|.+++. .+.+.+|.+
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~~ 349 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPR-LCRLIPR--L-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKASE 349 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChh-HHHHHhh--c-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHHH
Confidence 45889999999999999765333 3322332 2 47889999999999999999999999999997764 678999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
+|+.|++..|.. +.+.-+|+++-++|+.+.
T Consensus 350 ~leaAl~~~~s~-~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 350 ALEAALKLRPSA-SDYAELADALDQLGEPEE 379 (400)
T ss_pred HHHHHHhcCCCh-hhHHHHHHHHHHcCChHH
Confidence 999999998874 456678999999998763
No 178
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.89 E-value=0.0076 Score=64.73 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=74.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
+.++...=++..++.++..|++|.++..+|.+|+ +.+.+.+|..+|+.||...|... .+..+|.++ ...|+.++|.+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~-~~~g~~~~A~~ 382 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPSAS-DYAELADAL-DQLGEPEEAEQ 382 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHH-HHcCChHHHHH
Confidence 3477788899999999999999999999999988 69999999999999999988554 566788875 46899999999
Q ss_pred HHHHHHHh
Q 009204 495 TYQQAMAA 502 (540)
Q Consensus 495 ~feKALeL 502 (540)
.+++++.+
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 99999854
No 179
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.87 E-value=0.0027 Score=66.88 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204 443 YAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515 (540)
Q Consensus 443 LA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~ 515 (540)
.|.-.+ ..|+.++|...|+.|++++|++++++..+|.|.- ..++.-+|-.||-+|+.++|.|.+++.|.+.
T Consensus 122 ~A~~~~-~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 122 AAGRSR-KDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHH-hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344455 5999999999999999999999999999999864 4578999999999999999999999887664
No 180
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.87 E-value=0.0095 Score=67.92 Aligned_cols=110 Identities=19% Similarity=0.142 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNP-----LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW 483 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np-----~allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~ 483 (540)
..|++++|..+++++++..|... .++..+|..+. ..|++++|+.++++++.+.... ..++.++|.+++
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 35899999999999998655432 34566777777 5999999999999999864322 235566777765
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCCccc
Q 009204 484 LVRKDLWAAEETYQQAMAAEPN--------SSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 484 ~~rGD~EEAee~feKALeLDPd--------npeal~NLA~~L~~~GR~Et~ 526 (540)
..|++++|++++++++.+... ....+..+|.+++..|++++|
T Consensus 543 -~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 592 (903)
T PRK04841 543 -AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA 592 (903)
T ss_pred -HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 489999999999999986321 233456788899999998754
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.81 E-value=0.011 Score=56.89 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 009204 436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS---Y 509 (540)
Q Consensus 436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe---a 509 (540)
.+..++..|..++. .|++++|++.|++.+...|+. +.++..+|..++. .|++++|+..|++.++..|+++. +
T Consensus 4 ~~~~lY~~a~~~~~-~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQ-QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 45678888998885 999999999999999998876 4578888988775 78999999999999999998764 5
Q ss_pred HHHHHHHHHHc
Q 009204 510 ASKYASFLWNT 520 (540)
Q Consensus 510 l~NLA~~L~~~ 520 (540)
++.+|..+..+
T Consensus 82 ~Y~~g~~~~~~ 92 (203)
T PF13525_consen 82 LYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66777765544
No 182
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0067 Score=62.38 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHHc--------CCCCH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAE--------EPNNP----------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS 476 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALal--------DP~Np----------~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~ 476 (540)
..|+|++|...|+.||.. .|..+ .+++||++++. ..|+|-+++++-...|..+|++..||+
T Consensus 190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~f 268 (329)
T KOG0545|consen 190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYF 268 (329)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 448899999999998753 45554 36789999877 699999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204 477 QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 477 NLA~~L~~~rGD~EEAee~feKALeLDPdnpea 509 (540)
..|.+... .=+.++|.+-|.++++++|.-+.+
T Consensus 269 rRakAhaa-~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 269 RRAKAHAA-VWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHH
Confidence 99887654 345899999999999999976554
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.74 E-value=0.0053 Score=61.86 Aligned_cols=73 Identities=29% Similarity=0.302 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHHHc--CCCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHH
Q 009204 451 TKDYDRAEECFKRAIQS--DPPD----AEALSQYADFLWLVR-KDLWAAEETYQQAMAAE--PNS----SSYASKYASFL 517 (540)
Q Consensus 451 ~GD~deAEe~feRALeL--DPnd----AeAl~NLA~~L~~~r-GD~EEAee~feKALeLD--Pdn----peal~NLA~~L 517 (540)
..++++|+++|++|+.+ .-++ +..+.++|.++. .. |++++|+++|++|+.+- -+. ...+.++|.++
T Consensus 87 ~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 87 KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 33555555555555554 2222 224444554432 23 45555555555555541 111 12345555555
Q ss_pred HHcCCCc
Q 009204 518 WNTGGEE 524 (540)
Q Consensus 518 ~~~GR~E 524 (540)
...|+++
T Consensus 166 ~~l~~y~ 172 (282)
T PF14938_consen 166 ARLGRYE 172 (282)
T ss_dssp HHTT-HH
T ss_pred HHhCCHH
Confidence 5555554
No 184
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.68 E-value=0.0079 Score=67.57 Aligned_cols=108 Identities=10% Similarity=0.006 Sum_probs=85.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
..|..++|..+|+...+..+- +...|..+...|. ..|++++|++.+++. ...| +..+|..+...+. ..|+++.|
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~-~~g~~~~a 513 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG-REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACR-IHKNLELG 513 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH-hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH-HcCCcHHH
Confidence 458999999999998874322 3456777777788 499999999999875 3444 4556777776654 57899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
+..+++.+.++|++...+..++.+|...|+.++|
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 9999999999999988899999999999997653
No 185
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.61 E-value=0.013 Score=66.87 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CHHHHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNN------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--------DAEALSQYAD 480 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~N------p~allNLA~~L~~~~GD~deAEe~feRALeLDPn--------dAeAl~NLA~ 480 (540)
..|++++|..++++++...... ..++.++|.+++. .|++++|+.++++++.+... ....+..+|.
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3589999999999999763321 2356678888884 99999999999999996221 2334556677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCCccc
Q 009204 481 FLWLVRKDLWAAEETYQQAMAAEPN-----SSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 481 ~L~~~rGD~EEAee~feKALeLDPd-----npeal~NLA~~L~~~GR~Et~ 526 (540)
+++. .|++++|..++++++.+... ....+..+|.++...|+++++
T Consensus 582 ~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 582 LLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 7665 69999999999999886332 345567788899999987643
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.55 E-value=0.024 Score=53.46 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 009204 437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS---YA 510 (540)
Q Consensus 437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe---al 510 (540)
+..+++-|.-.. ..|+|++|++.|+.....-|-. ..+...++..++. .+++++|+..+++-|+++|+++. ++
T Consensus 10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456777788777 4999999999999999987766 4578888888876 78999999999999999998875 46
Q ss_pred HHHHHHHHHcCC
Q 009204 511 SKYASFLWNTGG 522 (540)
Q Consensus 511 ~NLA~~L~~~GR 522 (540)
+..|.....+..
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 666666665543
No 187
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.54 E-value=0.012 Score=65.09 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 009204 443 YAQFLHLVTKDYDRAEECFKRAIQSDPP--DAEALSQYADFLWLVRKDLWAAEETYQQAMAA-EPNSSSYASKYAS 515 (540)
Q Consensus 443 LA~~L~~~~GD~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~rGD~EEAee~feKALeL-DPdnpeal~NLA~ 515 (540)
+|.++. +.|+.++|++.|+..++..|. +-.++.|+...|.. .++|.++...+.|-=.. -|+.+...++-|.
T Consensus 265 LAmCar-klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 265 LAMCAR-KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHH-HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 444444 355555555555555555443 23345555544443 34555555555554222 2444444444433
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.47 E-value=0.011 Score=59.58 Aligned_cols=105 Identities=19% Similarity=0.108 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHcC-----CCC-HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC--CCC----HHHHHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEE-----PNN-PLLLLNYAQFLHLVT-KDYDRAEECFKRAIQSD--PPD----AEALSQYADFLW 483 (540)
Q Consensus 417 Gd~eeAe~lYqkALalD-----P~N-p~allNLA~~L~~~~-GD~deAEe~feRALeLD--Pnd----AeAl~NLA~~L~ 483 (540)
.++++|..+|++|+.+. |.. +.++.++|.+|. .. |++++|.++|++|+++- -+. ...+.++|.++.
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 48999999999999872 222 347788999877 46 89999999999999971 122 235667787765
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCC
Q 009204 484 LVRKDLWAAEETYQQAMAAEPNS-------SSYASKYASFLWNTGGE 523 (540)
Q Consensus 484 ~~rGD~EEAee~feKALeLDPdn-------peal~NLA~~L~~~GR~ 523 (540)
..|+|++|++.|++.....-++ ..+++..+.+++..|+.
T Consensus 167 -~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~ 212 (282)
T PF14938_consen 167 -RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY 212 (282)
T ss_dssp -HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H
T ss_pred -HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH
Confidence 4789999999999998853221 13566777888888875
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.45 E-value=0.031 Score=55.87 Aligned_cols=103 Identities=20% Similarity=0.105 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204 419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ-SDPPDAEALSQYADFLWLVRKDLWAAEETYQ 497 (540)
Q Consensus 419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe-LDPndAeAl~NLA~~L~~~rGD~EEAee~fe 497 (540)
.++..+...+.++..|.... .+.+|..+.+ .|++.+|+.+|++|+. +=.+|+..+..++...+. .+++.+|...++
T Consensus 72 P~R~~Rea~~~~~~ApTvqn-r~rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe 148 (251)
T COG4700 72 PERHLREATEELAIAPTVQN-RYRLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLE 148 (251)
T ss_pred hhHHHHHHHHHHhhchhHHH-HHHHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence 34555566677777887543 4567888885 9999999999999998 567888888889988876 588999999999
Q ss_pred HHHHhCCC--CHHHHHHHHHHHHHcCCCc
Q 009204 498 QAMAAEPN--SSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 498 KALeLDPd--npeal~NLA~~L~~~GR~E 524 (540)
+..+.+|. .|+.+.-+|..|..+|+++
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 99999984 6778889999999999987
No 190
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.016 Score=60.41 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHHHcCCHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA--DFLWLVRKDLWAAE 493 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA--~~L~~~rGD~EEAe 493 (540)
.+++.+|...|..++..+|++.++...||.++.. .|+.+.|...+...=.-..++. .+.--+ .++. +..+..+.
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~-qaa~~~~~- 222 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKA-AHGLQAQIELLE-QAAATPEI- 222 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhH-HHHHHHHHHHHH-HHhcCCCH-
Confidence 4899999999999999999999999999998884 9999998887765321111111 111011 1111 11111111
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~ 527 (540)
.-+++.+..||++.++.+.+|..|...||.++|+
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Al 256 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAAL 256 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2456677778888888888888888888877654
No 191
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.41 E-value=0.048 Score=58.58 Aligned_cols=122 Identities=21% Similarity=0.213 Sum_probs=89.9
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHH-HH
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE----EPNNPLLLLNYAQFLHLV---TKDYDRAEECFKR-AI 465 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal----DP~Np~allNLA~~L~~~---~GD~deAEe~feR-AL 465 (540)
.+++++.-.+ -|.-.+-.+|+.-..+.+..=.+ -++.+.+...||.++. . .||.++|++.+.. ..
T Consensus 138 ~ls~div~~l------llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 138 LLSPDIVINL------LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLE 210 (374)
T ss_pred hcChhHHHHH------HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHh
Confidence 4455554443 22334557788777777766555 4566777788888776 4 8999999999999 45
Q ss_pred HcCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 466 QSDPPDAEALSQYADFLWLV--------RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 466 eLDPndAeAl~NLA~~L~~~--------rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
..++.+++.+.-+|.++-.. ...+++|+.+|+|+.+++|+ .+.-.|++.+|.-.|..
T Consensus 211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHD 275 (374)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCc
Confidence 56788999999889875221 22488999999999999964 56778999999888864
No 192
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.38 E-value=0.0057 Score=42.01 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDP 469 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~feRALeLDP 469 (540)
+|..+|.++. ..|++++|.++|+++++++|
T Consensus 3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYE-QLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 4455555555 25555555555555555555
No 193
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.38 E-value=0.044 Score=65.63 Aligned_cols=105 Identities=18% Similarity=0.034 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEE-PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--DPPDAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 417 Gd~eeAe~lYqkALalD-P~Np~allNLA~~L~~~~GD~deAEe~feRALeL--DPndAeAl~NLA~~L~~~rGD~EEAe 493 (540)
|++++|.++|++..+.+ +.+...|..+...|. ..|++++|.+.|++..+. .|+ ...|..+...+. ..|++++|.
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~-k~G~~eeA~ 669 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG-HAGDLDKAF 669 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH-hCCCHHHHH
Confidence 55555555555555543 234444444444444 255555555555555543 332 333433333332 244555555
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCc
Q 009204 494 ETYQQAMAAE-PNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 494 e~feKALeLD-Pdnpeal~NLA~~L~~~GR~E 524 (540)
+++++..+.. +.+...+..+...|.+.|+.+
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 5555555432 123344445555555555544
No 194
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.36 E-value=0.015 Score=65.40 Aligned_cols=110 Identities=13% Similarity=0.012 Sum_probs=91.0
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009204 407 VTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPL-LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485 (540)
Q Consensus 407 v~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~-allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~ 485 (540)
..+-|-..-.|+...|.+|++.|+...|.... .+.++|+++. .-|-.-.|..++.++|.++-..+-.++-+|..++.
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~- 688 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA- 688 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-
Confidence 33434345669999999999999999998664 5779999887 47788899999999999998888888888887654
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204 486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLW 518 (540)
Q Consensus 486 rGD~EEAee~feKALeLDPdnpeal~NLA~~L~ 518 (540)
..+.++|++.|++|+.++|+++..-..|-.+-.
T Consensus 689 l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 578999999999999999999998766655444
No 195
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.24 E-value=0.053 Score=64.98 Aligned_cols=107 Identities=13% Similarity=0.062 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCHH
Q 009204 416 YMDYFRTDLLYQMGVA----EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD-PPDAEALSQYADFLWLVRKDLW 490 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALa----lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD-PndAeAl~NLA~~L~~~rGD~E 490 (540)
.|++++|.+.|++..+ ..|+ ...|..+-..|. ..|++++|++.|++..+.+ +.+...|+.+...+. ..|+++
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~d 631 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWD 631 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHH
Confidence 4788888888888876 3563 566666666677 4888888888888888876 456667777666554 478888
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCccc
Q 009204 491 AAEETYQQAMAA--EPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 491 EAee~feKALeL--DPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
+|++.|++..+. .|+ ...+..+...+.+.|+.++|
T Consensus 632 eAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHH
Confidence 888888888876 455 56677778888888887654
No 196
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.24 E-value=0.003 Score=66.97 Aligned_cols=89 Identities=13% Similarity=0.036 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.|+++.|+..|-.||.++|..+.+|.+.|.++. ..+....|+.-+..|++++|+.+.-|-..+... ...|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~-rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE-RLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHH-HHhhchHHHHHH
Confidence 388999999999999999999999999999887 599999999999999999999988655444433 346899999999
Q ss_pred HHHHHHhCCCC
Q 009204 496 YQQAMAAEPNS 506 (540)
Q Consensus 496 feKALeLDPdn 506 (540)
++.|.+++-+.
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 99999987653
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.044 Score=56.83 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
+.+.+|.-+|+..-...|-.+.++++.|.++.. +|++++|+..++.||..++++++++.|+-..-.....+.+--.+++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 457888999999888677789999999987774 9999999999999999999999999998776555556667778888
Q ss_pred HHHHHhCCCCHHH
Q 009204 497 QQAMAAEPNSSSY 509 (540)
Q Consensus 497 eKALeLDPdnpea 509 (540)
.+....+|.++.+
T Consensus 266 ~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 266 SQLKLSHPEHPFV 278 (299)
T ss_pred HHHHhcCCcchHH
Confidence 8888899988764
No 198
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.13 E-value=0.02 Score=64.37 Aligned_cols=106 Identities=10% Similarity=-0.037 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ--SDPPDAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe--LDPndAeAl~NLA~~L~~~rGD~EEAe 493 (540)
.|++++|.+.|++..+ | |...|+.+...|. ..|+.++|++.|++.++ +.|+.. .+..+...+. ..|+.++|.
T Consensus 373 ~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~-~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~-~~g~~~~a~ 446 (697)
T PLN03081 373 WGRMEDARNVFDRMPR--K-NLISWNALIAGYG-NHGRGTKAVEMFERMIAEGVAPNHV-TFLAVLSACR-YSGLSEQGW 446 (697)
T ss_pred CCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHh-cCCcHHHHH
Confidence 3666777777766543 2 4456666666666 37777777777777655 344433 3333333333 356777777
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCcccc
Q 009204 494 ETYQQAMAAEPN--SSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 494 e~feKALeLDPd--npeal~NLA~~L~~~GR~Et~~ 527 (540)
++|++..+..+- +...+..+..+|.+.|+.++|+
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 777776653221 2234556666777777777654
No 199
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.13 E-value=0.01 Score=40.74 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204 472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506 (540)
Q Consensus 472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn 506 (540)
+++|..+|.++. ..|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 367888998765 5899999999999999999964
No 200
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.06 E-value=0.044 Score=59.90 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHcCCHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE----ALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe----Al~NLA~~L~~~rGD~EE 491 (540)
..+.+.|+++++...+..|+.+..+..-|.++. ..|+.++|++.|++|+.....-.. .+..+++.+. ..+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHH
Confidence 467899999999999999999999999999888 599999999999999965444333 3445666544 4689999
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCC
Q 009204 492 AEETYQQAMAAEPN-SSSYASKYASFLWNTGGE 523 (540)
Q Consensus 492 Aee~feKALeLDPd-npeal~NLA~~L~~~GR~ 523 (540)
|.++|.+..+.+.- .+.+.+-.|.++...|+.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999999998664 556677788899999887
No 201
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.04 E-value=0.0071 Score=64.62 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204 442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521 (540)
Q Consensus 442 NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~G 521 (540)
.-|+-|+ ++|.|++|+.||.++|.++|.++..+.|.|..|+.. +.+..|+.--..|+.+|-.+.-++...+.+-..+|
T Consensus 102 E~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~-K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ-KSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred Hhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH-HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4577788 699999999999999999999999999999988764 57999999999999999888877777777666666
Q ss_pred CCc
Q 009204 522 GEE 524 (540)
Q Consensus 522 R~E 524 (540)
..+
T Consensus 180 ~~~ 182 (536)
T KOG4648|consen 180 NNM 182 (536)
T ss_pred hHH
Confidence 543
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.90 E-value=0.061 Score=48.23 Aligned_cols=62 Identities=26% Similarity=0.212 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204 438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALe 501 (540)
.++..++..+. ..|++++|+..+++++.++|-+-.++..+-.++. ..|+..+|++.|++..+
T Consensus 63 ~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 45666777777 4999999999999999999999999999888776 47999999999998865
No 203
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.064 Score=56.80 Aligned_cols=108 Identities=18% Similarity=0.082 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------HHH--------------
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKR----------------AIQ-------------- 466 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feR----------------ALe-------------- 466 (540)
.+|..|..+|++.-.+.|......+-+|+.++. .+.+..|...... ||.
T Consensus 58 Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 58 QEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 568888888888888888888877778888884 7777777654432 222
Q ss_pred cCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 467 SDP--PDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 467 LDP--ndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
.-| ++++...+.|-++++ .|++++|++-|+.|++..--++-..+|+|.+.++.|+++.+
T Consensus 137 Qlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasA 197 (459)
T KOG4340|consen 137 QLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASA 197 (459)
T ss_pred hccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHH
Confidence 123 567778888877764 68999999999999999999999999999999999998754
No 204
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.014 Score=59.67 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=71.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
|.-|+ ..++|+.|+.+|-+||.++|..+..+.|-+..+++ .++++.+..-=++|++++|+-...++-+|..+.....+
T Consensus 17 gnk~f-~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 17 GNKCF-IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccccc-chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34455 47789999999999999999999999999987665 78899999999999999999999999999999998887
Q ss_pred cc
Q 009204 524 ET 525 (540)
Q Consensus 524 Et 525 (540)
++
T Consensus 95 ~e 96 (284)
T KOG4642|consen 95 DE 96 (284)
T ss_pred cH
Confidence 74
No 205
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.73 E-value=0.064 Score=62.61 Aligned_cols=103 Identities=13% Similarity=-0.021 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
+++.+|.+...+.++..|+-+.+..--|..+.+ +|+.++|..+++.--...++|...+.-+-.+|- ..+++++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHH
Confidence 556666666666666666655555555555553 666666665555555555555555555554433 345566666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGG 522 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR 522 (540)
++|+..+|. -+.++.|-.++.+.+.
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence 666666666 4555555555544444
No 206
>PLN03077 Protein ECB2; Provisional
Probab=95.66 E-value=0.066 Score=61.64 Aligned_cols=104 Identities=8% Similarity=-0.105 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ--SDPPDAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe--LDPndAeAl~NLA~~L~~~rGD~EEAe 493 (540)
.|++++|...|++. +.|...|+.+...|. ..|+.++|+++|++.++ +.|+.... ..+-..+. ..|++++|.
T Consensus 537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~-~~ll~a~~-~~g~v~ea~ 609 (857)
T PLN03077 537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTF-ISLLCACS-RSGMVTQGL 609 (857)
T ss_pred cCCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHh-hcChHHHHH
Confidence 47777777777765 446677777777666 47888888888887766 35655443 22323333 357788888
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCccc
Q 009204 494 ETYQQAMAAEPN--SSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 494 e~feKALeLDPd--npeal~NLA~~L~~~GR~Et~ 526 (540)
++|++..+..+- +...+..+..+|.+.|+.++|
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 888877743221 235667777777777776654
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.037 Score=57.61 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC--CCHHHHHHHHHHHHHHcCCH
Q 009204 417 MDYFRTDLLYQMGVAEE-PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ----SDP--PDAEALSQYADFLWLVRKDL 489 (540)
Q Consensus 417 Gd~eeAe~lYqkALalD-P~Np~allNLA~~L~~~~GD~deAEe~feRALe----LDP--ndAeAl~NLA~~L~~~rGD~ 489 (540)
++|.-...+|.+.++.+ |.+|.+...++.+..+ .||.+.|+.+|++.-+ ++- +.-.++.|.+.++ ...+++
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~-lg~nn~ 268 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH-LGQNNF 268 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe-ecccch
Confidence 55666677777777766 5667777777777664 7777777777773322 221 1222444445433 335667
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 490 WAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 490 EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
..|...|.+.+..||.++.+-.|.|.++..+|+.
T Consensus 269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 7777777777777777777777777777777764
No 208
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.62 E-value=0.02 Score=35.62 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP 470 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~feRALeLDPn 470 (540)
++.++|.++.. .+++++|..+|+++++++|+
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence 45556665553 66666666666666666554
No 209
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.59 E-value=0.23 Score=49.47 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-
Q 009204 417 MDYFRTDLLYQMGVAEEPNN-PLLLLNYAQFLHLVTK--------DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVR- 486 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~N-p~allNLA~~L~~~~G--------D~deAEe~feRALeLDPndAeAl~NLA~~L~~~r- 486 (540)
.+..+|..+|++|....-.. ..+..+++.++. .| +..+|...|++|-... ++.+..++|..+....
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence 48899999999999974333 344677787665 33 4458999999999886 8888889998765432
Q ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204 487 --KDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521 (540)
Q Consensus 487 --GD~EEAee~feKALeLDPdnpeal~NLA~~L~~~G 521 (540)
.|+++|..+|++|.+... ...+++++ ++...|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 389999999999999887 78888888 666656
No 210
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.55 E-value=0.079 Score=64.34 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--DAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~rGD~EEAe 493 (540)
.+.+++|.++|++.++..-+-..+|..||.++.. +.+-++|...++|||+--|. +.+.....|.+-++ .||.+.+.
T Consensus 1543 ~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGR 1620 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGR 1620 (1710)
T ss_pred hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhH
Confidence 3678899999999999888888999999999994 88889999999999999998 78888888887765 79999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
..|+-.+..+|...+.|.-|...-..+|+.
T Consensus 1621 tlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1621 TLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence 999999999999999999988877776664
No 211
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.49 E-value=0.021 Score=60.49 Aligned_cols=90 Identities=12% Similarity=0.194 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009204 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEP 504 (540)
Q Consensus 425 lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDP 504 (540)
.|.++-...|+|+..|..|+.... +.|-+.+-...|.++++.+|.|++.|...+.+-+...++.+.+...|.++++++|
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 566666778999999999998655 6899999999999999999999999986555555567899999999999999999
Q ss_pred CCHHHHHHHHH
Q 009204 505 NSSSYASKYAS 515 (540)
Q Consensus 505 dnpeal~NLA~ 515 (540)
++|..|..|-.
T Consensus 174 ~~p~iw~eyfr 184 (435)
T COG5191 174 RSPRIWIEYFR 184 (435)
T ss_pred CCchHHHHHHH
Confidence 99999876654
No 212
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.33 E-value=0.027 Score=40.22 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQS 467 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~feRALeL 467 (540)
++.++|.++. ..|++++|+++|+++|.+
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 3566777666 377777777777775443
No 213
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.27 E-value=0.34 Score=50.36 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204 423 DLLYQMGVAEEPNNPLLLLNYAQFLHLVT-----------KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 423 e~lYqkALalDP~Np~allNLA~~L~~~~-----------GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE 491 (540)
...|.+.++.+|+|..+|..|..+-.... .-.++.+.+|++||+.+|++...+..|-.... ...+.++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHH
Confidence 45688899999999999999887543211 11467788999999999999988877766544 3567888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204 492 AEETYQQAMAAEPNSSSYASKYASFLWN 519 (540)
Q Consensus 492 Aee~feKALeLDPdnpeal~NLA~~L~~ 519 (540)
..+-+++++..+|+++..|..|-.+...
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 8899999999999999998877665443
No 214
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.19 Score=52.31 Aligned_cols=105 Identities=12% Similarity=0.050 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLH---LVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~---~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe 493 (540)
.+++-|++..+++...+-+. .+..+|..+. ...+....|.-+|+.-=+.-|..+..++..|.+.. ..+++++|+
T Consensus 151 ~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe 227 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHH
Confidence 56788888888888876643 3334444332 12456889999999998877778888888887765 578999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
..++.|+..++++|+.+.|+-..-..+|...
T Consensus 228 ~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 228 SLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 9999999999999999999999999999874
No 215
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.19 Score=56.80 Aligned_cols=102 Identities=17% Similarity=0.089 Sum_probs=83.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH------HHHHHHHcC
Q 009204 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQY------ADFLWLVRK 487 (540)
Q Consensus 414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NL------A~~L~~~rG 487 (540)
...+....+....+.++..||+++.++.|+|..+....+.+.-+...-+.|..+.|++.+++..+ +.. ....+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 156 (620)
T COG3914 78 APLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRY-LKLLG 156 (620)
T ss_pred cccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHH-HHHhc
Confidence 34477788899999999999999999999999888644455556666666999999999988777 654 34568
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009204 488 DLWAAEETYQQAMAAEPNSSSYASKYASF 516 (540)
Q Consensus 488 D~EEAee~feKALeLDPdnpeal~NLA~~ 516 (540)
+.++++..++++..+.|.++++...+...
T Consensus 157 ~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 157 RTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 89999999999999999998876666555
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.09 E-value=0.64 Score=51.93 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------CCC--
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD-----------------------PPD-- 471 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD-----------------------Pnd-- 471 (540)
.+..+-.++-++||+++|+.+++|.-+|. . ...-..+|+++|+||++.. +.+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAE--E-eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAE--E-EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccc--c-cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 45566666777777777777777766554 1 2344566777777666630 111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCcc
Q 009204 472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN--SSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd--npeal~NLA~~L~~~GR~Et 525 (540)
.-+...+|..+++ .|+.+||++.++..++..|. +-.++.++...|...+++++
T Consensus 259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad 313 (539)
T PF04184_consen 259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYAD 313 (539)
T ss_pred hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHH
Confidence 3355667877664 79999999999999998885 55689999999999999864
No 217
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=0.097 Score=59.03 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 009204 442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS 508 (540)
Q Consensus 442 NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe 508 (540)
.-|.+.|+ .+..|+|...++ .+++.+..++.-.|.++|. .++|++|...|+..++.+-++.+
T Consensus 84 EKAYc~Yr-lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 84 EKAYCEYR-LNKLDEALKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHHHHHH-cccHHHHHHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHH
Confidence 44556663 777777777777 5566666666666777665 56778888887777776655444
No 218
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.94 E-value=0.041 Score=56.23 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204 451 TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506 (540)
Q Consensus 451 ~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn 506 (540)
.+|.+.|.+.|.||+++.|..+..|..+|. +.+..|+.+.|.+.|++.+++||.+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~-~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGE-YTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcch-hhhhcccHHHHHHHHHHHHcCCccc
Confidence 555555555555555555555555555553 2334455555555555555555543
No 219
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.91 E-value=0.18 Score=56.11 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHcCCHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA--LSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA--l~NLA~~L~~~rGD~EEAe 493 (540)
.+++++-..+|++-|...|.|..+|..||-+-. ..||.++|...|+-||....-+..- |-.|-.|-. ..|.+++|.
T Consensus 450 L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi-~~~E~ekaR 527 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI-EEGEFEKAR 527 (677)
T ss_pred HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh-hcchHHHHH
Confidence 478999999999999999999999999998666 6999999999999999975544332 223333333 258899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLW 518 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~ 518 (540)
..|++.++..+... +|...|.+-.
T Consensus 528 ~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 528 ALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHhcccch-HHHhHHHHhc
Confidence 99999999998877 8888888765
No 220
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=0.28 Score=55.47 Aligned_cols=105 Identities=18% Similarity=0.094 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------------------
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP-------------------------- 470 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn-------------------------- 470 (540)
+..++|...++ -+++.+..++.-.|+.+|+ .|+|++|...|+..++-+-+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 45566666665 3467677677778999994 99999999999987543222
Q ss_pred -----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC--------HHHHHHHHHHHHHcCCCccc
Q 009204 471 -----DAEALSQYADFLWLVRKDLWAAEETYQQAMAA-------EPNS--------SSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 471 -----dAeAl~NLA~~L~~~rGD~EEAee~feKALeL-------DPdn--------peal~NLA~~L~~~GR~Et~ 526 (540)
..+-++|.|..+.. .|+|.+|++.+++|+++ +-.+ ..+...+|.+|..+|+.+++
T Consensus 169 ~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred CCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33456677766654 68999999999999442 1222 13688999999999997653
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.77 E-value=0.061 Score=58.83 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC--CHHHHHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNP------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSD----PP--DAEALSQYADFLW 483 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np------~allNLA~~L~~~~GD~deAEe~feRALeLD----Pn--dAeAl~NLA~~L~ 483 (540)
.|+|++|+..-+.-|.+..+.. .++.|+|.++. ..|+++.|.++|++++.+. -. .+...+.||..|.
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence 4889999988887777644332 47889999877 5999999999999977652 22 2334556677665
Q ss_pred HHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCCcc
Q 009204 484 LVRKDLWAAEETYQQAMAAEP------NSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 484 ~~rGD~EEAee~feKALeLDP------dnpeal~NLA~~L~~~GR~Et 525 (540)
. .+++++|++|+.+=+++.- ....+++.||+.+..+|..++
T Consensus 287 l-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 287 L-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 4 5679999999998776532 345578889999999988765
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.77 E-value=0.32 Score=43.56 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
++..++..+. ..|++++|++++++++..+|.+-.++..+-.+|..+|+..+
T Consensus 64 ~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~ 114 (146)
T PF03704_consen 64 ALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAE 114 (146)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4445666554 47899999999999999999999999999999999999753
No 223
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.77 E-value=0.38 Score=41.60 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009204 423 DLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD 471 (540)
Q Consensus 423 e~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd 471 (540)
...++++++.+|+|..+.+.+|..+. ..|++++|.+.+-..++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence 56789999999999999999999888 4999999999999999999877
No 224
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.77 E-value=0.1 Score=52.71 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=68.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAE-----ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW 518 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndAe-----Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~ 518 (540)
|.-++ +.|+|++|..-|.+||++=|.-+. .|.|.|..+.. .+..+.|+.---+||+++|.+-.++...|.+|-
T Consensus 102 GN~~F-~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELF-KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhh-hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 55667 599999999999999999888754 56677776665 567999999999999999999999999999999
Q ss_pred HcCCCccc
Q 009204 519 NTGGEETC 526 (540)
Q Consensus 519 ~~GR~Et~ 526 (540)
.+.+++++
T Consensus 180 k~ek~eea 187 (271)
T KOG4234|consen 180 KMEKYEEA 187 (271)
T ss_pred hhhhHHHH
Confidence 88887754
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.2 Score=53.92 Aligned_cols=107 Identities=11% Similarity=-0.027 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHHcCCHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS-DPPD---AEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL-DPnd---AeAl~NLA~~L~~~rGD~EEA 492 (540)
|++.+|...+++.|...|.|..++.---.+++ ..|+.+.-...+++.+-. +|+- .-++..|+-.|. .-|-|++|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhH
Confidence 77888888888888888888766554444555 488888888888888876 6666 334444554343 35778888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
++.-++|++++|.+.=+....++++-.-||.++
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke 227 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKE 227 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence 888888888888888777788888887777654
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.61 E-value=0.7 Score=49.91 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhchhhhhh-ccCCHHHHHhcccccccccC-CCCCCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHH
Q 009204 372 ELDLWNSVLDEALRIQEESEY-RILDHETMQHFVTPVTVKLE-PDDYMDYFRTDLLYQM-GVAEEPNNPLLLLNYAQFLH 448 (540)
Q Consensus 372 e~~LW~~~L~eap~~q~~~~~-eaLD~e~~~~lvapv~a~Le-~d~~Gd~eeAe~lYqk-ALalDP~Np~allNLA~~L~ 448 (540)
+..=|..|+.-+..++..-.+ .+-.+.+..++ +-.|. ....|+.++|...+.. .....+.+++.+.-.|.++.
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~y----afALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQY----AFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHH----HHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 344477787777666643333 22244444444 11222 2347999999999999 55567888999888888663
Q ss_pred Hh--------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 009204 449 LV--------TKDYDRAEECFKRAIQSDPPDAEALSQYADFL 482 (540)
Q Consensus 449 ~~--------~GD~deAEe~feRALeLDPndAeAl~NLA~~L 482 (540)
+. ...+++|+..|+++.+++|+.-. -.|++.++
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL 269 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLL 269 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHH
Confidence 11 23478999999999999976543 33455443
No 227
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.45 E-value=0.072 Score=35.81 Aligned_cols=31 Identities=35% Similarity=0.445 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP 470 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~feRALeLDPn 470 (540)
+++++|.++.. .|++++|.++|++.++..|+
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 34455554442 55555555555555555554
No 228
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.44 E-value=0.066 Score=33.16 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204 473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506 (540)
Q Consensus 473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn 506 (540)
.++.++|..+.. .+++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence 467788987765 789999999999999999864
No 229
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.40 E-value=0.26 Score=54.92 Aligned_cols=106 Identities=23% Similarity=0.257 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNN----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~N----p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
.+.+.+.+.|+.+|.+=|+- +.+|+-||.+..+ +.++..|.+.+-.||-.-|.+-.... |--+-. +.++++..
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR-q~~l~~ARkiLG~AIG~cPK~KlFk~-YIelEl-qL~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR-QLNLTGARKILGNAIGKCPKDKLFKG-YIELEL-QLREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH-HcccHHHHHHHHHHhccCCchhHHHH-HHHHHH-HHhhHHHH
Confidence 57899999999999999974 4578889998884 89999999999999999998875432 333333 34679999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
...|++-++-.|.+-.+|..||.+-..+|+.|.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999998998774
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.36 E-value=0.52 Score=48.49 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHH----
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA---LSQYADFLWLV---- 485 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA---l~NLA~~L~~~---- 485 (540)
.|++++|...|++.....|..+ .+.+.++..++ +.+++++|+.+.++-+++.|+++++ ++-.|...+..
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 4999999999999999988766 57888888888 5999999999999999999999874 22222222211
Q ss_pred cCC---HHHHHHHHHHHHHhCCCCHH
Q 009204 486 RKD---LWAAEETYQQAMAAEPNSSS 508 (540)
Q Consensus 486 rGD---~EEAee~feKALeLDPdnpe 508 (540)
..| ..+|..-|+..++.-|+...
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 123 45677778888888898764
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.11 E-value=0.087 Score=57.71 Aligned_cols=107 Identities=10% Similarity=0.053 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPL----LLLNYAQFLHLVTKDYDRAEECFKRAIQS------DPPDAEALSQYADFLWL 484 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~----allNLA~~L~~~~GD~deAEe~feRALeL------DPndAeAl~NLA~~L~~ 484 (540)
+.|++......|+.||+.--+|-. +|..+|.+|+ ..+||++|.+|-..-|.+ .-..+..-.|||..+ +
T Consensus 29 k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyf-yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl-K 106 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYF-YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL-K 106 (639)
T ss_pred hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhh-hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh-h
Confidence 458899999999999999777654 6778898888 599999999986654443 233455667888865 6
Q ss_pred HcCCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHcCCC
Q 009204 485 VRKDLWAAEETYQQAMAAE----P--NSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 485 ~rGD~EEAee~feKALeLD----P--dnpeal~NLA~~L~~~GR~ 523 (540)
.+|.+++|+.+-.+-+.+. - ....+++|+|++|...|+-
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~ 151 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC 151 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc
Confidence 7899999998877766543 2 3456899999999998873
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.10 E-value=0.023 Score=62.46 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=65.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
|.-.+ ..++++.|...|.+||+++|+++..+.+.+..+. ..+++-.|+.=..+||+++|....+++.-|.+....+++
T Consensus 11 an~~l-~~~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEAL-KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred Hhhhc-ccchHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44445 4899999999999999999999999988886554 478999999999999999999887776666666666664
Q ss_pred c
Q 009204 524 E 524 (540)
Q Consensus 524 E 524 (540)
.
T Consensus 89 ~ 89 (476)
T KOG0376|consen 89 K 89 (476)
T ss_pred H
Confidence 4
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.05 E-value=0.12 Score=55.91 Aligned_cols=111 Identities=18% Similarity=0.106 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------HHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPL------LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD----------AEALSQYAD 480 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~------allNLA~~L~~~~GD~deAEe~feRALeLDPnd----------AeAl~NLA~ 480 (540)
+.++++.+.|++|++..-++.+ ++..+|.++.+ .+|+++|.-+..+|.++--+. ..++++++.
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 5689999999999987544333 56778887774 999999999999999874332 346677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCcccccC
Q 009204 481 FLWLVRKDLWAAEETYQQAMAAE------PNSSSYASKYASFLWNTGGEETCFPL 529 (540)
Q Consensus 481 ~L~~~rGD~EEAee~feKALeLD------Pdnpeal~NLA~~L~~~GR~Et~~pl 529 (540)
.| ..+|++-.|.++-++|.++. |-++....-+|.+|...|+.|++|+.
T Consensus 215 al-R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 215 AL-RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred HH-HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 65 45788999999999998863 34455677889999999998887763
No 234
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.04 E-value=0.16 Score=49.76 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 009204 422 TDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFL 482 (540)
Q Consensus 422 Ae~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L 482 (540)
|+.+|.+|+.+.|+++..|+.+|.++. ..|+.=.|.-+|-|++...-.++.+..|+..++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 567888888888888888888887766 478888888888888877666677777777654
No 235
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.01 E-value=0.71 Score=46.38 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=84.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC----------------
Q 009204 413 PDDYMDYFRTDLLYQMGVAEEP----NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--DPP---------------- 470 (540)
Q Consensus 413 ~d~~Gd~eeAe~lYqkALalDP----~Np~allNLA~~L~~~~GD~deAEe~feRALeL--DPn---------------- 470 (540)
....|+++.|...+.++...++ ..+.+.+.+|.++. ..|+..+|...++..+.. ...
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLES 234 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccc
Confidence 3466999999999999988652 25678888999999 499999999999999881 110
Q ss_pred ----------------CHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 471 ----------------DAEALSQYADFLWLV-----RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 471 ----------------dAeAl~NLA~~L~~~-----rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
-+.++..+|.+.... .++.+++...|++|++++|+...+|+.+|.++...=..
T Consensus 235 ~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~ 308 (352)
T PF02259_consen 235 LEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES 308 (352)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence 123455566554432 27899999999999999999999999999988765443
No 236
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.19 Score=53.64 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNN----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~N----p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
.+|..|...|-++|+..-.| +.+|.|.|.+-+ ..|+|..|+.-..+|+.++|.+..+++.-|..+++ ..++++|
T Consensus 95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-Le~~~~a 172 (390)
T KOG0551|consen 95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE-LERFAEA 172 (390)
T ss_pred hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-HHHHHHH
Confidence 67999999999999985443 456778887666 49999999999999999999999999988887776 4567777
Q ss_pred HHHHHHHHHhCCC
Q 009204 493 EETYQQAMAAEPN 505 (540)
Q Consensus 493 ee~feKALeLDPd 505 (540)
..+.+..+..+-.
T Consensus 173 ~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 173 VNWCEEGLQIDDE 185 (390)
T ss_pred HHHHhhhhhhhHH
Confidence 7777766665443
No 237
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.88 E-value=0.17 Score=49.57 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204 457 AEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWN 519 (540)
Q Consensus 457 AEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~ 519 (540)
|+.||++|+.+.|++...|+++|.+.. ..|+.-.|+-+|-|++...--.+.+..|+..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999998765 57899999999999998766668899999999888
No 238
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.80 E-value=0.28 Score=42.48 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 009204 457 AEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS--SSYASKYASFLWNTGG 522 (540)
Q Consensus 457 AEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn--peal~NLA~~L~~~GR 522 (540)
....++++++.+|+|.++.+.+|..+. ..|++++|++.+.+.++.++++ ..+.-.+-.++-..|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 456789999999999999999999765 5899999999999999999876 4444444445544454
No 239
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.56 E-value=0.14 Score=34.31 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204 473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506 (540)
Q Consensus 473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn 506 (540)
+++.++|.++.. .|++++|+++|++.++..|++
T Consensus 1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence 467889987765 789999999999999999974
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.56 E-value=0.13 Score=36.64 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Q 009204 474 ALSQYADFLWLVRKDLWAAEETYQQAMAA--EPNS 506 (540)
Q Consensus 474 Al~NLA~~L~~~rGD~EEAee~feKALeL--DPdn 506 (540)
+|.++|.++. ..|++++|+++|++++.+ +|.+
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccC
Confidence 4788998765 589999999999996654 4443
No 241
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.56 E-value=1.1 Score=44.53 Aligned_cols=99 Identities=13% Similarity=0.008 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHH----cC-
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV---TKDYDRAEECFKRAIQSDPPD-AEALSQYADFLWLV----RK- 487 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~---~GD~deAEe~feRALeLDPnd-AeAl~NLA~~L~~~----rG- 487 (540)
.+..+|..+|+.+ .+..++.+.++||.++... ..|+.+|..+|++|.+..-.. ..+..+++..+... .-
T Consensus 91 ~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 91 RDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred ccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 5689999999944 4567888999999988742 349999999999999975433 23477778765431 01
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204 488 -DLWAAEETYQQAMAAEPNSSSYASKYASFLWN 519 (540)
Q Consensus 488 -D~EEAee~feKALeLDPdnpeal~NLA~~L~~ 519 (540)
+..+|..+|.+|-... ++.+..++|..|..
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 3458999999998887 77788888877654
No 242
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.53 E-value=1.3 Score=46.13 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--cCCHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV--RKDLWAAEE 494 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~--rGD~EEAee 494 (540)
.-.+....+|++||+.+|++..++..|=..+. ..-+-++..+.+++++..+|++...|..|-.+.... .-.+++...
T Consensus 45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 45 ALAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 34567788999999999999999988888777 477999999999999999999999998887654321 124677777
Q ss_pred HHHHHHHhCC------------------CCHHHHHHHHHHHHHcCCCc
Q 009204 495 TYQQAMAAEP------------------NSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 495 ~feKALeLDP------------------dnpeal~NLA~~L~~~GR~E 524 (540)
.|.++++.-. .-.+++.++..++.+.|-.|
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence 7777776411 11235788889999999866
No 243
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.44 E-value=0.9 Score=43.86 Aligned_cols=100 Identities=16% Similarity=0.033 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.++.++++.+++..-.+.|+.+.+-.--|.++. ..|++.+|+..++...+-.|..+.+...++..|+. ++|.+ =..+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~-Wr~~ 99 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS-WRRY 99 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH-HHHH
Confidence 468999999999988899999999888888877 59999999999999999999999888878877654 56533 2223
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWN 519 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~ 519 (540)
-.++++..+ ++++..-...++..
T Consensus 100 A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 100 ADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHHHHhcCC-ChHHHHHHHHHHHh
Confidence 344555444 55655444444433
No 244
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=0.33 Score=52.54 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH-------------------
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS------------------- 476 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~------------------- 476 (540)
.|+|++|...|.-+...+--+++++.|+|-+.+ ..|.|.+|+..-.+|-+ .|-.-..+.
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 388999999998888877667888889988777 58899888876655421 111111122
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 477 --------QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 477 --------NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.+|.+.+. +-.|.+|++.|++.+.-+|..--.-.++|.+++.+.-++
T Consensus 148 qD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 148 QDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred hhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence 23333332 346888999999999888887777777888887776655
No 245
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.39 E-value=1.9 Score=42.88 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHc----CCCC---HHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCC--C----HHHHH
Q 009204 417 MDYFRTDLLYQMGVAE----EPNN---PLLLLNYAQFLHLVTKD-------YDRAEECFKRAIQSDPP--D----AEALS 476 (540)
Q Consensus 417 Gd~eeAe~lYqkALal----DP~N---p~allNLA~~L~~~~GD-------~deAEe~feRALeLDPn--d----AeAl~ 476 (540)
..+++|...|.-||.. ...+ +.+++.+|+++. ..|+ +.+|.+.|++|++.+.. . ..+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 5688999888888764 2222 456777888776 4888 44577777777776533 2 34555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 009204 477 QYADFLWLVRKDLWAAEETYQQAMAAEPNS-SSYASKYASFLWN 519 (540)
Q Consensus 477 NLA~~L~~~rGD~EEAee~feKALeLDPdn-peal~NLA~~L~~ 519 (540)
.+|.+ ....|++++|.++|.+.+..--.+ +..+.+.|.=+|+
T Consensus 170 LigeL-~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 170 LIGEL-NRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHH-HHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 56664 445799999999999999843322 2466777766554
No 246
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.33 E-value=0.31 Score=38.72 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ 477 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~N 477 (540)
.++.+|..++ +.|+|++|.++.+++|+++|+|..+..-
T Consensus 3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4566777777 5999999999999999999999887653
No 247
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.24 E-value=0.18 Score=35.27 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204 438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQS 467 (540)
Q Consensus 438 ~allNLA~~L~~~~GD~deAEe~feRALeL 467 (540)
.++.++|.++.. +|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 355666666663 66666776666666664
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.98 E-value=0.58 Score=48.17 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204 437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA---EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPndA---eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea 509 (540)
+..+++-|....+ .|++++|..+|++.....|..+ .++..++..++. .+++++|+.+.++-+++.|+++.+
T Consensus 34 ~~~LY~~g~~~L~-~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQ-KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCCh
Confidence 4566677777774 9999999999999999998885 467777777775 689999999999999999988765
No 249
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.72 E-value=1.2 Score=49.70 Aligned_cols=102 Identities=24% Similarity=0.176 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 009204 418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT--KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDLWAA 492 (540)
Q Consensus 418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~--GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~EEA 492 (540)
+.+.|..+|.+|-.+.. +.+.+.+|.++.... .|..+|.++|.+|... .+..+..++|.++... ..+.+.|
T Consensus 308 d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 78999999999998765 455566787666333 4678999999999875 7888899999865432 2389999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCcc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNT-GGEET 525 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~-GR~Et 525 (540)
..+|++|.+.. ++.+...++.++... +++++
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~ 415 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDT 415 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHccccccH
Confidence 99999999998 444444444443322 45443
No 250
>PRK10941 hypothetical protein; Provisional
Probab=92.62 E-value=0.82 Score=47.14 Aligned_cols=68 Identities=13% Similarity=-0.005 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009204 441 LNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYA 510 (540)
Q Consensus 441 lNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal 510 (540)
.|+=..+. ..+++++|..+.++.+.++|+++.-+.-.|.++. +.|.+..|..-++..++..|+++.+.
T Consensus 185 ~nLK~~~~-~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALM-EEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHH-HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34444444 3677777777777777777777766666665543 45667777777777777777666653
No 251
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=0.54 Score=49.31 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHHH----cC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Q 009204 415 DYMDYFRTDLLYQMGVA----EE--PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD 488 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALa----lD--P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD 488 (540)
+.|+.+.|..+|+++=+ ++ -.+-.++.|.+.++. ..+++..|...|.+.+..||.++.+-+|-|.++. ..|+
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll-Ylg~ 301 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL-YLGK 301 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHH-HHHH
Confidence 55999999999994433 22 334467777777666 6999999999999999999999999999997654 5789
Q ss_pred HHHHHHHHHHHHHhCCCCHH
Q 009204 489 LWAAEETYQQAMAAEPNSSS 508 (540)
Q Consensus 489 ~EEAee~feKALeLDPdnpe 508 (540)
...|++.++.+++.+|..+.
T Consensus 302 l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHhccCCccch
Confidence 99999999999999997643
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=0.63 Score=50.19 Aligned_cols=111 Identities=19% Similarity=0.085 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc-CCCCHH---HHHHHHH
Q 009204 370 KEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE-EPNNPL---LLLNYAQ 445 (540)
Q Consensus 370 ~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal-DP~Np~---allNLA~ 445 (540)
.++--.|..+|+.-|..--+. -..+++. -..|+...-...+++.+-. +|+-|. ++-.||-
T Consensus 120 h~a~~~wdklL~d~PtDlla~---kfsh~a~-------------fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 120 HEAAIEWDKLLDDYPTDLLAV---KFSHDAH-------------FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred cHHHHHHHHHHHhCchhhhhh---hhhhhHH-------------HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 466667888888877622111 0111110 1125555555666666665 555532 3333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009204 446 FLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQ 498 (540)
Q Consensus 446 ~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feK 498 (540)
.+.+ .|-|++|++..++|+++||.|.-+....+.++ +..+++.++.++..+
T Consensus 184 gL~E-~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl-em~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 184 GLEE-CGIYDDAEKQADRALQINRFDCWASHAKAHVL-EMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHH-hccchhHHHHHHhhccCCCcchHHHHHHHHHH-HhcchhhhHHHHHHh
Confidence 4443 67777777777777777777776666666654 334555555554443
No 253
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.94 E-value=0.27 Score=50.56 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE 473 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe 473 (540)
+.++.+.|.++|.+|+++.|+....|.-+|..-. +.|+++.|.+.|++.+++||.|-.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~e-kag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTE-KAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhh-hcccHHHHHHHHHHHHcCCccccc
Confidence 4588999999999999999999999999998555 799999999999999999998854
No 254
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.92 E-value=4.7 Score=39.02 Aligned_cols=81 Identities=17% Similarity=0.002 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204 442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521 (540)
Q Consensus 442 NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~G 521 (540)
....+-. ..++.++++..+...--+.|+.+++-.--|+++. .+|++.+|+..|+...+-.|..+.+-.-+|.+|..+|
T Consensus 15 e~~~~al-~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 15 EVLSVAL-RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHH-ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 3333334 3778899999998888889999998877777654 5788999999999988888988888888888888888
Q ss_pred CCc
Q 009204 522 GEE 524 (540)
Q Consensus 522 R~E 524 (540)
+.+
T Consensus 93 D~~ 95 (160)
T PF09613_consen 93 DPS 95 (160)
T ss_pred ChH
Confidence 754
No 255
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.55 E-value=0.44 Score=33.28 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204 472 AEALSQYADFLWLVRKDLWAAEETYQQAMAA 502 (540)
Q Consensus 472 AeAl~NLA~~L~~~rGD~EEAee~feKALeL 502 (540)
+.++.++|.++.. +|++++|+.++++++++
T Consensus 2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 3578899998765 79999999999999985
No 256
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=0.89 Score=51.58 Aligned_cols=104 Identities=19% Similarity=0.169 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204 420 FRTDLLYQMGVAEEPNNPLLLLNY--AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQ 497 (540)
Q Consensus 420 eeAe~lYqkALalDP~Np~allNL--A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~fe 497 (540)
..+...|...+..+|.++.+++.+ ...+. ..++.+.|.-.++.++..||+++.+..+|+..+-...+....+..+-+
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLA-PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhcc-ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345667777888999999886544 44444 588999999999999999999999999999987655555666667777
Q ss_pred HHHHhCCCCHHHHHHH------HHHHHHcCCCc
Q 009204 498 QAMAAEPNSSSYASKY------ASFLWNTGGEE 524 (540)
Q Consensus 498 KALeLDPdnpeal~NL------A~~L~~~GR~E 524 (540)
.|....|++.++...+ +.++..+|+.+
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTA 159 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHH
Confidence 7999999999987777 66666666654
No 257
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.15 E-value=2 Score=53.01 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
.+-+.|...+.+||+.-|. +.+.....|++-+ +.||.+++..+|+-.|..+|.-.+.|.-|...-. ..|+.+-+..
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei-k~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI-KHGDIKYVRD 1655 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH-ccCCHHHHHH
Confidence 4567888999999999998 7788889999888 5999999999999999999999999998887654 3678999999
Q ss_pred HHHHHHHhC--CCCHHHHHH
Q 009204 495 TYQQAMAAE--PNSSSYASK 512 (540)
Q Consensus 495 ~feKALeLD--Pdnpeal~N 512 (540)
.|++++.+. |...-.+++
T Consensus 1656 lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred HHHHHHhcCCChhHhHHHHH
Confidence 999999875 444443333
No 258
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.15 E-value=0.35 Score=54.05 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHH-HHHcCCC--------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----c-------------CC
Q 009204 417 MDYFRTDLLYQM-GVAEEPN--------NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ-----S-------------DP 469 (540)
Q Consensus 417 Gd~eeAe~lYqk-ALalDP~--------Np~allNLA~~L~~~~GD~deAEe~feRALe-----L-------------DP 469 (540)
|+|.+|.+++.. -+...|. ..-.++|+|-+.++ .|.|.-+..+|.+||+ + .-
T Consensus 254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 677777665543 3444444 22346789988884 9999999999999996 1 12
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204 470 PDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW 518 (540)
Q Consensus 470 ndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~ 518 (540)
..-++++|.|..+.. .|++.+|.++|.+|+..--.+|..|..+|.+-.
T Consensus 333 ks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred cchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 235789999987664 689999999999999999999999999998644
No 259
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.11 E-value=1.6 Score=50.42 Aligned_cols=103 Identities=19% Similarity=0.254 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH--HcCCHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--DPPDAEALSQYADFLWL--VRKDLW 490 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--DPndAeAl~NLA~~L~~--~rGD~E 490 (540)
-.|-++.....|++.|.+.=--|.+..|||.+|.+ ..-+++|.+.|+|.|.+ =|+-.++|+.|-..... ....++
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 34788999999999999988889999999999985 88899999999999997 47778888887654322 134699
Q ss_pred HHHHHHHHHHHhCCCC-H-HHHHHHHHHHH
Q 009204 491 AAEETYQQAMAAEPNS-S-SYASKYASFLW 518 (540)
Q Consensus 491 EAee~feKALeLDPdn-p-eal~NLA~~L~ 518 (540)
.|...|++|++..|.. + ..+..||.+--
T Consensus 568 raRdLFEqaL~~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 568 RARDLFEQALDGCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999998832 1 23455554433
No 260
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.86 E-value=2.7 Score=42.05 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCCccc
Q 009204 452 KDYDRAEECFKRAIQS-DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN----SSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 452 GD~deAEe~feRALeL-DPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd----npeal~NLA~~L~~~GR~Et~ 526 (540)
|| ++|.+.|.++-.. .=++++.+..+|.+|. +.|.++|+..|.+++++.+. |++++..||.++..+|+++.|
T Consensus 121 ~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GD-QEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred Cc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44 5777777665442 2367889999998764 57899999999999998543 689999999999999999999
Q ss_pred ccC
Q 009204 527 FPL 529 (540)
Q Consensus 527 ~pl 529 (540)
|-.
T Consensus 198 Yiw 200 (203)
T PF11207_consen 198 YIW 200 (203)
T ss_pred hhh
Confidence 864
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.53 E-value=1.3 Score=48.76 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH--
Q 009204 416 YMDYFRTDLLYQMGVAEEPNN----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL-- 489 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~N----p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~-- 489 (540)
.|+.++|...|++++.....- ...+..+|..+. .++|+++|.++|.+.++.+.-....|..++.+++...++.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence 489999999999998644332 235667888777 5999999999999999987665555555555555567777
Q ss_pred -----HHHHHHHHHHHHhC
Q 009204 490 -----WAAEETYQQAMAAE 503 (540)
Q Consensus 490 -----EEAee~feKALeLD 503 (540)
++|.++|+++-.+-
T Consensus 359 ~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 359 AKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 88888888886653
No 262
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.48 E-value=1.9 Score=48.26 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHh---cC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVA-------EEPNNPLLLLNYAQFLHLV---TK-DYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALa-------lDP~Np~allNLA~~L~~~---~G-D~deAEe~feRALeLDPndAeAl~NLA~~L~~ 484 (540)
..+.+.|..+|+.|.+ .. ++.+.+.+|.+|... .. |.+.|..+|.+|-+....+ +...+|.++..
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~--a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD--AQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch--HHHHHHHHHHc
Confidence 3688999999999877 33 566788899887731 23 7899999999999986544 45667876654
Q ss_pred Hc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204 485 VR--KDLWAAEETYQQAMAAEPNSSSYASKYASFLWN 519 (540)
Q Consensus 485 ~r--GD~EEAee~feKALeLDPdnpeal~NLA~~L~~ 519 (540)
.. .|+..|.++|..|... .+..+.+++|.++..
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred CCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 44 4678999999998764 566778888887743
No 263
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=0.52 Score=50.48 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204 440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE----ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515 (540)
Q Consensus 440 llNLA~~L~~~~GD~deAEe~feRALeLDPndAe----Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~ 515 (540)
+-.=|+.|+ +.++|..|+..|.++|+.+-.|++ .|.|.|...+. .|+|..|+.--.+|+.++|++.-+++.-|.
T Consensus 84 ~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 334588889 699999999999999998666544 46777765543 578999999999999999999999999999
Q ss_pred HHHHcCCCccc
Q 009204 516 FLWNTGGEETC 526 (540)
Q Consensus 516 ~L~~~GR~Et~ 526 (540)
+++.+.+.++|
T Consensus 162 c~~eLe~~~~a 172 (390)
T KOG0551|consen 162 CLLELERFAEA 172 (390)
T ss_pred HHHHHHHHHHH
Confidence 99999985443
No 264
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=2.4 Score=44.45 Aligned_cols=107 Identities=13% Similarity=0.023 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHH-HHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW-AAEET 495 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~E-EAee~ 495 (540)
..-.+|.++-..+|.++|.|-.+|.-.-.++.....|+.+=.+++.+.++-+|.+..+|.+.-.+ .+..|++. .=++.
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~i-ve~l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVI-VELLGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHH-HHHhcCcccchHHH
Confidence 34578999999999999999999877666676567889999999999999999999999877654 45677888 78899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 496 YQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 496 feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.++.+..|..|.++|...-+++...+.++
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~ 164 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYE 164 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence 99999999999999999999988888875
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.25 E-value=0.77 Score=49.94 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNP-----LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE------ALSQYADFLWL 484 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np-----~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe------Al~NLA~~L~~ 484 (540)
+.++.+++.+-.--+.+--.++ .++..+|.... ..+.+++++++|++|+++.-++.+ ++..+|.++ .
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf-~ 173 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF-A 173 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH-H
Confidence 3556777776666666532222 45666777656 589999999999999998655543 567788765 4
Q ss_pred HcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCCc
Q 009204 485 VRKDLWAAEETYQQAMAAEPN----------SSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 485 ~rGD~EEAee~feKALeLDPd----------npeal~NLA~~L~~~GR~E 524 (540)
+.+|+++|..+..+|.++--. ...+++.++..|..+|+.-
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg 223 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG 223 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 568999999999999987432 2245788999999999864
No 266
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.05 E-value=2.5 Score=49.99 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
+.|..++|..+++..-..-++|-..+-.+-.+|. ..+++++|..+|++|+..+|+ -+.+.+|-..+.. .++|.+-.+
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~qQk 131 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKKQQK 131 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHHHHH
Confidence 4588999997777766677887777777776666 599999999999999999999 6655555444332 334444333
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-CCCcccc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNT-GGEETCF 527 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~-GR~Et~~ 527 (540)
.--+.-+.-|.+++++.+...++.+. ...++..
T Consensus 132 aa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 132 AALQLYKNFPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHHHHHHhCCcccchHHHHHHHHHHhccCCcccc
Confidence 33333347899988765555555443 3334433
No 267
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.91 E-value=0.91 Score=51.30 Aligned_cols=90 Identities=18% Similarity=-0.025 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL--VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~--~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee 494 (540)
+.+..|+..|-++++..|+....+.|+|.++.. ..||.-.|+.--..|+++||..-.+++.|+.++.+ .+++.+|+.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhh
Confidence 456788999999999999999999999987752 35677889999999999999999999999998865 678999999
Q ss_pred HHHHHHHhCCCCH
Q 009204 495 TYQQAMAAEPNSS 507 (540)
Q Consensus 495 ~feKALeLDPdnp 507 (540)
+...+....|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 9888888888543
No 268
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=1.3 Score=46.23 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAE----------ALSQYADFLWLVRKDLWAAEETYQQAM 500 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~feRALeL--------DPndAe----------Al~NLA~~L~~~rGD~EEAee~feKAL 500 (540)
++..-|+-++ +.|+|++|...|+.||.. .|.+++ .+.||...++ ..|+|-+++++-...+
T Consensus 180 ~l~q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 180 VLHQEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHH
Confidence 4556677788 599999999999999863 566654 5678888665 4789999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcC
Q 009204 501 AAEPNSSSYASKYASFLWNTG 521 (540)
Q Consensus 501 eLDPdnpeal~NLA~~L~~~G 521 (540)
..+|+|.-+++..|.+....=
T Consensus 258 ~~~~~nvKA~frRakAhaa~W 278 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVW 278 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhc
Confidence 999999999998887765443
No 269
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.42 E-value=1.1 Score=40.85 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhc---CC-------HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPL---LLLNYAQFLHLVT---KD-------YDRAEECFKRAIQSDPPDAEALSQYADF 481 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~---allNLA~~L~~~~---GD-------~deAEe~feRALeLDPndAeAl~NLA~~ 481 (540)
..|++-+|.++.+..+...+++.. ++.-=|.+++... .| +-.|.++|.++..+.|+.+..++.+|.-
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 347777888888887777776663 3333344433211 11 1235666666666666665555555542
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 009204 482 LWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 482 L~~~rGD~EEAee~feKALe 501 (540)
+- ....|++++.--++++.
T Consensus 88 l~-s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 88 LG-SVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hh-hHHHHHHHHHHHHHHhc
Confidence 21 12235555554444444
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.33 E-value=1.2 Score=35.50 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009204 474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS 511 (540)
Q Consensus 474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~ 511 (540)
-++.+|..++. .|+|++|.++.+++++.+|+|..+..
T Consensus 3 ~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35567776665 78999999999999999999998754
No 271
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=0.89 Score=48.50 Aligned_cols=83 Identities=14% Similarity=0.037 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
.+|.+|++++.--.+.+|.+-..+..+|.+|+. ..++..|..+|++.-.+.|....-...+|.-+++ .+.+..|++..
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~ 101 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVA 101 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHH
Confidence 678999999999999999888888899998884 9999999999999999999998877777887775 57888888776
Q ss_pred HHHHH
Q 009204 497 QQAMA 501 (540)
Q Consensus 497 eKALe 501 (540)
.....
T Consensus 102 ~~~~D 106 (459)
T KOG4340|consen 102 FLLLD 106 (459)
T ss_pred HHhcC
Confidence 55443
No 272
>PRK10941 hypothetical protein; Provisional
Probab=88.85 E-value=1.5 Score=45.29 Aligned_cols=62 Identities=8% Similarity=-0.068 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 009204 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS 476 (540)
Q Consensus 414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~ 476 (540)
.+.+++++|.++.+..+.++|+++.-+...|.++.+ .|.+..|..-++.-|+.-|+++.+-.
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 355899999999999999999999999999998885 99999999999999999999998754
No 273
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=0.83 Score=49.61 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNP-LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np-~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.+|.-|+.+++-.+..+-+.. .+-.-+|.+++. .|||++|...|+-+.+.+--+++.+.|+|...+- .|.|.+|...
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fh-LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH-LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh-hccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHH
Confidence 456777777777666544333 333445667774 9999999999999999888889999999986654 6789999776
Q ss_pred HHHHHHhCCCCHH---HHHHHHHHH
Q 009204 496 YQQAMAAEPNSSS---YASKYASFL 517 (540)
Q Consensus 496 feKALeLDPdnpe---al~NLA~~L 517 (540)
-.+ .|++|- .++++|+-+
T Consensus 114 ~~k----a~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 114 AEK----APKTPLCIRLLFHLAHKL 134 (557)
T ss_pred Hhh----CCCChHHHHHHHHHHHHh
Confidence 555 466654 456666543
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.21 E-value=0.23 Score=53.12 Aligned_cols=74 Identities=24% Similarity=0.162 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 450 ~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
..|.+++|++.|-+||+++|..+..|.+.+.++.. .++..+|++-+..|+.++|+.+.-+--.+.+...+|..+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 48999999999999999999999999999998765 567999999999999999987764333333334445543
No 275
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.16 E-value=7.6 Score=41.51 Aligned_cols=78 Identities=21% Similarity=0.206 Sum_probs=52.2
Q ss_pred HHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC---------------------H---HHHHHHHH
Q 009204 430 VAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS-----DPPD---------------------A---EALSQYAD 480 (540)
Q Consensus 430 LalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL-----DPnd---------------------A---eAl~NLA~ 480 (540)
|+.+|-+.+.+..++.++.. +||++.|.++.+|||-. .|.. . .++..+..
T Consensus 33 l~~~PyHidtLlqls~v~~~-~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQ-QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 45678888888888887774 88888888888887631 1211 1 13333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Q 009204 481 FLWLVRKDLWAAEETYQQAMAAEPN-SSSY 509 (540)
Q Consensus 481 ~L~~~rGD~EEAee~feKALeLDPd-npea 509 (540)
.+. .+|-+..|.++-+-.+.+||. +|..
T Consensus 112 ~L~-~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 112 SLG-RRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred HHH-hcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 433 477888888888888888887 6653
No 276
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.15 E-value=6.2 Score=44.99 Aligned_cols=108 Identities=11% Similarity=0.079 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHc--CCCC-HHHHHHHHHHHHHHcCC
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEE---CFKRAIQS--DPPD-AEALSQYADFLWLVRKD 488 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe---~feRALeL--DPnd-AeAl~NLA~~L~~~rGD 488 (540)
..|+++.|..+|++....-|+...+-.-.+...++ .|..+.+-. ++.....- +++- ...+.+++.+.+..+++
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r-~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERR-KGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHH-hcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 34788888888888888778877777777777774 787777773 33222221 1111 22455677777778899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 489 LWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 489 ~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
.+.|...+.+|+...|++...+..+-.+...++..
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999998887743
No 277
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.10 E-value=8.8 Score=43.34 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF 481 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~ 481 (540)
+.+.+-...|.++|+..|+++++|..-|.-.++..-..+.|...|.++|+.+|+.+..|.-|-.+
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 33667778999999999999999998888777634448999999999999999999998766553
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.90 E-value=2.6 Score=42.34 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHcCCHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE-ALSQYADFLWLVRKDLW 490 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe-Al~NLA~~L~~~rGD~E 490 (540)
+.+++++|+..++.++...-+.- .+-..+|.++.. +|.+|+|...+..--. ++... .....|.++. .+||-+
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill-~kg~k~ 176 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKE--ESWAAIVAELRGDILL-AKGDKQ 176 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHH-HcCchH
Confidence 45899999999999997533221 244568888885 9999999988776533 22222 2233477665 479999
Q ss_pred HHHHHHHHHHHhCCCCH
Q 009204 491 AAEETYQQAMAAEPNSS 507 (540)
Q Consensus 491 EAee~feKALeLDPdnp 507 (540)
+|...|++|++.++..+
T Consensus 177 ~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 177 EARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHccCChH
Confidence 99999999999986544
No 279
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.63 E-value=5.4 Score=44.02 Aligned_cols=125 Identities=18% Similarity=0.043 Sum_probs=84.7
Q ss_pred CHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCH
Q 009204 396 DHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ---SDPPDA 472 (540)
Q Consensus 396 D~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe---LDPndA 472 (540)
|||+...= .-...|+....|..+.|..+-++|-...|.-+.++...=.-.+. .||++.|+++.+...+ +.++-+
T Consensus 149 dPEtRllG--LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 149 DPETRLLG--LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred ChHHHHHh--HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhchhhH
Confidence 66664321 22446666777999999999999999999888766544334553 8999999988877665 345544
Q ss_pred HHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 473 EALS---QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 473 eAl~---NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
+-.. .-+.......-|...|...-.++++++|+...+..--+..|+..|+.
T Consensus 226 eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 226 ERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence 3211 01111112235788888888888888888888887888888888874
No 280
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.52 E-value=3.6 Score=42.96 Aligned_cols=107 Identities=17% Similarity=0.085 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHH-HHHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLL------NYAQFLHLVTKDYDRAEECFKRAIQS-----DPPDAE-ALSQYADFLW 483 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~all------NLA~~L~~~~GD~deAEe~feRALeL-----DPndAe-Al~NLA~~L~ 483 (540)
...|++|..++++|++-.-+|...+. .-|.++. ....+.++..+|++|..+ .|+-+. ++-.-|.++
T Consensus 44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l- 121 (308)
T KOG1585|consen 44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL- 121 (308)
T ss_pred hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-
Confidence 46899999999999976555443322 2233334 588899999999999986 333332 444445443
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCcc
Q 009204 484 LVRKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGGEET 525 (540)
Q Consensus 484 ~~rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR~Et 525 (540)
+ ..++++|+++|++++.+--.. .+.+...+.+|.+..++++
T Consensus 122 e-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 122 E-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred h-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 3 457999999999998863221 2345666777777777654
No 281
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.40 E-value=1.4 Score=28.98 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204 453 DYDRAEECFKRAIQSDPPDAEALSQYAD 480 (540)
Q Consensus 453 D~deAEe~feRALeLDPndAeAl~NLA~ 480 (540)
+.++|...|++++...|.++..|..|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4455555555555555555555554443
No 282
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.35 E-value=3.9 Score=39.14 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-cCCCCHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009204 436 NPLLLLNYAQFLHL--VTKDYDRAEECFKRAIQ-SDPPDAEA-LSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS 511 (540)
Q Consensus 436 Np~allNLA~~L~~--~~GD~deAEe~feRALe-LDPndAeA-l~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~ 511 (540)
.....+|||+.+.. ...|..+-+.+++..++ .+|..-.- ++.+|..++. .++|++|++|.+..++.+|+|.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34667788887752 23456678888888886 55555433 3334555554 56799999999999999998887653
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.13 E-value=5.4 Score=38.44 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL 489 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~ 489 (540)
.+++++++.+++..=-+.|+.+.+..--|.++. ..|++++|...|+...+-.+..+-....++..|+ .+||.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~-al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLN-AKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH-hcCCh
Confidence 467888888888777788998888777777766 5999999999999998888887776666776554 46653
No 284
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.87 E-value=1.6 Score=28.67 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009204 488 DLWAAEETYQQAMAAEPNSSSYASKYASF 516 (540)
Q Consensus 488 D~EEAee~feKALeLDPdnpeal~NLA~~ 516 (540)
+.++|...|++++...|.++..|..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45556666666666666666666655554
No 285
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.73 E-value=0.99 Score=50.62 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC--------CHHHHHHHHHHHHHHcCCH
Q 009204 419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRA-IQSDPP--------DAEALSQYADFLWLVRKDL 489 (540)
Q Consensus 419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRA-LeLDPn--------dAeAl~NLA~~L~~~rGD~ 489 (540)
...+....+.++-..-+.+.++.-.+++.| ..|++.+|.+.+... |.-.|. ...+++|+|.+.+. .+.|
T Consensus 222 Lk~~krevK~vmn~a~~s~~~l~LKsq~eY-~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y 299 (696)
T KOG2471|consen 222 LKLAKREVKHVMNIAQDSSMALLLKSQLEY-AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCY 299 (696)
T ss_pred HHHHHHhhhhhhhhcCCCcHHHHHHHHHHH-HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhH
Confidence 344555556666666677788888899988 599999999887653 333454 23467899988775 6789
Q ss_pred HHHHHHHHHHHH---------hCC---------CCHHHHHHHHHHHHHcCCCcc
Q 009204 490 WAAEETYQQAMA---------AEP---------NSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 490 EEAee~feKALe---------LDP---------dnpeal~NLA~~L~~~GR~Et 525 (540)
..+..+|.+|++ +.| ...++++|.|..|...||+-.
T Consensus 300 ~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~ 353 (696)
T KOG2471|consen 300 QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLL 353 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHH
Confidence 999999999996 112 344689999999999999864
No 286
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.72 E-value=5 Score=34.36 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009204 451 TKDYDRAEECFKRAIQSDPP---------DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEP 504 (540)
Q Consensus 451 ~GD~deAEe~feRALeLDPn---------dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDP 504 (540)
.||+.+|.+.+.+....... ...++.++|.+.. ..|++++|+..+++|+++.-
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence 78888887766666654211 2345666776554 46888888888888888754
No 287
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.66 E-value=1.4 Score=50.49 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 009204 421 RTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE--ALSQYADFLWLVRKDLWAAEETYQQ 498 (540)
Q Consensus 421 eAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe--Al~NLA~~L~~~rGD~EEAee~feK 498 (540)
....+.-.+++..|.+...+ ++|.+|.+.+|+.-+|..|+.+|+-..|.+.. ++..+|.+|.. .|...+|--++..
T Consensus 197 ~~~~~~~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILhA 274 (886)
T KOG4507|consen 197 DIGHLIHEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILHA 274 (886)
T ss_pred HHHHHHHHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheeeh
Confidence 33456667888888776655 56777777899999999999999998887765 67778888764 7888889999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 499 AMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 499 ALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
|+.-.|.-+.-++.++.++.+.|.+.
T Consensus 275 A~~dA~~~t~n~y~l~~i~aml~~~N 300 (886)
T KOG4507|consen 275 ALDDADFFTSNYYTLGNIYAMLGEYN 300 (886)
T ss_pred hccCCccccccceeHHHHHHHHhhhh
Confidence 99988877777888899988888765
No 288
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=86.00 E-value=3.7 Score=48.75 Aligned_cols=62 Identities=24% Similarity=0.337 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH----------HHcCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204 438 LLLLNYAQFLHLVTKDYDRAEECFKRA----------IQSDPP----------DAEALSQYADFLWLVRKDLWAAEETYQ 497 (540)
Q Consensus 438 ~allNLA~~L~~~~GD~deAEe~feRA----------LeLDPn----------dAeAl~NLA~~L~~~rGD~EEAee~fe 497 (540)
..|++||..|. ..+|.+.|++||+++ |.-+|. |+..|...|. |.+..|+.+.|+.+|.
T Consensus 859 ~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq-YlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 859 NTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ-YLESVGEMDAALSFYS 936 (1416)
T ss_pred hhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH-HHhcccchHHHHHHHH
Confidence 46889999888 499999999999985 222343 3344555565 4466899999999998
Q ss_pred HHHH
Q 009204 498 QAMA 501 (540)
Q Consensus 498 KALe 501 (540)
.|-.
T Consensus 937 ~A~D 940 (1416)
T KOG3617|consen 937 SAKD 940 (1416)
T ss_pred Hhhh
Confidence 8754
No 289
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.50 E-value=3.3 Score=37.94 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHH
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDA---EALSQYADFLWLVRK----------DLWAAEETYQQAMAAEPNSSSYA 510 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndA---eAl~NLA~~L~~~rG----------D~EEAee~feKALeLDPdnpeal 510 (540)
|.-++ ..|++-+|++..+..+..++++. ..+..-|.+++.+.. -+-.|+++|.++..+.|+.+..+
T Consensus 3 A~~~~-~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 3 AKDYF-ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHH-HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 45567 49999999999999999999888 445555665543321 25569999999999999999999
Q ss_pred HHHHHHHHHcCCCc
Q 009204 511 SKYASFLWNTGGEE 524 (540)
Q Consensus 511 ~NLA~~L~~~GR~E 524 (540)
+.+|.=+.-...|+
T Consensus 82 ~~la~~l~s~~~Yk 95 (111)
T PF04781_consen 82 FELASQLGSVKYYK 95 (111)
T ss_pred HHHHHHhhhHHHHH
Confidence 99988643333333
No 290
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.38 E-value=8.9 Score=43.76 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=104.8
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCH
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD-PPDA 472 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD-PndA 472 (540)
-|++..++.+..-..- ....|+++...-.|++++--=....+.|..|+..+. ..|+.+-|...+.+|.++. |.-+
T Consensus 291 pl~~aql~nw~~yLdf---~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDF---EITLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred cccHHHHHHHHHHhhh---hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCc
Confidence 3455555555332111 234599999999999999877788899999999888 4899999999999999975 7778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204 473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF 527 (540)
Q Consensus 473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~ 527 (540)
.++..++.+. +..|+++.|..+|++..+--|+...+-...+....+.|..++|.
T Consensus 367 ~i~L~~a~f~-e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 367 IIHLLEARFE-ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHHHHH-HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 8888788764 56789999999999999988999999888888999999988776
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.34 E-value=9 Score=38.52 Aligned_cols=68 Identities=24% Similarity=0.198 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 009204 438 LLLLNYAQFLHLVT------KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK----------------DLWAAEET 495 (540)
Q Consensus 438 ~allNLA~~L~~~~------GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG----------------D~EEAee~ 495 (540)
.++.-+|.++.. . ++.+++..+|++|++++|+...+|..+|.++..... -...|+++
T Consensus 253 ~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 331 (352)
T PF02259_consen 253 KAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG 331 (352)
T ss_pred HHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 455667776663 5 889999999999999999999999999986643211 12458899
Q ss_pred HHHHHHhCCCC
Q 009204 496 YQQAMAAEPNS 506 (540)
Q Consensus 496 feKALeLDPdn 506 (540)
|-+|+...+.+
T Consensus 332 y~~al~~~~~~ 342 (352)
T PF02259_consen 332 YLKALSLGSKY 342 (352)
T ss_pred HHHHHhhCCCc
Confidence 99999998883
No 292
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.93 E-value=4.5 Score=48.11 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHH----------HHcCCC----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------
Q 009204 417 MDYFRTDLLYQMG----------VAEEPN----------NPLLLLNYAQFLHLVTKDYDRAEECFKRAI----------- 465 (540)
Q Consensus 417 Gd~eeAe~lYqkA----------LalDP~----------Np~allNLA~~L~~~~GD~deAEe~feRAL----------- 465 (540)
++.+.|+.+|+++ |..+|. ++.+|.-.|+.+. ..|+.|.|+.+|..|-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~GemdaAl~~Y~~A~D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDAALSFYSSAKDYFSMVRIKCI 950 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh-cccchHHHHHHHHHhhhhhhheeeEee
Confidence 6788899998875 444553 4556666788777 7999999999998853
Q ss_pred ----------HcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204 466 ----------QSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 466 ----------eLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALe 501 (540)
.-...|-.+.+++|.-| +..|+.-+|+.+|-+|-.
T Consensus 951 qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHH
Confidence 34677778888999854 567999999999888754
No 293
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.33 E-value=7 Score=40.64 Aligned_cols=93 Identities=10% Similarity=0.052 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHH-----HHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLL------LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-AEAL-----SQYADFL 482 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~a------llNLA~~L~~~~GD~deAEe~feRALeLDPnd-AeAl-----~NLA~~L 482 (540)
+..+..+|..++++||.+.-+-... +..+|.+|.....|+++|+.+|++|-+.-..+ .... ..-|. |
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~-y 163 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ-Y 163 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH-H
Confidence 4467889999999999886554332 33577777755689999999999998863333 2222 22222 2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 009204 483 WLVRKDLWAAEETYQQAMAAEPNSSS 508 (540)
Q Consensus 483 ~~~rGD~EEAee~feKALeLDPdnpe 508 (540)
..+.++|.+|+..|++.....-+|+-
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchH
Confidence 33457899999999999887777664
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.15 E-value=13 Score=37.72 Aligned_cols=95 Identities=15% Similarity=0.095 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHHc----CCCCH----HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc----CC---CCH------
Q 009204 415 DYMDYFRTDLLYQMGVAE----EPNNP----LLLLNYAQFLHLVTK-DYDRAEECFKRAIQS----DP---PDA------ 472 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALal----DP~Np----~allNLA~~L~~~~G-D~deAEe~feRALeL----DP---ndA------ 472 (540)
.+|+++.|+-+|.|+-.. +|+.. ..++|.|.-++ ..+ +++.|..++++|.++ .+ ..+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 458889999988887554 34433 24566777667 377 899999999998887 22 222
Q ss_pred -HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHH
Q 009204 473 -EALSQYADFLWLVR--KDLWAAEETYQQAMAAEPNSSSYA 510 (540)
Q Consensus 473 -eAl~NLA~~L~~~r--GD~EEAee~feKALeLDPdnpeal 510 (540)
.++..++..+.... ...++|..+++.+-.--|+.+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 23444555544311 235556667767766778777765
No 295
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=82.38 E-value=23 Score=39.40 Aligned_cols=101 Identities=13% Similarity=0.051 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
.+...|...-.+++++.|+...+-..-|..|+. .|+..++-..++.+.+.+| ++++...|-. . ..| +.++.-+
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~--a-r~g--dta~dRl 315 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEP-HPDIALLYVR--A-RSG--DTALDRL 315 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCC-ChHHHHHHHH--h-cCC--CcHHHHH
Confidence 347888889999999999998888888888994 9999999999999999998 4555443322 1 234 4455555
Q ss_pred HHH---HHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 497 QQA---MAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 497 eKA---LeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
+++ ..+.|+|.+..+..+..-+..|++-
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 555 4468999999888888888877753
No 296
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.67 E-value=2.2 Score=48.38 Aligned_cols=75 Identities=21% Similarity=0.088 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 451 TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL--VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 451 ~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~--~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
.+....|+..|.+|++.-|.....|.|++.++.+ ++||.-.|+.--..|+++||..-.+|+.++.+|.+++++.+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 3445688999999999999999999999987654 34677778888889999999999999999999999999753
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.48 E-value=5.8 Score=39.82 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 420 FRTDLLYQMGVAE-EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP----DAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 420 eeAe~lYqkALal-DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn----dAeAl~NLA~~L~~~rGD~EEAee 494 (540)
++|...|.++=.. .=++++..+.+|.+|. ..|.++|+.+|.++|++.+. |++++..|+.++.. .|+++.|--
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhhh
Confidence 3444444433221 2357888889998544 89999999999999998544 48999999998764 688888743
No 298
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.43 E-value=19 Score=37.28 Aligned_cols=99 Identities=13% Similarity=0.003 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHH--------
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA---LSQYADFLWL-------- 484 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA---l~NLA~~L~~-------- 484 (540)
.+...+|+...+.-++.+|.|.....-|-++|+ ..|++++|...++-+-+++|++..- |.++-.....
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evfag~ 92 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVFAGG 92 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHhccC
Confidence 367899999999999999999998888888888 5999999999999999999999653 3332211100
Q ss_pred -----HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Q 009204 485 -----VRKDLWAAEETYQQAMAAEPN-SSSYASKYAS 515 (540)
Q Consensus 485 -----~rGD~EEAee~feKALeLDPd-npeal~NLA~ 515 (540)
..|...+=+..+.+|++++-+ .-++...+..
T Consensus 93 ~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alre 129 (273)
T COG4455 93 AVPGFLGGPSPEWVAALLAALALHSDGAGEARTALRE 129 (273)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHH
Confidence 024677777788888888776 4444444333
No 299
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.55 E-value=5.3 Score=40.24 Aligned_cols=48 Identities=29% Similarity=0.385 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009204 419 YFRTDLLYQMGVAE-----EPNNPL---LLLNYAQFLHLVTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 419 ~eeAe~lYqkALal-----DP~Np~---allNLA~~L~~~~GD~deAEe~feRALe 466 (540)
.++|...|++|+.+ .|.||. +.+|++.|++...|+.++|.+..++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35667777777653 566663 5667777777777787777777777765
No 300
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.42 E-value=12 Score=31.94 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHc----CCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009204 415 DYMDYFRTDLLYQMGVAE----EPNN-----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDP 469 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALal----DP~N-----p~allNLA~~L~~~~GD~deAEe~feRALeLDP 469 (540)
+.++|..|.+.+.+.+.. .... ..++.++|.+.. ..|++++|...+++||++..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence 348888886666665543 3222 456778898877 59999999999999999743
No 301
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.80 E-value=4.9 Score=29.53 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHHcCCC
Q 009204 440 LLNYAQFLHLVTKDYDRAEEC--FKRAIQSDPP 470 (540)
Q Consensus 440 llNLA~~L~~~~GD~deAEe~--feRALeLDPn 470 (540)
+..+|..++. +|++++|+.. |+-+..++|.
T Consensus 4 ~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccc
Confidence 3344444442 5555555555 3344444443
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=79.48 E-value=13 Score=35.23 Aligned_cols=83 Identities=12% Similarity=0.015 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHcC----CC--------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HcCCCCHHHHH-
Q 009204 417 MDYFRTDLLYQMGVAEE----PN--------NPLLLLNYAQFLHLVTKDYDRAEECFKRAI-------QSDPPDAEALS- 476 (540)
Q Consensus 417 Gd~eeAe~lYqkALalD----P~--------Np~allNLA~~L~~~~GD~deAEe~feRAL-------eLDPndAeAl~- 476 (540)
|-|++|...|++|+... |. |+..|..|+..+. ..|+|++++..-++|| +++-+....|.
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 78999999999999863 21 4456777887777 4999988666555555 46666655443
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204 477 ---QYADFLWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 477 ---NLA~~L~~~rGD~EEAee~feKALe 501 (540)
+.|..+ ...|+.++|+..|+.|-+
T Consensus 102 aVfsra~Al-~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 102 AVFSRAVAL-EGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHH-HHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhcCChHHHHHHHHHHHH
Confidence 344443 457999999999999876
No 303
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.39 E-value=2.5 Score=28.30 Aligned_cols=23 Identities=30% Similarity=0.262 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 009204 439 LLLNYAQFLHLVTKDYDRAEECFK 462 (540)
Q Consensus 439 allNLA~~L~~~~GD~deAEe~fe 462 (540)
+++++|..+.. .||+++|+..++
T Consensus 3 a~~~la~~~~~-~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLA-QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHh
Confidence 34455555552 555555555544
No 304
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.04 E-value=4.2 Score=38.90 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=53.1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHH-cCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 009204 408 TVKLEPDDYMDYFRTDLLYQMGVA-EEPNNP-LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS 476 (540)
Q Consensus 408 ~a~Le~d~~Gd~eeAe~lYqkALa-lDP~Np-~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~ 476 (540)
.+-+..++-.+..+.+.+++..++ ..|..- +.++-+|..++ ..|+|++|..|.+..|+.+|++.++..
T Consensus 40 waLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 40 WALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 334445566778889999999997 555543 45556777778 499999999999999999999998754
No 305
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=77.83 E-value=14 Score=43.00 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--DAEALSQYADFLWLVRKDLWAAEE 494 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~rGD~EEAee 494 (540)
.-|+.--.+|++++-.=-.-|.+|..|.+++. .+|+..+-...|.+||..=|- +..+|.-|-.|+- ..+-++-++.
T Consensus 82 ~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~-~~~lPets~r 159 (835)
T KOG2047|consen 82 PAYESVNNCFERCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVE-SHGLPETSIR 159 (835)
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHH-hCCChHHHHH
Confidence 45777788999999877777899999999999 599999999999999998774 4557777777664 4677899999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
.|++-++++|.. ...|-.+|...++.++
T Consensus 160 vyrRYLk~~P~~---~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 160 VYRRYLKVAPEA---REEYIEYLAKSDRLDE 187 (835)
T ss_pred HHHHHHhcCHHH---HHHHHHHHHhccchHH
Confidence 999999999986 4456667778888765
No 306
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.19 E-value=18 Score=38.26 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
.+|.++..+|+..+..+-. -.+|.++-+.+|.++|.+..+|...-.++-....|+.+=++++
T Consensus 40 e~fr~~m~YfRAI~~~~E~------------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEK------------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred hhHHHHHHHHHHHHhcccc------------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4577777777665554443 3466666777899999999998766666666677899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 497 QQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 497 eKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.+.++-+|.|.++|...-.++-.+|++.
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 9999999999999998888888887654
No 307
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=75.80 E-value=2.7 Score=45.17 Aligned_cols=64 Identities=11% Similarity=0.194 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204 418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF 481 (540)
Q Consensus 418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~ 481 (540)
-+.+-...|-+++...|.|.++|.--+.+-+...++.+-+...|.++|+.+|..|..|..|-.+
T Consensus 122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 3455667889999999999999876444433358999999999999999999999998876553
No 308
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=75.72 E-value=9.1 Score=42.89 Aligned_cols=71 Identities=17% Similarity=0.072 Sum_probs=52.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW 518 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~ 518 (540)
|.+++ .+|+|.++.-|-.-..+++| .+.++.-+|..++. .++|++|..++.+.-. +-+--+....-|.++.
T Consensus 469 AEyLy-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 469 AEYLY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQKLPP-NERMRDSKVQKALALC 539 (549)
T ss_pred HHHHH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHhCCC-chhhHHHHHHHHHHHH
Confidence 34667 59999999999999999999 99999999988776 5689999999875322 2222233444555544
No 309
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.66 E-value=18 Score=40.99 Aligned_cols=107 Identities=13% Similarity=0.002 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCHH----HHHHHHHHHHHHc
Q 009204 417 MDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSD---PPDAE----ALSQYADFLWLVR 486 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLD---PndAe----Al~NLA~~L~~~r 486 (540)
.+..+++++++..+...|.+. ..+..+|.+++...++.+.|..++++|..+- |++.+ +...++.++....
T Consensus 23 PkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~ 102 (629)
T KOG2300|consen 23 PKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLA 102 (629)
T ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhc
Confidence 467899999999999888754 3567789988878999999999999999874 55533 3444565555444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCC
Q 009204 487 KDLWAAEETYQQAMAAEPNSSSY----ASKYASFLWNTGGE 523 (540)
Q Consensus 487 GD~EEAee~feKALeLDPdnpea----l~NLA~~L~~~GR~ 523 (540)
..+..|...+++|+++.-+.|.. .+.+|.+..-..++
T Consensus 103 ~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~ 143 (629)
T KOG2300|consen 103 QSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDF 143 (629)
T ss_pred CCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccc
Confidence 47889999999999999988865 34555554444443
No 310
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.36 E-value=32 Score=38.01 Aligned_cols=102 Identities=10% Similarity=-0.035 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC---HHHHH
Q 009204 418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK-DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD---LWAAE 493 (540)
Q Consensus 418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G-D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD---~EEAe 493 (540)
-++.-..+...+|+.+|+.-.+|+....++...-. ++..=.+..++++++||.+-.+|...=.+.-..... ..+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 45666778889999999999999999998873222 478999999999999999998886544333222222 56667
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWN 519 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~ 519 (540)
++-.++|.-++.|..+|.+...++-.
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHH
Confidence 88999999999999999988888763
No 311
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.11 E-value=9.4 Score=36.39 Aligned_cols=53 Identities=23% Similarity=0.147 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDP 469 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDP 469 (540)
+.+..+...+..++.++..| ++.++.+++.++.. .|+.++|....+++..+-|
T Consensus 123 ~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 123 DPEMLEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC
Confidence 33455666778888888888 68888888888774 8888888888888888888
No 312
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.88 E-value=9.7 Score=38.38 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHH-----cCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204 455 DRAEECFKRAIQ-----SDPPDAE---ALSQYADFLWLVRKDLWAAEETYQQAMAA 502 (540)
Q Consensus 455 deAEe~feRALe-----LDPndAe---Al~NLA~~L~~~rGD~EEAee~feKALeL 502 (540)
++|.++|++|++ +.|.+|. ...|++.|++...|+.++|.+..++|+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 679999999988 4788876 45678999999999999999998888763
No 313
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=73.89 E-value=32 Score=39.51 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204 419 YFRTDLLYQMGVAEEPNNP-LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQ 497 (540)
Q Consensus 419 ~eeAe~lYqkALalDP~Np-~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~fe 497 (540)
++....+|++++...-.++ .++.+|=.+..+ ..-.+.|...|.+|-+.--.--.++..-|..-+...+|.+-|.+.|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR-~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR-AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHH-hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 5556667777777644333 456666665553 55567788888888775443334554444444455788999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 498 QAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 498 KALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
-.+..-++.+.+-..|..+|.++++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcch
Confidence 999999999999889999998888865
No 314
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=73.72 E-value=11 Score=38.72 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHH-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009204 419 YFRTDLLYQMGVA-----EEPNNPL---LLLNYAQFLHLVTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 419 ~eeAe~lYqkALa-----lDP~Np~---allNLA~~L~~~~GD~deAEe~feRALe 466 (540)
.++|...|++|+. +.|.||- +.+|++.|+++..++.++|.+..++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4577777777765 3466663 5667778887777888887777776665
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=73.39 E-value=24 Score=34.01 Aligned_cols=86 Identities=10% Similarity=-0.053 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH---
Q 009204 438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLVRKDLWAAEETYQQAMAAE--PNSSSY--- 509 (540)
Q Consensus 438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~rGD~EEAee~feKALeLD--Pdnpea--- 509 (540)
.++..+|.+++ ..||+++|.++|.++...--.... .+.+.-.+.. ..+|+..+..++.+|-.+- +.+.+.
T Consensus 37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 46667787777 488888888888887765332222 2223333322 2467888888888776652 223322
Q ss_pred -HHHHHHHHHHcCCCcc
Q 009204 510 -ASKYASFLWNTGGEET 525 (540)
Q Consensus 510 -l~NLA~~L~~~GR~Et 525 (540)
...-|.++..+|++.+
T Consensus 115 lk~~~gL~~l~~r~f~~ 131 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKE 131 (177)
T ss_pred HHHHHHHHHHHhchHHH
Confidence 2334555566666653
No 316
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=73.29 E-value=10 Score=27.84 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 009204 473 EALSQYADFLWLVRKDLWAAEET--YQQAMAAEPNS 506 (540)
Q Consensus 473 eAl~NLA~~L~~~rGD~EEAee~--feKALeLDPdn 506 (540)
+.+..+|..++ .+|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence 45667787665 47899999999 65898888865
No 317
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.53 E-value=29 Score=36.33 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNP------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA------LSQYADFLW 483 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np------~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA------l~NLA~~L~ 483 (540)
..++++|+.+|++|-.....+- ..++-.|+...+ .++|.+|+..|++...-.-++... |.--+.++.
T Consensus 127 l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~-leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 127 LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ-LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHh
Confidence 4689999999999987643322 133344554453 889999999999998876666542 222233344
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204 484 LVRKDLWAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 484 ~~rGD~EEAee~feKALeLDPdnpea 509 (540)
....|.-.|...+++..+++|...+.
T Consensus 206 l~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HhcccHHHHHHHHHHHHhcCCccccc
Confidence 44578888999999999999987765
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.46 E-value=4.5 Score=27.05 Aligned_cols=25 Identities=24% Similarity=0.081 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009204 473 EALSQYADFLWLVRKDLWAAEETYQQ 498 (540)
Q Consensus 473 eAl~NLA~~L~~~rGD~EEAee~feK 498 (540)
.++.++|.+++. .||+++|+..+++
T Consensus 2 ~a~~~la~~~~~-~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLA-QGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHhC
Confidence 467788888764 7999999998863
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=72.35 E-value=30 Score=36.31 Aligned_cols=81 Identities=22% Similarity=0.108 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
.+|..-....+++++.. ...++..++..+. ..|+++.+++.+++.++.+|-+-.+|..+-.+++ ..|+...|+..|
T Consensus 135 ~~f~~WV~~~R~~l~e~--~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y 210 (280)
T COG3629 135 DRFDEWVLEQRRALEEL--FIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAY 210 (280)
T ss_pred chHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHH
Confidence 34555555555655532 3456677777777 4888889999999999999988888887776665 478888888888
Q ss_pred HHHHH
Q 009204 497 QQAMA 501 (540)
Q Consensus 497 eKALe 501 (540)
++.-.
T Consensus 211 ~~l~~ 215 (280)
T COG3629 211 RQLKK 215 (280)
T ss_pred HHHHH
Confidence 88766
No 320
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=72.30 E-value=41 Score=40.18 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHcCCHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW--LVRKDLWAAEE 494 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~--~~rGD~EEAee 494 (540)
+.-++-+.-++.-+++++.+-..++.|-.++. +.|++++-...-+++-++.|..+..|.++..-.. .+-++..+++.
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llr-k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~ 171 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLR-KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEE 171 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHH
Confidence 44555566777778888888888888888888 5999999999999999999999999888765322 23467889999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 495 TYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 495 ~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
.|++|+. |-+.+..|..++.++...+..
T Consensus 172 ~~ekal~-dy~~v~iw~e~~~y~~~~~~~ 199 (881)
T KOG0128|consen 172 LFEKALG-DYNSVPIWEEVVNYLVGFGNV 199 (881)
T ss_pred HHHHHhc-ccccchHHHHHHHHHHhcccc
Confidence 9999997 667788899999988887763
No 321
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=71.24 E-value=26 Score=36.64 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=45.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009204 450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYA 510 (540)
Q Consensus 450 ~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal 510 (540)
..++++.|..+-++.|.++|+++.-+.--|.+|. +.|.+.-|++-+...++.-|+.+.+-
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHH
Confidence 3777888888888888888888877777776654 46677888888888888888777654
No 322
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=70.42 E-value=20 Score=36.45 Aligned_cols=74 Identities=20% Similarity=0.066 Sum_probs=53.4
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCHH-------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CCH------
Q 009204 450 VTKDYDRAEECFKRAIQSD-PPDAE-------ALSQYADFLWLVRK-DLWAAEETYQQAMAA----EP---NSS------ 507 (540)
Q Consensus 450 ~~GD~deAEe~feRALeLD-PndAe-------Al~NLA~~L~~~rG-D~EEAee~feKALeL----DP---dnp------ 507 (540)
.+||++.|+.+|.|+-.+. .-++. .+++.|.-++. ++ ++++|..++++|.++ .+ ..+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4899999999999998765 33333 45666665554 57 899999999999987 22 222
Q ss_pred -HHHHHHHHHHHHcCCCc
Q 009204 508 -SYASKYASFLWNTGGEE 524 (540)
Q Consensus 508 -eal~NLA~~L~~~GR~E 524 (540)
.++..++.++...+.++
T Consensus 84 ~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYE 101 (278)
T ss_pred HHHHHHHHHHHHcCCChH
Confidence 24677788888777654
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.35 E-value=26 Score=33.91 Aligned_cols=73 Identities=15% Similarity=0.012 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 451 TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 451 ~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
..+.++++..+...--+.|+.+++-.--|+++. .+|++.+|+..++...+-.+..+....-++.+|..+|+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 788888888888888888988888776676554 5788999999998888888888887777888888888754
No 324
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=68.80 E-value=16 Score=37.36 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHH-----cCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204 454 YDRAEECFKRAIQ-----SDPPDAE---ALSQYADFLWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 454 ~deAEe~feRALe-----LDPndAe---Al~NLA~~L~~~rGD~EEAee~feKALe 501 (540)
.++|.+.|++|++ +.|.+|. ...|+++|++...++.++|.+.-++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4589999999987 4588876 3567899999999999999977777765
No 325
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.73 E-value=39 Score=35.64 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=12.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 009204 447 LHLVTKDYDRAEECFKRAIQS 467 (540)
Q Consensus 447 L~~~~GD~deAEe~feRALeL 467 (540)
.++..+++++|..++++|++-
T Consensus 40 afRnAk~feKakdcLlkA~~~ 60 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKG 60 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHH
Confidence 333466666766666666644
No 326
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.51 E-value=37 Score=36.38 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPN-NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAEALSQYADFLWLV 485 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~-Np~allNLA~~L~~~~GD~deAEe~feRALeL--------DPndAeAl~NLA~~L~~~ 485 (540)
+.|.+..|.++.+-.+.+||. ||....-+-..|....++++--++.++..... =|+.+ +..+..++..
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a---~S~aLA~~~l 191 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA---FSIALAYFRL 191 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH---HHHHHHHHHh
Confidence 349999999999999999999 99876666666655688888777777776552 23333 3344444443
Q ss_pred cCCH---------------HHHHHHHHHHHHhCCCCHHH
Q 009204 486 RKDL---------------WAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 486 rGD~---------------EEAee~feKALeLDPdnpea 509 (540)
++- ++|.+.+++|+..-|.-...
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~ 229 (360)
T PF04910_consen 192 -EKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVP 229 (360)
T ss_pred -cCccccccccccccccchhHHHHHHHHHHHHhHHHHHH
Confidence 344 89999999999988764433
No 327
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.81 E-value=28 Score=33.22 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 009204 455 DRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507 (540)
Q Consensus 455 deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp 507 (540)
+..++..++.++..| ++.++.+++.++. ..|+.++|....+++..+-|.+.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcHH
Confidence 345566677777777 7888899998765 58999999999999999999543
No 328
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.96 E-value=38 Score=39.68 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPL------LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL 489 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~------allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~ 489 (540)
..+|..+.+.|...++.-|.|-. ...+++.+|. ...++|+|.++++.|-+.||.++--....-... ...+.-
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~-~~E~~S 444 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF-LAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH-HHhcch
Confidence 36889999999999998777643 4556665555 688999999999999999998886543332222 235778
Q ss_pred HHHHHHHHHHHHh
Q 009204 490 WAAEETYQQAMAA 502 (540)
Q Consensus 490 EEAee~feKALeL 502 (540)
++|+.+..+....
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9999888776654
No 329
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.75 E-value=22 Score=39.29 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-----cC-
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK---DYDRAEECFKRAIQSDPPDAEALSQYADFLWLV-----RK- 487 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G---D~deAEe~feRALeLDPndAeAl~NLA~~L~~~-----rG- 487 (540)
.++..=.++..++++.||.|-.+|..-=.+...... +..+=+++-.++|.-++.|..+|.+...++-.. .|
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~ 204 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN 204 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCc
Confidence 468888999999999999999887643222222222 256678899999999999999999888766422 12
Q ss_pred -----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccccCCC
Q 009204 488 -----DLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSS 531 (540)
Q Consensus 488 -----D~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~pl~~ 531 (540)
-...-+++...|+--||++..+|+.+=+++.+.-+. +||+.+-
T Consensus 205 ~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~~~~~-~~~~~S~ 252 (421)
T KOG0529|consen 205 FMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGRGMRR-ECYIVSH 252 (421)
T ss_pred cCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcccccc-ccccccc
Confidence 144556788889999999999998755544332122 2665443
No 330
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.60 E-value=58 Score=37.20 Aligned_cols=107 Identities=17% Similarity=0.081 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHc---CCC-------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHH--HHHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAE---EPN-------NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD-PPDAE--ALSQYADFLW 483 (540)
Q Consensus 417 Gd~eeAe~lYqkALal---DP~-------Np~allNLA~~L~~~~GD~deAEe~feRALeLD-PndAe--Al~NLA~~L~ 483 (540)
|++.+|+.....+... .|. -+.++.-+|..+. ..+.++.|+..|..|+++- ..+-. .-.|+|..|.
T Consensus 337 ~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~-sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 337 GDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH-SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh-hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 8888888877776553 454 4456777787666 6999999999999999863 33333 3456777665
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCCccccc
Q 009204 484 LVRKDLWAAEETYQQAMAAEPNSS----------SYASKYASFLWNTGGEETCFP 528 (540)
Q Consensus 484 ~~rGD~EEAee~feKALeLDPdnp----------eal~NLA~~L~~~GR~Et~~p 528 (540)
. .+ .++.+|+-.=.+.|.|. .+++-+|.+.+.++++.+|.-
T Consensus 416 ~-~~---~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~ 466 (629)
T KOG2300|consen 416 R-IG---DAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKR 466 (629)
T ss_pred H-hc---cHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4 23 45566665556677643 357889999999999887653
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.26 E-value=60 Score=32.92 Aligned_cols=101 Identities=18% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHcCCHHHHH
Q 009204 421 RTDLLYQMGVAEEPNNPL---LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE----ALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 421 eAe~lYqkALalDP~Np~---allNLA~~L~~~~GD~deAEe~feRALeLDPndAe----Al~NLA~~L~~~rGD~EEAe 493 (540)
+.....++.+..+|.... +.+.+|....+ .|++++|+..++.++.. |.|.. +-.++|.++.. .|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve-~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q-~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVE-ANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQ-QKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHH-hhhHHHHH
Confidence 445555666666665543 33345666775 99999999999999974 44433 45567887765 67899998
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204 494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et 525 (540)
..+..-..- -=.+....-.|.+|...|+.++
T Consensus 147 ~~L~t~~~~-~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 147 KTLDTIKEE-SWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhccccc-cHHHHHHHHhhhHHHHcCchHH
Confidence 887643221 1122334557888999998664
No 332
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=62.98 E-value=67 Score=37.09 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=70.9
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204 427 QMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506 (540)
Q Consensus 427 qkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn 506 (540)
++-|+.+|.|.+.|+.+-.-+. ..-++++.+.|++-+..-|..+.+|..|..-.+. .++++.-+..|.+++..-=+
T Consensus 10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvkvLn- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVKVLN- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh-
Confidence 7889999999999988877444 4489999999999999999999999888876654 67899999999998874322
Q ss_pred HHHHHHHHHHHHHcC
Q 009204 507 SSYASKYASFLWNTG 521 (540)
Q Consensus 507 peal~NLA~~L~~~G 521 (540)
-+.|.-|-.+-.++.
T Consensus 86 lDLW~lYl~YVR~~~ 100 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETK 100 (656)
T ss_pred HhHHHHHHHHHHHHc
Confidence 556665555554444
No 333
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=61.75 E-value=46 Score=33.83 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=75.1
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCC
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL----VTKDYDRAEECFKRAIQSDP 469 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~----~~GD~deAEe~feRALeLDP 469 (540)
.=+|+.+..|.- .|+.. +.+|++|.+.|..--..+- .+..-+.||..+.. ..+++..|.++|+.|-. -
T Consensus 31 EK~Pe~C~lLgd----YlEgi-~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~ 102 (248)
T KOG4014|consen 31 EKRPESCQLLGD----YLEGI-QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--A 102 (248)
T ss_pred cCCchHHHHHHH----HHHHH-HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--c
Confidence 448888887733 22222 2456666666665544333 45555667764431 13478999999999887 5
Q ss_pred CCHHHHHHHHHHHHHHc----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009204 470 PDAEALSQYADFLWLVR----K--DLWAAEETYQQAMAAEPNSSSYASKYASFL 517 (540)
Q Consensus 470 ndAeAl~NLA~~L~~~r----G--D~EEAee~feKALeLDPdnpeal~NLA~~L 517 (540)
+++.+..++|.++|... + |.++|++++.+|..++- ..+.++|...+
T Consensus 103 n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~--~~aCf~LS~m~ 154 (248)
T KOG4014|consen 103 NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED--GEACFLLSTMY 154 (248)
T ss_pred CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC--chHHHHHHHHH
Confidence 78889999998776532 2 38899999999998764 45666665443
No 334
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.64 E-value=68 Score=37.19 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=75.1
Q ss_pred ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HH
Q 009204 393 RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPN-NPLLLLNYAQFLHLVTKDYDRAEECFKRA-----IQ 466 (540)
Q Consensus 393 eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~-Np~allNLA~~L~~~~GD~deAEe~feRA-----Le 466 (540)
.++.++-..-|.+.--.-...++.|++.-|..+.+-.+.++|. ||.+..-+-..|.....+|+=-++.++.+ |.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 3556665544433321111234569999999999999999999 99887776666665577777777766665 44
Q ss_pred cCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC
Q 009204 467 SDPPDAEALSQYADFLWLVRK--DLWAAEETYQQAMAAEPN 505 (540)
Q Consensus 467 LDPndAeAl~NLA~~L~~~rG--D~EEAee~feKALeLDPd 505 (540)
.=|+.+-.. .+|.++..... +-..|+..+.+|+...|.
T Consensus 412 ~~PN~~yS~-AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNFGYSL-ALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCchHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 557766543 25666554322 256799999999998883
No 335
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=60.66 E-value=7.6 Score=42.05 Aligned_cols=103 Identities=15% Similarity=0.052 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHc-C----------CC--------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAE-E----------PN--------NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS 476 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALal-D----------P~--------Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~ 476 (540)
.++|+.|..-|++++.. + ++ --....|.+.+.. +.+++..|...-..+++.++....+++
T Consensus 235 k~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka~~ 313 (372)
T KOG0546|consen 235 KQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKAHY 313 (372)
T ss_pred hccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhCcHHH
Confidence 36677777777777653 1 11 1124556666555 688999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204 477 QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNT 520 (540)
Q Consensus 477 NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~ 520 (540)
..+..+. ...++++|++.++.|...+|++..+...+...-...
T Consensus 314 Rr~~~~~-~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 314 RRGQAYK-LLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred HHHhHHH-hhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 9998755 467899999999999999999998866665544333
No 336
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.42 E-value=42 Score=39.37 Aligned_cols=80 Identities=18% Similarity=0.094 Sum_probs=59.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFL 517 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L 517 (540)
|.-.++ ..+|..+.+.|+..+..-|.| +....+++..|.. ..+++.|.+++++|-+.||.++-.-.-.-...
T Consensus 361 A~~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 361 AKKLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 444674 899999999999999976655 4567777766554 56799999999999999999987644444444
Q ss_pred HHcCCCcc
Q 009204 518 WNTGGEET 525 (540)
Q Consensus 518 ~~~GR~Et 525 (540)
..-|.-++
T Consensus 439 ~~E~~Se~ 446 (872)
T KOG4814|consen 439 LAEDKSEE 446 (872)
T ss_pred HHhcchHH
Confidence 44454443
No 337
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.16 E-value=39 Score=33.70 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHH
Q 009204 419 YFRTDLLYQMGVAEEPN--N----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA-EALSQYAD 480 (540)
Q Consensus 419 ~eeAe~lYqkALalDP~--N----p~allNLA~~L~~~~GD~deAEe~feRALeLDPndA-eAl~NLA~ 480 (540)
+.+|...|.+|+..... . ..+++-+|.+.. ..|++++|.++|.+.+...-... ..+.++|.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 56777888888876432 2 345666787777 59999999999999999532222 24445554
No 338
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=59.63 E-value=91 Score=27.74 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFK 462 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~fe 462 (540)
+.......+++..+..++.++..+..|..++. .-+..+..++++
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~--~~~~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA--KYDPQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH--HHCHHHHHHHHH
Confidence 56788888888888888888877777776554 335566666666
No 339
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=59.30 E-value=29 Score=35.21 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009204 436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV----RKDLWAAEETYQQAMAAEPNSSSYAS 511 (540)
Q Consensus 436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~----rGD~EEAee~feKALeLDPdnpeal~ 511 (540)
.|+.-.-|+..+...+++|++|...|+.--. +-.++...+.||...+.. .+++..|.++|+.|.. -+.+.+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCd-en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCD-ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR 109 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence 4555555777777678999999999988766 445777888888754432 2479999999999987 56778888
Q ss_pred HHHHHHHHcCCCcccccC
Q 009204 512 KYASFLWNTGGEETCFPL 529 (540)
Q Consensus 512 NLA~~L~~~GR~Et~~pl 529 (540)
++|.++|.-....++-|.
T Consensus 110 ~~gLl~~~g~~~r~~dpd 127 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPD 127 (248)
T ss_pred hhhhhhccCcCCccCCCC
Confidence 999988875444334433
No 340
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=57.60 E-value=89 Score=30.10 Aligned_cols=87 Identities=15% Similarity=0.094 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHH---HHHHHHHcC
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQS--DPPDAEALSQY---ADFLWLVRK 487 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeL--DPndAeAl~NL---A~~L~~~rG 487 (540)
-|+++.|.++|.++...--... +.+.+.-.+.. ..+|+..+..+..+|-.+ .+.+.+..+.+ ..++....+
T Consensus 49 ~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r 127 (177)
T PF10602_consen 49 IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQR 127 (177)
T ss_pred hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhc
Confidence 4999999999999887643322 45556666666 499999999999998876 34444443322 222333468
Q ss_pred CHHHHHHHHHHHHHhC
Q 009204 488 DLWAAEETYQQAMAAE 503 (540)
Q Consensus 488 D~EEAee~feKALeLD 503 (540)
+|.+|.+.|..++.-.
T Consensus 128 ~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 128 DFKEAAELFLDSLSTF 143 (177)
T ss_pred hHHHHHHHHHccCcCC
Confidence 8999999998876543
No 341
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=57.26 E-value=17 Score=24.69 Aligned_cols=29 Identities=28% Similarity=0.147 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHHh
Q 009204 474 ALSQYADFLWLVR---KDLWAAEETYQQAMAA 502 (540)
Q Consensus 474 Al~NLA~~L~~~r---GD~EEAee~feKALeL 502 (540)
++.++|..+.... .|.++|..+|++|.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4455555443211 2666666666666553
No 342
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.05 E-value=7.9 Score=45.68 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=75.5
Q ss_pred ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 009204 393 RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPL------LLLNYAQFL--HLVTKDYDRAEECFKRA 464 (540)
Q Consensus 393 eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~------allNLA~~L--~~~~GD~deAEe~feRA 464 (540)
+.|.+++.-.+ -|.-.+-.+|+.-.++-+ -|+.=|+... +-+.||-++ ....||.++|+...-.+
T Consensus 197 ~VL~~d~V~nl------mlSyRDvQdY~amirLVe-~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~l 269 (1226)
T KOG4279|consen 197 DVLHPDTVSNL------MLSYRDVQDYDAMIRLVE-DLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPL 269 (1226)
T ss_pred cccCHHHHHHH------HhhhccccchHHHHHHHH-HHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHH
Confidence 45555554444 223345566765555443 3444453221 122233333 33468999999999999
Q ss_pred HHcC-CCCHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204 465 IQSD-PPDAEALSQYADFLWL--------VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE 523 (540)
Q Consensus 465 LeLD-PndAeAl~NLA~~L~~--------~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~ 523 (540)
++.+ |-.++.+...|.+|-. -.+..+.|+++|+||++..|.- +.-.|+|.+|...|+.
T Consensus 270 ve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 270 VEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEH 336 (1226)
T ss_pred HHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhh
Confidence 9876 4455666655665421 1245788999999999999974 4456888888888864
No 343
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.40 E-value=37 Score=36.15 Aligned_cols=54 Identities=28% Similarity=0.308 Sum_probs=46.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA 499 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKA 499 (540)
+.-+. ..|++.+|...|+.|+..+|++.++...|+..+.. .|+.++|...+...
T Consensus 141 ~~~~~-~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~l 194 (304)
T COG3118 141 AKELI-EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAAL 194 (304)
T ss_pred hhhhh-hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhC
Confidence 44455 39999999999999999999999999999997765 78999998887764
No 344
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=56.35 E-value=20 Score=40.11 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=25.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204 450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQ 497 (540)
Q Consensus 450 ~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~fe 497 (540)
..++.+-|+.+..|.|.++|.+..-+..-|.+ +....+|.+|.+-+-
T Consensus 240 ~~rkpdlALnh~hrsI~lnP~~frnHLrqAav-fR~LeRy~eAarSam 286 (569)
T PF15015_consen 240 RMRKPDLALNHSHRSINLNPSYFRNHLRQAAV-FRRLERYSEAARSAM 286 (569)
T ss_pred hcCCCchHHHHHhhhhhcCcchhhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45666666666666666666665555555543 233344555544433
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.45 E-value=1.7e+02 Score=33.24 Aligned_cols=85 Identities=15% Similarity=0.029 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCHHHH----HHHHHHHHHHcCC
Q 009204 419 YFRTDLLYQMGVAEEPN----NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD--PPDAEAL----SQYADFLWLVRKD 488 (540)
Q Consensus 419 ~eeAe~lYqkALalDP~----Np~allNLA~~L~~~~GD~deAEe~feRALeLD--PndAeAl----~NLA~~L~~~rGD 488 (540)
...|+.+++-+++..+= ...+++.||.+|+....++++|+.+++|++.+. ++..+.. .-++.++. ..+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~-~~~- 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYF-KTN- 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-hcC-
Confidence 45678888888853221 234778899999877999999999999998886 4444332 22344443 234
Q ss_pred HHHHHHHHHHHHHhCCC
Q 009204 489 LWAAEETYQQAMAAEPN 505 (540)
Q Consensus 489 ~EEAee~feKALeLDPd 505 (540)
...|..+.+++|+.--+
T Consensus 115 ~~~a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 115 PKAALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 55599999999987544
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.09 E-value=50 Score=38.50 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=11.6
Q ss_pred HHHHcCCCcccccCCCCcc
Q 009204 516 FLWNTGGEETCFPLSSSQD 534 (540)
Q Consensus 516 ~L~~~GR~Et~~pl~~~~~ 534 (540)
+++.+|++++|.-+.-+.+
T Consensus 730 ~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHcCCHHHHHHHHHhcC
Confidence 4566777777765544443
No 347
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=54.01 E-value=24 Score=36.86 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS 476 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~ 476 (540)
..+++.|..+-++.+.++|+++.-+..-|.+|.+ .|.+.-|.+-+...++.=|+++.+-.
T Consensus 194 e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 194 ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHH
Confidence 4789999999999999999999999999998885 99999999999999999999997643
No 348
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.66 E-value=62 Score=35.56 Aligned_cols=101 Identities=12% Similarity=-0.056 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------H----------H--
Q 009204 419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-------------A----------E-- 473 (540)
Q Consensus 419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-------------A----------e-- 473 (540)
..+-++.-..||++||+.+.+|.-+|. . ..--..+|++.|++||+..-.. . .
T Consensus 200 p~~RI~~A~~ALeIN~eCA~AyvLLAE--E-Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y 276 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECATAYVLLAE--E-EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY 276 (556)
T ss_pred cHHHHHHHHHHHhcCchhhhHHHhhhh--h-hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence 444466677888899988888777664 2 2445678888888888742111 1 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCC
Q 009204 474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS--SYASKYASFLWNTGGE 523 (540)
Q Consensus 474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnp--eal~NLA~~L~~~GR~ 523 (540)
+...+|. +....|+..||++.++...+--|-.. .++.|+-.++....-|
T Consensus 277 IKRRLAM-CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 277 IKRRLAM-CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred HHHHHHH-HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 1122443 33456899999999998888777322 2345555555444443
No 349
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=51.82 E-value=39 Score=27.28 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009204 441 LNYAQFLHLVTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 441 lNLA~~L~~~~GD~deAEe~feRALe 466 (540)
.+-|.-+- ..|++++|..+|.+|++
T Consensus 9 ~~~Av~~D-~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEAD-EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHH-HTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 34444444 47777777777777766
No 350
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=51.67 E-value=1.1e+02 Score=32.09 Aligned_cols=68 Identities=13% Similarity=0.023 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHH----cC-----------------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204 457 AEECFKRAIQSDPPDAEALSQYADFLWLV----RK-----------------DLWAAEETYQQAMAAEPNSSSYASKYAS 515 (540)
Q Consensus 457 AEe~feRALeLDPndAeAl~NLA~~L~~~----rG-----------------D~EEAee~feKALeLDPdnpeal~NLA~ 515 (540)
-.+.++.=++..|+...++..+|.++... || -.+.|..++.+|++++|....+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 44555555566777777776666544321 11 2677888899999999998888777777
Q ss_pred HHHHcCCCc
Q 009204 516 FLWNTGGEE 524 (540)
Q Consensus 516 ~L~~~GR~E 524 (540)
+-...|.++
T Consensus 142 ~s~~fgeP~ 150 (277)
T PF13226_consen 142 ISAYFGEPD 150 (277)
T ss_pred HHhhcCCch
Confidence 666666654
No 351
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=51.49 E-value=25 Score=25.74 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204 453 DYDRAEECFKRAIQSDPPDAEALSQYAD 480 (540)
Q Consensus 453 D~deAEe~feRALeLDPndAeAl~NLA~ 480 (540)
++++|...|+|.+...|+ +..|..||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 345555566666555543 444555544
No 352
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=51.02 E-value=1.6e+02 Score=33.47 Aligned_cols=111 Identities=13% Similarity=0.032 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHH------------cCCCCHHHHHHHHH--
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEE--CFKRAIQ------------SDPPDAEALSQYAD-- 480 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe--~feRALe------------LDPndAeAl~NLA~-- 480 (540)
++-++|..+++.+++..|.|...-+-. +++ ....|.+|.. .+-+.+. +.-.+.+.-+-++.
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v--~~f-vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIV--FLF-VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHH--HHH-HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 457899999999999999998765432 222 2333444332 1222222 22334554444543
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc---cccCCCC
Q 009204 481 FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET---CFPLSSS 532 (540)
Q Consensus 481 ~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et---~~pl~~~ 532 (540)
+++ ..|+|.++.-+-.=..+.+| .+.++.-+|.++....+|++ |+---||
T Consensus 471 yLy-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 471 YLY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 344 47999999999999999999 89999999999999999986 4444444
No 353
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=50.73 E-value=66 Score=37.12 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 009204 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ 477 (540)
Q Consensus 414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~N 477 (540)
++-+..++|..+|++.++++|+ ..++.||+-++. .|-..+|...++ ++.|.-...|++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 110 (578)
T PRK15490 53 HDVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLILK---KVSNGVQKKYNN 110 (578)
T ss_pred hhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHHH---HhCccHhHHHHH
Confidence 3457889999999999999888 567788888884 888888888887 455553234443
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.00 E-value=79 Score=27.67 Aligned_cols=56 Identities=7% Similarity=-0.011 Sum_probs=37.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHH
Q 009204 444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF---LWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~---L~~~rGD~EEAee~feKALe 501 (540)
|.-+|. .++.++|+..+++||+..++.++-+..+|.+ +.+ .|+|++++.+-.+=+.
T Consensus 13 GlkLY~-~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 13 GLKLYH-QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHhc-cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 334563 7888888888888888888877766666653 333 4667777666554443
No 355
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.50 E-value=1.9e+02 Score=35.06 Aligned_cols=103 Identities=19% Similarity=0.031 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHcCCC--C---HH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPN--N---PL----LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE-----ALSQYADFL 482 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~--N---p~----allNLA~~L~~~~GD~deAEe~feRALeLDPndAe-----Al~NLA~~L 482 (540)
.++++|..+..++-..=|. . .. ...-.|.+.. ..|+.++|+++.+.++..=|.+.. ++...|.+.
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 6788888888777665333 1 11 2222344555 499999999999999998776643 455666654
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC----CHHHH--HHHHHHHHHcC
Q 009204 483 WLVRKDLWAAEETYQQAMAAEPN----SSSYA--SKYASFLWNTG 521 (540)
Q Consensus 483 ~~~rGD~EEAee~feKALeLDPd----npeal--~NLA~~L~~~G 521 (540)
..+|++++|..+.+++.+.+-. +-..| ..-+.++..+|
T Consensus 508 -~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 508 -HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred -HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999987432 22222 33366677777
No 356
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.11 E-value=28 Score=35.51 Aligned_cols=24 Identities=8% Similarity=-0.090 Sum_probs=20.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcC
Q 009204 410 KLEPDDYMDYFRTDLLYQMGVAEE 433 (540)
Q Consensus 410 ~Le~d~~Gd~eeAe~lYqkALalD 433 (540)
-+..-|.|+|+.|....+.||+.+
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcC
Confidence 344557799999999999999985
No 357
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=49.01 E-value=1.4e+02 Score=28.52 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHH--
Q 009204 451 TKDYDRAEECFKRAIQSDPPD------------AEALSQYADFLWLVRKDLWAAEETYQQAM-------AAEPNSSSY-- 509 (540)
Q Consensus 451 ~GD~deAEe~feRALeLDPnd------------AeAl~NLA~~L~~~rGD~EEAee~feKAL-------eLDPdnpea-- 509 (540)
.|-|++|..-+++|++....- +-.+..|+..+.. .|+|++++.--++|+ +++.+.-..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 788999999999999974332 2234455555553 688988766655555 466666554
Q ss_pred --HHHHHHHHHHcCCCcccc
Q 009204 510 --ASKYASFLWNTGGEETCF 527 (540)
Q Consensus 510 --l~NLA~~L~~~GR~Et~~ 527 (540)
-++.|.++-.+|+.+++.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~ 120 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEAL 120 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHhcCChHHHH
Confidence 477889999999988754
No 358
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=49.00 E-value=1.5e+02 Score=33.57 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204 451 TKDYDRAEECFKRAIQSD-PPDAE----------ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWN 519 (540)
Q Consensus 451 ~GD~deAEe~feRALeLD-PndAe----------Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~ 519 (540)
.|+|..|+++..+.-.+. |..+. +-..+...| ...++.+-|+.+..+.|.++|.+..-+..-|.++..
T Consensus 196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CY-L~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~ 274 (569)
T PF15015_consen 196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCY-LRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR 274 (569)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhh-hhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH
Confidence 556666666666654442 22221 122334333 345667778888888888888777777777777776
Q ss_pred cCCCcc
Q 009204 520 TGGEET 525 (540)
Q Consensus 520 ~GR~Et 525 (540)
+.||-+
T Consensus 275 LeRy~e 280 (569)
T PF15015_consen 275 LERYSE 280 (569)
T ss_pred HHHHHH
Confidence 666643
No 359
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=48.34 E-value=33 Score=23.18 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 009204 438 LLLLNYAQFLHLVT---KDYDRAEECFKRAIQS 467 (540)
Q Consensus 438 ~allNLA~~L~~~~---GD~deAEe~feRALeL 467 (540)
.+.+++|.++.... .|.++|..+|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 45677887765322 3899999999999765
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.03 E-value=79 Score=32.95 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=51.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204 450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 450 ~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea 509 (540)
..+.+++|+...+.-++.+|.++....-|-.+|. ..|++++|...++-+-+++|++..-
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchH
Confidence 3788999999999999999999987776666554 5799999999999999999987654
No 361
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=47.68 E-value=32 Score=26.74 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009204 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRA 457 (540)
Q Consensus 425 lYqkALalDP~Np~allNLA~~L~~~~GD~deA 457 (540)
.|.+||..+|++-...+.||..|.+ .|+.++|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDE-HGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence 4555566666666666666665553 5555444
No 362
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.21 E-value=2.2e+02 Score=31.37 Aligned_cols=91 Identities=22% Similarity=0.208 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHcCCHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP---DAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn---dAeAl~NLA~~L~~~rGD~EEAe 493 (540)
-+|..-..+|+......| .|-+-.|-|..+.. .--.+.++...+.... +|. +--.+..-|.++. +.|+.++|.
T Consensus 310 tDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~-~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~-rLgr~~eAr 385 (415)
T COG4941 310 TDWPAIDALYDALEQAAP-SPVVTLNRAVALAM-REGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLA-RLGRVEEAR 385 (415)
T ss_pred CChHHHHHHHHHHHHhCC-CCeEeehHHHHHHH-hhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHH-HhCChHHHH
Confidence 678888999998888888 46666777876663 3334555555554444 322 2223444566654 579999999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 009204 494 ETYQQAMAAEPNSSSYAS 511 (540)
Q Consensus 494 e~feKALeLDPdnpeal~ 511 (540)
..|++|+.+.++.++..+
T Consensus 386 ~aydrAi~La~~~aer~~ 403 (415)
T COG4941 386 AAYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHHHHHhcCChHHHHH
Confidence 999999999999887644
No 363
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.92 E-value=42 Score=28.68 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204 443 YAQFLHLVTKDYDRAEECFKRAIQS 467 (540)
Q Consensus 443 LA~~L~~~~GD~deAEe~feRALeL 467 (540)
.|.-+- ..|++++|..+|..||+.
T Consensus 12 ~Ave~D-~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 12 LAVQRD-QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHH-HccCHHHHHHHHHHHHHH
Confidence 343334 477777777777777763
No 364
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=45.86 E-value=44 Score=28.64 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009204 441 LNYAQFLHLVTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 441 lNLA~~L~~~~GD~deAEe~feRALe 466 (540)
...|.-|- ..|++++|+.+|+.||+
T Consensus 10 a~~AVe~D-~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 10 AINAVKAE-KEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence 33344333 46666666666665555
No 365
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=45.72 E-value=44 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHHh
Q 009204 488 DLWAAEETYQQAMAA 502 (540)
Q Consensus 488 D~EEAee~feKALeL 502 (540)
|+++|.++|++|.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 356666666666543
No 366
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=43.33 E-value=2.2e+02 Score=34.82 Aligned_cols=106 Identities=12% Similarity=0.029 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----HcCCHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL----VRKDLWAA 492 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~----~rGD~EEA 492 (540)
..+++|...|++.- -.|.-|.-|++-|.+|. ..|++++-+++|.-|++.-|++|+.-.---.+.+. ...+..+|
T Consensus 533 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (932)
T PRK13184 533 RDFTQALSEFSYLH-GGVGAPLEYLGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREA 610 (932)
T ss_pred HHHHHHHHHHHHhc-CCCCCchHHHhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888887643 46778888989898877 59999999999999999999998753222222111 12345678
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204 493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524 (540)
Q Consensus 493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~E 524 (540)
.....-|+...|........--.+-.-.++.+
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (932)
T PRK13184 611 LVFMLLALWIAPEKISSREEEKFLEILYHKQQ 642 (932)
T ss_pred HHHHHHHHHhCcccccchHHHHHHHHHHhhcc
Confidence 88888899999976655433333333334433
No 367
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=42.95 E-value=48 Score=31.32 Aligned_cols=46 Identities=30% Similarity=0.302 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 009204 436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFL 482 (540)
Q Consensus 436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L 482 (540)
..+.....|.-++ ..||+.-|.++...++..+|+|.++..-.+.++
T Consensus 69 G~d~vl~~A~~~~-~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al 114 (141)
T PF14863_consen 69 GADKVLERAQAAL-AAGDYQWAAELLDHLVFADPDNEEARQLKADAL 114 (141)
T ss_dssp CHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3444555555555 366666666666666666666666655555543
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.53 E-value=1e+02 Score=34.18 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204 433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 433 DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALe 501 (540)
.-+++..|-.+|.... .+|+++-|+++|+++=. . ..+. +++...|+.++=.+..+.|..
T Consensus 343 ~~~~~~~W~~Lg~~AL-~~g~~~lAe~c~~k~~d-----~---~~L~-lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEAL-RQGNIELAEECYQKAKD-----F---SGLL-LLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp CCSTHHHHHHHHHHHH-HTTBHHHHHHHHHHCT------H---HHHH-HHHHHCT-HHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHH-HcCCHHHHHHHHHhhcC-----c---cccH-HHHHHhCCHHHHHHHHHHHHH
Confidence 4557889999999888 49999999999999733 2 2233 234456776655555554444
No 369
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.48 E-value=45 Score=24.48 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204 418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQF 446 (540)
Q Consensus 418 d~eeAe~lYqkALalDP~Np~allNLA~~ 446 (540)
++++|...|++.+...|+ +..|..||.+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 578999999999999984 8889889875
No 370
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.73 E-value=1.6e+02 Score=39.27 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHc---CC----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204 419 YFRTDLLYQMGVAE---EP----NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 419 ~eeAe~lYqkALal---DP----~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE 491 (540)
..+-+..+++++-. +| .-+..|.++|++.. ..|.++.|..+.-.|.+.. -++++...|..+|. +||...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHH
Confidence 44445555555432 33 34578999999888 5999999999999999988 56677788998886 799999
Q ss_pred HHHHHHHHHHhC
Q 009204 492 AEETYQQAMAAE 503 (540)
Q Consensus 492 Aee~feKALeLD 503 (540)
|+..+++-+.++
T Consensus 1721 Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1721 ALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhh
Confidence 999999999764
No 371
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=40.60 E-value=46 Score=27.27 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=12.2
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009204 450 VTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 450 ~~GD~deAEe~feRALe 466 (540)
..|++++|..+|.+|++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 37777777777777766
No 372
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.14 E-value=1.4e+02 Score=34.29 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=54.3
Q ss_pred CCCCHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009204 433 EPNNPLL-LLNYAQFLHLVTKDYDRAEECFKRAIQS---DPP----DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEP 504 (540)
Q Consensus 433 DP~Np~a-llNLA~~L~~~~GD~deAEe~feRALeL---DPn----dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDP 504 (540)
|+++..+ ++-+|.++. ..|+...|..+|+..++. .-+ .|.+++.+|.+++...|-..+|.+++++|-.-..
T Consensus 444 d~Dd~~lk~lL~g~~lR-~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILR-NLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 4544433 334576777 499999999999999842 222 2678999999998865559999999999999775
Q ss_pred CC
Q 009204 505 NS 506 (540)
Q Consensus 505 dn 506 (540)
++
T Consensus 523 dY 524 (546)
T KOG3783|consen 523 DY 524 (546)
T ss_pred cc
Confidence 54
No 373
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=40.13 E-value=37 Score=28.78 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=11.8
Q ss_pred cCCHHHHHHHHHHHHH
Q 009204 451 TKDYDRAEECFKRAIQ 466 (540)
Q Consensus 451 ~GD~deAEe~feRALe 466 (540)
.|++++|..+|..+|+
T Consensus 19 ~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5777777777777766
No 374
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=40.06 E-value=2e+02 Score=31.60 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=69.5
Q ss_pred HHHHHHHhhchhhhhh--ccC-CHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Q 009204 377 NSVLDEALRIQEESEY--RIL-DHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKD 453 (540)
Q Consensus 377 ~~~L~eap~~q~~~~~--eaL-D~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD 453 (540)
..++++-.++++...- ..+ +|++.+.+.+ + .+-..-..++++-...-|+..+.++.||.+.|+ .|+
T Consensus 76 ~~Vla~lkeLe~ev~piv~~le~Pd~~~~~~~--------~--k~~~~~l~~L~e~ynf~~e~i~~lykyakfqye-CGN 144 (432)
T KOG2758|consen 76 TEVLAELKELEEEVAPIVKVLENPDLIAALRS--------D--KDRVQNLQHLQEHYNFTPERIETLYKYAKFQYE-CGN 144 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHh--------h--hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccC
Confidence 4556666666654332 223 7777766633 1 111344556666666789999999999999996 999
Q ss_pred HHHHHHHHH--HHHHcCCC--CHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204 454 YDRAEECFK--RAIQSDPP--DAE-ALSQYADFLWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 454 ~deAEe~fe--RALeLDPn--dAe-Al~NLA~~L~~~rGD~EEAee~feKALe 501 (540)
|..|-.|+- |++--+|+ +.. .|..+|.=.. ..+++.|.+-+.+.-+
T Consensus 145 Y~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL--~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 145 YSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL--TQNWDGALEDLTRLRE 195 (432)
T ss_pred cccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 999987654 45544332 333 3444443221 3578999888777655
No 375
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=39.94 E-value=72 Score=33.54 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
.++++.+...+++-+..+|.+-.+|..+=..|+ ..|+...|+..|++.-+. ++.-+ .-+--.++...
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~----------~~edl--gi~P~~~~~~~ 232 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT----------LAEEL--GIDPAPELRAL 232 (280)
T ss_pred cccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH----------hhhhc--CCCccHHHHHH
Confidence 488999999999999999999999988877888 599999999999998775 11111 01234566667
Q ss_pred HHHHHHhCCCC
Q 009204 496 YQQAMAAEPNS 506 (540)
Q Consensus 496 feKALeLDPdn 506 (540)
|.+++...|.+
T Consensus 233 y~~~~~~~~~~ 243 (280)
T COG3629 233 YEEILRQDPLD 243 (280)
T ss_pred HHHHhcccccc
Confidence 77776666644
No 376
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.90 E-value=3.9e+02 Score=31.34 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----c------------
Q 009204 417 MDYFRTDLLYQMGVAE------------EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ-----S------------ 467 (540)
Q Consensus 417 Gd~eeAe~lYqkALal------------DP~Np~allNLA~~L~~~~GD~deAEe~feRALe-----L------------ 467 (540)
..|++|...|.-|.+. .|-+.+.++.+|.++. .+||.+-|....+|+|= +
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r-~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFR-FQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 4456666666665543 4556667777887766 48887766666666552 1
Q ss_pred ----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Q 009204 468 ----DPPDAE---ALSQYADFLWLVRKDLWAAEETYQQAMAAEPN-SSSYA 510 (540)
Q Consensus 468 ----DPndAe---Al~NLA~~L~~~rGD~EEAee~feKALeLDPd-npeal 510 (540)
.|.|-. +++.|-..+ ..+|=+..|.++-+-.++++|. +|...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l-~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSL-AQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 222222 122222222 2467788888888888888887 66543
No 377
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.85 E-value=4e+02 Score=30.33 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC---CHHHHHHHHHHHHHHcCCHHHHH
Q 009204 420 FRTDLLYQMGVAEEP--NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ-SDPP---DAEALSQYADFLWLVRKDLWAAE 493 (540)
Q Consensus 420 eeAe~lYqkALalDP--~Np~allNLA~~L~~~~GD~deAEe~feRALe-LDPn---dAeAl~NLA~~L~~~rGD~EEAe 493 (540)
.-|+.++.+|-..-+ .+..-...|-.+ ...|+.+++-+++ ..+. .+.++..||.+|+..-.++++|+
T Consensus 8 ~lAeey~~~A~~~~~~~~~~~~l~~Y~kL-------I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae 80 (608)
T PF10345_consen 8 SLAEEYLEKAHSLATKVKSEEQLKQYYKL-------IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAE 80 (608)
T ss_pred HHHHHHHHHhHHHHHhcCChhhHHHHHHH-------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345556665544322 233333344332 2478899998884 2222 24478889999998889999999
Q ss_pred HHHHHHHHhC--CCCHHHH----HHHHHHHHHcCC
Q 009204 494 ETYQQAMAAE--PNSSSYA----SKYASFLWNTGG 522 (540)
Q Consensus 494 e~feKALeLD--Pdnpeal----~NLA~~L~~~GR 522 (540)
.++.|++.+. ++..+.. +-++.++.+.+.
T Consensus 81 ~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 81 TYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 9999999887 4444332 233455555443
No 378
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.52 E-value=1.8e+02 Score=29.55 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCC-CCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH----HHHHHcCCHH
Q 009204 417 MDYFRTDLLYQMGVAEEP-NNP-LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD----FLWLVRKDLW 490 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP-~Np-~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~----~L~~~rGD~E 490 (540)
+..++|...|...=+..- ..| .+....|.++.+ .|+-+.|..+|..+-.-. .-|.+...++. +++--.|-|+
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~-kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ-KGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh-cccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccccHH
Confidence 444445544444333221 111 233334444453 666666666666654432 23333322222 1111245555
Q ss_pred HHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204 491 AAEETYQQA-MAAEPNSSSYASKYASFLWNTGGEETC 526 (540)
Q Consensus 491 EAee~feKA-LeLDPdnpeal~NLA~~L~~~GR~Et~ 526 (540)
.-....+.. -.-+|-...+...||..-|+.|++..+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A 186 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKA 186 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHH
Confidence 544443332 122344445566666666666666543
No 379
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=39.44 E-value=67 Score=27.25 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=11.2
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009204 450 VTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 450 ~~GD~deAEe~feRALe 466 (540)
..|++++|..+|.+||+
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 46777776666666665
No 380
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.91 E-value=1.9e+02 Score=29.60 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------HHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009204 435 NNPLLLLNYAQFLHLVTKDYDRAEECFKRA----------------IQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQ 498 (540)
Q Consensus 435 ~Np~allNLA~~L~~~~GD~deAEe~feRA----------------LeLDPndAeAl~NLA~~L~~~rGD~EEAee~feK 498 (540)
.+|.+|..+|..+. ..|++.+|+.+|-.. -+-.|...+.+...|++-+...++...|...+..
T Consensus 88 Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 88 GDPELHHLLAEKLW-KEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp --HHHHHHHHHHHH-HTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 47889999999988 499999998887432 2346777777777777766667888888887776
Q ss_pred HHHh
Q 009204 499 AMAA 502 (540)
Q Consensus 499 ALeL 502 (540)
-++.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 381
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=38.23 E-value=2.1e+02 Score=27.86 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 413 PDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 413 ~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
-..-|+..+-..+|-+.=. .+ -|.++|.-....+|+.|+-++.++....-+-.+|+.+..+|.+|- ..|+..+|
T Consensus 66 is~C~NlKrVi~C~~~~n~---~s--e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~-klg~~r~~ 139 (161)
T PF09205_consen 66 ISKCGNLKRVIECYAKRNK---LS--EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYK-KLGNTREA 139 (161)
T ss_dssp GGG-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHH-HTT-HHHH
T ss_pred chhhcchHHHHHHHHHhcc---hH--HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-HhcchhhH
Confidence 3455888888888865432 22 245556544335899999999999988777778999999999865 57999999
Q ss_pred HHHHHHHHHh
Q 009204 493 EETYQQAMAA 502 (540)
Q Consensus 493 ee~feKALeL 502 (540)
.+.+++|.+.
T Consensus 140 ~ell~~ACek 149 (161)
T PF09205_consen 140 NELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 382
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=37.67 E-value=55 Score=25.21 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009204 441 LNYAQFLHLVTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 441 lNLA~~L~~~~GD~deAEe~feRALe 466 (540)
+++|..|.. .||.+.|.+.+++.+.
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHH
Confidence 567888774 8888888888888884
No 383
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=36.98 E-value=52 Score=24.61 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204 440 LLNYAQFLHLVTKDYDRAEECFKRAIQS 467 (540)
Q Consensus 440 llNLA~~L~~~~GD~deAEe~feRALeL 467 (540)
|.-+|.+-.. .++|++|.+-|+++|++
T Consensus 4 ~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 4 YDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 3344444442 45555555555555543
No 384
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.97 E-value=66 Score=27.56 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=12.2
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 009204 450 VTKDYDRAEECFKRAIQS 467 (540)
Q Consensus 450 ~~GD~deAEe~feRALeL 467 (540)
..|++++|.++|.+||+.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 467777777777777663
No 385
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=36.89 E-value=86 Score=36.01 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFK 462 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~fe 462 (540)
|+.-.|-+....+|...|.+|....-.+.+... .|+|++|...+.
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~-lg~ye~~~~~~s 347 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSH-LGYYEQAYQDIS 347 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHH-hhhHHHHHHHhh
Confidence 666666666666666666666655555555553 666666555543
No 386
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.36 E-value=3.5e+02 Score=29.47 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009204 443 YAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA 499 (540)
Q Consensus 443 LA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKA 499 (540)
-+..|. ..|.+.+|.++-++++.+||-+-..+-.+-.+|. .+||--.|..+|++.
T Consensus 285 va~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la-~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHHH
Confidence 345555 5999999999999999999999998877777665 478877777777754
No 387
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=35.79 E-value=64 Score=25.11 Aligned_cols=33 Identities=36% Similarity=0.367 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204 459 ECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA 492 (540)
Q Consensus 459 e~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA 492 (540)
..|.+||..+|++.....-||..|- ..|+.+.|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~-e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLD-EHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHH-HcCCHHHH
Confidence 4566777777777777777777654 36666544
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=35.70 E-value=1.3e+02 Score=26.35 Aligned_cols=52 Identities=2% Similarity=-0.143 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHc
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQ---FLHLVTKDYDRAEECFKRAIQS 467 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~---~L~~~~GD~deAEe~feRALeL 467 (540)
+..+..+|...+++||+..++.++-+..+|. ++.+ .|+|.+++++..+=+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLEI 72 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4577899999999999998888876666554 4564 88888888776665554
No 389
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=35.36 E-value=1.1e+02 Score=35.48 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204 435 NNPLLLLNYAQFLHL-VTKDYDRAEECFKRAIQS-----DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 435 ~Np~allNLA~~L~~-~~GD~deAEe~feRALeL-----DPndAeAl~NLA~~L~~~rGD~EEAee~feKALe 501 (540)
..|.++.|||.+-.. ...+-..++++|++||.. +-.+.-.|..+|..++. +++|.+|+.++-+|-.
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAAD 346 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHH
Confidence 466777777765321 123345677777777764 33333345556665553 5677777777666644
No 390
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=35.21 E-value=3.2e+02 Score=31.45 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204 423 DLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA 502 (540)
Q Consensus 423 e~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeL 502 (540)
+..++.-|+.+|+|...|+.+-+.|. .++.+++-.+.|++...--|-.+.+|..|-.--+ .++|+..-+..|-+++..
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~-tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~EL-A~~df~svE~lf~rCL~k 105 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLE-TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGEL-ARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHh-hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchh-hhhhHHHHHHHHHHHHhh
Confidence 33788889999999999999998777 6999999999999999988888888876644322 367899999999998875
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 009204 503 EPNSSSYASKYASFLWNTG 521 (540)
Q Consensus 503 DPdnpeal~NLA~~L~~~G 521 (540)
.-+ -+.|.-|-.+-.+..
T Consensus 106 ~l~-ldLW~lYl~YIRr~n 123 (660)
T COG5107 106 SLN-LDLWMLYLEYIRRVN 123 (660)
T ss_pred hcc-HhHHHHHHHHHHhhC
Confidence 433 566766665555544
No 391
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=34.82 E-value=1.6e+02 Score=35.64 Aligned_cols=89 Identities=22% Similarity=0.119 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204 436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--D-------AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506 (540)
Q Consensus 436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn--d-------AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn 506 (540)
+|....-+|..+. ...++++|+.+..++-..-|. + ++...-.|.+. ..+|++++|+++-+.++..=|.+
T Consensus 414 ~P~Lvll~aW~~~-s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~va-l~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 414 TPRLVLLQAWLLA-SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVA-LNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred CchHHHHHHHHHH-HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhcccc
Confidence 3344445677777 599999999999998876444 2 22222234443 35899999999999999988866
Q ss_pred HH-----HHHHHHHHHHHcCCCccc
Q 009204 507 SS-----YASKYASFLWNTGGEETC 526 (540)
Q Consensus 507 pe-----al~NLA~~L~~~GR~Et~ 526 (540)
.. ++...|.+..-.|+++++
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~A 516 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQA 516 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHH
Confidence 54 467777777777877654
No 392
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=34.76 E-value=65 Score=26.42 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=12.9
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009204 450 VTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 450 ~~GD~deAEe~feRALe 466 (540)
..|++++|..+|..|++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 46888888888877776
No 393
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=34.75 E-value=65 Score=35.68 Aligned_cols=68 Identities=24% Similarity=0.159 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204 423 DLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 423 e~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALe 501 (540)
..+.+.||..-. |++..+.+|. ..|+++.|.+..+ .-+++..|..+|.... ..|+++-|+++|+++-.
T Consensus 308 ~G~~e~AL~~~~-D~~~rFeLAl----~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL-~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 308 KGYPELALQFVT-DPDHRFELAL----QLGNLDIALEIAK-----ELDDPEKWKQLGDEAL-RQGNIELAEECYQKAKD 375 (443)
T ss_dssp TT-HHHHHHHSS--HHHHHHHHH----HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHH-HTTBHHHHHHHHHHCT-
T ss_pred CCCHHHHHhhcC-ChHHHhHHHH----hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHH-HcCCHHHHHHHHHhhcC
Confidence 345566666654 5778888775 5899988887644 3457889999999765 57999999999998754
No 394
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.36 E-value=71 Score=27.59 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=8.2
Q ss_pred cCCHHHHHHHHHHHHH
Q 009204 451 TKDYDRAEECFKRAIQ 466 (540)
Q Consensus 451 ~GD~deAEe~feRALe 466 (540)
.|+.++|+.+|+++++
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555555555544
No 395
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=34.03 E-value=1.7e+02 Score=35.78 Aligned_cols=91 Identities=10% Similarity=-0.045 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHh---cC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPL---LLLNYAQFLHLV---TK---DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK 487 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~---allNLA~~L~~~---~G---D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG 487 (540)
..|++|...|++.-.--|...+ +.+-.|..+.++ .| ++++|+.-|++.-. -|.-|--|..-|.+ |+..|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 566 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV-YQRLG 566 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH-HHHhh
Confidence 4577777778777777887664 555566655322 23 46677777766533 34444444444544 45689
Q ss_pred CHHHHHHHHHHHHHhCCCCHHH
Q 009204 488 DLWAAEETYQQAMAAEPNSSSY 509 (540)
Q Consensus 488 D~EEAee~feKALeLDPdnpea 509 (540)
+++|=+++|.-|++.-|++|..
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999999999874
No 396
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=33.30 E-value=1e+02 Score=25.64 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=11.8
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009204 450 VTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 450 ~~GD~deAEe~feRALe 466 (540)
..|++++|..+|.+|++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 46777777777777665
No 397
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.25 E-value=1.5e+02 Score=34.40 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY 496 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f 496 (540)
...+++....+.-+--.......++.-|.++.+ .+..++|.++|++.+..+|+ +.+..+|.-++. +|-.+.|...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~ 97 (578)
T PRK15490 22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLIL 97 (578)
T ss_pred hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHH
Confidence 344555555555554444455556666778884 89999999999999999999 567778887764 78888888887
Q ss_pred HHHHHhCCC
Q 009204 497 QQAMAAEPN 505 (540)
Q Consensus 497 eKALeLDPd 505 (540)
+ ++.|.
T Consensus 98 ~---~~~~~ 103 (578)
T PRK15490 98 K---KVSNG 103 (578)
T ss_pred H---HhCcc
Confidence 7 44444
No 398
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.38 E-value=78 Score=23.70 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204 473 EALSQYADFLWLVRKDLWAAEETYQQAMAA 502 (540)
Q Consensus 473 eAl~NLA~~L~~~rGD~EEAee~feKALeL 502 (540)
++|..+|-+-.. .++|++|++-|++|+++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 567778887554 67899999999999986
No 399
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.18 E-value=2.1e+02 Score=27.15 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204 487 KDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521 (540)
Q Consensus 487 GD~EEAee~feKALeLDPdnpeal~NLA~~L~~~G 521 (540)
||+.-|.+....++..+|+|..+..-.+.+|.++|
T Consensus 84 gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 84 GDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.13 E-value=2.2e+02 Score=26.02 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009204 456 RAEECFKRAIQ--SDPPDAEALSQYADFLWLVRKDLWAAEETYQQAM 500 (540)
Q Consensus 456 eAEe~feRALe--LDPndAeAl~NLA~~L~~~rGD~EEAee~feKAL 500 (540)
.+.+.|+.... +--..+..|..+|.++ ...|++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~l-e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFL-EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHH-HHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHH-HHcCCHHHHHHHHHhhC
Confidence 77777777766 4567788888899876 45899999999999886
No 401
>PF12854 PPR_1: PPR repeat
Probab=29.48 E-value=1e+02 Score=21.76 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009204 436 NPLLLLNYAQFLHLVTKDYDRAEECFKR 463 (540)
Q Consensus 436 Np~allNLA~~L~~~~GD~deAEe~feR 463 (540)
|...|..+-..++ +.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~C-k~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYC-KAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHH-HCCCHHHHHHHHHh
Confidence 4455666666667 48888888887764
No 402
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=29.20 E-value=63 Score=35.32 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD 480 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~ 480 (540)
.+.+..|...-..+++.++....+|+-.+..+. ...++++|++.++.|...+|++..+...+..
T Consensus 288 ~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~-~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 288 VKGRGGARFRTNEALRDERSKTKAHYRRGQAYK-LLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred ccCCCcceeccccccccChhhCcHHHHHHhHHH-hhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 356666766666777789999999999999888 5999999999999999999999998766554
No 403
>PF06022 Cir_Bir_Yir: Plasmodium variant antigen protein Cir/Yir/Bir; InterPro: IPR006477 This group of sequences identifies a large paralogous family of variant antigens from several Plasmodium species (Plasmodium yoelii, Plasmodium berghei and Plasmodium chabaudi). It is not believed that there are any orthologs of this family in Plasmodium falciparum.
Probab=27.79 E-value=56 Score=34.17 Aligned_cols=28 Identities=29% Similarity=0.825 Sum_probs=23.9
Q ss_pred hhhHHHHHhHhhcCC----------chHHHHHHHHHhh
Q 009204 236 NSSFVWLFQQVFSRT----------PTLMVYVMILLAN 263 (540)
Q Consensus 236 ~aSfvwlfq~vfs~t----------P~lmv~vmilLan 263 (540)
.|-|.|||.|.|... +.+..|+||-|..
T Consensus 52 nA~~i~Ll~~~f~~~~~~~~~~~~n~~~~eYiilWLsy 89 (280)
T PF06022_consen 52 NAGFIWLLNQLFKNSDSFENSEKNNINIVEYIILWLSY 89 (280)
T ss_pred HHHHHHHHHHHhccCcccccccccchhHHHHHHHHHHH
Confidence 789999999999853 3589999999975
No 404
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=27.41 E-value=2.4e+02 Score=27.08 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 009204 475 LSQYADFLWLVRKDLWAAEETYQQA 499 (540)
Q Consensus 475 l~NLA~~L~~~rGD~EEAee~feKA 499 (540)
..|+|.| |...||.+=.++|++-|
T Consensus 53 CHNLA~F-WR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 53 CHNLADF-WRSQGDSDYELKYLQLA 76 (140)
T ss_pred HhhHHHH-HHHcCChHHHHHHHHHH
Confidence 3455554 34455555555555444
No 405
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=26.90 E-value=1.3e+02 Score=24.19 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHcCC
Q 009204 456 RAEECFKRAIQSDP 469 (540)
Q Consensus 456 eAEe~feRALeLDP 469 (540)
+|.+++.+++...+
T Consensus 30 ~ai~~l~~~~~~~~ 43 (69)
T PF04212_consen 30 EAIEYLMQALKSES 43 (69)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHhccCC
Confidence 55555555555554
No 406
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=26.90 E-value=91 Score=26.77 Aligned_cols=45 Identities=13% Similarity=0.013 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 009204 421 RTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA 474 (540)
Q Consensus 421 eAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA 474 (540)
.|..+..+|++.|-.. .+.-|.++|. +|++.+.+++...|+++..
T Consensus 5 ~A~~~a~~AVe~D~~g---r~~eAi~~Y~------~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 5 MARKYAINAVKAEKEG---NAEDAITNYK------KAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHH------HHHHHHHHHHHhCCChHHH
Confidence 4566666666665432 1223444453 6777777777777776653
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.88 E-value=1.4e+02 Score=30.22 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 009204 370 KEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLH 448 (540)
Q Consensus 370 ~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~ 448 (540)
++++.+|+.+-.|.+..+. | ++..+.++.--.+ +..-..|+|++|.+.+++-.. +|+....-..|+.+..
T Consensus 86 ESAl~v~~~I~~E~~~~~~------l-he~i~~lik~~aV-~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 86 ESALMVLESIEKEFSLPET------L-HEEIRKLIKEQAV-AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHhcCCcHH------H-HHHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 4899999999999886431 1 1222222221111 113345888888888888888 7877766555555433
No 408
>COG4907 Predicted membrane protein [Function unknown]
Probab=26.78 E-value=44 Score=37.71 Aligned_cols=32 Identities=6% Similarity=0.122 Sum_probs=14.3
Q ss_pred ccccccceeEEecCCcCCCCccccccccccCC
Q 009204 6 GPSIQNSVQIIVPYALSQKPASFMSSASFTTR 37 (540)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (540)
|-|-.--+|.+.-+-|.+.++|..--.-|.++
T Consensus 278 g~e~~y~i~~v~~r~p~~~~kp~~vn~i~~gd 309 (595)
T COG4907 278 GAELMYYIHVVFKRKPKSKNKPIKVNRILPGD 309 (595)
T ss_pred cceeEEeehhheeecCCcCCCCcEEEEecCCC
Confidence 33333334444444455555555444444443
No 409
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=26.00 E-value=2.6e+02 Score=32.07 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009204 416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe 466 (540)
.+++.-|-..|+-.+...|+.+.....|-.++. ..+|-+.|..+|+++++
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi-~inde~naraLFetsv~ 494 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI-RINDEENARALFETSVE 494 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCcHHHHHHHHHHhHH
Confidence 345555555555555555555554444444444 25555555555555544
No 410
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.98 E-value=1.2e+02 Score=37.84 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=71.4
Q ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204 425 LYQMG-VAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAEALSQYADFLWLVRKDLWAAEET 495 (540)
Q Consensus 425 lYqkA-LalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--------DPndAeAl~NLA~~L~~~rGD~EEAee~ 495 (540)
++.+. -.+.|+.+..|..+|.+++ ..+|+++|..+-++|.-+ .|+....+.+++.+.+. .+....|...
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~-~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~~~al~~ 1037 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSN-RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNLSGALKS 1037 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHh-hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCccchhhh
Confidence 55533 3347888888888888888 499999999888777654 36666778888876655 3467778888
Q ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCCCcc
Q 009204 496 YQQAMAA--------EPNSSSYASKYASFLWNTGGEET 525 (540)
Q Consensus 496 feKALeL--------DPdnpeal~NLA~~L~~~GR~Et 525 (540)
+.+|..+ .|.-+....+++.++...+++++
T Consensus 1038 ~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~ 1075 (1236)
T KOG1839|consen 1038 LNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADT 1075 (1236)
T ss_pred HHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHH
Confidence 8888775 45555566788888777777765
No 411
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=2.3e+02 Score=33.49 Aligned_cols=77 Identities=19% Similarity=0.125 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHH--------
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAEALSQYAD-------- 480 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--------DPndAeAl~NLA~-------- 480 (540)
|+++.|.++. .+-++..=|-.||.+.. ..+++..|.++|.+|-.+ .-++++.+..+|.
T Consensus 651 grl~iA~~la-----~e~~s~~Kw~~Lg~~al-~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 651 GRLDIAFDLA-----VEANSEVKWRQLGDAAL-SAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred CcHHHHHHHH-----HhhcchHHHHHHHHHHh-hcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 4555444432 34566777888999777 599999999999998653 3455554433332
Q ss_pred ----HHHHHcCCHHHHHHHHHHH
Q 009204 481 ----FLWLVRKDLWAAEETYQQA 499 (540)
Q Consensus 481 ----~L~~~rGD~EEAee~feKA 499 (540)
+.+...|+++++++.+.+-
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHhc
Confidence 3333467888877776654
No 412
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.57 E-value=1.2e+02 Score=37.96 Aligned_cols=105 Identities=20% Similarity=0.202 Sum_probs=79.3
Q ss_pred cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009204 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE--------EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAI 465 (540)
Q Consensus 394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal--------DP~Np~allNLA~~L~~~~GD~deAEe~feRAL 465 (540)
.+.+++++++-.. +.+ ....+++++|...-++|.-. .|+....+.|++.+.+ ..+....|...+.+|+
T Consensus 967 ~~h~~~~~~~~~L--a~l-~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f-~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 967 VLHPEVASKYRSL--AKL-SNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEF-AVKNLSGALKSLNRAL 1042 (1236)
T ss_pred hcchhHHHHHHHH--HHH-HhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHH-hccCccchhhhHHHHH
Confidence 6688888888664 232 23457888888887777543 4666778889998777 5889999999999998
Q ss_pred Hc--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009204 466 QS--------DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAE 503 (540)
Q Consensus 466 eL--------DPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLD 503 (540)
.+ +|.=+....|++.++. ..++++.|+++++.|.+++
T Consensus 1043 ~l~~Ls~ge~hP~~a~~~~nle~l~~-~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1043 KLKLLSSGEDHPPTALSFINLELLLL-GVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HhhccccCCCCCchhhhhhHHHHHHh-hHHHHHHHHHHHHHHHHHH
Confidence 85 5655666778887654 3578999999999999954
No 413
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.53 E-value=6.3e+02 Score=30.00 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhccccc----ccccCC----------CCCCCHHHHHHHHHHHHHcCC
Q 009204 369 NKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPV----TVKLEP----------DDYMDYFRTDLLYQMGVAEEP 434 (540)
Q Consensus 369 ~~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv----~a~Le~----------d~~Gd~eeAe~lYqkALalDP 434 (540)
..|.+.+|.+=.++.|.---+.-.+.|.+.....+...+ ...+.. +...+.-.-+++|++|+++.|
T Consensus 482 ~~d~v~~~~~~~qe~peeiLs~iae~l~~~ln~tl~er~q~if~~~~~~~rrrti~aiqdk~~~ly~nirlyEkalklF~ 561 (776)
T KOG2235|consen 482 NSDIVEIWLRESQEVPEEILSVIAEKLNQELNTTLLERVQDIFAHQLVANRRRTISAIQDKCRQLYDNIRLYEKALKLFA 561 (776)
T ss_pred chhhHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 679999999999998873322222333333222211110 001000 011122234778999999998
Q ss_pred CCHHH
Q 009204 435 NNPLL 439 (540)
Q Consensus 435 ~Np~a 439 (540)
++...
T Consensus 562 ddtq~ 566 (776)
T KOG2235|consen 562 DDTQS 566 (776)
T ss_pred CchHH
Confidence 88643
No 414
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.40 E-value=1.3e+02 Score=36.10 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHH
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWA 491 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EE 491 (540)
-+|+|++|++.|..|=+. .+|.-++.+.||+-+-.++++..=. +-+| -.++.+.|.-.+. +..+++
T Consensus 746 ~~g~feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~-~~~We~ 814 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAE-MMEWEE 814 (1189)
T ss_pred hhcchhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHH-HHHHHH
Confidence 469999999999765332 1333333356666665555544211 1111 2467777765544 345777
Q ss_pred HHHHHHHHH
Q 009204 492 AEETYQQAM 500 (540)
Q Consensus 492 Aee~feKAL 500 (540)
|.+||.+.-
T Consensus 815 A~~yY~~~~ 823 (1189)
T KOG2041|consen 815 AAKYYSYCG 823 (1189)
T ss_pred HHHHHHhcc
Confidence 887777653
No 415
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.17 E-value=3.7e+02 Score=36.13 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=73.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------H---------HHH
Q 009204 413 PDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD--------A---------EAL 475 (540)
Q Consensus 413 ~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd--------A---------eAl 475 (540)
....|+++.|..+..+|.+..+ +.++...|..+- .+||...|..++++.++++-.+ | .+.
T Consensus 1680 aR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~ 1756 (2382)
T KOG0890|consen 1680 ARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLW-QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAK 1756 (2382)
T ss_pred HHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHH-hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHH
Confidence 3456999999999999999884 678889999999 4999999999999999875333 1 122
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204 476 SQYADFLWLV-RKDLWAAEETYQQAMAAEPNSSSYASKYASFLW 518 (540)
Q Consensus 476 ~NLA~~L~~~-rGD~EEAee~feKALeLDPdnpeal~NLA~~L~ 518 (540)
..++...-+. +-..++-+++|..|.+..|.--.-++.+|.+|-
T Consensus 1757 L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1757 LKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 2222221111 112456789999999999966666667775553
No 416
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=24.08 E-value=27 Score=33.46 Aligned_cols=41 Identities=27% Similarity=0.635 Sum_probs=29.9
Q ss_pred hccccCCCCCCCCCChhhhhhhcceeeeccccCcchhhHHHHHHHhhhh
Q 009204 133 EHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKE 181 (540)
Q Consensus 133 ~p~~~~~~p~~~~~~~~~~~~~~~ie~~~~~v~~p~slr~~krk~~~~e 181 (540)
++..+-+-|.| .|- ..+.++..|..+|...|+++++. ||.+
T Consensus 75 ~~~~l~~~~~p-~W~-~~~~vP~~v~~ka~~~gv~~t~~------qW~~ 115 (144)
T PF09655_consen 75 PAKDLPPDPNP-AWQ-DPDAVPEAVQEKAQEFGVPLTLE------QWAA 115 (144)
T ss_pred CcccCCCCCCc-ccc-ccCcCcHHHHHHHHHcCCCCCHH------HHhc
Confidence 34555555544 574 33688899999999999998874 8887
No 417
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.08 E-value=7.3e+02 Score=25.39 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH-----HHHHhcCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCC
Q 009204 415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQ-----FLHLVTKDYDRAEECFKRAI-QSDPPDAEALSQYADFLWLVRKD 488 (540)
Q Consensus 415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~-----~L~~~~GD~deAEe~feRAL-eLDPndAeAl~NLA~~L~~~rGD 488 (540)
+.|+...|...|..+-+..| -|.+..++|. +|. ..|-|++-....+..- .-+|--..+.-.||..-|+ .||
T Consensus 106 ~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLv-D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-agd 182 (221)
T COG4649 106 QKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLV-DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-AGD 182 (221)
T ss_pred hcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHh-ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-ccc
Confidence 45889999999999877665 4555544443 445 4888887666554321 1233333445556665564 699
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204 489 LWAAEETYQQAMAAEPNSSSYASKYASFLWN 519 (540)
Q Consensus 489 ~EEAee~feKALeLDPdnpeal~NLA~~L~~ 519 (540)
+.+|..+|.+... |.+.|....+.|.++.+
T Consensus 183 ~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 183 FAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred hHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 9999999998877 66666666666665544
No 418
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=23.77 E-value=89 Score=26.47 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=13.3
Q ss_pred CCCCCCHHHHHHHHHHHHHc
Q 009204 413 PDDYMDYFRTDLLYQMGVAE 432 (540)
Q Consensus 413 ~d~~Gd~eeAe~lYqkALal 432 (540)
.|..|+|++|..+|+++|..
T Consensus 16 ~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 16 KEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 45557777777777777653
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.67 E-value=1.3e+02 Score=27.59 Aligned_cols=44 Identities=16% Similarity=0.377 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009204 421 RTDLLYQMGVAE--EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAI 465 (540)
Q Consensus 421 eAe~lYqkALal--DP~Np~allNLA~~L~~~~GD~deAEe~feRAL 465 (540)
.+...|...... --..+..|..+|.++. ..|++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le-~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLE-KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhhC
Confidence 677777776664 4667889999999888 5999999999999986
No 420
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=2.5e+02 Score=34.08 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009204 438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQS-DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASF 516 (540)
Q Consensus 438 ~allNLA~~L~~~~GD~deAEe~feRALeL-DPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~ 516 (540)
.++..||..|+ .+||+++|..+|-++|.. +|... ...+ + . ..+..+-..|++..++.-=.+.+...-|-++
T Consensus 369 ~i~~kYgd~Ly-~Kgdf~~A~~qYI~tI~~le~s~V--i~kf---L-d-aq~IknLt~YLe~L~~~gla~~dhttlLLnc 440 (933)
T KOG2114|consen 369 EIHRKYGDYLY-GKGDFDEATDQYIETIGFLEPSEV--IKKF---L-D-AQRIKNLTSYLEALHKKGLANSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHcccCChHHH--HHHh---c-C-HHHHHHHHHHHHHHHHcccccchhHHHHHHH
Confidence 57888999999 599999999999999984 45322 2211 1 1 1234444455555555444444444445566
Q ss_pred HHHcCCCc
Q 009204 517 LWNTGGEE 524 (540)
Q Consensus 517 L~~~GR~E 524 (540)
|..+++.+
T Consensus 441 YiKlkd~~ 448 (933)
T KOG2114|consen 441 YIKLKDVE 448 (933)
T ss_pred HHHhcchH
Confidence 77777654
No 421
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=23.48 E-value=2.5e+02 Score=27.37 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe 466 (540)
+.-++-++.++...+.+-.+|..++.+|.+|. +.|+..+|.+.+++|=+
T Consensus 100 ~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~-klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKNEEINPEFLVKIANAYK-KLGNTREANELLKEACE 148 (161)
T ss_dssp T-HHHHHHHHHHH-----S-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-HhcchhhHHHHHHHHHH
Confidence 66777788888888777778999999999988 59999999999999866
No 422
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.42 E-value=1.8e+02 Score=24.55 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=11.6
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009204 450 VTKDYDRAEECFKRAIQ 466 (540)
Q Consensus 450 ~~GD~deAEe~feRALe 466 (540)
..|++++|..+|.+||+
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 46777777777776666
No 423
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.48 E-value=1.9e+02 Score=24.03 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009204 419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP 470 (540)
Q Consensus 419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn 470 (540)
.++|..++++|+..|-.. -+.-|..+| .+|.++|.++++.+|+
T Consensus 3 ~~~A~~l~~~Av~~D~~g---~y~eA~~~Y------~~aie~l~~~~k~e~~ 45 (75)
T cd02678 3 LQKAIELVKKAIEEDNAG---NYEEALRLY------QHALEYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHHHHHHHHHHcC---CHHHHHHHH------HHHHHHHHHHHhhCCC
Confidence 345666666666543321 111122233 3666666777666663
No 424
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.37 E-value=50 Score=28.19 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=12.2
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 009204 413 PDDYMDYFRTDLLYQMGVA 431 (540)
Q Consensus 413 ~d~~Gd~eeAe~lYqkALa 431 (540)
.|..|+|++|..+|+.||.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 4556666666666666665
No 425
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=21.46 E-value=1.6e+02 Score=31.91 Aligned_cols=47 Identities=15% Similarity=-0.067 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009204 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRA 464 (540)
Q Consensus 417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRA 464 (540)
|.+.+|..+.++++.++|-+...+-.+-+.|. ..||--.|..+|++-
T Consensus 293 g~~neAi~l~qr~ltldpL~e~~nk~lm~~la-~~gD~is~~khyery 339 (361)
T COG3947 293 GKPNEAIQLHQRALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYERY 339 (361)
T ss_pred CChHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHHH
Confidence 88999999999999999999998888888888 599988888887764
No 426
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.12 E-value=3.8e+02 Score=33.71 Aligned_cols=59 Identities=14% Similarity=-0.010 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204 436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA 501 (540)
Q Consensus 436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALe 501 (540)
.|.+|..+|.+-.+ .|...+|++.|-+| +|+..|..--.+. ...|.|++-++|+.-|.+
T Consensus 1103 ~p~vWsqlakAQL~-~~~v~dAieSyika-----dDps~y~eVi~~a-~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQ-GGLVKDAIESYIKA-----DDPSNYLEVIDVA-SRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred ChHHHHHHHHHHHh-cCchHHHHHHHHhc-----CCcHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 34555555555442 55556666665544 3444444333322 234566666666666555
No 427
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=20.95 E-value=3.1e+02 Score=28.88 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cC-----------------CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204 422 TDLLYQMGVAEEPNNPLLLLNYAQFLHLV----TK-----------------DYDRAEECFKRAIQSDPPDAEALSQYAD 480 (540)
Q Consensus 422 Ae~lYqkALalDP~Np~allNLA~~L~~~----~G-----------------D~deAEe~feRALeLDPndAeAl~NLA~ 480 (540)
-.+.++.=++..|+...+++.+|.++... +| -.++|..++.+|++++|....++..+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34455555677999999998888866432 11 2677999999999999999988776654
No 428
>TIGR01590 yir-bir-cir_Pla yir/bir/cir-family of variant antigens, Plasmodium-specific. The model only hits genes previously characterized as yir, bir, or cir genes above the trusted cutoff. In between trusted and noise is one gene from P. vivax (vir25) which has been characterized as a distant relative of the yir/bir/cir family. The vir family appears to be present in 600-1000 copies per haploid genome and is preferentially located in the sub-telomeric regions of the chromosomes. The genomic data for yoelii is consistent with this observation. It is not believed that there are any orthologs of this family in P. falciparum.
Probab=20.14 E-value=97 Score=30.92 Aligned_cols=28 Identities=25% Similarity=0.694 Sum_probs=22.6
Q ss_pred hhhHHHHHhHhhcC----------CchHHHHHHHHHhh
Q 009204 236 NSSFVWLFQQVFSR----------TPTLMVYVMILLAN 263 (540)
Q Consensus 236 ~aSfvwlfq~vfs~----------tP~lmv~vmilLan 263 (540)
.|.|.|||.|.|.. ...+..|+||-|..
T Consensus 36 nA~~l~Ll~~f~~~~~~~~~~~~~n~~~veYiilWLsy 73 (199)
T TIGR01590 36 NAGCLWLLNQLYGISKDFKYKNNNNKAFIEYIIIWLSY 73 (199)
T ss_pred HHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHH
Confidence 78999999999943 23577899999984
Done!