Query 009206
Match_columns 540
No_of_seqs 489 out of 3365
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 21:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 2.9E-42 6.4E-47 360.5 23.8 366 135-539 24-433 (493)
2 KOG4277 Uncharacterized conser 100.0 1.9E-27 4.1E-32 228.7 18.7 273 151-497 41-326 (468)
3 PTZ00102 disulphide isomerase; 99.9 1.5E-26 3.2E-31 251.0 23.5 352 137-538 33-423 (477)
4 TIGR01130 ER_PDI_fam protein d 99.9 2.7E-26 5.8E-31 247.5 23.5 366 137-538 2-413 (462)
5 KOG0713 Molecular chaperone (D 99.9 2.8E-25 6E-30 219.6 7.1 137 35-184 14-156 (336)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.7E-22 3.8E-27 175.5 7.7 107 126-249 3-113 (113)
7 KOG0912 Thiol-disulfide isomer 99.9 8.7E-21 1.9E-25 183.7 18.4 285 141-497 1-296 (375)
8 KOG0191 Thioredoxin/protein di 99.8 5.6E-20 1.2E-24 194.0 16.9 210 139-366 32-254 (383)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 4.7E-21 1E-25 163.5 7.0 100 137-249 2-101 (101)
10 COG0484 DnaJ DnaJ-class molecu 99.8 5.6E-21 1.2E-25 194.3 6.6 70 36-105 3-75 (371)
11 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.3E-20 4.9E-25 161.6 6.1 103 138-252 3-115 (116)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 6.6E-20 1.4E-24 157.1 6.4 101 137-249 2-104 (104)
13 cd02996 PDI_a_ERp44 PDIa famil 99.8 1E-19 2.2E-24 157.3 6.5 101 137-249 2-108 (108)
14 KOG0712 Molecular chaperone (D 99.8 1.9E-19 4.1E-24 180.7 6.9 72 36-107 3-74 (337)
15 PF00085 Thioredoxin: Thioredo 99.8 4.1E-19 8.8E-24 151.1 6.6 102 138-252 1-103 (103)
16 cd02994 PDI_a_TMX PDIa family, 99.8 1.4E-18 3E-23 148.2 7.2 98 137-250 2-100 (101)
17 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.9E-18 4E-23 149.2 7.5 105 138-249 2-108 (109)
18 cd03065 PDI_b_Calsequestrin_N 99.7 5.5E-18 1.2E-22 148.4 8.7 102 137-252 10-118 (120)
19 cd02993 PDI_a_APS_reductase PD 99.7 4.7E-18 1E-22 147.2 6.2 101 137-249 2-109 (109)
20 cd03001 PDI_a_P5 PDIa family, 99.7 1.2E-17 2.5E-22 142.5 7.5 100 138-249 2-102 (103)
21 KOG1731 FAD-dependent sulfhydr 99.7 2.6E-17 5.6E-22 172.4 10.4 223 136-373 39-285 (606)
22 PF01216 Calsequestrin: Calseq 99.7 1.1E-15 2.4E-20 151.5 21.3 279 124-463 26-316 (383)
23 cd03005 PDI_a_ERp46 PDIa famil 99.7 1E-17 2.3E-22 142.6 6.0 98 138-249 2-102 (102)
24 PRK14288 chaperone protein Dna 99.7 1.2E-17 2.6E-22 174.4 6.4 69 36-104 2-73 (369)
25 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 2.5E-17 5.4E-22 140.5 7.2 100 138-249 2-104 (104)
26 cd02963 TRX_DnaJ TRX domain, D 99.7 1.6E-17 3.5E-22 144.4 6.0 100 139-251 7-110 (111)
27 PTZ00443 Thioredoxin domain-co 99.7 1.2E-17 2.6E-22 161.8 5.8 104 136-252 30-138 (224)
28 KOG0910 Thioredoxin-like prote 99.7 2.4E-17 5.2E-22 146.5 6.6 103 137-252 44-147 (150)
29 KOG0190 Protein disulfide isom 99.7 2.1E-17 4.5E-22 174.0 7.2 104 136-252 366-472 (493)
30 PRK14296 chaperone protein Dna 99.7 2.2E-17 4.9E-22 172.5 6.7 69 36-104 3-73 (372)
31 cd02999 PDI_a_ERp44_like PDIa 99.7 6.5E-17 1.4E-21 137.8 6.2 84 151-249 16-100 (100)
32 PTZ00037 DnaJ_C chaperone prot 99.7 6.6E-17 1.4E-21 170.7 6.3 69 36-105 27-95 (421)
33 cd02956 ybbN ybbN protein fami 99.7 1.4E-16 3E-21 134.3 6.8 93 144-249 1-95 (96)
34 cd02997 PDI_a_PDIR PDIa family 99.7 1.3E-16 2.9E-21 136.1 6.7 101 138-249 2-104 (104)
35 TIGR01126 pdi_dom protein disu 99.7 2.2E-16 4.7E-21 134.1 7.4 99 141-252 1-101 (102)
36 PRK14286 chaperone protein Dna 99.6 1.2E-16 2.7E-21 167.1 6.4 70 36-105 3-75 (372)
37 COG3118 Thioredoxin domain-con 99.6 1.8E-16 3.9E-21 155.3 6.7 103 137-252 24-129 (304)
38 PRK14279 chaperone protein Dna 99.6 1.3E-16 2.7E-21 168.0 5.9 67 36-102 8-77 (392)
39 PRK14287 chaperone protein Dna 99.6 1.8E-16 3.9E-21 165.7 6.4 70 36-105 3-74 (371)
40 PRK09381 trxA thioredoxin; Pro 99.6 4.6E-16 9.9E-21 134.5 7.8 103 137-252 4-107 (109)
41 cd02998 PDI_a_ERp38 PDIa famil 99.6 4.8E-16 1E-20 132.7 7.7 100 138-249 2-105 (105)
42 cd02992 PDI_a_QSOX PDIa family 99.6 5.5E-16 1.2E-20 135.4 7.8 103 137-246 2-109 (114)
43 KOG0721 Molecular chaperone (D 99.6 7.8E-16 1.7E-20 143.2 9.1 95 9-103 69-168 (230)
44 PRK14282 chaperone protein Dna 99.6 3E-16 6.6E-21 164.2 6.9 69 36-104 3-75 (369)
45 PRK14276 chaperone protein Dna 99.6 3E-16 6.4E-21 164.8 6.6 70 36-105 3-74 (380)
46 PRK14298 chaperone protein Dna 99.6 2.9E-16 6.4E-21 164.4 6.4 70 36-105 4-75 (377)
47 KOG0716 Molecular chaperone (D 99.6 3E-16 6.5E-21 150.8 5.8 72 36-107 30-104 (279)
48 TIGR00424 APS_reduc 5'-adenyly 99.6 4.1E-16 8.9E-21 165.4 7.1 105 137-251 352-461 (463)
49 KOG0717 Molecular chaperone (D 99.6 7.2E-17 1.6E-21 164.6 1.3 69 36-104 7-79 (508)
50 PRK14283 chaperone protein Dna 99.6 3.9E-16 8.5E-21 163.8 6.4 69 36-104 4-74 (378)
51 PHA02278 thioredoxin-like prot 99.6 3.7E-16 7.9E-21 133.6 5.1 96 143-248 4-100 (103)
52 PF00226 DnaJ: DnaJ domain; I 99.6 4.8E-16 1E-20 121.2 5.3 60 38-97 1-64 (64)
53 TIGR02187 GlrX_arch Glutaredox 99.6 1.3E-14 2.8E-19 141.1 16.5 188 153-362 19-214 (215)
54 PRK14285 chaperone protein Dna 99.6 4.1E-16 8.9E-21 162.7 6.3 68 37-104 3-73 (365)
55 PRK14299 chaperone protein Dna 99.6 5E-16 1.1E-20 157.4 6.5 69 36-104 3-73 (291)
56 PRK14280 chaperone protein Dna 99.6 5.5E-16 1.2E-20 162.5 6.7 69 37-105 4-74 (376)
57 PRK14278 chaperone protein Dna 99.6 6.2E-16 1.4E-20 162.1 6.7 67 37-103 3-71 (378)
58 PRK14291 chaperone protein Dna 99.6 6.1E-16 1.3E-20 162.5 6.7 69 36-104 2-72 (382)
59 cd03000 PDI_a_TMX3 PDIa family 99.6 1.8E-15 3.8E-20 129.8 8.3 94 144-252 7-103 (104)
60 PRK14294 chaperone protein Dna 99.6 6.6E-16 1.4E-20 161.5 6.7 69 36-104 3-74 (366)
61 PRK14277 chaperone protein Dna 99.6 6.6E-16 1.4E-20 162.5 6.4 70 36-105 4-76 (386)
62 PLN02309 5'-adenylylsulfate re 99.6 1.2E-15 2.6E-20 161.8 7.6 104 137-252 346-456 (457)
63 cd02961 PDI_a_family Protein D 99.6 8.3E-16 1.8E-20 129.3 5.2 98 140-249 2-101 (101)
64 PRK14301 chaperone protein Dna 99.6 7.5E-16 1.6E-20 161.2 6.0 69 36-104 3-74 (373)
65 PRK14297 chaperone protein Dna 99.6 8.1E-16 1.8E-20 161.6 5.9 68 37-104 4-74 (380)
66 PRK14284 chaperone protein Dna 99.6 1E-15 2.3E-20 161.2 6.3 68 37-104 1-71 (391)
67 PRK14281 chaperone protein Dna 99.6 1.4E-15 3E-20 160.5 6.3 69 37-105 3-74 (397)
68 PRK14295 chaperone protein Dna 99.6 1.4E-15 3.1E-20 159.8 6.4 69 36-104 8-83 (389)
69 PRK10996 thioredoxin 2; Provis 99.6 2.1E-15 4.5E-20 136.5 5.9 103 137-252 36-138 (139)
70 PRK10767 chaperone protein Dna 99.6 2.2E-15 4.8E-20 158.0 6.3 69 36-104 3-74 (371)
71 cd02985 TRX_CDSP32 TRX family, 99.6 4E-15 8.6E-20 127.5 6.0 96 143-250 3-100 (103)
72 KOG0718 Molecular chaperone (D 99.6 2.4E-15 5.2E-20 153.4 5.2 70 36-105 8-83 (546)
73 PRK14290 chaperone protein Dna 99.6 3.8E-15 8.3E-20 155.7 6.6 68 37-104 3-74 (365)
74 PRK14300 chaperone protein Dna 99.6 3.6E-15 7.9E-20 156.1 6.3 68 37-104 3-72 (372)
75 PTZ00341 Ring-infected erythro 99.5 3.9E-15 8.4E-20 164.5 6.5 70 36-105 572-643 (1136)
76 TIGR02349 DnaJ_bact chaperone 99.5 4.9E-15 1.1E-19 154.5 6.4 68 38-105 1-70 (354)
77 PRK14293 chaperone protein Dna 99.5 6.2E-15 1.3E-19 154.6 6.7 68 37-104 3-72 (374)
78 cd02954 DIM1 Dim1 family; Dim1 99.5 2.3E-15 5E-20 130.0 2.6 76 144-228 3-80 (114)
79 PRK14289 chaperone protein Dna 99.5 6.3E-15 1.4E-19 155.2 6.3 69 36-104 4-75 (386)
80 PRK14292 chaperone protein Dna 99.5 6.7E-15 1.5E-19 154.3 6.3 67 37-103 2-70 (371)
81 cd02948 TRX_NDPK TRX domain, T 99.5 8.3E-15 1.8E-19 125.3 5.5 96 141-251 5-101 (102)
82 KOG0715 Molecular chaperone (D 99.5 8.4E-15 1.8E-19 147.3 6.3 68 36-103 42-111 (288)
83 KOG0691 Molecular chaperone (D 99.5 7.3E-15 1.6E-19 146.4 5.8 69 36-104 4-75 (296)
84 KOG0719 Molecular chaperone (D 99.5 8.3E-15 1.8E-19 137.4 5.5 68 36-103 13-85 (264)
85 cd02965 HyaE HyaE family; HyaE 99.5 1.6E-14 3.4E-19 124.0 6.6 96 138-246 12-109 (111)
86 TIGR01068 thioredoxin thioredo 99.5 1.8E-14 3.9E-19 121.7 6.6 99 141-252 1-100 (101)
87 cd02962 TMX2 TMX2 family; comp 99.5 1.2E-14 2.7E-19 132.7 5.5 90 136-228 28-120 (152)
88 PRK10266 curved DNA-binding pr 99.5 1.4E-14 2.9E-19 148.1 6.2 66 37-102 4-71 (306)
89 cd02957 Phd_like Phosducin (Ph 99.5 1.9E-14 4.2E-19 125.4 4.4 88 136-238 4-94 (113)
90 KOG0624 dsRNA-activated protei 99.5 4.8E-14 1E-18 139.5 7.5 67 34-100 391-463 (504)
91 PTZ00102 disulphide isomerase; 99.5 5.3E-14 1.2E-18 152.8 8.1 106 136-253 357-465 (477)
92 smart00271 DnaJ DnaJ molecular 99.5 5.5E-14 1.2E-18 108.0 5.7 55 37-91 1-59 (60)
93 cd02953 DsbDgamma DsbD gamma f 99.5 6E-14 1.3E-18 120.2 6.1 96 144-249 2-103 (104)
94 cd06257 DnaJ DnaJ domain or J- 99.5 7.1E-14 1.5E-18 105.4 5.8 52 38-89 1-55 (55)
95 PHA03102 Small T antigen; Revi 99.5 4.8E-14 1.1E-18 127.5 5.3 67 37-104 5-73 (153)
96 cd02989 Phd_like_TxnDC9 Phosdu 99.4 1.2E-13 2.6E-18 120.4 6.7 82 137-228 5-87 (113)
97 KOG0722 Molecular chaperone (D 99.4 1.1E-13 2.5E-18 131.0 6.5 92 11-102 7-100 (329)
98 KOG0191 Thioredoxin/protein di 99.4 1.6E-13 3.4E-18 145.0 8.3 106 137-254 145-253 (383)
99 cd02950 TxlA TRX-like protein 99.4 3.7E-13 8E-18 122.2 8.0 101 143-254 10-111 (142)
100 TIGR03835 termin_org_DnaJ term 99.4 3.3E-13 7.1E-18 146.4 6.7 67 37-103 2-70 (871)
101 PTZ00051 thioredoxin; Provisio 99.4 4.1E-13 8.9E-18 113.4 6.0 93 139-246 3-96 (98)
102 cd02984 TRX_PICOT TRX domain, 99.4 2.8E-13 6.1E-18 114.2 4.7 93 143-249 2-96 (97)
103 cd02947 TRX_family TRX family; 99.4 9.1E-13 2E-17 108.5 7.0 92 144-249 1-92 (93)
104 KOG0907 Thioredoxin [Posttrans 99.4 1.2E-12 2.6E-17 112.2 7.5 84 152-250 20-103 (106)
105 cd02949 TRX_NTR TRX domain, no 99.4 1.1E-12 2.3E-17 111.1 6.9 86 151-249 11-96 (97)
106 TIGR01130 ER_PDI_fam protein d 99.4 7.8E-13 1.7E-17 142.7 7.5 104 136-252 346-453 (462)
107 PLN00410 U5 snRNP protein, DIM 99.3 9E-13 1.9E-17 118.3 5.5 97 143-251 11-118 (142)
108 COG2214 CbpA DnaJ-class molecu 99.3 3.1E-12 6.7E-17 124.0 6.4 65 36-100 5-73 (237)
109 cd02975 PfPDO_like_N Pyrococcu 99.3 6.2E-12 1.3E-16 109.6 6.6 95 146-252 15-109 (113)
110 cd02987 Phd_like_Phd Phosducin 99.3 5.3E-12 1.2E-16 118.5 6.0 81 137-228 63-147 (175)
111 PF13848 Thioredoxin_6: Thiore 99.3 2.2E-10 4.7E-15 107.9 17.0 149 293-493 9-159 (184)
112 TIGR01295 PedC_BrcD bacterioci 99.2 8.6E-12 1.9E-16 110.1 6.2 104 138-249 8-120 (122)
113 cd02986 DLP Dim1 family, Dim1- 99.2 4.1E-12 8.9E-17 109.1 4.0 75 144-227 3-79 (114)
114 cd02982 PDI_b'_family Protein 99.2 1.1E-11 2.4E-16 105.6 6.5 88 152-252 11-102 (103)
115 PRK01356 hscB co-chaperone Hsc 99.2 1E-11 2.3E-16 115.0 6.6 63 37-99 2-72 (166)
116 PRK05014 hscB co-chaperone Hsc 99.2 1.6E-11 3.6E-16 114.4 6.4 62 37-98 1-72 (171)
117 COG5407 SEC63 Preprotein trans 99.2 2.6E-11 5.6E-16 123.5 7.3 94 11-104 69-173 (610)
118 PRK03578 hscB co-chaperone Hsc 99.2 3E-11 6.5E-16 112.9 7.0 65 34-98 3-77 (176)
119 PRK00294 hscB co-chaperone Hsc 99.2 5.2E-11 1.1E-15 110.8 7.0 63 36-98 3-75 (173)
120 cd02988 Phd_like_VIAF Phosduci 99.2 3.9E-11 8.4E-16 114.2 6.0 79 137-228 83-164 (192)
121 TIGR00411 redox_disulf_1 small 99.1 1.2E-10 2.5E-15 94.9 7.8 80 156-252 2-81 (82)
122 KOG0908 Thioredoxin-like prote 99.1 6.5E-11 1.4E-15 112.8 6.8 102 138-254 3-107 (288)
123 PTZ00100 DnaJ chaperone protei 99.1 4.6E-11 1E-15 102.6 5.1 52 36-88 64-115 (116)
124 cd02951 SoxW SoxW family; SoxW 99.1 6.9E-11 1.5E-15 104.7 5.6 97 147-252 7-118 (125)
125 KOG0720 Molecular chaperone (D 99.1 7.3E-11 1.6E-15 121.2 5.3 67 36-102 234-302 (490)
126 PTZ00062 glutaredoxin; Provisi 99.1 1.3E-09 2.9E-14 104.2 11.7 162 143-336 6-174 (204)
127 KOG0714 Molecular chaperone (D 99.0 1.8E-10 3.9E-15 116.6 4.2 70 36-105 2-75 (306)
128 cd02952 TRP14_like Human TRX-r 99.0 2E-10 4.4E-15 100.4 3.6 79 143-227 9-101 (119)
129 PHA02624 large T antigen; Prov 99.0 2.7E-10 5.9E-15 122.8 4.8 60 36-96 10-71 (647)
130 PF13848 Thioredoxin_6: Thiore 99.0 2.9E-08 6.3E-13 93.4 16.5 169 171-362 8-184 (184)
131 KOG0550 Molecular chaperone (D 98.9 6.5E-10 1.4E-14 113.1 4.0 67 34-100 370-440 (486)
132 PRK09430 djlA Dna-J like membr 98.9 7.7E-10 1.7E-14 110.6 4.5 54 36-89 199-262 (267)
133 cd02959 ERp19 Endoplasmic reti 98.9 1.2E-09 2.6E-14 95.8 3.3 70 151-228 17-89 (117)
134 PHA02125 thioredoxin-like prot 98.8 3.8E-09 8.3E-14 84.9 5.4 69 157-247 2-71 (75)
135 TIGR02187 GlrX_arch Glutaredox 98.8 7.5E-09 1.6E-13 100.7 8.4 82 153-251 133-214 (215)
136 TIGR00412 redox_disulf_2 small 98.8 5.5E-09 1.2E-13 84.2 5.6 73 157-249 2-75 (76)
137 PRK01773 hscB co-chaperone Hsc 98.8 1E-08 2.2E-13 95.5 6.3 61 37-97 2-72 (173)
138 PRK00293 dipZ thiol:disulfide 98.8 8.7E-09 1.9E-13 114.0 6.7 101 143-252 460-569 (571)
139 KOG1150 Predicted molecular ch 98.8 8.5E-09 1.8E-13 94.9 5.4 65 35-99 51-120 (250)
140 KOG0913 Thiol-disulfide isomer 98.8 2.3E-09 5E-14 101.6 1.6 101 136-252 24-125 (248)
141 PF13098 Thioredoxin_2: Thiore 98.7 9.5E-09 2.1E-13 88.9 4.4 89 151-249 3-112 (112)
142 PRK03147 thiol-disulfide oxido 98.6 1.2E-07 2.7E-12 88.4 8.4 91 152-251 60-170 (173)
143 TIGR00714 hscB Fe-S protein as 98.6 9.1E-08 2E-12 88.0 6.0 51 49-99 3-61 (157)
144 TIGR02740 TraF-like TraF-like 98.6 1.4E-07 3.1E-12 94.7 7.9 90 152-252 165-263 (271)
145 cd02973 TRX_GRX_like Thioredox 98.6 1E-07 2.2E-12 74.6 5.2 57 156-222 2-58 (67)
146 cd02967 mauD Methylamine utili 98.5 1.7E-07 3.8E-12 81.1 6.8 63 152-220 20-82 (114)
147 cd03011 TlpA_like_ScsD_MtbDsbE 98.5 3.3E-07 7.1E-12 80.5 7.3 93 141-247 8-120 (123)
148 cd02955 SSP411 TRX domain, SSP 98.5 1.2E-07 2.7E-12 83.7 4.3 80 145-227 7-91 (124)
149 TIGR02738 TrbB type-F conjugat 98.5 3.9E-07 8.5E-12 83.6 7.6 94 150-251 47-151 (153)
150 KOG0914 Thioredoxin-like prote 98.5 1.7E-07 3.6E-12 87.9 4.7 88 138-228 126-217 (265)
151 PRK14018 trifunctional thiored 98.4 5.5E-07 1.2E-11 97.5 8.5 88 151-251 54-171 (521)
152 cd03009 TryX_like_TryX_NRX Try 98.4 5E-07 1.1E-11 80.5 6.6 69 152-226 17-109 (131)
153 PRK11509 hydrogenase-1 operon 98.4 1E-06 2.2E-11 78.2 7.8 101 140-253 21-124 (132)
154 COG5269 ZUO1 Ribosome-associat 98.4 3.1E-07 6.7E-12 88.4 4.7 67 36-102 42-116 (379)
155 cd03010 TlpA_like_DsbE TlpA-li 98.4 4E-07 8.6E-12 80.6 4.9 82 152-245 24-126 (127)
156 cd02964 TryX_like_family Trypa 98.4 7.3E-07 1.6E-11 79.7 6.5 69 152-226 16-109 (132)
157 cd03007 PDI_a_ERp29_N PDIa fam 98.3 5E-06 1.1E-10 72.3 10.3 98 262-363 6-115 (116)
158 cd02966 TlpA_like_family TlpA- 98.3 9.7E-07 2.1E-11 75.2 5.9 68 153-226 19-107 (116)
159 cd03026 AhpF_NTD_C TRX-GRX-lik 98.3 1.8E-06 4E-11 71.7 6.9 76 153-246 12-87 (89)
160 cd02983 P5_C P5 family, C-term 98.2 4.6E-06 1E-10 74.4 8.8 85 366-495 2-91 (130)
161 TIGR00385 dsbE periplasmic pro 98.2 1.9E-06 4.2E-11 80.8 6.1 95 151-252 61-170 (173)
162 PRK15412 thiol:disulfide inter 98.2 3.1E-06 6.6E-11 80.4 7.3 94 152-252 67-175 (185)
163 cd03065 PDI_b_Calsequestrin_N 98.2 1.8E-05 4E-10 69.4 10.5 94 262-362 14-117 (120)
164 PF13905 Thioredoxin_8: Thiore 98.1 2.3E-06 4.9E-11 71.6 4.2 44 153-196 1-46 (95)
165 cd02958 UAS UAS family; UAS is 98.1 6.4E-06 1.4E-10 71.6 7.2 98 145-252 5-110 (114)
166 cd03008 TryX_like_RdCVF Trypar 98.1 4.6E-06 1E-10 75.8 6.2 75 152-226 24-122 (146)
167 KOG0568 Molecular chaperone (D 98.1 3.8E-06 8.3E-11 79.2 5.3 54 37-90 47-103 (342)
168 PF00085 Thioredoxin: Thioredo 98.1 8.6E-06 1.9E-10 68.6 7.0 96 262-363 4-103 (103)
169 PLN02919 haloacid dehalogenase 98.0 8.9E-06 1.9E-10 96.2 8.2 92 152-253 419-536 (1057)
170 KOG1789 Endocytosis protein RM 98.0 5E-06 1.1E-10 92.7 5.0 52 37-88 1281-1336(2235)
171 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 2.4E-05 5.2E-10 66.6 7.9 79 280-360 21-104 (104)
172 cd03002 PDI_a_MPD1_like PDI fa 98.0 3.1E-05 6.8E-10 66.3 8.6 92 268-361 10-109 (109)
173 COG4232 Thiol:disulfide interc 98.0 5.3E-06 1.2E-10 89.3 4.3 102 141-252 459-567 (569)
174 PRK13728 conjugal transfer pro 98.0 1.7E-05 3.8E-10 74.3 6.8 85 157-252 73-170 (181)
175 PF13899 Thioredoxin_7: Thiore 98.0 4.8E-06 1E-10 68.0 2.6 64 151-224 15-81 (82)
176 cd03006 PDI_a_EFP1_N PDIa fami 97.9 3.2E-05 6.9E-10 67.3 7.8 80 278-360 29-113 (113)
177 cd01659 TRX_superfamily Thiore 97.9 1.8E-05 3.8E-10 59.1 5.2 63 157-226 1-63 (69)
178 cd02981 PDI_b_family Protein D 97.9 7E-05 1.5E-09 62.8 8.8 87 268-363 10-97 (97)
179 cd02996 PDI_a_ERp44 PDIa famil 97.9 6.3E-05 1.4E-09 64.6 8.6 88 268-360 11-108 (108)
180 cd03012 TlpA_like_DipZ_like Tl 97.9 2.8E-05 6E-10 68.8 6.1 73 152-224 22-113 (126)
181 cd03003 PDI_a_ERdj5_N PDIa fam 97.9 6.2E-05 1.3E-09 63.7 7.9 78 279-359 19-100 (101)
182 smart00594 UAS UAS domain. 97.8 3.4E-05 7.3E-10 68.1 6.1 98 145-249 15-121 (122)
183 TIGR02196 GlrX_YruB Glutaredox 97.8 3.6E-05 7.7E-10 60.5 5.7 71 157-249 2-73 (74)
184 TIGR02661 MauD methylamine deh 97.8 7.5E-05 1.6E-09 71.1 8.8 91 152-250 73-176 (189)
185 cd03066 PDI_b_Calsequestrin_mi 97.8 0.00014 3E-09 62.0 9.5 94 262-364 5-101 (102)
186 cd03069 PDI_b_ERp57 PDIb famil 97.7 0.00018 3.9E-09 61.6 9.0 88 266-363 9-103 (104)
187 cd02993 PDI_a_APS_reductase PD 97.7 0.00011 2.4E-09 63.3 7.7 92 268-360 11-109 (109)
188 PLN02399 phospholipid hydroper 97.7 0.00019 4.1E-09 70.5 9.9 97 152-252 98-233 (236)
189 cd03001 PDI_a_P5 PDIa family, 97.7 0.00016 3.5E-09 61.0 8.1 68 291-360 35-102 (103)
190 PTZ00056 glutathione peroxidas 97.7 0.00021 4.7E-09 68.6 9.6 57 152-208 38-103 (199)
191 COG0526 TrxA Thiol-disulfide i 97.7 7.9E-05 1.7E-09 62.8 6.0 68 153-227 32-100 (127)
192 TIGR01126 pdi_dom protein disu 97.6 0.00039 8.4E-09 58.3 9.5 83 278-363 13-101 (102)
193 KOG0723 Molecular chaperone (D 97.6 0.00011 2.3E-09 61.5 5.4 49 41-90 60-108 (112)
194 cd02960 AGR Anterior Gradient 97.6 2.9E-05 6.4E-10 68.8 2.1 73 145-227 11-90 (130)
195 cd02999 PDI_a_ERp44_like PDIa 97.6 0.0002 4.3E-09 60.8 6.7 79 278-360 18-100 (100)
196 PRK11509 hydrogenase-1 operon 97.6 0.00093 2E-08 59.4 11.0 96 268-369 27-129 (132)
197 TIGR00424 APS_reduc 5'-adenyly 97.5 0.00031 6.7E-09 75.4 9.3 100 262-362 356-461 (463)
198 PF13192 Thioredoxin_3: Thiore 97.5 0.00014 3E-09 58.5 4.8 73 158-250 3-76 (76)
199 PLN02412 probable glutathione 97.5 0.00052 1.1E-08 63.9 9.4 43 152-194 28-71 (167)
200 cd02956 ybbN ybbN protein fami 97.5 0.00051 1.1E-08 57.3 8.5 80 279-361 13-96 (96)
201 KOG4277 Uncharacterized conser 97.5 0.00078 1.7E-08 66.5 10.5 106 268-375 34-143 (468)
202 PF07912 ERp29_N: ERp29, N-ter 97.5 0.00042 9.2E-09 60.0 7.3 106 138-252 6-118 (126)
203 cd02998 PDI_a_ERp38 PDIa famil 97.4 0.00056 1.2E-08 57.7 7.9 81 279-360 19-105 (105)
204 cd02981 PDI_b_family Protein D 97.4 0.00042 9E-09 58.0 6.8 87 146-251 10-96 (97)
205 TIGR03143 AhpF_homolog putativ 97.4 0.0035 7.6E-08 69.7 16.0 184 152-360 365-554 (555)
206 cd02965 HyaE HyaE family; HyaE 97.4 0.0019 4.1E-08 55.8 10.7 84 268-357 20-109 (111)
207 TIGR02200 GlrX_actino Glutared 97.4 0.00017 3.7E-09 57.4 3.9 58 157-227 2-61 (77)
208 KOG0910 Thioredoxin-like prote 97.4 0.00067 1.5E-08 61.1 7.9 81 280-363 63-147 (150)
209 cd02963 TRX_DnaJ TRX domain, D 97.4 0.00098 2.1E-08 57.6 8.7 82 278-362 24-110 (111)
210 PF08534 Redoxin: Redoxin; In 97.4 0.0002 4.4E-09 64.7 4.6 75 152-226 27-124 (146)
211 cd00340 GSH_Peroxidase Glutath 97.4 0.00059 1.3E-08 62.4 7.7 42 152-194 21-63 (152)
212 cd03005 PDI_a_ERp46 PDIa famil 97.4 0.00077 1.7E-08 56.7 7.7 78 280-360 19-102 (102)
213 COG3118 Thioredoxin domain-con 97.4 0.00055 1.2E-08 68.2 7.7 98 262-364 28-130 (304)
214 TIGR02540 gpx7 putative glutat 97.3 0.0014 2.9E-08 60.1 9.8 42 152-193 21-63 (153)
215 cd02997 PDI_a_PDIR PDIa family 97.3 0.0012 2.6E-08 55.6 8.2 89 268-360 10-104 (104)
216 cd02953 DsbDgamma DsbD gamma f 97.3 0.00092 2E-08 56.8 7.4 64 298-361 38-104 (104)
217 cd02969 PRX_like1 Peroxiredoxi 97.3 0.0011 2.5E-08 61.7 8.6 96 152-252 24-151 (171)
218 PLN02309 5'-adenylylsulfate re 97.3 0.00094 2E-08 71.7 8.9 99 262-362 350-455 (457)
219 cd02995 PDI_a_PDI_a'_C PDIa fa 97.2 0.0011 2.4E-08 55.8 7.1 79 279-360 19-104 (104)
220 cd02961 PDI_a_family Protein D 97.2 0.0012 2.7E-08 54.6 7.3 68 291-360 32-101 (101)
221 cd02994 PDI_a_TMX PDIa family, 97.2 0.0017 3.8E-08 54.7 8.1 79 280-362 19-101 (101)
222 cd03068 PDI_b_ERp72 PDIb famil 97.2 0.0027 5.9E-08 54.6 9.2 92 264-363 7-107 (107)
223 TIGR01068 thioredoxin thioredo 97.2 0.0028 6.1E-08 52.7 9.0 69 292-363 32-100 (101)
224 cd02950 TxlA TRX-like protein 97.1 0.0022 4.8E-08 58.1 8.6 86 278-363 20-109 (142)
225 PRK09381 trxA thioredoxin; Pro 97.1 0.0026 5.7E-08 54.4 8.7 82 279-363 22-107 (109)
226 PF13728 TraF: F plasmid trans 97.1 0.0011 2.3E-08 64.5 6.7 86 152-247 119-212 (215)
227 PHA02278 thioredoxin-like prot 97.0 0.0031 6.7E-08 53.9 8.2 80 279-359 15-100 (103)
228 cd02982 PDI_b'_family Protein 97.0 0.0015 3.3E-08 55.1 6.3 82 279-362 13-101 (103)
229 PF02114 Phosducin: Phosducin; 97.0 0.00063 1.4E-08 68.0 4.1 105 137-252 126-237 (265)
230 PF00578 AhpC-TSA: AhpC/TSA fa 97.0 0.0009 1.9E-08 58.4 4.5 75 152-226 24-118 (124)
231 PRK10996 thioredoxin 2; Provis 97.0 0.0031 6.8E-08 56.9 8.2 82 279-363 53-138 (139)
232 KOG0912 Thiol-disulfide isomer 96.9 0.0027 6E-08 63.0 7.9 123 290-426 29-155 (375)
233 cd03000 PDI_a_TMX3 PDIa family 96.9 0.0052 1.1E-07 52.2 8.7 79 280-362 17-102 (104)
234 cd03067 PDI_b_PDIR_N PDIb fami 96.9 0.00098 2.1E-08 55.4 3.9 97 143-251 9-110 (112)
235 KOG2501 Thioredoxin, nucleored 96.8 0.0028 6E-08 57.6 6.4 70 152-227 32-126 (157)
236 TIGR02180 GRX_euk Glutaredoxin 96.8 0.00083 1.8E-08 54.4 2.8 60 157-226 1-62 (84)
237 KOG2603 Oligosaccharyltransfer 96.8 0.006 1.3E-07 61.0 9.1 108 136-252 40-165 (331)
238 cd03072 PDI_b'_ERp44 PDIb' fam 96.7 0.0043 9.4E-08 53.7 6.5 102 138-252 1-107 (111)
239 cd02949 TRX_NTR TRX domain, no 96.7 0.007 1.5E-07 50.7 7.5 81 278-361 13-97 (97)
240 TIGR02739 TraF type-F conjugat 96.7 0.0042 9E-08 61.7 6.9 91 152-252 149-247 (256)
241 cd02948 TRX_NDPK TRX domain, T 96.7 0.0096 2.1E-07 50.5 8.3 87 268-362 10-101 (102)
242 PTZ00443 Thioredoxin domain-co 96.7 0.0047 1E-07 60.3 7.1 81 280-364 55-139 (224)
243 KOG0907 Thioredoxin [Posttrans 96.7 0.016 3.4E-07 49.8 9.5 81 278-363 21-105 (106)
244 cd03017 PRX_BCP Peroxiredoxin 96.6 0.0049 1.1E-07 55.0 6.6 55 153-207 23-79 (140)
245 KOG3192 Mitochondrial J-type c 96.6 0.0019 4.2E-08 57.9 3.7 67 34-100 5-83 (168)
246 cd02975 PfPDO_like_N Pyrococcu 96.6 0.015 3.3E-07 50.4 9.4 80 280-362 24-108 (113)
247 cd02989 Phd_like_TxnDC9 Phosdu 96.6 0.012 2.5E-07 51.1 8.6 78 280-360 24-112 (113)
248 TIGR01626 ytfJ_HI0045 conserve 96.6 0.0061 1.3E-07 57.5 7.3 92 152-247 58-174 (184)
249 cd02991 UAS_ETEA UAS family, E 96.6 0.0036 7.8E-08 54.7 5.2 94 151-252 15-112 (116)
250 cd02985 TRX_CDSP32 TRX family, 96.6 0.016 3.5E-07 49.2 9.1 90 268-361 6-100 (103)
251 PF07912 ERp29_N: ERp29, N-ter 96.6 0.02 4.3E-07 49.8 9.3 95 268-366 14-121 (126)
252 cd02983 P5_C P5 family, C-term 96.5 0.01 2.3E-07 52.9 8.0 86 278-365 20-116 (130)
253 cd02957 Phd_like Phosducin (Ph 96.5 0.015 3.2E-07 50.3 8.6 60 279-342 25-88 (113)
254 cd03015 PRX_Typ2cys Peroxiredo 96.4 0.017 3.6E-07 54.0 8.6 44 152-195 28-73 (173)
255 cd02954 DIM1 Dim1 family; Dim1 96.4 0.0086 1.9E-07 52.0 6.0 62 278-341 14-79 (114)
256 PRK13703 conjugal pilus assemb 96.4 0.0076 1.6E-07 59.5 6.4 91 152-252 142-240 (248)
257 PRK10606 btuE putative glutath 96.3 0.0088 1.9E-07 56.6 6.4 55 152-207 24-88 (183)
258 KOG0911 Glutaredoxin-related p 96.3 0.026 5.5E-07 54.1 9.5 80 151-244 15-94 (227)
259 cd02987 Phd_like_Phd Phosducin 96.3 0.021 4.4E-07 53.7 8.6 80 279-362 84-173 (175)
260 PRK00522 tpx lipid hydroperoxi 96.3 0.0077 1.7E-07 56.1 5.7 55 152-207 43-98 (167)
261 PTZ00256 glutathione peroxidas 96.2 0.028 6E-07 53.2 9.1 42 153-194 40-83 (183)
262 TIGR03137 AhpC peroxiredoxin. 96.2 0.027 5.9E-07 53.4 9.1 44 152-195 30-75 (187)
263 PF06110 DUF953: Eukaryotic pr 96.1 0.0027 5.9E-08 55.5 1.7 77 151-227 17-100 (119)
264 cd02970 PRX_like2 Peroxiredoxi 96.1 0.008 1.7E-07 54.1 4.7 55 153-207 23-79 (149)
265 cd02976 NrdH NrdH-redoxin (Nrd 96.0 0.012 2.7E-07 45.6 5.0 54 157-222 2-56 (73)
266 KOG3425 Uncharacterized conser 96.0 0.0052 1.1E-07 52.9 2.8 79 145-225 14-104 (128)
267 cd02947 TRX_family TRX family; 96.0 0.037 7.9E-07 44.5 7.9 78 279-360 11-92 (93)
268 TIGR03143 AhpF_homolog putativ 96.0 0.016 3.4E-07 64.6 7.4 79 153-249 475-554 (555)
269 cd02984 TRX_PICOT TRX domain, 96.0 0.036 7.8E-07 46.0 7.9 87 269-360 6-96 (97)
270 cd03014 PRX_Atyp2cys Peroxired 95.9 0.014 3E-07 52.4 5.7 55 152-207 25-80 (143)
271 PRK09437 bcp thioredoxin-depen 95.9 0.018 3.8E-07 52.6 6.2 56 152-207 29-86 (154)
272 PRK11200 grxA glutaredoxin 1; 95.9 0.0096 2.1E-07 48.7 3.9 80 156-252 2-82 (85)
273 cd02951 SoxW SoxW family; SoxW 95.9 0.028 6.1E-07 49.3 7.1 43 320-362 74-117 (125)
274 cd03018 PRX_AhpE_like Peroxire 95.9 0.014 3.1E-07 52.6 5.4 54 154-207 29-84 (149)
275 cd03020 DsbA_DsbC_DsbG DsbA fa 95.7 0.014 2.9E-07 55.9 4.8 84 152-249 76-197 (197)
276 KOG1672 ATP binding protein [P 95.7 0.009 1.9E-07 55.8 3.3 76 143-228 74-149 (211)
277 PRK10382 alkyl hydroperoxide r 95.6 0.068 1.5E-06 50.8 9.0 92 152-252 30-155 (187)
278 cd02971 PRX_family Peroxiredox 95.6 0.026 5.6E-07 50.3 5.8 55 152-206 21-77 (140)
279 cd02968 SCO SCO (an acronym fo 95.6 0.019 4.2E-07 51.2 5.0 43 152-194 21-68 (142)
280 PLN00410 U5 snRNP protein, DIM 95.5 0.087 1.9E-06 47.6 8.8 91 268-362 14-118 (142)
281 cd03073 PDI_b'_ERp72_ERp57 PDI 95.4 0.031 6.7E-07 48.4 5.6 98 140-252 3-110 (111)
282 PRK10877 protein disulfide iso 95.4 0.043 9.3E-07 54.0 7.2 88 151-252 105-230 (232)
283 PRK15317 alkyl hydroperoxide r 95.3 0.045 9.8E-07 60.4 7.8 82 153-252 116-197 (517)
284 cd02962 TMX2 TMX2 family; comp 95.3 0.055 1.2E-06 49.6 7.0 71 268-341 38-119 (152)
285 TIGR00411 redox_disulf_1 small 95.3 0.1 2.2E-06 41.7 7.8 67 289-362 14-80 (82)
286 cd02986 DLP Dim1 family, Dim1- 95.0 0.098 2.1E-06 45.3 7.4 69 277-347 13-85 (114)
287 cd02992 PDI_a_QSOX PDIa family 94.9 0.12 2.5E-06 44.9 7.6 63 279-341 20-89 (114)
288 PF07449 HyaE: Hydrogenase-1 e 94.9 0.031 6.8E-07 47.8 3.8 82 137-227 10-93 (107)
289 TIGR01295 PedC_BrcD bacterioci 94.8 0.18 3.8E-06 44.4 8.7 80 279-361 24-121 (122)
290 cd02066 GRX_family Glutaredoxi 94.7 0.031 6.8E-07 43.0 3.3 56 157-226 2-58 (72)
291 cd02972 DsbA_family DsbA famil 94.6 0.045 9.8E-07 44.7 4.2 32 157-188 1-32 (98)
292 cd03419 GRX_GRXh_1_2_like Glut 94.5 0.028 6.2E-07 45.1 2.7 58 157-226 2-61 (82)
293 cd02988 Phd_like_VIAF Phosduci 94.4 0.16 3.6E-06 48.4 7.9 78 279-362 103-190 (192)
294 PRK15000 peroxidase; Provision 94.1 0.32 7E-06 46.7 9.5 98 152-252 33-161 (200)
295 PF00462 Glutaredoxin: Glutare 94.1 0.038 8.2E-07 41.8 2.4 54 157-222 1-55 (60)
296 PF01216 Calsequestrin: Calseq 94.1 0.43 9.4E-06 48.8 10.4 101 268-375 44-155 (383)
297 PRK13190 putative peroxiredoxi 93.9 0.32 7E-06 46.7 9.0 94 153-252 27-153 (202)
298 COG1076 DjlA DnaJ-domain-conta 93.9 0.099 2.1E-06 49.0 5.3 51 37-87 113-173 (174)
299 PTZ00051 thioredoxin; Provisio 93.6 0.33 7.3E-06 40.2 7.6 75 278-357 18-96 (98)
300 PF14595 Thioredoxin_9: Thiore 93.5 0.034 7.3E-07 49.5 1.4 66 153-226 41-107 (129)
301 PTZ00253 tryparedoxin peroxida 93.5 0.49 1.1E-05 45.2 9.5 44 153-196 36-81 (199)
302 PF03190 Thioredox_DsbH: Prote 93.5 0.14 3E-06 47.3 5.3 69 150-227 34-113 (163)
303 TIGR02190 GlrX-dom Glutaredoxi 93.3 0.094 2E-06 42.2 3.5 59 154-226 7-65 (79)
304 COG2143 Thioredoxin-related pr 93.3 0.27 5.7E-06 44.6 6.5 90 148-246 37-142 (182)
305 KOG2640 Thioredoxin [Function 93.3 0.07 1.5E-06 53.6 3.2 87 152-252 75-161 (319)
306 TIGR02183 GRXA Glutaredoxin, G 93.2 0.09 2E-06 43.1 3.4 79 157-252 2-81 (86)
307 KOG3414 Component of the U4/U6 93.2 0.14 3.1E-06 44.5 4.5 72 147-227 15-88 (142)
308 COG1076 DjlA DnaJ-domain-conta 93.0 0.056 1.2E-06 50.7 2.1 61 38-98 2-72 (174)
309 cd02958 UAS UAS family; UAS is 92.9 1.1 2.3E-05 38.6 9.9 86 277-362 16-109 (114)
310 TIGR03140 AhpF alkyl hydropero 92.9 0.3 6.4E-06 53.9 7.8 83 152-252 116-198 (515)
311 PRK10329 glutaredoxin-like pro 92.8 0.13 2.8E-06 41.8 3.7 74 157-252 3-76 (81)
312 cd03023 DsbA_Com1_like DsbA fa 92.7 0.12 2.5E-06 46.5 3.7 31 152-182 4-34 (154)
313 KOG0431 Auxilin-like protein a 92.6 0.23 5E-06 53.6 6.2 33 40-72 391-423 (453)
314 cd03066 PDI_b_Calsequestrin_mi 92.5 0.47 1E-05 40.1 7.0 95 139-252 3-100 (102)
315 cd03069 PDI_b_ERp57 PDIb famil 92.5 0.34 7.3E-06 41.2 6.0 92 144-252 9-103 (104)
316 cd03067 PDI_b_PDIR_N PDIb fami 92.4 0.64 1.4E-05 39.0 7.2 91 268-362 12-110 (112)
317 PRK15317 alkyl hydroperoxide r 91.8 4.4 9.6E-05 44.7 15.5 173 153-362 18-196 (517)
318 cd03019 DsbA_DsbA DsbA family, 91.6 0.2 4.4E-06 46.4 4.0 38 152-189 14-51 (178)
319 TIGR02740 TraF-like TraF-like 91.6 0.96 2.1E-05 45.6 9.1 82 279-362 167-262 (271)
320 PF13098 Thioredoxin_2: Thiore 91.5 0.2 4.3E-06 42.7 3.6 41 320-360 72-112 (112)
321 cd03072 PDI_b'_ERp44 PDIb' fam 91.5 0.55 1.2E-05 40.5 6.3 69 293-363 33-107 (111)
322 PF03656 Pam16: Pam16; InterP 91.3 0.37 8E-06 42.6 5.0 53 38-91 59-111 (127)
323 cd03016 PRX_1cys Peroxiredoxin 91.3 0.58 1.2E-05 45.0 6.8 41 155-195 28-69 (203)
324 PF02114 Phosducin: Phosducin; 91.2 0.49 1.1E-05 47.5 6.4 68 293-364 165-238 (265)
325 cd02952 TRP14_like Human TRX-r 91.1 1.1 2.5E-05 39.1 7.9 50 291-340 45-100 (119)
326 TIGR02194 GlrX_NrdH Glutaredox 90.5 0.33 7.1E-06 38.2 3.6 69 158-247 2-70 (72)
327 TIGR03140 AhpF alkyl hydropero 90.4 10 0.00022 41.9 16.5 174 153-362 18-197 (515)
328 cd03073 PDI_b'_ERp72_ERp57 PDI 90.4 0.87 1.9E-05 39.3 6.4 66 294-362 38-109 (111)
329 PRK13191 putative peroxiredoxi 90.3 1.6 3.5E-05 42.4 8.9 44 153-196 33-78 (215)
330 PRK03147 thiol-disulfide oxido 90.2 1.4 3E-05 40.6 8.2 44 320-363 128-171 (173)
331 PRK13189 peroxiredoxin; Provis 90.0 0.9 2E-05 44.3 7.0 41 155-195 38-79 (222)
332 cd03029 GRX_hybridPRX5 Glutare 89.9 0.36 7.8E-06 37.8 3.4 69 157-249 3-71 (72)
333 PF07449 HyaE: Hydrogenase-1 e 89.7 1.4 3E-05 37.8 6.9 69 268-341 19-93 (107)
334 PTZ00137 2-Cys peroxiredoxin; 89.7 0.77 1.7E-05 45.9 6.3 44 153-196 98-143 (261)
335 KOG1731 FAD-dependent sulfhydr 89.2 2.9 6.3E-05 45.6 10.5 175 286-467 69-265 (606)
336 PRK00293 dipZ thiol:disulfide 89.2 1.3 2.9E-05 49.4 8.4 63 299-362 502-568 (571)
337 cd03418 GRX_GRXb_1_3_like Glut 89.0 0.56 1.2E-05 36.8 3.9 56 157-226 2-59 (75)
338 PRK13599 putative peroxiredoxi 88.7 0.83 1.8E-05 44.4 5.6 43 155-197 31-74 (215)
339 TIGR02181 GRX_bact Glutaredoxi 88.6 0.35 7.5E-06 38.6 2.5 55 158-226 2-57 (79)
340 cd03027 GRX_DEP Glutaredoxin ( 88.1 0.78 1.7E-05 36.0 4.1 52 157-220 3-55 (73)
341 smart00594 UAS UAS domain. 87.2 4.1 8.9E-05 35.6 8.7 54 307-360 63-121 (122)
342 KOG0908 Thioredoxin-like prote 87.0 2.9 6.3E-05 41.0 8.0 72 287-363 34-105 (288)
343 TIGR02189 GlrX-like_plant Glut 86.6 0.7 1.5E-05 39.0 3.3 56 157-226 10-69 (99)
344 PRK10638 glutaredoxin 3; Provi 86.1 0.89 1.9E-05 36.8 3.6 53 157-221 4-57 (83)
345 PRK10954 periplasmic protein d 86.1 0.63 1.4E-05 44.8 3.1 41 153-193 37-80 (207)
346 KOG3170 Conserved phosducin-li 86.1 1 2.2E-05 42.6 4.2 102 137-251 92-199 (240)
347 PF13462 Thioredoxin_4: Thiore 85.5 0.68 1.5E-05 42.0 2.9 43 151-193 10-54 (162)
348 cd03013 PRX5_like Peroxiredoxi 85.5 2.6 5.7E-05 38.6 6.8 54 154-207 30-87 (155)
349 PHA03050 glutaredoxin; Provisi 85.3 0.62 1.3E-05 40.1 2.3 59 157-226 15-77 (108)
350 cd03011 TlpA_like_ScsD_MtbDsbE 85.0 5.6 0.00012 34.1 8.4 38 320-358 83-120 (123)
351 PF05768 DUF836: Glutaredoxin- 84.8 0.83 1.8E-05 36.9 2.7 80 157-250 2-81 (81)
352 cd03028 GRX_PICOT_like Glutare 84.4 1.2 2.5E-05 36.8 3.5 50 163-226 21-71 (90)
353 PRK11657 dsbG disulfide isomer 83.6 1.6 3.5E-05 43.4 4.8 27 152-178 116-142 (251)
354 COG0695 GrxC Glutaredoxin and 83.5 1.6 3.5E-05 35.3 3.9 53 157-222 3-59 (80)
355 KOG3171 Conserved phosducin-li 82.5 1.7 3.6E-05 41.5 4.1 84 133-227 135-222 (273)
356 TIGR00412 redox_disulf_2 small 82.4 5.8 0.00013 31.4 6.8 61 290-360 14-75 (76)
357 PRK14018 trifunctional thiored 82.2 5.5 0.00012 43.8 8.5 42 320-361 129-170 (521)
358 TIGR00365 monothiol glutaredox 82.0 2 4.4E-05 36.0 4.1 50 163-226 25-75 (97)
359 PF11009 DUF2847: Protein of u 80.7 0.8 1.7E-05 39.1 1.2 79 143-227 7-89 (105)
360 PF02966 DIM1: Mitosis protein 79.4 2.1 4.6E-05 37.8 3.4 70 147-226 12-84 (133)
361 PTZ00062 glutaredoxin; Provisi 78.9 7.4 0.00016 37.5 7.3 73 280-365 19-95 (204)
362 cd03009 TryX_like_TryX_NRX Try 78.5 6.2 0.00013 34.5 6.3 23 320-342 89-111 (131)
363 PF13728 TraF: F plasmid trans 78.1 12 0.00026 36.3 8.6 65 292-358 138-212 (215)
364 PF11009 DUF2847: Protein of u 77.9 8 0.00017 33.1 6.4 89 265-356 7-104 (105)
365 cd03026 AhpF_NTD_C TRX-GRX-lik 77.0 14 0.00031 30.3 7.6 68 280-355 14-85 (89)
366 KOG0914 Thioredoxin-like prote 76.9 5 0.00011 38.6 5.3 72 269-342 136-217 (265)
367 cd02973 TRX_GRX_like Thioredox 75.5 7.7 0.00017 29.4 5.3 41 293-336 18-58 (67)
368 cd03068 PDI_b_ERp72 PDIb famil 71.8 7.9 0.00017 33.1 5.0 92 144-251 9-106 (107)
369 cd02959 ERp19 Endoplasmic reti 71.6 4.3 9.4E-05 35.2 3.4 65 277-342 18-88 (117)
370 cd02966 TlpA_like_family TlpA- 71.4 18 0.0004 29.6 7.2 23 320-342 87-109 (116)
371 PRK12759 bifunctional gluaredo 71.3 3.9 8.4E-05 43.8 3.6 60 157-222 4-66 (410)
372 COG2143 Thioredoxin-related pr 71.1 9.1 0.0002 35.0 5.3 40 320-359 105-144 (182)
373 PRK10824 glutaredoxin-4; Provi 70.3 4.1 8.9E-05 35.4 2.9 50 163-226 28-78 (115)
374 TIGR02738 TrbB type-F conjugat 69.8 28 0.0006 31.9 8.4 72 289-362 65-151 (153)
375 cd02991 UAS_ETEA UAS family, E 68.7 56 0.0012 28.3 9.7 46 317-362 63-111 (116)
376 cd02964 TryX_like_family Trypa 68.2 14 0.0003 32.4 6.0 22 320-341 89-110 (132)
377 PF13446 RPT: A repeated domai 67.8 8.4 0.00018 29.3 3.8 44 37-88 5-48 (62)
378 cd03010 TlpA_like_DsbE TlpA-li 67.5 16 0.00035 31.5 6.2 37 320-356 90-126 (127)
379 PF11833 DUF3353: Protein of u 64.2 12 0.00026 35.8 4.9 38 46-88 1-38 (194)
380 TIGR02739 TraF type-F conjugat 63.1 33 0.00071 34.3 8.0 69 290-360 166-244 (256)
381 KOG0724 Zuotin and related mol 59.5 8.7 0.00019 39.8 3.4 53 48-100 3-62 (335)
382 PF13905 Thioredoxin_8: Thiore 56.9 55 0.0012 26.4 7.3 60 278-341 34-93 (95)
383 PLN02919 haloacid dehalogenase 56.1 48 0.001 40.1 9.3 85 278-363 420-535 (1057)
384 PF13192 Thioredoxin_3: Thiore 55.7 95 0.0021 24.3 8.2 36 320-361 40-76 (76)
385 COG3019 Predicted metal-bindin 54.9 26 0.00055 31.5 5.0 77 155-252 26-103 (149)
386 KOG1752 Glutaredoxin and relat 54.3 18 0.00038 30.9 3.8 56 157-222 16-73 (104)
387 cd02955 SSP411 TRX domain, SSP 54.0 1.2E+02 0.0025 26.7 9.1 18 325-342 75-92 (124)
388 COG1225 Bcp Peroxiredoxin [Pos 53.6 31 0.00068 31.7 5.6 56 152-207 29-86 (157)
389 PF00837 T4_deiodinase: Iodoth 53.5 39 0.00084 33.2 6.5 55 135-189 81-138 (237)
390 cd02967 mauD Methylamine utili 52.6 39 0.00084 28.3 5.8 56 279-334 22-82 (114)
391 cd03070 PDI_b_ERp44 PDIb famil 50.5 97 0.0021 25.7 7.5 66 280-352 19-85 (91)
392 COG4232 Thiol:disulfide interc 49.0 25 0.00054 38.9 4.8 58 306-363 508-567 (569)
393 KOG3171 Conserved phosducin-li 47.7 51 0.0011 31.8 6.0 81 280-364 162-251 (273)
394 PRK13703 conjugal pilus assemb 46.2 77 0.0017 31.5 7.5 69 290-360 159-237 (248)
395 KOG2603 Oligosaccharyltransfer 45.1 1.6E+02 0.0034 30.3 9.3 94 268-363 50-165 (331)
396 KOG1672 ATP binding protein [P 44.8 31 0.00067 32.8 4.1 61 278-341 85-148 (211)
397 PHA02125 thioredoxin-like prot 44.5 66 0.0014 25.1 5.6 17 319-335 35-51 (75)
398 PF13743 Thioredoxin_5: Thiore 42.6 12 0.00025 35.1 1.0 28 159-186 2-29 (176)
399 PRK13728 conjugal transfer pro 42.0 1.6E+02 0.0034 27.8 8.5 79 282-362 74-169 (181)
400 PF13462 Thioredoxin_4: Thiore 41.6 28 0.00061 31.2 3.4 35 202-251 128-162 (162)
401 PF14687 DUF4460: Domain of un 41.2 45 0.00097 28.9 4.3 44 47-90 4-54 (112)
402 TIGR00385 dsbE periplasmic pro 40.3 45 0.00098 30.8 4.7 44 320-363 127-170 (173)
403 PF07739 TipAS: TipAS antibiot 35.7 77 0.0017 26.9 5.1 53 44-102 51-105 (118)
404 PF09673 TrbC_Ftype: Type-F co 35.3 1.4E+02 0.003 25.8 6.5 45 170-225 36-80 (113)
405 cd03071 PDI_b'_NRX PDIb' famil 35.1 1.9E+02 0.0042 24.8 6.9 70 397-493 16-88 (116)
406 KOG3170 Conserved phosducin-li 34.7 2.6E+02 0.0056 26.9 8.5 91 354-493 79-169 (240)
407 PF12725 DUF3810: Protein of u 33.7 1.3E+02 0.0029 31.0 7.2 67 24-90 69-149 (318)
408 PRK15412 thiol:disulfide inter 33.7 77 0.0017 29.6 5.1 43 320-362 132-174 (185)
409 cd03023 DsbA_Com1_like DsbA fa 33.0 52 0.0011 28.9 3.7 33 202-249 121-153 (154)
410 PF13743 Thioredoxin_5: Thiore 31.9 29 0.00063 32.4 1.9 19 201-225 138-156 (176)
411 KOG3414 Component of the U4/U6 29.6 4E+02 0.0088 23.7 8.4 62 277-341 22-88 (142)
412 cd03012 TlpA_like_DipZ_like Tl 29.5 3.4E+02 0.0075 23.1 8.3 30 320-349 95-124 (126)
413 cd03074 PDI_b'_Calsequestrin_C 29.3 1.7E+02 0.0037 25.2 5.7 48 397-465 22-70 (120)
414 TIGR02742 TrbC_Ftype type-F co 28.2 1.1E+02 0.0024 27.2 4.8 42 320-361 61-112 (130)
415 cd03060 GST_N_Omega_like GST_N 28.2 84 0.0018 24.0 3.7 51 158-221 2-53 (71)
416 PF13417 GST_N_3: Glutathione 27.8 96 0.0021 24.0 4.0 68 160-252 2-70 (75)
417 COG3531 Predicted protein-disu 27.7 65 0.0014 30.7 3.3 42 201-252 165-208 (212)
418 COG5552 Uncharacterized conser 27.4 1.5E+02 0.0033 23.5 4.7 33 36-68 2-34 (88)
419 PF13778 DUF4174: Domain of un 27.2 4.1E+02 0.0089 22.9 9.0 42 321-362 68-110 (118)
420 PRK10877 protein disulfide iso 26.9 94 0.002 30.4 4.6 40 319-363 191-230 (232)
421 TIGR02742 TrbC_Ftype type-F co 23.6 2.4E+02 0.0053 25.0 6.1 45 202-252 63-114 (130)
422 KOG2501 Thioredoxin, nucleored 23.5 1.9E+02 0.0041 26.6 5.5 34 309-342 94-127 (157)
423 COG1651 DsbG Protein-disulfide 23.1 1.5E+02 0.0032 28.8 5.2 38 320-363 205-242 (244)
424 cd00570 GST_N_family Glutathio 22.6 1E+02 0.0022 22.3 3.2 18 159-176 3-20 (71)
425 cd03017 PRX_BCP Peroxiredoxin 22.6 4.1E+02 0.0088 22.8 7.6 40 320-359 90-138 (140)
426 PF09673 TrbC_Ftype: Type-F co 21.8 4.9E+02 0.011 22.3 7.6 20 320-339 61-80 (113)
427 cd03041 GST_N_2GST_N GST_N fam 21.3 3.8E+02 0.0083 20.6 6.4 73 158-252 3-76 (77)
428 cd02977 ArsC_family Arsenate R 21.0 36 0.00079 28.6 0.3 18 158-175 2-19 (105)
429 cd03020 DsbA_DsbC_DsbG DsbA fa 20.2 1.1E+02 0.0024 28.8 3.5 36 320-360 162-197 (197)
430 cd03008 TryX_like_RdCVF Trypar 20.1 4.4E+02 0.0095 23.8 7.2 22 320-341 102-123 (146)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-42 Score=360.48 Aligned_cols=366 Identities=16% Similarity=0.215 Sum_probs=278.1
Q ss_pred cceeEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc---cceeeeeccchhhhhHHHHhCCCCcc
Q 009206 135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQI 211 (540)
Q Consensus 135 ~~~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---~~v~~Vdc~~~~~~~~l~~~~~~~~~ 211 (540)
...|++||.+||+..|..+..+||+|||||||||++++|+|+++|+.|+.. +.+|+|||+++. .+|++|+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~---~~~~~y~---- 96 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES---DLASKYE---- 96 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh---hhHhhhc----
Confidence 346999999999999999999999999999999999999999999999875 389999999775 4999999
Q ss_pred ceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhhcCCcccccccchhhhhhhhhcCCCceEEE-EEeCCCC
Q 009206 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGE 290 (540)
Q Consensus 212 ~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~~lp~~~~i~~~~~~~~fl~~~~~~~~~vv-~f~~~~~ 290 (540)
|+|||||++|++|.. +..|+|+|++++|+.|+.++ .+|+...+...+..+.|+.+.+ +.|| +|.+..
T Consensus 97 --v~gyPTlkiFrnG~~----~~~Y~G~r~adgIv~wl~kq--~gPa~~~l~~~~~a~~~l~~~~---~~vig~F~d~~- 164 (493)
T KOG0190|consen 97 --VRGYPTLKIFRNGRS----AQDYNGPREADGIVKWLKKQ--SGPASKTLKTVDEAEEFLSKKD---VVVIGFFKDLE- 164 (493)
T ss_pred --CCCCCeEEEEecCCc----ceeccCcccHHHHHHHHHhc--cCCCceecccHHHHHhhccCCc---eEEEEEecccc-
Confidence 999999999999974 58999999999999999999 6887777766555788887632 4444 554332
Q ss_pred CCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCC--CCEEEEEeCCCCceeeecCCCChhHHHHHHHhhccCCC
Q 009206 291 RASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQEL 368 (540)
Q Consensus 291 ~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~--~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~~~~~l 368 (540)
.....+...|..+++.+.|++.. ...+++++++.. .+.+++++..+...+.|.|.++.+.|.+||..+++|++
T Consensus 165 ~~~~~~~~~a~~l~~d~~F~~ts-----~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv 239 (493)
T KOG0190|consen 165 SLAESFFDAASKLRDDYKFAHTS-----DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLV 239 (493)
T ss_pred cchHHHHHHHHhccccceeeccC-----cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhccccc
Confidence 22344455666677788887432 246889999853 45699999988888888999999999999999999999
Q ss_pred ccccccchhhhccCCCCCCCCCCCCceeEEEEEecC-CChhhHHHHHHHHHHHHhhccccccccccccCCchHHHHhcc-
Q 009206 369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR- 446 (540)
Q Consensus 369 p~l~~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~- 446 (540)
..+|..+... .+....+ +-++++.+ .....+..++.++++++++++++.=.-. ....+...+..+.
T Consensus 240 ~~ft~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~-d~e~~~~~~~~~Gl 307 (493)
T KOG0190|consen 240 TEFTVANNAK------IYSSFVK-----LGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILI-DPESFARVLEFFGL 307 (493)
T ss_pred ceecccccce------eeccccc-----cceeEEeccccccHHHHHHHHHHHHHhcccceEEEEE-ChHHhhHHHHhcCc
Confidence 9999977533 1111111 22344433 2236788899999999999987661111 0001111111110
Q ss_pred ---CCceEEEE--------------EechhhHHHHHhhccCCcc-ccccCCccCCCC-CCeEEEEEeecCCchh----hh
Q 009206 447 ---NKRLTFAW--------------LDGEAQDRYCSFYLFSETS-FETCGARRDMSD-VPRLFIVRYKRNTTED----EA 503 (540)
Q Consensus 447 ---~~~~~f~w--------------vd~~~q~~f~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~v~~~~~~~~~----~~ 503 (540)
..++.-+- ++.+.-..||..|+.++.. |.++.|+|+.+| .|++++|+-+++.++. ||
T Consensus 308 ~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdV 387 (493)
T KOG0190|consen 308 EEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDV 387 (493)
T ss_pred ccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccce
Confidence 01111111 2223467899999999999 999999999999 9999999999999998 77
Q ss_pred hh----------hc-CC-cccccccccccCCCccceEeeecCC-CCCCC
Q 009206 504 KI----------ER-KP-RNIWDAMQEQEVDPASQLVVRYNGS-DEIPQ 539 (540)
Q Consensus 504 ~~----------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 539 (540)
++ |+ +| |++||+.+.++. +++|||||+| ||||-
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~~~~~---~vviAKmDaTaNd~~~ 433 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKYKDDE---NVVIAKMDATANDVPS 433 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHhcCCC---CcEEEEeccccccCcc
Confidence 77 77 99 999999995543 8999999999 99985
No 2
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=228.73 Aligned_cols=273 Identities=18% Similarity=0.304 Sum_probs=182.7
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc---ceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCC
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA---NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~---~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~ 227 (540)
++...|+|.||||||+||+++.|+|.++.-+|+..+ ++|++||+..+ .++++++ |+|||||++|+++.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~---aiAnefg------iqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFP---AIANEFG------IQGYPTIKFFKGDH 111 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccch---hhHhhhc------cCCCceEEEecCCe
Confidence 467899999999999999999999999999998764 99999999554 4999999 99999999999985
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHhhhcCCcccccccchhhhhhhhhcCCCceEEEEEeCCCCCCcHHHHH---HHHhhc
Q 009206 228 KSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQ---ISRNYW 304 (540)
Q Consensus 228 ~~~~~~~~y~G~~~~~~i~~fi~~~v~~lp~~~~i~~~~~~~~fl~~~~~~~~~vv~f~~~~~~~~~~~~~---~A~~~~ 304 (540)
...|.|+|+.++|++|+.+- ..|-+..+.... ..|..-...+.+.+|+|+.. ..|.+.. +|.+
T Consensus 112 -----a~dYRG~R~Kd~iieFAhR~--a~aiI~pi~enQ--~~fehlq~Rhq~ffVf~Gtg---e~PL~d~fidAASe-- 177 (468)
T KOG4277|consen 112 -----AIDYRGGREKDAIIEFAHRC--AAAIIEPINENQ--IEFEHLQARHQPFFVFFGTG---EGPLFDAFIDAASE-- 177 (468)
T ss_pred -----eeecCCCccHHHHHHHHHhc--ccceeeecChhH--HHHHHHhhccCceEEEEeCC---CCcHHHHHHHHhhh--
Confidence 48999999999999999875 233333333211 12222222456888888732 2344433 3432
Q ss_pred cCceEEEEEeeccccHHHHHHcC-CCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhhccCCCccccccchhhhccCC
Q 009206 305 AYASFAFVLWREEESSIWWNTFE-VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDA 383 (540)
Q Consensus 305 ~~~~f~~v~~~~~~~~~l~~~f~-V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~ 383 (540)
...++..... +++++-.++ .+.-|++.+||+..- .+.++| +.++|.+||+..++|-+-..++....+.+-
T Consensus 178 -~~~~a~FfSa---seeVaPe~~~~kempaV~VFKDetf-~i~de~--dd~dLseWinRERf~~fLa~dgflL~EiG~-- 248 (468)
T KOG4277|consen 178 -KFSVARFFSA---SEEVAPEENDAKEMPAVAVFKDETF-EIEDEG--DDEDLSEWINRERFPGFLAADGFLLAEIGA-- 248 (468)
T ss_pred -heeeeeeecc---ccccCCcccchhhccceEEEcccee-EEEecC--chhHHHHHHhHhhccchhhcccchHHHhCc--
Confidence 3333333321 122322222 234799999997431 222344 567899999999988877777777766443
Q ss_pred CCCCCCCCCCceeEEEEEecCC------ChhhHHHHHHHHHHHHhhccccccccccccCCchHHHHhccCCceEEEEEec
Q 009206 384 RGYSRAGSDTTIWYCVILAGRL------SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDG 457 (540)
Q Consensus 384 ~~~~~~~k~~~~~lcvi~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~f~wvd~ 457 (540)
+|| |.++++.+. +.+..++.....++++.|+.+-+ + ..++.|+|+||
T Consensus 249 -----sGK-----LVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pd----------------f-h~dFQF~hlDG 301 (468)
T KOG4277|consen 249 -----SGK-----LVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPD----------------F-HNDFQFAHLDG 301 (468)
T ss_pred -----CCc-----eEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChh----------------h-hhhceeeccch
Confidence 444 777766543 23344555555555655553210 1 25689999999
Q ss_pred hhhHHHHHhhccCCccccccCCccCCCCCCeEEEEEeecC
Q 009206 458 EAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRN 497 (540)
Q Consensus 458 ~~q~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 497 (540)
.++.+.+++...+ .|.+|+..++-.
T Consensus 302 ---nD~~nqilM~als------------~P~l~i~Ntsnq 326 (468)
T KOG4277|consen 302 ---NDLANQILMAALS------------EPHLFIFNTSNQ 326 (468)
T ss_pred ---hHHHHHHHHHhhc------------CCeEEEEecCch
Confidence 6788888766654 477777765544
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=99.95 E-value=1.5e-26 Score=251.03 Aligned_cols=352 Identities=16% Similarity=0.178 Sum_probs=242.5
Q ss_pred eeEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhc---ccceeeeeccchhhhhHHHHhCCCCccce
Q 009206 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF 213 (540)
Q Consensus 137 ~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (540)
.|..|+..+|+..+.+++++||.||||||+||+++.|.|+++|+.++. .+.++.|||+++.. +|++++
T Consensus 33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~---l~~~~~------ 103 (477)
T PTZ00102 33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME---LAQEFG------ 103 (477)
T ss_pred CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH---HHHhcC------
Confidence 468899999999998889999999999999999999999999998864 35899999997665 999999
Q ss_pred eeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhhcCCcccccccchhhhhhhhhcCCCceEEE-EEeCCCCCC
Q 009206 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGERA 292 (540)
Q Consensus 214 V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~~lp~~~~i~~~~~~~~fl~~~~~~~~~vv-~f~~~~~~~ 292 (540)
|++|||+++|.+|.. ..|.|.++.+.|++|+.+. ..|....+++......+... ..+.++ .+.+..+..
T Consensus 104 i~~~Pt~~~~~~g~~-----~~y~g~~~~~~l~~~l~~~--~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 173 (477)
T PTZ00102 104 VRGYPTIKFFNKGNP-----VNYSGGRTADGIVSWIKKL--TGPAVTEVESASEIKLIAKK---IFVAFYGEYTSKDSEL 173 (477)
T ss_pred CCcccEEEEEECCce-----EEecCCCCHHHHHHHHHHh--hCCCceeecCHHHHHHhhcc---CcEEEEEEeccCCcHH
Confidence 999999999999864 4899999999999999998 34555555544333433322 224344 344333323
Q ss_pred cHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhhccCCCcccc
Q 009206 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLR 372 (540)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~~~~~lp~l~ 372 (540)
...+..+|..+++...|..+. +. ..+.+++++..+.....|.| .+.++|.+||..+.+|++.+++
T Consensus 174 ~~~f~~~a~~~~~~~~F~~~~--~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~ 238 (477)
T PTZ00102 174 YKKFEEVADKHREHAKFFVKK--HE------------GKNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEIN 238 (477)
T ss_pred HHHHHHHHHhccccceEEEEc--CC------------CCCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecC
Confidence 344566888887776665432 11 24678888866554444444 5889999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCceeEEEEEecCCChhhHHHHHHHHHHHHhhcccccccccccc------------CCchH
Q 009206 373 SVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTD------------QSLAP 440 (540)
Q Consensus 373 ~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------~~~~~ 440 (540)
..++....- .+ ..++++....++.+.+.+.++++|+.+++++.=...+.+ ...+.
T Consensus 239 ~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~ 305 (477)
T PTZ00102 239 AENYRRYIS-------SG------KDLVWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPG 305 (477)
T ss_pred ccchHHHhc-------CC------ccEEEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcccCce
Confidence 998754211 11 222333333445667888999999988866441000110 11222
Q ss_pred HHHhccCCceEE-----EEEechhhHHHHHhhccCCcc-ccccCCccCCCCCCeEEEEEeecCCchh----hhhh-----
Q 009206 441 AAVAFRNKRLTF-----AWLDGEAQDRYCSFYLFSETS-FETCGARRDMSDVPRLFIVRYKRNTTED----EAKI----- 505 (540)
Q Consensus 441 ~A~~~~~~~~~f-----~wvd~~~q~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~----- 505 (540)
++......+..+ .+++.+.-.+|++.+..++.. +.++.|.+..++.++..+++-+.+..+. +++|
T Consensus 306 ~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~ 385 (477)
T PTZ00102 306 LAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAP 385 (477)
T ss_pred EEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECC
Confidence 221111111111 234556667888888888877 7778888888888999999888887764 4555
Q ss_pred -----hc-CC-cccccccccccCCCccceEeeecCC-CCCC
Q 009206 506 -----ER-KP-RNIWDAMQEQEVDPASQLVVRYNGS-DEIP 538 (540)
Q Consensus 506 -----~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 538 (540)
++ .| |+.++..... ...+.++++|++ |+++
T Consensus 386 wC~~C~~~~p~~~~~a~~~~~---~~~v~~~~id~~~~~~~ 423 (477)
T PTZ00102 386 WCGHCKNLEPVYNELGEKYKD---NDSIIVAKMNGTANETP 423 (477)
T ss_pred CCHHHHHHHHHHHHHHHHhcc---CCcEEEEEEECCCCccc
Confidence 55 77 7777554422 236889999998 7654
No 4
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.95 E-value=2.7e-26 Score=247.49 Aligned_cols=366 Identities=12% Similarity=0.177 Sum_probs=247.7
Q ss_pred eeEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc---cceeeeeccchhhhhHHHHhCCCCccce
Q 009206 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFF 213 (540)
Q Consensus 137 ~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---~~v~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (540)
.|.+||.++|++++.++++++|.||||||++|+++.|.|.++|+.+++. +.+++|||++++. +|++++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~---l~~~~~------ 72 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD---LAQKYG------ 72 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH---HHHhCC------
Confidence 3688999999999988999999999999999999999999999999764 5899999997755 899999
Q ss_pred eeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhhcCCcccccccchhhhhhhhhcCCCceEEEEE-eCCCCCC
Q 009206 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFF-SKTGERA 292 (540)
Q Consensus 214 V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~~lp~~~~i~~~~~~~~fl~~~~~~~~~vv~f-~~~~~~~ 292 (540)
|.++||+++|++|.. ....|.|.++.++|.+|+.+.+ .|....+++.+.++.|+... .+.+|+| .+..+..
T Consensus 73 i~~~Pt~~~~~~g~~---~~~~~~g~~~~~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~~---~~~vi~~~~~~~~~~ 144 (462)
T TIGR01130 73 VSGYPTLKIFRNGED---SVSDYNGPRDADGIVKYMKKQS--GPAVKEIETVADLEAFLADD---DVVVIGFFKDLDSEL 144 (462)
T ss_pred CccccEEEEEeCCcc---ceeEecCCCCHHHHHHHHHHhc--CCCceeecCHHHHHHHHhcC---CcEEEEEECCCCcHH
Confidence 999999999998863 1368999999999999999883 34444455445477888753 3445544 4333334
Q ss_pred cHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCce--eeecCCC--ChhHHHHHHHhhccCCC
Q 009206 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSF--NNSRLSEVMEQNKLQEL 368 (540)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~--~~y~G~~--~~~~l~~fi~~~~~~~l 368 (540)
...+..+|..+++...+ ++... ...+.+++++. .+++++|+..+... ..|.|.. +.+.|.+||..+.+|++
T Consensus 145 ~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v 219 (462)
T TIGR01130 145 NDTFLSVAEKLRDVYFF-FAHSS---DVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLV 219 (462)
T ss_pred HHHHHHHHHHhhhccce-EEecC---CHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCce
Confidence 45666788877665542 22221 23577788764 46666666544333 3577776 44799999999999999
Q ss_pred ccccccchhhhccCCCCCCCCCCCCceeEEEEEec-CCC-hhhHHHHHHHHHHHHhhcc-ccc----cccc--------c
Q 009206 369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLS-PELNKMRETIRRVQETLLS-DDE----SNAA--------D 433 (540)
Q Consensus 369 p~l~~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~-~~~-~~~~~~~~~l~~~~~~~~~-~~~----~~~~--------~ 433 (540)
++++..+... .+.. . .++++++. ..+ ...+.+.+.++.+++.+++ .+. +... +
T Consensus 220 ~~~~~~~~~~-~~~~-----~------~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~ 287 (462)
T TIGR01130 220 GEFTQETAAK-YFES-----G------PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFG 287 (462)
T ss_pred EeeCCcchhh-HhCC-----C------CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcC
Confidence 9998887543 2211 0 13344332 222 2247788889999988874 221 1000 0
Q ss_pred cc-CCchHHHHhccCC--ceEEE--EEechhhHHHHHhhccCCcc-ccccCCccCCCCCCeEEEEEeecCCchh----hh
Q 009206 434 TD-QSLAPAAVAFRNK--RLTFA--WLDGEAQDRYCSFYLFSETS-FETCGARRDMSDVPRLFIVRYKRNTTED----EA 503 (540)
Q Consensus 434 ~~-~~~~~~A~~~~~~--~~~f~--wvd~~~q~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~ 503 (540)
.. ...+.++.....+ ...+. +++.+.-.+|++.++.++.. +.++++.++.++.++..+++-+.+..+. ++
T Consensus 288 ~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~v 367 (462)
T TIGR01130 288 LKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDV 367 (462)
T ss_pred CCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeE
Confidence 10 0111111111111 11111 34445668888888888877 7778888777788888899888877664 45
Q ss_pred hh----------hc-CC-cccccccccccCCCccceEeeecCC-CCCC
Q 009206 504 KI----------ER-KP-RNIWDAMQEQEVDPASQLVVRYNGS-DEIP 538 (540)
Q Consensus 504 ~~----------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 538 (540)
+| +. .| |+.++...... ...+.+|++|.+ |+++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~--~~~i~~~~id~~~n~~~ 413 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDA--ESDVVIAKMDATANDVP 413 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcC--CCcEEEEEEECCCCccC
Confidence 55 55 77 88876666331 136789999988 8876
No 5
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.8e-25 Score=219.56 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=103.3
Q ss_pred CccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhhhhhh---
Q 009206 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHIL--- 108 (540)
Q Consensus 35 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~--- 108 (540)
..+|||++|||+++|+..|||+||||||++||||+||+ ++++|++|+.||+||+||++|+.||.+|++++.+..
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~ 93 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDG 93 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccccc
Confidence 37899999999999999999999999999999999985 577899999999999999999999999999877531
Q ss_pred hhhccccCCccccccCCCCCCCCCCCcceeEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhc
Q 009206 109 EKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG 184 (540)
Q Consensus 109 ~~~~~~~~~~~f~~~~f~~~~~~~~~~~~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~ 184 (540)
+..+..++.|+++..+||+..++.. +... .....|++.++.-.|.||-...+.|....+-...
T Consensus 94 ~~g~~~~~~f~~~f~dfg~~~~g~~-------~~e~------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~ 156 (336)
T KOG0713|consen 94 EGGGGGNDIFSAFFGDFGVTVGGNP-------LEEA------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYK 156 (336)
T ss_pred ccCCcccchHHHhhcccccccCCCc-------ccCC------CCCCceEEeehhhchhhhhcccHHHHHhccCcee
Confidence 1122225666655555644332200 1111 3455677777778899998888888777654433
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.87 E-value=1.7e-22 Score=175.50 Aligned_cols=107 Identities=8% Similarity=0.022 Sum_probs=94.4
Q ss_pred CCCCCCCCCcceeEEeCCCCcccc---ccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHH
Q 009206 126 PLLDATDHSVHAFNVVTSEDFPSI---FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHL 202 (540)
Q Consensus 126 ~~~~~~~~~~~~V~~lt~~~F~~~---v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l 202 (540)
|+|++. +.|++|+++||++. +++++++||.||||||+||+.+.|.|+++|+.+++.+.+++|||+++.. +
T Consensus 3 ~~~~~~----~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~---l 75 (113)
T cd03006 3 PFFSQR----SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG---K 75 (113)
T ss_pred CccCCC----CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH---H
Confidence 455544 36899999999987 4789999999999999999999999999999999888999999997665 7
Q ss_pred H-HhCCCCccceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 203 A-ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 203 ~-~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
| ++++ |++||||++|++|.. ...|.|.++.+.|+.|+
T Consensus 76 ~~~~~~------I~~~PTl~lf~~g~~----~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 76 CRKQKH------FFYFPVIHLYYRSRG----PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HHHhcC------CcccCEEEEEECCcc----ceEEeCCCCHHHHHhhC
Confidence 8 5788 999999999998864 57899999999999984
No 7
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.86 E-value=8.7e-21 Score=183.68 Aligned_cols=285 Identities=15% Similarity=0.204 Sum_probs=183.3
Q ss_pred eCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhc-----ccceeeeeccchhhhhHHHHhCCCCccceee
Q 009206 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-----IANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (540)
Q Consensus 141 lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~-----~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~ 215 (540)
+|.+|++..+++++.+||.|||+||+.++.+.|+|+++|..++. .+..|+|||+ ....++.+|. |+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd---~e~~ia~ky~------I~ 71 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD---KEDDIADKYH------IN 71 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc---hhhHHhhhhc------cc
Confidence 46789999999999999999999999999999999999998864 3478999999 4445999988 99
Q ss_pred eeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhhcCCcccccccchhhhhhhhhcC-CCceEEEEEeCCCCCCcH
Q 009206 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTG-PHKVKVIFFSKTGERASP 294 (540)
Q Consensus 216 ~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~~lp~~~~i~~~~~~~~fl~~~~-~~~~~vv~f~~~~~~~~~ 294 (540)
.|||+++|++|.. -..+|.|.|++++|.+||.+++. -|-..+.+ ++++-.-.. ....++.+|.+++.....
T Consensus 72 KyPTlKvfrnG~~---~~rEYRg~RsVeaL~efi~kq~s-~~i~Ef~s----l~~l~n~~~p~K~~vIgyF~~kdspey~ 143 (375)
T KOG0912|consen 72 KYPTLKVFRNGEM---MKREYRGQRSVEALIEFIEKQLS-DPINEFES----LDQLQNLDIPSKRTVIGYFPSKDSPEYD 143 (375)
T ss_pred cCceeeeeeccch---hhhhhccchhHHHHHHHHHHHhc-cHHHHHHh----HHHHHhhhccccceEEEEeccCCCchHH
Confidence 9999999999964 23589999999999999999843 22111111 222222222 223444455544333334
Q ss_pred HHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCcee-eecCCC-ChhHHHHHHHhhccCCCcccc
Q 009206 295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSF-NNSRLSEVMEQNKLQELPQLR 372 (540)
Q Consensus 295 ~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~-~y~G~~-~~~~l~~fi~~~~~~~lp~l~ 372 (540)
.++.+|.-+++.+.|..- ..+. .....-.+.+ +++|.+....+. .|.|.+ +...+..||..--.|++-++|
T Consensus 144 ~~~kva~~lr~dc~f~V~-~gD~-----~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiT 216 (375)
T KOG0912|consen 144 NLRKVASLLRDDCVFLVG-FGDL-----LKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREIT 216 (375)
T ss_pred HHHHHHHHHhhccEEEee-cccc-----ccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhh
Confidence 557788888887765432 2221 1111111122 556654433332 689987 568899999999999999999
Q ss_pred ccchhh---hccCCCCCCCCCCCCceeEEEEEecCCChhhHHHHHHHHHHHHhhccccccccccccCCchHHHHhccCCc
Q 009206 373 SVTSME---LGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKR 449 (540)
Q Consensus 373 ~~~~~~---~~c~~~~~~~~~k~~~~~lcvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 449 (540)
=+|.-+ +|.| + +|++-..+ +.+.....-..+++.|-. ....
T Consensus 217 FeN~EELtEEGlP--------------f-lILf~~kd-D~~s~k~F~~aI~ReL~~--------------------e~~~ 260 (375)
T KOG0912|consen 217 FENAEELTEEGLP--------------F-LILFRKKD-DKESEKIFKNAIARELDD--------------------ETLA 260 (375)
T ss_pred hccHHHHhhcCCc--------------e-EEEEecCC-cccHHHHHHHHHHHHhhh--------------------hhhc
Confidence 888544 3332 3 45554321 222222223333442221 0122
Q ss_pred eEEEEEechhhHHHHHhhccCCccccccCCccCCCCCCeEEEEEeecC
Q 009206 450 LTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRN 497 (540)
Q Consensus 450 ~~f~wvd~~~q~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 497 (540)
+.|..-||..-+.=+.-+- -.++|.|+|.|=.|+|-
T Consensus 261 in~l~ADG~~f~hpL~Hlg------------Ks~~DLPviaIDsF~Hm 296 (375)
T KOG0912|consen 261 INFLTADGKVFKHPLRHLG------------KSPDDLPVIAIDSFRHM 296 (375)
T ss_pred cceeecCcceecchHHHhC------------CCcccCcEEEeecccee
Confidence 6677777754333222221 15788999999888874
No 8
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.6e-20 Score=194.00 Aligned_cols=210 Identities=17% Similarity=0.331 Sum_probs=157.3
Q ss_pred EEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeee
Q 009206 139 NVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (540)
Q Consensus 139 ~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~ 217 (540)
..++..+|...+ ..+.+|+|+||+|||+||+.+.|+|+++++.|++.+.+|.|||++++. +|++++ |+||
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~---~~~~y~------i~gf 102 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD---LCEKYG------IQGF 102 (383)
T ss_pred hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH---HHHhcC------CccC
Confidence 445555665555 789999999999999999999999999999999988999999997776 999999 9999
Q ss_pred eEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhhcCCcc------cccccchhhhhhhhhcCCCceEEEEEeC---C
Q 009206 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRI------FYYTKESMGKNFLAKTGPHKVKVIFFSK---T 288 (540)
Q Consensus 218 Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~~lp~~------~~i~~~~~~~~fl~~~~~~~~~vv~f~~---~ 288 (540)
|||++|.+|.. +..|.|.++.+.+.+|+.+.+...... ..++..+ .+.+.... ...+.|.||.+ +
T Consensus 103 Ptl~~f~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~~-~~~~lv~f~aPwc~~ 176 (383)
T KOG0191|consen 103 PTLKVFRPGKK----PIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDN-FDETVKDS-DADWLVEFYAPWCGH 176 (383)
T ss_pred cEEEEEcCCCc----eeeccCcccHHHHHHHHHHhhccccccccCCceEEccccc-hhhhhhcc-CcceEEEEeccccHH
Confidence 99999999932 689999999999999998874322211 1122222 22222222 23466666643 4
Q ss_pred CCCCcHHHHHHHHhhc--cCceEEEEEeeccc-cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhhcc
Q 009206 289 GERASPFVRQISRNYW--AYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL 365 (540)
Q Consensus 289 ~~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~-~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~~~ 365 (540)
+....|.+..++..+. ..+.++.+ +++ ...++++++|..+|++++|++++.....|.|..+.+.|..|+....-
T Consensus 177 ck~l~~~~~~~a~~~~~~~~v~~~~~---d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKLLKSKENVELGKI---DATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred hhhcChHHHHHHHHhccCcceEEEee---ccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcC
Confidence 5666788888888764 33444444 343 36799999999999999999876623446888899999999988655
Q ss_pred C
Q 009206 366 Q 366 (540)
Q Consensus 366 ~ 366 (540)
+
T Consensus 254 ~ 254 (383)
T KOG0191|consen 254 R 254 (383)
T ss_pred C
Confidence 4
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.83 E-value=4.7e-21 Score=163.53 Aligned_cols=100 Identities=23% Similarity=0.532 Sum_probs=91.4
Q ss_pred eeEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeee
Q 009206 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (540)
Q Consensus 137 ~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~ 216 (540)
.|.+||.++|+..+.++++|+|.||||||++|+++.|.|+++|+.+++.+.+++|||++++. +|++++ |++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~ 72 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM---LCRSQG------VNS 72 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH---HHHHcC------CCc
Confidence 36889999999999878999999999999999999999999999999888999999997665 899998 999
Q ss_pred eeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 217 ~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
+||+++|++|.. ...|.|.++.++|++|+
T Consensus 73 ~Pt~~~~~~g~~----~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 73 YPSLYVFPSGMN----PEKYYGDRSKESLVKFA 101 (101)
T ss_pred cCEEEEEcCCCC----cccCCCCCCHHHHHhhC
Confidence 999999999864 57899999999999884
No 10
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.6e-21 Score=194.29 Aligned_cols=70 Identities=30% Similarity=0.517 Sum_probs=66.1
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||+||+||++|+.||+||..+..
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 579999999999999999999999999999999998 3678999999999999999999999999998864
No 11
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.81 E-value=2.3e-20 Score=161.62 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=87.2
Q ss_pred eEEeCCCCccccccCCCcEEEEEEe--cCCC---CccCChHHHHHHHHHHhcccceeeeeccchh--hhhHHHHhCCCCc
Q 009206 138 FNVVTSEDFPSIFHDSKPWLIQVYS--DGSY---LCGQFSGAWKTIAALLEGIANTGMVELGDIR--LATHLAERKPIGQ 210 (540)
Q Consensus 138 V~~lt~~~F~~~v~~~~~~lV~FYa--pwC~---~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~--~~~~l~~~~~~~~ 210 (540)
+++||..||+++|.+++.+||+||| |||+ ||++|+|+|.+++.. +.||+|||++.. ....||++|+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~--- 75 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYK--- 75 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhC---
Confidence 6889999999999999999999999 9999 999999999888764 579999995211 1235999999
Q ss_pred cceee--eeeEEEEeCCCCCCCCCcccccCC-CCHHHHHHHHHHh
Q 009206 211 IFFRR--GLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATA 252 (540)
Q Consensus 211 ~~~V~--~~Ptl~~f~~g~~~~~~~~~y~G~-~~~~~i~~fi~~~ 252 (540)
|+ +||||++|++|.. ..+..|.|. |+.++|++|+.++
T Consensus 76 ---I~~~gyPTl~lF~~g~~--~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 ---LDKESYPVIYLFHGGDF--ENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred ---CCcCCCCEEEEEeCCCc--CCCccCCCCcccHHHHHHHHHhc
Confidence 98 9999999999842 125789996 9999999999875
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.80 E-value=6.6e-20 Score=157.14 Aligned_cols=101 Identities=21% Similarity=0.446 Sum_probs=90.0
Q ss_pred eeEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceee
Q 009206 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (540)
Q Consensus 137 ~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~ 215 (540)
.|.+||.++|++.+ +++++|+|.|||+||++|+++.|.|+++++.+.+...+++|||++++. +|++++ |+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~------i~ 72 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES---LCQQAN------IR 72 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH---HHHHcC------CC
Confidence 46789999999987 667899999999999999999999999999998878999999997665 899998 99
Q ss_pred eeeEEEEeCCCCCCCCCcccccCCCC-HHHHHHHH
Q 009206 216 GLPSLVAFPPGCKSSDCMTRFEGELS-VDAVTDWF 249 (540)
Q Consensus 216 ~~Ptl~~f~~g~~~~~~~~~y~G~~~-~~~i~~fi 249 (540)
++||+++|.+|.. ....|.|.++ .++|.+|+
T Consensus 73 ~~Pt~~~~~~g~~---~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 73 AYPTIRLYPGNAS---KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cccEEEEEcCCCC---CceEccCCCCCHHHHHhhC
Confidence 9999999999832 2678999997 99999885
No 13
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.79 E-value=1e-19 Score=157.26 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=90.0
Q ss_pred eeEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhc------ccceeeeeccchhhhhHHHHhCCCCc
Q 009206 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG------IANTGMVELGDIRLATHLAERKPIGQ 210 (540)
Q Consensus 137 ~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~------~~~v~~Vdc~~~~~~~~l~~~~~~~~ 210 (540)
.|.+|+.++|++.++++++++|.||||||++|+++.|.|+++|+.+++ ...+++|||++++. +|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~---l~~~~~--- 75 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD---IADRYR--- 75 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH---HHHhCC---
Confidence 578999999999998889999999999999999999999999998753 35789999997654 899999
Q ss_pred cceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 211 ~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
|+++||+++|++|.. ....|.|.++.++|++|+
T Consensus 76 ---v~~~Ptl~~~~~g~~---~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 ---INKYPTLKLFRNGMM---MKREYRGQRSVEALAEFV 108 (108)
T ss_pred ---CCcCCEEEEEeCCcC---cceecCCCCCHHHHHhhC
Confidence 999999999999863 247899999999999985
No 14
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.9e-19 Score=180.68 Aligned_cols=72 Identities=33% Similarity=0.540 Sum_probs=68.4
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChhhhhhhhhccchhhhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHI 107 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~ 107 (540)
.+.+|++|||+++||.+|||+|||+|+++|||||||++.++|++|.+||++|+||++|+.||+||+++...+
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g 74 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG 74 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc
Confidence 468999999999999999999999999999999999999999999999999999999999999999987543
No 15
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=4.1e-19 Score=151.11 Aligned_cols=102 Identities=17% Similarity=0.370 Sum_probs=93.8
Q ss_pred eEEeCCCCccccccC-CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeee
Q 009206 138 FNVVTSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (540)
Q Consensus 138 V~~lt~~~F~~~v~~-~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~ 216 (540)
|..+|.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++. +|++++ |++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~------v~~ 71 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE---LCKKYG------VKS 71 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH---HHHHTT------CSS
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch---hhhccC------CCC
Confidence 578999999999965 9999999999999999999999999999999877999999997755 999999 999
Q ss_pred eeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 217 ~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+||+++|.+|.. ...|.|.++.+.|.+|+.++
T Consensus 72 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 72 VPTIIFFKNGKE----VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SSEEEEEETTEE----EEEEESSSSHHHHHHHHHHH
T ss_pred CCEEEEEECCcE----EEEEECCCCHHHHHHHHHcC
Confidence 999999999975 56899999999999999874
No 16
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.75 E-value=1.4e-18 Score=148.16 Aligned_cols=98 Identities=17% Similarity=0.380 Sum_probs=86.5
Q ss_pred eeEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCCCCccceee
Q 009206 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (540)
Q Consensus 137 ~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~ 215 (540)
.|.+||.++|++++++. |+|.||||||++|+++.|.|+++++.+++. +.+++|||++++. +|++++ |+
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~------i~ 70 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG---LSGRFF------VT 70 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh---HHHHcC------Cc
Confidence 47899999999888543 899999999999999999999999988754 5899999997665 889998 99
Q ss_pred eeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHH
Q 009206 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (540)
Q Consensus 216 ~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~ 250 (540)
++||+++|++|. ...|.|.++.++|.+|+.
T Consensus 71 ~~Pt~~~~~~g~-----~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 71 ALPTIYHAKDGV-----FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred ccCEEEEeCCCC-----EEEecCCCCHHHHHHHHh
Confidence 999999999885 367999999999999985
No 17
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.75 E-value=1.9e-18 Score=149.22 Aligned_cols=105 Identities=20% Similarity=0.391 Sum_probs=90.2
Q ss_pred eEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeee
Q 009206 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (540)
Q Consensus 138 V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~ 216 (540)
|.+|+.++|++.+ +++++++|.||||||++|+++.|.|+++|+.+.+...++.|||+++. ...+|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~------i~~ 74 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYG------VQG 74 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcC------CCc
Confidence 6789999999998 56788999999999999999999999999999887899999999622 224899998 999
Q ss_pred eeEEEEeCCCCCC-CCCcccccCCCCHHHHHHHH
Q 009206 217 LPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 217 ~Ptl~~f~~g~~~-~~~~~~y~G~~~~~~i~~fi 249 (540)
+||+++|.+|... ......|.|.++.++|++|+
T Consensus 75 ~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 75 FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9999999998610 01357899999999999997
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.74 E-value=5.5e-18 Score=148.43 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=87.1
Q ss_pred eeEEeCCCCccccc-cCCCcEEEEEEecCCC--Ccc--CChHHHHHHHHHH--hcccceeeeeccchhhhhHHHHhCCCC
Q 009206 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSY--LCG--QFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIG 209 (540)
Q Consensus 137 ~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~--~C~--~l~p~~~~~A~~l--~~~~~v~~Vdc~~~~~~~~l~~~~~~~ 209 (540)
.|.+||++||++.| ++..++++.|+++||+ ||+ .++|...++|.++ ++.++|++|||++++. ||++++
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~---La~~~~-- 84 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK---VAKKLG-- 84 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH---HHHHcC--
Confidence 68999999999999 5556777777777886 499 7888888888777 6667999999997765 999999
Q ss_pred ccceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 210 ~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|+++|||++|++|.. ..|.|.++.+.|++|+.+.
T Consensus 85 ----I~~iPTl~lfk~G~~-----v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 85 ----LDEEDSIYVFKDDEV-----IEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred ----CccccEEEEEECCEE-----EEeeCCCCHHHHHHHHHHH
Confidence 999999999999964 4599999999999999865
No 19
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.72 E-value=4.7e-18 Score=147.22 Aligned_cols=101 Identities=15% Similarity=0.328 Sum_probs=87.0
Q ss_pred eeEEeCCCCccccc---cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeeccc-hhhhhHHHHh-CCCCc
Q 009206 137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD-IRLATHLAER-KPIGQ 210 (540)
Q Consensus 137 ~V~~lt~~~F~~~v---~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~-~~~~~~l~~~-~~~~~ 210 (540)
.|.+++.++|+.++ +++++|||.||+|||++|+++.|.|+++++.+++. ..+++|||+. +.. +|.+ ++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~--- 75 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQ--- 75 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcC---
Confidence 47889999999988 36789999999999999999999999999999875 5899999996 333 6764 77
Q ss_pred cceeeeeeEEEEeCCCCCCCCCcccccCC-CCHHHHHHHH
Q 009206 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (540)
Q Consensus 211 ~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~-~~~~~i~~fi 249 (540)
|+++||+++|.+|.. ....|.|. |+.++|+.|+
T Consensus 76 ---v~~~Pti~~f~~~~~---~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 76 ---LKSFPTILFFPKNSR---QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred ---CCcCCEEEEEcCCCC---CceeccCCCCCHHHHHhhC
Confidence 999999999998754 25789995 9999999985
No 20
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.72 E-value=1.2e-17 Score=142.53 Aligned_cols=100 Identities=23% Similarity=0.434 Sum_probs=89.7
Q ss_pred eEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeee
Q 009206 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (540)
Q Consensus 138 V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~ 216 (540)
|.+++.++|++.+ +.+.+++|.||+|||++|+++.|.|.++++.+.+...++.+||+++.. +|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~------i~~ 72 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS---LAQQYG------VRG 72 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH---HHHHCC------CCc
Confidence 6789999999988 556679999999999999999999999999998888999999997665 889998 999
Q ss_pred eeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 217 ~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
+||+++|.+|.. ....|.|.++.++|++|+
T Consensus 73 ~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 73 FPTIKVFGAGKN---SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred cCEEEEECCCCc---ceeecCCCCCHHHHHHHh
Confidence 999999998832 357899999999999997
No 21
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.6e-17 Score=172.42 Aligned_cols=223 Identities=14% Similarity=0.202 Sum_probs=142.3
Q ss_pred ceeEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc---cceeeeeccchhhhhHHHHhCCCCcc
Q 009206 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQI 211 (540)
Q Consensus 136 ~~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---~~v~~Vdc~~~~~~~~l~~~~~~~~~ 211 (540)
..|++|+.++|+..| .+.+.+||+||++|||||++++|.|+++|+.+++. +.|++|||.+..+.. ||++++
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~-lCRef~---- 113 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVK-LCREFS---- 113 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhh-hHhhcC----
Confidence 368999999999998 66779999999999999999999999999999864 599999999776554 999999
Q ss_pred ceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhh---------cCCcccccccchhhhhhhhhc--CCCce
Q 009206 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL---------KLPRIFYYTKESMGKNFLAKT--GPHKV 280 (540)
Q Consensus 212 ~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~---------~lp~~~~i~~~~~~~~fl~~~--~~~~~ 280 (540)
|.+||||++|+++.........+.|.....+|.+.+.+.+. +.|....+++.+.+....+.. ..+.+
T Consensus 114 --V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yv 191 (606)
T KOG1731|consen 114 --VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYV 191 (606)
T ss_pred --CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhccccccccee
Confidence 99999999999875422223556777778888888766432 344333343322222222211 12334
Q ss_pred EEEEEeCCCCCCcHHHHHHHHhhc--cCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh----h
Q 009206 281 KVIFFSKTGERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN----S 354 (540)
Q Consensus 281 ~vv~f~~~~~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~----~ 354 (540)
.++|.... ...-...+..+- ..+....+. +.....+.+ +++...|..++|+.+...++.-.+. +. +
T Consensus 192 -Aiv~e~~~---s~lg~~~~l~~l~~~~v~vr~~~--d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~-s~~~y~~ 263 (606)
T KOG1731|consen 192 -AIVFETEP---SDLGWANLLNDLPSKQVGVRARL--DTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSS-SRSAYVK 263 (606)
T ss_pred -EEEEecCC---cccHHHHHHhhccCCCcceEEEe--cchhccccc-cCCCCchhhhhhcCCcccccccccc-cHHHHHH
Confidence 44554221 222232222221 223333332 222233455 7777899999999877766433322 33 4
Q ss_pred HHHHHHHhh---ccCCCccccc
Q 009206 355 RLSEVMEQN---KLQELPQLRS 373 (540)
Q Consensus 355 ~l~~fi~~~---~~~~lp~l~~ 373 (540)
.|.+++... ..|.++..+.
T Consensus 264 ~I~~~lg~~~~a~~pt~~p~~~ 285 (606)
T KOG1731|consen 264 KIDDLLGDKNEASGPTLHPITA 285 (606)
T ss_pred HHHHHhcCccccCCCCcCcccc
Confidence 566666443 3455555543
No 22
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.71 E-value=1.1e-15 Score=151.55 Aligned_cols=279 Identities=16% Similarity=0.195 Sum_probs=177.0
Q ss_pred CCCCCCCCCCCcceeEEeCCCCccccccCCCcEEEEEEecCCCCccCChH-------HHHHHHHHHhccc-ceeeeeccc
Q 009206 124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG-------AWKTIAALLEGIA-NTGMVELGD 195 (540)
Q Consensus 124 ~f~~~~~~~~~~~~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p-------~~~~~A~~l~~~~-~v~~Vdc~~ 195 (540)
.||-|++. ..|..||..||.++++..+...|.||.|--++ +.... ..+-+|+.|...+ ++|.||...
T Consensus 26 efP~YDGk----DRVi~LneKNfk~~lKkyd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K 100 (383)
T PF01216_consen 26 EFPEYDGK----DRVIDLNEKNFKRALKKYDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK 100 (383)
T ss_dssp SSSS-SSS------CEEE-TTTHHHHHHH-SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT
T ss_pred CCccCCCc----cceEEcchhHHHHHHHhhcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH
Confidence 46667666 25899999999999999999999999987433 32222 2333456666555 999999995
Q ss_pred hhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhhcCCcccccccchhhhhhhhhc
Q 009206 196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT 275 (540)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~~lp~~~~i~~~~~~~~fl~~~ 275 (540)
+.. |++++| +...++|.+|+.|.. .+|.|.++++.|+.|+...+. -| +.+|++...+..|..-.
T Consensus 101 d~k---lAKKLg------v~E~~SiyVfkd~~~-----IEydG~~saDtLVeFl~dl~e-dP-VeiIn~~~e~~~Fe~ie 164 (383)
T PF01216_consen 101 DAK---LAKKLG------VEEEGSIYVFKDGEV-----IEYDGERSADTLVEFLLDLLE-DP-VEIINNKHELKAFERIE 164 (383)
T ss_dssp THH---HHHHHT--------STTEEEEEETTEE-----EEE-S--SHHHHHHHHHHHHS-SS-EEEE-SHHHHHHHHH--
T ss_pred HHH---HHHhcC------ccccCcEEEEECCcE-----EEecCccCHHHHHHHHHHhcc-cc-hhhhcChhhhhhhhhcc
Confidence 544 999999 989999999999974 899999999999999999843 33 55566555455565532
Q ss_pred CCCceEEEEEeCCCCC-CcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCC-CCh
Q 009206 276 GPHKVKVIFFSKTGER-ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNN 353 (540)
Q Consensus 276 ~~~~~~vv~f~~~~~~-~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~-~~~ 353 (540)
..++||.|....+. ....+..+|..|..++.|..+. .+.++++++++ ...|-+|.++...|+...|+ .+.
T Consensus 165 --d~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e 236 (383)
T PF01216_consen 165 --DDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE 236 (383)
T ss_dssp --SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H
T ss_pred --cceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCCCCH
Confidence 24778865433221 1223455888999999887764 35699999996 77889999999999998776 467
Q ss_pred hHHHHHHHhhccCCCccccccchhhhccCCCCCCCCCCCCceeEEEEEecC-CChhhHHHHHHHHHHHHhhccccccccc
Q 009206 354 SRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAA 432 (540)
Q Consensus 354 ~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (540)
.+|.+||++|+-|++-.|+..+.++.=-+. .....+++|.. .+++-.++.+.|+++|+
T Consensus 237 ~e~~~fi~~h~rptlrkl~~~~m~e~Wedd----------~~g~hIvaFaee~dpdG~efleilk~va~----------- 295 (383)
T PF01216_consen 237 EELVEFIEEHKRPTLRKLRPEDMFETWEDD----------IDGIHIVAFAEEEDPDGFEFLEILKQVAR----------- 295 (383)
T ss_dssp HHHHHHHHHT-S-SEEE--GGGHHHHHHSS----------SSSEEEEEE--TTSHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHhchhHhhhCChhhhhhhhccc----------CCCceEEEEecCCCCchHHHHHHHHHHHH-----------
Confidence 889999999999999999999977622211 01244555654 45555566677777777
Q ss_pred cccCCchHHHHhccC-CceEEEEEechhhHHH
Q 009206 433 DTDQSLAPAAVAFRN-KRLTFAWLDGEAQDRY 463 (540)
Q Consensus 433 ~~~~~~~~~A~~~~~-~~~~f~wvd~~~q~~f 463 (540)
.+.. ..++++|||-+.-+=.
T Consensus 296 -----------~nt~np~LsivwIDPD~fPll 316 (383)
T PF01216_consen 296 -----------DNTDNPDLSIVWIDPDDFPLL 316 (383)
T ss_dssp -----------HCTT-TT--EEEE-GGG-HHH
T ss_pred -----------hcCcCCceeEEEECCCCCchh
Confidence 2222 3699999998654433
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.71 E-value=1e-17 Score=142.55 Aligned_cols=98 Identities=17% Similarity=0.403 Sum_probs=86.8
Q ss_pred eEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhc---ccceeeeeccchhhhhHHHHhCCCCcccee
Q 009206 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (540)
Q Consensus 138 V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V 214 (540)
|.+||.++|+..+.++ +++|.|||+||++|+.+.|.|+++++.+++ ...+++|||+.+.. +|++++ |
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~------v 71 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE---LCSEFQ------V 71 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh---hHhhcC------C
Confidence 5789999999999655 599999999999999999999999999987 46899999996664 889988 9
Q ss_pred eeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 215 ~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
.++||+++|++|.. ...|.|.++.++|.+|+
T Consensus 72 ~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 72 RGYPTLLLFKDGEK----VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CcCCEEEEEeCCCe----eeEeeCCCCHHHHHhhC
Confidence 99999999998864 46799999999999885
No 24
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.2e-17 Score=174.44 Aligned_cols=69 Identities=28% Similarity=0.423 Sum_probs=64.2
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||+||||+++||.+|||+|||+||++||||+|++ +.++|++|++||++|+||++|+.||+||+.+.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 4699999999999999999999999999999999873 46789999999999999999999999998754
No 25
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.70 E-value=2.5e-17 Score=140.52 Aligned_cols=100 Identities=18% Similarity=0.385 Sum_probs=87.1
Q ss_pred eEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc--cceeeeeccchhhhhHHHHhCCCCcccee
Q 009206 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (540)
Q Consensus 138 V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~--~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V 214 (540)
|.+||.++|++.+ +++++++|.||+|||++|+++.|.|+++++.+++. ..+++|||+.+. ++..++ +
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~------~ 71 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND----VPSEFV------V 71 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh----hhhhcc------C
Confidence 6789999999988 55689999999999999999999999999999873 589999999652 667777 8
Q ss_pred eeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 215 ~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
.++||+++|++|.+ .....|.|.++.++|++|+
T Consensus 72 ~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDK--SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCc--CCceEccCCcCHHHHHhhC
Confidence 99999999999862 1357899999999999985
No 26
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.70 E-value=1.6e-17 Score=144.39 Aligned_cols=100 Identities=22% Similarity=0.362 Sum_probs=86.3
Q ss_pred EEeCCCCccccc-c--CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCCCCcccee
Q 009206 139 NVVTSEDFPSIF-H--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (540)
Q Consensus 139 ~~lt~~~F~~~v-~--~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V 214 (540)
..+|.++|.+.+ . .+++|+|.||||||++|+.+.|.|+++++.+.+. ..+++|||+.++. +|++++ |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~---l~~~~~------V 77 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR---LARKLG------A 77 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH---HHHHcC------C
Confidence 457788887654 2 6799999999999999999999999999999864 6899999996654 899998 9
Q ss_pred eeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 009206 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (540)
Q Consensus 215 ~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~ 251 (540)
+++||+++|++|.. ...+.|.++.+.|+.|+.+
T Consensus 78 ~~~Pt~~i~~~g~~----~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 78 HSVPAIVGIINGQV----TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ccCCEEEEEECCEE----EEEecCCCCHHHHHHHHhc
Confidence 99999999998854 4566899999999999865
No 27
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.70 E-value=1.2e-17 Score=161.81 Aligned_cols=104 Identities=21% Similarity=0.432 Sum_probs=91.9
Q ss_pred ceeEEeCCCCcccccc-----CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCc
Q 009206 136 HAFNVVTSEDFPSIFH-----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQ 210 (540)
Q Consensus 136 ~~V~~lt~~~F~~~v~-----~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~ 210 (540)
+.|.+||.+||++.+. .+++|+|+||||||++|+++.|.|+++|+.+++...+++|||++++. +|++++
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~---l~~~~~--- 103 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN---LAKRFA--- 103 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH---HHHHcC---
Confidence 4689999999999883 25899999999999999999999999999999888999999997664 899998
Q ss_pred cceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 211 ~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|+++||+++|.+|.. ...+.|.++.++|.+|+.+.
T Consensus 104 ---I~~~PTl~~f~~G~~----v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 104 ---IKGYPTLLLFDKGKM----YQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred ---CCcCCEEEEEECCEE----EEeeCCCCCHHHHHHHHHHH
Confidence 999999999998854 33446889999999999876
No 28
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.4e-17 Score=146.55 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=94.7
Q ss_pred eeEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceee
Q 009206 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (540)
Q Consensus 137 ~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~ 215 (540)
.+..++..+|++.| +++.|++|.|||+|||+|+.+.|..++++.++.|..++++||.+++.. |+.+|+ |.
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e---la~~Y~------I~ 114 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE---LAEDYE------IS 114 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc---hHhhcc------ee
Confidence 45778889998887 899999999999999999999999999999999999999999997766 999999 99
Q ss_pred eeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 216 ~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
.+||+++|++|.+ ...+-|..+.+.|.+|+.+.
T Consensus 115 avPtvlvfknGe~----~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 115 AVPTVLVFKNGEK----VDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred eeeEEEEEECCEE----eeeecccCCHHHHHHHHHHH
Confidence 9999999999975 46788999999999999887
No 29
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.1e-17 Score=174.00 Aligned_cols=104 Identities=15% Similarity=0.337 Sum_probs=91.3
Q ss_pred ceeEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc--ceeeeeccchhhhhHHHHhCCCCccc
Q 009206 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA--NTGMVELGDIRLATHLAERKPIGQIF 212 (540)
Q Consensus 136 ~~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~--~v~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (540)
..|..|..+||++++ +.++-+||+|||||||||++++|+|+++|+.+++.. .||++|.+.|.. ....
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-----~~~~----- 435 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-----PSLK----- 435 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-----cccc-----
Confidence 459999999999998 889999999999999999999999999999999863 799999996643 1223
Q ss_pred eeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|.+||||++|+.|.+ ..+..|+|+|+.+++..|+.+.
T Consensus 436 -~~~fPTI~~~pag~k--~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 436 -VDGFPTILFFPAGHK--SNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred -ccccceEEEecCCCC--CCCcccCCCcchHHHHhhhccC
Confidence 889999999999975 4578999999999999999776
No 30
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.2e-17 Score=172.48 Aligned_cols=69 Identities=20% Similarity=0.418 Sum_probs=64.4
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 369999999999999999999999999999999986 467899999999999999999999999998754
No 31
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.67 E-value=6.5e-17 Score=137.84 Aligned_cols=84 Identities=13% Similarity=0.267 Sum_probs=74.8
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeecc-chhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCC
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKS 229 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~-~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~ 229 (540)
..+++++|.||||||++|+++.|.|+++++.+.+ ..+++||++ +++. ++++++ |+++||+++|.+| .
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~---l~~~~~------V~~~PT~~lf~~g-~- 83 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPS---LLSRYG------VVGFPTILLFNST-P- 83 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHH---HHHhcC------CeecCEEEEEcCC-c-
Confidence 4689999999999999999999999999999975 568889987 5554 889998 9999999999988 4
Q ss_pred CCCcccccCCCCHHHHHHHH
Q 009206 230 SDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 230 ~~~~~~y~G~~~~~~i~~fi 249 (540)
..+|.|.++.++|++|+
T Consensus 84 ---~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 ---RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ---eeEecCCCCHHHHHhhC
Confidence 57899999999999985
No 32
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.66 E-value=6.6e-17 Score=170.68 Aligned_cols=69 Identities=28% Similarity=0.467 Sum_probs=64.7
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..|||++|||+++||.+|||+|||+||++||||+|+ +.++|++|++||++|+||.+|+.||+||..+..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 579999999999999999999999999999999985 579999999999999999999999999987643
No 33
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.66 E-value=1.4e-16 Score=134.35 Aligned_cols=93 Identities=14% Similarity=0.257 Sum_probs=81.7
Q ss_pred CCccccc-cC-CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEE
Q 009206 144 EDFPSIF-HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (540)
Q Consensus 144 ~~F~~~v-~~-~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~ 221 (540)
++|++.| ++ +++++|.||+|||++|+++.|.|+++++.+.+...+++|||+.++. +|++++ |.++||++
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---l~~~~~------i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ---IAQQFG------VQALPTVY 71 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH---HHHHcC------CCCCCEEE
Confidence 3677777 34 6899999999999999999999999999998777899999996655 899998 99999999
Q ss_pred EeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 222 AFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 222 ~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
+|.+|.. ...|.|.++.+.|.+|+
T Consensus 72 ~~~~g~~----~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 72 LFAAGQP----VDGFQGAQPEEQLRQML 95 (96)
T ss_pred EEeCCEE----eeeecCCCCHHHHHHHh
Confidence 9998854 45789999999999986
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.66 E-value=1.3e-16 Score=136.13 Aligned_cols=101 Identities=21% Similarity=0.347 Sum_probs=88.0
Q ss_pred eEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHh--cccceeeeeccchhhhhHHHHhCCCCccceee
Q 009206 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (540)
Q Consensus 138 V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~--~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~ 215 (540)
|.+|+..+|+..+.++++++|.||++||++|+++.|.++++++.+. +...++.+||++. ....+|++++ |+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~------i~ 74 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYN------VK 74 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCC------Cc
Confidence 6789999999999888899999999999999999999999999997 4458999999962 1234889998 99
Q ss_pred eeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 216 ~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
++||+++|++|.. ...|.|..+.+.+++|+
T Consensus 75 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 75 GFPTFKYFENGKF----VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cccEEEEEeCCCe----eEEeCCCCCHHHHHhhC
Confidence 9999999999864 46889999999999885
No 35
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.65 E-value=2.2e-16 Score=134.09 Aligned_cols=99 Identities=23% Similarity=0.389 Sum_probs=89.1
Q ss_pred eCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhc--ccceeeeeccchhhhhHHHHhCCCCccceeeeee
Q 009206 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (540)
Q Consensus 141 lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~--~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~P 218 (540)
|+.++|+..+.++++++|.||++||++|+++.|.|++++..+++ ...++.+||++++. +|++++ |+++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~------i~~~P 71 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD---LASRFG------VSGFP 71 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH---HHHhCC------CCcCC
Confidence 57788999888899999999999999999999999999999987 46899999997665 889998 99999
Q ss_pred EEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 219 tl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
++++|.+|.. ...|.|.++.+.|..|+.+.
T Consensus 72 ~~~~~~~~~~----~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 72 TIKFFPKGKK----PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EEEEecCCCc----ceeecCCCCHHHHHHHHHhc
Confidence 9999999863 57899999999999999864
No 36
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.2e-16 Score=167.06 Aligned_cols=70 Identities=31% Similarity=0.507 Sum_probs=64.6
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..|||++|||+++||.+|||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN 75 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence 3699999999999999999999999999999999863 467899999999999999999999999987643
No 37
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.8e-16 Score=155.28 Aligned_cols=103 Identities=17% Similarity=0.289 Sum_probs=95.4
Q ss_pred eeEEeCCCCccccc--cC-CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccce
Q 009206 137 AFNVVTSEDFPSIF--HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (540)
Q Consensus 137 ~V~~lt~~~F~~~v--~~-~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (540)
.|.++|..||...| .+ ..|+||.||+|||++|+++.|..++++.+.+|...+++|||++++. ++..+|
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~---vAaqfg------ 94 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM---VAAQFG------ 94 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh---HHHHhC------
Confidence 47899999999987 44 4599999999999999999999999999999999999999997776 899999
Q ss_pred eeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 214 V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|+++||+++|.+|+. ...|.|....+.|..|+.+.
T Consensus 95 iqsIPtV~af~dGqp----VdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 95 VQSIPTVYAFKDGQP----VDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred cCcCCeEEEeeCCcC----ccccCCCCcHHHHHHHHHHh
Confidence 999999999999975 67899999999999999988
No 38
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.3e-16 Score=167.98 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=62.8
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccch
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGID 102 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 102 (540)
..|||++|||+++|+.+|||+|||+||++||||+|++ +.++|++|++||++|+||++|+.||+||+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 4699999999999999999999999999999999874 467899999999999999999999999864
No 39
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.8e-16 Score=165.72 Aligned_cols=70 Identities=30% Similarity=0.560 Sum_probs=64.6
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..|||++|||+++||.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~ 74 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPN 74 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccc
Confidence 469999999999999999999999999999999986 3567899999999999999999999999987643
No 40
>PRK09381 trxA thioredoxin; Provisional
Probab=99.64 E-value=4.6e-16 Score=134.51 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=91.3
Q ss_pred eeEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceee
Q 009206 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (540)
Q Consensus 137 ~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~ 215 (540)
.|.+++.++|.+.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+...++.|||+.++. ++++++ |+
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~ 74 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYG------IR 74 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh---HHHhCC------CC
Confidence 57889999999765 678899999999999999999999999999998878999999996665 888888 99
Q ss_pred eeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 216 ~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
++||+++|++|.. ...+.|..+.+.|..|+...
T Consensus 75 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 75 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred cCCEEEEEeCCeE----EEEecCCCCHHHHHHHHHHh
Confidence 9999999998864 35678999999999999876
No 41
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.63 E-value=4.8e-16 Score=132.67 Aligned_cols=100 Identities=20% Similarity=0.376 Sum_probs=86.9
Q ss_pred eEEeCCCCcccccc-CCCcEEEEEEecCCCCccCChHHHHHHHHHHh--cccceeeeeccc-hhhhhHHHHhCCCCccce
Q 009206 138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGD-IRLATHLAERKPIGQIFF 213 (540)
Q Consensus 138 V~~lt~~~F~~~v~-~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~--~~~~v~~Vdc~~-~~~~~~l~~~~~~~~~~~ 213 (540)
|.+||.++|+..+. ++++++|.||++||++|+++.|.|+++++.++ +...++.+||.. +.. +|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~------ 72 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD---LAKKYG------ 72 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh---hHHhCC------
Confidence 57889999999884 56699999999999999999999999999997 345899999996 544 899998
Q ss_pred eeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 214 V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
|.++||+++|.+|.. ....|.|.++.++|.+|+
T Consensus 73 i~~~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 73 VSGFPTLKFFPKGST---EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCCcCEEEEEeCCCC---CccccCCccCHHHHHhhC
Confidence 999999999998743 257789999999999985
No 42
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.63 E-value=5.5e-16 Score=135.37 Aligned_cols=103 Identities=24% Similarity=0.403 Sum_probs=84.6
Q ss_pred eeEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhc---ccceeeeeccchhhhhHHHHhCCCCccc
Q 009206 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF 212 (540)
Q Consensus 137 ~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~~~v~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (540)
.|.+|+.++|++.+ +++++|+|.||+|||++|+.+.|.|+++++.+++ .+.+++|||+.+.. ..+|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~----- 75 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN-VALCRDFG----- 75 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh-HHHHHhCC-----
Confidence 36889999999998 4567999999999999999999999999999864 35889999974322 34889998
Q ss_pred eeeeeeEEEEeCCCCCCCCCcccccCC-CCHHHHH
Q 009206 213 FRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVT 246 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g~~~~~~~~~y~G~-~~~~~i~ 246 (540)
|+++||+++|++|.........|.|. |.++.+.
T Consensus 76 -i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 76 -VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred -CCCCCEEEEECCCCccCCCCCcccCCccCHHHHH
Confidence 99999999999987644445678877 7666664
No 43
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.8e-16 Score=143.24 Aligned_cols=95 Identities=22% Similarity=0.343 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCC-CCccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHH
Q 009206 9 KVKAYWAPLILFGLGLFYQ-LVVLPR-SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYA 83 (540)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~A 83 (540)
..|.+.+-++|+++++|.+ +..+.. ...-|||+||||++++|.+|||+|||+|++++||||++ ++++.|..|++|
T Consensus 69 ~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KA 148 (230)
T KOG0721|consen 69 TKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKA 148 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHH
Confidence 3445555555555554432 222221 12569999999999999999999999999999999985 467789999999
Q ss_pred HHHcCChhhhhhhhhccchh
Q 009206 84 YELLTDPLWKRNYDVYGIDE 103 (540)
Q Consensus 84 y~~L~d~~~r~~yd~~g~~~ 103 (540)
|+.|+|+..|+.|..||...
T Consensus 149 Y~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 149 YQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHHhcchhhHHHHHHhCCCC
Confidence 99999999999999999765
No 44
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3e-16 Score=164.15 Aligned_cols=69 Identities=29% Similarity=0.583 Sum_probs=63.8
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~----~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+++||.+|||+|||+|+++||||+|++ +.++|++|++||++|+||.+|+.||+||..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 4699999999999999999999999999999999874 35789999999999999999999999998754
No 45
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3e-16 Score=164.76 Aligned_cols=70 Identities=31% Similarity=0.529 Sum_probs=64.9
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..|||++|||+++||.+|||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||+||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 369999999999999999999999999999999986 4678999999999999999999999999987643
No 46
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=2.9e-16 Score=164.38 Aligned_cols=70 Identities=29% Similarity=0.481 Sum_probs=64.6
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||+||.++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID 75 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence 469999999999999999999999999999999986 4568899999999999999999999999987643
No 47
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3e-16 Score=150.84 Aligned_cols=72 Identities=29% Similarity=0.475 Sum_probs=66.0
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhhhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHI 107 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~ 107 (540)
..|+|+||||+++|+.++|||+||+|+++||||+++. ..++|++||+||++|+||.+|..||.||+.+..-.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~ 104 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLA 104 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHH
Confidence 4579999999999999999999999999999999874 57899999999999999999999999999876543
No 48
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.62 E-value=4.1e-16 Score=165.36 Aligned_cols=105 Identities=11% Similarity=0.288 Sum_probs=90.0
Q ss_pred eeEEeCCCCcccccc---CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCCCCccc
Q 009206 137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF 212 (540)
Q Consensus 137 ~V~~lt~~~F~~~v~---~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (540)
.|.+||.+||+++|. .+++|||.||||||++|+.+.|.|+++|+++++. +.|++|||+.+... .++++++
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~-~~~~~~~----- 425 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKE-FAKQELQ----- 425 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccH-HHHHHcC-----
Confidence 589999999999984 7899999999999999999999999999999875 58999999965321 1346788
Q ss_pred eeeeeeEEEEeCCCCCCCCCccccc-CCCCHHHHHHHHHH
Q 009206 213 FRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFAT 251 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g~~~~~~~~~y~-G~~~~~~i~~fi~~ 251 (540)
|++||||++|++|.. .+..|. |.|++++|+.|++.
T Consensus 426 -I~~~PTii~Fk~g~~---~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 -LGSFPTILFFPKHSS---RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred -CCccceEEEEECCCC---CceeCCCCCCCHHHHHHHHHh
Confidence 999999999999853 257897 58999999999864
No 49
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.2e-17 Score=164.55 Aligned_cols=69 Identities=26% Similarity=0.423 Sum_probs=63.7
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~----~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
...||++|||.+.|+..+||++||+||++||||+||. +.++|+.|+.||+|||||+.|++||.+.++-+
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 5689999999999999999999999999999999884 56789999999999999999999999887544
No 50
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.9e-16 Score=163.83 Aligned_cols=69 Identities=25% Similarity=0.467 Sum_probs=64.6
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+++||.+|||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 467899999999999999999999999998764
No 51
>PHA02278 thioredoxin-like protein
Probab=99.62 E-value=3.7e-16 Score=133.62 Aligned_cols=96 Identities=9% Similarity=0.118 Sum_probs=80.7
Q ss_pred CCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh-hhHHHHhCCCCccceeeeeeEEE
Q 009206 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (540)
Q Consensus 143 ~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~-~~~l~~~~~~~~~~~V~~~Ptl~ 221 (540)
.++|...+.++++++|.|||||||+|+.++|.++++++++.+...+.+||++.++. ...++++++ |+++||++
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~------I~~iPT~i 77 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD------IMSTPVLI 77 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC------CccccEEE
Confidence 35677788889999999999999999999999999998876656899999996521 123889988 99999999
Q ss_pred EeCCCCCCCCCcccccCCCCHHHHHHH
Q 009206 222 AFPPGCKSSDCMTRFEGELSVDAVTDW 248 (540)
Q Consensus 222 ~f~~g~~~~~~~~~y~G~~~~~~i~~f 248 (540)
+|++|.. ..+..|..+.+.|.++
T Consensus 78 ~fk~G~~----v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQL----VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEE----EEEEeCCCCHHHHHhh
Confidence 9999965 5677898888888776
No 52
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.62 E-value=4.8e-16 Score=121.23 Aligned_cols=60 Identities=35% Similarity=0.697 Sum_probs=57.2
Q ss_pred ccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCcH----HHHHHHHHHHHHcCChhhhhhhh
Q 009206 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRNYD 97 (540)
Q Consensus 38 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~----~~f~~i~~Ay~~L~d~~~r~~yd 97 (540)
|||++|||+++++.++||++|+++++++|||++++.. +.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987655 78999999999999999999998
No 53
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.62 E-value=1.3e-14 Score=141.06 Aligned_cols=188 Identities=11% Similarity=0.092 Sum_probs=124.7
Q ss_pred CCcEEEEEEe---cCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCC
Q 009206 153 SKPWLIQVYS---DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (540)
Q Consensus 153 ~~~~lV~FYa---pwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~ 228 (540)
+...++.|++ +||++|+.+.|.+++++..+.+. ..+..||.++++. ++++++ |.++||+++|.+|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~---l~~~~~------V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKE---EAEKYG------VERVPTTIILEEGKD 89 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHH---HHHHcC------CCccCEEEEEeCCee
Confidence 3445677998 99999999999999999988533 2455555555554 899999 999999999999864
Q ss_pred CCCCcccccCCCCHHHHHHHHHHhhhcCCcccccccchhhhhhhhhcCCCceEEEEE-eCC---CCCCcHHHHHHHHhhc
Q 009206 229 SSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYW 304 (540)
Q Consensus 229 ~~~~~~~y~G~~~~~~i~~fi~~~v~~lp~~~~i~~~~~~~~fl~~~~~~~~~vv~f-~~~---~~~~~~~~~~~A~~~~ 304 (540)
...+|.|..+.+.+.+|+...+.--+....++... .+.+.. . +..+.|+.| .+. |+...+.+..++..+
T Consensus 90 ---~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~-~~~l~~-~-~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~- 162 (215)
T TIGR02187 90 ---GGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKT-VELLQS-L-DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN- 162 (215)
T ss_pred ---eEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHh-c-CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-
Confidence 12478899999999999987632111222232221 222222 1 122445544 332 333345555566543
Q ss_pred cCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 009206 305 AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 305 ~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~ 362 (540)
..+.+..++.. ..++++.+|+|.+.||+++++++. .+.|..+.++|.+||..
T Consensus 163 ~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 DKILGEMIEAN--ENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred CceEEEEEeCC--CCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 34555555432 347899999999999999986532 27788788899998864
No 54
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=4.1e-16 Score=162.71 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=63.6
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
.|||++|||+++||.+|||+|||+|+++||||+|++ +.++|++|++||++|+||.+|+.||+||..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 699999999999999999999999999999999874 45789999999999999999999999998764
No 55
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=5e-16 Score=157.41 Aligned_cols=69 Identities=29% Similarity=0.527 Sum_probs=64.1
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+++||.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||.++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~ 73 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAA 73 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccc
Confidence 369999999999999999999999999999999986 467899999999999999999999999998753
No 56
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=5.5e-16 Score=162.51 Aligned_cols=69 Identities=29% Similarity=0.497 Sum_probs=64.5
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
.|||++|||+++|+.++||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||+++..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 69999999999999999999999999999999986 4678999999999999999999999999987643
No 57
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=6.2e-16 Score=162.10 Aligned_cols=67 Identities=28% Similarity=0.410 Sum_probs=62.8
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHHHcCChhhhhhhhhccchh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 103 (540)
.|||++|||+++||.++||+|||+||++||||+|+. +.++|++|++||++|+||.+|+.||+||.+.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~ 71 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPL 71 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCcc
Confidence 599999999999999999999999999999999874 4678999999999999999999999999753
No 58
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=6.1e-16 Score=162.48 Aligned_cols=69 Identities=26% Similarity=0.516 Sum_probs=64.4
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+++|+.++||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||+||..+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 457899999999999999999999999998754
No 59
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.61 E-value=1.8e-15 Score=129.81 Aligned_cols=94 Identities=16% Similarity=0.383 Sum_probs=80.0
Q ss_pred CCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc---cceeeeeccchhhhhHHHHhCCCCccceeeeeeEE
Q 009206 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (540)
Q Consensus 144 ~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl 220 (540)
++|++. .++++++|.||++||++|+++.|.|+++++.+++. ..++.+||++.+. +|++++ |+++||+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~------I~~~Pt~ 76 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS---IASEFG------VRGYPTI 76 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh---HHhhcC------CccccEE
Confidence 677764 45779999999999999999999999999998642 5789999996654 889988 9999999
Q ss_pred EEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 221 ~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
++|.+|. ...|.|.++.+.|.+|+.+.
T Consensus 77 ~l~~~~~-----~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 77 KLLKGDL-----AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEEcCCC-----ceeecCCCCHHHHHHHHHhh
Confidence 9997663 35689999999999998763
No 60
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=6.6e-16 Score=161.45 Aligned_cols=69 Identities=29% Similarity=0.487 Sum_probs=64.3
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+++|+.+|||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||+++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 4699999999999999999999999999999999874 45789999999999999999999999998764
No 61
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=6.6e-16 Score=162.46 Aligned_cols=70 Identities=27% Similarity=0.509 Sum_probs=64.4
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..|||++|||+++||.+|||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 3699999999999999999999999999999999873 457899999999999999999999999987643
No 62
>PLN02309 5'-adenylylsulfate reductase
Probab=99.60 E-value=1.2e-15 Score=161.84 Aligned_cols=104 Identities=14% Similarity=0.387 Sum_probs=90.4
Q ss_pred eeEEeCCCCccccc---cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeecc-chhhhhHHHH-hCCCCc
Q 009206 137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-DIRLATHLAE-RKPIGQ 210 (540)
Q Consensus 137 ~V~~lt~~~F~~~v---~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~-~~~~~~~l~~-~~~~~~ 210 (540)
.|..|+.+||++++ +.+++|||.||||||++|+++.|.|+++|+.+.+. +.|++|||+ ++.. +|. +++
T Consensus 346 ~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~--- 419 (457)
T PLN02309 346 NVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQ--- 419 (457)
T ss_pred CcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCC---
Confidence 58999999999987 47899999999999999999999999999999876 599999999 5544 675 577
Q ss_pred cceeeeeeEEEEeCCCCCCCCCcccccC-CCCHHHHHHHHHHh
Q 009206 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATA 252 (540)
Q Consensus 211 ~~~V~~~Ptl~~f~~g~~~~~~~~~y~G-~~~~~~i~~fi~~~ 252 (540)
|++||||++|++|.. .+..|.| .|++++|+.|+.+.
T Consensus 420 ---I~~~PTil~f~~g~~---~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 ---LGSFPTILLFPKNSS---RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ---CceeeEEEEEeCCCC---CeeecCCCCcCHHHHHHHHHHh
Confidence 999999999998864 3578985 79999999999763
No 63
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.60 E-value=8.3e-16 Score=129.35 Aligned_cols=98 Identities=22% Similarity=0.427 Sum_probs=86.2
Q ss_pred EeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHH--hcccceeeeeccchhhhhHHHHhCCCCccceeeee
Q 009206 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (540)
Q Consensus 140 ~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l--~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~ 217 (540)
+||.++|.+.+.+.++++|.||++||++|+++.|.|+++++.+ .+...++.|||+++.. +|++++ |+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~------i~~~ 72 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND---LCSEYG------VRGY 72 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH---HHHhCC------CCCC
Confidence 4778899999977779999999999999999999999999999 4667999999997554 899998 9999
Q ss_pred eEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 218 Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
||+++|.++.. ....|.|.++++.|.+|+
T Consensus 73 Pt~~~~~~~~~---~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 73 PTIKLFPNGSK---EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CEEEEEcCCCc---ccccCCCCcCHHHHHhhC
Confidence 99999998832 268899999999999884
No 64
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=7.5e-16 Score=161.20 Aligned_cols=69 Identities=25% Similarity=0.450 Sum_probs=64.0
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+++||.++||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||.++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 4699999999999999999999999999999999874 35689999999999999999999999998764
No 65
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=8.1e-16 Score=161.58 Aligned_cols=68 Identities=28% Similarity=0.548 Sum_probs=63.8
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
.|||++|||+++|+.++||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 699999999999999999999999999999999874 45789999999999999999999999998764
No 66
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1e-15 Score=161.23 Aligned_cols=68 Identities=31% Similarity=0.539 Sum_probs=63.3
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
.|||++|||+++||.+|||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||+++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 389999999999999999999999999999999874 46789999999999999999999999998753
No 67
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.4e-15 Score=160.48 Aligned_cols=69 Identities=25% Similarity=0.476 Sum_probs=64.1
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
.|||++|||+++|+.++||+|||+|+++||||++++ +.++|++|++||++|+||.+|+.||+||..+..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 599999999999999999999999999999999874 467899999999999999999999999987643
No 68
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.4e-15 Score=159.83 Aligned_cols=69 Identities=23% Similarity=0.463 Sum_probs=63.7
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhh----ccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDV----YGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~----~g~~~~ 104 (540)
..|||++|||+++||.+|||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+ ||+.+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 4699999999999999999999999999999999873 46789999999999999999999999 987654
No 69
>PRK10996 thioredoxin 2; Provisional
Probab=99.57 E-value=2.1e-15 Score=136.46 Aligned_cols=103 Identities=20% Similarity=0.334 Sum_probs=92.5
Q ss_pred eeEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeee
Q 009206 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (540)
Q Consensus 137 ~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~ 216 (540)
.+..++..+|+..++++++++|.||++||++|+++.|.++++++.+.+...+++||+++++. ++++++ |.+
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~---l~~~~~------V~~ 106 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE---LSARFR------IRS 106 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH---HHHhcC------CCc
Confidence 35778999999988889999999999999999999999999999998878999999997665 889998 999
Q ss_pred eeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 217 ~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+||+++|++|+. ...+.|..+.+.|.+|+.+.
T Consensus 107 ~Ptlii~~~G~~----v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 107 IPTIMIFKNGQV----VDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred cCEEEEEECCEE----EEEEcCCCCHHHHHHHHHHh
Confidence 999999998864 56778999999999999864
No 70
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.2e-15 Score=157.99 Aligned_cols=69 Identities=30% Similarity=0.554 Sum_probs=63.9
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+++||.++||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||..+.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 4699999999999999999999999999999999874 45789999999999999999999999998764
No 71
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.56 E-value=4e-15 Score=127.52 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=78.7
Q ss_pred CCCcccccc--CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEE
Q 009206 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (540)
Q Consensus 143 ~~~F~~~v~--~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl 220 (540)
.++|++.+. .+++++|.|||+||++|+.+.|.++++++.+ +.+.+++||++++.....++++++ |+++||+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~------V~~~Pt~ 75 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREK------IIEVPHF 75 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcC------CCcCCEE
Confidence 456777773 3899999999999999999999999999998 556899999997754456899998 9999999
Q ss_pred EEeCCCCCCCCCcccccCCCCHHHHHHHHH
Q 009206 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (540)
Q Consensus 221 ~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~ 250 (540)
++|++|.. ...+.| ...+.|..-+.
T Consensus 76 ~~~~~G~~----v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 76 LFYKDGEK----IHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EEEeCCeE----EEEEeC-CCHHHHHHHHH
Confidence 99999864 567778 44566665544
No 72
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.4e-15 Score=153.45 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=64.7
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC------cHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..|+|.+|+|+++||.+|||+|||++++.+||||..+ +++.|++|.+|||+|+||.+|..||.||++|+.
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 4589999999999999999999999999999998752 456799999999999999999999999999876
No 73
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.8e-15 Score=155.66 Aligned_cols=68 Identities=31% Similarity=0.557 Sum_probs=63.4
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~----~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
.|||++|||+++|+.+|||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||+||+.+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 599999999999999999999999999999999874 34789999999999999999999999998754
No 74
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.6e-15 Score=156.13 Aligned_cols=68 Identities=26% Similarity=0.462 Sum_probs=63.5
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
.|||++|||+++||.+|||+|||+|+++||||+++ .+.++|++|++||++|+|+.+|+.||+||.++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 59999999999999999999999999999999986 356789999999999999999999999998764
No 75
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.55 E-value=3.9e-15 Score=164.47 Aligned_cols=70 Identities=26% Similarity=0.404 Sum_probs=65.2
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..+||++|||+++||..+||+|||+||++||||++++ +.++|++|++||++|+||.+|+.||.||..+..
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 5799999999999999999999999999999999874 467899999999999999999999999988754
No 76
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.54 E-value=4.9e-15 Score=154.55 Aligned_cols=68 Identities=31% Similarity=0.543 Sum_probs=63.4
Q ss_pred ccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 38 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
|||++|||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||+||.++..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 7999999999999999999999999999999986 3567999999999999999999999999987643
No 77
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=6.2e-15 Score=154.58 Aligned_cols=68 Identities=26% Similarity=0.515 Sum_probs=63.8
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
.|||+||||+++|+.++||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||.||.++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 59999999999999999999999999999999986 467899999999999999999999999998754
No 78
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.54 E-value=2.3e-15 Score=130.03 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=68.2
Q ss_pred CCcccccc--CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEE
Q 009206 144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (540)
Q Consensus 144 ~~F~~~v~--~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~ 221 (540)
++|+..+. ++++++|.|||+||++|+.|.|.++++|.++.+.+.+++||+++++. ++++++ |.++||++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~---la~~~~------V~~iPTf~ 73 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD---FNKMYE------LYDPPTVM 73 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH---HHHHcC------CCCCCEEE
Confidence 45666673 67899999999999999999999999999998888999999997775 999999 99999999
Q ss_pred EeCCCCC
Q 009206 222 AFPPGCK 228 (540)
Q Consensus 222 ~f~~g~~ 228 (540)
+|++|+.
T Consensus 74 ~fk~G~~ 80 (114)
T cd02954 74 FFFRNKH 80 (114)
T ss_pred EEECCEE
Confidence 9999964
No 79
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=6.3e-15 Score=155.24 Aligned_cols=69 Identities=25% Similarity=0.490 Sum_probs=64.0
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+++|+.+|||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||..+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 4699999999999999999999999999999999874 46789999999999999999999999998754
No 80
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=6.7e-15 Score=154.35 Aligned_cols=67 Identities=27% Similarity=0.522 Sum_probs=63.2
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHHHcCChhhhhhhhhccchh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 103 (540)
.|||++|||+++|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||+||.++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 489999999999999999999999999999999863 5788999999999999999999999999875
No 81
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.53 E-value=8.3e-15 Score=125.30 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=80.1
Q ss_pred eCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCCCCccceeeeeeE
Q 009206 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS 219 (540)
Q Consensus 141 lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Pt 219 (540)
-|.++|+++++++++++|.|||+||++|+.+.|.++++++.+++. ..++.||++ ++. ++++++ |+++||
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~---~~~~~~------v~~~Pt 74 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID---TLKRYR------GKCEPT 74 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH---HHHHcC------CCcCcE
Confidence 466788888888999999999999999999999999999999754 489999999 333 788988 999999
Q ss_pred EEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 009206 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (540)
Q Consensus 220 l~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~ 251 (540)
+++|++|.. .....| .+.+.|.+++.+
T Consensus 75 ~~~~~~g~~----~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 75 FLFYKNGEL----VAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEECCEE----EEEEec-CChHHHHHHHhh
Confidence 999999864 344456 478888888753
No 82
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.4e-15 Score=147.30 Aligned_cols=68 Identities=28% Similarity=0.601 Sum_probs=63.7
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccchh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 103 (540)
..|||++|||+++|+..|||+||++|+++||||.|. ++.++|++|.+|||+|+|+++|+.||.+|..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 449999999999999999999999999999999776 57889999999999999999999999999875
No 83
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.3e-15 Score=146.42 Aligned_cols=69 Identities=25% Similarity=0.393 Sum_probs=64.5
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCc---HHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS---TADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
..|||++|||+..|+..+|++|||+.+++|||||||++ .++|+.|.+||++|+|+..|..||.+|..+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 46999999999999999999999999999999999864 6789999999999999999999999998763
No 84
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8.3e-15 Score=137.45 Aligned_cols=68 Identities=24% Similarity=0.450 Sum_probs=62.9
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC-----CcHHHHHHHHHHHHHcCChhhhhhhhhccchh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI-----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 103 (540)
..|+|+||||.++|+..+|++||++|+++||||+++ .+.++|++|+.||.||+|.++|+.||.-|.-.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 569999999999999999999999999999999985 35678999999999999999999999988654
No 85
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.52 E-value=1.6e-14 Score=124.02 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=85.8
Q ss_pred eEEeCCCCccccccCCCcEEEEEEecC--CCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceee
Q 009206 138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (540)
Q Consensus 138 V~~lt~~~F~~~v~~~~~~lV~FYapw--C~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~ 215 (540)
...+|..||++.+..+.+.+|.||++| |++|..+.|.++++|+++.+...+++||+++++. ++.+|+ |+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~---la~~f~------V~ 82 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA---LAARFG------VL 82 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH---HHHHcC------CC
Confidence 456899999998989999999999997 9999999999999999999888999999997764 999999 99
Q ss_pred eeeEEEEeCCCCCCCCCcccccCCCCHHHHH
Q 009206 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (540)
Q Consensus 216 ~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~ 246 (540)
++||+++|++|+. ...+.|..+.+.++
T Consensus 83 sIPTli~fkdGk~----v~~~~G~~~~~e~~ 109 (111)
T cd02965 83 RTPALLFFRDGRY----VGVLAGIRDWDEYV 109 (111)
T ss_pred cCCEEEEEECCEE----EEEEeCccCHHHHh
Confidence 9999999999965 45677888777664
No 86
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.52 E-value=1.8e-14 Score=121.74 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=85.3
Q ss_pred eCCCCcccccc-CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeE
Q 009206 141 VTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS 219 (540)
Q Consensus 141 lt~~~F~~~v~-~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Pt 219 (540)
++.++|.+.+. .+++++|.||++||++|+++.|.++++++.+.+...++.|||+.++. ++++++ |.++||
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~~P~ 71 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD---IAAKYG------IRSIPT 71 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH---HHHHcC------CCcCCE
Confidence 35567777774 45699999999999999999999999999998778999999997665 889988 999999
Q ss_pred EEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 220 l~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+++|++|.. ...+.|..+.+.|.+|+.+.
T Consensus 72 ~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 72 LLLFKNGKE----VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred EEEEeCCcE----eeeecCCCCHHHHHHHHHhh
Confidence 999988864 45678999999999999765
No 87
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.51 E-value=1.2e-14 Score=132.66 Aligned_cols=90 Identities=16% Similarity=0.352 Sum_probs=75.0
Q ss_pred ceeEEeCCCCcccccc--CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCCCCccc
Q 009206 136 HAFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF 212 (540)
Q Consensus 136 ~~V~~lt~~~F~~~v~--~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (540)
..|.+++.++|++.+. .+++|+|.||||||++|+++.|.|+++++++.+. ..+++|||++++. +|+++++...|
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~---la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN---VAEKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH---HHHHcCceecC
Confidence 3578899999999883 4579999999999999999999999999999754 6999999997765 89999843333
Q ss_pred eeeeeeEEEEeCCCCC
Q 009206 213 FRRGLPSLVAFPPGCK 228 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g~~ 228 (540)
.|+++||+++|++|+.
T Consensus 105 ~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 105 LSKQLPTIILFQGGKE 120 (152)
T ss_pred CcCCCCEEEEEECCEE
Confidence 3344999999999864
No 88
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.51 E-value=1.4e-14 Score=148.08 Aligned_cols=66 Identities=24% Similarity=0.471 Sum_probs=62.0
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccch
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 102 (540)
.|||++|||+++||.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||.+|..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 59999999999999999999999999999999985 4678999999999999999999999999854
No 89
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.48 E-value=1.9e-14 Score=125.39 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=75.4
Q ss_pred ceeEEeCCCCccccccCC---CcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccc
Q 009206 136 HAFNVVTSEDFPSIFHDS---KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (540)
Q Consensus 136 ~~V~~lt~~~F~~~v~~~---~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (540)
..|.+++.++|.+.+.+. .+++|.||+|||++|+.+.|.++++|+.+.+ .++++||++++ .++++++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~----- 73 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLD----- 73 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcC-----
Confidence 367889999999998433 8999999999999999999999999999864 58999999955 4899998
Q ss_pred eeeeeeEEEEeCCCCCCCCCcccccC
Q 009206 213 FRRGLPSLVAFPPGCKSSDCMTRFEG 238 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g~~~~~~~~~y~G 238 (540)
|+++||+++|++|+. ...+.|
T Consensus 74 -i~~~Pt~~~f~~G~~----v~~~~G 94 (113)
T cd02957 74 -IKVLPTLLVYKNGEL----IDNIVG 94 (113)
T ss_pred -CCcCCEEEEEECCEE----EEEEec
Confidence 999999999999964 345555
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.48 E-value=4.8e-14 Score=139.54 Aligned_cols=67 Identities=30% Similarity=0.484 Sum_probs=60.4
Q ss_pred CCccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC------cHHHHHHHHHHHHHcCChhhhhhhhhcc
Q 009206 34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDVYG 100 (540)
Q Consensus 34 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~~g 100 (540)
+..+|||+||||.++|+..||.+|||+||++||||..+. +..+|..|..|-+||+||++|+.||..-
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 347899999999999999999999999999999997753 3446999999999999999999999764
No 91
>PTZ00102 disulphide isomerase; Provisional
Probab=99.48 E-value=5.3e-14 Score=152.78 Aligned_cols=106 Identities=14% Similarity=0.241 Sum_probs=93.4
Q ss_pred ceeEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc--cceeeeeccchhhhhHHHHhCCCCccc
Q 009206 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIF 212 (540)
Q Consensus 136 ~~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~--~~v~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (540)
..|..|+.++|++.+ ++++++||.||||||+||+.+.|.|+++|+.+++. +.++.+||+.+.. +|++++
T Consensus 357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~---~~~~~~----- 428 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET---PLEEFS----- 428 (477)
T ss_pred CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc---chhcCC-----
Confidence 358899999999986 78899999999999999999999999999998753 5899999997765 678888
Q ss_pred eeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 009206 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v 253 (540)
|+++||+++|++|.. .+..|.|.++.++|.+|+.+.+
T Consensus 429 -v~~~Pt~~~~~~~~~---~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 429 -WSAFPTILFVKAGER---TPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred -CcccCeEEEEECCCc---ceeEecCcCCHHHHHHHHHHcC
Confidence 999999999998864 2457999999999999999874
No 92
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.47 E-value=5.5e-14 Score=108.00 Aligned_cols=55 Identities=31% Similarity=0.585 Sum_probs=51.2
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHcCChh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPL 91 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~----~~~~f~~i~~Ay~~L~d~~ 91 (540)
.|||++|||+++++.++||++||+|++++|||++++ ..+.|++|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999874 5678999999999999985
No 93
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.47 E-value=6e-14 Score=120.18 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=80.1
Q ss_pred CCccccccCCCcEEEEEEecCCCCccCChHHH---HHHHHHHhcccceeeeeccchh-hhhHHHHhCCCCccceeeeeeE
Q 009206 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPS 219 (540)
Q Consensus 144 ~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~~~v~~Vdc~~~~-~~~~l~~~~~~~~~~~V~~~Pt 219 (540)
++|.+.+.+++++||.||++||++|+.+.|.+ .++++.+.+...++.||++++. ....++++++ |.++||
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~------i~~~Pt 75 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG------VFGPPT 75 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC------CCCCCE
Confidence 35667778899999999999999999999999 6888888876689999998532 2345889998 999999
Q ss_pred EEEeCC--CCCCCCCcccccCCCCHHHHHHHH
Q 009206 220 LVAFPP--GCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 220 l~~f~~--g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
+++|.+ |.. +..+.|.++.+.|.+++
T Consensus 76 i~~~~~~~g~~----~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 76 YLFYGPGGEPE----PLRLPGFLTADEFLEAL 103 (104)
T ss_pred EEEECCCCCCC----CcccccccCHHHHHHHh
Confidence 999984 543 57788999999998886
No 94
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.47 E-value=7.1e-14 Score=105.37 Aligned_cols=52 Identities=37% Similarity=0.636 Sum_probs=49.2
Q ss_pred ccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCC
Q 009206 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTD 89 (540)
Q Consensus 38 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d 89 (540)
|||++|||+++++.++||++||+|+++||||++++ +.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999875 67789999999999986
No 95
>PHA03102 Small T antigen; Reviewed
Probab=99.46 E-value=4.8e-14 Score=127.49 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=62.7
Q ss_pred cccccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChhhhhhhhhccchhh
Q 009206 37 PSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 37 ~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
...|++|||+++| |.++||+|||++++++|||++ ++.++|++|++||++|+|+..|..||.+|.+..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg-g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-chhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 4679999999999 999999999999999999997 567899999999999999999999999998764
No 96
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.45 E-value=1.2e-13 Score=120.40 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=73.4
Q ss_pred eeEEeCC-CCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceee
Q 009206 137 AFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (540)
Q Consensus 137 ~V~~lt~-~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~ 215 (540)
.+..++. ++|.+.+.++.+++|.||+|||++|+.+.|.++++++.+.+ .++.+||+++++. ++++++ |+
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~---l~~~~~------v~ 74 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPF---LVEKLN------IK 74 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHH---HHHHCC------Cc
Confidence 4677877 88999998889999999999999999999999999998754 5999999997665 889998 99
Q ss_pred eeeEEEEeCCCCC
Q 009206 216 GLPSLVAFPPGCK 228 (540)
Q Consensus 216 ~~Ptl~~f~~g~~ 228 (540)
++||+++|++|..
T Consensus 75 ~vPt~l~fk~G~~ 87 (113)
T cd02989 75 VLPTVILFKNGKT 87 (113)
T ss_pred cCCEEEEEECCEE
Confidence 9999999999964
No 97
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-13 Score=130.99 Aligned_cols=92 Identities=24% Similarity=0.299 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHHHHcC
Q 009206 11 KAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS--TADFLKIQYAYELLT 88 (540)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~--~~~f~~i~~Ay~~L~ 88 (540)
+++++.++++..+++..+.--..+...|+|++|||.+.++..+|.+|||+||+++|||++++. .+.|+.|..||++|.
T Consensus 7 ~rw~Lvl~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 7 ERWCLVLILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILK 86 (329)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhccccccc
Confidence 455555555555555444433445578999999999999999999999999999999988754 456999999999999
Q ss_pred Chhhhhhhhhccch
Q 009206 89 DPLWKRNYDVYGID 102 (540)
Q Consensus 89 d~~~r~~yd~~g~~ 102 (540)
|.+.|..||-.-+-
T Consensus 87 d~e~rt~ydyaldh 100 (329)
T KOG0722|consen 87 DNETRTQYDYALDH 100 (329)
T ss_pred chhhHHhHHHHhcC
Confidence 99999999977543
No 98
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.6e-13 Score=145.02 Aligned_cols=106 Identities=23% Similarity=0.453 Sum_probs=92.4
Q ss_pred eeEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhc--ccceeeeeccchhhhhHHHHhCCCCccce
Q 009206 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFF 213 (540)
Q Consensus 137 ~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~--~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (540)
.|..++..+|...+ +.+..|||.||+|||+||+.++|+|+++|..++. .+.++++||+.+. .+|++++
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~---~~~~~~~------ 215 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHK---SLASRLE------ 215 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHH---HHhhhhc------
Confidence 48999999999887 7889999999999999999999999999999973 4599999999444 4889998
Q ss_pred eeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhh
Q 009206 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL 254 (540)
Q Consensus 214 V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~ 254 (540)
|++|||+++|++|.. ....|.|.|+.+.|+.|+.+...
T Consensus 216 v~~~Pt~~~f~~~~~---~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE---DIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred ccCCceEEEecCCCc---ccccccccccHHHHHHHHHhhcC
Confidence 999999999999863 23567899999999999988743
No 99
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.42 E-value=3.7e-13 Score=122.17 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=83.0
Q ss_pred CCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEE
Q 009206 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (540)
Q Consensus 143 ~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~ 222 (540)
...|+..+..+++++|.|||+||++|+.+.|.++++++.+.+...|..||++.+.. ..++++++ |.++||+++
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-~~~~~~~~------V~~iPt~v~ 82 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-LPEIDRYR------VDGIPHFVF 82 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-HHHHHHcC------CCCCCEEEE
Confidence 34566667789999999999999999999999999999997767888888775421 24788888 999999999
Q ss_pred eC-CCCCCCCCcccccCCCCHHHHHHHHHHhhh
Q 009206 223 FP-PGCKSSDCMTRFEGELSVDAVTDWFATAIL 254 (540)
Q Consensus 223 f~-~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~ 254 (540)
|. +|.. ...+.|..+.+.|.+++.+.+.
T Consensus 83 ~~~~G~~----v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 83 LDREGNE----EGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred ECCCCCE----EEEEeCCCCHHHHHHHHHHHHc
Confidence 95 5643 4567899999999999988654
No 100
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.39 E-value=3.3e-13 Score=146.36 Aligned_cols=67 Identities=28% Similarity=0.542 Sum_probs=62.2
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHHHcCChhhhhhhhhccchh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 103 (540)
.|||++|||+++|+.++||+|||+|+++||||++++ +.++|++|++||++|+||.+|+.||.||..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 599999999999999999999999999999999863 4567999999999999999999999998765
No 101
>PTZ00051 thioredoxin; Provisional
Probab=99.39 E-value=4.1e-13 Score=113.45 Aligned_cols=93 Identities=16% Similarity=0.312 Sum_probs=75.5
Q ss_pred EEeCC-CCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeee
Q 009206 139 NVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (540)
Q Consensus 139 ~~lt~-~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~ 217 (540)
.+++. ++|..+++.+++++|.||++||++|+++.|.|+++++.+.+ ..++.||+++++. ++++++ |.++
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~---~~~~~~------v~~~ 72 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSE---VAEKEN------ITSM 72 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHH---HHHHCC------Ccee
Confidence 44444 56788788899999999999999999999999999997654 5899999996654 889998 9999
Q ss_pred eEEEEeCCCCCCCCCcccccCCCCHHHHH
Q 009206 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (540)
Q Consensus 218 Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~ 246 (540)
||+++|++|+. ...+.|. ..++|.
T Consensus 73 Pt~~~~~~g~~----~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 73 PTFKVFKNGSV----VDTLLGA-NDEALK 96 (98)
T ss_pred eEEEEEeCCeE----EEEEeCC-CHHHhh
Confidence 99999998864 4566674 445543
No 102
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.39 E-value=2.8e-13 Score=114.17 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=75.0
Q ss_pred CCCccccccC--CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEE
Q 009206 143 SEDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (540)
Q Consensus 143 ~~~F~~~v~~--~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl 220 (540)
.++|++.+.. +++++|.||++||++|+++.|.++++++.+.+...+.+||+++.+. ++++++ |.++||+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~---~~~~~~------i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE---ISEKFE------ITAVPTF 72 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH---HHHhcC------CccccEE
Confidence 3567777744 4999999999999999999999999999986667999999996654 889998 9999999
Q ss_pred EEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 221 ~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
++|.+|.. ...+.| .+.++|.+.+
T Consensus 73 ~~~~~g~~----~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 73 VFFRNGTI----VDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEECCEE----EEEEeC-CCHHHHHHhh
Confidence 99998854 344455 4566666654
No 103
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.38 E-value=9.1e-13 Score=108.50 Aligned_cols=92 Identities=17% Similarity=0.309 Sum_probs=79.5
Q ss_pred CCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEe
Q 009206 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (540)
Q Consensus 144 ~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f 223 (540)
++|++.+..+++++|.||++||++|+.+.|.++++++. .+...++.+||+.++. ++++++ +.++||+++|
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~------v~~~P~~~~~ 70 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE---LAEEYG------VRSIPTFLFF 70 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh---HHHhcC------cccccEEEEE
Confidence 35777776779999999999999999999999999988 5667999999996554 888988 9999999999
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 224 PPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 224 ~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
.+|.. ...+.|..+.+.|.+|+
T Consensus 71 ~~g~~----~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 71 KNGKE----VDRVVGADPKEELEEFL 92 (93)
T ss_pred ECCEE----EEEEecCCCHHHHHHHh
Confidence 98864 46778988889999886
No 104
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.2e-12 Score=112.19 Aligned_cols=84 Identities=13% Similarity=0.202 Sum_probs=70.1
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~ 231 (540)
.+++++|.|||+|||.|+.++|.++++|.++.+ +.|.+||+++ ...+|++++ |+..||+++|++|..
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~------V~~~PTf~f~k~g~~--- 86 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFN------VKAMPTFVFYKGGEE--- 86 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcC------ceEeeEEEEEECCEE---
Confidence 469999999999999999999999999999988 8999999998 345899998 999999999999975
Q ss_pred CcccccCCCCHHHHHHHHH
Q 009206 232 CMTRFEGELSVDAVTDWFA 250 (540)
Q Consensus 232 ~~~~y~G~~~~~~i~~fi~ 250 (540)
..++-|.. .+.+.+.+.
T Consensus 87 -~~~~vGa~-~~~l~~~i~ 103 (106)
T KOG0907|consen 87 -VDEVVGAN-KAELEKKIA 103 (106)
T ss_pred -EEEEecCC-HHHHHHHHH
Confidence 45555544 335555443
No 105
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.37 E-value=1.1e-12 Score=111.09 Aligned_cols=86 Identities=12% Similarity=0.158 Sum_probs=77.2
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCC
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~ 230 (540)
+.+++++|.||++||+.|+.+.|.++++++.+.+...+..||+++++. ++++++ |.++||+++|++|+.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~---l~~~~~------v~~vPt~~i~~~g~~-- 79 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE---IAEAAG------IMGTPTVQFFKDKEL-- 79 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH---HHHHCC------CeeccEEEEEECCeE--
Confidence 678899999999999999999999999999998777899999996665 888988 999999999998754
Q ss_pred CCcccccCCCCHHHHHHHH
Q 009206 231 DCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 231 ~~~~~y~G~~~~~~i~~fi 249 (540)
...+.|.++.+.|.+|+
T Consensus 80 --v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 80 --VKEISGVKMKSEYREFI 96 (97)
T ss_pred --EEEEeCCccHHHHHHhh
Confidence 57788999999999886
No 106
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.36 E-value=7.8e-13 Score=142.71 Aligned_cols=104 Identities=14% Similarity=0.305 Sum_probs=90.4
Q ss_pred ceeEEeCCCCccccc-cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhc---ccceeeeeccchhhhhHHHHhCCCCcc
Q 009206 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQI 211 (540)
Q Consensus 136 ~~V~~lt~~~F~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~~~v~~Vdc~~~~~~~~l~~~~~~~~~ 211 (540)
..|..|+..+|++.+ ++++.+||.||+|||++|+.+.|.|+++|+.+.+ .+.++.+||+.+. ++. ++
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~---- 416 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FE---- 416 (462)
T ss_pred CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CC----
Confidence 357889999999988 6789999999999999999999999999999988 4689999999654 223 55
Q ss_pred ceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 212 ~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|+++||+++|++|.. ..+..|.|.++.++|++|+.+.
T Consensus 417 --i~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 417 --VEGFPTIKFVPAGKK--SEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred --ccccCEEEEEeCCCC--cCceEecCcCCHHHHHHHHHhc
Confidence 999999999998864 1346799999999999999887
No 107
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.35 E-value=9e-13 Score=118.31 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=77.2
Q ss_pred CCCccccc--cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEE
Q 009206 143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (540)
Q Consensus 143 ~~~F~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl 220 (540)
..+|++.| ..+++++|.|||+|||+|+.+.|.++++|+++.+.+.|.+||+++++. ++++|+ |++.||+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d---la~~y~------I~~~~t~ 81 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD---FNTMYE------LYDPCTV 81 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH---HHHHcC------ccCCCcE
Confidence 46678877 467899999999999999999999999999999888999999997775 999999 9978776
Q ss_pred E-EeCCCCCCCCCcccccC--------CCCHHHHHHHHHH
Q 009206 221 V-AFPPGCKSSDCMTRFEG--------ELSVDAVTDWFAT 251 (540)
Q Consensus 221 ~-~f~~g~~~~~~~~~y~G--------~~~~~~i~~fi~~ 251 (540)
+ +|++|.. ......| ..+.++|.+-+..
T Consensus 82 ~~ffk~g~~---~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 82 MFFFRNKHI---MIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred EEEEECCeE---EEEEecccccccccccCCHHHHHHHHHH
Confidence 6 8898862 1344456 3455565555443
No 108
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.1e-12 Score=123.95 Aligned_cols=65 Identities=34% Similarity=0.617 Sum_probs=60.9
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCc----HHHHHHHHHHHHHcCChhhhhhhhhcc
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYG 100 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~r~~yd~~g 100 (540)
..+||++|||+++|+..+|++|||+++++||||+++.+ .++|..|++||++|+|+..|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45899999999999999999999999999999999854 488999999999999999999999985
No 109
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.27 E-value=6.2e-12 Score=109.60 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=77.8
Q ss_pred ccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCC
Q 009206 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (540)
Q Consensus 146 F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~ 225 (540)
|...+.....++|.||++||++|+.+.|.+++++... +...+..||.++++. ++++++ |.++||+++|.+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~---l~~~~~------v~~vPt~~i~~~ 84 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE---KAEKYG------VERVPTTIFLQD 84 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH---HHHHcC------CCcCCEEEEEeC
Confidence 4444556677899999999999999999999999876 556899999997665 889998 999999999998
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 226 GCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 226 g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|... ....|.|..+...+.+|+...
T Consensus 85 g~~~--~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 85 GGKD--GGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred Ceec--ceEEEEecCchHHHHHHHHHH
Confidence 7431 123688988888999988764
No 110
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.26 E-value=5.3e-12 Score=118.49 Aligned_cols=81 Identities=15% Similarity=0.237 Sum_probs=70.7
Q ss_pred eeEEeCC-CCccccccC---CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccc
Q 009206 137 AFNVVTS-EDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (540)
Q Consensus 137 ~V~~lt~-~~F~~~v~~---~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (540)
.|.+++. ++|.+.|.. +.+++|.||+|||++|+.+.|.++++|..+. .++|.+||+++. .++.+++
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~----~l~~~f~----- 132 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT----GASDEFD----- 132 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch----hhHHhCC-----
Confidence 5788998 999999843 3499999999999999999999999999874 469999999954 4888988
Q ss_pred eeeeeeEEEEeCCCCC
Q 009206 213 FRRGLPSLVAFPPGCK 228 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g~~ 228 (540)
|+++|||++|++|..
T Consensus 133 -v~~vPTlllyk~G~~ 147 (175)
T cd02987 133 -TDALPALLVYKGGEL 147 (175)
T ss_pred -CCCCCEEEEEECCEE
Confidence 999999999999964
No 111
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.26 E-value=2.2e-10 Score=107.94 Aligned_cols=149 Identities=19% Similarity=0.370 Sum_probs=113.4
Q ss_pred cHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCC-CChhHHHHHHHhhccCCCccc
Q 009206 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQELPQL 371 (540)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~-~~~~~l~~fi~~~~~~~lp~l 371 (540)
...+..+|..+++.+.|+.+. +.+++++++++. |+|++|++++.++..|.|. ++.+.|.+||..+.+|+++++
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 445677899998888888876 346999999987 9999999988889999998 899999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCceeEEEEEecCC-ChhhHHHHHHHHHHHHhhccccccccccccCCchHHHHhccCCce
Q 009206 372 RSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRL 450 (540)
Q Consensus 372 ~~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 450 (540)
+..+.... ... ++ ...++++.+. ....+...+.++.+++ .+++ ++
T Consensus 83 t~~n~~~~-~~~------~~----~~~~~~~~~~~~~~~~~~~~~l~~~a~----------------------~~~~-~~ 128 (184)
T PF13848_consen 83 TPENFEKL-FSS------PK----PPVLILFDNKDNESTEAFKKELQDIAK----------------------KFKG-KI 128 (184)
T ss_dssp STTHHHHH-HST------SS----EEEEEEEETTTHHHHHHHHHHHHHHHH----------------------CTTT-TS
T ss_pred chhhHHHH-hcC------CC----ceEEEEEEcCCchhHHHHHHHHHHHHH----------------------hcCC-eE
Confidence 99886552 211 11 2455566543 3455666667766666 5544 49
Q ss_pred EEEEEechhhHHHHHhhccCCccccccCCccCCCCCCeEEEEE
Q 009206 451 TFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVR 493 (540)
Q Consensus 451 ~f~wvd~~~q~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 493 (540)
.|+|+|++..++++..|...+ .+.|.++++.
T Consensus 129 ~f~~~d~~~~~~~~~~~~i~~------------~~~P~~vi~~ 159 (184)
T PF13848_consen 129 NFVYVDADDFPRLLKYFGIDE------------DDLPALVIFD 159 (184)
T ss_dssp EEEEEETTTTHHHHHHTTTTT------------SSSSEEEEEE
T ss_pred EEEEeehHHhHHHHHHcCCCC------------ccCCEEEEEE
Confidence 999999998899999774332 4568888885
No 112
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.25 E-value=8.6e-12 Score=110.12 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=82.0
Q ss_pred eEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchh--------hhhHHHHhCCCC
Q 009206 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIG 209 (540)
Q Consensus 138 V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~--------~~~~l~~~~~~~ 209 (540)
+..+|.++|.+.+.+++..+|.||++||++|+.+.|.+++++++ ....+..||.+.+. ....+.+++++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 46688888999999999999999999999999999999999997 33579999988442 233466666521
Q ss_pred ccceeeeeeEEEEeCCCCCCCCCcccccC-CCCHHHHHHHH
Q 009206 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWF 249 (540)
Q Consensus 210 ~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G-~~~~~~i~~fi 249 (540)
+.|.++||+++|++|+. .....| ..+.++|.+|+
T Consensus 86 --~~i~~~PT~v~~k~Gk~----v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 86 --TSFMGTPTFVHITDGKQ----VSVRCGSSTTAQELQDIA 120 (122)
T ss_pred --ccCCCCCEEEEEeCCeE----EEEEeCCCCCHHHHHHHh
Confidence 22778999999999965 455567 55788988885
No 113
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.25 E-value=4.1e-12 Score=109.07 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCcccccc--CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEE
Q 009206 144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (540)
Q Consensus 144 ~~F~~~v~--~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~ 221 (540)
+.|++.+. ++++++|.|+|+||+.|+.+.|.++++|+++++.+.|.+||+++.+. ++++++ |...||++
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d---va~~y~------I~amPtfv 73 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV---YTQYFD------ISYIPSTI 73 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH---HHHhcC------ceeCcEEE
Confidence 34566662 58999999999999999999999999999998768999999997665 999999 99999999
Q ss_pred EeCCCC
Q 009206 222 AFPPGC 227 (540)
Q Consensus 222 ~f~~g~ 227 (540)
+|.+|+
T Consensus 74 ffkngk 79 (114)
T cd02986 74 FFFNGQ 79 (114)
T ss_pred EEECCc
Confidence 999985
No 114
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.25 E-value=1.1e-11 Score=105.59 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=75.2
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceee--eeeEEEEeCC--CC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR--GLPSLVAFPP--GC 227 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~--~~Ptl~~f~~--g~ 227 (540)
.+.++++.||++||++|+.+.|.++++|+++++.+.++.||+++++. +++.++ |. ++|++++|.. |.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~---~~~~~~------i~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR---HLEYFG------LKEEDLPVIAIINLSDGK 81 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH---HHHHcC------CChhhCCEEEEEeccccc
Confidence 36899999999999999999999999999999989999999997654 889998 88 9999999998 53
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHh
Q 009206 228 KSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 228 ~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+ +....|..+.++|.+|+.+.
T Consensus 82 k----~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 82 K----YLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred c----cCCCccccCHHHHHHHHHhh
Confidence 3 23223556999999998753
No 115
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.24 E-value=1e-11 Score=114.98 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=55.7
Q ss_pred cccccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCCcHH------HHHHHHHHHHHcCChhhhhhhhhc
Q 009206 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTA------DFLKIQYAYELLTDPLWKRNYDVY 99 (540)
Q Consensus 37 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~------~f~~i~~Ay~~L~d~~~r~~yd~~ 99 (540)
.|||++|||++. ++..+|+++||+|++++|||++.+..+ .+..||+||++|+||.+|..|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 489999999997 789999999999999999999875433 367999999999999999999753
No 116
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.21 E-value=1.6e-11 Score=114.36 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=54.8
Q ss_pred cccccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCCc--------HHHHHHHHHHHHHcCChhhhhhhhh
Q 009206 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPS--------TADFLKIQYAYELLTDPLWKRNYDV 98 (540)
Q Consensus 37 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~r~~yd~ 98 (540)
.|||++|||++. ++..+|+++||+|++++|||+.++. .+.+..||+||++|+||.+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 6789999999999999999986532 3468999999999999999999974
No 117
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.20 E-value=2.6e-11 Score=123.51 Aligned_cols=94 Identities=23% Similarity=0.356 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHhcCC--CCccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--------cHHHHHH
Q 009206 11 KAYWAPLILFGLGLFYQ-LVVLPR--SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--------STADFLK 79 (540)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~--------~~~~f~~ 79 (540)
|.+.+.+.|+++.+|.+ +..+.. -..-|||+||||+.+++.++||++||+|+.++||||.+. -++.+.+
T Consensus 69 R~If~ivgWl~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ 148 (610)
T COG5407 69 RKIFTIVGWLVISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKT 148 (610)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHH
Confidence 44444556666665533 332111 225699999999999999999999999999999998763 2567999
Q ss_pred HHHHHHHcCChhhhhhhhhccchhh
Q 009206 80 IQYAYELLTDPLWKRNYDVYGIDEQ 104 (540)
Q Consensus 80 i~~Ay~~L~d~~~r~~yd~~g~~~~ 104 (540)
|++||+.|+|...|+.|-.||..+.
T Consensus 149 ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 149 ITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred HHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 9999999999999999999998653
No 118
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.19 E-value=3e-11 Score=112.92 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=56.2
Q ss_pred CCccccccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCCc--------HHHHHHHHHHHHHcCChhhhhhhhh
Q 009206 34 SFPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPS--------TADFLKIQYAYELLTDPLWKRNYDV 98 (540)
Q Consensus 34 ~~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~r~~yd~ 98 (540)
++..|||++|||++. ++..+|+++||+|++++|||++++. .+.+..||+||++|+||.+|..|..
T Consensus 3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 346799999999996 5789999999999999999997632 1236899999999999999999984
No 119
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.16 E-value=5.2e-11 Score=110.81 Aligned_cols=63 Identities=16% Similarity=0.354 Sum_probs=56.0
Q ss_pred ccccccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCCc--------HHHHHHHHHHHHHcCChhhhhhhhh
Q 009206 36 PPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPS--------TADFLKIQYAYELLTDPLWKRNYDV 98 (540)
Q Consensus 36 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~r~~yd~ 98 (540)
..|||++||+++. .+..+|+++||+|++++|||++.+. .+.+..||+||++|+||.+|..|+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 5699999999998 4579999999999999999997642 3469999999999999999999985
No 120
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.16 E-value=3.9e-11 Score=114.18 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=67.7
Q ss_pred eeEEeCCCCccccc-cC--CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccce
Q 009206 137 AFNVVTSEDFPSIF-HD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (540)
Q Consensus 137 ~V~~lt~~~F~~~v-~~--~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (540)
.|..+|..+|...| .+ +.+++|.||++||++|+.+.|.|+++|..+. .++|.+||++ . ++.+++
T Consensus 83 ~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad---~---~~~~~~------ 149 (192)
T cd02988 83 EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST---Q---CIPNYP------ 149 (192)
T ss_pred eEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH---H---hHhhCC------
Confidence 57889999998776 33 3589999999999999999999999999985 4689999988 3 356777
Q ss_pred eeeeeEEEEeCCCCC
Q 009206 214 RRGLPSLVAFPPGCK 228 (540)
Q Consensus 214 V~~~Ptl~~f~~g~~ 228 (540)
|+++|||++|++|..
T Consensus 150 i~~lPTlliyk~G~~ 164 (192)
T cd02988 150 DKNLPTILVYRNGDI 164 (192)
T ss_pred CCCCCEEEEEECCEE
Confidence 999999999999964
No 121
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.15 E-value=1.2e-10 Score=94.90 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=68.5
Q ss_pred EEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCccc
Q 009206 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (540)
Q Consensus 156 ~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~ 235 (540)
.+..||+|||++|+.+.|.++++++++.+...+..||+++++. ++++++ |+++||+++ +|. ..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~vPt~~~--~g~------~~ 64 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ---KAMEYG------IMAVPAIVI--NGD------VE 64 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH---HHHHcC------CccCCEEEE--CCE------EE
Confidence 4678999999999999999999999998777899999996665 788888 999999986 553 36
Q ss_pred ccCCCCHHHHHHHHHHh
Q 009206 236 FEGELSVDAVTDWFATA 252 (540)
Q Consensus 236 y~G~~~~~~i~~fi~~~ 252 (540)
+.|..+.+.|.+++.+.
T Consensus 65 ~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 65 FIGAPTKEELVEAIKKR 81 (82)
T ss_pred EecCCCHHHHHHHHHhh
Confidence 78999999999988764
No 122
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.5e-11 Score=112.78 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=81.6
Q ss_pred eEEeC-CCCcccccc--CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCcccee
Q 009206 138 FNVVT-SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (540)
Q Consensus 138 V~~lt-~~~F~~~v~--~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V 214 (540)
|.+++ +.+|+..+. ..+.++|.|||.|||+|++++|.|+.+|..+.+ ..+.+||+++-+. .+..+| |
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~---taa~~g------V 72 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRG---TAATNG------V 72 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhc---hhhhcC------c
Confidence 44444 567888883 567999999999999999999999999999954 4699999994444 667777 9
Q ss_pred eeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhh
Q 009206 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL 254 (540)
Q Consensus 215 ~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~ 254 (540)
+..||+++|++|.+ ...+.| .++.+|..-+.+.+.
T Consensus 73 ~amPTFiff~ng~k----id~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 73 NAMPTFIFFRNGVK----IDQIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred ccCceEEEEecCeE----eeeecC-CCHHHHHHHHHHHhc
Confidence 99999999999976 355555 567888888877744
No 123
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.14 E-value=4.6e-11 Score=102.58 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=48.7
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcC
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~ 88 (540)
..++|++|||++++|.+|||++||+|++++|||++ ++.+.|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999985 78889999999999985
No 124
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.12 E-value=6.9e-11 Score=104.68 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=75.2
Q ss_pred cccccCC-CcEEEEEEecCCCCccCChHHHH---HHHHHHhcccceeeeeccchh----------hhhHHHHhCCCCccc
Q 009206 147 PSIFHDS-KPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIF 212 (540)
Q Consensus 147 ~~~v~~~-~~~lV~FYapwC~~C~~l~p~~~---~~A~~l~~~~~v~~Vdc~~~~----------~~~~l~~~~~~~~~~ 212 (540)
....+++ ++++|.||++||++|+++.|.+. .+...+.+...+..||.+++. ....++.+++
T Consensus 7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~----- 81 (125)
T cd02951 7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR----- 81 (125)
T ss_pred HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC-----
Confidence 3445677 99999999999999999999985 566666655578888887541 1234888888
Q ss_pred eeeeeeEEEEeCCC-CCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 213 FRRGLPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g-~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|+++||+++|.++ .. ....+.|..+.+.+..++...
T Consensus 82 -v~~~Pt~~~~~~~gg~---~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 82 -VRFTPTVIFLDPEGGK---EIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred -CccccEEEEEcCCCCc---eeEEecCCCCHHHHHHHHHHH
Confidence 9999999999875 33 246778999988888887765
No 125
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.3e-11 Score=121.21 Aligned_cols=67 Identities=24% Similarity=0.368 Sum_probs=62.3
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhhccch
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 102 (540)
..|+|.+|||++++|.++||+.||++|...|||||- .+.|.|+.|+.||++|+|+++|+.||.-...
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 679999999999999999999999999999999875 6788999999999999999999999976544
No 126
>PTZ00062 glutaredoxin; Provisional
Probab=99.05 E-value=1.3e-09 Score=104.20 Aligned_cols=162 Identities=8% Similarity=-0.004 Sum_probs=101.5
Q ss_pred CCCccccccCC-CcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEE
Q 009206 143 SEDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (540)
Q Consensus 143 ~~~F~~~v~~~-~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~ 221 (540)
.+.|.+.+.++ ...++.|+|+||+.|+++.|..+++++++. .+.+..||.+ ++ |.++||++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d-----------~~------V~~vPtfv 67 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA-----------DA------NNEYGVFE 67 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc-----------cC------cccceEEE
Confidence 45566677543 788999999999999999999999999884 4689999966 45 99999999
Q ss_pred EeCCCCCCCCCcccccCCCCHHHHHHHHHHhhhcCCcccccccchhhhhhhhhcCCCceEEEEEeCC---CCCCcH-HHH
Q 009206 222 AFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT---GERASP-FVR 297 (540)
Q Consensus 222 ~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v~~lp~~~~i~~~~~~~~fl~~~~~~~~~vv~f~~~---~~~~~~-~~~ 297 (540)
+|++|+. ..++.|. ++..|..++.+.....+.... ...+++.++. .+++||-.++ ..|+.- ..+
T Consensus 68 ~~~~g~~----i~r~~G~-~~~~~~~~~~~~~~~~~~~~~---~~~v~~li~~----~~Vvvf~Kg~~~~p~C~~C~~~k 135 (204)
T PTZ00062 68 FYQNSQL----INSLEGC-NTSTLVSFIRGWAQKGSSEDT---VEKIERLIRN----HKILLFMKGSKTFPFCRFSNAVV 135 (204)
T ss_pred EEECCEE----EeeeeCC-CHHHHHHHHHHHcCCCCHHHH---HHHHHHHHhc----CCEEEEEccCCCCCCChhHHHHH
Confidence 9999965 5666664 488999999887433222111 1113333332 2434444321 122211 122
Q ss_pred HHHHhhccCceEEEEEeecccc--HHHHHHcCCCCCCEEEE
Q 009206 298 QISRNYWAYASFAFVLWREEES--SIWWNTFEVESAPAIVF 336 (540)
Q Consensus 298 ~~A~~~~~~~~f~~v~~~~~~~--~~l~~~f~V~~~Ptlv~ 336 (540)
.+...+ .+.|..+...+... +.+.+.-|-.+.|.|++
T Consensus 136 ~~L~~~--~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 136 NMLNSS--GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHc--CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 222222 45566665543221 34555556667887665
No 127
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.8e-10 Score=116.64 Aligned_cols=70 Identities=34% Similarity=0.543 Sum_probs=63.0
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCc----HHHHHHHHHHHHHcCChhhhhhhhhccchhhh
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 105 (540)
..|+|++|||.++|+.++|++|||+++++||||+|++. ..+|.++.+||++|+|+.+|..||++|+++..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 46999999999999999999999999999999998754 23699999999999999999999999985443
No 128
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.01 E-value=2e-10 Score=100.39 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=63.9
Q ss_pred CCCccccccC--CCcEEEEEEe-------cCCCCccCChHHHHHHHHHHhcccceeeeeccchhh----hhHHHHhCCCC
Q 009206 143 SEDFPSIFHD--SKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL----ATHLAERKPIG 209 (540)
Q Consensus 143 ~~~F~~~v~~--~~~~lV~FYa-------pwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~----~~~l~~~~~~~ 209 (540)
.++|.+.|.+ +++++|.||| +||++|+.+.|.+++++..+.+...+.+||+++.+. ...+..+++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~-- 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK-- 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC--
Confidence 3456666643 6899999999 999999999999999999998667899999985421 123677777
Q ss_pred ccceee-eeeEEEEeCCCC
Q 009206 210 QIFFRR-GLPSLVAFPPGC 227 (540)
Q Consensus 210 ~~~~V~-~~Ptl~~f~~g~ 227 (540)
|+ ++||+++|..|.
T Consensus 87 ----I~~~iPT~~~~~~~~ 101 (119)
T cd02952 87 ----LTTGVPTLLRWKTPQ 101 (119)
T ss_pred ----cccCCCEEEEEcCCc
Confidence 98 999999998764
No 129
>PHA02624 large T antigen; Provisional
Probab=99.00 E-value=2.7e-10 Score=122.84 Aligned_cols=60 Identities=12% Similarity=0.232 Sum_probs=57.3
Q ss_pred ccccccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChhhhhhh
Q 009206 36 PPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96 (540)
Q Consensus 36 ~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~r~~y 96 (540)
..++|++|||+++| +.++||+|||+++++||||++ ++.++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 56899999999999 999999999999999999996 6789999999999999999999998
No 130
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.95 E-value=2.9e-08 Score=93.36 Aligned_cols=169 Identities=14% Similarity=0.231 Sum_probs=122.5
Q ss_pred ChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccccCC-CCHHHHHHHH
Q 009206 171 FSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (540)
Q Consensus 171 l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~-~~~~~i~~fi 249 (540)
+...|.++|+.+.+...++.+.-. . +|++++ +.. |+|++|+++.. .+..|.|. .+.+.|.+||
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~~~---~---~~~~~~------~~~-p~i~~~k~~~~---~~~~y~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTFNE---E---LAKKYG------IKE-PTIVVYKKFDE---KPVVYDGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE-H---H---HHHHCT------CSS-SEEEEEECTTT---SEEEESSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEcHH---H---HHHHhC------CCC-CcEEEeccCCC---CceecccccCCHHHHHHHH
Confidence 456899999999988888888733 3 788888 778 99999998543 36889998 8999999999
Q ss_pred HHhhhcCCcccccccchhhhhhhhhcCCCceEEEEEeCCCCC----CcHHHHHHHHhhccCceEEEEEeeccccHHHHHH
Q 009206 250 ATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER----ASPFVRQISRNYWAYASFAFVLWREEESSIWWNT 325 (540)
Q Consensus 250 ~~~v~~lp~~~~i~~~~~~~~fl~~~~~~~~~vv~f~~~~~~----~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~ 325 (540)
... .+|.+..++..+ ...+.... ..+.+++|.++... ....++.+|..+++.+.|+.+... ..+.+++.
T Consensus 72 ~~~--~~P~v~~~t~~n-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~~~~~~~ 144 (184)
T PF13848_consen 72 KKN--SFPLVPELTPEN-FEKLFSSP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DFPRLLKY 144 (184)
T ss_dssp HHH--SSTSCEEESTTH-HHHHHSTS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TTHHHHHH
T ss_pred HHh--ccccccccchhh-HHHHhcCC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--HhHHHHHH
Confidence 998 688877777655 55655532 12345556532111 123345688889888888888754 23679999
Q ss_pred cCCC--CCCEEEEEeCCCCc-eeeecCCCChhHHHHHHHh
Q 009206 326 FEVE--SAPAIVFLKDPGVK-PVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 326 f~V~--~~Ptlv~fk~~~~~-~~~y~G~~~~~~l~~fi~~ 362 (540)
+|++ ..|+++++...... ...+.|.++.+.|.+|++.
T Consensus 145 ~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 145 FGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9998 68999999854433 2223788999999999863
No 131
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.5e-10 Score=113.10 Aligned_cols=67 Identities=28% Similarity=0.440 Sum_probs=61.2
Q ss_pred CCccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCc----HHHHHHHHHHHHHcCChhhhhhhhhcc
Q 009206 34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYG 100 (540)
Q Consensus 34 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~r~~yd~~g 100 (540)
+...|||.|||+.+.++..+||+|||++++.||||++.++ +.+|+++-+||.+|+||.+|..||..-
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 4467999999999999999999999999999999998765 446999999999999999999999764
No 132
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.92 E-value=7.7e-10 Score=110.58 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=48.6
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----------cHHHHHHHHHHHHHcCC
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----------STADFLKIQYAYELLTD 89 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~----------~~~~f~~i~~Ay~~L~d 89 (540)
..++|++|||++++|.++||++||+|+++||||++.+ +.++|++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999999631 35789999999999985
No 133
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.87 E-value=1.2e-09 Score=95.79 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=53.3
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeee--eeEEEEeC-CCC
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG--LPSLVAFP-PGC 227 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~--~Ptl~~f~-~g~ 227 (540)
.+++++||.|||+||++|+.+.|.+.+.+........+..|+.+.++.. +.+.++ +.| +||+++|. +|.
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~--~~~~~~------~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP--KDEEFS------PDGGYIPRILFLDPSGD 88 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc--hhhhcc------cCCCccceEEEECCCCC
Confidence 5789999999999999999999999998775543346777777754321 345555 665 99999996 564
Q ss_pred C
Q 009206 228 K 228 (540)
Q Consensus 228 ~ 228 (540)
.
T Consensus 89 ~ 89 (117)
T cd02959 89 V 89 (117)
T ss_pred C
Confidence 3
No 134
>PHA02125 thioredoxin-like protein
Probab=98.85 E-value=3.8e-09 Score=84.93 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=51.6
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccc
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y 236 (540)
+|.||+|||++|+.+.|.+++++ ..+..||+++++. ++++++ |.++||++ .|.. ...+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~---l~~~~~------v~~~PT~~---~g~~----~~~~ 59 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE---LTAKHH------IRSLPTLV---NTST----LDRF 59 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH---HHHHcC------CceeCeEE---CCEE----EEEE
Confidence 78999999999999999997653 3578899886554 889998 99999997 3432 2456
Q ss_pred cCC-CCHHHHHH
Q 009206 237 EGE-LSVDAVTD 247 (540)
Q Consensus 237 ~G~-~~~~~i~~ 247 (540)
.|. ++..+|.+
T Consensus 60 ~G~~~~~~~l~~ 71 (75)
T PHA02125 60 TGVPRNVAELKE 71 (75)
T ss_pred eCCCCcHHHHHH
Confidence 663 44455544
No 135
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.84 E-value=7.5e-09 Score=100.67 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=68.0
Q ss_pred CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCC
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~ 232 (540)
+...++.||++||++|+.+.|.+++++.. .+.+.+..||.++++. ++++++ |.++||++++.+|
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~~---~~~~~~------V~~vPtl~i~~~~------ 196 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENPD---LAEKYG------VMSVPKIVINKGV------ 196 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCHH---HHHHhC------CccCCEEEEecCC------
Confidence 34455559999999999999999999987 3556788999996665 889998 9999999999766
Q ss_pred cccccCCCCHHHHHHHHHH
Q 009206 233 MTRFEGELSVDAVTDWFAT 251 (540)
Q Consensus 233 ~~~y~G~~~~~~i~~fi~~ 251 (540)
..|.|..+.+.|.+|+.+
T Consensus 197 -~~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 197 -EEFVGAYPEEQFLEYILS 214 (215)
T ss_pred -EEEECCCCHHHHHHHHHh
Confidence 237899999999999865
No 136
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.83 E-value=5.5e-09 Score=84.25 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=56.6
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccc
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y 236 (540)
-|.||++||++|+.+.|.|+++++++.....+..|| +. . .+.+++ |.+.|||++ +|.. .+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~-~---~a~~~~------v~~vPti~i--~G~~------~~ 61 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--DM-N---EILEAG------VTATPGVAV--DGEL------VI 61 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CH-H---HHHHcC------CCcCCEEEE--CCEE------EE
Confidence 389999999999999999999999997666787777 11 2 356677 999999999 6643 26
Q ss_pred cCC-CCHHHHHHHH
Q 009206 237 EGE-LSVDAVTDWF 249 (540)
Q Consensus 237 ~G~-~~~~~i~~fi 249 (540)
.|. .+.+.|.+++
T Consensus 62 ~G~~~~~~~l~~~l 75 (76)
T TIGR00412 62 MGKIPSKEEIKEIL 75 (76)
T ss_pred EeccCCHHHHHHHh
Confidence 775 4557777664
No 137
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.77 E-value=1e-08 Score=95.49 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=53.7
Q ss_pred cccccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCCc--------HHHHHHHHHHHHHcCChhhhhhhh
Q 009206 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPS--------TADFLKIQYAYELLTDPLWKRNYD 97 (540)
Q Consensus 37 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~r~~yd 97 (540)
.|||++||+++. .+..+++++||+|.+++|||+..+. .+.-..||+||.+|+||.+|+.|=
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 489999999997 7889999999999999999987532 234788999999999999999994
No 138
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.77 E-value=8.7e-09 Score=113.98 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=78.2
Q ss_pred CCCcccccc----CCCcEEEEEEecCCCCccCChHHH---HHHHHHHhcccceeeeeccch-hhhhHHHHhCCCCcccee
Q 009206 143 SEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFR 214 (540)
Q Consensus 143 ~~~F~~~v~----~~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~~~v~~Vdc~~~-~~~~~l~~~~~~~~~~~V 214 (540)
.++|++.+. ++++++|+|||+||++|+.+.|.. .++.+.+++ ..+.+||++++ +....++++++ |
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~------v 532 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYN------V 532 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcC------C
Confidence 456666662 478999999999999999999875 677777764 57889999854 23456889998 9
Q ss_pred eeeeEEEEeC-CCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 215 RGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 215 ~~~Ptl~~f~-~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
.++||+++|. +|+. ....++.|..+.+++.+++.+.
T Consensus 533 ~g~Pt~~~~~~~G~~--i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQE--IPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCC--cccccccCCCCHHHHHHHHHHh
Confidence 9999999997 4542 1124678999999999998764
No 139
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=8.5e-09 Score=94.89 Aligned_cols=65 Identities=26% Similarity=0.433 Sum_probs=57.6
Q ss_pred CccccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCcH----HHHHHHHHHHHHcCChhhhhhh-hhc
Q 009206 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRNY-DVY 99 (540)
Q Consensus 35 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~----~~f~~i~~Ay~~L~d~~~r~~y-d~~ 99 (540)
++.|+|++|.|.+..+.++||+.||+|++..|||+|+.+. ..|..+.+||.+|-|+..|..- |.|
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y 120 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVY 120 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999653 4599999999999999877654 344
No 140
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.76 E-value=2.3e-09 Score=101.64 Aligned_cols=101 Identities=12% Similarity=0.261 Sum_probs=87.1
Q ss_pred ceeEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchhhhhHHHHhCCCCcccee
Q 009206 136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFR 214 (540)
Q Consensus 136 ~~V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~~~~~l~~~~~~~~~~~V 214 (540)
+.+..++.+|+..++. .-|+++||||||+.|+.+.|.|+..|.--.+.. ++|.||.+.++. .+..|.|
T Consensus 24 s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg---------LsGRF~v 92 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG---------LSGRFLV 92 (248)
T ss_pred ceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc---------cceeeEE
Confidence 4688999999988774 459999999999999999999999998777765 999999997775 3344569
Q ss_pred eeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 215 ~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
...|||.=.++|. ..+|.|.|+.+++++|+..+
T Consensus 93 taLptIYHvkDGe-----FrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 93 TALPTIYHVKDGE-----FRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EecceEEEeeccc-----cccccCcccchhHHHHHHhh
Confidence 9999999999985 48899999999999999765
No 141
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.73 E-value=9.5e-09 Score=88.85 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=61.7
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHH---HHHHhcccceeeeeccchh-----------------hhhHHHHhCCCCc
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI---AALLEGIANTGMVELGDIR-----------------LATHLAERKPIGQ 210 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~---A~~l~~~~~v~~Vdc~~~~-----------------~~~~l~~~~~~~~ 210 (540)
.++++.+|.|++|||++|+++.+...+. +..++....+..+++.+.. ....+++.++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG--- 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC---
Confidence 3678999999999999999999888854 3444444577777777443 1234778888
Q ss_pred cceeeeeeEEEEeC-CCCCCCCCcccccCCCCHHHHHHHH
Q 009206 211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 211 ~~~V~~~Ptl~~f~-~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
|+++||++++. +|+. ...+.|..+.++|.+++
T Consensus 80 ---v~gtPt~~~~d~~G~~----v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 ---VNGTPTIVFLDKDGKI----VYRIPGYLSPEELLKML 112 (112)
T ss_dssp -----SSSEEEECTTTSCE----EEEEESS--HHHHHHHH
T ss_pred ---CCccCEEEEEcCCCCE----EEEecCCCCHHHHHhhC
Confidence 99999999996 5643 34678999999998764
No 142
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.61 E-value=1.2e-07 Score=88.42 Aligned_cols=91 Identities=10% Similarity=0.162 Sum_probs=72.0
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhh-------------------hhHHHHhCCCCcc
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------ATHLAERKPIGQI 211 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~-------------------~~~l~~~~~~~~~ 211 (540)
.+++++|.||++||+.|+...|.+.++++++.+. ..+..|++++... ...+++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---- 135 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYG---- 135 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcC----
Confidence 4688999999999999999999999999999765 4788888874321 123566666
Q ss_pred ceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 009206 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (540)
Q Consensus 212 ~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~ 251 (540)
|.++|+++++.+++. ....+.|..+.+.+.+++.+
T Consensus 136 --v~~~P~~~lid~~g~---i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 136 --VGPLPTTFLIDKDGK---VVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred --CCCcCeEEEECCCCc---EEEEEeCCCCHHHHHHHHHH
Confidence 899999988865432 24567899999999998865
No 143
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.56 E-value=9.1e-08 Score=88.04 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCC--------cHHHHHHHHHHHHHcCChhhhhhhhhc
Q 009206 49 SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVY 99 (540)
Q Consensus 49 a~~~~Ik~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 99 (540)
.+..+|+++||+|++++|||+.++ +.+.+..||+||++|+||.+|+.|+.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 467899999999999999998642 235699999999999999999999854
No 144
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.56 E-value=1.4e-07 Score=94.74 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=68.6
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh--------hhHHHHhCCCCccceeeeeeEEEEe
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--------ATHLAERKPIGQIFFRRGLPSLVAF 223 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~--------~~~l~~~~~~~~~~~V~~~Ptl~~f 223 (540)
.+++.||.||++||++|+++.|.+++++++.. ..|..|+.+.... ...++++++ |.++||++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g------V~~vPtl~Lv 236 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLK------IRTVPAVFLA 236 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcC------CCcCCeEEEE
Confidence 47899999999999999999999999999874 3555666553210 123678888 9999999999
Q ss_pred CC-CCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 224 PP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 224 ~~-g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
.+ |+. ......|..+.+.|.+.+...
T Consensus 237 ~~~~~~---v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 237 DPDPNQ---FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred ECCCCE---EEEEEeCCCCHHHHHHHHHHH
Confidence 87 432 122345889999999988765
No 145
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.55 E-value=1e-07 Score=74.59 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=47.9
Q ss_pred EEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEE
Q 009206 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (540)
Q Consensus 156 ~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~ 222 (540)
-++.||++||++|+++.|.+++++.. .+...+..+|.++++. ++++++ |.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~~~~---l~~~~~------i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAEFPD---LADEYG------VMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEcccCHh---HHHHcC------CcccCEEEE
Confidence 36789999999999999999999765 3446899999986654 888988 999999865
No 146
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.54 E-value=1.7e-07 Score=81.09 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=44.9
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEE
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl 220 (540)
.+++++|.||++||++|++..|.++++++...+.+.+..+.-++......++++++ +.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~------~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHG------LEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhC------CCCCcEE
Confidence 47899999999999999999999999988876555444442222223344677776 4456654
No 147
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.49 E-value=3.3e-07 Score=80.51 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=63.3
Q ss_pred eCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeec--------------------cchhhhh
Q 009206 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL--------------------GDIRLAT 200 (540)
Q Consensus 141 lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc--------------------~~~~~~~ 200 (540)
++.+.+......+++++|.||++||++|+.+.|.+.++++.+. ...|...++ +.+ .
T Consensus 8 ~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~ 83 (123)
T cd03011 8 LDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPD---G 83 (123)
T ss_pred CCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCC---c
Confidence 3344443333356899999999999999999999999987732 111211111 111 2
Q ss_pred HHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHH
Q 009206 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247 (540)
Q Consensus 201 ~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~ 247 (540)
.+++.++ |.++|+++++.+++. ...+.|..+.+.|.+
T Consensus 84 ~~~~~~~------i~~~P~~~vid~~gi----~~~~~g~~~~~~~~~ 120 (123)
T cd03011 84 VISARWG------VSVTPAIVIVDPGGI----VFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHHhCC------CCcccEEEEEcCCCe----EEEEeccCCHHHHHh
Confidence 3677777 999999999987643 456678888888754
No 148
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.48 E-value=1.2e-07 Score=83.73 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=55.4
Q ss_pred CccccccCCCcEEEEEEecCCCCccCChH-HHH--HHHHHHhcccceeeeeccchhhhhHHHHhCC--CCccceeeeeeE
Q 009206 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKP--IGQIFFRRGLPS 219 (540)
Q Consensus 145 ~F~~~v~~~~~~lV~FYapwC~~C~~l~p-~~~--~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~--~~~~~~V~~~Pt 219 (540)
.+.....+++++||.||++||+.|+.|.+ +|. ++++.+.....+.+||.++.+. +++.+. ..+.|++.|+||
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~---~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD---VDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH---HHHHHHHHHHHhcCCCCCCE
Confidence 34445578999999999999999999987 343 5677776666778889886554 332210 000122889999
Q ss_pred EEEeCCCC
Q 009206 220 LVAFPPGC 227 (540)
Q Consensus 220 l~~f~~g~ 227 (540)
++++.+..
T Consensus 84 ~vfl~~~G 91 (124)
T cd02955 84 NVFLTPDL 91 (124)
T ss_pred EEEECCCC
Confidence 99997654
No 149
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.47 E-value=3.9e-07 Score=83.57 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=63.5
Q ss_pred ccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh---------hhHHH-HhCCCCccceeeeeeE
Q 009206 150 FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL---------ATHLA-ERKPIGQIFFRRGLPS 219 (540)
Q Consensus 150 v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~---------~~~l~-~~~~~~~~~~V~~~Pt 219 (540)
+...+..+|.|||+||++|++..|.+++++++++ ..|..|+.++... ..... ..++. +.|.++||
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~---~~v~~iPT 121 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPN---PRPVVTPA 121 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhcc---CCCCCCCe
Confidence 3345566999999999999999999999998873 3565666664310 01122 23311 02889999
Q ss_pred EEEeCC-CCCCCCCcccccCCCCHHHHHHHHHH
Q 009206 220 LVAFPP-GCKSSDCMTRFEGELSVDAVTDWFAT 251 (540)
Q Consensus 220 l~~f~~-g~~~~~~~~~y~G~~~~~~i~~fi~~ 251 (540)
.+++.. |.. ....+.|..+.+.+.+.+.+
T Consensus 122 t~LID~~G~~---i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 122 TFLVNVNTRK---AYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred EEEEeCCCCE---EEEEeecccCHHHHHHHHHH
Confidence 999965 331 12346799999988877654
No 150
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.7e-07 Score=87.95 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=68.8
Q ss_pred eEEe-CCCCccccc--cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchhhhhHHHHhCCCCccce
Q 009206 138 FNVV-TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFF 213 (540)
Q Consensus 138 V~~l-t~~~F~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (540)
|.-+ +.+.++..+ +.+..|+|+||+-|.+.|.+++|.|.+++.++.... ++|+||....+ +.+++|+++-.=.
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp---d~a~kfris~s~~ 202 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP---DVAAKFRISLSPG 202 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCc---ChHHheeeccCcc
Confidence 3444 344555555 567899999999999999999999999999997665 99999999444 4888988532222
Q ss_pred eeeeeEEEEeCCCCC
Q 009206 214 RRGLPSLVAFPPGCK 228 (540)
Q Consensus 214 V~~~Ptl~~f~~g~~ 228 (540)
-+..||+++|..|+.
T Consensus 203 srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKE 217 (265)
T ss_pred cccCCeEEEEccchh
Confidence 458999999999964
No 151
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.43 E-value=5.5e-07 Score=97.48 Aligned_cols=88 Identities=20% Similarity=0.110 Sum_probs=67.1
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeec----------------------------cchhhhhH
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL----------------------------GDIRLATH 201 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc----------------------------~~~~~~~~ 201 (540)
..+++++|.|||+||++|++..|.+++++++++.. ..|..|+. +.+ ..
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~---~~ 130 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG---GT 130 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc---HH
Confidence 47889999999999999999999999999988632 34433332 211 23
Q ss_pred HHHhCCCCccceeeeeeEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHH
Q 009206 202 LAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (540)
Q Consensus 202 l~~~~~~~~~~~V~~~Ptl~~f-~~g~~~~~~~~~y~G~~~~~~i~~fi~~ 251 (540)
+++.++ |.++||++++ ++|.. ...+.|..+.+.|..++..
T Consensus 131 lak~fg------V~giPTt~IIDkdGkI----V~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 131 LAQSLN------ISVYPSWAIIGKDGDV----QRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHcC------CCCcCeEEEEcCCCeE----EEEEeCCCCHHHHHHHHHH
Confidence 566666 9999999666 66653 4667899999999999974
No 152
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.41 E-value=5e-07 Score=80.48 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=53.1
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc---cceeeeeccchhh---------------------hhHHHHhCC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL---------------------ATHLAERKP 207 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---~~v~~Vdc~~~~~---------------------~~~l~~~~~ 207 (540)
.++++||.||++||+.|++..|.+.++.+++... ..+..|+.+.... ...+++.++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4679999999999999999999999999988643 3566666653321 124666676
Q ss_pred CCccceeeeeeEEEEeCCC
Q 009206 208 IGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 208 ~~~~~~V~~~Ptl~~f~~g 226 (540)
|.++|+++++..+
T Consensus 97 ------v~~~P~~~lid~~ 109 (131)
T cd03009 97 ------IEGIPTLIILDAD 109 (131)
T ss_pred ------CCCCCEEEEECCC
Confidence 9999999999744
No 153
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.39 E-value=1e-06 Score=78.16 Aligned_cols=101 Identities=9% Similarity=0.077 Sum_probs=83.7
Q ss_pred EeCCCCccccccCCCcEEEEEEec--CCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCCCCccceeee
Q 009206 140 VVTSEDFPSIFHDSKPWLIQVYSD--GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (540)
Q Consensus 140 ~lt~~~F~~~v~~~~~~lV~FYap--wC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~ 216 (540)
.++..+++.++......++.|-.+ -++.+...+=+.+++++++.+. +++++||+++++. |+.+|+ |.+
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~---LA~~fg------V~s 91 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA---IGDRFG------VFR 91 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH---HHHHcC------Ccc
Confidence 355677777787777777766654 4678889999999999999744 7999999997766 999999 999
Q ss_pred eeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 009206 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (540)
Q Consensus 217 ~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v 253 (540)
+|||++|++|+. .....|.++.+.+.+|+.+.+
T Consensus 92 iPTLl~FkdGk~----v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 92 FPATLVFTGGNY----RGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred CCEEEEEECCEE----EEEEeCcCCHHHHHHHHHHHh
Confidence 999999999975 567789999999999998763
No 154
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.1e-07 Score=88.43 Aligned_cols=67 Identities=25% Similarity=0.250 Sum_probs=59.4
Q ss_pred ccccccccCccC---CCCHHHHHHHHHHHHHhcCCCCC-----CCcHHHHHHHHHHHHHcCChhhhhhhhhccch
Q 009206 36 PPSHYDALGIKP---YSSVEQVKEAYEKFSSKWNSGEE-----IPSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (540)
Q Consensus 36 ~~~~y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPD~~-----~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 102 (540)
..|+|.+|||+. .++..+|.++.++.+.+||||+. .++.+.|..|+.||++|+|+.+|..||.-...
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ 116 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence 579999999985 58899999999999999999975 35678899999999999999999999976544
No 155
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.37 E-value=4e-07 Score=80.60 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=56.2
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccch-hh-------------------hhHHHHhCCCCcc
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RL-------------------ATHLAERKPIGQI 211 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~-~~-------------------~~~l~~~~~~~~~ 211 (540)
.+++++|.||++||++|++..|.++++++... +.|..|+.++. .. ...+++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---- 97 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG---- 97 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC----
Confidence 47899999999999999999999999987752 44555553211 00 112455555
Q ss_pred ceeeeeeEEEEe-CCCCCCCCCcccccCCCCHHHH
Q 009206 212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAV 245 (540)
Q Consensus 212 ~~V~~~Ptl~~f-~~g~~~~~~~~~y~G~~~~~~i 245 (540)
|.++|+.+++ ++|.. ...+.|..+.+.|
T Consensus 98 --v~~~P~~~~ld~~G~v----~~~~~G~~~~~~~ 126 (127)
T cd03010 98 --VYGVPETFLIDGDGII----RYKHVGPLTPEVW 126 (127)
T ss_pred --CCCCCeEEEECCCceE----EEEEeccCChHhc
Confidence 9999965555 57753 4567788877654
No 156
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.36 E-value=7.3e-07 Score=79.68 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=52.8
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc---cceeeeeccchh-hh---------------------hHHHHhC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIR-LA---------------------THLAERK 206 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---~~v~~Vdc~~~~-~~---------------------~~l~~~~ 206 (540)
.+++++|.||++||++|+...|.++++++.+++. ..+..|++++.. .. ..+++.+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4689999999999999999999999999988754 356677766432 11 1234445
Q ss_pred CCCccceeeeeeEEEEeCCC
Q 009206 207 PIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 207 ~~~~~~~V~~~Ptl~~f~~g 226 (540)
+ |.++||++++..+
T Consensus 96 ~------v~~iPt~~lid~~ 109 (132)
T cd02964 96 K------VEGIPTLVVLKPD 109 (132)
T ss_pred C------CCCCCEEEEECCC
Confidence 5 9999999999743
No 157
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.32 E-value=5e-06 Score=72.29 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=69.2
Q ss_pred cccchhhhhhhhhcCCCceEEEEEe--CCCCCCcHHHHHHHHhhcc---CceEEEEEeec---cccHHHHHHcCCC--CC
Q 009206 262 YTKESMGKNFLAKTGPHKVKVIFFS--KTGERASPFVRQISRNYWA---YASFAFVLWRE---EESSIWWNTFEVE--SA 331 (540)
Q Consensus 262 i~~~~~~~~fl~~~~~~~~~vv~f~--~~~~~~~~~~~~~A~~~~~---~~~f~~v~~~~---~~~~~l~~~f~V~--~~ 331 (540)
+++.+ +++++.... .++|-|+. +-|.. .|.++.+|.+|.. .+.++.|...+ .+..+|+++|+|+ ++
T Consensus 6 L~~~n-F~~~v~~~~--~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 6 LDTVT-FYKVIPKFK--YSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred CChhh-HHHHHhcCC--cEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 34444 566776543 25555766 55544 4778888876633 45677776432 1236799999999 89
Q ss_pred CEEEEEeCCC-CceeeecCC-CChhHHHHHHHhh
Q 009206 332 PAIVFLKDPG-VKPVVYYGS-FNNSRLSEVMEQN 363 (540)
Q Consensus 332 Ptlv~fk~~~-~~~~~y~G~-~~~~~l~~fi~~~ 363 (540)
|||.+|++++ ..|..|.|. ++.+.|.+||+++
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999873 467889996 9999999999875
No 158
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.32 E-value=9.7e-07 Score=75.22 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=54.3
Q ss_pred CCcEEEEEEecCCCCccCChHHHHHHHHHHhc-ccceeeeeccch--hhh------------------hHHHHhCCCCcc
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI--RLA------------------THLAERKPIGQI 211 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~-~~~v~~Vdc~~~--~~~------------------~~l~~~~~~~~~ 211 (540)
+++++|.||++||++|+...+.+.++.+.+.. ...+..|+++.+ ... ..+++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 94 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG---- 94 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC----
Confidence 68999999999999999999999999999863 358999999863 111 22556666
Q ss_pred ceeeeeeEEEEeCCC
Q 009206 212 FFRRGLPSLVAFPPG 226 (540)
Q Consensus 212 ~~V~~~Ptl~~f~~g 226 (540)
+.++|+++++.++
T Consensus 95 --~~~~P~~~l~d~~ 107 (116)
T cd02966 95 --VRGLPTTFLIDRD 107 (116)
T ss_pred --cCccceEEEECCC
Confidence 8899999998643
No 159
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.30 E-value=1.8e-06 Score=71.74 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=59.9
Q ss_pred CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCC
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~ 232 (540)
+.+-+..|++|||++|....+.+++++... +...+..+|.++.+. ++++++ |.++||+++ +|.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e---~a~~~~------V~~vPt~vi--dG~----- 74 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQD---EVEERG------IMSVPAIFL--NGE----- 74 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHH---HHHHcC------CccCCEEEE--CCE-----
Confidence 455688899999999999999999999765 346899999885554 889999 999999964 664
Q ss_pred cccccCCCCHHHHH
Q 009206 233 MTRFEGELSVDAVT 246 (540)
Q Consensus 233 ~~~y~G~~~~~~i~ 246 (540)
..+.|..+.+.++
T Consensus 75 -~~~~G~~~~~e~~ 87 (89)
T cd03026 75 -LFGFGRMTLEEIL 87 (89)
T ss_pred -EEEeCCCCHHHHh
Confidence 3456766666654
No 160
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.25 E-value=4.6e-06 Score=74.42 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=63.6
Q ss_pred CCCccccccchhhhccCCCCCCCCCCCCceeEEEEEecCCC-----hhhHHHHHHHHHHHHhhccccccccccccCCchH
Q 009206 366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLS-----PELNKMRETIRRVQETLLSDDESNAADTDQSLAP 440 (540)
Q Consensus 366 ~~lp~l~~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 440 (540)
+.+.+|++++.++..|... ++|+|++.+.. ++.+++++.++++|+
T Consensus 2 ~~~~~l~~~~~~~~~C~~~-----------~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk------------------- 51 (130)
T cd02983 2 PEIIELTSEDVFEETCEEK-----------QLCIIAFLPHILDCQASCRNKYLEILKSVAE------------------- 51 (130)
T ss_pred CceEEecCHHHHHhhccCC-----------CeEEEEEcCccccCCHHHHHHHHHHHHHHHH-------------------
Confidence 4678999999999999331 59999998752 234566666666665
Q ss_pred HHHhccCCceEEEEEechhhHHHHHhhccCCccccccCCccCCCCCCeEEEEEee
Q 009206 441 AAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYK 495 (540)
Q Consensus 441 ~A~~~~~~~~~f~wvd~~~q~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 495 (540)
+|+++++.|+|+|++.|..+++.|..+. .+.|.++++...
T Consensus 52 ---~~kgk~i~Fv~vd~~~~~~~~~~fgl~~------------~~~P~v~i~~~~ 91 (130)
T cd02983 52 ---KFKKKPWGWLWTEAGAQLDLEEALNIGG------------FGYPAMVAINFR 91 (130)
T ss_pred ---HhcCCcEEEEEEeCcccHHHHHHcCCCc------------cCCCEEEEEecc
Confidence 8888889999999999999999985432 133777777654
No 161
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.22 E-value=1.9e-06 Score=80.79 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=63.7
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccch-hhhhHHHHhCC-------------CCccceeee
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLATHLAERKP-------------IGQIFFRRG 216 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~-~~~~~l~~~~~-------------~~~~~~V~~ 216 (540)
..+++++|.||++||++|++..|.++++++. + ..+..|+.++. ......+++++ +.+.|.+.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--G-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3578999999999999999999999988753 2 45555554321 11111222211 122455999
Q ss_pred eeEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 217 LPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 217 ~Ptl~~f-~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+|+.+++ ++|.. ...+.|..+.+.+.+++.+.
T Consensus 138 ~P~~~~id~~G~i----~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 138 APETFLVDGNGVI----LYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CCeEEEEcCCceE----EEEEeccCCHHHHHHHHHHH
Confidence 9965555 67753 35567999999999998765
No 162
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.21 E-value=3.1e-06 Score=80.35 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=64.7
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh-hhHHHHhCCC-------------Cccceeeee
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPI-------------GQIFFRRGL 217 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~-~~~l~~~~~~-------------~~~~~V~~~ 217 (540)
.+++++|.||++||++|++..|.+.++++. + ..|..|+.++++. .....+++++ .+.|.|.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 578999999999999999999999988652 2 3566677543321 2212222221 113559999
Q ss_pred eEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 218 PSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 218 Ptl~~f-~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|+.+++ ++|.. ...+.|..+.+.+.+++...
T Consensus 144 P~t~vid~~G~i----~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 144 PETFLIDGNGII----RYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred CeEEEECCCceE----EEEEecCCCHHHHHHHHHHH
Confidence 976555 56753 45677999999988888765
No 163
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.16 E-value=1.8e-05 Score=69.42 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=67.3
Q ss_pred cccchhhhhhhhhcCCCceEEEEEeCC------CC--CCcHHHHHHHHhh--ccCceEEEEEeeccccHHHHHHcCCCCC
Q 009206 262 YTKESMGKNFLAKTGPHKVKVIFFSKT------GE--RASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESA 331 (540)
Q Consensus 262 i~~~~~~~~fl~~~~~~~~~vv~f~~~------~~--~~~~~~~~~A~~~--~~~~~f~~v~~~~~~~~~l~~~f~V~~~ 331 (540)
+++.+ +++.+.+. ..++|++|... |. .+.|.+..+|..+ .+.+.|+.|+... ...++++|||.+.
T Consensus 14 lt~~n-F~~~v~~~--~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~i 88 (120)
T cd03065 14 LNEKN-YKQVLKKY--DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEE 88 (120)
T ss_pred CChhh-HHHHHHhC--CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCccc
Confidence 34333 45555543 24667777331 33 4556667777777 6678888887543 3789999999999
Q ss_pred CEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 009206 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 332 Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~ 362 (540)
|||++|+++. .+.|.|..+.+.|.+||.+
T Consensus 89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred cEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence 9999999765 3459999999999999985
No 164
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.14 E-value=2.3e-06 Score=71.58 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=37.1
Q ss_pred CCcEEEEEEecCCCCccCChHHHHHHHHHHh--cccceeeeeccch
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDI 196 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~--~~~~v~~Vdc~~~ 196 (540)
+++++|.|||+||++|++..|...++.+.++ +.+.+..|++++.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 5789999999999999999999999999998 4558888888754
No 165
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.14 E-value=6.4e-06 Score=71.63 Aligned_cols=98 Identities=8% Similarity=0.175 Sum_probs=71.6
Q ss_pred Cccccc----cCCCcEEEEEEecCCCCccCChH-HH--HHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeee
Q 009206 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (540)
Q Consensus 145 ~F~~~v----~~~~~~lV~FYapwC~~C~~l~p-~~--~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~ 217 (540)
+|++.+ .++++++|.|+++||..|+.|.. .| .++.+.+....-+.++|.++. ....+++.++ +.++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~------~~~~ 77 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYK------VDKY 77 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhC------ccCC
Confidence 344554 46899999999999999999865 45 345566665545556666542 3345888888 9999
Q ss_pred eEEEEeCC-CCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 218 PSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 218 Ptl~~f~~-g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|+++++.+ +.. ......|..+++.+.+-+.+.
T Consensus 78 P~~~~i~~~~g~---~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 78 PHIAIIDPRTGE---VLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred CeEEEEeCccCc---EeEEEcCCCCHHHHHHHHHHH
Confidence 99999965 222 256678999999998887765
No 166
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.13 E-value=4.6e-06 Score=75.77 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=53.2
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc--------cceeeeeccchhh-hhHHHHhCCC--------------
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRL-ATHLAERKPI-------------- 208 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~--------~~v~~Vdc~~~~~-~~~l~~~~~~-------------- 208 (540)
.+++++|.|+|+||+.|++..|...++.+.+.+. ..+..|+.+++.. .....++.++
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999998877642 3667777664321 2223333321
Q ss_pred -CccceeeeeeEEEEeCCC
Q 009206 209 -GQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 209 -~~~~~V~~~Ptl~~f~~g 226 (540)
.+.|.|.++||++++.+.
T Consensus 104 l~~~y~v~~iPt~vlId~~ 122 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPD 122 (146)
T ss_pred HHHHcCCCCCCEEEEECCC
Confidence 124459999999999754
No 167
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.8e-06 Score=79.18 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=48.3
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHH-HcCCh
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYE-LLTDP 90 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~Ay~-~L~d~ 90 (540)
..+|.+|||..+|+.++++.||..|++++|||... .++++|.+|.+||. +|+.-
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999754 56789999999999 77643
No 168
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.10 E-value=8.6e-06 Score=68.60 Aligned_cols=96 Identities=25% Similarity=0.393 Sum_probs=68.6
Q ss_pred cccchhhhhhhhhcCCCceEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEE
Q 009206 262 YTKESMGKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (540)
Q Consensus 262 i~~~~~~~~fl~~~~~~~~~vv~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~f 337 (540)
++.++ +++.+.. .+++.+|.|. +. |....|.+..++..+.+.+.|+.|... +...++++|+|.+.|++++|
T Consensus 4 lt~~~-f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 4 LTDEN-FEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp ESTTT-HHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEE
T ss_pred CCHHH-HHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCCCCEEEEE
Confidence 34444 4555554 2346666554 32 233467777788888777777777643 34789999999999999999
Q ss_pred eCCCCceeeecCCCChhHHHHHHHhh
Q 009206 338 KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 338 k~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
+++.... .|.|..+.+.|.+||++|
T Consensus 79 ~~g~~~~-~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVK-RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEE-EEESSSSHHHHHHHHHHH
T ss_pred ECCcEEE-EEECCCCHHHHHHHHHcC
Confidence 9765443 789999999999999875
No 169
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.04 E-value=8.9e-06 Score=96.23 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=68.2
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeec---cch---hh------------------hhHHHHhC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL---GDI---RL------------------ATHLAERK 206 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc---~~~---~~------------------~~~l~~~~ 206 (540)
.+++++|.|||+||++|++..|.++++++++++. +.|..|.+ +++ .. ...+.+++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4789999999999999999999999999999765 24444432 111 01 11234444
Q ss_pred CCCccceeeeeeEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 009206 207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (540)
Q Consensus 207 ~~~~~~~V~~~Ptl~~f-~~g~~~~~~~~~y~G~~~~~~i~~fi~~~v 253 (540)
+ |.++||++++ ++|+. ...+.|....+.|.+++.+.+
T Consensus 499 ~------V~~iPt~ilid~~G~i----v~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 G------VSSWPTFAVVSPNGKL----IAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred C------CCccceEEEECCCCeE----EEEEecccCHHHHHHHHHHHH
Confidence 4 9999999999 56753 456789999999999987753
No 170
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=5e-06 Score=92.72 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=46.3
Q ss_pred cccccccCccCC----CCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcC
Q 009206 37 PSHYDALGIKPY----SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (540)
Q Consensus 37 ~~~y~iLgv~~~----a~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~ 88 (540)
.+-|+||.|+-+ -..+.||++|++||.+|||||||...++|.++++|||.|.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 467999998743 3447899999999999999999999999999999999997
No 171
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.00 E-value=2.4e-05 Score=66.56 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=59.5
Q ss_pred eEEE-EEeC---CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCC-hh
Q 009206 280 VKVI-FFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN-NS 354 (540)
Q Consensus 280 ~~vv-~f~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~-~~ 354 (540)
+.+| |+.+ .+....|.+..++..+.+.+.|+.++... ...++++|+|.++||+++|++++.....|.|..+ .+
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~ 98 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDAD 98 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHH
Confidence 5455 4443 23445788888888887777777776432 3689999999999999999987667778999876 88
Q ss_pred HHHHHH
Q 009206 355 RLSEVM 360 (540)
Q Consensus 355 ~l~~fi 360 (540)
+|.+|+
T Consensus 99 ~l~~~i 104 (104)
T cd03004 99 SILEFI 104 (104)
T ss_pred HHHhhC
Confidence 888875
No 172
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.99 E-value=3.1e-05 Score=66.27 Aligned_cols=92 Identities=12% Similarity=0.162 Sum_probs=66.0
Q ss_pred hhhhhhhcCCCceEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC--
Q 009206 268 GKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-- 341 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~-- 341 (540)
+++.+... +++.+|.| .+ .|....+.+..++..+.+.+.|+.++........++++|+|.++|++++|++++
T Consensus 10 ~~~~i~~~--~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 87 (109)
T cd03002 10 FDKVVHNT--NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKA 87 (109)
T ss_pred HHHHHhcC--CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcc
Confidence 34555432 34445544 33 344467788888888877777777765443346799999999999999999876
Q ss_pred --CceeeecCCCChhHHHHHHH
Q 009206 342 --VKPVVYYGSFNNSRLSEVME 361 (540)
Q Consensus 342 --~~~~~y~G~~~~~~l~~fi~ 361 (540)
..+..|.|..+.+.|.+||.
T Consensus 88 ~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 88 SKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred cccccccccCccCHHHHHHHhC
Confidence 34567899999999999973
No 173
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.98 E-value=5.3e-06 Score=89.26 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=74.1
Q ss_pred eCCC-CccccccCC--CcEEEEEEecCCCCccCChHHHH-H--HHHHHhcccceeeeecc-chhhhhHHHHhCCCCccce
Q 009206 141 VTSE-DFPSIFHDS--KPWLIQVYSDGSYLCGQFSGAWK-T--IAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFF 213 (540)
Q Consensus 141 lt~~-~F~~~v~~~--~~~lV~FYapwC~~C~~l~p~~~-~--~A~~l~~~~~v~~Vdc~-~~~~~~~l~~~~~~~~~~~ 213 (540)
++.. ..++.+.++ +++++.|||+||-.||.+++.-= + ++..+.+ ..+-++|.+ .++...++-++++
T Consensus 459 ~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~------ 531 (569)
T COG4232 459 ISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLG------ 531 (569)
T ss_pred cCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcC------
Confidence 4443 455666444 49999999999999999887432 2 2233332 367889988 4566667888888
Q ss_pred eeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 214 V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+-|.|++++|..+..+ +..-.|..+.+.+.+++++.
T Consensus 532 ~~G~P~~~ff~~~g~e---~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 532 VFGVPTYLFFGPQGSE---PEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCCEEEEECCCCCc---CcCCcceecHHHHHHHHHHh
Confidence 9999999999955442 23368999999999999775
No 174
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.95 E-value=1.7e-05 Score=74.29 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=61.6
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchh----------hhhHHHHhCCCCcccee--eeeeEEEEeC
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFR--RGLPSLVAFP 224 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~----------~~~~l~~~~~~~~~~~V--~~~Ptl~~f~ 224 (540)
+|.||+.||++|++..|..++++++++ ..|-.|+.++.. ....+.+.++ + .++||.+++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g------~~~~~iPttfLId 144 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFP------NIPVATPTTFLVN 144 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhC------CCCCCCCeEEEEe
Confidence 778999999999999999999999974 455556666331 1112445555 4 6999999995
Q ss_pred -CCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 225 -PGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 225 -~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+|.. ....+.|..+.++|...+.+.
T Consensus 145 ~~G~i---~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 145 VNTLE---ALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred CCCcE---EEEEEECCCCHHHHHHHHHHH
Confidence 4432 123578999999998877765
No 175
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.95 E-value=4.8e-06 Score=67.99 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=47.5
Q ss_pred cCCCcEEEEEEecCCCCccCChHHH---HHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeC
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~ 224 (540)
.+++++||.||++||+.|+.|.... .++.+.+........||.++..... .+. ..++|+++++.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~----~~~------~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA----QFD------RQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH----HHH------HCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH----HhC------CccCCEEEEeC
Confidence 4799999999999999999998776 4555556666678888887544321 111 34799999874
No 176
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.95 E-value=3.2e-05 Score=67.28 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=59.5
Q ss_pred CceEEEEE-e---CCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHH-HHcCCCCCCEEEEEeCCCCceeeecCCCC
Q 009206 278 HKVKVIFF-S---KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWW-NTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (540)
Q Consensus 278 ~~~~vv~f-~---~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~-~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~ 352 (540)
+++.+|.| . ..+....|.+..+|..+++.+.|+.|+... ...++ ++|+|.++|||++|+++. .+..|.|..+
T Consensus 29 ~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~--~~~l~~~~~~I~~~PTl~lf~~g~-~~~~y~G~~~ 105 (113)
T cd03006 29 AEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW--PQGKCRKQKHFFYFPVIHLYYRSR-GPIEYKGPMR 105 (113)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--ChHHHHHhcCCcccCEEEEEECCc-cceEEeCCCC
Confidence 44555544 3 334556788899999888777777775322 35688 589999999999998654 5778999999
Q ss_pred hhHHHHHH
Q 009206 353 NSRLSEVM 360 (540)
Q Consensus 353 ~~~l~~fi 360 (540)
.+.|..|+
T Consensus 106 ~~~i~~~~ 113 (113)
T cd03006 106 APYMEKFV 113 (113)
T ss_pred HHHHHhhC
Confidence 99988874
No 177
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.92 E-value=1.8e-05 Score=59.10 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=49.4
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
++.|+++||++|+++.+.+.++ ........+..+++++..........++ +.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYG------VGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCC------CccccEEEEEeCC
Confidence 5789999999999999999998 4455556999999996655322223556 8899999999876
No 178
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.89 E-value=7e-05 Score=62.77 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=63.0
Q ss_pred hhhhhhhcCCCceEEE-EEeCCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceee
Q 009206 268 GKNFLAKTGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV 346 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv-~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~ 346 (540)
++.|+... .+.|| +|.+........+..+|..+++.+.|+.+. ...+.++++++ .|++++|++.++.++.
T Consensus 10 l~~~~~~~---~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~~~~~~ 80 (97)
T cd02981 10 LEKFLDKD---DVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFEEEPVE 80 (97)
T ss_pred HHHHhccC---CeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEC-----hHHHHHHcCCC-CCceEEeCCcccCCcc
Confidence 45566533 24455 554433334566777999998888888775 34578888875 5899999987777888
Q ss_pred ecCCCChhHHHHHHHhh
Q 009206 347 YYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 347 y~G~~~~~~l~~fi~~~ 363 (540)
|.|.++.+.|.+||..|
T Consensus 81 y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 81 YDGEFTEESLVEFIKDN 97 (97)
T ss_pred CCCCCCHHHHHHHHHhC
Confidence 99998889999999764
No 179
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.88 E-value=6.3e-05 Score=64.55 Aligned_cols=88 Identities=11% Similarity=0.171 Sum_probs=59.8
Q ss_pred hhhhhhhcCCCceEEEEE-eC---CCCCCcHHHHHHHHhhcc------CceEEEEEeeccccHHHHHHcCCCCCCEEEEE
Q 009206 268 GKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWA------YASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f-~~---~~~~~~~~~~~~A~~~~~------~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~f 337 (540)
+++.+.. +++.+|.| .+ .+....|.+..+|..+++ .+.|+.++... ...++++|+|.++|++++|
T Consensus 11 f~~~i~~---~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Ptl~~~ 85 (108)
T cd02996 11 IDDILQS---AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRINKYPTLKLF 85 (108)
T ss_pred HHHHHhc---CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCCcCCEEEEE
Confidence 4455533 34556655 33 344456777777776532 24555554322 3689999999999999999
Q ss_pred eCCCCceeeecCCCChhHHHHHH
Q 009206 338 KDPGVKPVVYYGSFNNSRLSEVM 360 (540)
Q Consensus 338 k~~~~~~~~y~G~~~~~~l~~fi 360 (540)
+++......|.|..+.++|.+||
T Consensus 86 ~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 86 RNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred eCCcCcceecCCCCCHHHHHhhC
Confidence 98764556789999999998885
No 180
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.86 E-value=2.8e-05 Score=68.78 Aligned_cols=73 Identities=12% Similarity=0.014 Sum_probs=50.3
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeecc------chhhhhHHHHhCCCC------------ccc
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG------DIRLATHLAERKPIG------------QIF 212 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~------~~~~~~~l~~~~~~~------------~~~ 212 (540)
.+++++|.||+.||+.|.+..|.++++.++++.. +.+..|+.. .........+++++. +.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 4689999999999999999999999999999754 355556542 112222334444321 124
Q ss_pred eeeeeeEEEEeC
Q 009206 213 FRRGLPSLVAFP 224 (540)
Q Consensus 213 ~V~~~Ptl~~f~ 224 (540)
.+.++|+.+++-
T Consensus 102 ~v~~~P~~~vid 113 (126)
T cd03012 102 GNQYWPALYLID 113 (126)
T ss_pred CCCcCCeEEEEC
Confidence 577888887774
No 181
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.86 E-value=6.2e-05 Score=63.72 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=57.9
Q ss_pred ceEEE-EEeC---CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChh
Q 009206 279 KVKVI-FFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (540)
Q Consensus 279 ~~~vv-~f~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~ 354 (540)
++.+| |+.+ .+....|.+..+|..+.+.+.|+.|+... .+.++++++|+++||+++|+++ .....|.|..+.+
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~~~~~ 95 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVNSYPSLYVFPSG-MNPEKYYGDRSKE 95 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCCccCEEEEEcCC-CCcccCCCCCCHH
Confidence 45455 4433 23445788888999887777777776433 3689999999999999999865 3455689999998
Q ss_pred HHHHH
Q 009206 355 RLSEV 359 (540)
Q Consensus 355 ~l~~f 359 (540)
.|.+|
T Consensus 96 ~l~~f 100 (101)
T cd03003 96 SLVKF 100 (101)
T ss_pred HHHhh
Confidence 88877
No 182
>smart00594 UAS UAS domain.
Probab=97.83 E-value=3.4e-05 Score=68.08 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=67.6
Q ss_pred Cccccc----cCCCcEEEEEEecCCCCccCChHH-HH--HHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeee
Q 009206 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSGA-WK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (540)
Q Consensus 145 ~F~~~v----~~~~~~lV~FYapwC~~C~~l~p~-~~--~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~ 217 (540)
+|++.+ .++++++|.|+++||..|+.+.-. |. ++.+.+....-+-.+|.+.... ..+++.++ +.++
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~~l~~~~~------~~~~ 87 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-QRVSQFYK------LDSF 87 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-HHHHHhcC------cCCC
Confidence 345554 467899999999999999998653 42 3445555544555667664433 35899988 9999
Q ss_pred eEEEEeCCCC-CC-CCCcccccCCCCHHHHHHHH
Q 009206 218 PSLVAFPPGC-KS-SDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 218 Ptl~~f~~g~-~~-~~~~~~y~G~~~~~~i~~fi 249 (540)
|++.++.+.. .. ........|..+++.++.++
T Consensus 88 P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 88 PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9999995432 10 11234568999999998875
No 183
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.83 E-value=3.6e-05 Score=60.46 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=51.3
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh-hhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCccc
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~-~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~ 235 (540)
+..|+++||++|+++.+.+++. ...+..+|+++++. ...+++.++ +.++|++++. |. .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~------~~~vP~~~~~--~~-------~ 60 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLG------QRGVPVIVIG--HK-------I 60 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhC------CCcccEEEEC--CE-------E
Confidence 4679999999999988877652 24678888885543 334667777 8899999885 42 2
Q ss_pred ccCCCCHHHHHHHH
Q 009206 236 FEGELSVDAVTDWF 249 (540)
Q Consensus 236 y~G~~~~~~i~~fi 249 (540)
..| .+.+.|..|+
T Consensus 61 ~~g-~~~~~i~~~i 73 (74)
T TIGR02196 61 IVG-FDPEKLDQLL 73 (74)
T ss_pred Eee-CCHHHHHHHh
Confidence 445 4678887775
No 184
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.82 E-value=7.5e-05 Score=71.11 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=57.0
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCC-----------CccceeeeeeEE
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPI-----------GQIFFRRGLPSL 220 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~-----------~~~~~V~~~Ptl 220 (540)
.+++++|.||++||+.|+...|...++.+... ..+..|+.++.......++++++ .+.|.|.++|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 56899999999999999999999999876542 24444443322232333443332 134559999988
Q ss_pred EEeC-CCCCCCCCcccccCCC-CHHHHHHHHH
Q 009206 221 VAFP-PGCKSSDCMTRFEGEL-SVDAVTDWFA 250 (540)
Q Consensus 221 ~~f~-~g~~~~~~~~~y~G~~-~~~~i~~fi~ 250 (540)
+++- +|. ..+.|.. +.+.+-+.+.
T Consensus 151 ~lID~~G~------I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 151 VLLDQDGK------IRAKGLTNTREHLESLLE 176 (189)
T ss_pred EEECCCCe------EEEccCCCCHHHHHHHHH
Confidence 7765 453 3445543 4445555544
No 185
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.82 E-value=0.00014 Score=61.96 Aligned_cols=94 Identities=15% Similarity=0.256 Sum_probs=67.2
Q ss_pred cccchhhhhhhh-hcCCCceEEE-EEeCCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q 009206 262 YTKESMGKNFLA-KTGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKD 339 (540)
Q Consensus 262 i~~~~~~~~fl~-~~~~~~~~vv-~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~ 339 (540)
++....++.|+. ... +.|| +|.+........+..+|..+|+.+.|+... ...+.+.+++. .|+|+++++
T Consensus 5 i~~~~~~e~~~~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~ 75 (102)
T cd03066 5 INSERELQAFENIEDD---IKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATF-----DSKVAKKLGLK-MNEVDFYEP 75 (102)
T ss_pred cCCHHHHHHHhcccCC---eEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEEC-----cHHHHHHcCCC-CCcEEEeCC
Confidence 333344688886 433 4455 555443333456777899998888887764 23577888885 799999988
Q ss_pred CCCceeee-cCCCChhHHHHHHHhhc
Q 009206 340 PGVKPVVY-YGSFNNSRLSEVMEQNK 364 (540)
Q Consensus 340 ~~~~~~~y-~G~~~~~~l~~fi~~~~ 364 (540)
.++.++.| .|..+.+.|.+||..++
T Consensus 76 ~~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 76 FMEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCCcccCCCCCCHHHHHHHHHHhc
Confidence 77777789 88889999999998864
No 186
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.74 E-value=0.00018 Score=61.56 Aligned_cols=88 Identities=14% Similarity=0.260 Sum_probs=62.8
Q ss_pred hhhhhhhhhcCCCceEEE-EEeCCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEE------e
Q 009206 266 SMGKNFLAKTGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL------K 338 (540)
Q Consensus 266 ~~~~~fl~~~~~~~~~vv-~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~f------k 338 (540)
..++.|+... ++.|| +|.+........+..+|..+|+.+.|+... ...+.+++++ .|++++| +
T Consensus 9 ~~l~~f~~~~---~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 9 AEFEKFLSDD---DASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred HHHHHHhccC---CcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEC-----hHHHHHhcCC--CCceEEEechhhhc
Confidence 3367777642 34455 555443334566777899998888887764 2457888998 6889999 4
Q ss_pred CCCCceeeecCCCChhHHHHHHHhh
Q 009206 339 DPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 339 ~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
..++..+.|.|.++.+.|.+||..+
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 4556667799999989999999875
No 187
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.74 E-value=0.00011 Score=63.31 Aligned_cols=92 Identities=10% Similarity=0.121 Sum_probs=60.9
Q ss_pred hhhhhhhcCCCceEEEEE-eC---CCCCCcHHHHHHHHhhccC-ceEEEEEeeccccHHHHH-HcCCCCCCEEEEEeCCC
Q 009206 268 GKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIVFLKDPG 341 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~-~f~V~~~Ptlv~fk~~~ 341 (540)
++........+++.+|.| .+ .|....+.+..++..+++. +.++.|.... +...++. .|+|.++||+++|++++
T Consensus 11 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-~~~~~~~~~~~v~~~Pti~~f~~~~ 89 (109)
T cd02993 11 IEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-EQREFAKEELQLKSFPTILFFPKNS 89 (109)
T ss_pred HHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-cchhhHHhhcCCCcCCEEEEEcCCC
Confidence 344443222234555544 33 3444567788888888753 5666665332 1245665 59999999999999877
Q ss_pred CceeeecCC-CChhHHHHHH
Q 009206 342 VKPVVYYGS-FNNSRLSEVM 360 (540)
Q Consensus 342 ~~~~~y~G~-~~~~~l~~fi 360 (540)
..+..|.|. .+.++|..||
T Consensus 90 ~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 90 RQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCceeccCCCCCHHHHHhhC
Confidence 778889995 7888888885
No 188
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.72 E-value=0.00019 Score=70.52 Aligned_cols=97 Identities=9% Similarity=-0.084 Sum_probs=67.1
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeecc--------chhhhhHHH-HhCCCCcc----------
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLA-ERKPIGQI---------- 211 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~--------~~~~~~~l~-~~~~~~~~---------- 211 (540)
.+++++|.||++||+.|....|.++++.+++++.+ .|..|+|+ +.......+ +++++.=|
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 46899999999999999999999999999998764 78888884 222333443 44432100
Q ss_pred -----ce-------------eeeeeEEEEeC-CCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 212 -----FF-------------RRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 212 -----~~-------------V~~~Ptl~~f~-~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
|. |.+.|+..++- +|.. ...|.|..+.++|...|.+.
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV----v~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV----VERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE----EEEECCCCCHHHHHHHHHHH
Confidence 10 23357766664 4432 56778888888888877665
No 189
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.70 E-value=0.00016 Score=60.97 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=54.4
Q ss_pred CCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHH
Q 009206 291 RASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (540)
Q Consensus 291 ~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi 360 (540)
...+.+..++..+.+.+.|+.+.... ...++++|+|.+.|++++|+++...+..|.|..+.+.|.+|+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 35 NLAPEWKKAAKALKGIVKVGAVDADV--HQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HHhHHHHHHHHHhcCCceEEEEECcc--hHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 34677777888887777777775432 367999999999999999987756677899999999999997
No 190
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.68 E-value=0.00021 Score=68.56 Aligned_cols=57 Identities=7% Similarity=0.109 Sum_probs=45.9
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeecc--------chhhhhHHHHhCCC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLAERKPI 208 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~--------~~~~~~~l~~~~~~ 208 (540)
.++++||.|+|.||+.|.+-.|..+++.+++++.+ .|..|+|+ ........++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~ 103 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI 103 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence 46899999999999999999999999999998764 88888884 22345556777664
No 191
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.68 E-value=7.9e-05 Score=62.78 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=54.3
Q ss_pred CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeecc-chhhhhHHHHhCCCCccceeeeeeEEEEeCCCC
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~-~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~ 227 (540)
+.+++|.||++||++|+.+.|...++++.+.....+..+|.. ..+. +...++.. +..+|++.++.++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~----~~~~p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD---LAAEFGVA----VRSIPTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH---HHHHHhhh----hccCCeEEEEeCcc
Confidence 778999999999999999999999999999876678888886 3443 44554311 66889999888875
No 192
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.64 E-value=0.00039 Score=58.32 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=58.9
Q ss_pred CceEEEEE-eCC---CCCCcHHHHHHHHhhcc--CceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCC
Q 009206 278 HKVKVIFF-SKT---GERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (540)
Q Consensus 278 ~~~~vv~f-~~~---~~~~~~~~~~~A~~~~~--~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~ 351 (540)
+++.+|.| .+. +....+.+..++..+.. .+.++.+.. .....++++|+|.+.|++++|++++. +..|.|..
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~ 89 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA--TAEKDLASRFGVSGFPTIKFFPKGKK-PVDYEGGR 89 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc--cchHHHHHhCCCCcCCEEEEecCCCc-ceeecCCC
Confidence 34555555 332 23345667777777765 355555442 22378999999999999999998766 77899999
Q ss_pred ChhHHHHHHHhh
Q 009206 352 NNSRLSEVMEQN 363 (540)
Q Consensus 352 ~~~~l~~fi~~~ 363 (540)
+.+.|..||+++
T Consensus 90 ~~~~l~~~i~~~ 101 (102)
T TIGR01126 90 DLEAIVEFVNEK 101 (102)
T ss_pred CHHHHHHHHHhc
Confidence 999999999874
No 193
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00011 Score=61.46 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=44.6
Q ss_pred cccCccCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCCh
Q 009206 41 DALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDP 90 (540)
Q Consensus 41 ~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~ 90 (540)
.||||+++++.+.||+|+|+.....|||+. |+.---.+||+|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHhcc
Confidence 399999999999999999999999999997 6777788999999999754
No 194
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.60 E-value=2.9e-05 Score=68.82 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=44.5
Q ss_pred Cccccc----cCCCcEEEEEEecCCCCccCChHHH---HHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeee
Q 009206 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (540)
Q Consensus 145 ~F~~~v----~~~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~ 217 (540)
+|++.+ .++++++|.||++||++|+.|.... .++++.+.. .+..|+...+.....+.. . ..++
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~-~-------g~~v 80 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSP-D-------GQYV 80 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCc-c-------Cccc
Confidence 566655 4799999999999999999998753 234444433 244333331111011111 1 3589
Q ss_pred eEEEEeCCCC
Q 009206 218 PSLVAFPPGC 227 (540)
Q Consensus 218 Ptl~~f~~g~ 227 (540)
||++++.+..
T Consensus 81 PtivFld~~g 90 (130)
T cd02960 81 PRIMFVDPSL 90 (130)
T ss_pred CeEEEECCCC
Confidence 9999996543
No 195
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.57 E-value=0.0002 Score=60.83 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=57.5
Q ss_pred CceEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 009206 278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (540)
Q Consensus 278 ~~~~vv~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~ 353 (540)
+++.+|.| .+ .|....|.+..++..+.+ +.++.+...+ ....++++|+|.++||+++|+++ ....|.|..+.
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~ 93 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTL 93 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCH
Confidence 45556655 32 345567888888888864 5555553220 24789999999999999999876 56679999999
Q ss_pred hHHHHHH
Q 009206 354 SRLSEVM 360 (540)
Q Consensus 354 ~~l~~fi 360 (540)
+.|.+||
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9999885
No 196
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.56 E-value=0.00093 Score=59.41 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=69.0
Q ss_pred hhhhhhhcCCCceEEEEEeCCCCC------CcHHHHHHHHhhcc-CceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q 009206 268 GKNFLAKTGPHKVKVIFFSKTGER------ASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f~~~~~~------~~~~~~~~A~~~~~-~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~ 340 (540)
++.|+...+ ..|||+.+...+ ....+..++.+|.+ ++.|+.|+... .+.++.+|||.+.||+++|+++
T Consensus 27 ~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 27 LDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred HHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--CHHHHHHcCCccCCEEEEEECC
Confidence 688887554 567888543222 23456778998863 47788877543 4789999999999999999976
Q ss_pred CCceeeecCCCChhHHHHHHHhhccCCCc
Q 009206 341 GVKPVVYYGSFNNSRLSEVMEQNKLQELP 369 (540)
Q Consensus 341 ~~~~~~y~G~~~~~~l~~fi~~~~~~~lp 369 (540)
.. .....|..+.+.+.+||++..-.-.|
T Consensus 102 k~-v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 102 NY-RGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred EE-EEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 43 33467888999999999876544333
No 197
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.54 E-value=0.00031 Score=75.41 Aligned_cols=100 Identities=10% Similarity=0.148 Sum_probs=68.4
Q ss_pred cccchhhhhhhhhcCCCceEEE-EEe---CCCCCCcHHHHHHHHhhccC-ceEEEEEeeccccHHHHHHcCCCCCCEEEE
Q 009206 262 YTKESMGKNFLAKTGPHKVKVI-FFS---KTGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (540)
Q Consensus 262 i~~~~~~~~fl~~~~~~~~~vv-~f~---~~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~ 336 (540)
++..+ +++.+.....+++.+| |+. ..|....|.+..+|..|.+. +.|+.|+.........+++|+|.++|||++
T Consensus 356 L~~~n-f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 356 LSRPG-IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred CCHHH-HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 44444 5666542223445555 443 33455678888899888654 667777643322233457899999999999
Q ss_pred EeCCCCceeeec-CCCChhHHHHHHHh
Q 009206 337 LKDPGVKPVVYY-GSFNNSRLSEVMEQ 362 (540)
Q Consensus 337 fk~~~~~~~~y~-G~~~~~~l~~fi~~ 362 (540)
|+++...++.|. |..+.+.|..||+.
T Consensus 435 Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 435 FPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred EECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999877788897 57999999999975
No 198
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.52 E-value=0.00014 Score=58.52 Aligned_cols=73 Identities=23% Similarity=0.397 Sum_probs=53.2
Q ss_pred EEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCccccc
Q 009206 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (540)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~ 237 (540)
|++++++|++|..+...+++++..+. ..+-.++..+.+ .+ .++| |.++|++++ +|+ ..|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~---~~-~~yg------v~~vPalvI--ng~------~~~~ 62 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFE---EI-EKYG------VMSVPALVI--NGK------VVFV 62 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHH---HH-HHTT-------SSSSEEEE--TTE------EEEE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHH---HH-HHcC------CCCCCEEEE--CCE------EEEE
Confidence 56689999999999999999999884 445555554333 35 8888 999999944 663 5688
Q ss_pred C-CCCHHHHHHHHH
Q 009206 238 G-ELSVDAVTDWFA 250 (540)
Q Consensus 238 G-~~~~~~i~~fi~ 250 (540)
| ..+.+.|..|+.
T Consensus 63 G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 63 GRVPSKEELKELLE 76 (76)
T ss_dssp SS--HHHHHHHHHH
T ss_pred ecCCCHHHHHHHhC
Confidence 8 778888888863
No 199
>PLN02412 probable glutathione peroxidase
Probab=97.52 E-value=0.00052 Score=63.95 Aligned_cols=43 Identities=9% Similarity=-0.072 Sum_probs=38.2
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeecc
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG 194 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~ 194 (540)
.+++++|.||++||+.|.+-.|.+.++.+++++.+ .|..|+|+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 35899999999999999999999999999998764 78888875
No 200
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.52 E-value=0.00051 Score=57.30 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=57.0
Q ss_pred ceEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChh
Q 009206 279 KVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (540)
Q Consensus 279 ~~~vv~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~ 354 (540)
++.+|.| .+ .+....+.+..++..+.+.+.++.++... ...++++|+|.+.|++++|+++ .....+.|..+.+
T Consensus 13 ~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~~g~~~~~ 89 (96)
T cd02956 13 VPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAAG-QPVDGFQGAQPEE 89 (96)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeCC-EEeeeecCCCCHH
Confidence 4555544 33 23445677777888887666666665433 3689999999999999999854 3334588988889
Q ss_pred HHHHHHH
Q 009206 355 RLSEVME 361 (540)
Q Consensus 355 ~l~~fi~ 361 (540)
.|.+|++
T Consensus 90 ~l~~~l~ 96 (96)
T cd02956 90 QLRQMLD 96 (96)
T ss_pred HHHHHhC
Confidence 9998873
No 201
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.50 E-value=0.00078 Score=66.46 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=81.1
Q ss_pred hhhhhhhcCCCceEEEEE---eCCCCCCcHHHHHHHHhhccCceEEEEEeecccc-HHHHHHcCCCCCCEEEEEeCCCCc
Q 009206 268 GKNFLAKTGPHKVKVIFF---SKTGERASPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVK 343 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f---~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~-~~l~~~f~V~~~Ptlv~fk~~~~~ 343 (540)
.++|+....+..|.|-|+ +.+|++..|.|..+...+++--.-..|..-+|+. +.++++|||.++|||.+||+ ..
T Consensus 34 ddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~ 111 (468)
T KOG4277|consen 34 DDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DH 111 (468)
T ss_pred hHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--Ce
Confidence 467777777788988888 4578889999988666655433334555556665 78999999999999999985 34
Q ss_pred eeeecCCCChhHHHHHHHhhccCCCccccccc
Q 009206 344 PVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT 375 (540)
Q Consensus 344 ~~~y~G~~~~~~l~~fi~~~~~~~lp~l~~~~ 375 (540)
...|-|.+++++|.+|...-.-+.+-.+.+..
T Consensus 112 a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ 143 (468)
T KOG4277|consen 112 AIDYRGGREKDAIIEFAHRCAAAIIEPINENQ 143 (468)
T ss_pred eeecCCCccHHHHHHHHHhcccceeeecChhH
Confidence 56799999999999999887777666666533
No 202
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.46 E-value=0.00042 Score=59.96 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=73.2
Q ss_pred eEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHH-Hhcc--cceeeeeccc--hhhhhHHHHhCCCCccc
Q 009206 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEGI--ANTGMVELGD--IRLATHLAERKPIGQIF 212 (540)
Q Consensus 138 V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~-l~~~--~~v~~Vdc~~--~~~~~~l~~~~~~~~~~ 212 (540)
...|+.-+|+.+|...+.+||.|=.-.- --.-..+|.++|++ .+.. .-+|.|...+ ++....|+++|++.
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayP--yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~--- 80 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAYP--YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID--- 80 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S---
T ss_pred eeeccceehhheeccCceEEEEEeccCC--CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC---
Confidence 3779999999999999999999975431 12335688899944 3322 2566666552 22334599999944
Q ss_pred eeeeeeEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 009206 213 FRRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g~~~~~~~~~y--~G~~~~~~i~~fi~~~ 252 (540)
-..||.+++|..+.. .+..| .|+.++++|..|+.++
T Consensus 81 -ke~fPv~~LF~~~~~---~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 81 -KEDFPVIYLFVGDKE---EPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -CCC-SEEEEEESSTT---SEEEE-TCS-S-HHHHHHHHHHT
T ss_pred -cccCCEEEEecCCCC---CCccCCccCCccHHHHHHHHHhC
Confidence 368999999996543 47778 8999999999999876
No 203
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.44 E-value=0.00056 Score=57.66 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=56.8
Q ss_pred ceEEEEE-eC---CCCCCcHHHHHHHHhhcc--CceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCC
Q 009206 279 KVKVIFF-SK---TGERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (540)
Q Consensus 279 ~~~vv~f-~~---~~~~~~~~~~~~A~~~~~--~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~ 352 (540)
++.++.| .+ .+....+.+..++..+.. .+.++.+..... ...++++|+|.+.|++++|++++.....|.|..+
T Consensus 19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~ 97 (105)
T cd02998 19 KDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRD 97 (105)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeCCCCCccccCCccC
Confidence 3555555 33 233356777888877752 344555543220 4689999999999999999987666777899999
Q ss_pred hhHHHHHH
Q 009206 353 NSRLSEVM 360 (540)
Q Consensus 353 ~~~l~~fi 360 (540)
.+.|.+||
T Consensus 98 ~~~l~~~i 105 (105)
T cd02998 98 LEDLVKFV 105 (105)
T ss_pred HHHHHhhC
Confidence 99998885
No 204
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.42 E-value=0.00042 Score=58.03 Aligned_cols=87 Identities=13% Similarity=0.209 Sum_probs=67.7
Q ss_pred ccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCC
Q 009206 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (540)
Q Consensus 146 F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~ 225 (540)
.+.++....+++|-|+.++|+ .....|.++|..+.....+|.+.-. . ++++++ +. -|++++|++
T Consensus 10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~---~---~~~~~~------~~-~~~i~l~~~ 73 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK---E---VAKKLK------VK-PGSVVLFKP 73 (97)
T ss_pred HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH---H---HHHHcC------CC-CCceEEeCC
Confidence 444568899999999999887 5678999999999877788877733 2 556665 54 499999987
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHH
Q 009206 226 GCKSSDCMTRFEGELSVDAVTDWFAT 251 (540)
Q Consensus 226 g~~~~~~~~~y~G~~~~~~i~~fi~~ 251 (540)
... ....|.|..+.++|.+|+..
T Consensus 74 ~~~---~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 74 FEE---EPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccc---CCccCCCCCCHHHHHHHHHh
Confidence 532 24779999999999999864
No 205
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.41 E-value=0.0035 Score=69.73 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=111.8
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeC-CCCCCC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP-PGCKSS 230 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~-~g~~~~ 230 (540)
.+.+.|+.|..+.|..|..+....++++ +|.+...+-..|..++.. ++++++ |...|++.++. +|..
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~---~~~~~~------v~~~P~~~i~~~~~~~-- 432 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPE---SETLPK------ITKLPTVALLDDDGNY-- 432 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchh---hHhhcC------CCcCCEEEEEeCCCcc--
Confidence 3455788888889999999888888887 555666676777765544 778888 88999999995 4432
Q ss_pred CCcccccCCCCHHHHHHHHHHhhh-cCCcccccccchhhhhhhhhcCCCceEEE-EEeCCC-CCCc--HHHHHHHHhhcc
Q 009206 231 DCMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG-ERAS--PFVRQISRNYWA 305 (540)
Q Consensus 231 ~~~~~y~G~~~~~~i~~fi~~~v~-~lp~~~~i~~~~~~~~fl~~~~~~~~~vv-~f~~~~-~~~~--~~~~~~A~~~~~ 305 (540)
....|.|--.=..+..|+...+. +.+... ++ ++..+ .+...+ ....+- |++..| .|+. ..+..+|... .
T Consensus 433 -~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~-l~-~~~~~-~i~~~~-~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~ 506 (555)
T TIGR03143 433 -TGLKFHGVPSGHELNSFILALYNAAGPGQP-LG-EELLE-KIKKIT-KPVNIKIGVSLSCTLCPDVVLAAQRIASLN-P 506 (555)
T ss_pred -cceEEEecCccHhHHHHHHHHHHhcCCCCC-CC-HHHHH-HHHhcC-CCeEEEEEECCCCCCcHHHHHHHHHHHHhC-C
Confidence 24788887666666677655421 112221 22 22122 233321 123333 344433 3332 2334455432 2
Q ss_pred CceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHH
Q 009206 306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (540)
Q Consensus 306 ~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi 360 (540)
.+..-.+.. .+.++++++|+|.+.|++++ +++ ..+.|..+.++|.+|+
T Consensus 507 ~i~~~~i~~--~~~~~~~~~~~v~~vP~~~i---~~~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 507 NVEAEMIDV--SHFPDLKDEYGIMSVPAIVV---DDQ--QVYFGKKTIEEMLELI 554 (555)
T ss_pred CceEEEEEC--cccHHHHHhCCceecCEEEE---CCE--EEEeeCCCHHHHHHhh
Confidence 333333332 23378999999999999888 332 3577988888888775
No 206
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.41 E-value=0.0019 Score=55.77 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=59.1
Q ss_pred hhhhhhhcCCCceEEEEEeCC------CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC
Q 009206 268 GKNFLAKTGPHKVKVIFFSKT------GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f~~~------~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
++++++. +.++|++|... +....|.+..+|.+|.+.+.|+.+...+ .+.++.+|+|.+.||+++|+++.
T Consensus 20 ~~~~~~~---~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 20 LDDWLAA---GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred HHHHHhC---CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHHHHHHcCCCcCCEEEEEECCE
Confidence 4566643 33667777433 2234678888999997777777776443 46899999999999999999753
Q ss_pred CceeeecCCCChhHHH
Q 009206 342 VKPVVYYGSFNNSRLS 357 (540)
Q Consensus 342 ~~~~~y~G~~~~~~l~ 357 (540)
......|..+.+++.
T Consensus 95 -~v~~~~G~~~~~e~~ 109 (111)
T cd02965 95 -YVGVLAGIRDWDEYV 109 (111)
T ss_pred -EEEEEeCccCHHHHh
Confidence 333457877776654
No 207
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.39 E-value=0.00017 Score=57.41 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=39.5
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHh--CCCCccceeeeeeEEEEeCCCC
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAER--KPIGQIFFRRGLPSLVAFPPGC 227 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~--~~~~~~~~V~~~Ptl~~f~~g~ 227 (540)
++.|+++||++|+++.+.+++... .+-.+|.++++.......+ ++ +.++|+| ++.+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~~~~~~~~~~~~~------~~~vP~i-~~~~g~ 61 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDEGAADRVVSVNNG------NMTVPTV-KFADGS 61 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCHhHHHHHHHHhCC------CceeCEE-EECCCe
Confidence 578999999999999988866532 3456787755442222222 25 8899998 466663
No 208
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00067 Score=61.07 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=62.5
Q ss_pred eEEE-EE---eCCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 009206 280 VKVI-FF---SKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (540)
Q Consensus 280 ~~vv-~f---~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~ 355 (540)
|++| |+ +.-|+...|.+..++.+|.+.++|+.|++.+ ..+++.+|+|+..||+++|+++... ..+-|..+.+.
T Consensus 63 PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~avPtvlvfknGe~~-d~~vG~~~~~~ 139 (150)
T KOG0910|consen 63 PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEISAVPTVLVFKNGEKV-DRFVGAVPKEQ 139 (150)
T ss_pred CEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhcceeeeeEEEEEECCEEe-eeecccCCHHH
Confidence 5455 54 2334557899999999998888888887543 3679999999999999999976543 34678888889
Q ss_pred HHHHHHhh
Q 009206 356 LSEVMEQN 363 (540)
Q Consensus 356 l~~fi~~~ 363 (540)
|..+|++.
T Consensus 140 l~~~i~k~ 147 (150)
T KOG0910|consen 140 LRSLIKKF 147 (150)
T ss_pred HHHHHHHH
Confidence 99998863
No 209
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.37 E-value=0.00098 Score=57.62 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=58.0
Q ss_pred CceEEEEE-eC---CCCCCcHHHHHHHHhhcc-CceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCC
Q 009206 278 HKVKVIFF-SK---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (540)
Q Consensus 278 ~~~~vv~f-~~---~~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~ 352 (540)
+++.+|.| .+ .|....|.+..++..+.+ .+.++.|+... ...++++++|.+.||+++|+++ .....+.|..+
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--~~~l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~~ 100 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--ERRLARKLGAHSVPAIVGIING-QVTFYHDSSFT 100 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--cHHHHHHcCCccCCEEEEEECC-EEEEEecCCCC
Confidence 34556655 33 344456788888888864 36666665322 3679999999999999999865 34444588888
Q ss_pred hhHHHHHHHh
Q 009206 353 NSRLSEVMEQ 362 (540)
Q Consensus 353 ~~~l~~fi~~ 362 (540)
.+.|.+||.+
T Consensus 101 ~~~l~~~i~~ 110 (111)
T cd02963 101 KQHVVDFVRK 110 (111)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 210
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.37 E-value=0.0002 Score=64.74 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=55.0
Q ss_pred CCCcEEEEEEec-CCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCCC------------Cccceee--
Q 009206 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI------------GQIFFRR-- 215 (540)
Q Consensus 152 ~~~~~lV~FYap-wC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~~------------~~~~~V~-- 215 (540)
.+++++|.||+. ||+.|+.-.|...++++.++.. +.+..|+.+.+......++++++ .+.|.+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 578899999999 9999999999999998887665 46766776655444455555442 2244477
Q ss_pred -------eeeEEEEeCCC
Q 009206 216 -------GLPSLVAFPPG 226 (540)
Q Consensus 216 -------~~Ptl~~f~~g 226 (540)
++|+++++-..
T Consensus 107 ~~~~~~~~~P~~~lId~~ 124 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKD 124 (146)
T ss_dssp CCTTTTSSSSEEEEEETT
T ss_pred cccccCCeecEEEEEECC
Confidence 89998776543
No 211
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.37 E-value=0.00059 Score=62.42 Aligned_cols=42 Identities=7% Similarity=-0.141 Sum_probs=36.1
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeecc
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG 194 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~ 194 (540)
.+++++|.|++.||+ |..-.|.++++.+++++.. .|..|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 368999999999999 9999999999999997553 77777764
No 212
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.36 E-value=0.00077 Score=56.67 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=54.8
Q ss_pred eEEEEEeC---CCCCCcHHHHHHHHhhcc---CceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 009206 280 VKVIFFSK---TGERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (540)
Q Consensus 280 ~~vv~f~~---~~~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~ 353 (540)
+.+.|+.+ .+....|.+..++..+.+ .+.++.++.. ....++++|+|.+.|++++|+++. ....|.|..+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~ 95 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT--QHRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTRDL 95 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC--CChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCCCH
Confidence 44445443 234456778888888865 4556655432 236799999999999999997654 45568999998
Q ss_pred hHHHHHH
Q 009206 354 SRLSEVM 360 (540)
Q Consensus 354 ~~l~~fi 360 (540)
+.|.+||
T Consensus 96 ~~l~~~i 102 (102)
T cd03005 96 DSLKEFV 102 (102)
T ss_pred HHHHhhC
Confidence 8888875
No 213
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00055 Score=68.15 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=70.3
Q ss_pred cccchhhhhhhhhcCCCceEEEEE-e---CCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEE
Q 009206 262 YTKESMGKNFLAKTGPHKVKVIFF-S---KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (540)
Q Consensus 262 i~~~~~~~~fl~~~~~~~~~vv~f-~---~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~f 337 (540)
+|..++....+... ...|++|.| . ..|....|.+..++.+|++...++.|+.. ..+.++..|||.+.|++++|
T Consensus 28 vT~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D--~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 28 VTEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD--AEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred chHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC--cchhHHHHhCcCcCCeEEEe
Confidence 34444333344333 334556655 3 34445678889999999999988888632 23789999999999999999
Q ss_pred eCCCCcee-eecCCCChhHHHHHHHhhc
Q 009206 338 KDPGVKPV-VYYGSFNNSRLSEVMEQNK 364 (540)
Q Consensus 338 k~~~~~~~-~y~G~~~~~~l~~fi~~~~ 364 (540)
+++. |+ -|.|....+.|..|+....
T Consensus 105 ~dGq--pVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 105 KDGQ--PVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred eCCc--CccccCCCCcHHHHHHHHHHhc
Confidence 9764 44 3889888889999998753
No 214
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.35 E-value=0.0014 Score=60.07 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=37.3
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeec
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVEL 193 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc 193 (540)
.+++++|.|+++||+.|++-.|.+.++.++++... .|..|+|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 46789999999999999999999999999998654 7888887
No 215
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.29 E-value=0.0012 Score=55.60 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=58.2
Q ss_pred hhhhhhhcCCCceEEEEE-eCC---CCCCcHHHHHHHHhhc--cCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC
Q 009206 268 GKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f-~~~---~~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
++..++.. ++.+|.| .+- +....+.+..++..+. ..+.++.+.........++++++|.++|++++|+++.
T Consensus 10 ~~~~~~~~---~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 10 FRKFLKKE---KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred HHHHHhhC---CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 34455432 2445544 432 3334566667777665 3455666654433357899999999999999998653
Q ss_pred CceeeecCCCChhHHHHHH
Q 009206 342 VKPVVYYGSFNNSRLSEVM 360 (540)
Q Consensus 342 ~~~~~y~G~~~~~~l~~fi 360 (540)
....|.|..+.+.|.+||
T Consensus 87 -~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 87 -FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred -eeEEeCCCCCHHHHHhhC
Confidence 455688988888888874
No 216
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.28 E-value=0.00092 Score=56.78 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=47.4
Q ss_pred HHHHhhccCceEEEEEeeccc--cHHHHHHcCCCCCCEEEEEeC-CCCceeeecCCCChhHHHHHHH
Q 009206 298 QISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVME 361 (540)
Q Consensus 298 ~~A~~~~~~~~f~~v~~~~~~--~~~l~~~f~V~~~Ptlv~fk~-~~~~~~~y~G~~~~~~l~~fi~ 361 (540)
.++..+.+.+.++.+++.... ...++++|+|.+.|++++|++ ++..+..+.|..+.+.|.++|+
T Consensus 38 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 38 EVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 345555556677777654322 367999999999999999986 5666667889999998888763
No 217
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.27 E-value=0.0011 Score=61.70 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=64.8
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeeccc--------hhhhhHHHHhCCC------------Cc
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAERKPI------------GQ 210 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~--------~~~~~~l~~~~~~------------~~ 210 (540)
.++++||.||++||+.|.+..|...++..++++. +.+..|.++. ........+++++ .+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 5689999999999999999999999999999743 4777887753 1122222333322 22
Q ss_pred cceeeeeeEEEEeCCCCCCCCCccccc-----------CCCCHHHHHHHHHHh
Q 009206 211 IFFRRGLPSLVAFPPGCKSSDCMTRFE-----------GELSVDAVTDWFATA 252 (540)
Q Consensus 211 ~~~V~~~Ptl~~f~~g~~~~~~~~~y~-----------G~~~~~~i~~fi~~~ 252 (540)
.|.|.+.|+++++-++.+ ..|. +..+.+.+.+-|...
T Consensus 104 ~~~v~~~P~~~lid~~G~-----v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 104 AYGAACTPDFFLFDPDGK-----LVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HcCCCcCCcEEEECCCCe-----EEEeecccCCcccccccccHHHHHHHHHHH
Confidence 445889999999964432 2333 223566777777665
No 218
>PLN02309 5'-adenylylsulfate reductase
Probab=97.27 E-value=0.00094 Score=71.68 Aligned_cols=99 Identities=9% Similarity=0.155 Sum_probs=67.2
Q ss_pred cccchhhhhhhhhcCCCceEEE-EEe---CCCCCCcHHHHHHHHhhccC-ceEEEEEeeccccHHHHH-HcCCCCCCEEE
Q 009206 262 YTKESMGKNFLAKTGPHKVKVI-FFS---KTGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV 335 (540)
Q Consensus 262 i~~~~~~~~fl~~~~~~~~~vv-~f~---~~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~-~f~V~~~Ptlv 335 (540)
++.++ +++.+.....+++.+| |+. ..|....|.+..+|..|... +.|+.++... ....++. +|+|.++|||+
T Consensus 350 Lt~~n-fe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-~~~~la~~~~~I~~~PTil 427 (457)
T PLN02309 350 LSRAG-IENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-DQKEFAKQELQLGSFPTIL 427 (457)
T ss_pred CCHHH-HHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-cchHHHHhhCCCceeeEEE
Confidence 34443 4555532223445455 443 34455677888888887543 6666665431 2356775 69999999999
Q ss_pred EEeCCCCceeeecC-CCChhHHHHHHHh
Q 009206 336 FLKDPGVKPVVYYG-SFNNSRLSEVMEQ 362 (540)
Q Consensus 336 ~fk~~~~~~~~y~G-~~~~~~l~~fi~~ 362 (540)
+|+++...++.|.| ..+.+.|..||+.
T Consensus 428 ~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 428 LFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred EEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 99988888889975 6899999999986
No 219
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.21 E-value=0.0011 Score=55.83 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=55.6
Q ss_pred ceEEE-EEeC---CCCCCcHHHHHHHHhhccC--ceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC-CceeeecCCC
Q 009206 279 KVKVI-FFSK---TGERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VKPVVYYGSF 351 (540)
Q Consensus 279 ~~~vv-~f~~---~~~~~~~~~~~~A~~~~~~--~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~-~~~~~y~G~~ 351 (540)
++.+| |+.+ .+....+.+..++..+.+. +.|+.++ ++..+++..+++.++|++++|+++. ..+..|.|..
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id---~~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~ 95 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMD---ATANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDR 95 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEe---CcchhhhhhccCCCCCEEEEEcCCCcCCceEccCCc
Confidence 34445 4433 2344567788888877653 4455554 4344688899999999999999776 4566789999
Q ss_pred ChhHHHHHH
Q 009206 352 NNSRLSEVM 360 (540)
Q Consensus 352 ~~~~l~~fi 360 (540)
+...|.+||
T Consensus 96 ~~~~l~~fi 104 (104)
T cd02995 96 TLEDLIKFI 104 (104)
T ss_pred CHHHHHhhC
Confidence 999998885
No 220
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.21 E-value=0.0012 Score=54.57 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHhh--ccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHH
Q 009206 291 RASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (540)
Q Consensus 291 ~~~~~~~~~A~~~--~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi 360 (540)
...+.+..++..+ ...+.|+.+.... ...++++|+|.+.|++++|++++.....|.|..+.++|.+|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 32 ALAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred hhhHHHHHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 3456677777777 4566666665322 368999999999999999987755666788888888887774
No 221
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.19 E-value=0.0017 Score=54.66 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=56.6
Q ss_pred eEEEEEeC---CCCCCcHHHHHHHHhhcc-CceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 009206 280 VKVIFFSK---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (540)
Q Consensus 280 ~~vv~f~~---~~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~ 355 (540)
++|.|+.+ .|....|.+..++..+.. .+.++.++.. +...++++|+|.++||+++|+++. ...|.|..+.+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~G~~~~~~ 94 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT--QEPGLSGRFFVTALPTIYHAKDGV--FRRYQGPRDKED 94 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc--CCHhHHHHcCCcccCEEEEeCCCC--EEEecCCCCHHH
Confidence 55555543 344457778778776543 3566666533 236799999999999999998754 356899999999
Q ss_pred HHHHHHh
Q 009206 356 LSEVMEQ 362 (540)
Q Consensus 356 l~~fi~~ 362 (540)
|.+|+++
T Consensus 95 l~~~i~~ 101 (101)
T cd02994 95 LISFIEE 101 (101)
T ss_pred HHHHHhC
Confidence 9999863
No 222
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.17 E-value=0.0027 Score=54.59 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=62.5
Q ss_pred cchhhhhhhhhcCCCceEEE-EEeCCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEE-----
Q 009206 264 KESMGKNFLAKTGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL----- 337 (540)
Q Consensus 264 ~~~~~~~fl~~~~~~~~~vv-~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~f----- 337 (540)
+.+.++.|+.... .+.|| +|.+........+..+|..+|+.+.|+.+. ...+..++++. .|.+++|
T Consensus 7 s~~ele~f~~~~~--~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~-----~~~~~~~~~~~-~~~vvl~rp~~~ 78 (107)
T cd03068 7 TLKQVQEFLRDGD--DVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTF-----DSEIFKSLKVS-PGQLVVFQPEKF 78 (107)
T ss_pred CHHHHHHHHhcCC--CEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEC-----hHHHHHhcCCC-CCceEEECcHHH
Confidence 3333677775430 24455 555433333456677899998888887764 23577888885 6778888
Q ss_pred -eCCCCceeeecCC-CChhH-HHHHHHhh
Q 009206 338 -KDPGVKPVVYYGS-FNNSR-LSEVMEQN 363 (540)
Q Consensus 338 -k~~~~~~~~y~G~-~~~~~-l~~fi~~~ 363 (540)
+..+++..+|.|. .+.++ |.+||..|
T Consensus 79 ~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 79 QSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred hhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 4567778889888 67766 99999865
No 223
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.15 E-value=0.0028 Score=52.74 Aligned_cols=69 Identities=14% Similarity=0.312 Sum_probs=51.8
Q ss_pred CcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhh
Q 009206 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
..+.+..++..+.+.+.|+.+.... ...++++|+|...|++++|+++. ....+.|..+.+.|.+|++++
T Consensus 32 ~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 32 IAPILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFKNGK-EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred hCHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCcCCEEEEEeCCc-EeeeecCCCCHHHHHHHHHhh
Confidence 4566777777776667777776432 35799999999999999997543 333467888889999999763
No 224
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.13 E-value=0.0022 Score=58.06 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=60.9
Q ss_pred CceEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 009206 278 HKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (540)
Q Consensus 278 ~~~~vv~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~ 353 (540)
+++.||.|. + .|....|.+..++..|.+...|..|.........++.+|+|.+.|++++|...+.....+.|..+.
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~ 99 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPK 99 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCH
Confidence 456666553 2 234456777778888876677888765433335789999999999999996555444456888888
Q ss_pred hHHHHHHHhh
Q 009206 354 SRLSEVMEQN 363 (540)
Q Consensus 354 ~~l~~fi~~~ 363 (540)
+.|.++|...
T Consensus 100 ~~l~~~l~~l 109 (142)
T cd02950 100 QVLAQNLDAL 109 (142)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 225
>PRK09381 trxA thioredoxin; Provisional
Probab=97.13 E-value=0.0026 Score=54.38 Aligned_cols=82 Identities=13% Similarity=0.285 Sum_probs=59.2
Q ss_pred ceEEE-EEeCC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChh
Q 009206 279 KVKVI-FFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (540)
Q Consensus 279 ~~~vv-~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~ 354 (540)
++.+| |+.+. |....|.+..++..+.+.+.++.++... ...++++|+|.+.|++++|+++. ....+.|..+.+
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~ 98 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSKG 98 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCCcCCEEEEEeCCe-EEEEecCCCCHH
Confidence 34455 44432 3345678888888887777777776433 36789999999999999997543 333568888889
Q ss_pred HHHHHHHhh
Q 009206 355 RLSEVMEQN 363 (540)
Q Consensus 355 ~l~~fi~~~ 363 (540)
.|..||..+
T Consensus 99 ~l~~~i~~~ 107 (109)
T PRK09381 99 QLKEFLDAN 107 (109)
T ss_pred HHHHHHHHh
Confidence 999998764
No 226
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.11 E-value=0.0011 Score=64.49 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccch--------hhhhHHHHhCCCCccceeeeeeEEEEe
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~--------~~~~~l~~~~~~~~~~~V~~~Ptl~~f 223 (540)
.++.-|+.||.+.|+.|++++|+...+++..+ ..|-.|+.+.. .....++++++ |..+|++++.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~------v~~~Pal~Lv 190 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLG------VKVTPALFLV 190 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcC------CCcCCEEEEE
Confidence 46778999999999999999999999999883 24555555521 11233778888 9999999999
Q ss_pred CCCCCCCCCcccccCCCCHHHHHH
Q 009206 224 PPGCKSSDCMTRFEGELSVDAVTD 247 (540)
Q Consensus 224 ~~g~~~~~~~~~y~G~~~~~~i~~ 247 (540)
..+... ....-.|..+.+.|.+
T Consensus 191 ~~~~~~--~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 191 NPNTKK--WYPVSQGFMSLDELED 212 (215)
T ss_pred ECCCCe--EEEEeeecCCHHHHHH
Confidence 876531 1122258888888875
No 227
>PHA02278 thioredoxin-like protein
Probab=97.05 E-value=0.0031 Score=53.88 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=54.6
Q ss_pred ceEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEeeccc--cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCC
Q 009206 279 KVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (540)
Q Consensus 279 ~~~vv~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~--~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~ 352 (540)
++.+|.| .+ .|....|.+..++..+.....|..++..... ...++++|+|.+.||+++|+++. ......|..+
T Consensus 15 ~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~~ 93 (103)
T PHA02278 15 KDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQVT 93 (103)
T ss_pred CcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE-EEEEEeCCCC
Confidence 4556644 33 3445678888888765445567777754321 25799999999999999999753 3334678777
Q ss_pred hhHHHHH
Q 009206 353 NSRLSEV 359 (540)
Q Consensus 353 ~~~l~~f 359 (540)
.+.|.++
T Consensus 94 ~~~l~~~ 100 (103)
T PHA02278 94 PMQLQEL 100 (103)
T ss_pred HHHHHhh
Confidence 7777665
No 228
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.04 E-value=0.0015 Score=55.09 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=57.7
Q ss_pred ceEEEEEeC-C---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCC--CCCEEEEEeCCCCceeee-cCCC
Q 009206 279 KVKVIFFSK-T---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY-YGSF 351 (540)
Q Consensus 279 ~~~vv~f~~-~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~--~~Ptlv~fk~~~~~~~~y-~G~~ 351 (540)
++.+++|.+ . ++...+.++.+|.+|++.+.|+.++..+ ...+++.|||. +.|++++++........+ .|.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 355665642 2 2234567788999998888888886443 35799999999 899999999842222223 3445
Q ss_pred ChhHHHHHHHh
Q 009206 352 NNSRLSEVMEQ 362 (540)
Q Consensus 352 ~~~~l~~fi~~ 362 (540)
+.+.|.+|+.+
T Consensus 91 ~~~~l~~fi~~ 101 (103)
T cd02982 91 TAESLEEFVED 101 (103)
T ss_pred CHHHHHHHHHh
Confidence 88999999975
No 229
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.00 E-value=0.00063 Score=68.04 Aligned_cols=105 Identities=14% Similarity=0.227 Sum_probs=67.9
Q ss_pred eeEEeCC-CCcccccc---CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccc
Q 009206 137 AFNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (540)
Q Consensus 137 ~V~~lt~-~~F~~~v~---~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (540)
.|.+|+. +.|-+.|. ....++|.||.|.+..|..|...+..+|..+.. ++|.+|... ... ++.+|+
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~---~~~-~~~~f~----- 195 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRAS---KCP-ASENFP----- 195 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEEC---GCC-TTTTS------
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehh---ccC-cccCCc-----
Confidence 4677865 67877773 345789999999999999999999999998754 588888876 211 456677
Q ss_pred eeeeeeEEEEeCCCCCC--CCCccccc-CCCCHHHHHHHHHHh
Q 009206 213 FRRGLPSLVAFPPGCKS--SDCMTRFE-GELSVDAVTDWFATA 252 (540)
Q Consensus 213 ~V~~~Ptl~~f~~g~~~--~~~~~~y~-G~~~~~~i~~fi~~~ 252 (540)
+..+|||++|++|..- .......- .+.+..+|-.|+.+.
T Consensus 196 -~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 196 -DKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred -ccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 8899999999998531 00011111 245666777776654
No 230
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.99 E-value=0.0009 Score=58.38 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=53.6
Q ss_pred CCCcEEEEEEec-CCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCCC------------Cccceee--
Q 009206 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI------------GQIFFRR-- 215 (540)
Q Consensus 152 ~~~~~lV~FYap-wC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~~------------~~~~~V~-- 215 (540)
.+++++|.||+. ||++|+...+.+.++..+++.. +.+..|..+.........++++. .+.|.+.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 568999999999 9999999999999999999864 37777777754443444544432 1233366
Q ss_pred ----eeeEEEEeCCC
Q 009206 216 ----GLPSLVAFPPG 226 (540)
Q Consensus 216 ----~~Ptl~~f~~g 226 (540)
.+|++.++-++
T Consensus 104 ~~~~~~p~~~lid~~ 118 (124)
T PF00578_consen 104 KDTLALPAVFLIDPD 118 (124)
T ss_dssp TTSEESEEEEEEETT
T ss_pred cCCceEeEEEEECCC
Confidence 77777766544
No 231
>PRK10996 thioredoxin 2; Provisional
Probab=96.99 E-value=0.0031 Score=56.85 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=57.4
Q ss_pred ceEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChh
Q 009206 279 KVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (540)
Q Consensus 279 ~~~vv~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~ 354 (540)
++.+|.|. +.+ ....+.+..++.++.+.+.|+.++.. ..+.++++|+|.+.|++++|++ +.....+.|..+.+
T Consensus 53 k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~V~~~Ptlii~~~-G~~v~~~~G~~~~e 129 (139)
T PRK10996 53 LPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AERELSARFRIRSIPTIMIFKN-GQVVDMLNGAVPKA 129 (139)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CCHHHHHhcCCCccCEEEEEEC-CEEEEEEcCCCCHH
Confidence 45566553 322 22345667777777666666666543 2468999999999999999985 44444568988999
Q ss_pred HHHHHHHhh
Q 009206 355 RLSEVMEQN 363 (540)
Q Consensus 355 ~l~~fi~~~ 363 (540)
.|.+|+++.
T Consensus 130 ~l~~~l~~~ 138 (139)
T PRK10996 130 PFDSWLNEA 138 (139)
T ss_pred HHHHHHHHh
Confidence 999999863
No 232
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.95 E-value=0.0027 Score=63.02 Aligned_cols=123 Identities=14% Similarity=0.208 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHhhccCceEEEEEe--ecccc-HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhhccC
Q 009206 290 ERASPFVRQISRNYWAYASFAFVLW--REEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQ 366 (540)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~~f~~v~~--~~~~~-~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~~~~ 366 (540)
....|.+..+|..+.....=+.|-+ .+|+. ..|+++|.|.++||+-+|+.+....-.|-|.++.+.|.+||++..-.
T Consensus 29 q~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 29 QMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred HHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 3456777777777765443222222 35655 78999999999999999998765555699999999999999986544
Q ss_pred CCccccccchhhhccCCCCCCCCCCCCceeEEEEEec-CCChhhHHHHHHHHHHHHhhccc
Q 009206 367 ELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMRETIRRVQETLLSD 426 (540)
Q Consensus 367 ~lp~l~~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~-~~~~~~~~~~~~l~~~~~~~~~~ 426 (540)
.+-++.+.+.+..... ++| ...+.+|- ..++++ +.++++|..++..
T Consensus 109 ~i~Ef~sl~~l~n~~~------p~K----~~vIgyF~~kdspey----~~~~kva~~lr~d 155 (375)
T KOG0912|consen 109 PINEFESLDQLQNLDI------PSK----RTVIGYFPSKDSPEY----DNLRKVASLLRDD 155 (375)
T ss_pred HHHHHHhHHHHHhhhc------ccc----ceEEEEeccCCCchH----HHHHHHHHHHhhc
Confidence 4667777665553321 222 24444554 345555 3455666665543
No 233
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.93 E-value=0.0052 Score=52.16 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=54.4
Q ss_pred eEEEEE-eC---CCCCCcHHHHHHHHhhccC---ceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCC
Q 009206 280 VKVIFF-SK---TGERASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (540)
Q Consensus 280 ~~vv~f-~~---~~~~~~~~~~~~A~~~~~~---~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~ 352 (540)
+.+|.| .+ .|....|.+..++..+++. +.++.+... ....++++|+|.+.|++++|+++ ....|.|..+
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~I~~~Pt~~l~~~~--~~~~~~G~~~ 92 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT--AYSSIASEFGVRGYPTIKLLKGD--LAYNYRGPRT 92 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc--cCHhHHhhcCCccccEEEEEcCC--CceeecCCCC
Confidence 445544 33 2344577888888877532 344444322 23689999999999999999653 3456889989
Q ss_pred hhHHHHHHHh
Q 009206 353 NSRLSEVMEQ 362 (540)
Q Consensus 353 ~~~l~~fi~~ 362 (540)
.+.|.+|++.
T Consensus 93 ~~~l~~~~~~ 102 (104)
T cd03000 93 KDDIVEFANR 102 (104)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 234
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.93 E-value=0.00098 Score=55.45 Aligned_cols=97 Identities=13% Similarity=0.243 Sum_probs=74.5
Q ss_pred CCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceee----eee
Q 009206 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR----GLP 218 (540)
Q Consensus 143 ~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~----~~P 218 (540)
..+|..++....-+||.|...--..-..+ ..+.++|..++|.+.++-|||.+. ....||+++. |. .-|
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~-e~kKLCKKlK------v~~~~kp~~ 80 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDS-ESRKLCKKLK------VDPSSKPKP 80 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCCh-HHHHHHHHHc------cCCCCCCCc
Confidence 46788888888889998887654444444 489999999999999999999953 2345999987 55 333
Q ss_pred -EEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 009206 219 -SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (540)
Q Consensus 219 -tl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~ 251 (540)
+|.-|.+|.-+ .+|+-..+..+|+.|++.
T Consensus 81 ~~LkHYKdG~fH----kdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 81 VELKHYKDGDFH----TEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred chhhcccCCCcc----ccccchhhHHHHHHHhhC
Confidence 36668888653 788889999999999864
No 235
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.84 E-value=0.0028 Score=57.64 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=50.1
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc---ceeeeeccch----------------------hhhhHHHHhC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA---NTGMVELGDI----------------------RLATHLAERK 206 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~---~v~~Vdc~~~----------------------~~~~~l~~~~ 206 (540)
.++++.++|-|-||+.|++|.|...++-+.++... -|.=|.-+.+ +...+|++
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~-- 109 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE-- 109 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH--
Confidence 46999999999999999999999999988887652 3333333311 11222333
Q ss_pred CCCccceeeeeeEEEEeCCCC
Q 009206 207 PIGQIFFRRGLPSLVAFPPGC 227 (540)
Q Consensus 207 ~~~~~~~V~~~Ptl~~f~~g~ 227 (540)
+|+|.+.|++++..+..
T Consensus 110 ----ky~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 110 ----KYEVKGIPALVILKPDG 126 (157)
T ss_pred ----hcccCcCceeEEecCCC
Confidence 45599999999887653
No 236
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.82 E-value=0.00083 Score=54.41 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=39.0
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh--hhHHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~--~~~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
++.|+++||++|+++.+.+.++. +.+...+..|+-+++.. ...+.+..+ +.++|++ |.+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g------~~~vP~v--~i~g 62 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITG------QRTVPNI--FING 62 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 47899999999999999998876 22223344444432221 122556566 8899998 4455
No 237
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.006 Score=60.99 Aligned_cols=108 Identities=12% Similarity=0.177 Sum_probs=81.7
Q ss_pred ceeEEeCCCCcccccc---CCCcEEEEEEec----CCCCccCChHHHHHHHHHHhcc--------cceeeeeccchhhhh
Q 009206 136 HAFNVVTSEDFPSIFH---DSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRLAT 200 (540)
Q Consensus 136 ~~V~~lt~~~F~~~v~---~~~~~lV~FYap----wC~~C~~l~p~~~~~A~~l~~~--------~~v~~Vdc~~~~~~~ 200 (540)
+.|..+++++|..++. .+..++|+|.|- .|.-|++...+|.-+|...... .=++.||.++.+.
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-- 117 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-- 117 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH--
Confidence 4689999999999983 566788999873 5999999999999999876421 1379999997665
Q ss_pred HHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccc---cCCCCHHHHHHHHHHh
Q 009206 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF---EGELSVDAVTDWFATA 252 (540)
Q Consensus 201 ~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y---~G~~~~~~i~~fi~~~ 252 (540)
+-+.++ ++..|+|++|++..........+ .-...++++.+|+..+
T Consensus 118 -~Fq~l~------ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 118 -VFQQLN------LNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred -HHHHhc------ccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 778888 99999999997653321222222 2233499999999875
No 238
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.71 E-value=0.0043 Score=53.73 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=78.0
Q ss_pred eEEeCCCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHH---HhcccceeeeeccchhhhhHHHHhCCCCcccee
Q 009206 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL---LEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (540)
Q Consensus 138 V~~lt~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~---l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V 214 (540)
|.++|.+|+.....+..+..+.||.+ ..-..+.+.+.++|+. ++|...+..+|.++... ..+.+| +
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~---~~~~fg------l 69 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH---PLLHLG------K 69 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh---HHHHcC------C
Confidence 45688889887778888888788833 2346788999999999 88888999999995544 678888 6
Q ss_pred ee--eeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 215 RG--LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 215 ~~--~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
++ +|.+.+...... ..+..+.+..++++|.+|+.+.
T Consensus 70 ~~~~~P~i~i~~~~~~--~Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 70 TPADLPVIAIDSFRHM--YLFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred CHhHCCEEEEEcchhc--CcCCCCccccCHHHHHHHHHHH
Confidence 65 999999876431 1122256889999999999876
No 239
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.68 E-value=0.007 Score=50.70 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=55.0
Q ss_pred CceEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 009206 278 HKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (540)
Q Consensus 278 ~~~~vv~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~ 353 (540)
+++.+++|. +. |....+.+..++..+.+.+.+..++.. ...+++++++|.+.|++++|++ +.....+.|..+.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~vPt~~i~~~-g~~v~~~~g~~~~ 89 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMGTPTVQFFKD-KELVKEISGVKMK 89 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCeeccEEEEEEC-CeEEEEEeCCccH
Confidence 456566554 22 222356666777777655666666532 2467999999999999999986 4434446888888
Q ss_pred hHHHHHHH
Q 009206 354 SRLSEVME 361 (540)
Q Consensus 354 ~~l~~fi~ 361 (540)
+.|.+||+
T Consensus 90 ~~~~~~l~ 97 (97)
T cd02949 90 SEYREFIE 97 (97)
T ss_pred HHHHHhhC
Confidence 88888873
No 240
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.67 E-value=0.0042 Score=61.68 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=65.6
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchh--------hhhHHHHhCCCCccceeeeeeEEEEe
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIGQIFFRRGLPSLVAF 223 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~--------~~~~l~~~~~~~~~~~V~~~Ptl~~f 223 (540)
.++.-||.||...|++|++++|+...+++... ..+-.|+++... ....++++++ |..+|++++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~Pal~Lv 220 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLG------VKYFPALYLV 220 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcC------CccCceEEEE
Confidence 45688999999999999999999999999875 345555555331 1123677887 9999999998
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 224 PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 224 ~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
..+... ....=.|..+.++|.+=+...
T Consensus 221 ~~~t~~--~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 221 NPKSQK--MSPLAYGFISQDELKERILNV 247 (256)
T ss_pred ECCCCc--EEEEeeccCCHHHHHHHHHHH
Confidence 776431 111125889999998766544
No 241
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.66 E-value=0.0096 Score=50.48 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=55.7
Q ss_pred hhhhhhhcCCCceEEEEE-eC---CCCCCcHHHHHHHHhhccC-ceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCC
Q 009206 268 GKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~ 342 (540)
++++++. +++.+|.| .+ .|....|.+..++..+.+. ..|+.+... ...++++|+|++.||+++|+++..
T Consensus 10 ~~~~i~~---~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 10 WEELLSN---KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred HHHHHcc---CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---CHHHHHHcCCCcCcEEEEEECCEE
Confidence 4555542 34656655 32 3344567777777777532 456666533 457899999999999999986543
Q ss_pred ceeeecCCCChhHHHHHHHh
Q 009206 343 KPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 343 ~~~~y~G~~~~~~l~~fi~~ 362 (540)
. ....|. +...|.++|.+
T Consensus 84 ~-~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 V-AVIRGA-NAPLLNKTITE 101 (102)
T ss_pred E-EEEecC-ChHHHHHHHhh
Confidence 2 223553 77888888764
No 242
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.66 E-value=0.0047 Score=60.26 Aligned_cols=81 Identities=11% Similarity=0.123 Sum_probs=58.4
Q ss_pred eEEEEEeCC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeee-cCCCChhH
Q 009206 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY-YGSFNNSR 355 (540)
Q Consensus 280 ~~vv~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y-~G~~~~~~ 355 (540)
+.|.|+.+. |....|.+..++..+.+.+.|+.++... ...++++|+|.++||+++|+++. ...| .|..+.+.
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~--~~~l~~~~~I~~~PTl~~f~~G~--~v~~~~G~~s~e~ 130 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR--ALNLAKRFAIKGYPTLLLFDKGK--MYQYEGGDRSTEK 130 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc--cHHHHHHcCCCcCCEEEEEECCE--EEEeeCCCCCHHH
Confidence 444455432 3345677888888887777777665322 36899999999999999999643 3334 67789999
Q ss_pred HHHHHHhhc
Q 009206 356 LSEVMEQNK 364 (540)
Q Consensus 356 l~~fi~~~~ 364 (540)
|.+|+..+.
T Consensus 131 L~~fi~~~~ 139 (224)
T PTZ00443 131 LAAFALGDF 139 (224)
T ss_pred HHHHHHHHH
Confidence 999998764
No 243
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.016 Score=49.76 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=60.6
Q ss_pred CceEEEEEe----CCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 009206 278 HKVKVIFFS----KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (540)
Q Consensus 278 ~~~~vv~f~----~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~ 353 (540)
+++.|+-|. ..+....|.+..+|.+|.+ +.|..|++.+ ..++++.++|..-||+++||++...- .+-|. +.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~~-~~vGa-~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEVD-EVVGA-NK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEEE-EEecC-CH
Confidence 467777553 2345578999999999987 8899998765 67899999999999999999765433 34454 55
Q ss_pred hHHHHHHHhh
Q 009206 354 SRLSEVMEQN 363 (540)
Q Consensus 354 ~~l~~fi~~~ 363 (540)
..|.+.|..+
T Consensus 96 ~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 AELEKKIAKH 105 (106)
T ss_pred HHHHHHHHhc
Confidence 5777776653
No 244
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.63 E-value=0.0049 Score=55.03 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=42.5
Q ss_pred CCcEEEEEE-ecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCC
Q 009206 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (540)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~ 207 (540)
+++++|.|| +.||+.|....|.+.++...+... +.+..|..+........+++++
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 688999999 589999999999999999988754 3677777665555555566655
No 245
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0019 Score=57.85 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=53.2
Q ss_pred CCccccccccCcc--CCCCHHHHHHHHHHHHHhcCCCCCC--------CcHHHHHHHHHHHHHcCChhhhhhhh--hcc
Q 009206 34 SFPPSHYDALGIK--PYSSVEQVKEAYEKFSSKWNSGEEI--------PSTADFLKIQYAYELLTDPLWKRNYD--VYG 100 (540)
Q Consensus 34 ~~~~~~y~iLgv~--~~a~~~~Ik~ayr~l~~~~HPD~~~--------~~~~~f~~i~~Ay~~L~d~~~r~~yd--~~g 100 (540)
..+.+||.++|.. ....++.++.-|.-..++.|||+.. .+.+.-.++++||.+|+||-+|+.|= ..|
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 3466899999765 4456677777899999999999732 24677999999999999999999994 345
No 246
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.62 E-value=0.015 Score=50.40 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=55.8
Q ss_pred eEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCC-ceeeecCCCChh
Q 009206 280 VKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYYGSFNNS 354 (540)
Q Consensus 280 ~~vv~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~-~~~~y~G~~~~~ 354 (540)
..+++|+ + .|....+.+..++..+ +.+.|..+.... .++++++|+|.+.||+++|++++. ..+.|.|..+..
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~ 100 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGY 100 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchH
Confidence 3455553 2 2333457777777665 456677776432 468999999999999999997643 334578887888
Q ss_pred HHHHHHHh
Q 009206 355 RLSEVMEQ 362 (540)
Q Consensus 355 ~l~~fi~~ 362 (540)
++.+||..
T Consensus 101 el~~~i~~ 108 (113)
T cd02975 101 EFASLIED 108 (113)
T ss_pred HHHHHHHH
Confidence 88888875
No 247
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.61 E-value=0.012 Score=51.11 Aligned_cols=78 Identities=10% Similarity=0.198 Sum_probs=50.4
Q ss_pred eEEE-EEeC---CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceee-----ec--
Q 009206 280 VKVI-FFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-----YY-- 348 (540)
Q Consensus 280 ~~vv-~f~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~-----y~-- 348 (540)
+.+| |+.+ .|....|.+..++.+|. ...|..|+... ...++++|+|.+.||+++|+++...... ..
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~ 100 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEK--APFLVEKLNIKVLPTVILFKNGKTVDRIVGFEELGGK 100 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEccc--CHHHHHHCCCccCCEEEEEECCEEEEEEECccccCCC
Confidence 4455 4433 23345677888888775 46777776433 3679999999999999999986432111 11
Q ss_pred CCCChhHHHHHH
Q 009206 349 GSFNNSRLSEVM 360 (540)
Q Consensus 349 G~~~~~~l~~fi 360 (540)
++++.+++..|+
T Consensus 101 ~~~~~~~~e~~~ 112 (113)
T cd02989 101 DDFSTETLEKRL 112 (113)
T ss_pred CCCCHHHHHHHh
Confidence 345566666664
No 248
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.61 E-value=0.0061 Score=57.55 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=57.6
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHH-Hhc--ccceeeeeccchh-hhhHHHH--------hCC---C--------
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEG--IANTGMVELGDIR-LATHLAE--------RKP---I-------- 208 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~-l~~--~~~v~~Vdc~~~~-~~~~l~~--------~~~---~-------- 208 (540)
.+++++|+|+|.||+.|..-.|..++++.. +.- .-....||.++.. ....+.+ .++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 489999999999999999999999999642 211 0023667766421 1111111 122 0
Q ss_pred CccceeeeeeEE-EEeC-CCCCCCCCcccccCCCCHHHHHH
Q 009206 209 GQIFFRRGLPSL-VAFP-PGCKSSDCMTRFEGELSVDAVTD 247 (540)
Q Consensus 209 ~~~~~V~~~Ptl-~~f~-~g~~~~~~~~~y~G~~~~~~i~~ 247 (540)
.+.|.+.++|+- .++- +|.. ...+.|..+.+.+..
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkV----v~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKV----KFVKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcE----EEEEeCCCCHHHHHH
Confidence 124558999777 4553 4432 456679988887766
No 249
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.59 E-value=0.0036 Score=54.68 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=64.0
Q ss_pred cCCCcEEEEEEec----CCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 151 HDSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 151 ~~~~~~lV~FYap----wC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
++.+..+|.+|+| ||..|+..- .=+++.+-+....-+-..|++.... ..++..++ +.+||++.++...
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~eg-~~la~~l~------~~~~P~~~~l~~~ 86 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKPEG-YRVSQALR------ERTYPFLAMIMLK 86 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCChHH-HHHHHHhC------CCCCCEEEEEEec
Confidence 4789999999999 888886532 1123444455444566677664433 34888888 9999999998321
Q ss_pred CCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 227 ~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
........+..|.+++++++..+...
T Consensus 87 ~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 87 DNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 11112345678999999999988765
No 250
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.58 E-value=0.016 Score=49.23 Aligned_cols=90 Identities=20% Similarity=0.164 Sum_probs=57.9
Q ss_pred hhhhhhhcCCCceEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEeeccc-cHHHHHHcCCCCCCEEEEEeCCCC
Q 009206 268 GKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGV 342 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~-~~~l~~~f~V~~~Ptlv~fk~~~~ 342 (540)
+++.+... .+++.+|.| .+ .|....|.+..++..| ..+.|+.++..... ...++++|+|.+.||+++|+++ .
T Consensus 6 ~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G-~ 82 (103)
T cd02985 6 LDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG-E 82 (103)
T ss_pred HHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC-e
Confidence 34444432 245666655 33 2334567788888888 56777777754332 1479999999999999999865 4
Q ss_pred ceeeecCCCChhHHHHHHH
Q 009206 343 KPVVYYGSFNNSRLSEVME 361 (540)
Q Consensus 343 ~~~~y~G~~~~~~l~~fi~ 361 (540)
....+.|. ....|.+-+.
T Consensus 83 ~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 83 KIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred EEEEEeCC-CHHHHHHHHH
Confidence 44457775 5566666554
No 251
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.55 E-value=0.02 Score=49.79 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=61.4
Q ss_pred hhhhhhhcCCCceEEEEEe---CCCCCCcHHHHHHH-H--hhccCceEEEEEeecc---ccHHHHHHcCCC--CCCEEEE
Q 009206 268 GKNFLAKTGPHKVKVIFFS---KTGERASPFVRQIS-R--NYWAYASFAFVLWREE---ESSIWWNTFEVE--SAPAIVF 336 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f~---~~~~~~~~~~~~~A-~--~~~~~~~f~~v~~~~~---~~~~l~~~f~V~--~~Ptlv~ 336 (540)
+++.+... +..+|=|. +-++. .-.++.+| . +-.+.+-++.|.+.+- ++.+|+++|+|. .+|.+++
T Consensus 14 FdKvi~kf---~~~LVKFD~ayPyGeK-hd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~L 89 (126)
T PF07912_consen 14 FDKVIPKF---KYVLVKFDVAYPYGEK-HDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYL 89 (126)
T ss_dssp HHHHGGGS---SEEEEEEEESS--CHH-HHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEE
T ss_pred hhheeccC---ceEEEEEeccCCCcch-HHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEE
Confidence 45555543 24455553 12221 23445555 2 2345677899988753 457899999996 4899999
Q ss_pred EeCCCCceeee--cCCCChhHHHHHHHhhccC
Q 009206 337 LKDPGVKPVVY--YGSFNNSRLSEVMEQNKLQ 366 (540)
Q Consensus 337 fk~~~~~~~~y--~G~~~~~~l~~fi~~~~~~ 366 (540)
|..+.+.|+.| +|.++.+.|+.|+++|.-.
T Consensus 90 F~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 90 FVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp EESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred ecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence 99888899999 8999999999999998543
No 252
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.55 E-value=0.01 Score=52.86 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=61.8
Q ss_pred CceEEEEEeCCC-C-------CCcHHHHHHHHhhccC-ceEEEEEeeccccHHHHHHcCCCC--CCEEEEEeCCCCceee
Q 009206 278 HKVKVIFFSKTG-E-------RASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVV 346 (540)
Q Consensus 278 ~~~~vv~f~~~~-~-------~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~~f~V~~--~Ptlv~fk~~~~~~~~ 346 (540)
+.+++|.|-++. + .....++.+|.+|++. +.|+.+...+. ..+.+.|||.+ +|+++++...+.+...
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~--~~~~~~fgl~~~~~P~v~i~~~~~~KY~~ 97 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ--LDLEEALNIGGFGYPAMVAINFRKMKFAT 97 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc--HHHHHHcCCCccCCCEEEEEecccCcccc
Confidence 458888885431 1 1133456699999988 78888775442 45999999964 8999999875434333
Q ss_pred ecCCCChhHHHHHHHhhcc
Q 009206 347 YYGSFNNSRLSEVMEQNKL 365 (540)
Q Consensus 347 y~G~~~~~~l~~fi~~~~~ 365 (540)
+.|.++.+.|.+|++...-
T Consensus 98 ~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 98 LKGSFSEDGINEFLRELSY 116 (130)
T ss_pred ccCccCHHHHHHHHHHHHc
Confidence 6799999999999987543
No 253
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.51 E-value=0.015 Score=50.33 Aligned_cols=60 Identities=12% Similarity=0.221 Sum_probs=42.5
Q ss_pred ceEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCC
Q 009206 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (540)
Q Consensus 279 ~~~vv~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~ 342 (540)
.+.+|.| .+. |....|.+..+|..|. ...|+.|+.... .++++|+|.+.||+++|+++..
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f~~G~~ 88 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA---FLVNYLDIKVLPTLLVYKNGEL 88 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh---HHHHhcCCCcCCEEEEEECCEE
Confidence 4555544 333 3334677788888874 467777765432 7999999999999999998643
No 254
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.36 E-value=0.017 Score=54.03 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=36.6
Q ss_pred CCCcEEEEEE-ecCCCCccCChHHHHHHHHHHhcc-cceeeeeccc
Q 009206 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD 195 (540)
Q Consensus 152 ~~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~ 195 (540)
.+++++|.|| +.||++|..-.|.+.++++++... +.+..|.++.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3578999999 899999999999999999999754 3666777764
No 255
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.35 E-value=0.0086 Score=52.00 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=46.9
Q ss_pred CceEEEEEe----CCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC
Q 009206 278 HKVKVIFFS----KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 278 ~~~~vv~f~----~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
+++.||.|. ..|....|.+..+|.+|.+.+.|..|+..+ .++++++|+|.+.||+++|+++.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCE
Confidence 446666553 234445788888999887777788887544 36899999999999999999754
No 256
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.35 E-value=0.0076 Score=59.53 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=62.8
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccc--hh------hhhHHHHhCCCCccceeeeeeEEEEe
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD--IR------LATHLAERKPIGQIFFRRGLPSLVAF 223 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~--~~------~~~~l~~~~~~~~~~~V~~~Ptl~~f 223 (540)
.++.-|+.||...|++|++++|+...+++...= .+-.|.++. .+ .....+++++ |..+|++++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~PAl~Lv 213 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLG------VKYFPALMLV 213 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcC------CcccceEEEE
Confidence 456889999999999999999999999998753 343444432 11 1122456666 9999999999
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 224 PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 224 ~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
..+... ....=.|..+.++|.+=+...
T Consensus 214 ~~~t~~--~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 214 DPKSGS--VRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred ECCCCc--EEEEeeccCCHHHHHHHHHHH
Confidence 776531 111125888998887765443
No 257
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.32 E-value=0.0088 Score=56.59 Aligned_cols=55 Identities=9% Similarity=-0.128 Sum_probs=42.8
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeecc--------chhhhhHHHH-hCC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLAE-RKP 207 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~--------~~~~~~~l~~-~~~ 207 (540)
.++++||.|+|.||+.|++ .|.++++.+++++.+ .|..|.|. ........|+ +++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g 88 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG 88 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC
Confidence 4689999999999999976 779999999998654 88899884 2334445665 565
No 258
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.026 Score=54.15 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=64.5
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCC
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~ 230 (540)
...+..++.|+++||..|+++.-..+.+|+.. ....+.+++.++.+. +|+.+. |...|.++.+..|..
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e---is~~~~------v~~vp~~~~~~~~~~-- 82 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE---ISNLIA------VEAVPYFVFFFLGEK-- 82 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH---HHHHHH------HhcCceeeeeecchh--
Confidence 46788999999999999999999999999988 556899999996665 888887 899999999988754
Q ss_pred CCcccccCCCCHHH
Q 009206 231 DCMTRFEGELSVDA 244 (540)
Q Consensus 231 ~~~~~y~G~~~~~~ 244 (540)
..+..|......
T Consensus 83 --v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 83 --VDRLSGADPPFL 94 (227)
T ss_pred --hhhhhccCcHHH
Confidence 344455444333
No 259
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.27 E-value=0.021 Score=53.71 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=53.9
Q ss_pred ceEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceee--e----c
Q 009206 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV--Y----Y 348 (540)
Q Consensus 279 ~~~vv~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~--y----~ 348 (540)
.++||.| .+. |....|.+..+|..|. .+.|..|....+ .++.+|+|...||+++|+++...... + .
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~---~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g 159 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT---GASDEFDTDALPALLVYKGGELIGNFVRVTEDLG 159 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch---hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcC
Confidence 3556655 332 2334677888898874 578888875543 68999999999999999986432111 1 1
Q ss_pred CCCChhHHHHHHHh
Q 009206 349 GSFNNSRLSEVMEQ 362 (540)
Q Consensus 349 G~~~~~~l~~fi~~ 362 (540)
+.++.+.|..|+.+
T Consensus 160 ~~f~~~~le~~L~~ 173 (175)
T cd02987 160 EDFDAEDLESFLVE 173 (175)
T ss_pred CCCCHHHHHHHHHh
Confidence 24677788887765
No 260
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.27 E-value=0.0077 Score=56.07 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=44.1
Q ss_pred CCCcEEEEEEecC-CCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCC
Q 009206 152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (540)
Q Consensus 152 ~~~~~lV~FYapw-C~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~ 207 (540)
.+++++|.||+.| |+.|.+-.|.+.++++++. ...|..|+++........+++++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence 3678999999999 9999999999999999884 45788888875544455666665
No 261
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.18 E-value=0.028 Score=53.15 Aligned_cols=42 Identities=5% Similarity=-0.116 Sum_probs=34.5
Q ss_pred CCc-EEEEEEecCCCCccCChHHHHHHHHHHhcc-cceeeeecc
Q 009206 153 SKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (540)
Q Consensus 153 ~~~-~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~ 194 (540)
+++ +++.++|.||+.|++-.|.++++.+++++. +.|..|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 554 455668999999999999999999999865 478888874
No 262
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.17 E-value=0.027 Score=53.40 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=36.6
Q ss_pred CCCcEEEEEE-ecCCCCccCChHHHHHHHHHHhccc-ceeeeeccc
Q 009206 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (540)
Q Consensus 152 ~~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~ 195 (540)
.+++++|.|| +.||+.|..-.|.+.++..++++.. .+..|.++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 3678999999 9999999999999999999987543 677777663
No 263
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.11 E-value=0.0027 Score=55.47 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=45.7
Q ss_pred cCCCcEEEEEEe-------cCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEe
Q 009206 151 HDSKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (540)
Q Consensus 151 ~~~~~~lV~FYa-------pwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f 223 (540)
+++++.+|.|++ +||+.|.+..|..+++-........+..|...+.+.-.+-...|.....+.|+++|||+-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 356899999994 6999999999999998887655556777776533211111011110012449999999999
Q ss_pred CCCC
Q 009206 224 PPGC 227 (540)
Q Consensus 224 ~~g~ 227 (540)
..+.
T Consensus 97 ~~~~ 100 (119)
T PF06110_consen 97 ETGE 100 (119)
T ss_dssp TSS-
T ss_pred CCCC
Confidence 8763
No 264
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.07 E-value=0.008 Score=54.08 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=40.3
Q ss_pred CCcEEEEE-EecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCC
Q 009206 153 SKPWLIQV-YSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (540)
Q Consensus 153 ~~~~lV~F-YapwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~ 207 (540)
+++++|.| .+.||+.|+...|.+.++.+++... +.+..|+.++.......+++.+
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~ 79 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF 79 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC
Confidence 34555555 5999999999999999999999754 4788888875554444555554
No 265
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.02 E-value=0.012 Score=45.60 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=36.3
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh-hhHHHHhCCCCccceeeeeeEEEE
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~-~~~l~~~~~~~~~~~V~~~Ptl~~ 222 (540)
++.|+++||++|.++.+.+++. ...+..++.+.+.. ...+.+..+ +.++|+|..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNG------YRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcC------CcccCEEEE
Confidence 5788999999999987766652 13566777764432 222333335 779999976
No 266
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0052 Score=52.87 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=56.6
Q ss_pred Cccccc---cCCCcEEEEEEe--------cCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccce
Q 009206 145 DFPSIF---HDSKPWLIQVYS--------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (540)
Q Consensus 145 ~F~~~v---~~~~~~lV~FYa--------pwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (540)
.|++.+ .+++.++|.|++ +||+.|.+..|...++-+.......|..|+..+.+.=...+. ++.+.+.
T Consensus 14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n--~FR~d~~ 91 (128)
T KOG3425|consen 14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPAN--PFRKDPG 91 (128)
T ss_pred HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCC--ccccCCC
Confidence 455554 355669999994 799999999999999988666666889999885543322222 3334344
Q ss_pred e-eeeeEEEEeCC
Q 009206 214 R-RGLPSLVAFPP 225 (540)
Q Consensus 214 V-~~~Ptl~~f~~ 225 (540)
+ .++|||+=+.+
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 5 99999988875
No 267
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.00 E-value=0.037 Score=44.52 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=51.1
Q ss_pred ceEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChh
Q 009206 279 KVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (540)
Q Consensus 279 ~~~vv~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~ 354 (540)
++.+|+|. +. +....+.+..++.. ...+.|+.+.... ...+++.|++.+.|++++|+++. ....+.|..+.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~ 86 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGK-EVDRVVGADPKE 86 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCE-EEEEEecCCCHH
Confidence 35555553 32 22234555556555 3456666665433 36799999999999999998654 344567777778
Q ss_pred HHHHHH
Q 009206 355 RLSEVM 360 (540)
Q Consensus 355 ~l~~fi 360 (540)
.|.+||
T Consensus 87 ~l~~~i 92 (93)
T cd02947 87 ELEEFL 92 (93)
T ss_pred HHHHHh
Confidence 888886
No 268
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.98 E-value=0.016 Score=64.57 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=62.5
Q ss_pred CCcEEEE-EEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCC
Q 009206 153 SKPWLIQ-VYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (540)
Q Consensus 153 ~~~~lV~-FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~ 231 (540)
++++-|+ |++|+|++|.+..-.++++|.+.. .+..-.|+.++.+. ++++|+ |.++|++++ +|.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~---~~~~~~------v~~vP~~~i--~~~---- 538 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPD---LKDEYG------IMSVPAIVV--DDQ---- 538 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHH---HHHhCC------ceecCEEEE--CCE----
Confidence 4565555 579999999999999999998764 34677888886655 889998 999999876 443
Q ss_pred CcccccCCCCHHHHHHHH
Q 009206 232 CMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 232 ~~~~y~G~~~~~~i~~fi 249 (540)
..+.|..+.+.|++|+
T Consensus 539 --~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 539 --QVYFGKKTIEEMLELI 554 (555)
T ss_pred --EEEeeCCCHHHHHHhh
Confidence 4567988999999886
No 269
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.97 E-value=0.036 Score=45.97 Aligned_cols=87 Identities=15% Similarity=0.263 Sum_probs=51.6
Q ss_pred hhhhhhcCCCceEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCce
Q 009206 269 KNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP 344 (540)
Q Consensus 269 ~~fl~~~~~~~~~vv~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~ 344 (540)
++.+.... +++.+|.| .+. +....+.+..++..+...+.+..+... ...+++++|+|.+.||+++|+++ ..-
T Consensus 6 ~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g-~~~ 81 (97)
T cd02984 6 EELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE--ELPEISEKFEITAVPTFVFFRNG-TIV 81 (97)
T ss_pred HHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc--cCHHHHHhcCCccccEEEEEECC-EEE
Confidence 34444332 34555555 332 233456666677765445556555432 34679999999999999999854 322
Q ss_pred eeecCCCChhHHHHHH
Q 009206 345 VVYYGSFNNSRLSEVM 360 (540)
Q Consensus 345 ~~y~G~~~~~~l~~fi 360 (540)
..+.|. +...|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 234554 566666654
No 270
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.94 E-value=0.014 Score=52.43 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=42.5
Q ss_pred CCCcEEEEEEecC-CCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCC
Q 009206 152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (540)
Q Consensus 152 ~~~~~lV~FYapw-C~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~ 207 (540)
.++++++.||+.| |++|..-.|.+.++.+++++ +.|..|+.+.........++++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~ 80 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEG 80 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcC
Confidence 3678999999998 69999999999999998864 4688888875443344555555
No 271
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.91 E-value=0.018 Score=52.57 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=42.4
Q ss_pred CCCcEEEEEEec-CCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCC
Q 009206 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (540)
Q Consensus 152 ~~~~~lV~FYap-wC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~ 207 (540)
.+++++|.||+. ||+.|....+.+.++.+.+++. +.+..|+.+........+++.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~ 86 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL 86 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 467899999975 6889999999999999999765 3777777765555555555554
No 272
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.88 E-value=0.0096 Score=48.68 Aligned_cols=80 Identities=8% Similarity=0.079 Sum_probs=53.0
Q ss_pred EEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchh-hhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcc
Q 009206 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT 234 (540)
Q Consensus 156 ~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~-~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~ 234 (540)
-++.|+.|||++|++....+++++.++.+ ..+..+|.+++. ....+.+..+.+ +.++|+|. .+|..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~----~~~vP~if--i~g~~------ 68 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKP----VETVPQIF--VDQKH------ 68 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCC----CCcCCEEE--ECCEE------
Confidence 36789999999999999999998876533 367788877542 122344444422 67999975 46532
Q ss_pred cccCCCCHHHHHHHHHHh
Q 009206 235 RFEGELSVDAVTDWFATA 252 (540)
Q Consensus 235 ~y~G~~~~~~i~~fi~~~ 252 (540)
-| ..++|.++++..
T Consensus 69 --ig--g~~~~~~~~~~~ 82 (85)
T PRK11200 69 --IG--GCTDFEAYVKEN 82 (85)
T ss_pred --Ec--CHHHHHHHHHHh
Confidence 22 346777777654
No 273
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.86 E-value=0.028 Score=49.33 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=35.2
Q ss_pred HHHHHHcCCCCCCEEEEEeCC-CCceeeecCCCChhHHHHHHHh
Q 009206 320 SIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~-~~~~~~y~G~~~~~~l~~fi~~ 362 (540)
..++.+|+|.+.|++++|.++ +.....+.|..+.+.+..+++.
T Consensus 74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 579999999999999999876 5554557888888888888765
No 274
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.86 E-value=0.014 Score=52.61 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=41.6
Q ss_pred CcEEEEEE-ecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhCC
Q 009206 154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (540)
Q Consensus 154 ~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~~ 207 (540)
++++|.|| +.||+.|..-.|.+.++.+++... +.+..|+.+.........++++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 84 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG 84 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence 67777777 999999999999999999999754 4788888775444444556654
No 275
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.70 E-value=0.014 Score=55.87 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=52.5
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHH----------------------HH----------Hhcc--c-ce--eeeecc
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIA----------------------AL----------LEGI--A-NT--GMVELG 194 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A----------------------~~----------l~~~--~-~v--~~Vdc~ 194 (540)
+.+..++.|..|.|++|+++.+...+.. .. +... . .. ..-.|.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~ 155 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCD 155 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccC
Confidence 4688999999999999999988776410 00 0000 0 00 001122
Q ss_pred c-hhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 195 D-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 195 ~-~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
. -.....+++++| |+|.|||+ |.+|. .+.|..+.+.|.+|+
T Consensus 156 ~~i~~~~~l~~~~g------i~gtPtii-~~~G~-------~~~G~~~~~~l~~~L 197 (197)
T cd03020 156 NPVAANLALGRQLG------VNGTPTIV-LADGR-------VVPGAPPAAQLEALL 197 (197)
T ss_pred chHHHHHHHHHHcC------CCcccEEE-ECCCe-------EecCCCCHHHHHhhC
Confidence 1 112234777777 99999997 77773 357888888887663
No 276
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.70 E-value=0.009 Score=55.81 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=63.4
Q ss_pred CCCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEE
Q 009206 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (540)
Q Consensus 143 ~~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~ 222 (540)
..+|-+.+....-+++.||-|.-..|+-+-...+.+|+..-+ .+|.+||+..-+- |+.+++ |+-+|++.+
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PF---lv~kL~------IkVLP~v~l 143 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPF---LVTKLN------IKVLPTVAL 143 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCce---eeeeee------eeEeeeEEE
Confidence 455666666777899999999999999999999999976432 2899999995554 899999 999999999
Q ss_pred eCCCCC
Q 009206 223 FPPGCK 228 (540)
Q Consensus 223 f~~g~~ 228 (540)
|.+|..
T Consensus 144 ~k~g~~ 149 (211)
T KOG1672|consen 144 FKNGKT 149 (211)
T ss_pred EEcCEE
Confidence 999964
No 277
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=95.59 E-value=0.068 Score=50.78 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=61.3
Q ss_pred CCCcEEEEEE-ecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchhhh----------------------hHHHHhCC
Q 009206 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLA----------------------THLAERKP 207 (540)
Q Consensus 152 ~~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~~~----------------------~~l~~~~~ 207 (540)
.++++++.|| +.||+.|..-.+.+.+...+++... .+..|.++..... ..+++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3568899999 9999999999999999999997543 5666666633221 13455555
Q ss_pred CCcccee----eee--eEEEEeC-CCCCCCCCcc-cc--cCCCCHHHHHHHHHHh
Q 009206 208 IGQIFFR----RGL--PSLVAFP-PGCKSSDCMT-RF--EGELSVDAVTDWFATA 252 (540)
Q Consensus 208 ~~~~~~V----~~~--Ptl~~f~-~g~~~~~~~~-~y--~G~~~~~~i~~fi~~~ 252 (540)
+ .++ |+..++- +|... +. .+ ...++++.+...+...
T Consensus 110 ------v~~~~~g~~~r~tfIID~~G~I~---~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 ------NMREDEGLADRATFVVDPQGIIQ---AIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred ------CCcccCCceeeEEEEECCCCEEE---EEEEeCCCCCCCHHHHHHHHHhh
Confidence 5 355 8888885 44321 11 11 2457888888887543
No 278
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=95.58 E-value=0.026 Score=50.25 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=42.4
Q ss_pred CCCcEEEEEE-ecCCCCccCChHHHHHHHHHHhcc-cceeeeeccchhhhhHHHHhC
Q 009206 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK 206 (540)
Q Consensus 152 ~~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-~~v~~Vdc~~~~~~~~l~~~~ 206 (540)
.+++++|.|| +.||+.|....|.+.++..+++.. +.+..|..+........+++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 5788999999 789999999999999999999543 478888877544444445554
No 279
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.57 E-value=0.019 Score=51.23 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=37.1
Q ss_pred CCCcEEEEEEecCCCC-ccCChHHHHHHHHHHhcc----cceeeeecc
Q 009206 152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEGI----ANTGMVELG 194 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~-C~~l~p~~~~~A~~l~~~----~~v~~Vdc~ 194 (540)
.+++++|.||++||+. |.+..+.++++...++.. +.+..|+++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4689999999999997 999999999999999753 577777775
No 280
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.47 E-value=0.087 Score=47.59 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=57.2
Q ss_pred hhhhhhhcCCCceEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEE-EEeCCCC
Q 009206 268 GKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV-FLKDPGV 342 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv-~fk~~~~ 342 (540)
+++.+... .++++||-|. + .|....|.+..+|.++.+...|..|++.+ .+++++.|+|.+.|+++ +||++..
T Consensus 14 ~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 14 VDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred HHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcEEEEEECCeE
Confidence 44444322 3456666553 2 23445788888999887767777776543 47899999999766666 8886532
Q ss_pred ceee-ecC--------CCChhHHHHHHHh
Q 009206 343 KPVV-YYG--------SFNNSRLSEVMEQ 362 (540)
Q Consensus 343 ~~~~-y~G--------~~~~~~l~~fi~~ 362 (540)
.+. ..| ..+.++|.+.++.
T Consensus 91 -~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 91 -MIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred -EEEEecccccccccccCCHHHHHHHHHH
Confidence 333 355 2455666666655
No 281
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.44 E-value=0.031 Score=48.40 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=67.4
Q ss_pred EeCCCCccccccCCCcEEEEEE----ecCCCCccCChHHHHHHHHHHh-cccceeeeeccchhhhhHHHHhCCCCcccee
Q 009206 140 VVTSEDFPSIFHDSKPWLIQVY----SDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (540)
Q Consensus 140 ~lt~~~F~~~v~~~~~~lV~FY----apwC~~C~~l~p~~~~~A~~l~-~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V 214 (540)
++|.+|..... ..+.++-|| +..-..-..+...+.++|+.++ |.+.++.+|.++... ..+.+| +
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~---~l~~fg------l 71 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH---ELEEFG------L 71 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH---HHHHcC------C
Confidence 45666665553 333455544 2233334568899999999999 688999999996544 667888 5
Q ss_pred e--e--eeEEEEeCCCCCCCCCcccccCCC-CHHHHHHHHHHh
Q 009206 215 R--G--LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATA 252 (540)
Q Consensus 215 ~--~--~Ptl~~f~~g~~~~~~~~~y~G~~-~~~~i~~fi~~~ 252 (540)
+ . +|+++++...... +. ..+.. +.++|.+|+.+.
T Consensus 72 ~~~~~~~P~~~i~~~~~~K---Y~-~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 72 DFSGGEKPVVAIRTAKGKK---YV-MEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CcccCCCCEEEEEeCCCCc---cC-CCcccCCHHHHHHHHHHh
Confidence 5 4 9999998743221 22 36778 999999998763
No 282
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.42 E-value=0.043 Score=53.98 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=58.8
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHHHHH-H---------hcc---------------------------cceeeeec
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-L---------EGI---------------------------ANTGMVEL 193 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~-l---------~~~---------------------------~~v~~Vdc 193 (540)
.+.+..++.|.-|.|++|+++.+++.++.+. + .|. ..+..-.|
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 3567889999999999999999888775320 0 000 00111123
Q ss_pred cc-hhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 009206 194 GD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 194 ~~-~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
.. -.....+|+++| |+|.|||+ |.+|. ...|..+.+.|.+++.+.
T Consensus 185 ~~~v~~~~~la~~lg------i~gTPtiv-~~~G~-------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFG------VQGTPAIV-LSNGT-------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcC------CccccEEE-EcCCe-------EeeCCCCHHHHHHHHHHc
Confidence 21 122234677777 99999998 77774 347999999999998754
No 283
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.30 E-value=0.045 Score=60.37 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=65.6
Q ss_pred CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCC
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~ 232 (540)
...-+-.|++|.|++|.+....++++|.. .+.+..-.||..+++. ++++|+ |.++|++++ +|.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~~~~~---~~~~~~------v~~VP~~~i--~~~----- 178 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGALFQD---EVEARN------IMAVPTVFL--NGE----- 178 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEchhCHh---HHHhcC------CcccCEEEE--CCc-----
Confidence 45568889999999999988888888874 3455788888886665 889998 999999965 553
Q ss_pred cccccCCCCHHHHHHHHHHh
Q 009206 233 MTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 233 ~~~y~G~~~~~~i~~fi~~~ 252 (540)
..|.|..+.+++++.+.+.
T Consensus 179 -~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 179 -EFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred -EEEecCCCHHHHHHHHhcc
Confidence 4578999999999988764
No 284
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=95.27 E-value=0.055 Score=49.57 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=46.3
Q ss_pred hhhhhhhcCCCceEEE-EEeCC---CCCCcHHHHHHHHhhcc-CceEEEEEeeccccHHHHHHcCCCC------CCEEEE
Q 009206 268 GKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVES------APAIVF 336 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv-~f~~~---~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~~~~l~~~f~V~~------~Ptlv~ 336 (540)
+++.+.... ..+.+| |+.+. +....|.+..++..+.+ .+.|+.|+... .++++++|+|.+ .||+++
T Consensus 38 f~~~l~~~~-~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 38 LEEELERDK-RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHhcC-CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCcCCCCEEEE
Confidence 444443332 234455 55432 34456778888887753 46777776433 368999999987 999999
Q ss_pred EeCCC
Q 009206 337 LKDPG 341 (540)
Q Consensus 337 fk~~~ 341 (540)
|+++.
T Consensus 115 f~~Gk 119 (152)
T cd02962 115 FQGGK 119 (152)
T ss_pred EECCE
Confidence 99754
No 285
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.26 E-value=0.1 Score=41.70 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=47.7
Q ss_pred CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 009206 289 GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~ 362 (540)
+....+.+..++..+.....+..|+.. +.++++++||+.+.|++++ ++ . ..+.|..+.+.|.+++..
T Consensus 14 C~~~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~--~g-~--~~~~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 14 CPAAKRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI--NG-D--VEFIGAPTKEELVEAIKK 80 (82)
T ss_pred hHHHHHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE--CC-E--EEEecCCCHHHHHHHHHh
Confidence 333456777777777655666676643 3467899999999999886 33 2 357888888888888865
No 286
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=95.04 E-value=0.098 Score=45.32 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=50.1
Q ss_pred CCceEEEEEeCC----CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeee
Q 009206 277 PHKVKVIFFSKT----GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY 347 (540)
Q Consensus 277 ~~~~~vv~f~~~----~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y 347 (540)
.++++||-|+.. +....|.+..+|.+|.+.+.|..|.+.+ .+++++.|+|..-||.++|+++..-.+.|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~amPtfvffkngkh~~~d~ 85 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISYIPSTIFFFNGQHMKVDY 85 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCceeCcEEEEEECCcEEEEec
Confidence 356778866432 2334678888999886557777776543 47899999999899999999876555554
No 287
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=94.89 E-value=0.12 Score=44.88 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=41.1
Q ss_pred ceEEEEE-eCC---CCCCcHHHHHHHHhhcc---CceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC
Q 009206 279 KVKVIFF-SKT---GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 279 ~~~vv~f-~~~---~~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
++.+|.| .+. +....+.+..++..+++ .+.|+.++........++++|+|.++|++++|+++.
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC
Confidence 4555555 332 33346777778887754 345555543222235799999999999999998765
No 288
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=94.86 E-value=0.031 Score=47.83 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=55.6
Q ss_pred eeEEeCCCCccccccCCCcEEEEEEecC--CCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCcccee
Q 009206 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (540)
Q Consensus 137 ~V~~lt~~~F~~~v~~~~~~lV~FYapw--C~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V 214 (540)
....++.+++++.+......++.|..+. |..|...+=+.-|+.+.+.+....+.|.-. .+..|..+|+ +
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~---~e~~L~~r~g------v 80 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARA---AERALAARFG------V 80 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH---HHHHHHHHHT-------
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECch---hHHHHHHHhC------C
Confidence 3467888999999877666665555432 333444444666677777776677777744 3345899999 9
Q ss_pred eeeeEEEEeCCCC
Q 009206 215 RGLPSLVAFPPGC 227 (540)
Q Consensus 215 ~~~Ptl~~f~~g~ 227 (540)
..+|++++|++|.
T Consensus 81 ~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 81 RRWPALVFFRDGR 93 (107)
T ss_dssp TSSSEEEEEETTE
T ss_pred ccCCeEEEEECCE
Confidence 9999999999985
No 289
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.82 E-value=0.18 Score=44.39 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=52.2
Q ss_pred ceEEEEEe----CCCCCCcHHHHHHHHhhccCceEEEEEeeccc---------cHHHHHHcCCCC----CCEEEEEeCCC
Q 009206 279 KVKVIFFS----KTGERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVES----APAIVFLKDPG 341 (540)
Q Consensus 279 ~~~vv~f~----~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~---------~~~l~~~f~V~~----~Ptlv~fk~~~ 341 (540)
...+++|+ +.|....|.+..++... ...+.+|++.... -.++.++|++.. .||+++|+++.
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 35566663 23455678888888763 5667788765211 135677877654 99999999865
Q ss_pred CceeeecC-CCChhHHHHHHH
Q 009206 342 VKPVVYYG-SFNNSRLSEVME 361 (540)
Q Consensus 342 ~~~~~y~G-~~~~~~l~~fi~ 361 (540)
... ...| ..+.++|.+|+.
T Consensus 102 ~v~-~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 102 QVS-VRCGSSTTAQELQDIAA 121 (122)
T ss_pred EEE-EEeCCCCCHHHHHHHhh
Confidence 443 3455 556888988864
No 290
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.71 E-value=0.031 Score=43.01 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=38.3
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh-hhHHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~-~~~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
++.|+++||++|+...+.+++.. ..+-.+|...+.. ...+.+..+ ...+|++. .+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~------~~~~P~~~--~~~ 58 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSG------WPTVPQIF--ING 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhC------CCCcCEEE--ECC
Confidence 46788999999999888777654 4566778775543 233455555 66888773 354
No 291
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.61 E-value=0.045 Score=44.67 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=25.5
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccce
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANT 188 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v 188 (540)
++.|+.+.|++|..+.+...++.....+.+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~ 32 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRV 32 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEE
Confidence 46899999999999999999997555554433
No 292
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.51 E-value=0.028 Score=45.11 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=36.9
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccch-hh-hhHHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RL-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~-~~-~~~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
++.|+++||++|+.+.+.++++... ..+..++..++ .. ...+.+..+ +.++|++ |.+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g------~~~~P~v--~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTG------QRTVPNV--FIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 5789999999999999888876542 23344444432 11 122444455 7899997 5555
No 293
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.36 E-value=0.16 Score=48.37 Aligned_cols=78 Identities=10% Similarity=0.190 Sum_probs=51.3
Q ss_pred ceEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceee-----ecC
Q 009206 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-----YYG 349 (540)
Q Consensus 279 ~~~vv~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~-----y~G 349 (540)
.++||.| .+. |....+.+..+|..|. .+.|..+.+.. ...+|++...||+++|+++...... +.|
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~-----~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg 176 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ-----CIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGG 176 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHhhCCCCCCCEEEEEECCEEEEEEeCchhhCC
Confidence 4556644 332 3335678888999885 57888876433 3689999999999999986532211 122
Q ss_pred -CCChhHHHHHHHh
Q 009206 350 -SFNNSRLSEVMEQ 362 (540)
Q Consensus 350 -~~~~~~l~~fi~~ 362 (540)
.++...|..++.+
T Consensus 177 ~~~~~~~lE~~L~~ 190 (192)
T cd02988 177 MNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCHHHHHHHHHh
Confidence 4567777777654
No 294
>PRK15000 peroxidase; Provisional
Probab=94.13 E-value=0.32 Score=46.66 Aligned_cols=98 Identities=8% Similarity=0.033 Sum_probs=63.1
Q ss_pred CCCcEEEEEEe-cCCCCccCChHHHHHHHHHHhccc-ceeeeeccchhhhhHHHH----hCCC---------------Cc
Q 009206 152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAE----RKPI---------------GQ 210 (540)
Q Consensus 152 ~~~~~lV~FYa-pwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~~~~~l~~----~~~~---------------~~ 210 (540)
.++++++.||+ .||+.|..-.|.+.+.+.+++... .|..|.++........++ +.++ .+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 46789999999 599999999999999999997654 777777774322111111 1110 12
Q ss_pred cceee------eeeEEEEeCCCCCCCCCcccc----cCCCCHHHHHHHHHHh
Q 009206 211 IFFRR------GLPSLVAFPPGCKSSDCMTRF----EGELSVDAVTDWFATA 252 (540)
Q Consensus 211 ~~~V~------~~Ptl~~f~~g~~~~~~~~~y----~G~~~~~~i~~fi~~~ 252 (540)
.|.+. ++|+..++-+... ....+ .-.|+.++++..+...
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~---I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGI---VRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCE---EEEEEecCCCCCCCHHHHHHHHHHh
Confidence 34466 6898888864332 01111 2357888888887553
No 295
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.11 E-value=0.038 Score=41.82 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=36.8
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchh-hhhHHHHhCCCCccceeeeeeEEEE
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA 222 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~-~~~~l~~~~~~~~~~~V~~~Ptl~~ 222 (540)
++.|..+||++|++....+++. ...+-.+|.++++ ....+.+..+ ..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g------~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSG------VRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHS------SSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcC------CCccCEEEE
Confidence 4678899999998877555322 1367888888663 3333444446 889999875
No 296
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=94.09 E-value=0.43 Score=48.78 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=55.6
Q ss_pred hhhhhhhcCCCceEEEEEeCCCCCCcHH----------HHHHHHhh-ccCceEEEEEeeccccHHHHHHcCCCCCCEEEE
Q 009206 268 GKNFLAKTGPHKVKVIFFSKTGERASPF----------VRQISRNY-WAYASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f~~~~~~~~~~----------~~~~A~~~-~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~ 336 (540)
..+.+++.. +.+|+|.......... +..+|.-+ +..++||.|. ......+++++|+...++|++
T Consensus 44 fk~~lKkyd---~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD--~~Kd~klAKKLgv~E~~SiyV 118 (383)
T PF01216_consen 44 FKRALKKYD---VLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVD--SKKDAKLAKKLGVEEEGSIYV 118 (383)
T ss_dssp HHHHHHH-S---EEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEE--TTTTHHHHHHHT--STTEEEE
T ss_pred HHHHHHhhc---EEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEec--cHHHHHHHHhcCccccCcEEE
Confidence 466666544 6677664322211111 12233322 2345566655 333468999999999999999
Q ss_pred EeCCCCceeeecCCCChhHHHHHHHhhccCCCccccccc
Q 009206 337 LKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT 375 (540)
Q Consensus 337 fk~~~~~~~~y~G~~~~~~l~~fi~~~~~~~lp~l~~~~ 375 (540)
|+++. .+.|+|.++...|.+||-.-.-.-+..+++..
T Consensus 119 fkd~~--~IEydG~~saDtLVeFl~dl~edPVeiIn~~~ 155 (383)
T PF01216_consen 119 FKDGE--VIEYDGERSADTLVEFLLDLLEDPVEIINNKH 155 (383)
T ss_dssp EETTE--EEEE-S--SHHHHHHHHHHHHSSSEEEE-SHH
T ss_pred EECCc--EEEecCccCHHHHHHHHHHhcccchhhhcChh
Confidence 99754 56799999999999998763322233444444
No 297
>PRK13190 putative peroxiredoxin; Provisional
Probab=93.90 E-value=0.32 Score=46.71 Aligned_cols=94 Identities=12% Similarity=-0.022 Sum_probs=59.2
Q ss_pred CCcE-EEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchhhh------------------------hHHHHhC
Q 009206 153 SKPW-LIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLA------------------------THLAERK 206 (540)
Q Consensus 153 ~~~~-lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~~~------------------------~~l~~~~ 206 (540)
++.+ |+.|.+.||+.|..-.+.+.++..+++... .+..|+++..... ..+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 4434 446789999999999999999999987543 6777776632111 1233333
Q ss_pred CCCccceee------eeeEEEEeCCCCC-CCCCcccccCCCCHHHHHHHHHHh
Q 009206 207 PIGQIFFRR------GLPSLVAFPPGCK-SSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 207 ~~~~~~~V~------~~Ptl~~f~~g~~-~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+ +. .+|+..++-++.. .........+.|+.++++..+...
T Consensus 107 g------v~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 107 N------LIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred C------CccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 3 53 5899988865432 000001114578999998888664
No 298
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.099 Score=49.04 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=43.8
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--C--------cHHHHHHHHHHHHHc
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--P--------STADFLKIQYAYELL 87 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~--------~~~~f~~i~~Ay~~L 87 (540)
.+.|.+||+...++..+|+++||++....|||+-. + ..+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999632 2 256788889998754
No 299
>PTZ00051 thioredoxin; Provisional
Probab=93.61 E-value=0.33 Score=40.16 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=45.6
Q ss_pred CceEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 009206 278 HKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (540)
Q Consensus 278 ~~~~vv~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~ 353 (540)
+++.++.| .+. +....+.+..++..+. .+.|+.++.. ....++++|+|.+.|++++|+++. ....+.|. ..
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~-~~ 92 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVD--ELSEVAEKENITSMPTFKVFKNGS-VVDTLLGA-ND 92 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECc--chHHHHHHCCCceeeEEEEEeCCe-EEEEEeCC-CH
Confidence 34556655 332 2234566666777653 3556665532 236799999999999999998653 33345664 44
Q ss_pred hHHH
Q 009206 354 SRLS 357 (540)
Q Consensus 354 ~~l~ 357 (540)
++|.
T Consensus 93 ~~~~ 96 (98)
T PTZ00051 93 EALK 96 (98)
T ss_pred HHhh
Confidence 4443
No 300
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=93.54 E-value=0.034 Score=49.52 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=38.3
Q ss_pred CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhC-CCCccceeeeeeEEEEeCCC
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERK-PIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~-~~~~~~~V~~~Ptl~~f~~g 226 (540)
...-++-|..+|||.|.+.-|.+.++|+... ...+--+--+++.. +..++ ..+ ...+|+++++..+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~e---l~~~~lt~g----~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKE---LMDQYLTNG----GRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHH---HTTTTTT-S----S--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChh---HHHHHHhCC----CeecCEEEEEcCC
Confidence 4456666889999999999999999999754 33344444343333 33333 112 8899999999654
No 301
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=93.52 E-value=0.49 Score=45.24 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=35.9
Q ss_pred CCcEEEEEEe-cCCCCccCChHHHHHHHHHHhccc-ceeeeeccch
Q 009206 153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI 196 (540)
Q Consensus 153 ~~~~lV~FYa-pwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~ 196 (540)
++.++|.||+ .||++|..-.+.+.++++++.... .|..|+++..
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 5678889995 789999988899999999998654 7888887743
No 302
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.51 E-value=0.14 Score=47.33 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=42.8
Q ss_pred ccCCCcEEEEEEecCCCCccCChH-HH--HHHHHHHhcccceeeeeccchhhhhHHHHhC--------CCCccceeeeee
Q 009206 150 FHDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK--------PIGQIFFRRGLP 218 (540)
Q Consensus 150 v~~~~~~lV~FYapwC~~C~~l~p-~~--~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~--------~~~~~~~V~~~P 218 (540)
-.+++++||.++++||+-|+.|.- .| .++|..|....--.+||-++.+. +...| + .-|+|
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd---id~~y~~~~~~~~~------~gGwP 104 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD---IDKIYMNAVQAMSG------SGGWP 104 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH---HHHHHHHHHHHHHS---------SS
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc---HHHHHHHHHHHhcC------CCCCC
Confidence 357999999999999999998874 44 34677776655566788776655 33333 4 55999
Q ss_pred EEEEeCCCC
Q 009206 219 SLVAFPPGC 227 (540)
Q Consensus 219 tl~~f~~g~ 227 (540)
+.++..+..
T Consensus 105 l~vfltPdg 113 (163)
T PF03190_consen 105 LTVFLTPDG 113 (163)
T ss_dssp EEEEE-TTS
T ss_pred ceEEECCCC
Confidence 998887654
No 303
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.29 E-value=0.094 Score=42.18 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=39.3
Q ss_pred CcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 154 ~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
..-++.|..+||++|++..-.+++. | +.+-.+|++++.....+.+..| ...+|++. .+|
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----g-i~y~~idi~~~~~~~~~~~~~g------~~~vP~i~--i~g 65 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----G-YDFEEIPLGNDARGRSLRAVTG------ATTVPQVF--IGG 65 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----C-CCcEEEECCCChHHHHHHHHHC------CCCcCeEE--ECC
Confidence 3346788999999999877666532 2 3555678775544444555556 78999984 355
No 304
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.27 Score=44.63 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=57.3
Q ss_pred ccccCCCcEEEEEEecCCCCccCChHHHHH---HHHHHhcccceeeeeccc-------------hhhhhHHHHhCCCCcc
Q 009206 148 SIFHDSKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGIANTGMVELGD-------------IRLATHLAERKPIGQI 211 (540)
Q Consensus 148 ~~v~~~~~~lV~FYapwC~~C~~l~p~~~~---~A~~l~~~~~v~~Vdc~~-------------~~~~~~l~~~~~~~~~ 211 (540)
+....++..|++|-++.|..|.+|...... +-+-+.+...+..+|... .-...+|+++++
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~---- 112 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA---- 112 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc----
Confidence 334678999999999999999988765433 233344433333333321 112336899988
Q ss_pred ceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHH
Q 009206 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (540)
Q Consensus 212 ~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~ 246 (540)
|++.||+++|...+.. .-...|-...++..
T Consensus 113 --vrstPtfvFfdk~Gk~---Il~lPGY~ppe~Fl 142 (182)
T COG2143 113 --VRSTPTFVFFDKTGKT---ILELPGYMPPEQFL 142 (182)
T ss_pred --cccCceEEEEcCCCCE---EEecCCCCCHHHHH
Confidence 9999999999765331 22335766666543
No 305
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.25 E-value=0.07 Score=53.56 Aligned_cols=87 Identities=9% Similarity=0.191 Sum_probs=68.1
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~ 231 (540)
...++-+.||+.||+..+...|++.-....+....-++ .++...+....++++ +.+.|++.+-..-+
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~------~~~~ps~~~~n~t~---- 141 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYG------IHSEPSNLMLNQTC---- 141 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhccc------cccCCcceeecccc----
Confidence 46778899999999999999999988777665222222 444455555677777 88999998887654
Q ss_pred CcccccCCCCHHHHHHHHHHh
Q 009206 232 CMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 232 ~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+..|.|.++..+|++|-.+.
T Consensus 142 -~~~~~~~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 142 -PASYRGERDLASLVNFYTEI 161 (319)
T ss_pred -chhhcccccHHHHHHHHHhh
Confidence 58899999999999998776
No 306
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=93.22 E-value=0.09 Score=43.13 Aligned_cols=79 Identities=8% Similarity=0.035 Sum_probs=47.3
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchh-hhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCccc
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~-~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~ 235 (540)
++.|..|||++|.+....++++..+..+ ..+-.+|.+.+. ....+.+..+.+ +.++|+|. .+|..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~if--i~g~~------- 67 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKP----VETVPQIF--VDEKH------- 67 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEE--ECCEE-------
Confidence 5778899999999888777665433222 346666666322 122244554422 47999984 45521
Q ss_pred ccCCCCHHHHHHHHHHh
Q 009206 236 FEGELSVDAVTDWFATA 252 (540)
Q Consensus 236 y~G~~~~~~i~~fi~~~ 252 (540)
-| ..++|.+++.+.
T Consensus 68 -ig--G~~dl~~~~~~~ 81 (86)
T TIGR02183 68 -VG--GCTDFEQLVKEN 81 (86)
T ss_pred -ec--CHHHHHHHHHhc
Confidence 22 247888887664
No 307
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.16 E-value=0.14 Score=44.49 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=60.3
Q ss_pred cccc--cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeC
Q 009206 147 PSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (540)
Q Consensus 147 ~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~ 224 (540)
++.| .+.+.++|-|=-+|.+.|.++-....++|..+...+.|.-||.++-+. +.+-++ +...||+++|-
T Consensus 15 dqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~---~~~~~~------l~~p~tvmfFf 85 (142)
T KOG3414|consen 15 DQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD---FVKMYE------LYDPPTVMFFF 85 (142)
T ss_pred HHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh---hhhhhc------ccCCceEEEEE
Confidence 4455 467889999999999999999999999999999988999999994443 555555 88999999998
Q ss_pred CCC
Q 009206 225 PGC 227 (540)
Q Consensus 225 ~g~ 227 (540)
+++
T Consensus 86 n~k 88 (142)
T KOG3414|consen 86 NNK 88 (142)
T ss_pred cCc
Confidence 774
No 308
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.056 Score=50.72 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=47.8
Q ss_pred ccccccCccCCCC--HHHHHHHHHHHHHhcCCCCCCCc--------HHHHHHHHHHHHHcCChhhhhhhhh
Q 009206 38 SHYDALGIKPYSS--VEQVKEAYEKFSSKWNSGEEIPS--------TADFLKIQYAYELLTDPLWKRNYDV 98 (540)
Q Consensus 38 ~~y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~r~~yd~ 98 (540)
|++..+|..+.+. .+.++..|+.+.+.+|||+...+ .+.+..++.||.+|.+|-.|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4556666666554 35589999999999999986522 2358899999999999999999854
No 309
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=92.89 E-value=1.1 Score=38.60 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=51.7
Q ss_pred CCceEEEEEeCCCCCC-cHHHH------HHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeC-CCCceeeec
Q 009206 277 PHKVKVIFFSKTGERA-SPFVR------QISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKD-PGVKPVVYY 348 (540)
Q Consensus 277 ~~~~~vv~f~~~~~~~-~~~~~------~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~-~~~~~~~y~ 348 (540)
.+++.+|++.+..... ..+.+ .+...+.....+..+...+.+...++..|++.++|+++++.. .+..-....
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~ 95 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWS 95 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEc
Confidence 4678787775432111 11111 133333333333444433334467999999999999999987 455444568
Q ss_pred CCCChhHHHHHHHh
Q 009206 349 GSFNNSRLSEVMEQ 362 (540)
Q Consensus 349 G~~~~~~l~~fi~~ 362 (540)
|..+.+.+...+++
T Consensus 96 G~~~~~~f~~~L~~ 109 (114)
T cd02958 96 GNITPEDLLSQLIE 109 (114)
T ss_pred CCCCHHHHHHHHHH
Confidence 99888887777665
No 310
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.87 E-value=0.3 Score=53.93 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=63.1
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCC
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~ 231 (540)
+...-+--|++|.|++|....-.+.++|..-. .+..-.+|+.+.+. ++++|+ |.++|++++ ++.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~---~~~~~~------v~~VP~~~i--~~~---- 179 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQD---EVEALG------IQGVPAVFL--NGE---- 179 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHH---HHHhcC------CcccCEEEE--CCc----
Confidence 34556888999999999888877777776543 44566688886665 889998 999999965 443
Q ss_pred CcccccCCCCHHHHHHHHHHh
Q 009206 232 CMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 232 ~~~~y~G~~~~~~i~~fi~~~ 252 (540)
..+.|..+.+.+++.+.+.
T Consensus 180 --~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 180 --EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred --EEEecCCCHHHHHHHHhhc
Confidence 4578989999888777554
No 311
>PRK10329 glutaredoxin-like protein; Provisional
Probab=92.81 E-value=0.13 Score=41.77 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=47.8
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccc
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y 236 (540)
++.|..+||++|++..-.+++ .| +.+-.+|.++++......+..| ...+|++++ ++. .
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g------~~~vPvv~i--~~~-------~- 60 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQG------FRQLPVVIA--GDL-------S- 60 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcC------CCCcCEEEE--CCE-------E-
Confidence 456778999999886655533 12 3677888886665444444455 779999965 331 1
Q ss_pred cCCCCHHHHHHHHHHh
Q 009206 237 EGELSVDAVTDWFATA 252 (540)
Q Consensus 237 ~G~~~~~~i~~fi~~~ 252 (540)
-++...+.|.+.+...
T Consensus 61 ~~Gf~~~~l~~~~~~~ 76 (81)
T PRK10329 61 WSGFRPDMINRLHPAP 76 (81)
T ss_pred EecCCHHHHHHHHHhh
Confidence 2356678887776543
No 312
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.74 E-value=0.12 Score=46.51 Aligned_cols=31 Identities=3% Similarity=0.144 Sum_probs=26.5
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHH
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL 182 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l 182 (540)
+.++.++.|+.++|+||+++.|.++++....
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 3567899999999999999999998876554
No 313
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=92.59 E-value=0.23 Score=53.58 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=28.5
Q ss_pred ccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 009206 40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP 72 (540)
Q Consensus 40 y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~ 72 (540)
++=.++..=.+.++||++|||-.+..||||-++
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq 423 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQ 423 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccC
Confidence 555677777899999999999999999999764
No 314
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=92.53 E-value=0.47 Score=40.10 Aligned_cols=95 Identities=8% Similarity=0.083 Sum_probs=65.9
Q ss_pred EEe-CCCCcccccc-CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeee
Q 009206 139 NVV-TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (540)
Q Consensus 139 ~~l-t~~~F~~~v~-~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~ 216 (540)
..| +.++.+.++. ++.+.+|=|+..--+ .....|.++|..+.....++...-. . +...++ + .
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~-~ 66 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS---K---VAKKLG------L-K 66 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH---H---HHHHcC------C-C
Confidence 344 3445777787 777888877765333 4566899999999766677665543 2 556665 5 4
Q ss_pred eeEEEEeCCCCCCCCCcccc-cCCCCHHHHHHHHHHh
Q 009206 217 LPSLVAFPPGCKSSDCMTRF-EGELSVDAVTDWFATA 252 (540)
Q Consensus 217 ~Ptl~~f~~g~~~~~~~~~y-~G~~~~~~i~~fi~~~ 252 (540)
.|+++++++... ....| .|..+.+.|.+|+...
T Consensus 67 ~~~i~l~~~~~e---~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 67 MNEVDFYEPFME---EPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCcEEEeCCCCC---CCcccCCCCCCHHHHHHHHHHh
Confidence 799999987322 24568 7888999999998653
No 315
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=92.45 E-value=0.34 Score=41.24 Aligned_cols=92 Identities=15% Similarity=0.257 Sum_probs=63.0
Q ss_pred CCccccccCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEe
Q 009206 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (540)
Q Consensus 144 ~~F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f 223 (540)
++.+.++...++.+|=|+..--+ .....|.++|..+.....++...-. . +..+++ + .|++++|
T Consensus 9 ~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~--~~~ivl~ 71 (104)
T cd03069 9 AEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q---LLEKYG------Y--GEGVVLF 71 (104)
T ss_pred HHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H---HHHhcC------C--CCceEEE
Confidence 34556666777788877765333 4677999999999766677766544 2 556666 7 6899999
Q ss_pred CCCC--CC-CCCcccccCCCCHHHHHHHHHHh
Q 009206 224 PPGC--KS-SDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 224 ~~g~--~~-~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
++.. ++ ......|.|..+.+.|.+|+...
T Consensus 72 ~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 72 RPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred echhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 5421 00 01235699999999999998754
No 316
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=92.40 E-value=0.64 Score=39.05 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=56.4
Q ss_pred hhhhhhhcCCCceEEEEEeCCCCCCcH---HHHHHHHhhccCceEEEEEeeccccHHHHHHcCCC----CCC-EEEEEeC
Q 009206 268 GKNFLAKTGPHKVKVIFFSKTGERASP---FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE----SAP-AIVFLKD 339 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f~~~~~~~~~---~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~----~~P-tlv~fk~ 339 (540)
+...+.. .+.+.++|..+..+ ... .++.+|...++.-..++|.-.+.+...||++++|. ..| +|.-|++
T Consensus 12 fKKLLRT--r~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKd 88 (112)
T cd03067 12 FKKLLRT--RNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKD 88 (112)
T ss_pred HHHHHhh--cCcEEEEEecchhh-HHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccC
Confidence 3444443 34566666644322 233 34557777766655555554444457899999998 455 4556776
Q ss_pred CCCceeeecCCCChhHHHHHHHh
Q 009206 340 PGVKPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 340 ~~~~~~~y~G~~~~~~l~~fi~~ 362 (540)
++- ...|+-.++..+|.+||+.
T Consensus 89 G~f-HkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 89 GDF-HTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CCc-cccccchhhHHHHHHHhhC
Confidence 543 3468888888899999864
No 317
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.83 E-value=4.4 Score=44.70 Aligned_cols=173 Identities=11% Similarity=0.062 Sum_probs=94.9
Q ss_pred CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCC
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~ 232 (540)
..++-+.+|.+.|..|..+....++++..- +. |.+..... -...|++.+..+|.. .
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~-----i~~~~~~~---------------~~~~p~~~~~~~~~~---~ 73 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLS-DK-----ITVEEDSL---------------DVRKPSFSITRPGED---T 73 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhC-Cc-----eEEEEccC---------------CCCCCEEEEEcCCcc---c
Confidence 445555555557999988887777776543 22 22221110 113699999876643 3
Q ss_pred cccccCCCCHHHHHHHHHHhhh-cCCcccccccchhhhhhhhhcCCCceEEE-EEeCCCC-CCc--HHHHHHHHhhccCc
Q 009206 233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGE-RAS--PFVRQISRNYWAYA 307 (540)
Q Consensus 233 ~~~y~G~~~~~~i~~fi~~~v~-~lp~~~~i~~~~~~~~fl~~~~~~~~~vv-~f~~~~~-~~~--~~~~~~A~~~~~~~ 307 (540)
...|.|--.-..+-.|+...+. +.+... ++ +. ..+.+.... ..+.+. |.+.+|. |+. ..+..+|.. ...+
T Consensus 74 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~-~~-~~~~i~~~~-~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i 148 (517)
T PRK15317 74 GVRFAGIPMGHEFTSLVLALLQVGGHPPK-LD-QE-VIEQIKALD-GDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNI 148 (517)
T ss_pred eEEEEecCccHHHHHHHHHHHHhcCCCCC-CC-HH-HHHHHHhcC-CCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCc
Confidence 4788887777777777765422 222222 22 12 122333321 123333 4444432 221 222334442 2333
Q ss_pred eEEEEEeecc-ccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 009206 308 SFAFVLWREE-ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 308 ~f~~v~~~~~-~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~ 362 (540)
.+-.+ +. ..++++++|++.+.|++++ ++. ..+.|..+.++|.+.+..
T Consensus 149 ~~~~i---d~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 149 THTMI---DGALFQDEVEARNIMAVPTVFL---NGE--EFGQGRMTLEEILAKLDT 196 (517)
T ss_pred eEEEE---EchhCHhHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhc
Confidence 33333 33 3388999999999999876 222 357888888877777765
No 318
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.65 E-value=0.2 Score=46.41 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=31.9
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHHHHHHhccccee
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG 189 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~ 189 (540)
..++.+++|+.+.|+||+++.+.+.++.+++.+.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 67889999999999999999999999888775544443
No 319
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=91.61 E-value=0.96 Score=45.58 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=53.3
Q ss_pred ceEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEeecc---------ccHHHHHHcCCCCCCEEEEEeCCCC-ce
Q 009206 279 KVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGV-KP 344 (540)
Q Consensus 279 ~~~vv~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~---------~~~~l~~~f~V~~~Ptlv~fk~~~~-~~ 344 (540)
++.+++| .+ .|....|.+..++..|. +.+..|..... ....++++|||...|+++++.+++. ..
T Consensus 167 k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 167 KSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 3545544 33 23445678888888773 45555554321 1245889999999999999987433 22
Q ss_pred eeecCCCChhHHHHHHHh
Q 009206 345 VVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 345 ~~y~G~~~~~~l~~fi~~ 362 (540)
.+..|.++.++|.+.|..
T Consensus 245 ~v~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 245 PIGFGVMSADELVDRILL 262 (271)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 335688888888888754
No 320
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=91.54 E-value=0.2 Score=42.69 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHH
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi 360 (540)
..+.+.+||.+.||++++...+.....+.|..+.++|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 45899999999999999965555444578999988887764
No 321
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=91.49 E-value=0.55 Score=40.52 Aligned_cols=69 Identities=9% Similarity=-0.023 Sum_probs=50.6
Q ss_pred cHHHHHHHHh---hccCceEEEEEeeccccHHHHHHcCCCC--CCEEEEEeCCCCceee-ecCCCChhHHHHHHHhh
Q 009206 293 SPFVRQISRN---YWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVV-YYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 293 ~~~~~~~A~~---~~~~~~f~~v~~~~~~~~~l~~~f~V~~--~Ptlv~fk~~~~~~~~-y~G~~~~~~l~~fi~~~ 363 (540)
...++.+|.. +++.+.|+.+...+. ....+.||++. .|++++....+..... +.+.++.+.|..|++..
T Consensus 33 ~~~~~~vAk~~~~~kgki~Fv~~d~~~~--~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 33 KEFKQAVARQLISEKGAINFLTADGDKF--RHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEechHh--hhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHH
Confidence 3456779999 998888888875433 34899999996 7999988754322222 46788999999999864
No 322
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=91.33 E-value=0.37 Score=42.60 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=39.6
Q ss_pred ccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChh
Q 009206 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPL 91 (540)
Q Consensus 38 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~ 91 (540)
.-..||||++..+.++|.+.|.+|-...+|+++ |+.---.+|..|.+.|..+.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999986 66666778888998886444
No 323
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=91.28 E-value=0.58 Score=44.96 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=34.1
Q ss_pred cEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccc
Q 009206 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (540)
Q Consensus 155 ~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~ 195 (540)
.+|+.|.+.||+.|..-.+.+.+++.+++... .|..|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45667889999999999999999999997654 777777774
No 324
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=91.22 E-value=0.49 Score=47.46 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=44.6
Q ss_pred cHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceee-----e-cCCCChhHHHHHHHhhc
Q 009206 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-----Y-YGSFNNSRLSEVMEQNK 364 (540)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~-----y-~G~~~~~~l~~fi~~~~ 364 (540)
...+..+|..|. .++|..+....+. +..+|.+...|||++|+++...... . ...++..+|..|+.++.
T Consensus 165 n~~L~~LA~kyp-~vKFvkI~a~~~~---~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 165 NSCLECLARKYP-EVKFVKIRASKCP---ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp HHHHHHHHHH-T-TSEEEEEEECGCC---TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred HHHHHHHHHhCC-ceEEEEEehhccC---cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 445677898884 6889888876553 6678999999999999976533221 1 22467788999998754
No 325
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=91.07 E-value=1.1 Score=39.13 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHhhccCceEEEEEeecc-----ccHHHHHHcCCC-CCCEEEEEeCC
Q 009206 291 RASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVE-SAPAIVFLKDP 340 (540)
Q Consensus 291 ~~~~~~~~~A~~~~~~~~f~~v~~~~~-----~~~~l~~~f~V~-~~Ptlv~fk~~ 340 (540)
...|.+..++.++.+...|..|.+.+. ....+..+++|. +.||+++|+.+
T Consensus 45 ~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 45 KAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred hhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 346788888888876788888886542 135799999998 99999999754
No 326
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.47 E-value=0.33 Score=38.17 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=42.4
Q ss_pred EEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCccccc
Q 009206 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (540)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~ 237 (540)
+.|..++|+.|++....+++. .+.+-.+|.++++.......+.| ..++|++++ +|. ..-
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g------~~~vP~v~~--~g~-------~~~ 60 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQG------FRQVPVIVA--DGD-------LSW 60 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcC------CcccCEEEE--CCC-------cEE
Confidence 456679999998877655431 23677788886654433344446 779999754 342 123
Q ss_pred CCCCHHHHHH
Q 009206 238 GELSVDAVTD 247 (540)
Q Consensus 238 G~~~~~~i~~ 247 (540)
|+.+.+.|.+
T Consensus 61 ~G~~~~~~~~ 70 (72)
T TIGR02194 61 SGFRPDKLKA 70 (72)
T ss_pred eccCHHHHHh
Confidence 4455666544
No 327
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.39 E-value=10 Score=41.91 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=90.5
Q ss_pred CCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCC
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~ 232 (540)
..++-+.++.+.|..|..+....++++..- +...+ .... .+ ....|++.+..+|.. .
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~-----~~~~--------~~------~~~~p~~~~~~~~~~---~ 74 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISL-----TQNT--------AD------TLRKPSFTILRDGAD---T 74 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEE-----EEec--------CC------cCCCCeEEEecCCcc---c
Confidence 344444444446888877776666665432 22222 2111 01 235699998876642 3
Q ss_pred cccccCCCCHHHHHHHHHHhhh-cCCcccccccchhhhhhhhhcCCCceEEE-EEeCCCC-CCc--HHHHHHHHhhccCc
Q 009206 233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGE-RAS--PFVRQISRNYWAYA 307 (540)
Q Consensus 233 ~~~y~G~~~~~~i~~fi~~~v~-~lp~~~~i~~~~~~~~fl~~~~~~~~~vv-~f~~~~~-~~~--~~~~~~A~~~~~~~ 307 (540)
..+|.|--.-..+..|+...+. +.+... ++. +.. +.+...+ ..+.+. |.+.+|. |+. ..+..++... ..+
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~~-~~~-~~~~~~~-~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i 149 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVGGHGPK-LDE-GII-DRIRRLN-GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNI 149 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhcCCCCC-CCH-HHH-HHHHhcC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCc
Confidence 5788887777777777765321 222221 222 212 2233321 123333 4444432 221 1222233321 233
Q ss_pred eEEEEEeecc-ccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 009206 308 SFAFVLWREE-ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 308 ~f~~v~~~~~-~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~ 362 (540)
. ..+.+. ..++++++|++.+.|++++ ++. ..+.|..+.+.+.+.+..
T Consensus 150 ~---~~~id~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 150 S---HTMIDGALFQDEVEALGIQGVPAVFL---NGE--EFHNGRMDLAELLEKLEE 197 (515)
T ss_pred e---EEEEEchhCHHHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhh
Confidence 3 333343 3388999999999999886 222 347788777777666543
No 328
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=90.37 E-value=0.87 Score=39.34 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=48.1
Q ss_pred HHHHHHHHhhc-cCceEEEEEeeccccHHHHHHcCCCC----CCEEEEEeCCCCceeeecCCC-ChhHHHHHHHh
Q 009206 294 PFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVES----APAIVFLKDPGVKPVVYYGSF-NNSRLSEVMEQ 362 (540)
Q Consensus 294 ~~~~~~A~~~~-~~~~f~~v~~~~~~~~~l~~~f~V~~----~Ptlv~fk~~~~~~~~y~G~~-~~~~l~~fi~~ 362 (540)
..++.+|..|+ +.+.|+.+...+. ....+.||++. .|+++++...+.+. ...+++ +.+.|.+|++.
T Consensus 38 ~~~~~vAk~fk~gki~Fv~~D~~~~--~~~l~~fgl~~~~~~~P~~~i~~~~~~KY-~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 38 NRVLKVAKDFPDRKLNFAVADKEDF--SHELEEFGLDFSGGEKPVVAIRTAKGKKY-VMEEEFSDVDALEEFLED 109 (111)
T ss_pred HHHHHHHHHCcCCeEEEEEEcHHHH--HHHHHHcCCCcccCCCCEEEEEeCCCCcc-CCCcccCCHHHHHHHHHH
Confidence 34566999999 6888888764432 34888999984 79999987543222 146778 88999999976
No 329
>PRK13191 putative peroxiredoxin; Provisional
Probab=90.26 E-value=1.6 Score=42.37 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=34.6
Q ss_pred CCc-EEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccch
Q 009206 153 SKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI 196 (540)
Q Consensus 153 ~~~-~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~ 196 (540)
++. +|+.|.++||+.|..-.+.+.+.+.+++... .|..|+++..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 343 4446779999999999999999999997654 7888887744
No 330
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=90.20 E-value=1.4 Score=40.61 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=36.1
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhh
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
..+.+.|++...|+++++.+.+.....+.|..+.+++.++++..
T Consensus 128 ~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 128 RQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred chHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 56889999999999999976665555678888888999998764
No 331
>PRK13189 peroxiredoxin; Provisional
Probab=90.01 E-value=0.9 Score=44.34 Aligned_cols=41 Identities=10% Similarity=-0.028 Sum_probs=32.5
Q ss_pred cEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccc
Q 009206 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (540)
Q Consensus 155 ~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~ 195 (540)
.+|+.|.+.||+.|..-.+.+.+++.+++... .|..|.++.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 44556679999999999999999999997553 677777764
No 332
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=89.93 E-value=0.36 Score=37.80 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=42.5
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccc
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y 236 (540)
++.|..+||+.|.+..-.+.+. .+.+-.+|.+++.....+.+..| ...+|.| |.+|..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g------~~~vP~i--fi~g~~-------- 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTG------AMTVPQV--FIDGEL-------- 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhC------CCCcCeE--EECCEE--------
Confidence 5678889999998875544421 13566777775543333444445 7799997 555531
Q ss_pred cCCCCHHHHHHHH
Q 009206 237 EGELSVDAVTDWF 249 (540)
Q Consensus 237 ~G~~~~~~i~~fi 249 (540)
-| ..++|.+|+
T Consensus 61 ig--g~~~l~~~l 71 (72)
T cd03029 61 IG--GSDDLEKYF 71 (72)
T ss_pred Ee--CHHHHHHHh
Confidence 23 256777664
No 333
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=89.67 E-value=1.4 Score=37.84 Aligned_cols=69 Identities=26% Similarity=0.348 Sum_probs=45.1
Q ss_pred hhhhhhhcCCCceEEEEEeCCCCC----C--cHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC
Q 009206 268 GKNFLAKTGPHKVKVIFFSKTGER----A--SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f~~~~~~----~--~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
++.|+...+ ..|+||.+...+ . ...+=.+.+.+......+.+. ......|..+||+...|++++|+++.
T Consensus 19 ld~~l~~~~---~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 19 LDAFLAAPG---DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGR 93 (107)
T ss_dssp HHHHHHCCS---CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTE
T ss_pred HHHHHhCCC---cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCE
Confidence 688887644 567888654322 1 123334666776666655555 23346899999999999999999754
No 334
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=89.66 E-value=0.77 Score=45.93 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=36.8
Q ss_pred CCcEEEEEE-ecCCCCccCChHHHHHHHHHHhccc-ceeeeeccch
Q 009206 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI 196 (540)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~ 196 (540)
++++++.|| +.||+.|..-.|.+.+...+++..+ .|..|.++..
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~ 143 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP 143 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 457777788 8999999999999999999997654 7888888753
No 335
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=89.23 E-value=2.9 Score=45.64 Aligned_cols=175 Identities=15% Similarity=0.173 Sum_probs=92.6
Q ss_pred eCCCCCCcHHHHHHHHhhccCceEEEEEeecccc---HHHHHHcCCCCCCEEEEEeCCCCc---eeeecCCCChhHHHHH
Q 009206 286 SKTGERASPFVRQISRNYWAYASFAFVLWREEES---SIWWNTFEVESAPAIVFLKDPGVK---PVVYYGSFNNSRLSEV 359 (540)
Q Consensus 286 ~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~---~~l~~~f~V~~~Ptlv~fk~~~~~---~~~y~G~~~~~~l~~f 359 (540)
+++|-...|.++.+|.....-..+..|...+|.. ..+|.+|+|..+|+|.+|+.+... ...+.|....+++.+.
T Consensus 69 CGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~ 148 (606)
T KOG1731|consen 69 CGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQ 148 (606)
T ss_pred hhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHH
Confidence 3455567899999999877767778888888843 679999999999999999875322 1234454444555555
Q ss_pred HH--------hhccCCCc---cccccchhhhccCCCCCCCCCCCCceeEEEEEecCCC--hhhHHHHHHH--HHHHHhhc
Q 009206 360 ME--------QNKLQELP---QLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLS--PELNKMRETI--RRVQETLL 424 (540)
Q Consensus 360 i~--------~~~~~~lp---~l~~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~~~--~~~~~~~~~l--~~~~~~~~ 424 (540)
+. .|..|.-| .+...+..+++-.. . +..+.|..|++-... -..+.+...+ ++++-...
T Consensus 149 l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~--~-----~~~~~yvAiv~e~~~s~lg~~~~l~~l~~~~v~vr~~ 221 (606)
T KOG1731|consen 149 LIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEG--I-----STTANYVAIVFETEPSDLGWANLLNDLPSKQVGVRAR 221 (606)
T ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcc--c-----ccccceeEEEEecCCcccHHHHHHhhccCCCcceEEE
Confidence 42 23333333 45555543332211 1 122236666562222 1222222222 11111000
Q ss_pred cccc-cccccccCCchHHHHhccCCceEEEEEechhhHHHHHhh
Q 009206 425 SDDE-SNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFY 467 (540)
Q Consensus 425 ~~~~-~~~~~~~~~~~~~A~~~~~~~~~f~wvd~~~q~~f~~~~ 467 (540)
.... -+.....+.....|.-++.+.....|+-...-..+++.+
T Consensus 222 ~d~q~~~~~~l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I 265 (606)
T KOG1731|consen 222 LDTQNFPLFGLKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKI 265 (606)
T ss_pred ecchhccccccCCCCchhhhhhcCCcccccccccccHHHHHHHH
Confidence 0000 001123444445556677777788887665544555544
No 336
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=89.20 E-value=1.3 Score=49.42 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=45.1
Q ss_pred HHHhhccCceEEEEEeecc--ccHHHHHHcCCCCCCEEEEEeCCCCc--eeeecCCCChhHHHHHHHh
Q 009206 299 ISRNYWAYASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVK--PVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 299 ~A~~~~~~~~f~~v~~~~~--~~~~l~~~f~V~~~Ptlv~fk~~~~~--~~~y~G~~~~~~l~~fi~~ 362 (540)
+...++ ...+..+++.+. +.++++++|++.+.|++++|+.+++. ...+.|..+.+++.+++++
T Consensus 502 v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 502 VQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred HHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 334443 456667766543 23679999999999999999755543 2346888899999998876
No 337
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=89.04 E-value=0.56 Score=36.78 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=35.1
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh-hhHHHHhCCCCccceee-eeeEEEEeCCC
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRR-GLPSLVAFPPG 226 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~-~~~l~~~~~~~~~~~V~-~~Ptl~~f~~g 226 (540)
++.|..+||++|.+....+++. + ..+-.+|++.++. ...+-+..+ .. ++|+| |.+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~i~i~~~~~~~~~~~~~~~------~~~~vP~v--~i~g 59 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----G-VDYEEIDVDGDPALREEMINRSG------GRRTVPQI--FIGD 59 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----C-CcEEEEECCCCHHHHHHHHHHhC------CCCccCEE--EECC
Confidence 4667789999999877666542 2 3566777775432 222334445 44 89987 4454
No 338
>PRK13599 putative peroxiredoxin; Provisional
Probab=88.66 E-value=0.83 Score=44.36 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=36.1
Q ss_pred cEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchh
Q 009206 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIR 197 (540)
Q Consensus 155 ~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~ 197 (540)
.+|+.|.+.||+.|..-.+.+.++..+++... .+..|+++...
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~ 74 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVF 74 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 35678889999999999999999999997654 88888988543
No 339
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=88.62 E-value=0.35 Score=38.59 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=35.4
Q ss_pred EEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh-hhHHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~-~~~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
+.|..|||++|.+....+++.. ..+-.+|++.++. ...+.+..+ ..++|+| |.+|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~di~~~~~~~~~~~~~~g------~~~vP~i--~i~g 57 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKG------VTFTEIRVDGDPALRDEMMQRSG------RRTVPQI--FIGD 57 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcC------CCcEEEEecCCHHHHHHHHHHhC------CCCcCEE--EECC
Confidence 4577899999999887776532 2556666664432 223444445 7799997 4455
No 340
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.06 E-value=0.78 Score=36.02 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=34.3
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhh-hhHHHHhCCCCccceeeeeeEE
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSL 220 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~-~~~l~~~~~~~~~~~V~~~Ptl 220 (540)
++.|+.|||++|++..-.+++. + +.+-.+|+.+++. ...+.+..+ -..+|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----g-i~~~~~di~~~~~~~~el~~~~g------~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----G-LPYVEINIDIFPERKAELEERTG------SSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----C-CceEEEECCCCHHHHHHHHHHhC------CCCcCEE
Confidence 5678899999998877666542 1 3567778875443 223444445 5688987
No 341
>smart00594 UAS UAS domain.
Probab=87.23 E-value=4.1 Score=35.57 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=36.5
Q ss_pred ceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC-Cc--ee--eecCCCChhHHHHHH
Q 009206 307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VK--PV--VYYGSFNNSRLSEVM 360 (540)
Q Consensus 307 ~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~-~~--~~--~y~G~~~~~~l~~fi 360 (540)
..+..+.+.+.+...+++.|++.++|+++++...+ .. .+ ...|..+.++|..++
T Consensus 63 fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 63 FIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 33333444444447899999999999999997654 21 11 247888888877664
No 342
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.98 E-value=2.9 Score=41.03 Aligned_cols=72 Identities=21% Similarity=0.175 Sum_probs=54.1
Q ss_pred CCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhh
Q 009206 287 KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 287 ~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
.-|+..+|.+..+|.+|. ...|..|++..| +..+..+||+.-||.++|+++.. -..+.|. +...|++-+.++
T Consensus 34 GPCk~IaP~Fs~lankYp-~aVFlkVdVd~c--~~taa~~gV~amPTFiff~ng~k-id~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 34 GPCKRIAPIFSDLANKYP-GAVFLKVDVDEC--RGTAATNGVNAMPTFIFFRNGVK-IDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred chHHhhhhHHHHhhhhCc-ccEEEEEeHHHh--hchhhhcCcccCceEEEEecCeE-eeeecCC-CHHHHHHHHHHH
Confidence 345677899999999984 556777877666 46889999999999999996543 3346676 666777777665
No 343
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=86.64 E-value=0.7 Score=39.00 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=34.8
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhH----HHHhCCCCccceeeeeeEEEEeCCC
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH----LAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~----l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
++.|-.|||++|.+....+.+.. ..+..+|.++++.... +.+..| ...+|+| |.+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg------~~tvP~V--fi~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGC------SPAVPAV--FVGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcC------CCCcCeE--EECC
Confidence 56788899999988776554431 2455677765433222 333334 6789987 5555
No 344
>PRK10638 glutaredoxin 3; Provisional
Probab=86.15 E-value=0.89 Score=36.75 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=33.7
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchh-hhhHHHHhCCCCccceeeeeeEEE
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLV 221 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~-~~~~l~~~~~~~~~~~V~~~Ptl~ 221 (540)
++.|..+||++|++..-.+++. + +.+..+|+++++ ....+.+..| ...+|+|.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g-i~y~~~dv~~~~~~~~~l~~~~g------~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G-VSFQEIPIDGDAAKREEMIKRSG------RTTVPQIF 57 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C-CCcEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence 3455669999998877555542 2 256677877554 2233455556 67899873
No 345
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=86.14 E-value=0.63 Score=44.81 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=30.3
Q ss_pred CCcEEEEEEecCCCCccCChHHH---HHHHHHHhcccceeeeec
Q 009206 153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVEL 193 (540)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~~~v~~Vdc 193 (540)
+++-+|+|++..|+||.++.|.+ +.+.+.+.+.+.+..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 35679999999999999999865 667777655444444443
No 346
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=86.08 E-value=1 Score=42.63 Aligned_cols=102 Identities=16% Similarity=0.272 Sum_probs=67.0
Q ss_pred eeEEeCCCCccccc--cCCC-cEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccce
Q 009206 137 AFNVVTSEDFPSIF--HDSK-PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (540)
Q Consensus 137 ~V~~lt~~~F~~~v--~~~~-~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (540)
.|..++..+|...| .+.. .++|..|...-+.|.-+.-.+..+|..+... +|.++=.+ . +-..|+
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~i-KFVki~at---~---cIpNYP------ 158 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQI-KFVKIPAT---T---CIPNYP------ 158 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcc-eEEecccc---c---ccCCCc------
Confidence 57888888888777 3444 4567899999999999999999999888543 45544433 1 223344
Q ss_pred eeeeeEEEEeCCCCCC--CCCcccccCCC-CHHHHHHHHHH
Q 009206 214 RRGLPSLVAFPPGCKS--SDCMTRFEGEL-SVDAVTDWFAT 251 (540)
Q Consensus 214 V~~~Ptl~~f~~g~~~--~~~~~~y~G~~-~~~~i~~fi~~ 251 (540)
=.-.|||++|..|... ..-+..+.|.+ +.+++-.++-+
T Consensus 159 e~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 159 ESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred ccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 5689999999988531 11122344544 45555555444
No 347
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=85.52 E-value=0.68 Score=42.03 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=32.8
Q ss_pred cCCCcEEEEEEecCCCCccCChHHHHHHHHHH--hcccceeeeec
Q 009206 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVEL 193 (540)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l--~~~~~v~~Vdc 193 (540)
.+.++.+++|+.+.|+||.++.+...++.+.+ .+.+.+.-++.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 35678899999999999999999999888887 55555554444
No 348
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=85.50 E-value=2.6 Score=38.56 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=42.1
Q ss_pred CcEEEEEE-ecCCCCccCC-hHHHHHHHHHHhccc--ceeeeeccchhhhhHHHHhCC
Q 009206 154 KPWLIQVY-SDGSYLCGQF-SGAWKTIAALLEGIA--NTGMVELGDIRLATHLAERKP 207 (540)
Q Consensus 154 ~~~lV~FY-apwC~~C~~l-~p~~~~~A~~l~~~~--~v~~Vdc~~~~~~~~l~~~~~ 207 (540)
+++++.|| +.||+.|..- .+.+.+...++...+ .|..|.++........+++.+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~ 87 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALG 87 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhC
Confidence 45555555 7899999997 999999999997654 488899887666666778876
No 349
>PHA03050 glutaredoxin; Provisional
Probab=85.34 E-value=0.62 Score=40.07 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=35.8
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccc---hhh-hhHHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD---IRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~---~~~-~~~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
++.|..+||++|++....+++..-.. ..+-.+|.++ ... ...+-+.-| ...+|+| |.+|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG------~~tVP~I--fI~g 77 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITG------GRTVPRI--FFGK 77 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcC------CCCcCEE--EECC
Confidence 67788999999988776665543111 1355666663 111 222444445 6799998 4444
No 350
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=84.99 E-value=5.6 Score=34.14 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=29.6
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHH
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE 358 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~ 358 (540)
..+++.|+|.+.|+++++.+++ ....+.|..+.+.|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 4699999999999999998766 4445678777777643
No 351
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=84.79 E-value=0.83 Score=36.91 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=51.9
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccc
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y 236 (540)
++.|..|.|+-|..+.....+++.. ....+-.||.++++. +-.+|+ . .+|.|.+=..+.. ......
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d~~---l~~~Y~------~-~IPVl~~~~~~~~--~~~~~~ 67 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDEDPE---LFEKYG------Y-RIPVLHIDGIRQF--KEQEEL 67 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTTHH---HHHHSC------T-STSEEEETT-GGG--CTSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCCHH---HHHHhc------C-CCCEEEEcCcccc--ccccee
Confidence 6788899999998776666554322 224799999997766 788987 3 6888655432111 112344
Q ss_pred cCCCCHHHHHHHHH
Q 009206 237 EGELSVDAVTDWFA 250 (540)
Q Consensus 237 ~G~~~~~~i~~fi~ 250 (540)
.+..+.+.|.+|+.
T Consensus 68 ~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 68 KWRFDEEQLRAWLE 81 (81)
T ss_dssp ESSB-HHHHHHHHH
T ss_pred CCCCCHHHHHHHhC
Confidence 67888999988873
No 352
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=84.40 E-value=1.2 Score=36.81 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=31.8
Q ss_pred cCCCCccCChHHHHHHHHHHhcccceeeeeccchhhh-hHHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 163 pwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~-~~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
|||++|++....+.+.. +.+-.+|..+++.. ..|.+..| ...+|+| |.+|
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g------~~tvP~v--fi~g 71 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSN------WPTFPQL--YVNG 71 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhC------CCCCCEE--EECC
Confidence 79999988665554432 36777777655443 33444445 6789997 5555
No 353
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=83.60 E-value=1.6 Score=43.40 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.1
Q ss_pred CCCcEEEEEEecCCCCccCChHHHHHH
Q 009206 152 DSKPWLIQVYSDGSYLCGQFSGAWKTI 178 (540)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~ 178 (540)
+.+..++.|.-|.|++|+++.+...+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~ 142 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPW 142 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHH
Confidence 456789999999999999998776543
No 354
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=83.53 E-value=1.6 Score=35.25 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=32.6
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchh--hhhHHHHhC-CCCccceeeeeeEEEE
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIR--LATHLAERK-PIGQIFFRRGLPSLVA 222 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~--~~~~l~~~~-~~~~~~~V~~~Ptl~~ 222 (540)
++.|--|+|++|++....+. ..+ .+..++.+.+. ......++. | .+.+|+|.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g------~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKG------QRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCC------CCCcCEEEE
Confidence 45667799999987664444 322 56666666444 332334443 5 789998755
No 355
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=82.54 E-value=1.7 Score=41.53 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=61.3
Q ss_pred CCcceeEEeCC-CCcccccc---CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCC
Q 009206 133 HSVHAFNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPI 208 (540)
Q Consensus 133 ~~~~~V~~lt~-~~F~~~v~---~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~ 208 (540)
|.+..|.+++. ..|-+.|+ +....+|..|-|....|-.+.....=+|.++ +.++|.++-.. ... ...+|.
T Consensus 135 p~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss---~~g-as~~F~- 208 (273)
T KOG3171|consen 135 PRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS---NTG-ASDRFS- 208 (273)
T ss_pred CccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec---ccc-chhhhc-
Confidence 33445777765 66888883 3456779999999999999988888888776 45577777765 211 234444
Q ss_pred CccceeeeeeEEEEeCCCC
Q 009206 209 GQIFFRRGLPSLVAFPPGC 227 (540)
Q Consensus 209 ~~~~~V~~~Ptl~~f~~g~ 227 (540)
.+++|||.+|++|.
T Consensus 209 -----~n~lP~LliYkgGe 222 (273)
T KOG3171|consen 209 -----LNVLPTLLIYKGGE 222 (273)
T ss_pred -----ccCCceEEEeeCCc
Confidence 89999999999985
No 356
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=82.41 E-value=5.8 Score=31.43 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=38.9
Q ss_pred CCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCC-ChhHHHHHH
Q 009206 290 ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVM 360 (540)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~-~~~~l~~fi 360 (540)
+...+.++.++.++...+.+..+. + ...+.++|+.+.|++++ + +. ..+.|.. +.+.|.+++
T Consensus 14 ~~~~~~~~~~~~e~~~~~~~~~v~--~---~~~a~~~~v~~vPti~i--~-G~--~~~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 14 QMTEKNVKKAVEELGIDAEFEKVT--D---MNEILEAGVTATPGVAV--D-GE--LVIMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeC--C---HHHHHHcCCCcCCEEEE--C-CE--EEEEeccCCHHHHHHHh
Confidence 334566777888775555554443 2 23477899999999999 3 32 2377753 446777665
No 357
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=82.16 E-value=5.5 Score=43.84 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=34.3
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHH
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME 361 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~ 361 (540)
..+++.|+|.+.|+++++...+.....+.|.++.++|.++|+
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 568899999999999887555554455789999999999987
No 358
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=82.00 E-value=2 Score=36.02 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=31.3
Q ss_pred cCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhh-HHHHhCCCCccceeeeeeEEEEeCCC
Q 009206 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 163 pwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~-~l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
|||++|++....+.+.. +.+-.+|..+++... .+.+..| ...+|++ |.+|
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg------~~tvP~v--fi~g 75 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSN------WPTIPQL--YVKG 75 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhC------CCCCCEE--EECC
Confidence 99999988776665431 256677876544333 3444445 6688987 4444
No 359
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=80.75 E-value=0.8 Score=39.08 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=54.9
Q ss_pred CCCcccccc--CCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhH-HHHhCCCCccceee-eee
Q 009206 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH-LAERKPIGQIFFRR-GLP 218 (540)
Q Consensus 143 ~~~F~~~v~--~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~-l~~~~~~~~~~~V~-~~P 218 (540)
.+++++++. .+++++|.=.+..|+-+......|++......+.+.++-++.-+++...+ +++++| |+ .=|
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~------V~HeSP 80 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFG------VKHESP 80 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----------SS
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhC------CCcCCC
Confidence 355777774 47888888889999999988888888888776657899999887755443 678888 64 789
Q ss_pred EEEEeCCCC
Q 009206 219 SLVAFPPGC 227 (540)
Q Consensus 219 tl~~f~~g~ 227 (540)
.++++++|.
T Consensus 81 Q~ili~~g~ 89 (105)
T PF11009_consen 81 QVILIKNGK 89 (105)
T ss_dssp EEEEEETTE
T ss_pred cEEEEECCE
Confidence 999999995
No 360
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=79.41 E-value=2.1 Score=37.85 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=54.0
Q ss_pred cccc--cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeE-EEEe
Q 009206 147 PSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS-LVAF 223 (540)
Q Consensus 147 ~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Pt-l~~f 223 (540)
+++| ..++.++|-|=.+|-+.|.++-....++|..++..+.|..||.++-+. +.+-|. +. -|. +++|
T Consensus 12 DqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd---fn~~ye------l~-dP~tvmFF 81 (133)
T PF02966_consen 12 DQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD---FNQMYE------LY-DPCTVMFF 81 (133)
T ss_dssp HHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC---CHHHTT------S--SSEEEEEE
T ss_pred HHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh---hhcccc------cC-CCeEEEEE
Confidence 3444 468899999999999999999999999999999999999999995554 556666 66 555 5666
Q ss_pred CCC
Q 009206 224 PPG 226 (540)
Q Consensus 224 ~~g 226 (540)
-++
T Consensus 82 ~rn 84 (133)
T PF02966_consen 82 FRN 84 (133)
T ss_dssp ETT
T ss_pred ecC
Confidence 344
No 361
>PTZ00062 glutaredoxin; Provisional
Probab=78.85 E-value=7.4 Score=37.46 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=48.8
Q ss_pred eEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 009206 280 VKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (540)
Q Consensus 280 ~~vv~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~ 355 (540)
..|++|.. .+....+.+..++..| ..+.|..|. .+ |+|...|++++|+++... -.+.|. +...
T Consensus 19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~---~d-------~~V~~vPtfv~~~~g~~i-~r~~G~-~~~~ 85 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVN---LA-------DANNEYGVFEFYQNSQLI-NSLEGC-NTST 85 (204)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEc---cc-------cCcccceEEEEEECCEEE-eeeeCC-CHHH
Confidence 55777732 2233456677788887 457777775 21 999999999999976532 234565 6778
Q ss_pred HHHHHHhhcc
Q 009206 356 LSEVMEQNKL 365 (540)
Q Consensus 356 l~~fi~~~~~ 365 (540)
|..++..+..
T Consensus 86 ~~~~~~~~~~ 95 (204)
T PTZ00062 86 LVSFIRGWAQ 95 (204)
T ss_pred HHHHHHHHcC
Confidence 8888877543
No 362
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=78.48 E-value=6.2 Score=34.48 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=18.9
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCC
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGV 342 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~ 342 (540)
..+++.|+|...|+++++...+.
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCCC
Confidence 46788999999999999975553
No 363
>PF13728 TraF: F plasmid transfer operon protein
Probab=78.12 E-value=12 Score=36.29 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=43.6
Q ss_pred CcHHHHHHHHhhccCceEEEEEeec---------cccHHHHHHcCCCCCCEEEEEeCCCCcee-eecCCCChhHHHH
Q 009206 292 ASPFVRQISRNYWAYASFAFVLWRE---------EESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSE 358 (540)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~---------~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~-~y~G~~~~~~l~~ 358 (540)
..|.++.++..| ...+..|+... .....++++|||+..|++++...++.... +-.|-++.++|.+
T Consensus 138 ~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 138 QAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELED 212 (215)
T ss_pred HHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHH
Confidence 467778888877 34444444321 02367999999999999999987663332 3368778777654
No 364
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=77.88 E-value=8 Score=33.06 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=43.0
Q ss_pred chhhhhhhhhcCCCceEEEEE-eCCCCCCcH--HHHH---HHHhhccCceEEEEEeecc--ccHHHHHHcCCCC-CCEEE
Q 009206 265 ESMGKNFLAKTGPHKVKVIFF-SKTGERASP--FVRQ---ISRNYWAYASFAFVLWREE--ESSIWWNTFEVES-APAIV 335 (540)
Q Consensus 265 ~~~~~~fl~~~~~~~~~vv~f-~~~~~~~~~--~~~~---~A~~~~~~~~f~~v~~~~~--~~~~l~~~f~V~~-~Ptlv 335 (540)
.+.+++++... .+++ +++| .++ .|+-. .++. ......+.+.++++.+.+. -+..++++|||.. -|-++
T Consensus 7 ~eql~~i~~~S-~~~~-~~iFKHSt-~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 7 EEQLEEILEES-KEKP-VLIFKHST-RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp HHHHHHHHHH----SE-EEEEEE-T-T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred HHHHHHHHHhc-ccCc-EEEEEeCC-CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 33367777653 2345 4455 322 23222 2222 2322222377888887654 2367999999997 79999
Q ss_pred EEeCCCCceeeecCCCChhHH
Q 009206 336 FLKDPGVKPVVYYGSFNNSRL 356 (540)
Q Consensus 336 ~fk~~~~~~~~y~G~~~~~~l 356 (540)
+++++...-..-++.++.+.|
T Consensus 84 li~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH
T ss_pred EEECCEEEEECccccCCHHhc
Confidence 999754321122455666554
No 365
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=77.04 E-value=14 Score=30.33 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=39.6
Q ss_pred eEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 009206 280 VKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (540)
Q Consensus 280 ~~vv~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~ 355 (540)
+.+.+|. +. |....+.+..++..+ +.+.+..+...+ ..+++++|||.+.|++++ + + ...+.|..+.++
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~--~~e~a~~~~V~~vPt~vi--d-G--~~~~~G~~~~~e 85 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGAL--FQDEVEERGIMSVPAIFL--N-G--ELFGFGRMTLEE 85 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHh--CHHHHHHcCCccCCEEEE--C-C--EEEEeCCCCHHH
Confidence 5555553 32 222234555566544 345666665332 367999999999999975 3 2 234567555444
No 366
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.92 E-value=5 Score=38.62 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=49.6
Q ss_pred hhhhhhcCCCceEEEEEe---CCCCCCcHHHHHHHHhhc-cCceEEEEEeeccccHHHHHHcCCCC------CCEEEEEe
Q 009206 269 KNFLAKTGPHKVKVIFFS---KTGERASPFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVES------APAIVFLK 338 (540)
Q Consensus 269 ~~fl~~~~~~~~~vv~f~---~~~~~~~~~~~~~A~~~~-~~~~f~~v~~~~~~~~~l~~~f~V~~------~Ptlv~fk 338 (540)
+.-+..+....|.+-||. ++|.+.+|.+-.++.+|. +.++||.|+...= ++.+++|+|.. .||+++|.
T Consensus 136 deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf--pd~a~kfris~s~~srQLPT~ilFq 213 (265)
T KOG0914|consen 136 DEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF--PDVAAKFRISLSPGSRQLPTYILFQ 213 (265)
T ss_pred HHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC--cChHHheeeccCcccccCCeEEEEc
Confidence 333333333457777773 456667888888777774 5678999986542 46889999972 79999998
Q ss_pred CCCC
Q 009206 339 DPGV 342 (540)
Q Consensus 339 ~~~~ 342 (540)
++.+
T Consensus 214 ~gkE 217 (265)
T KOG0914|consen 214 KGKE 217 (265)
T ss_pred cchh
Confidence 7643
No 367
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=75.51 E-value=7.7 Score=29.43 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=27.2
Q ss_pred cHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEE
Q 009206 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (540)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~ 336 (540)
.+.+..++..+ ..+.+..++..+ .+++++++|+.+.|++++
T Consensus 18 ~~~l~~l~~~~-~~i~~~~id~~~--~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 18 VQAANRIAALN-PNISAEMIDAAE--FPDLADEYGVMSVPAIVI 58 (67)
T ss_pred HHHHHHHHHhC-CceEEEEEEccc--CHhHHHHcCCcccCEEEE
Confidence 45555555433 346666665432 367999999999999876
No 368
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=71.77 E-value=7.9 Score=33.06 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=58.4
Q ss_pred CCccccccCC-CcEEEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEE
Q 009206 144 EDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (540)
Q Consensus 144 ~~F~~~v~~~-~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~ 222 (540)
++.+.++... .+.+|=|+..--+ .....|.++|..+.....++...-. . +.++++ +. .|++++
T Consensus 9 ~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~---~---~~~~~~------~~-~~~vvl 72 (107)
T cd03068 9 KQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS---E---IFKSLK------VS-PGQLVV 72 (107)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH---H---HHHhcC------CC-CCceEE
Confidence 4455666554 6777766665333 4567899999999777778665543 2 556665 54 577888
Q ss_pred eCCCCCC---CCCcccccCC-CCHHH-HHHHHHH
Q 009206 223 FPPGCKS---SDCMTRFEGE-LSVDA-VTDWFAT 251 (540)
Q Consensus 223 f~~g~~~---~~~~~~y~G~-~~~~~-i~~fi~~ 251 (540)
|++..-+ ......|.|. .+.++ |..|+..
T Consensus 73 ~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 73 FQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred ECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 8654211 1123467777 56655 9999864
No 369
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=71.61 E-value=4.3 Score=35.21 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=36.0
Q ss_pred CCceEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCC--CCEEEEEeCCCC
Q 009206 277 PHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGV 342 (540)
Q Consensus 277 ~~~~~vv~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~--~Ptlv~fk~~~~ 342 (540)
.+++++|.|. +- |....+.+...+..+.....|..+.+... .......|++.+ .||+++|...+.
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~-~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD-EEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC-CCchhhhcccCCCccceEEEECCCCC
Confidence 3566677663 22 23334444443332222345666655432 234567899976 899999975443
No 370
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=71.40 E-value=18 Score=29.59 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=18.2
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCC
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGV 342 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~ 342 (540)
..+...|++.+.|+++++.+.+.
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred chHHHhcCcCccceEEEECCCCc
Confidence 46888999999999998865543
No 371
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=71.27 E-value=3.9 Score=43.79 Aligned_cols=60 Identities=8% Similarity=-0.002 Sum_probs=34.0
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCC---CCccceeeeeeEEEE
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP---IGQIFFRRGLPSLVA 222 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~---~~~~~~V~~~Ptl~~ 222 (540)
++.|..|||++|++....+.+. | +.+-.+|+++++....+-++.+ .-+....+++|+|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g-i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D-IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 5678899999998766444432 2 3666788875553222222210 000011679999855
No 372
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.14 E-value=9.1 Score=34.98 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=29.8
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHH
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEV 359 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~f 359 (540)
++|+++|+|++.|++++|...++.--...|-+..+.+...
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~v 144 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAV 144 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHH
Confidence 5899999999999999998766543334777776654433
No 373
>PRK10824 glutaredoxin-4; Provisional
Probab=70.29 E-value=4.1 Score=35.44 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=28.5
Q ss_pred cCCCCccCChHHHHHHHHHHhcccceeeeeccchhhhhH-HHHhCCCCccceeeeeeEEEEeCCC
Q 009206 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH-LAERKPIGQIFFRRGLPSLVAFPPG 226 (540)
Q Consensus 163 pwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~-l~~~~~~~~~~~V~~~Ptl~~f~~g 226 (540)
|||++|++....+.+.. +.+..+|..++..... |-+.-| ...+|.| |.+|
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg------~~TVPQI--FI~G 78 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYAN------WPTFPQL--WVDG 78 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 79999988776665542 2455566665433222 333333 5577765 4454
No 374
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=69.79 E-value=28 Score=31.86 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=44.5
Q ss_pred CCCCcHHHHHHHHhhccCceEEEEEeeccc----------cHHH-HHHc---CCCCCCEEEEEeCCCCcee-eecCCCCh
Q 009206 289 GERASPFVRQISRNYWAYASFAFVLWREEE----------SSIW-WNTF---EVESAPAIVFLKDPGVKPV-VYYGSFNN 353 (540)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~----------~~~l-~~~f---~V~~~Ptlv~fk~~~~~~~-~y~G~~~~ 353 (540)
|....|.+..++.+|. ..+..|+..+.. .... ...| ++...|+.+++...+.... .+.|.++.
T Consensus 65 Cr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~ 142 (153)
T TIGR02738 65 CHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDE 142 (153)
T ss_pred HHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCH
Confidence 3345677777777662 445555443211 1223 3455 7888999999976544322 46898888
Q ss_pred hHHHHHHHh
Q 009206 354 SRLSEVMEQ 362 (540)
Q Consensus 354 ~~l~~fi~~ 362 (540)
+.|.+.|..
T Consensus 143 ~~l~~~I~~ 151 (153)
T TIGR02738 143 AELANRMDE 151 (153)
T ss_pred HHHHHHHHH
Confidence 888877654
No 375
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=68.70 E-value=56 Score=28.28 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=32.5
Q ss_pred cccHHHHHHcCCCCCCEEEEEeCCCCce---eeecCCCChhHHHHHHHh
Q 009206 317 EESSIWWNTFEVESAPAIVFLKDPGVKP---VVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 317 ~~~~~l~~~f~V~~~Ptlv~fk~~~~~~---~~y~G~~~~~~l~~fi~~ 362 (540)
.+...++..+++.++|+++++...+..- ....|..+.++|...+..
T Consensus 63 ~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~ 111 (116)
T cd02991 63 PEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTF 111 (116)
T ss_pred hHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHH
Confidence 3336799999999999999985322222 125899988887776654
No 376
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=68.17 E-value=14 Score=32.42 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=17.9
Q ss_pred HHHHHHcCCCCCCEEEEEeCCC
Q 009206 320 SIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
..+.+.|+|.+.|+++++...+
T Consensus 89 ~~~~~~~~v~~iPt~~lid~~G 110 (132)
T cd02964 89 ELLEKQFKVEGIPTLVVLKPDG 110 (132)
T ss_pred HHHHHHcCCCCCCEEEEECCCC
Confidence 4577889999999999996544
No 377
>PF13446 RPT: A repeated domain in UCH-protein
Probab=67.78 E-value=8.4 Score=29.31 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=32.5
Q ss_pred cccccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcC
Q 009206 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (540)
Q Consensus 37 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~ 88 (540)
.+-|+.|||+++.+.+.|-.+|+.... .+ ......+.+|..++.
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-----~~---P~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-----DD---PSQKDTLREALRVIA 48 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-----cC---hHhHHHHHHHHHHHH
Confidence 357999999999999999999999887 12 234444556666554
No 378
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=67.54 E-value=16 Score=31.53 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=25.6
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHH
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l 356 (540)
..++..|++...|+.+++...+.....+.|.++.+.|
T Consensus 90 ~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 90 GRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred chHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 4688889999999777775455444456787766543
No 379
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=64.22 E-value=12 Score=35.77 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=33.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcC
Q 009206 46 KPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (540)
Q Consensus 46 ~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~ 88 (540)
+++||.|||.+|+.++..+| .++.+.-.+|-.||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y-----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY-----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHH
Confidence 47899999999999999998 356778889999999765
No 380
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=63.06 E-value=33 Score=34.27 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHhhccCceEEEEEeecc---------ccHHHHHHcCCCCCCEEEEEeCCCCceee-ecCCCChhHHHHH
Q 009206 290 ERASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVKPVV-YYGSFNNSRLSEV 359 (540)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~~f~~v~~~~~---------~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~-y~G~~~~~~l~~f 359 (540)
....|.++..+..| ...+..|+.... ....+++++||+..|++++...+...... -.|-++.++|.+=
T Consensus 166 ~~~apil~~fa~~y--gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~R 243 (256)
T TIGR02739 166 QKMAPVIQAFAKEY--GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKER 243 (256)
T ss_pred HHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHH
Confidence 33567777778776 344444443222 11458999999999999999876543322 3677888877554
Q ss_pred H
Q 009206 360 M 360 (540)
Q Consensus 360 i 360 (540)
|
T Consensus 244 i 244 (256)
T TIGR02739 244 I 244 (256)
T ss_pred H
Confidence 4
No 381
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=59.51 E-value=8.7 Score=39.80 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCC-------CcHHHHHHHHHHHHHcCChhhhhhhhhcc
Q 009206 48 YSSVEQVKEAYEKFSSKWNSGEEI-------PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (540)
Q Consensus 48 ~a~~~~Ik~ayr~l~~~~HPD~~~-------~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g 100 (540)
.++..+|+.+|+..+...||++-. ...+.+..|.+||.+|++...|...|.+-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 356788999999999999999653 34566999999999999876666776654
No 382
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=56.89 E-value=55 Score=26.39 Aligned_cols=60 Identities=15% Similarity=0.302 Sum_probs=36.3
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC
Q 009206 278 HKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 278 ~~~~vv~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
..+.+|+++-. .....++.....+ ...+..+...+.....+.+.|+|...|+++++...+
T Consensus 34 ~~v~~v~Vs~d--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 34 DDVEFVFVSLD--EDEEEWKKFLKKN--NFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDG 93 (95)
T ss_dssp TTEEEEEEE-S--SSHHHHHHHHHTC--TTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTS
T ss_pred CCEEEEEEEeC--CCHHHHHHHHHhc--CCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCC
Confidence 34667766543 2234555444433 234555554444457899999999999999997654
No 383
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=56.06 E-value=48 Score=40.07 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=55.6
Q ss_pred CceEEEEE-e---CCCCCCcHHHHHHHHhhccCceEEEEEee----cc-----------------------ccHHHHHHc
Q 009206 278 HKVKVIFF-S---KTGERASPFVRQISRNYWAYASFAFVLWR----EE-----------------------ESSIWWNTF 326 (540)
Q Consensus 278 ~~~~vv~f-~---~~~~~~~~~~~~~A~~~~~~~~f~~v~~~----~~-----------------------~~~~l~~~f 326 (540)
.++.+|-| . ..|....|.+..+..+|.+. .|..+.+. +. ....+.++|
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 35666655 2 33444578888888888643 23333321 11 123577899
Q ss_pred CCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhh
Q 009206 327 EVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 327 ~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
+|.+.|+++++...+.....+.|+...+.|.+++...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 9999999999965565544578888888888888764
No 384
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=55.65 E-value=95 Score=24.30 Aligned_cols=36 Identities=33% Similarity=0.536 Sum_probs=25.2
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecC-CCChhHHHHHHH
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYG-SFNNSRLSEVME 361 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G-~~~~~~l~~fi~ 361 (540)
+++ .+|||.+.|++++ ++ ...+.| ..+.++|.+||+
T Consensus 40 ~~~-~~ygv~~vPalvI---ng--~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 40 EEI-EKYGVMSVPALVI---NG--KVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHH-HHTT-SSSSEEEE---TT--EEEEESS--HHHHHHHHHH
T ss_pred HHH-HHcCCCCCCEEEE---CC--EEEEEecCCCHHHHHHHhC
Confidence 556 9999999999976 23 356888 556778888874
No 385
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=54.91 E-value=26 Score=31.46 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=45.0
Q ss_pred cEEEEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCc
Q 009206 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM 233 (540)
Q Consensus 155 ~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~ 233 (540)
.-++.+|+|.||-|.. |-+. |+..+ .|..+..++-. .+-+++++. +.-.+-=|.++ +|
T Consensus 26 ~~~~vyksPnCGCC~~----w~~~---mk~~Gf~Vk~~~~~d~~---alK~~~gIp--~e~~SCHT~VI--~G------- 84 (149)
T COG3019 26 TEMVVYKSPNCGCCDE----WAQH---MKANGFEVKVVETDDFL---ALKRRLGIP--YEMQSCHTAVI--NG------- 84 (149)
T ss_pred eeEEEEeCCCCccHHH----HHHH---HHhCCcEEEEeecCcHH---HHHHhcCCC--hhhccccEEEE--cC-------
Confidence 4567899999999965 4433 33333 56666655332 356677632 22233333332 22
Q ss_pred ccccCCCCHHHHHHHHHHh
Q 009206 234 TRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 234 ~~y~G~~~~~~i~~fi~~~ 252 (540)
.-.+|-.-+++|..++...
T Consensus 85 y~vEGHVPa~aI~~ll~~~ 103 (149)
T COG3019 85 YYVEGHVPAEAIARLLAEK 103 (149)
T ss_pred EEEeccCCHHHHHHHHhCC
Confidence 1236888889999888765
No 386
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=54.32 E-value=18 Score=30.90 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=32.1
Q ss_pred EEEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchh-h-hhHHHHhCCCCccceeeeeeEEEE
Q 009206 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-L-ATHLAERKPIGQIFFRRGLPSLVA 222 (540)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~-~-~~~l~~~~~~~~~~~V~~~Ptl~~ 222 (540)
+|.|-.+||+.|+++...|.+ +.....+..+|-.++. . ...|.+--+ .+.+|.+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg------~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTG------QRTVPNVFI 73 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcC------CCCCCEEEE
Confidence 466888999999997777766 3222355555544332 1 112232223 458887643
No 387
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=54.01 E-value=1.2e+02 Score=26.68 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=14.8
Q ss_pred HcCCCCCCEEEEEeCCCC
Q 009206 325 TFEVESAPAIVFLKDPGV 342 (540)
Q Consensus 325 ~f~V~~~Ptlv~fk~~~~ 342 (540)
.||+.+.|+++++...+.
T Consensus 75 ~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred hcCCCCCCEEEEECCCCC
Confidence 468999999999987654
No 388
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=53.55 E-value=31 Score=31.72 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCCcEEEEEE-ecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchhhhhHHHHhCC
Q 009206 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKP 207 (540)
Q Consensus 152 ~~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~~~~~l~~~~~ 207 (540)
.++.+++.|| ..+++-|..=+-.|++.-.+++... .|--|..+........+++++
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~ 86 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG 86 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 4568888888 5688889888888888888887764 677777776666677899987
No 389
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=53.52 E-value=39 Score=33.21 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=42.3
Q ss_pred cceeEEeCCCCccccc---cCCCcEEEEEEecCCCCccCChHHHHHHHHHHhccccee
Q 009206 135 VHAFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG 189 (540)
Q Consensus 135 ~~~V~~lt~~~F~~~v---~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~ 189 (540)
++.|..++.++..++. +.+.|.+++|=|-.|+.-..-.+.++++++++...+.+.
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl 138 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFL 138 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhhee
Confidence 4567888877744443 689999999999889888777888999988887755433
No 390
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=52.60 E-value=39 Score=28.32 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=27.9
Q ss_pred ceEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEeeccc-cHHHHHHcCCCCCCEE
Q 009206 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAI 334 (540)
Q Consensus 279 ~~~vv~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~-~~~l~~~f~V~~~Ptl 334 (540)
++.+|.| .+. |....|.+..++..+.+...+..+...+.+ ...+++++++..+|++
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 4555544 322 223345666666555444444433211111 2457777787667754
No 391
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=50.51 E-value=97 Score=25.74 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCC-CCceeeecCCCC
Q 009206 280 VKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFN 352 (540)
Q Consensus 280 ~~vv~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~-~~~~~~y~G~~~ 352 (540)
.++.+|.++.....-.++.+|..+++++.|-... .+. .....-. .+.+++|++. ......|.|.++
T Consensus 19 ~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~-G~~-----~~~~~~~-~~~~i~frp~~~~~~~~y~G~~t 85 (91)
T cd03070 19 NIIGYFESKDSDEYDNFRKVANILRDDCSFLVGF-GDV-----TKPERPP-GDNIIYFPPGHNAPDMVYLGSLT 85 (91)
T ss_pred eEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEe-ccc-----cccccCC-CCCeEEECCCCCCCceEEccCCC
Confidence 4344665544334456788999999988874432 221 1111122 3445666654 444477999874
No 392
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=48.96 E-value=25 Score=38.90 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=44.8
Q ss_pred CceEEEEEeecc--ccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhh
Q 009206 306 YASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 306 ~~~f~~v~~~~~--~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
.+..-.++++.. +..++.++||+-+.|++++|..++..+....|.++.+.+.++++..
T Consensus 508 ~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 508 DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 344555555543 3477899999999999999997777776688999999999888753
No 393
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=47.69 E-value=51 Score=31.80 Aligned_cols=81 Identities=11% Similarity=0.150 Sum_probs=49.3
Q ss_pred eEEEEEeCC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCCceee------ecCC
Q 009206 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV------YYGS 350 (540)
Q Consensus 280 ~~vv~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~~~~~------y~G~ 350 (540)
++|.++.+- ++.....+.-+|..| ..++|..+..+.. ..-.+|.....|+|++|+.+...... +...
T Consensus 162 i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~---gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlged 237 (273)
T KOG3171|consen 162 IVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNT---GASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGED 237 (273)
T ss_pred EEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeeccc---cchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence 344455432 233344555588877 4677877775544 35678888889999999976542211 1223
Q ss_pred CChhHHHHHHHhhc
Q 009206 351 FNNSRLSEVMEQNK 364 (540)
Q Consensus 351 ~~~~~l~~fi~~~~ 364 (540)
+...++..|++.+.
T Consensus 238 ffa~dle~FL~e~g 251 (273)
T KOG3171|consen 238 FFAGDLESFLNEYG 251 (273)
T ss_pred hhhhhHHHHHHHcC
Confidence 45556788887643
No 394
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=46.23 E-value=77 Score=31.47 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=43.0
Q ss_pred CCCcHHHHHHHHhhccCceEEEEEeecc---------ccHHHHHHcCCCCCCEEEEEeCCCCcee-eecCCCChhHHHHH
Q 009206 290 ERASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSEV 359 (540)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~~f~~v~~~~~---------~~~~l~~~f~V~~~Ptlv~fk~~~~~~~-~y~G~~~~~~l~~f 359 (540)
....|.++..+..| ...+.-|+.... .....++++||+..|++++...+..... +-.|-++.++|.+=
T Consensus 159 ~~~aPil~~fa~~y--g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~R 236 (248)
T PRK13703 159 GQLAQVINDFRDTY--GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKR 236 (248)
T ss_pred HHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHH
Confidence 33567778888776 333333433211 1134678999999999999987654432 23677888777554
Q ss_pred H
Q 009206 360 M 360 (540)
Q Consensus 360 i 360 (540)
|
T Consensus 237 i 237 (248)
T PRK13703 237 F 237 (248)
T ss_pred H
Confidence 4
No 395
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.14 E-value=1.6e+02 Score=30.28 Aligned_cols=94 Identities=11% Similarity=0.201 Sum_probs=55.8
Q ss_pred hhhhhhhcCCCceEEEEEeCC---CCC-----CcHHHHHHHHhhcc--------CceEEEEEeeccccHHHHHHcCCCCC
Q 009206 268 GKNFLAKTGPHKVKVIFFSKT---GER-----ASPFVRQISRNYWA--------YASFAFVLWREEESSIWWNTFEVESA 331 (540)
Q Consensus 268 ~~~fl~~~~~~~~~vv~f~~~---~~~-----~~~~~~~~A~~~~~--------~~~f~~v~~~~~~~~~l~~~f~V~~~ 331 (540)
...|+...+.|...+++|+.. ..+ ...++..+|..++. ++-|..|+.. +.+++.+.+++++.
T Consensus 50 ~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~--e~p~~Fq~l~ln~~ 127 (331)
T KOG2603|consen 50 FSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD--ESPQVFQQLNLNNV 127 (331)
T ss_pred hhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc--ccHHHHHHhcccCC
Confidence 678887555555666677421 111 12233335555443 2345555543 35789999999999
Q ss_pred CEEEEEeCCCCce---eeecC---CCChhHHHHHHHhh
Q 009206 332 PAIVFLKDPGVKP---VVYYG---SFNNSRLSEVMEQN 363 (540)
Q Consensus 332 Ptlv~fk~~~~~~---~~y~G---~~~~~~l~~fi~~~ 363 (540)
|.+++|++....+ ..+++ ....+.+.+|++..
T Consensus 128 P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 128 PHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred CeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 9999997643322 22221 12478899998764
No 396
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=44.79 E-value=31 Score=32.79 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=43.7
Q ss_pred CceEEEEEeCC---CCCCcHHHHHHHHhhccCceEEEEEeeccccHHHHHHcCCCCCCEEEEEeCCC
Q 009206 278 HKVKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 278 ~~~~vv~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
.++++-|+-+. |+....-+..+|..+. ...|..|+...| +-++.+++|+-.|+|++|+++.
T Consensus 85 ~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~--PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 85 EKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKA--PFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred ceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccC--ceeeeeeeeeEeeeEEEEEcCE
Confidence 34655566442 4445566777888765 457777776554 6799999999999999999754
No 397
>PHA02125 thioredoxin-like protein
Probab=44.52 E-value=66 Score=25.10 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=15.4
Q ss_pred cHHHHHHcCCCCCCEEE
Q 009206 319 SSIWWNTFEVESAPAIV 335 (540)
Q Consensus 319 ~~~l~~~f~V~~~Ptlv 335 (540)
..+++++|+|.+.||++
T Consensus 35 ~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 35 GVELTAKHHIRSLPTLV 51 (75)
T ss_pred CHHHHHHcCCceeCeEE
Confidence 47899999999999987
No 398
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=42.61 E-value=12 Score=35.12 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=23.0
Q ss_pred EEEecCCCCccCChHHHHHHHHHHhccc
Q 009206 159 QVYSDGSYLCGQFSGAWKTIAALLEGIA 186 (540)
Q Consensus 159 ~FYapwC~~C~~l~p~~~~~A~~l~~~~ 186 (540)
.|..|.|+.|-.+.|.|.++...+.+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i 29 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKI 29 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcE
Confidence 5889999999999999999999998765
No 399
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=41.97 E-value=1.6e+02 Score=27.83 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=48.7
Q ss_pred EEEEeCCC---CCCcHHHHHHHHhhccCceEEEEEeecc-----------ccHHHHHHcCC--CCCCEEEEEeCCCCce-
Q 009206 282 VIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREE-----------ESSIWWNTFEV--ESAPAIVFLKDPGVKP- 344 (540)
Q Consensus 282 vv~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~-----------~~~~l~~~f~V--~~~Ptlv~fk~~~~~~- 344 (540)
|+|+.+.| ....|.++.++.+|. +.+.-|...+. ....+.+.|++ ...|+.+++...+...
T Consensus 74 V~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 74 VLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 44554432 334566666777662 33333433211 11347778995 5899999997766653
Q ss_pred eeecCCCChhHHHHHHHh
Q 009206 345 VVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 345 ~~y~G~~~~~~l~~fi~~ 362 (540)
..+-|.++.++|.+.|..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 152 PLLQGATDAAGFMARMDT 169 (181)
T ss_pred EEEECCCCHHHHHHHHHH
Confidence 357899898888777765
No 400
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=41.63 E-value=28 Score=31.18 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=26.9
Q ss_pred HHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 009206 202 LAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (540)
Q Consensus 202 l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi~~ 251 (540)
.+++.+ |.+.||+++ +|. .+.|..+.++|.+.|.+
T Consensus 128 ~~~~~~------i~~tPt~~i--nG~-------~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 128 LARQLG------ITGTPTFFI--NGK-------YVVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHT-------SSSSEEEE--TTC-------EEETTTSHHHHHHHHHH
T ss_pred HHHHcC------CccccEEEE--CCE-------EeCCCCCHHHHHHHHcC
Confidence 567777 999999988 663 35889999999988764
No 401
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=41.24 E-value=45 Score=28.87 Aligned_cols=44 Identities=9% Similarity=-0.024 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCC-------cHHHHHHHHHHHHHcCCh
Q 009206 47 PYSSVEQVKEAYEKFSSKWNSGEEIP-------STADFLKIQYAYELLTDP 90 (540)
Q Consensus 47 ~~a~~~~Ik~ayr~l~~~~HPD~~~~-------~~~~f~~i~~Ay~~L~d~ 90 (540)
+..+..+++.|.|.+-++.|||.... +++-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45677889999999999999995432 233477777666666544
No 402
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=40.34 E-value=45 Score=30.75 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=33.4
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhh
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
..+.+.|++.+.|+.+++...+.....+.|.++.+++.+++.+.
T Consensus 127 ~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 127 GKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 45888999999997777755555444567888989988888764
No 403
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=35.68 E-value=77 Score=26.88 Aligned_cols=53 Identities=19% Similarity=0.428 Sum_probs=36.7
Q ss_pred CccCCCCH-HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChhhhhhhh-hccch
Q 009206 44 GIKPYSSV-EQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYD-VYGID 102 (540)
Q Consensus 44 gv~~~a~~-~~Ik~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd-~~g~~ 102 (540)
|++|++.. .++-+.++.+...+++ ++.+.+..|.+.| +.||.-+..|| .++..
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~----~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~~ 105 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG----GDPELLRGLAQMY--VEDPRFAAMYDKKFGPG 105 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-------HHHHHHHHHHT--TSTHHHHHHHG-GGSTT
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHH--HcCHHHHhhccccCCHH
Confidence 55555443 4477888888888876 4577899999998 78999999999 67653
No 404
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=35.31 E-value=1.4e+02 Score=25.77 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHhcccceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCC
Q 009206 170 QFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (540)
Q Consensus 170 ~l~p~~~~~A~~l~~~~~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~ 225 (540)
.+.+.+..+.+.+......+.|..+ +. +-++|+ |+.+||+++-.+
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~Id--P~---~F~~y~------I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQID--PR---LFRQYN------ITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcceeEC--hh---HHhhCC------ceEcCEEEEEcC
Confidence 6677777777666554433333333 44 778888 999999999887
No 405
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=35.14 E-value=1.9e+02 Score=24.84 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=39.8
Q ss_pred EEEEEecCCCh--hhHHHHHHHHHHHHhhccccccccccccCCchHHHHhccCCceEEEE-EechhhHHHHHhhccCCcc
Q 009206 397 YCVILAGRLSP--ELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAW-LDGEAQDRYCSFYLFSETS 473 (540)
Q Consensus 397 lcvi~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~f~w-vd~~~q~~f~~~~~~~~~~ 473 (540)
-|+|+|.++.+ +.+..++.+..+|++.-++ ++.+..+-++.|.. .+.+. .++++-|..
T Consensus 16 p~lvlf~D~Edeg~l~~A~~llQpiAd~~~ak--------------a~~k~~dap~~f~~a~ede~-tdsLRDf~n---- 76 (116)
T cd03071 16 PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAK--------------YKAKEEEAPLLFFVAGEDDM-TDSLRDYTN---- 76 (116)
T ss_pred ceEEEEecccchhhHHHHHHHHHHHHHHHHHH--------------hhccCCCcceeeeeeccchH-HHHHHHhcC----
Confidence 58888887543 3677788888888843321 11223233333332 34444 778877741
Q ss_pred ccccCCccCCCCCCeEEEEE
Q 009206 474 FETCGARRDMSDVPRLFIVR 493 (540)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~v~ 493 (540)
-++..|-++++-
T Consensus 77 --------L~d~~P~LviLD 88 (116)
T cd03071 77 --------LPEAAPLLTILD 88 (116)
T ss_pred --------CCccCceEEEEe
Confidence 344557777774
No 406
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=34.71 E-value=2.6e+02 Score=26.92 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=57.3
Q ss_pred hHHHHHHHhhccCCCccccccchhhhccCCCCCCCCCCCCceeEEEEEecCCChhhHHHHHHHHHHHHhhcccccccccc
Q 009206 354 SRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAAD 433 (540)
Q Consensus 354 ~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (540)
+++++-.+.+++..+-+++...+..+.-..+ ...|+.|-+..++-+...-+...|..++.
T Consensus 79 ~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As--------~gvwVvvhLy~~gvp~c~Ll~~~l~~la~------------ 138 (240)
T KOG3170|consen 79 AEWRATAEKAKFGEVFPISGPDYVKEVTKAS--------EGVWVVVHLYKQGVPLCALLSHHLQSLAC------------ 138 (240)
T ss_pred HHHHHHHHHhcccceeeccchHHHHHHHhcc--------CccEEEEEeeccccHHHHHHHHHHHHHhh------------
Confidence 3455556778888888899888877665331 12365554555555555445555555555
Q ss_pred ccCCchHHHHhccCCceEEEEEechhhHHHHHhhccCCccccccCCccCCCCCCeEEEEE
Q 009206 434 TDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVR 493 (540)
Q Consensus 434 ~~~~~~~~A~~~~~~~~~f~wvd~~~q~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 493 (540)
.|.. ++|+=+-+ .+|-|-|-..+.|.|++.+
T Consensus 139 ----------kfp~--iKFVki~a-----------------t~cIpNYPe~nlPTl~VY~ 169 (240)
T KOG3170|consen 139 ----------KFPQ--IKFVKIPA-----------------TTCIPNYPESNLPTLLVYH 169 (240)
T ss_pred ----------cCCc--ceEEeccc-----------------ccccCCCcccCCCeEEEee
Confidence 4432 55655444 3488888888899998874
No 407
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=33.73 E-value=1.3e+02 Score=31.00 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=46.3
Q ss_pred HHHHHHhcCCCCccccccccCccC-CCCHHHHHHHHHHHHHhc-------CCCCCC------CcHHHHHHHHHHHHHcCC
Q 009206 24 LFYQLVVLPRSFPPSHYDALGIKP-YSSVEQVKEAYEKFSSKW-------NSGEEI------PSTADFLKIQYAYELLTD 89 (540)
Q Consensus 24 ~~~~~~~~~~~~~~~~y~iLgv~~-~a~~~~Ik~ayr~l~~~~-------HPD~~~------~~~~~f~~i~~Ay~~L~d 89 (540)
++|.+..-..-...+.++-||++. ..+.+|+.+-.++++.+. ++|.+. ...+-++++.+||+.|.+
T Consensus 69 ~~F~~~WGlNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 69 FLFYLLWGLNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred HHHHHHhhhhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 345555555555678889999997 889999887777666553 344321 235668999999998875
Q ss_pred h
Q 009206 90 P 90 (540)
Q Consensus 90 ~ 90 (540)
.
T Consensus 149 ~ 149 (318)
T PF12725_consen 149 R 149 (318)
T ss_pred h
Confidence 4
No 408
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=33.65 E-value=77 Score=29.61 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=33.0
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~ 362 (540)
..+...|++.+.|+.+++...+.....+.|.++.+.+.++|..
T Consensus 132 ~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 132 GMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred ccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 3477889999999877776556555557898888888888765
No 409
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=32.97 E-value=52 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=25.3
Q ss_pred HHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 009206 202 LAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (540)
Q Consensus 202 l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G~~~~~~i~~fi 249 (540)
++++++ |.|+||+++ +| ..+.|..+.+.|.+.+
T Consensus 121 ~~~~~g------i~gtPt~~v--~g-------~~~~G~~~~~~l~~~i 153 (154)
T cd03023 121 LARALG------ITGTPAFII--GD-------TVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHcC------CCcCCeEEE--CC-------EEecCCCCHHHHHHHh
Confidence 677778 999999876 34 3568888888887764
No 410
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=31.93 E-value=29 Score=32.40 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=14.6
Q ss_pred HHHHhCCCCccceeeeeeEEEEeCC
Q 009206 201 HLAERKPIGQIFFRRGLPSLVAFPP 225 (540)
Q Consensus 201 ~l~~~~~~~~~~~V~~~Ptl~~f~~ 225 (540)
.++++++ |+++||+++|..
T Consensus 138 ~la~~m~------I~~~Ptlvi~~~ 156 (176)
T PF13743_consen 138 QLAREMG------ITGFPTLVIFNE 156 (176)
T ss_dssp HHHHHTT-------SSSSEEEEE--
T ss_pred HHHHHcC------CCCCCEEEEEec
Confidence 3889999 999999999983
No 411
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=29.63 E-value=4e+02 Score=23.66 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=38.2
Q ss_pred CCceEEEEEeCCCCCC----cHHHHHHHHhhccCceEEEEEeecccc-HHHHHHcCCCCCCEEEEEeCCC
Q 009206 277 PHKVKVIFFSKTGERA----SPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 277 ~~~~~vv~f~~~~~~~----~~~~~~~A~~~~~~~~f~~v~~~~~~~-~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
..+++|+=|+...+.. ...+...|...+ +|+.+...+.++ ++..+-|++...|++++|-.+.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs---nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVS---NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHh---hceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 4578888887654311 122333454443 345555444433 7899999999999998886543
No 412
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=29.52 E-value=3.4e+02 Score=23.08 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=21.6
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecC
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYG 349 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G 349 (540)
..+.+.|++...|+.+++...+.....+.|
T Consensus 95 ~~~~~~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 95 YATWRAYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hHHHHHhCCCcCCeEEEECCCCcEEEEEec
Confidence 568899999999999999655543333344
No 413
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=29.31 E-value=1.7e+02 Score=25.20 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=30.2
Q ss_pred EEEEEecC-CChhhHHHHHHHHHHHHhhccccccccccccCCchHHHHhccCCceEEEEEechhhHHHHH
Q 009206 397 YCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCS 465 (540)
Q Consensus 397 lcvi~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~f~wvd~~~q~~f~~ 465 (540)
+.+++|.. .+++--++.+.++++|+..+ ....++|+|||-+.-+-++.
T Consensus 22 ~~IvAFaee~dpdG~eFl~ilk~vA~~nt---------------------~np~LsiIWIDPD~FPllv~ 70 (120)
T cd03074 22 IHIVAFAEEEDPDGYEFLEILKEVARDNT---------------------DNPDLSIIWIDPDDFPLLVP 70 (120)
T ss_pred ceEEEEeccCCccHHHHHHHHHHHHHhcC---------------------cCCCceEEEECCccCchhhH
Confidence 44555654 34555567777888887322 13669999999875444444
No 414
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=28.21 E-value=1.1e+02 Score=27.21 Aligned_cols=42 Identities=29% Similarity=0.479 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCCCEEEEEeCCC----------CceeeecCCCChhHHHHHHH
Q 009206 320 SIWWNTFEVESAPAIVFLKDPG----------VKPVVYYGSFNNSRLSEVME 361 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~----------~~~~~y~G~~~~~~l~~fi~ 361 (540)
+.+.++|+|+..|++|+.+++. .......|..+...-.+.|.
T Consensus 61 P~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 61 PQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred hHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 5799999999999999998753 01122367766555444444
No 415
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=28.20 E-value=84 Score=23.96 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=28.2
Q ss_pred EEEEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchhhhhHHHHhCCCCccceeeeeeEEE
Q 009206 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (540)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~ 221 (540)
+.|+.+||+.|.+..-.. ..+|.. .+..|+..... ..+.+..+ ...+|+|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L-----~~~gl~~e~~~v~~~~~~--~~~~~~np------~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMAL-----LLAGITVELREVELKNKP--AEMLAASP------KGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHH-----HHcCCCcEEEEeCCCCCC--HHHHHHCC------CCCCCEEE
Confidence 456789999997754222 223432 44455543211 22444455 55899985
No 416
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=27.81 E-value=96 Score=23.99 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=42.5
Q ss_pred EEecCCCCccCChHHHHHHHHHHhccc-ceeeeeccchhhhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccccC
Q 009206 160 VYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEG 238 (540)
Q Consensus 160 FYapwC~~C~~l~p~~~~~A~~l~~~~-~v~~Vdc~~~~~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G 238 (540)
++.++|+.|++.. ++-.++|.. .+-.|+..+. ...+.+..+ -..+|+|. .+|..
T Consensus 2 y~~~~Sp~~~kv~-----~~l~~~~i~~~~~~v~~~~~--~~~~~~~~p------~~~vPvL~--~~g~~---------- 56 (75)
T PF13417_consen 2 YGFPGSPYSQKVR-----LALEEKGIPYELVPVDPEEK--RPEFLKLNP------KGKVPVLV--DDGEV---------- 56 (75)
T ss_dssp EEETTSHHHHHHH-----HHHHHHTEEEEEEEEBTTST--SHHHHHHST------TSBSSEEE--ETTEE----------
T ss_pred CCcCCChHHHHHH-----HHHHHcCCeEEEeccCcccc--hhHHHhhcc------cccceEEE--ECCEE----------
Confidence 6788999997754 334445553 5556665533 223555555 45999997 33421
Q ss_pred CCCHHHHHHHHHHh
Q 009206 239 ELSVDAVTDWFATA 252 (540)
Q Consensus 239 ~~~~~~i~~fi~~~ 252 (540)
-.+..+|++|+.++
T Consensus 57 l~dS~~I~~yL~~~ 70 (75)
T PF13417_consen 57 LTDSAAIIEYLEER 70 (75)
T ss_dssp EESHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHH
Confidence 13578999999876
No 417
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.68 E-value=65 Score=30.74 Aligned_cols=42 Identities=26% Similarity=0.169 Sum_probs=31.1
Q ss_pred HHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccccC--CCCHHHHHHHHHHh
Q 009206 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEG--ELSVDAVTDWFATA 252 (540)
Q Consensus 201 ~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y~G--~~~~~~i~~fi~~~ 252 (540)
.++++++ +.|||||.+-.+|+- +..=.| -.+.++++.++...
T Consensus 165 ~l~~rlg------~~GfPTl~le~ng~~----~~l~~g~y~~~~~~~~arl~~~ 208 (212)
T COG3531 165 RLMQRLG------AAGFPTLALERNGTM----YVLGTGAYFGSPDAWLARLAQR 208 (212)
T ss_pred HHHHHhc------cCCCCeeeeeeCCce----EeccCCcccCCcHHHHHHHHHH
Confidence 4889999 889999999998853 121134 45778888888765
No 418
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=27.41 E-value=1.5e+02 Score=23.51 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=26.8
Q ss_pred ccccccccCccCCCCHHHHHHHHHHHHHhcCCC
Q 009206 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSG 68 (540)
Q Consensus 36 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD 68 (540)
++|.-+++|+++.|+..||+.|-++.+++..--
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGt 34 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGT 34 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence 456678899999999999999988887776433
No 419
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=27.19 E-value=4.1e+02 Score=22.92 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=28.5
Q ss_pred HHHHHcCCCCC-CEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 009206 321 IWWNTFEVESA-PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (540)
Q Consensus 321 ~l~~~f~V~~~-Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~ 362 (540)
.+.++|++... -++++....+.....+....+.++|.+.|..
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 79999998752 3444444333333447788899999998876
No 420
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=26.90 E-value=94 Score=30.44 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=31.3
Q ss_pred cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhh
Q 009206 319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 319 ~~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
...+++++||.+.|+++ +.++. ...|..+.+.|.++|+..
T Consensus 191 ~~~la~~lgi~gTPtiv-~~~G~----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 191 HYALGVQFGVQGTPAIV-LSNGT----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHHHHcCCccccEEE-EcCCe----EeeCCCCHHHHHHHHHHc
Confidence 35789999999999988 54432 357888889999998764
No 421
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=23.60 E-value=2.4e+02 Score=25.03 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHHhCCCCccceeeeeeEEEEeCCCC-------CCCCCcccccCCCCHHHHHHHHHHh
Q 009206 202 LAERKPIGQIFFRRGLPSLVAFPPGC-------KSSDCMTRFEGELSVDAVTDWFATA 252 (540)
Q Consensus 202 l~~~~~~~~~~~V~~~Ptl~~f~~g~-------~~~~~~~~y~G~~~~~~i~~fi~~~ 252 (540)
+-++|+ |+.+|++++-.++. -.+..+..-.|..+.+.-.+.+.+.
T Consensus 63 lF~~f~------I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 63 WFKQFD------ITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred HHhhcC------ceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 778888 99999999998763 0011122335888877777666654
No 422
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=23.53 E-value=1.9e+02 Score=26.61 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=25.5
Q ss_pred EEEEEeeccccHHHHHHcCCCCCCEEEEEeCCCC
Q 009206 309 FAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (540)
Q Consensus 309 f~~v~~~~~~~~~l~~~f~V~~~Ptlv~fk~~~~ 342 (540)
-.++-..+...+++..+|+|++.|++++.++.+.
T Consensus 94 W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 94 WLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGT 127 (157)
T ss_pred eEEecCCCHHHHHHHHhcccCcCceeEEecCCCC
Confidence 3444444544578999999999999999987653
No 423
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.06 E-value=1.5e+02 Score=28.81 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=29.5
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhh
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi~~~ 363 (540)
..+...+||.+.||+++-. . .+.|..+..+|.+.|...
T Consensus 205 ~~~a~~~gv~gTPt~~v~~---~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGTPTFIVNG---K---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcCCeEEECC---e---eecCCCCHHHHHHHHHHh
Confidence 4688999999999988842 2 578887888888887653
No 424
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=22.63 E-value=1e+02 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.015 Sum_probs=12.8
Q ss_pred EEEecCCCCccCChHHHH
Q 009206 159 QVYSDGSYLCGQFSGAWK 176 (540)
Q Consensus 159 ~FYapwC~~C~~l~p~~~ 176 (540)
.|+.++|+.|.+..-..+
T Consensus 3 ly~~~~~~~~~~~~~~l~ 20 (71)
T cd00570 3 LYYFPGSPRSLRVRLALE 20 (71)
T ss_pred EEeCCCCccHHHHHHHHH
Confidence 577899999986554433
No 425
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=22.57 E-value=4.1e+02 Score=22.78 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=27.9
Q ss_pred HHHHHHcCCCCC---------CEEEEEeCCCCceeeecCCCChhHHHHH
Q 009206 320 SIWWNTFEVESA---------PAIVFLKDPGVKPVVYYGSFNNSRLSEV 359 (540)
Q Consensus 320 ~~l~~~f~V~~~---------Ptlv~fk~~~~~~~~y~G~~~~~~l~~f 359 (540)
..+.+.||+... |+.+++...+.....+.|......+.+.
T Consensus 90 ~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 90 GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 468889999876 8888887666555556777655555443
No 426
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=21.76 E-value=4.9e+02 Score=22.27 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=18.5
Q ss_pred HHHHHHcCCCCCCEEEEEeC
Q 009206 320 SIWWNTFEVESAPAIVFLKD 339 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~ 339 (540)
+.+.++|+|+..|++++-++
T Consensus 61 P~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 61 PRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred hhHHhhCCceEcCEEEEEcC
Confidence 57999999999999999987
No 427
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.27 E-value=3.8e+02 Score=20.64 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=36.1
Q ss_pred EEEEecCCCCccCChHHHHHHHHHHhcccceeeeeccchh-hhhHHHHhCCCCccceeeeeeEEEEeCCCCCCCCCcccc
Q 009206 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (540)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~~~v~~Vdc~~~~-~~~~l~~~~~~~~~~~V~~~Ptl~~f~~g~~~~~~~~~y 236 (540)
..++.++|+.|.+..-..++ +|. .+-.+++.... ....+-+..+ -..+|+|+.-.+|. .
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~-----~gi-~y~~~~v~~~~~~~~~~~~~~p------~~~vP~l~~~~~~~------~-- 62 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE-----LEL-DVILYPCPKGSPKRDKFLEKGG------KVQVPYLVDPNTGV------Q-- 62 (77)
T ss_pred eEecCCCCchHHHHHHHHHH-----cCC-cEEEEECCCChHHHHHHHHhCC------CCcccEEEeCCCCe------E--
Confidence 45566899999764422221 232 22234443221 1122333334 45899985422221 1
Q ss_pred cCCCCHHHHHHHHHHh
Q 009206 237 EGELSVDAVTDWFATA 252 (540)
Q Consensus 237 ~G~~~~~~i~~fi~~~ 252 (540)
-....+|..|+.+.
T Consensus 63 --l~es~~I~~yL~~~ 76 (77)
T cd03041 63 --MFESADIVKYLFKT 76 (77)
T ss_pred --EEcHHHHHHHHHHh
Confidence 13467888887654
No 428
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=21.02 E-value=36 Score=28.55 Aligned_cols=18 Identities=0% Similarity=-0.324 Sum_probs=13.4
Q ss_pred EEEEecCCCCccCChHHH
Q 009206 158 IQVYSDGSYLCGQFSGAW 175 (540)
Q Consensus 158 V~FYapwC~~C~~l~p~~ 175 (540)
..|+.|+|+.|++.....
T Consensus 2 ~iY~~~~C~~c~ka~~~L 19 (105)
T cd02977 2 TIYGNPNCSTSRKALAWL 19 (105)
T ss_pred EEEECCCCHHHHHHHHHH
Confidence 467889999998765333
No 429
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=20.17 E-value=1.1e+02 Score=28.76 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.7
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHH
Q 009206 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~~~~~~y~G~~~~~~l~~fi 360 (540)
..++.++||.+.|+++ ++++. ...|..+.+.|.+++
T Consensus 162 ~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~L 197 (197)
T cd03020 162 LALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhhC
Confidence 5789999999999997 65432 256777777776653
No 430
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=20.09 E-value=4.4e+02 Score=23.80 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=18.9
Q ss_pred HHHHHHcCCCCCCEEEEEeCCC
Q 009206 320 SIWWNTFEVESAPAIVFLKDPG 341 (540)
Q Consensus 320 ~~l~~~f~V~~~Ptlv~fk~~~ 341 (540)
..+..+|++.+.|+++++...+
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G 123 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDG 123 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCC
Confidence 4799999999999999997644
Done!