Query 009205
Match_columns 540
No_of_seqs 207 out of 690
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 21:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 2E-17 6.9E-22 132.9 4.6 48 4-55 7-54 (63)
2 4gat_A Nitrogen regulatory pro 99.7 1.7E-17 5.8E-22 134.2 3.6 50 2-55 7-56 (66)
3 2vut_I AREA, nitrogen regulato 99.6 1.7E-16 5.9E-21 119.0 3.7 42 5-50 2-43 (43)
4 1gnf_A Transcription factor GA 99.6 6.3E-16 2.2E-20 117.5 4.6 43 3-49 3-45 (46)
5 2kae_A GATA-type transcription 99.5 4E-16 1.4E-20 127.9 -0.6 50 2-54 6-55 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 1.5E-14 5E-19 127.3 4.2 48 4-55 59-106 (115)
7 4hc9_A Trans-acting T-cell-spe 99.3 2.4E-12 8.3E-17 113.2 5.7 75 4-86 5-79 (115)
8 2kqz_A Proteasomal ubiquitin r 92.6 0.057 1.9E-06 49.7 2.7 76 300-375 33-112 (155)
9 2kr0_A Proteasomal ubiquitin r 90.7 0.2 6.9E-06 52.5 4.8 76 300-375 289-368 (411)
10 1dl6_A Transcription factor II 42.2 12 0.00043 28.9 2.1 33 4-39 11-43 (58)
11 1qyp_A RNA polymerase II; tran 42.0 4 0.00014 31.0 -0.7 34 5-38 16-55 (57)
12 3cng_A Nudix hydrolase; struct 41.1 8.9 0.0003 33.9 1.3 34 2-35 1-34 (189)
13 1pft_A TFIIB, PFTFIIBN; N-term 39.9 12 0.0004 27.6 1.5 33 4-39 5-37 (50)
14 1k81_A EIF-2-beta, probable tr 39.6 4 0.00014 29.2 -1.0 29 6-35 2-30 (36)
15 3k7a_M Transcription initiatio 37.3 17 0.00057 36.3 2.7 30 4-34 21-50 (345)
16 2olm_A Nucleoporin-like protei 35.1 17 0.00059 32.8 2.2 45 4-50 25-69 (140)
17 2crr_A Stromal membrane-associ 34.6 31 0.0011 31.2 3.7 46 4-51 29-75 (141)
18 2owa_A Arfgap-like finger doma 31.4 21 0.00073 32.2 2.1 46 4-51 36-82 (138)
19 2iqj_A Stromal membrane-associ 29.9 23 0.00078 31.8 2.0 37 4-42 27-63 (134)
20 2g2k_A EIF-5, eukaryotic trans 28.2 11 0.00038 35.4 -0.3 29 6-34 98-127 (170)
21 2e9h_A EIF-5, eukaryotic trans 27.5 14 0.00046 34.4 0.1 30 5-34 104-134 (157)
22 1tfi_A Transcriptional elongat 26.5 13 0.00046 28.1 -0.0 34 4-37 9-48 (50)
23 3pt3_A E3 ubiquitin-protein li 26.1 24 0.00083 30.9 1.5 39 305-343 29-68 (118)
24 2b0o_E UPLC1; arfgap, structur 24.1 37 0.0013 32.2 2.5 36 4-41 42-77 (301)
25 2crw_A ARF GAP 3, ADP-ribosyla 23.5 40 0.0014 30.9 2.5 47 3-51 28-75 (149)
26 3h0g_L DNA-directed RNA polyme 23.2 26 0.00089 28.2 1.0 33 4-41 21-53 (63)
27 3dwd_A ADP-ribosylation factor 22.1 43 0.0015 30.8 2.4 47 3-51 37-84 (147)
28 2p57_A GTPase-activating prote 21.2 31 0.0011 31.6 1.2 46 4-51 37-83 (144)
29 3e13_X Putative iron-uptake AB 21.0 89 0.003 28.4 4.3 57 310-366 251-318 (322)
30 4bbr_M Transcription initiatio 20.8 23 0.00078 35.6 0.3 30 4-34 21-50 (345)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.67 E-value=2e-17 Score=132.88 Aligned_cols=48 Identities=31% Similarity=0.655 Sum_probs=45.5
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCCC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~r~d~i 55 (540)
...|.+|+++.||+||+||+|+ +|||||||||+++++. ||+.+++++|
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~---RP~~~~~~~i 54 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNIN---RPLTMKKEGI 54 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred CCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCC---CCcCcCCCcc
Confidence 4789999999999999999997 8999999999999997 9999999988
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.67 E-value=1.7e-17 Score=134.22 Aligned_cols=50 Identities=34% Similarity=0.740 Sum_probs=47.0
Q ss_pred CCCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCCC
Q 009205 2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (540)
Q Consensus 2 Gk~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~r~d~i 55 (540)
|..+.|+||++++||+||+||.|. +|||||||||++|+++ ||++++++.|
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~---RP~~~k~~~i 56 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSLKTDVI 56 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSC---CCGGGCCSCC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCC---Cchhhccccc
Confidence 557899999999999999999997 8999999999999998 9999999888
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.62 E-value=1.7e-16 Score=119.01 Aligned_cols=42 Identities=40% Similarity=0.884 Sum_probs=39.1
Q ss_pred CccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCC
Q 009205 5 GPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA 50 (540)
Q Consensus 5 r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~ 50 (540)
+.|++|+++.||+||+||+|. +|||||||||++||++ ||+++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSL 43 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC---CCCCC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC---CCCCC
Confidence 679999999999999999997 8999999999999998 88764
No 4
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.59 E-value=6.3e-16 Score=117.46 Aligned_cols=43 Identities=42% Similarity=0.891 Sum_probs=39.4
Q ss_pred CCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCC
Q 009205 3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLH 49 (540)
Q Consensus 3 k~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs 49 (540)
..+.|.+|++++||+||+||+|. +|||||||||++|+++ ||+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN---RPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC---CCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC---CCCC
Confidence 45789999999999999999996 8999999999999998 7764
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.54 E-value=4e-16 Score=127.89 Aligned_cols=50 Identities=32% Similarity=0.468 Sum_probs=41.0
Q ss_pred CCCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCC
Q 009205 2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEP 54 (540)
Q Consensus 2 Gk~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~r~d~ 54 (540)
+....|+||+|+.||+||+|+.+..+|||||||||+++++. ||+.++.+.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~---RP~~~~~~~ 55 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKT---RPVTAVNKY 55 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSC---CCTHHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCC---CCcccchhh
Confidence 35689999999999999995444448999999999999987 888877644
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.48 E-value=1.5e-14 Score=127.25 Aligned_cols=48 Identities=31% Similarity=0.647 Sum_probs=45.6
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCCC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~r~d~i 55 (540)
...|+||+|+.||+||+||+| .+|||||||||++|++. ||++++++.|
T Consensus 59 ~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~---rp~~~~~~~i 106 (115)
T 4hc9_A 59 GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN---RPLTMKKEGI 106 (115)
T ss_dssp TCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred cccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC---CCccccccch
Confidence 468999999999999999999 68999999999999998 9999999988
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.28 E-value=2.4e-12 Score=113.17 Aligned_cols=75 Identities=29% Similarity=0.509 Sum_probs=51.8
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhhcccC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDHRVSKVKSISINKNKDVKVLKRKS 83 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~r~d~i~~e~~R~~k~K~~Si~k~Ke~k~lKRK~ 83 (540)
.+.|.||+++.||+||+|++| .+|||||||||+.++++ ||+..++... ....+....-.++.......||+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~n---RP~~KpKKR~----~~~~~~~~~C~~C~t~~tp~WRr~ 76 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQN---RPLIKPKRRL----SAARRAGTSCANCQTTTTTLWRRN 76 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCCSSCCCCC----CCCCCTTCCCTTTCCSCCSSCEEC
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcccc---cccccccccc----cccccccccCCCcCCCCcceeEEC
Confidence 578999999999999999999 57999999999999998 6754432111 111111222236666667777775
Q ss_pred CCC
Q 009205 84 NYD 86 (540)
Q Consensus 84 n~~ 86 (540)
..+
T Consensus 77 ~~g 79 (115)
T 4hc9_A 77 ANG 79 (115)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 8
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=92.56 E-value=0.057 Score=49.74 Aligned_cols=76 Identities=26% Similarity=0.481 Sum_probs=57.4
Q ss_pred eeccccccchHHHhhhcCHH-HHHHHHhcCCCCCC-CCCCchhhhhhchhhhhhhhhHHHHHHhhhccc--cccCCCchh
Q 009205 300 EIDLNDILNFKEFVGHLTHE-EQQQLLKYLPLNDT-TVFPDSLNSMFDSLQFKENISSFQQLLAEGVFD--LSFLGVATE 375 (540)
Q Consensus 300 ~idl~d~~nf~ef~~~~t~e-eq~~l~k~lp~~d~-~~~p~sl~~mf~s~qfk~n~~~fqqll~~gvf~--~s~~~~k~e 375 (540)
.|||.|||.=|--+..|.++ -+++|+-|||.-.. .+=++-|+....||||...+..|..-|..|-+. +.-.|...+
T Consensus 33 ~~~L~dvLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~fs~AL~sG~l~~vl~qfgl~~~ 112 (155)
T 2kqz_A 33 QVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAE 112 (155)
T ss_dssp HHHHHHHTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHHHHHHHHTSSHHHHHHTTCCHH
T ss_pred CCCHHHHhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHhCCcHHHHHHcCCChh
Confidence 68999999644444444444 48999999997542 245688999999999999999999999999777 333455543
No 9
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=90.72 E-value=0.2 Score=52.50 Aligned_cols=76 Identities=26% Similarity=0.481 Sum_probs=59.1
Q ss_pred eeccccccchHHHhhhcCHH-HHHHHHhcCCCCCC-CCCCchhhhhhchhhhhhhhhHHHHHHhhhccc--cccCCCchh
Q 009205 300 EIDLNDILNFKEFVGHLTHE-EQQQLLKYLPLNDT-TVFPDSLNSMFDSLQFKENISSFQQLLAEGVFD--LSFLGVATE 375 (540)
Q Consensus 300 ~idl~d~~nf~ef~~~~t~e-eq~~l~k~lp~~d~-~~~p~sl~~mf~s~qfk~n~~~fqqll~~gvf~--~s~~~~k~e 375 (540)
.|||.|||.=|.-...|.++ -+++||-|||.-+. .+=++-|++...||||..-|..|-+-|..|-+. +.-.|.+.|
T Consensus 289 ~v~L~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL~sGqL~pll~qfgL~~~ 368 (411)
T 2kr0_A 289 QVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAE 368 (411)
T ss_dssp HHHGGGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHHHHTSSTHHHHHHTCCHH
T ss_pred CCCHHHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHHhcCCchHHHHHhCCChh
Confidence 68999999866666666655 56889999998653 245678999999999999999999999999766 233355444
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=42.17 E-value=12 Score=28.92 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhc
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTK 39 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~ 39 (540)
...|.+|+.+. +-.....| .++|..||+-+.-+
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCS
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEecc
Confidence 35799998755 44444455 57999999966543
No 11
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=42.01 E-value=4 Score=31.02 Aligned_cols=34 Identities=29% Similarity=0.652 Sum_probs=24.0
Q ss_pred CccccCCCCC----CCcccCCCCCC--CccchhhhhhHHh
Q 009205 5 GPCYHCGVTS----TPLWRNGPPEK--PVLCNACGSRWRT 38 (540)
Q Consensus 5 r~CsnCgTt~----TPlWRrGP~G~--~tLCNACGL~~k~ 38 (540)
..|..||-.. +-+||...++. -+.|..||-.|+-
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 4699999854 34577766552 2489999988764
No 12
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=41.14 E-value=8.9 Score=33.93 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=26.9
Q ss_pred CCCCccccCCCCCCCcccCCCCCCCccchhhhhh
Q 009205 2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSR 35 (540)
Q Consensus 2 Gk~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~ 35 (540)
|..+-|..||+..+....+|..+....|-.||.+
T Consensus 1 ~~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 1 GHMKFCSQCGGEVILRIPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp --CCBCTTTCCBCEEECCTTCSSCEEEETTTTEE
T ss_pred CCcccCchhCCccccccccCCCCcceECCCCCCc
Confidence 5678899999999887777777777799999953
No 13
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=39.88 E-value=12 Score=27.60 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhc
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTK 39 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~ 39 (540)
...|.+|+.+ ++-.....| ...|..||+-|..+
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCccccc
Confidence 4679999874 443333334 57999999966543
No 14
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=39.64 E-value=4 Score=29.23 Aligned_cols=29 Identities=31% Similarity=0.704 Sum_probs=21.7
Q ss_pred ccccCCCCCCCcccCCCCCCCccchhhhhh
Q 009205 6 PCYHCGVTSTPLWRNGPPEKPVLCNACGSR 35 (540)
Q Consensus 6 ~CsnCgTt~TPlWRrGP~G~~tLCNACGL~ 35 (540)
.|..|+...|-+-+++..- -.-|+|||-.
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCc
Confidence 5999999999998854222 2359999964
No 15
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=37.29 E-value=17 Score=36.32 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=21.1
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhh
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGS 34 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL 34 (540)
...|.+|+.+.+-+-.+-..| .++|..||+
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCe
Confidence 467999999753233334456 469999999
No 16
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=35.09 E-value=17 Score=32.78 Aligned_cols=45 Identities=16% Similarity=0.434 Sum_probs=31.5
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA 50 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~ 50 (540)
...|++||.. -|.|-.-..| ..+|-.|.--.|.-|+.-..|.+.|
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~~s~VrSl~l 69 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNPPHRVKSISM 69 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSSCCCEEETTT
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCCcceeeecCC
Confidence 4789999986 6889988888 5699999765555454323344444
No 17
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.59 E-value=31 Score=31.18 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=32.7
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC-CCCCCCCCC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR 51 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l-~~~RPLs~r 51 (540)
.+.|++|+.. -|.|-.-..| ..+|-.|.--.|.-|+. ...|.+.|.
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld 75 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLD 75 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSS
T ss_pred CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCC
Confidence 4689999987 4889988888 56999997666665643 223454444
No 18
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=31.40 E-value=21 Score=32.24 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=32.9
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC-CCCCCCCCC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR 51 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l-~~~RPLs~r 51 (540)
.+.|++|+... |.|-.-..| ..+|-.|.-..|.-|+. ...|.+.+.
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD 82 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLD 82 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTS
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcC
Confidence 47899999875 899998888 56999997766665653 123444444
No 19
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=29.91 E-value=23 Score=31.77 Aligned_cols=37 Identities=22% Similarity=0.481 Sum_probs=29.5
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL 42 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l 42 (540)
.+.|++|+... |.|-.-..| ..+|-.|.--.|.-|+.
T Consensus 27 N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 47899999875 889998888 56999997766665653
No 20
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=28.20 E-value=11 Score=35.39 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=21.5
Q ss_pred ccccCCCCCCCcccCCCCC-CCccchhhhh
Q 009205 6 PCYHCGVTSTPLWRNGPPE-KPVLCNACGS 34 (540)
Q Consensus 6 ~CsnCgTt~TPlWRrGP~G-~~tLCNACGL 34 (540)
.|..|+...|-+-+....+ --.-|+|||-
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 5999999999998832111 2247999997
No 21
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.51 E-value=14 Score=34.38 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=21.6
Q ss_pred CccccCCCCCCCcccCCCC-CCCccchhhhh
Q 009205 5 GPCYHCGVTSTPLWRNGPP-EKPVLCNACGS 34 (540)
Q Consensus 5 r~CsnCgTt~TPlWRrGP~-G~~tLCNACGL 34 (540)
-.|..|+...|-+-+.... ---.-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 3699999999999862111 12337999997
No 22
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.53 E-value=13 Score=28.15 Aligned_cols=34 Identities=29% Similarity=0.700 Sum_probs=23.9
Q ss_pred CCccccCCCCCCCcc----cCCCCCCC--ccchhhhhhHH
Q 009205 4 QGPCYHCGVTSTPLW----RNGPPEKP--VLCNACGSRWR 37 (540)
Q Consensus 4 ~r~CsnCgTt~TPlW----RrGP~G~~--tLCNACGL~~k 37 (540)
...|..|+-...-.| |+++++.- +.|..||-+|+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 357999998876555 55554422 38999998886
No 23
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=26.12 E-value=24 Score=30.92 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=24.8
Q ss_pred cccchHHHhhhcCHHHHHHHHhcCCCCCCCCCC-chhhhh
Q 009205 305 DILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFP-DSLNSM 343 (540)
Q Consensus 305 d~~nf~ef~~~~t~eeq~~l~k~lp~~d~~~~p-~sl~~m 343 (540)
-|-.|=+.++.||+|||.+||+|.-.-|.+.+. ..++.|
T Consensus 29 ~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l 68 (118)
T 3pt3_A 29 FKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM 68 (118)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHSCC------------
T ss_pred HHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccC
Confidence 367899999999999999999998876664442 344444
No 24
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=24.09 E-value=37 Score=32.17 Aligned_cols=36 Identities=25% Similarity=0.662 Sum_probs=28.2
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~ 41 (540)
...|+.|+... |.|-.-.-| ..+|-.|.---|.-|+
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 57899999965 899999999 5699999554454444
No 25
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.49 E-value=40 Score=30.88 Aligned_cols=47 Identities=21% Similarity=0.490 Sum_probs=33.4
Q ss_pred CCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCC-CCCCCCCC
Q 009205 3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLA-NYTPLHAR 51 (540)
Q Consensus 3 k~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~-~~RPLs~r 51 (540)
..+.|++|+.. -|.|-.-..| ..+|-.|.-..|.-|+.. ..|.+.+.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~LD 75 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTELD 75 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSSC
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeeccccC
Confidence 35789999976 5889998888 569999977666656532 23444443
No 26
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.22 E-value=26 Score=28.21 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=23.1
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~ 41 (540)
.-.|..||+..... .+.+.-|..||-+.-.+.+
T Consensus 21 ~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 21 IYLCADCGARNTIQ-----AKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp CCBCSSSCCBCCCC-----SSSCCCCSSSCCCCCBCCC
T ss_pred EEECCCCCCeeecC-----CCCceECCCCCcEEEEEec
Confidence 35799999988754 2345579999986655443
No 27
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=22.14 E-value=43 Score=30.81 Aligned_cols=47 Identities=21% Similarity=0.515 Sum_probs=33.3
Q ss_pred CCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC-CCCCCCCCC
Q 009205 3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR 51 (540)
Q Consensus 3 k~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l-~~~RPLs~r 51 (540)
..+.|++|+... |.|-.-..| ..+|-.|.-.-|.-|+. ...|.+.+.
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD 84 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMD 84 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC-
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCcccccccc
Confidence 357899999875 889988888 66999997766665653 223444444
No 28
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=21.16 E-value=31 Score=31.56 Aligned_cols=46 Identities=22% Similarity=0.522 Sum_probs=32.9
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC-CCCCCCCCC
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR 51 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l-~~~RPLs~r 51 (540)
.+.|++|+... |.|-.-..| ..+|-.|.-..|.-|+. ...|.+.+.
T Consensus 37 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl~LD 83 (144)
T 2p57_A 37 NKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLGVHLSFIRSTELD 83 (144)
T ss_dssp GGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESSSC
T ss_pred CCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCCCCCCeeeecccC
Confidence 47899999865 889988888 56999997766665653 223444444
No 29
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=20.95 E-value=89 Score=28.35 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=33.8
Q ss_pred HHHhhhcCHHH-HHHHHh---cCCCCCCCCCCchhhhh-------hchhhhhhhhhHHHHHHhhhccc
Q 009205 310 KEFVGHLTHEE-QQQLLK---YLPLNDTTVFPDSLNSM-------FDSLQFKENISSFQQLLAEGVFD 366 (540)
Q Consensus 310 ~ef~~~~t~ee-q~~l~k---~lp~~d~~~~p~sl~~m-------f~s~qfk~n~~~fqqll~~gvf~ 366 (540)
.+|+..|+.+| |..+.+ ++|....+..|+.++.. ++-.+.-+|..-..+|+.+.-|.
T Consensus 251 ~~fi~fl~s~e~q~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~ 318 (322)
T 3e13_X 251 KKFMEFMLSPEIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR 318 (322)
T ss_dssp HHHHHHHTSHHHHHHHHHTTCCEESSTTSCCCHHHHHHCCCCBCCSCHHHHHTTHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCHHHHHHHHhcCcccCCccCCCCcccCCCccccCCCcCCHHHHHHhHHHHHHHHHHhccc
Confidence 36777776665 555544 58998888888887753 22233344444444555554443
No 30
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.78 E-value=23 Score=35.63 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=20.0
Q ss_pred CCccccCCCCCCCcccCCCCCCCccchhhhh
Q 009205 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGS 34 (540)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL 34 (540)
...|.+|+...+-+--+-..| .++|..||+
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGl 50 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCB
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCC
Confidence 357999998444343333445 569999999
Done!