Query 009210
Match_columns 540
No_of_seqs 233 out of 1779
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 21:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1.4E-78 3.1E-83 656.9 39.8 400 75-540 67-468 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 7.5E-62 1.6E-66 490.8 28.6 328 126-539 28-355 (536)
3 PLN03192 Voltage-dependent pot 100.0 6.8E-61 1.5E-65 547.8 39.5 371 75-540 51-423 (823)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 4.3E-56 9.4E-61 452.7 23.9 388 76-540 208-597 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 5.6E-50 1.2E-54 409.5 23.2 357 75-539 217-575 (815)
6 KOG3713 Voltage-gated K+ chann 99.7 2.3E-17 5.1E-22 169.7 15.4 61 369-430 379-441 (477)
7 PF00520 Ion_trans: Ion transp 99.3 8.7E-12 1.9E-16 117.8 12.4 193 131-415 1-200 (200)
8 KOG1545 Voltage-gated shaker-l 99.0 2E-10 4.4E-15 113.5 4.2 45 370-415 396-442 (507)
9 PF07885 Ion_trans_2: Ion chan 98.8 6.4E-08 1.4E-12 78.1 9.7 54 366-420 23-78 (79)
10 KOG1420 Ca2+-activated K+ chan 98.6 6.4E-08 1.4E-12 100.8 7.8 125 366-501 287-418 (1103)
11 KOG1419 Voltage-gated K+ chann 98.6 4.5E-07 9.7E-12 94.8 13.4 86 365-458 267-354 (654)
12 KOG4390 Voltage-gated A-type K 98.5 3.8E-09 8.2E-14 105.4 -6.1 54 366-420 355-414 (632)
13 PRK10537 voltage-gated potassi 97.9 0.00016 3.5E-09 76.1 13.7 53 366-419 167-221 (393)
14 PF08412 Ion_trans_N: Ion tran 97.7 2.6E-05 5.6E-10 61.9 3.2 31 77-107 38-68 (77)
15 KOG3684 Ca2+-activated K+ chan 97.1 0.033 7.2E-07 58.1 17.1 88 365-461 285-374 (489)
16 KOG0614 cGMP-dependent protein 96.8 0.0015 3.4E-08 68.7 4.9 53 487-539 268-320 (732)
17 PF01007 IRK: Inward rectifier 96.7 0.011 2.3E-07 61.0 10.3 58 366-424 83-144 (336)
18 smart00100 cNMP Cyclic nucleot 96.5 0.0047 1E-07 52.1 5.4 43 498-540 1-43 (120)
19 KOG1418 Tandem pore domain K+ 96.4 0.0044 9.4E-08 65.7 5.2 56 368-424 116-173 (433)
20 KOG2302 T-type voltage-gated C 96.1 0.1 2.2E-06 58.9 14.2 113 49-197 1079-1201(1956)
21 cd00038 CAP_ED effector domain 95.9 0.015 3.2E-07 48.7 5.3 43 498-540 1-43 (115)
22 KOG1113 cAMP-dependent protein 94.8 0.05 1.1E-06 55.1 5.6 50 490-539 121-170 (368)
23 PLN03223 Polycystin cation cha 94.7 2.3 5.1E-05 50.5 19.0 100 394-497 1397-1517(1634)
24 KOG0614 cGMP-dependent protein 94.3 0.048 1E-06 57.9 4.4 56 484-539 147-202 (732)
25 KOG1113 cAMP-dependent protein 94.0 0.05 1.1E-06 55.1 3.6 53 486-538 235-287 (368)
26 KOG4404 Tandem pore domain K+ 92.0 0.19 4.1E-06 50.4 4.3 59 367-425 186-253 (350)
27 KOG3827 Inward rectifier K+ ch 92.0 0.54 1.2E-05 48.3 7.6 55 367-422 112-170 (400)
28 COG4709 Predicted membrane pro 91.3 1.2 2.6E-05 41.4 8.4 81 430-512 4-88 (195)
29 KOG4404 Tandem pore domain K+ 90.7 0.079 1.7E-06 53.0 0.2 53 366-419 79-133 (350)
30 PRK11161 fumarate/nitrate redu 88.9 0.64 1.4E-05 45.2 5.1 47 493-539 15-62 (235)
31 KOG3193 K+ channel subunit [In 88.2 0.89 1.9E-05 48.5 5.7 28 369-397 219-248 (1087)
32 PF08006 DUF1700: Protein of u 85.8 4.7 0.0001 37.7 8.8 57 430-488 4-64 (181)
33 KOG2301 Voltage-gated Ca2+ cha 85.6 5.3 0.00011 49.3 11.0 115 127-287 872-986 (1592)
34 KOG1418 Tandem pore domain K+ 83.5 0.35 7.5E-06 51.1 -0.0 45 367-412 242-296 (433)
35 KOG3614 Ca2+/Mg2+-permeable ca 82.0 72 0.0016 38.5 17.6 54 396-449 1019-1074(1381)
36 PLN03192 Voltage-dependent pot 80.5 82 0.0018 36.9 18.1 46 443-493 357-402 (823)
37 KOG2301 Voltage-gated Ca2+ cha 78.7 58 0.0013 40.6 16.2 48 127-204 473-520 (1592)
38 PF14377 DUF4414: Domain of un 74.6 4.8 0.0001 34.3 4.3 44 444-487 52-105 (108)
39 PRK09391 fixK transcriptional 57.0 9.5 0.00021 37.0 3.0 32 508-539 32-63 (230)
40 PF07697 7TMR-HDED: 7TM-HD ext 54.4 47 0.001 31.6 7.5 59 474-533 146-207 (222)
41 PF13314 DUF4083: Domain of un 52.9 69 0.0015 23.9 6.1 49 394-442 6-57 (58)
42 PF00060 Lig_chan: Ligand-gate 49.8 23 0.0005 31.2 4.1 73 365-443 42-115 (148)
43 KOG3676 Ca2+-permeable cation 49.7 3.7E+02 0.0079 31.0 14.0 71 382-453 605-681 (782)
44 KOG2302 T-type voltage-gated C 49.6 1.3E+02 0.0028 35.4 10.4 129 67-238 66-195 (1956)
45 KOG0498 K+-channel ERG and rel 49.5 1.2E+02 0.0026 34.8 10.4 42 474-515 371-417 (727)
46 PF02037 SAP: SAP domain; Int 49.1 37 0.00081 22.4 4.0 26 432-457 5-35 (35)
47 PF14377 DUF4414: Domain of un 48.9 39 0.00084 28.7 5.1 77 444-520 8-104 (108)
48 COG5559 Uncharacterized conser 40.7 26 0.00057 26.1 2.4 18 471-488 6-23 (65)
49 KOG0501 K+-channel KCNQ [Inorg 38.5 4.6E+02 0.01 29.2 12.1 50 473-522 499-553 (971)
50 PF08285 DPM3: Dolichol-phosph 38.0 2.3E+02 0.005 23.4 9.6 73 369-446 14-90 (91)
51 KOG2968 Predicted esterase of 37.9 19 0.00042 41.3 1.9 37 504-540 498-534 (1158)
52 PF13867 SAP30_Sin3_bdg: Sin3 37.2 68 0.0015 23.5 4.1 37 433-474 3-46 (53)
53 COG5559 Uncharacterized conser 35.3 55 0.0012 24.5 3.3 25 439-463 5-29 (65)
54 PF07146 DUF1389: Protein of u 30.8 3E+02 0.0065 28.2 9.0 79 441-519 35-141 (314)
55 KOG3609 Receptor-activated Ca2 30.4 6.7E+02 0.014 29.2 12.3 17 368-384 554-570 (822)
56 PF08016 PKD_channel: Polycyst 29.3 5.8E+02 0.013 27.1 11.6 20 179-199 234-253 (425)
57 PRK06771 hypothetical protein; 28.1 2.5E+02 0.0055 23.2 6.4 48 408-455 14-61 (93)
58 cd07313 terB_like_2 tellurium 27.6 2.8E+02 0.0061 22.7 7.1 82 431-513 19-103 (104)
59 PF14841 FliG_M: FliG middle d 25.4 99 0.0022 24.5 3.6 41 470-518 30-70 (79)
60 cd07178 terB_like_YebE telluri 25.2 3.5E+02 0.0077 22.2 7.1 75 431-515 19-94 (95)
61 PF00520 Ion_trans: Ion transp 24.2 1.9E+02 0.004 26.1 6.0 25 263-287 100-124 (200)
62 smart00513 SAP Putative DNA-bi 24.1 1E+02 0.0022 20.2 3.0 25 433-457 6-35 (35)
63 PF10047 DUF2281: Protein of u 22.5 75 0.0016 24.4 2.3 23 442-464 9-31 (66)
64 PF10011 DUF2254: Predicted me 22.0 3.5E+02 0.0076 28.3 8.0 75 364-441 97-175 (371)
65 PF13623 SurA_N_2: SurA N-term 21.9 1.7E+02 0.0037 26.3 4.9 45 398-442 10-67 (145)
66 PF10281 Ish1: Putative stress 21.8 1.2E+02 0.0026 20.3 3.0 15 434-448 7-21 (38)
67 KOG3966 p53-mediated apoptosis 21.7 2.6E+02 0.0057 27.9 6.3 17 6-22 22-38 (360)
68 KOG0500 Cyclic nucleotide-gate 21.6 1.1E+03 0.023 25.8 15.1 84 409-516 216-306 (536)
69 PF02268 TFIIA_gamma_N: Transc 21.4 1.8E+02 0.0039 21.1 3.9 32 431-462 14-45 (49)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-78 Score=656.87 Aligned_cols=400 Identities=38% Similarity=0.718 Sum_probs=350.2
Q ss_pred CcccCCCChhHHHHHHHHHHHHHHHHhhcchhhheeeeccccceeeecCcchhhHHHHHHHHHHHHHHHHHHhhheeEee
Q 009210 75 GQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAA 154 (540)
Q Consensus 75 ~~vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Di~l~F~t~y~~ 154 (540)
..+++|.|+++++||.+++++++++++++|++|+++.......| .|......+.+++.++|++|++||+++|+|||++
T Consensus 67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~ 144 (727)
T KOG0498|consen 67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD 144 (727)
T ss_pred ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence 34999999999999999999999999999999999988777777 7777888899999999999999999999999998
Q ss_pred cCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhhhhhccccccccchHHHHHHHHHHHHHHhH
Q 009210 155 YGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQY 234 (540)
Q Consensus 155 ~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~llr~~~l~~r 234 (540)
++. -++| .| |++||+||+ |+||++|++|++|+++++.|..+. ..+...-...+..+-+++|
T Consensus 145 ~~s----~elV-~d--------pk~IA~rYl--~twFiiDlis~lP~~~i~~~~~~~----~~~~~~~~~~l~~il~~~r 205 (727)
T KOG0498|consen 145 PSS----YELV-DD--------PKKIAKRYL--KTWFLIDLISTLPFDQIVVLVVIG----STSLALESTILVGILLLQR 205 (727)
T ss_pred CCC----ceee-eC--------HHHHHHHHH--hhhHHHHHHHhcChhhheeeeeec----ccchhhhHHHHHHHHHHHH
Confidence 721 1466 65 999999999 999999999999999998876541 1111111212333335568
Q ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhccCCCcccccccCCCc
Q 009210 235 LPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPI 314 (540)
Q Consensus 235 l~Rl~Rv~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aCiw~~i~~~~~~~~~~~~c~~~~~c~~~~l~~~~~~ 314 (540)
++|+.|+.++++++++..++++.++|..++++++++++++||.||+||++|..+..+||+++
T Consensus 206 L~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------ 267 (727)
T KOG0498|consen 206 LPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------ 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------------------
Confidence 99999999999999999999999999987899999999999999999999998887776543
Q ss_pred ccCcccccccccccccccccccccccccCCCCCcccchhhhhhhccCchhhhHHHHHHHHHHhhhcC--ccCccccCchh
Q 009210 315 YYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWL 392 (540)
Q Consensus 315 ~y~~~~~~~~~~~~sW~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~s~~~~Yl~slYwai~TmtT--yGDi~p~t~~~ 392 (540)
+|.........|.. ..|++|. .+++.+|++|+||+++|||| ||+++|.+. .
T Consensus 268 --------------tw~~~l~~~~~~~~--~~~~fg~----------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~-~ 320 (727)
T KOG0498|consen 268 --------------TWLGSLGRLLSCYN--LSFTFGI----------YSLALKYVYALYWGLSTLSTVGYGLVHANNM-G 320 (727)
T ss_pred --------------ccccccccccccCc--ccccccc----------hhHHHHHHHHHHHHhhHhhhccCCccCCCCc-H
Confidence 33332111111221 1144554 45667999999999999999 899999987 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhcCCCHHHH
Q 009210 393 EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEM 472 (540)
Q Consensus 393 E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~i 472 (540)
|++|+|++|++|.++||++||||+++++..+.+..+|+.|+.++++||++++||++||+||++|++|+|...+|+||+++
T Consensus 321 E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~l 400 (727)
T KOG0498|consen 321 EKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEEL 400 (727)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEeC
Q 009210 473 ISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 473 l~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
|++||..||++|..|+|.++|++||+|+++|+++|.+|+.+||+++|.|||+|+++||+.++||||+.
T Consensus 401 L~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~r 468 (727)
T KOG0498|consen 401 LQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVR 468 (727)
T ss_pred HHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999973
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-62 Score=490.83 Aligned_cols=328 Identities=20% Similarity=0.350 Sum_probs=283.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhheeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhh
Q 009210 126 AITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIV 205 (540)
Q Consensus 126 ~~~~~~~~~~~d~~F~~Di~l~F~t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~ 205 (540)
...|..+|++.|++|++|++++.+|||++ +|.+| +| -++.++||+.| ..|.+|++|.+|+|+++
T Consensus 28 ~~~wl~ld~~~D~vyllDi~v~~R~gyle------qGllV-~~--------~~Kl~~hY~~s-~~f~lD~l~liP~D~l~ 91 (536)
T KOG0500|consen 28 LENWLPLDYLFDFVYLLDIIVRSRTGYLE------QGLLV-KD--------TSKLRKHYVHS-TQFKLDVLSLIPLDLLL 91 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHh------cCeee-hh--------hHHHHHHHHHh-hhhhhhhhhhcchhHHh
Confidence 35688999999999999999999999984 59999 76 99999999985 88999999999999997
Q ss_pred hhhccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009210 206 LWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLG 285 (540)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~llr~~~l~~rl~Rl~Rv~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aCiw~~i~ 285 (540)
.+.... . +.| ++|++|++|++.++.+-+..+.+ +++++ +.+++..+++++||.||+||+|+
T Consensus 92 ~~~~~~---------~---~~r----~nRllk~yRl~~F~~rTetrT~~--Pn~fr-i~~lv~~~~ilfHWNaClYf~iS 152 (536)
T KOG0500|consen 92 FKDGSA---------S---LER----LNRLLKIYRLFEFFDRTETRTTY--PNAFR-ISKLVHYCLILFHWNACLYFLIS 152 (536)
T ss_pred hcCCcc---------h---HHH----HHHHHHHHHHHHHHHHhccccCC--chHHH-HHHHHHHHHHHHHHhhHHHHhhh
Confidence 653211 1 112 34677889999999888887776 67764 56666666789999999999997
Q ss_pred hhhhhhhHHHhhhccCCCcccccccCCCcccCcccccccccccccccccccccccccCCCCCcccchhhhhhhccCchhh
Q 009210 286 IQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRL 365 (540)
Q Consensus 286 ~~~~~~~~~~~c~~~~~c~~~~l~~~~~~~y~~~~~~~~~~~~sW~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~s~~ 365 (540)
.. .|+| ..+|....-..+ .++.+ ..+++.
T Consensus 153 ~~--------------------------~g~~---------~d~wvY~~i~d~---------~~~~c-------~~~n~~ 181 (536)
T KOG0500|consen 153 KA--------------------------IGFT---------TDDWVYPKINDP---------EFATC-------DAGNLT 181 (536)
T ss_pred Hh--------------------------cCcc---------ccccccCCccCc---------ccccc-------chhHHH
Confidence 52 3343 335887531110 11111 235678
Q ss_pred hHHHHHHHHHHhhhcCccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhCCC
Q 009210 366 EKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQL 445 (540)
Q Consensus 366 ~~Yl~slYwai~TmtTyGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~~l 445 (540)
++|+.|+|||..||||.|+.+|+.+..|.+|.|+-.++|+++||-++|+|+++++|+|+.+.+|+++||.+++||+.|++
T Consensus 182 ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV 261 (536)
T KOG0500|consen 182 REYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKV 261 (536)
T ss_pred HHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998866555999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEE
Q 009210 446 PQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVV 525 (540)
Q Consensus 446 p~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I 525 (540)
|..||.||.+||+|.|.+++..||+++++.||+.||+||+.++|.+.|+||++|++|+++|+.+|+.+|||++|+|||+|
T Consensus 262 ~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyI 341 (536)
T KOG0500|consen 262 PKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYI 341 (536)
T ss_pred cHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcCCeEEEEe
Q 009210 526 RFKSNILINITTVT 539 (540)
Q Consensus 526 ~~~Gd~~~~mYfI~ 539 (540)
+++||+|.|||+|.
T Consensus 342 CrKGdvgkEMyIVk 355 (536)
T KOG0500|consen 342 CRKGDVGKEMYIVK 355 (536)
T ss_pred EecCcccceEEEEE
Confidence 99999999999985
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=6.8e-61 Score=547.80 Aligned_cols=371 Identities=18% Similarity=0.324 Sum_probs=308.0
Q ss_pred CcccCCCChhHHHHHHHHHHHHHHHHhhcchhhheeeeccccceeeecCcchhhHHHHHHHHHHHHHHHHHHhhheeEee
Q 009210 75 GQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAA 154 (540)
Q Consensus 75 ~~vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Di~l~F~t~y~~ 154 (540)
..+|+|.|+++++||.+++++++++++++|+.+.+. .. .....+.++|.++|++|++||+++|+|||+|
T Consensus 51 ~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~--~~---------~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d 119 (823)
T PLN03192 51 GWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFL--NA---------SPKRGLEIADNVVDLFFAVDIVLTFFVAYID 119 (823)
T ss_pred CeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHee--CC---------CCCCCeeeHHHHHHHHHHHHHHhheeEEEEe
Confidence 559999999999999999999999999999875432 11 0112357789999999999999999999997
Q ss_pred cCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhhhhhccccccccchHHHHHHHHHHHHHHhH
Q 009210 155 YGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQY 234 (540)
Q Consensus 155 ~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~llr~~~l~~r 234 (540)
+ .+|.+| +| |++|++||+ |+||++|++|++|++++...+ .+. .......++++++ |
T Consensus 120 ~----~~~~lV-~d--------~~~I~~~Yl--~~~f~~Dlis~lP~~~i~~~~-~~~----~~~~~~~~~l~ll----r 175 (823)
T PLN03192 120 P----RTQLLV-RD--------RKKIAVRYL--STWFLMDVASTIPFQALAYLI-TGT----VKLNLSYSLLGLL----R 175 (823)
T ss_pred C----CCcEEE-eC--------HHHHHHHHH--HHhHHHHHHHHhHHHHHHHHh-cCC----ccchHHHHHHHHH----H
Confidence 6 346677 66 999999999 899999999999998774322 111 1111223334333 3
Q ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhccCCCcccccccCCCc
Q 009210 235 LPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPI 314 (540)
Q Consensus 235 l~Rl~Rv~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aCiw~~i~~~~~~~~~~~~c~~~~~c~~~~l~~~~~~ 314 (540)
++|+.|+.+++.++++...+ ...+.+++++++++++++||+||+||+++....
T Consensus 176 l~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~------------------------- 228 (823)
T PLN03192 176 FWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADRYP------------------------- 228 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------------------
Confidence 44666777777776654332 233445667677777899999999999974210
Q ss_pred ccCcccccccccccccccccccccccccCCCCCcccchhhhhhhccCchhhhHHHHHHHHHHhhhcC--ccCccccCchh
Q 009210 315 YYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWL 392 (540)
Q Consensus 315 ~y~~~~~~~~~~~~sW~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~s~~~~Yl~slYwai~TmtT--yGDi~p~t~~~ 392 (540)
..+.+|+.... +...+.+++.+|++|+|||++|||| |||++|.|+ .
T Consensus 229 ----------~~~~~Wi~~~~---------------------~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~-~ 276 (823)
T PLN03192 229 ----------HQGKTWIGAVI---------------------PNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNT-I 276 (823)
T ss_pred ----------CCCCchHHHhh---------------------hccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCcc-c
Confidence 13457875411 1125678899999999999999999 999999987 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhcCCCHHHH
Q 009210 393 EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEM 472 (540)
Q Consensus 393 E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~i 472 (540)
|+++++++|++|++++||++|++++++.+.+.++.+|+++|+.+++||+++++|++||+||++||+|.|+. ...+++++
T Consensus 277 E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~ 355 (823)
T PLN03192 277 EMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQL 355 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984 46889999
Q ss_pred HhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEeC
Q 009210 473 ISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 473 l~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
++.||++||.+|..+++.+.++++|+|++++++++.+|+..++++.|.|||.|+.+||.+++||||.+
T Consensus 356 l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~ 423 (823)
T PLN03192 356 IDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVS 423 (823)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-56 Score=452.66 Aligned_cols=388 Identities=17% Similarity=0.333 Sum_probs=312.2
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHhhcchhhheeeeccccceeeecCcchhhHHHHHHHHHHHHHHHHHHhhheeEeec
Q 009210 76 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAY 155 (540)
Q Consensus 76 ~vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Di~l~F~t~y~~~ 155 (540)
.+|...+.|+..||.+++++.+|+++++|+-.. +-.... ....|.++|.++|++|++||++||+|.|+-+
T Consensus 208 HIiLHYcaFKt~WDWvIL~LTFYTAimVPyNva--FKnk~~--------~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGP 277 (971)
T KOG0501|consen 208 HIILHYCAFKTIWDWVILILTFYTAIMVPYNVA--FKNKQR--------NNVSWLVVDSIVDVIFFVDIVLNFHTTFVGP 277 (971)
T ss_pred eEEEeeehhhhHHHHHHHHHHHHHHheeeeeee--eccccc--------CceeEEEecchhhhhhhhhhhhhcceeeecC
Confidence 478889999999999999999999999995321 111110 1245778999999999999999999999966
Q ss_pred CcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhhhhhccccccccchHHHHHHHHHHHHHHhHH
Q 009210 156 GVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYL 235 (540)
Q Consensus 156 ~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~llr~~~l~~rl 235 (540)
.||+| .| ||.|+.+|+ |+||++|++|++|+|++..+--.. .+...++..|+++
T Consensus 278 -----gGEVv-sd--------PkvIRmNYl--KsWFvIDLLSCLPYDi~naF~~~d-----egI~SLFSaLKVV------ 330 (971)
T KOG0501|consen 278 -----GGEVV-SD--------PKVIRMNYL--KSWFVIDLLSCLPYDIFNAFERDD-----EGIGSLFSALKVV------ 330 (971)
T ss_pred -----CCcee-cC--------hhHHhHHHH--HHHHHHHHHhcccHHHHHHhhccc-----ccHHHHHHHHHHH------
Confidence 58888 76 999999999 999999999999999886432111 1222333344333
Q ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhccCCCcccccccCCCcc
Q 009210 236 PKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIY 315 (540)
Q Consensus 236 ~Rl~Rv~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aCiw~~i~~~~~~~~~~~~c~~~~~c~~~~l~~~~~~~ 315 (540)
||+|+.|..+++.....| ..+ .++++++.|.+++||+||+||.||.+|.-. +..+.
T Consensus 331 -RLLRLGRVaRKLD~YlEY--GAA--~LvLLlC~y~lvAHWlACiWysIGd~ev~~-----------------~~~n~-- 386 (971)
T KOG0501|consen 331 -RLLRLGRVARKLDHYLEY--GAA--VLVLLLCVYGLVAHWLACIWYSIGDYEVRD-----------------EMDNT-- 386 (971)
T ss_pred -HHHHHHHHHHHHHHHHHh--hHH--HHHHHHHHHHHHHHHHHHhheeccchheec-----------------ccccc--
Confidence 334444444444443333 444 356777888899999999999999765320 00111
Q ss_pred cCcccccccccccccccccccccccccCCCCCcccchhhhhhhccCchhhhHHHHHHHHHHhhhcC--ccCccccCchhh
Q 009210 316 YGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWLE 393 (540)
Q Consensus 316 y~~~~~~~~~~~~sW~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~s~~~~Yl~slYwai~TmtT--yGDi~p~t~~~E 393 (540)
-..++|+.+.... ...+|+|. .........++|....|+.|+||.++.||| +|+|.|.|+ .|
T Consensus 387 ---------i~~dsWL~kLa~~-----~~tpY~~~-~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD-~E 450 (971)
T KOG0501|consen 387 ---------IQPDSWLWKLAND-----IGTPYNYN-LSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTD-NE 450 (971)
T ss_pred ---------cccchHHHHHHhh-----cCCCceec-cCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCcc-HH
Confidence 1234777654322 12344432 011111245677778999999999999999 999999998 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 009210 394 VVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMI 473 (540)
Q Consensus 394 ~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il 473 (540)
++|++++|++|+++||-++|++..|+++|.+..++|++.++.+.+||+-.++|+.|.+||.+|.--.|...+|+|.+++|
T Consensus 451 KiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL 530 (971)
T KOG0501|consen 451 KIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVL 530 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEeC
Q 009210 474 SNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 474 ~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
.-.|..+|++|..|+++++.+..|-|+-.+++++++|++.++.....|||.++..||..|.+.||++
T Consensus 531 ~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVs 597 (971)
T KOG0501|consen 531 GYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVS 597 (971)
T ss_pred hhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-50 Score=409.53 Aligned_cols=357 Identities=18% Similarity=0.318 Sum_probs=298.9
Q ss_pred CcccCCCC-hhHHHHHHHHHHHHHHHHhhcchhhheeeeccccceeeecCcchhhHHHHHHHHHHHHHHHHH-HhhheeE
Q 009210 75 GQVLDPRA-KWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMW-LQLKMTK 152 (540)
Q Consensus 75 ~~vi~P~s-~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Di~-l~F~t~y 152 (540)
..-|||.. ++...|-.++.+...+.+++.|+...+|+-... .-..|.+.|+++|+++++||+ ++-+.-|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~d---------N~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTAD---------NIHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccc---------cchhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 45799988 999999999888888899999998777764332 224688999999999999996 4667777
Q ss_pred eecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhhhhhccccccccchHHHHHHHHHHHHHH
Q 009210 153 AAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLF 232 (540)
Q Consensus 153 ~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~llr~~~l~ 232 (540)
+ ..|.+| .| .+...+||++| ..|-+|++|++|+|+++.+++... ++| +
T Consensus 288 v------rgG~~i-k~--------kndtrk~Yl~s-r~FklDllsiLPldllY~~~G~~p------------~wR----~ 335 (815)
T KOG0499|consen 288 V------RGGDII-KD--------KNDTRKHYLTS-RKFKLDLLSILPLDLLYLFFGFNP------------MWR----A 335 (815)
T ss_pred e------eCceEE-Ee--------chHHHHHHHHh-hhhhhhHHhhhhHHHHHHHhccch------------hhh----h
Confidence 5 247888 76 89999999984 789999999999999987654322 122 2
Q ss_pred hHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhccCCCcccccccCC
Q 009210 233 QYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKE 312 (540)
Q Consensus 233 ~rl~Rl~Rv~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aCiw~~i~~~~~~~~~~~~c~~~~~c~~~~l~~~~ 312 (540)
+|++|+.-++.+++.+++...- ..++ +++..+..+++++|+.||+||+.+.++
T Consensus 336 ~R~lK~~sF~e~~~~Le~i~s~--~y~~-RV~rT~~YmlyilHinacvYY~~Sayq------------------------ 388 (815)
T KOG0499|consen 336 NRMLKYTSFFEFNHHLESIMSK--AYIY-RVIRTTGYLLYILHINACVYYWASAYQ------------------------ 388 (815)
T ss_pred hhHHHHHHHHHHHHHHHHHhcc--hhhh-hhHHHHHHHHHHHhhhHHHHHHHHhhc------------------------
Confidence 2344555555566655554221 2222 345555556678999999999976432
Q ss_pred CcccCcccccccccccccccccccccccccCCCCCcccchhhhhhhccCchhhhHHHHHHHHHHhhhcCccCccccCchh
Q 009210 313 PIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWL 392 (540)
Q Consensus 313 ~~~y~~~~~~~~~~~~sW~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~s~~~~Yl~slYwai~TmtTyGDi~p~t~~~ 392 (540)
+.| .+.|+.... +..|++|+|||+-|++|.|..+.+++..
T Consensus 389 --glG---------~~rWVydg~-----------------------------Gn~YiRCyyfa~kt~~tiG~~P~P~~~~ 428 (815)
T KOG0499|consen 389 --GLG---------TTRWVYDGE-----------------------------GNEYIRCYYFAVKTLITIGGLPEPQTLF 428 (815)
T ss_pred --ccc---------cceeEEcCC-----------------------------CCceeeehhhHHHHHHHhcCCCCcchHH
Confidence 222 467876421 3679999999999999988877555679
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhcCCCHHHH
Q 009210 393 EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEM 472 (540)
Q Consensus 393 E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~i 472 (540)
|++|..+.-+.|+++||.+||.|-.++++.+..+..|++.||..-.||+..+||.+.|+||+.+|+|.|.+++..||+++
T Consensus 429 E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~l 508 (815)
T KOG0499|consen 429 EIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDL 508 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 473 ISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 473 l~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
++.||.+||.+++..++-..|.||.+|++|+.+.+++++.+|++.+|.|||+||++||+|.|||+|-
T Consensus 509 l~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk 575 (815)
T KOG0499|consen 509 LKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIK 575 (815)
T ss_pred HHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.3e-17 Score=169.75 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHH
Q 009210 369 LFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQ 430 (540)
Q Consensus 369 l~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~ 430 (540)
-.++|||+.|||| |||++|.|. ..++++..+++.|+++.|+-|..|-+=++...+..+..+
T Consensus 379 Pa~~WWaiVTMTTVGYGDm~P~T~-~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~ 441 (477)
T KOG3713|consen 379 PAGFWWAVVTMTTVGYGDMVPVTV-LGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKARE 441 (477)
T ss_pred cchhheeeEEEeeecccCcccccc-chHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHH
Confidence 3589999999999 999999996 999999999999999999988777666665555444333
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.34 E-value=8.7e-12 Score=117.78 Aligned_cols=193 Identities=16% Similarity=0.325 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHhhheeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhhhhhcc
Q 009210 131 ALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVI 210 (540)
Q Consensus 131 ~~~~~~d~~F~~Di~l~F~t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~ 210 (540)
++|.+++++|.+|+++++++... + +++|++ +.|.++|+++++|..........
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~------------------------~--~~~y~~-~~~~~~d~~~~~~~~~~~~~~~~ 53 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF------------------------K--RRRYFR-SWWNWFDFISVIPSIVSVILRSY 53 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC------------------------G---GCCCC-SHHHHHHHHHHHHHCCHHCCHCS
T ss_pred CChHHHHHHHHHHHHHHHHHhcc------------------------H--HHHHhc-Chhhccccccccccccccccccc
Confidence 36788999999999999986431 2 677886 47888999999999655422111
Q ss_pred ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009210 211 PALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSA 290 (540)
Q Consensus 211 ~~~~~~~~~~~~~~llr~~~l~~rl~Rl~Rv~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aCiw~~i~~~~~~ 290 (540)
+..+.....+++|+++ ++|++|+.+..+.+++....+. .....+.+.++.++++.|+.||+++.+......
T Consensus 54 ----~~~~~~~~~~~~~~l~----~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~ 124 (200)
T PF00520_consen 54 ----GSASAQSLLRIFRLLR----LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDN 124 (200)
T ss_dssp ----S--HHCHCHHHHHHHH----HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred ----ccccccceEEEEEeec----cccccccccccccccccccccc-cccccccccccccccccccccchhheecccccc
Confidence 1110001122222221 2233333333322222211111 222234455556667899999999988643211
Q ss_pred hhHHHhhhccCCCcccccccCCCcccCcccccccccccccccccccccccccCCCCCcccchhhhhhhccCchhhhHHHH
Q 009210 291 KCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILF 370 (540)
Q Consensus 291 ~~~~~~c~~~~~c~~~~l~~~~~~~y~~~~~~~~~~~~sW~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~s~~~~Yl~ 370 (540)
.++ ...+.... .....+..+.|..
T Consensus 125 ~~~---------------------------------~~~~~~~~-----------------------~~~~~~~f~~~~~ 148 (200)
T PF00520_consen 125 SCC---------------------------------DPTWDSEN-----------------------DIYGYENFDSFGE 148 (200)
T ss_dssp ---------------------------------------SS---------------------------SSTHHHHSSHHH
T ss_pred ccc---------------------------------cccccccc-----------------------ccccccccccccc
Confidence 100 00000000 0133455688999
Q ss_pred HHHHHHhhhcC--ccCcccc----CchhhHHHH-HHHHHHHHHHHHHHHHHH
Q 009210 371 PIFWGLMTLST--FGNLEST----TEWLEVVFN-IIVLTSGLLLVTMLIGNI 415 (540)
Q Consensus 371 slYwai~TmtT--yGDi~p~----t~~~E~i~~-i~~mi~G~~~~a~iig~i 415 (540)
|+||++.++|+ +||+.+. ++..+.++. ++..+.+.++++.++|.|
T Consensus 149 s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 149 SLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999 7887775 134889988 555666668888888865
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.01 E-value=2e-10 Score=113.45 Aligned_cols=45 Identities=18% Similarity=0.440 Sum_probs=40.0
Q ss_pred HHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009210 370 FPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNI 415 (540)
Q Consensus 370 ~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i 415 (540)
.|||||++|||| |||..|.|- ..+++..++.+.|++-.|.-+-.+
T Consensus 396 daFWwavVTMTTVGYGDm~P~Tv-gGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTV-GGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred ccceEEEEEEEeeccccceeccc-CceehhhHHhhhhheEecccccEE
Confidence 489999999999 999999985 999999999999999888765544
No 9
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.75 E-value=6.4e-08 Score=78.14 Aligned_cols=54 Identities=19% Similarity=0.480 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLH 420 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~ 420 (540)
..|..|+||++.|+|| |||+.|.++ .+++++++.+++|..++++.++.+++.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~-~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTP-AGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999 999999986 89999999999999999999999998875
No 10
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.64 E-value=6.4e-08 Score=100.85 Aligned_cols=125 Identities=17% Similarity=0.236 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhC
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKR 443 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~ 443 (540)
-.|-.|+|+-++||+| |||+...|. ..++|.++.++.|..+||.-+-.+..++.+-++-.-+|+..-- ++
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~-lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-------kk 358 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTT-LGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-------KK 358 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhh-hhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-------Ce
Confidence 5689999999999999 999999986 9999999999999999999999999999887665555443210 01
Q ss_pred CC--Ch-HHHHHHHHHHH-HHHHhhcCCC-HHHHHhcCChhHHHHHHHHHHHHHhhcCccccc
Q 009210 444 QL--PQ-GFRQRVRNYER-QRWAAMRGVD-ECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQH 501 (540)
Q Consensus 444 ~l--p~-~L~~rV~~y~~-y~~~~~~~~~-e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~ 501 (540)
++ -. -.-+.|..|++ +..+....+| |--+|...||+|-.| .++++...++.||++
T Consensus 359 hivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 359 HIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred eEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 10 01 11233444443 2333333445 446789999998765 457888899999975
No 11
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.62 E-value=4.5e-07 Score=94.82 Aligned_cols=86 Identities=17% Similarity=0.346 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHh
Q 009210 365 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 442 (540)
Q Consensus 365 ~~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~ 442 (540)
+.-|..|+||.+.|+|| |||.+|+| +..++.+.++.++|..+||.--|.+++=++-.-+. +.+ =++|-++
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~T-WlGr~laa~fsligiSFFALPAGILGSGfALKVQe--q~R-----QKHf~rr 338 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQT-WLGRLLAACFSLIGISFFALPAGILGSGFALKVQE--QHR-----QKHFNRR 338 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCccc-chhHHHHHHHHHHHHHHHhcccccccchhhhhhHH--HHH-----HHHHHhh
Confidence 47799999999999999 99999998 69999999999999999999888888776543221 111 1456667
Q ss_pred CCCChHHHHHHHHHHH
Q 009210 443 RQLPQGFRQRVRNYER 458 (540)
Q Consensus 443 ~~lp~~L~~rV~~y~~ 458 (540)
++.-..|..-.-+||.
T Consensus 339 r~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 339 RNPAASLIQCAWRYYA 354 (654)
T ss_pred cchHHHHHHHHHHHHh
Confidence 7777777777777764
No 12
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.47 E-value=3.8e-09 Score=105.37 Aligned_cols=54 Identities=22% Similarity=0.514 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTM----LIGNIKVFLH 420 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~----iig~i~~il~ 420 (540)
..--.+||+.++|||| |||..|.| ...++|..++.+.|+++.|. ++++++.|..
T Consensus 355 TsIPaaFWYTIVTmTTLGYGDMVp~T-IaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 355 TSIPAAFWYTIVTMTTLGYGDMVPST-IAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred ccCcHhHhhheeeeeeccccccchHH-HHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 3344689999999999 99999998 49999999999999999887 4566666653
No 13
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.90 E-value=0.00016 Score=76.10 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFL 419 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il 419 (540)
..+..|+||++.|+|| |||+.|.+. ..++++++++++|..++++.++.+...+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~-~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSE-SARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999 999999986 8999999999999999999999887644
No 14
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.72 E-value=2.6e-05 Score=61.93 Aligned_cols=31 Identities=19% Similarity=0.499 Sum_probs=29.0
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHhhcchhh
Q 009210 77 VLDPRAKWVQEWNRVFLLVCATGLFVDPLFF 107 (540)
Q Consensus 77 vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~ 107 (540)
||||.|+||.+||.++++++++.++++|+.+
T Consensus 38 IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~i 68 (77)
T PF08412_consen 38 IIHPFSKFRFYWDLIMLILLLYNLIIIPFRI 68 (77)
T ss_pred EEcCCccHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999754
No 15
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.033 Score=58.09 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHh
Q 009210 365 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 442 (540)
Q Consensus 365 ~~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~ 442 (540)
..-|+.|++....|.-+ |||+.|.|. -.+..+++.-++|+++.|.+++.++.=+.- .+--+.+++||-+
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~Ty-cGr~v~l~tGivGa~~sallvAvisRKLeL--------t~aEKhVhNFMmD 355 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTY-CGRGVALLTGIVGAGCSSLLVAVIARKLEL--------TKAEKHVHNFMMD 355 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCcc-ccchHHHHhhhhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 36688888888878777 999999998 999999999999999999999988765543 3333567777777
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 009210 443 RQLPQGFRQRVRNYERQRW 461 (540)
Q Consensus 443 ~~lp~~L~~rV~~y~~y~~ 461 (540)
.++-+++++-..+=++..|
T Consensus 356 tqLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777776666555555555
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=96.77 E-value=0.0015 Score=68.72 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=50.3
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 487 ~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.-+.++|+++|+|+++|++.|..++..|+...|-.|++|+++|+.|+..|+|+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~ 320 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIIS 320 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEe
Confidence 44678999999999999999999999999999999999999999999999986
No 17
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.70 E-value=0.011 Score=61.02 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhhhcC--ccC--ccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 366 EKILFPIFWGLMTLST--FGN--LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGD--i~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
..+..+|++|+.|+|| ||. ++|... .-.++.++-+++|.++.|+++|-+-.=++.-.+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~-~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECP-YAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 5688899999999999 998 556654 667778888999999999999988766655443
No 18
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=96.50 E-value=0.0047 Score=52.07 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=40.7
Q ss_pred ccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEeC
Q 009210 498 LFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 498 lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
+|.++++..++.++..++...|.+|++|+++||..+.+|||.+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~ 43 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILS 43 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEe
Confidence 5788999999999999999999999999999999999999864
No 19
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.0044 Score=65.73 Aligned_cols=56 Identities=20% Similarity=0.471 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 368 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 368 Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
+..|+|+|++++|| ||++.|.|. ..++++|+..++|.-++..+++.++..+...-.
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~-~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTD-AGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcC-cchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55699999999999 999999987 899999999999999999999999999876543
No 20
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.15 E-value=0.1 Score=58.91 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=59.3
Q ss_pred hhhhcCcccccccccccccccCCCCcCcccCCCChhHHH---------HHHHHHHHHHHHHhhcchhhheeeecccccee
Q 009210 49 ERCKNGRRRDMFSGICGRRRRSNWSFGQVLDPRAKWVQE---------WNRVFLLVCATGLFVDPLFFYALSISETCMCL 119 (540)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~r~~~w~~~~vi~P~s~~~~~---------Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 119 (540)
++|+.+|......+...-.-+..|. ..++.|+++|+.. .|.++++++++..+..-++ -|...+
T Consensus 1079 ~k~~r~r~~i~~~kp~~c~~r~~Ws-~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp~i~~----- 1150 (1956)
T KOG2302|consen 1079 QKCKRVRKQITRYKPHWCNLRELWS-KYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RPAIVE----- 1150 (1956)
T ss_pred HHHHhhhhhhcccCCcchhHHHHHH-HHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--cccccc-----
Confidence 5677777654432222112234662 5689999999854 4444444333333221111 111100
Q ss_pred eecCcchhhHHHHHHHHHHHHHHHHHHhhh-eeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhh
Q 009210 120 FVDGWFAITVTALRCMTDLLHVWNMWLQLK-MTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFV 197 (540)
Q Consensus 120 ~~~~~~~~~~~~~~~~~d~~F~~Di~l~F~-t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls 197 (540)
.......+.+-++|+-.+|+..+.++-. .|.+ -|+ ..|++| +|=.+|.+-
T Consensus 1151 --~s~EriFltlsnyIFtaIfV~Em~lKVVALGl~-------fge------------------~aYl~s-sWN~LDgfl 1201 (1956)
T KOG2302|consen 1151 --GSTERIFLTLSNYIFTAIFVVEMTLKVVALGLY-------FGE------------------QAYLRS-SWNVLDGFL 1201 (1956)
T ss_pred --CcceEEEEEecchHHHHHHHHHHHHHHHhhhhc-------cch------------------HHHHHH-HHHhhhHHH
Confidence 0111123344567888999999988764 3432 133 458885 887777543
No 21
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=95.88 E-value=0.015 Score=48.69 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=40.6
Q ss_pred ccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEeC
Q 009210 498 LFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 498 lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
+|+.+++..+..++..++...+.||++|+.+|+..+.+|||.+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~ 43 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLS 43 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEe
Confidence 5788999999999999999999999999999999999999964
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=94.78 E-value=0.05 Score=55.10 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=46.8
Q ss_pred HHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 490 ~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.+.+++.-+|++++++-+.++...|.+..+..|+.|+++||.|+-+|+|.
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~ 170 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVID 170 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEe
Confidence 35777888999999999999999999999999999999999999999985
No 23
>PLN03223 Polycystin cation channel protein; Provisional
Probab=94.66 E-value=2.3 Score=50.45 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH------------HhCCCChHHHHHHHHHHHHHH
Q 009210 394 VVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWM------------RKRQLPQGFRQRVRNYERQRW 461 (540)
Q Consensus 394 ~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym------------~~~~lp~~L~~rV~~y~~y~~ 461 (540)
..|..+++++..++.-++|+.+..-++.......+-...-.++-.|| ...++|+. ||++-++ .|
T Consensus 1397 IYFfSFILLV~FILLNMFIAII~DSFsEVK~d~seq~s~e~EIvDfm~~rfrslL~g~~~~~~i~~~---~~~~~lr-~w 1472 (1634)
T PLN03223 1397 IYFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETVSVHTELFPMLRDKWRSMFKGWFYKNHIPEA---RVRRQLR-IW 1472 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhhhcccccCCcH---HHHHHHH-Hh
Confidence 34555555566666666666666666655333222112222333333 34667764 3333332 34
Q ss_pred Hhhc-------CC--CHHHHHhcCChhHHHHHHHHHHHHHhhcCc
Q 009210 462 AAMR-------GV--DECEMISNLPEGLRRDIKYHLCLDLVRQVP 497 (540)
Q Consensus 462 ~~~~-------~~--~e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~ 497 (540)
+-.. .. +.++++.-+..+|-.+-+..+.++.+...|
T Consensus 1473 ~ge~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~v~~~c~~~~~ 1517 (1634)
T PLN03223 1473 KGENPDEEEEEAFREEKEKVFTYLNKELDEAGLKRVLRRCVIETY 1517 (1634)
T ss_pred cCCCCCcccchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 3111 11 134677777777777777777777665443
No 24
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=94.32 E-value=0.048 Score=57.89 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 484 IKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 484 i~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
=..++-++.|.+..|+++++..-+.+|+.+|-|.-|..|..|+++||.|+.||.++
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~a 202 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSA 202 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEee
Confidence 34566778999999999999999999999999999999999999999999999875
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=94.00 E-value=0.05 Score=55.08 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=49.6
Q ss_pred HHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEE
Q 009210 486 YHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTV 538 (540)
Q Consensus 486 ~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI 538 (540)
.-+|.+.|+++|+++.++..--..++..+.+..|.+|+.|+.+|+.|+..|+|
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i 287 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYII 287 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEe
Confidence 34678999999999999999999999999999999999999999999999997
No 26
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=91.98 E-value=0.19 Score=50.41 Aligned_cols=59 Identities=19% Similarity=0.364 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhcC--ccCcccc-C------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Q 009210 367 KILFPIFWGLMTLST--FGNLEST-T------EWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSK 425 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~-t------~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~ 425 (540)
.|..|+|+.+.|+|| +||.++- + ...=..++.+.+++|..+++..++-+.-.+..++..
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 388899999999999 9996543 2 113356788888999999999888888777776654
No 27
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=91.96 E-value=0.54 Score=48.35 Aligned_cols=55 Identities=11% Similarity=0.266 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhcC--ccC--ccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 009210 367 KILFPIFWGLMTLST--FGN--LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGD--i~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~ 422 (540)
....||-||+-|=|| ||- ++..-. .-.+..++=+++|+++-|+++|.+-.=++.-
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP-~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECP-EAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 356688899988888 997 455443 5566667778999999999999876555443
No 28
>COG4709 Predicted membrane protein [Function unknown]
Probab=91.29 E-value=1.2 Score=41.41 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhh--cCCCHHHHHhcC--ChhHHHHHHHHHHHHHhhcCcccccCCHH
Q 009210 430 QLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAM--RGVDECEMISNL--PEGLRRDIKYHLCLDLVRQVPLFQHMDDL 505 (540)
Q Consensus 430 ~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~--~~~~e~~il~~L--p~~Lr~ei~~~~~~~~l~~v~lF~~~~~~ 505 (540)
.+-++++++|++ ++|++.++.+..||+-.+++. .+.+|+|+..+| |.++-+|+..+.-.+-.+.-|=+++.+..
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 355778888887 899999999999999888753 456799999999 78888999888877888777888777765
Q ss_pred HHHHHHH
Q 009210 506 VLENICD 512 (540)
Q Consensus 506 fl~~L~~ 512 (540)
.+..+..
T Consensus 82 ii~~~~L 88 (195)
T COG4709 82 IIALIGL 88 (195)
T ss_pred HHHHHHH
Confidence 5554443
No 29
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=90.65 E-value=0.079 Score=53.02 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFL 419 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il 419 (540)
-+..-|||||.+.+|| ||.-+|.|+ ..++|+|+-.++|+-+--..+.+++.-+
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~-~GK~Fcm~Yal~Gipl~lvmFqs~gERl 133 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTD-GGKAFCMFYALVGIPLTLVMFQSIGERL 133 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCc-CceehhhhHHHhcCchHHHHHHHHHHHH
Confidence 3456799999999999 999999998 9999999999999877666666655444
No 30
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=88.86 E-value=0.64 Score=45.16 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=39.9
Q ss_pred hhcCcccccCCHHHHHHHHHhcce-eeecCCCEEEeCCCcCCeEEEEe
Q 009210 493 VRQVPLFQHMDDLVLENICDRVKS-LIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 493 l~~v~lF~~~~~~fl~~L~~~lk~-~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
+++.+.|-.++++.+..|....+. ..|.+||.|+++||..+.+|||.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~ 62 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIR 62 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEe
Confidence 444555556999999999988875 57999999999999999999985
No 31
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=88.20 E-value=0.89 Score=48.51 Aligned_cols=28 Identities=18% Similarity=0.474 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhcC--ccCccccCchhhHHHH
Q 009210 369 LFPIFWGLMTLST--FGNLESTTEWLEVVFN 397 (540)
Q Consensus 369 l~slYwai~TmtT--yGDi~p~t~~~E~i~~ 397 (540)
..|+|+.++|.+| |||..|.- +.-.++.
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~-w~sql~~ 248 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDY-WASQLCV 248 (1087)
T ss_pred eeeEEEEEEEEeecccccccccc-chhhHHH
Confidence 3588999999999 99998874 3444433
No 32
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=85.83 E-value=4.7 Score=37.72 Aligned_cols=57 Identities=23% Similarity=0.448 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh--hcCCCHHHHHhcC--ChhHHHHHHHHH
Q 009210 430 QLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAA--MRGVDECEMISNL--PEGLRRDIKYHL 488 (540)
Q Consensus 430 ~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~--~~~~~e~~il~~L--p~~Lr~ei~~~~ 488 (540)
++-+++++++++ ++|++-++++.+||+-..+. ..|.+|+++.++| |.++-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 456778899997 59999999999999988875 4567899999998 677777777554
No 33
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.60 E-value=5.3 Score=49.26 Aligned_cols=115 Identities=10% Similarity=0.148 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhheeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhhh
Q 009210 127 ITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVL 206 (540)
Q Consensus 127 ~~~~~~~~~~d~~F~~Di~l~F~t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~ 206 (540)
..+..+|++.-.+|.+.++++-- +| | -.. |+++ .|.++|++-++=.
T Consensus 872 ~~L~y~D~~Ft~iFt~Em~lK~i-a~---------G----------------f~~--y~rn-~w~~lDf~Vv~vs----- 917 (1592)
T KOG2301|consen 872 GILEYADYIFTYIFTFEMLLKWI-AY---------G----------------FFF--YFRN-AWNWLDFVVVIVS----- 917 (1592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-Hh---------H----------------HHH--HHhh-HHhhhhHHHhhhH-----
Confidence 34567889999999999999873 22 2 111 8984 8999999765422
Q ss_pred hhccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009210 207 WVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGI 286 (540)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~llr~~~l~~rl~Rl~Rv~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aCiw~~i~~ 286 (540)
++.... ........+.| |.+|.+|.+|..++.+....+ -++....+..++..+++.|.+=+++..+|+
T Consensus 918 lisl~~---~~~~~~~ik~l-------r~lRaLRPLR~i~r~~~mr~V--v~~l~~a~~~I~nv~lV~li~~fiFai~gv 985 (1592)
T KOG2301|consen 918 LISLIA---SLKILSLIKSL-------RILRALRPLRALSRFPGMRVV--VLALFGGLPEIFNVLLVCLIFWFIFAIMGV 985 (1592)
T ss_pred HHHHHH---hhhhhhHHHHH-------HHHHHHHHHHHHHHccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111100 00111222223 233444555555554442222 233344555566666666666666666665
Q ss_pred h
Q 009210 287 Q 287 (540)
Q Consensus 287 ~ 287 (540)
+
T Consensus 986 ~ 986 (1592)
T KOG2301|consen 986 Q 986 (1592)
T ss_pred H
Confidence 3
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=83.50 E-value=0.35 Score=51.11 Aligned_cols=45 Identities=22% Similarity=0.502 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhcC--ccCccccCchhhH--------HHHHHHHHHHHHHHHHHH
Q 009210 367 KILFPIFWGLMTLST--FGNLESTTEWLEV--------VFNIIVLTSGLLLVTMLI 412 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t~~~E~--------i~~i~~mi~G~~~~a~ii 412 (540)
-|+.|+|+++.++|| +||+.|.+. ..+ .+..+..++|....+.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTL-LGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCC-cceeeccccccchhHHHHHhhhhHHHHHh
Confidence 467799999999999 999999986 544 688888889988888887
No 35
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.99 E-value=72 Score=38.51 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHH--HHHHHHHHHHHHhCCCChHH
Q 009210 396 FNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAM--QLKMRNIEWWMRKRQLPQGF 449 (540)
Q Consensus 396 ~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~--~~~~~~l~~ym~~~~lp~~L 449 (540)
+++.+.+.-.++.-.+|+.++.++.+......++ -++-..+.+|=.+=-+|+++
T Consensus 1019 l~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPPf 1074 (1381)
T KOG3614|consen 1019 LVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPPF 1074 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCc
Confidence 3444444455666677777777777766555443 46777888888888888765
No 36
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=80.49 E-value=82 Score=36.85 Aligned_cols=46 Identities=9% Similarity=0.102 Sum_probs=33.4
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHh
Q 009210 443 RQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLV 493 (540)
Q Consensus 443 ~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l 493 (540)
.++|+.|+.+|..++.... +..-.+++.++++...++...+....+
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~~~~~ 402 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMKAEYI 402 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhheeee
Confidence 4689999999987765422 233468888999988888877765544
No 37
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.65 E-value=58 Score=40.63 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhheeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhh
Q 009210 127 ITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQI 204 (540)
Q Consensus 127 ~~~~~~~~~~d~~F~~Di~l~F~t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i 204 (540)
..+.+.+.++-.+|..++.+.--. +| -..|.+ ++|.++|.+-+. ++++
T Consensus 473 ~~l~~~~~vF~~lF~~Em~~ki~a----------------l~------------~~~yF~-~~~n~fD~~iv~-l~~~ 520 (1592)
T KOG2301|consen 473 YLLYLGNVVFTGLFTVEMILKIYA----------------LG------------PRNYFR-RGWNIFDLIIVL-LSLL 520 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------cC------------cHHHHh-hhcchheEEEEe-hhhH
Confidence 344555666666777777665421 22 246777 599999998877 5443
No 38
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=74.61 E-value=4.8 Score=34.31 Aligned_cols=44 Identities=27% Similarity=0.509 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHHHHHHHhh----------cCCCHHHHHhcCChhHHHHHHHH
Q 009210 444 QLPQGFRQRVRNYERQRWAAM----------RGVDECEMISNLPEGLRRDIKYH 487 (540)
Q Consensus 444 ~lp~~L~~rV~~y~~y~~~~~----------~~~~e~~il~~Lp~~Lr~ei~~~ 487 (540)
-+|+++|..|...+.-.-... ...|...++..||+.||.+|+..
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 589999999999997765421 22356789999999999999864
No 39
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=56.96 E-value=9.5 Score=36.98 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=29.0
Q ss_pred HHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 508 ENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 508 ~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
..+....+...|.+|++|+++||.++.+|||.
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~ 63 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVE 63 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEE
Confidence 46677888999999999999999999999985
No 40
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=54.41 E-value=47 Score=31.57 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=45.5
Q ss_pred hcCChhHHHHHHHHHHHHHhhcCccc-ccCCHHHHHHHHHhcceee--ecCCCEEEeCCCcCC
Q 009210 474 SNLPEGLRRDIKYHLCLDLVRQVPLF-QHMDDLVLENICDRVKSLI--FTKGEVVRFKSNILI 533 (540)
Q Consensus 474 ~~Lp~~Lr~ei~~~~~~~~l~~v~lF-~~~~~~fl~~L~~~lk~~~--~~pgd~I~~~Gd~~~ 533 (540)
..+|+. ..++...+...++.-.-+| +..++.-..+.+....|.. +.+||.|+++||..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 456666 5666666666665433344 4678889999999999999 999999999999876
No 41
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=52.92 E-value=69 Score=23.91 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH---HHHHHHHHHHHHHHh
Q 009210 394 VVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQ---AMQLKMRNIEWWMRK 442 (540)
Q Consensus 394 ~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~---~~~~~~~~l~~ym~~ 442 (540)
.++.+++.++-+++++..-+-+-.++.+.+.+++ ..++|+|.+-+.+.+
T Consensus 6 ~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 6 LIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 4455533333333322222345556655444333 588899888777643
No 42
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=49.80 E-value=23 Score=31.19 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhhhcC-ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhC
Q 009210 365 LEKILFPIFWGLMTLST-FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKR 443 (540)
Q Consensus 365 ~~~Yl~slYwai~TmtT-yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~ 443 (540)
......++++.+.+++. -++..|.+. ..|++.+++.+++.++.++.-|++++.+.... ++..++.+++..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~q~~~~~~~s~-s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQQGSSIRPRSW-SGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANSG 115 (148)
T ss_dssp HHHHHHHHHHCCCCCHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTHS
T ss_pred cccHHHHHHHHHHhhccccccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHCC
Confidence 35666788888877765 556788876 99999999999999999999999999987543 223355555555544
No 43
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.75 E-value=3.7e+02 Score=30.99 Aligned_cols=71 Identities=23% Similarity=0.413 Sum_probs=48.9
Q ss_pred ccCccccCch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHH-HHHHHHHHHHHHHHHhCCCChHHHHHH
Q 009210 382 FGNLESTTEW-----LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKK-QAMQLKMRNIEWWMRKRQLPQGFRQRV 453 (540)
Q Consensus 382 yGDi~p~t~~-----~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~-~~~~~~~~~l~~ym~~~~lp~~L~~rV 453 (540)
+||.....+. .=.+|.++++++...+.-.+|+.+++........+ .+++.+-. .--.|-++.+|+.++.|-
T Consensus 605 ~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A-~~iL~lErs~p~~~r~~~ 681 (782)
T KOG3676|consen 605 MGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA-ATILMLERSLPPALRKRF 681 (782)
T ss_pred hhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH-HHHHHHHhcCCHHHHHHH
Confidence 8886655331 33556666666777778888888888888877766 55555543 344667789999998873
No 44
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.65 E-value=1.3e+02 Score=35.38 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=65.1
Q ss_pred cccCCCCcCcccCCCChhHHHHHHHHHHHHHHHHhhcchhhheeeeccccceeeecCcchhhHHHHHHHHHHHHHHHHHH
Q 009210 67 RRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWL 146 (540)
Q Consensus 67 ~r~~~w~~~~vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Di~l 146 (540)
.|..+||.+.|-+| +.+.+.++++++.... +-+|-|-- .-.|.. +-...+.++|-++=++|.+.|++
T Consensus 66 trprswclr~vcnp------wfe~vsmlvillncvt--lgmfrpce--d~~c~s---~rc~ilqafddfifaffavemv~ 132 (1956)
T KOG2302|consen 66 TRPRSWCLRMVCNP------WFECVSMLVILLNCVT--LGMFRPCE--DMDCLS---DRCKILQAFDDFIFAFFAVEMVL 132 (1956)
T ss_pred CCchhHHHHhhccH------HHHHHHHHHHHHhhhh--hcccccch--hcccch---hhhhHHHHHHHHHHHHHHHHHHH
Confidence 56668877777666 2233333334333322 11222211 111221 22345677888888999999999
Q ss_pred hhh-eeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhhhhhccccccccchHHHHHHH
Q 009210 147 QLK-MTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTV 225 (540)
Q Consensus 147 ~F~-t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~l 225 (540)
+.. .|.+ | .|-|+. .+|=-+|+.-++---+-+..- ..+ -+.++.+..++
T Consensus 133 kmvalgif--------g------------------kkcylg-dtwnrldffiv~agm~eysld-lqn--vslsairtvrv 182 (1956)
T KOG2302|consen 133 KMVALGIF--------G------------------KKCYLG-DTWNRLDFFIVMAGMVEYSLD-LQN--VSLSAIRTVRV 182 (1956)
T ss_pred HHHHHhhc--------c------------------cccccc-Cchhhhhhhheehhhhhhccc-ccc--cchhhhhhhhh
Confidence 875 3432 1 134555 477777765443321111000 011 12345566777
Q ss_pred HHHHHHHhHHHHH
Q 009210 226 FLIMFLFQYLPKI 238 (540)
Q Consensus 226 lr~~~l~~rl~Rl 238 (540)
||-++.++|++.+
T Consensus 183 lrplrainrvpsm 195 (1956)
T KOG2302|consen 183 LRPLRAINRVPSM 195 (1956)
T ss_pred hhhhhHhccCchH
Confidence 7777777776654
No 45
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.54 E-value=1.2e+02 Score=34.79 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=35.5
Q ss_pred hcCChhHHHHHHHHHHHHHhh-----cCcccccCCHHHHHHHHHhcc
Q 009210 474 SNLPEGLRRDIKYHLCLDLVR-----QVPLFQHMDDLVLENICDRVK 515 (540)
Q Consensus 474 ~~Lp~~Lr~ei~~~~~~~~l~-----~v~lF~~~~~~fl~~L~~~lk 515 (540)
+.||+.||+.|..+...++.. .-.+++++|++.-++|+.+|-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 579999999999998887766 336789999999999988873
No 46
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=49.07 E-value=37 Score=22.45 Aligned_cols=26 Identities=12% Similarity=0.228 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCC-----hHHHHHHHHHH
Q 009210 432 KMRNIEWWMRKRQLP-----QGFRQRVRNYE 457 (540)
Q Consensus 432 ~~~~l~~ym~~~~lp-----~~L~~rV~~y~ 457 (540)
+..+++++++.+++| .+|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 457899999999999 47999998875
No 47
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=48.88 E-value=39 Score=28.74 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHHHHHHHhh-------cCC-----C-HHHHHhcCChhHHHHHHHHHHHHHhhcCcc------cccCC-
Q 009210 444 QLPQGFRQRVRNYERQRWAAM-------RGV-----D-ECEMISNLPEGLRRDIKYHLCLDLVRQVPL------FQHMD- 503 (540)
Q Consensus 444 ~lp~~L~~rV~~y~~y~~~~~-------~~~-----~-e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~l------F~~~~- 503 (540)
-||.+++.+|..-+...-... ... . ..++|+.||++||.||..+-....-..-.- -...+
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~ 87 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRERRRQERQQNARQHPQEMDN 87 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCH
Confidence 489999999855544322100 000 1 358999999999999998877654443211 22222
Q ss_pred HHHHHHHHHhcceeeec
Q 009210 504 DLVLENICDRVKSLIFT 520 (540)
Q Consensus 504 ~~fl~~L~~~lk~~~~~ 520 (540)
.+|+..|-..|+.++..
T Consensus 88 asflatl~p~LR~evL~ 104 (108)
T PF14377_consen 88 ASFLATLPPELRREVLL 104 (108)
T ss_pred HHHHHhCCHHHHHHHhh
Confidence 46777776666665544
No 48
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=40.71 E-value=26 Score=26.09 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=16.0
Q ss_pred HHHhcCChhHHHHHHHHH
Q 009210 471 EMISNLPEGLRRDIKYHL 488 (540)
Q Consensus 471 ~il~~Lp~~Lr~ei~~~~ 488 (540)
++++.||..|+.|++.++
T Consensus 6 elfqkLPDdLKrEvldY~ 23 (65)
T COG5559 6 ELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHCcHHHHHHHHHHH
Confidence 689999999999998765
No 49
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=38.47 E-value=4.6e+02 Score=29.17 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=37.3
Q ss_pred HhcCChhHHHHHHHHHHHHH-----hhcCcccccCCHHHHHHHHHhcceeeecCC
Q 009210 473 ISNLPEGLRRDIKYHLCLDL-----VRQVPLFQHMDDLVLENICDRVKSLIFTKG 522 (540)
Q Consensus 473 l~~Lp~~Lr~ei~~~~~~~~-----l~~v~lF~~~~~~fl~~L~~~lk~~~~~pg 522 (540)
|.+.|..|-..++-++-..+ |..-..+.-||.+.-.+||.+|...+|...
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEH 553 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEH 553 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccC
Confidence 45678889888888776543 223355678999999999999988888654
No 50
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=38.03 E-value=2.3e+02 Score=23.36 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhcCccCcc-ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHHHHHHhCC
Q 009210 369 LFPIFWGLMTLSTFGNLE-STTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS---KKQAMQLKMRNIEWWMRKRQ 444 (540)
Q Consensus 369 l~slYwai~TmtTyGDi~-p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~---~~~~~~~~~~~l~~ym~~~~ 444 (540)
+.++|.++.+ |.++ |+....|.+.. +=...=+.+-+|..++++-=+...+. ...+-++.+++.++.+++++
T Consensus 14 l~~~w~~l~~----~~~~~~~~~~~~ii~~-lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kG 88 (91)
T PF08285_consen 14 LSALWLALLL----GLLPLPPEPQQEIIPY-LPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKG 88 (91)
T ss_pred HHHHHHHHHH----ccCCCCchhHHHHHHH-hhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455655444 4444 22221333332 22233334446677777766666654 44555677777788999888
Q ss_pred CC
Q 009210 445 LP 446 (540)
Q Consensus 445 lp 446 (540)
+.
T Consensus 89 v~ 90 (91)
T PF08285_consen 89 VD 90 (91)
T ss_pred CC
Confidence 64
No 51
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=37.87 E-value=19 Score=41.33 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEeC
Q 009210 504 DLVLENICDRVKSLIFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 504 ~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
..|++.+=..+.=....||+.+++|||.+|++|+|-|
T Consensus 498 sp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~ 534 (1158)
T KOG2968|consen 498 SPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLN 534 (1158)
T ss_pred CHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEec
Confidence 3566777777888899999999999999999999976
No 52
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=37.18 E-value=68 Score=23.49 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCC-------hHHHHHHHHHHHHHHHhhcCCCHHHHHh
Q 009210 433 MRNIEWWMRKRQLP-------QGFRQRVRNYERQRWAAMRGVDECEMIS 474 (540)
Q Consensus 433 ~~~l~~ym~~~~lp-------~~L~~rV~~y~~y~~~~~~~~~e~~il~ 474 (540)
+..+..|.+..+++ ++|..-|+++|. +..++|.+++.
T Consensus 3 ~~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~-----s~~v~E~evI~ 46 (53)
T PF13867_consen 3 TPTLRRYKKHYKLPERPRSSKEQLANAVRKHFN-----SQPVDENEVIA 46 (53)
T ss_dssp HHHHHHHHHHTT----SS--HHHHHHHHHHHHT-----T----HHHHHH
T ss_pred hHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 46778899988888 578888888885 44578887764
No 53
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=35.35 E-value=55 Score=24.46 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHh
Q 009210 439 WMRKRQLPQGFRQRVRNYERQRWAA 463 (540)
Q Consensus 439 ym~~~~lp~~L~~rV~~y~~y~~~~ 463 (540)
|--..++|++|++.|..|.+|..+.
T Consensus 5 yelfqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 5 YELFQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHHH
Confidence 3345689999999999999999875
No 54
>PF07146 DUF1389: Protein of unknown function (DUF1389); InterPro: IPR010792 This family consists of several hypothetical bacterial proteins, which seem to be specific to Chlamydia pneumoniae (Chlamydophila pneumoniae). Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=30.76 E-value=3e+02 Score=28.23 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=51.0
Q ss_pred HhCCCChHHHHHHHHHH-----HHHHHhhcCCC-------------HHHHHhcCChhHHHHHHHHHHHHH---hhcCcc-
Q 009210 441 RKRQLPQGFRQRVRNYE-----RQRWAAMRGVD-------------ECEMISNLPEGLRRDIKYHLCLDL---VRQVPL- 498 (540)
Q Consensus 441 ~~~~lp~~L~~rV~~y~-----~y~~~~~~~~~-------------e~~il~~Lp~~Lr~ei~~~~~~~~---l~~v~l- 498 (540)
+.++||..++..|++.| ++.-+++-.+. ...-+..+|++||..+...=..++ ++.+.+
T Consensus 35 k~~~IP~gf~~vIk~~YP~~i~~~v~~q~LtiqE~r~li~~L~~~~~s~~l~~l~~~L~~kl~~FGi~~l~~~~~~~~Lp 114 (314)
T PF07146_consen 35 KNKNIPQGFRSVIKENYPKVIYDFVVKQDLTIQEFRLLIDGLRNISSSGSLESLPPKLKEKLEDFGIERLQSDCEGIDLP 114 (314)
T ss_pred cCCCCcHHHHHHHHHHCcHHHHHHHHHccCcHHHHHHHHHHHhhhccccccccCCHHHHHHHHHcChHHHHHhhcccCCC
Confidence 46789999999988875 33333222222 223456779999999987544444 444432
Q ss_pred ------cccCCHHHHHHHHHhcceeee
Q 009210 499 ------FQHMDDLVLENICDRVKSLIF 519 (540)
Q Consensus 499 ------F~~~~~~fl~~L~~~lk~~~~ 519 (540)
.++||==++...+....+...
T Consensus 115 ~Ld~iLlknCPlYwL~kFI~lg~~~~~ 141 (314)
T PF07146_consen 115 DLDDILLKNCPLYWLKKFIDLGSREVP 141 (314)
T ss_pred CHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 368888888888766666555
No 55
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.35 E-value=6.7e+02 Score=29.16 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhcCccC
Q 009210 368 ILFPIFWGLMTLSTFGN 384 (540)
Q Consensus 368 Yl~slYwai~TmtTyGD 384 (540)
=..+++||+-+++-.++
T Consensus 554 S~~tLFWsiFglv~~~~ 570 (822)
T KOG3609|consen 554 SSKTLFWSIFGLVVLGS 570 (822)
T ss_pred HHHHHHHHHHhcccccc
Confidence 34589999987765444
No 56
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=29.35 E-value=5.8e+02 Score=27.07 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=14.5
Q ss_pred HHHHHhhccccchHhHHhhhc
Q 009210 179 SVALRYMKAKKGFFFDLFVIL 199 (540)
Q Consensus 179 ~Ia~~Yl~sk~~F~iDlls~l 199 (540)
+..++|+++ .|-++|++.++
T Consensus 234 ~~g~~y~~~-~WN~~e~~ii~ 253 (425)
T PF08016_consen 234 REGRAYFKS-FWNWLELLIIL 253 (425)
T ss_pred HhhhHHhhh-cCcHHHHHHHH
Confidence 344788874 88889987654
No 57
>PRK06771 hypothetical protein; Provisional
Probab=28.12 E-value=2.5e+02 Score=23.23 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 009210 408 VTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRN 455 (540)
Q Consensus 408 ~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~ 455 (540)
+-|+...+..+....+.+....+.+++.+.+.+---...+++..++++
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 445666777777777776677777776666665443332233444443
No 58
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=27.65 E-value=2.8e+02 Score=22.69 Aligned_cols=82 Identities=6% Similarity=-0.034 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHhhcCCC--HHHHHhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHH
Q 009210 431 LKMRNIEWWMRK-RQLPQGFRQRVRNYERQRWAAMRGVD--ECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVL 507 (540)
Q Consensus 431 ~~~~~l~~ym~~-~~lp~~L~~rV~~y~~y~~~~~~~~~--e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl 507 (540)
+....+.++|.. .+++++-+.++++.++..-....... -+.+-..++++.|..+...+.+-.... .-+......++
T Consensus 19 ~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~AD-G~~~~~E~~~l 97 (104)
T cd07313 19 EERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYAD-GELDEYEEHLI 97 (104)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-CCCCHHHHHHH
Confidence 556778888888 49999999999999987655332222 234555667888888776665544322 11222334566
Q ss_pred HHHHHh
Q 009210 508 ENICDR 513 (540)
Q Consensus 508 ~~L~~~ 513 (540)
+.++..
T Consensus 98 ~~ia~~ 103 (104)
T cd07313 98 RRVADL 103 (104)
T ss_pred HHHHhh
Confidence 665543
No 59
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=25.38 E-value=99 Score=24.54 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=30.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceee
Q 009210 470 CEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLI 518 (540)
Q Consensus 470 ~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~ 518 (540)
.++|..||+++|.+|+..+ --++..++..+..+-..|+..+
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~l 70 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEKL 70 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999887654 3356778888888888776554
No 60
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=25.24 E-value=3.5e+02 Score=22.24 Aligned_cols=75 Identities=9% Similarity=0.055 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhcCCCHHHHHhcCCh-hHHHHHHHHHHHHHhhcCcccccCCHHHHHH
Q 009210 431 LKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPE-GLRRDIKYHLCLDLVRQVPLFQHMDDLVLEN 509 (540)
Q Consensus 431 ~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~-~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~ 509 (540)
+....+.+.+...+++.+.+..+..-+ .+..+.+++...++. .++.++ |.-.+--+..+......+|.+
T Consensus 19 ~E~~~I~~~~~~~~~~~~~~~~~~~~l------~~p~~~~~la~~~~~~~~a~~~----y~~s~~~~d~~s~aE~~~L~~ 88 (95)
T cd07178 19 AERARILGELGEAGLDAEERAFLEAEL------AAPLDPDALAAAVPDPELAAEV----YAASLLAIDPDTFAERAYLDE 88 (95)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH------HCCCCHHHHHHHcCCHHHHHHH----HHHHHHHHcCCCHHHHHHHHH
Confidence 445678889999999876666555544 257788899999987 555555 333333345566667889999
Q ss_pred HHHhcc
Q 009210 510 ICDRVK 515 (540)
Q Consensus 510 L~~~lk 515 (540)
|+..|.
T Consensus 89 la~aLg 94 (95)
T cd07178 89 LAAALG 94 (95)
T ss_pred HHHHhC
Confidence 998774
No 61
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=24.25 E-value=1.9e+02 Score=26.13 Aligned_cols=25 Identities=8% Similarity=-0.004 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 009210 263 IVLNMIAYFVASHAAGACWYLLGIQ 287 (540)
Q Consensus 263 ~~~~l~~~~l~~H~~aCiw~~i~~~ 287 (540)
.+..++.+++..+..+|..+.-...
T Consensus 100 ~~~~~~~~~~~~a~~~~~lf~~~~~ 124 (200)
T PF00520_consen 100 FILLLFIVLLFFACIGYQLFGGSDN 124 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred cccccccccccccchhheecccccc
Confidence 4566667777777777777776543
No 62
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=24.14 E-value=1e+02 Score=20.18 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCCCh-----HHHHHHHHHH
Q 009210 433 MRNIEWWMRKRQLPQ-----GFRQRVRNYE 457 (540)
Q Consensus 433 ~~~l~~ym~~~~lp~-----~L~~rV~~y~ 457 (540)
..++++.++..++|. +|+.|+.+|+
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 457889999999984 6888887763
No 63
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=22.46 E-value=75 Score=24.38 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.3
Q ss_pred hCCCChHHHHHHHHHHHHHHHhh
Q 009210 442 KRQLPQGFRQRVRNYERQRWAAM 464 (540)
Q Consensus 442 ~~~lp~~L~~rV~~y~~y~~~~~ 464 (540)
-+++|++++..|.+|.+|...+.
T Consensus 9 i~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 9 IQQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhc
Confidence 46799999999999999998754
No 64
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=21.97 E-value=3.5e+02 Score=28.34 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHhhhcCccC-c---cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Q 009210 364 RLEKILFPIFWGLMTLSTFGN-L---ESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWW 439 (540)
Q Consensus 364 ~~~~Yl~slYwai~TmtTyGD-i---~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~y 439 (540)
..--|+.+|-+++..+.+.++ . .|. .. ..+++++.+++.+.+-+.|..++..++--+.-+.-.++-.+.+.+.
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~--~~-~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~~~ 173 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPR--LS-VFIALALAILSVVLLIYFIHHIARSIQVSNIIARIEEDARKAIDRL 173 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcc--hH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 346688888888888776332 1 233 24 7888888888888999999988888766665555555554555444
Q ss_pred HH
Q 009210 440 MR 441 (540)
Q Consensus 440 m~ 441 (540)
..
T Consensus 174 ~~ 175 (371)
T PF10011_consen 174 YP 175 (371)
T ss_pred hc
Confidence 43
No 65
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=21.86 E-value=1.7e+02 Score=26.31 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc-------------hHHHHHHHHHHHHHHHHHh
Q 009210 398 IIVLTSGLLLVTMLIGNIKVFLHATT-------------SKKQAMQLKMRNIEWWMRK 442 (540)
Q Consensus 398 i~~mi~G~~~~a~iig~i~~il~~~~-------------~~~~~~~~~~~~l~~ym~~ 442 (540)
+++.++|..++|++++-+.+.-...+ ....+|+++++...+.++.
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 67889999999999976644322211 2345688888888866653
No 66
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.76 E-value=1.2e+02 Score=20.33 Aligned_cols=15 Identities=13% Similarity=0.654 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCCChH
Q 009210 434 RNIEWWMRKRQLPQG 448 (540)
Q Consensus 434 ~~l~~ym~~~~lp~~ 448 (540)
+++++||..++||.+
T Consensus 7 ~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHcCCCCC
Confidence 578999999998853
No 67
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=21.72 E-value=2.6e+02 Score=27.85 Aligned_cols=17 Identities=18% Similarity=-0.064 Sum_probs=9.9
Q ss_pred HHHHHHHhhheeecccC
Q 009210 6 QEISRAARVQYYTTTDD 22 (540)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (540)
+...+.+|..++.-.|.
T Consensus 22 ~~~~~~~~D~arg~~ds 38 (360)
T KOG3966|consen 22 VKFQIIARDFARGFIDS 38 (360)
T ss_pred HHHHHHHHHHhhcCCcc
Confidence 34566677766655543
No 68
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.61 E-value=1.1e+03 Score=25.84 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=50.5
Q ss_pred HHHHHH--HHHHHHHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHH
Q 009210 409 TMLIGN--IKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKY 486 (540)
Q Consensus 409 a~iig~--i~~il~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~ei~~ 486 (540)
-+++|. +|.|+.+..+--.+.++....-++-| +-++.|.+|+ ..|..|+..++.
T Consensus 216 d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~m----------DGiK~YM~~R--------------kV~~~lq~rVik 271 (536)
T KOG0500|consen 216 DTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKM----------DGIKQYMRYR--------------KVPKALQTRVIK 271 (536)
T ss_pred HHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHH----------HHHHHHHHHh--------------cccHHHHHHHHH
Confidence 344443 36666666554444444444443333 3466666654 788899998875
Q ss_pred HH-----HHHHhhcCcccccCCHHHHHHHHHhcce
Q 009210 487 HL-----CLDLVRQVPLFQHMDDLVLENICDRVKS 516 (540)
Q Consensus 487 ~~-----~~~~l~~v~lF~~~~~~fl~~L~~~lk~ 516 (540)
.- +++....-...+.+|+.+-.+|+..+..
T Consensus 272 wfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~ 306 (536)
T KOG0500|consen 272 WFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHL 306 (536)
T ss_pred HHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHH
Confidence 43 3444444456677888888888877653
No 69
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=21.42 E-value=1.8e+02 Score=21.06 Aligned_cols=32 Identities=3% Similarity=0.031 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 009210 431 LKMRNIEWWMRKRQLPQGFRQRVRNYERQRWA 462 (540)
Q Consensus 431 ~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~ 462 (540)
.-.+.+.+......|+++|..+|..-|+-.-.
T Consensus 14 aL~dtLDeli~~~~I~p~La~kVL~~FDksi~ 45 (49)
T PF02268_consen 14 ALTDTLDELIQEGKITPQLAMKVLEQFDKSIN 45 (49)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999875543
Done!