Query 009210
Match_columns 540
No_of_seqs 233 out of 1779
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 21:19:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 99.9 1.9E-23 6.5E-28 216.2 13.7 117 365-540 159-277 (355)
2 3ukn_A Novel protein similar t 99.9 1.6E-22 5.4E-27 193.5 8.5 123 416-539 1-123 (212)
3 1orq_C Potassium channel; volt 99.9 1.6E-21 5.3E-26 188.6 14.4 210 86-421 8-220 (223)
4 2ptm_A Hyperpolarization-activ 99.9 3.4E-21 1.2E-25 182.2 14.6 119 420-539 1-119 (198)
5 3bpz_A Potassium/sodium hyperp 99.9 5.2E-21 1.8E-25 181.6 14.3 119 420-539 2-120 (202)
6 2r9r_B Paddle chimera voltage 99.8 1.2E-19 4.1E-24 195.7 11.0 309 77-501 172-501 (514)
7 2a9h_A Voltage-gated potassium 99.5 4.2E-14 1.4E-18 127.9 10.9 64 366-430 83-148 (155)
8 3vou_A ION transport 2 domain 99.4 2.2E-12 7.6E-17 116.1 15.0 84 368-452 53-148 (148)
9 4h33_A LMO2059 protein; bilaye 99.4 3.3E-13 1.1E-17 119.8 7.8 91 367-458 43-135 (137)
10 2ih3_C Voltage-gated potassium 99.3 4.1E-12 1.4E-16 110.4 10.5 58 366-424 60-119 (122)
11 3eff_K Voltage-gated potassium 99.2 3.2E-11 1.1E-15 107.3 10.8 58 366-424 39-98 (139)
12 2q67_A Potassium channel prote 99.0 2E-09 6.9E-14 92.1 11.6 60 367-427 49-110 (114)
13 3rvy_A ION transport protein; 99.0 3E-09 1E-13 106.1 13.7 60 365-424 178-244 (285)
14 2k1e_A Water soluble analogue 99.0 1.7E-10 5.8E-15 97.0 3.5 58 366-424 39-98 (103)
15 3ouf_A Potassium channel prote 98.9 1.5E-08 5.2E-13 84.0 10.5 54 368-422 33-88 (97)
16 3ldc_A Calcium-gated potassium 98.8 1.9E-08 6.4E-13 80.7 10.3 52 367-419 28-81 (82)
17 4f8a_A Potassium voltage-gated 98.8 4.5E-09 1.5E-13 94.4 6.9 71 469-539 5-75 (160)
18 3pjs_K KCSA, voltage-gated pot 98.7 1.2E-09 3.9E-14 100.2 -1.8 63 366-429 66-130 (166)
19 1xl4_A Inward rectifier potass 98.5 1.7E-07 5.7E-12 93.7 8.6 56 366-422 81-138 (301)
20 1p7b_A Integral membrane chann 98.4 1.4E-07 4.9E-12 95.3 5.8 58 366-424 95-154 (333)
21 3um7_A Potassium channel subfa 98.4 5.6E-07 1.9E-11 89.7 9.8 75 367-448 115-191 (309)
22 2qks_A KIR3.1-prokaryotic KIR 98.3 2.5E-06 8.5E-11 85.9 10.8 57 367-424 78-136 (321)
23 3ocp_A PRKG1 protein; serine/t 98.3 8.5E-07 2.9E-11 77.6 5.5 65 475-539 7-71 (139)
24 4gx0_A TRKA domain protein; me 98.2 3.7E-06 1.3E-10 91.7 10.2 52 367-419 51-105 (565)
25 3um7_A Potassium channel subfa 98.0 2.7E-06 9.2E-11 84.8 4.3 59 367-426 224-290 (309)
26 3sya_A G protein-activated inw 98.0 2.3E-05 7.9E-10 79.1 10.6 58 367-424 91-151 (340)
27 3ukm_A Potassium channel subfa 98.0 1E-05 3.4E-10 79.5 7.6 54 367-421 93-148 (280)
28 3shr_A CGMP-dependent protein 97.9 9.7E-06 3.3E-10 80.5 5.6 69 471-539 19-87 (299)
29 3ukm_A Potassium channel subfa 97.9 9E-06 3.1E-10 79.8 5.2 55 368-422 202-264 (280)
30 4dxw_A Navrh, ION transport pr 97.8 0.00019 6.5E-09 68.6 13.6 47 127-201 42-88 (229)
31 2d93_A RAP guanine nucleotide 97.8 7.8E-06 2.7E-10 70.9 3.0 64 477-540 2-66 (134)
32 1lnq_A MTHK channels, potassiu 97.7 2.4E-06 8.3E-11 86.9 -1.9 56 368-424 46-103 (336)
33 3spc_A Inward-rectifier K+ cha 97.7 0.00013 4.4E-09 73.7 10.5 59 366-424 93-154 (343)
34 3idb_B CAMP-dependent protein 97.6 4.5E-05 1.5E-09 68.2 5.4 60 480-539 27-86 (161)
35 1vp6_A CNBD, cyclic-nucleotide 97.6 9.5E-05 3.2E-09 64.0 7.1 51 489-539 9-59 (138)
36 3pna_A CAMP-dependent protein 97.5 9.4E-05 3.2E-09 65.7 6.0 53 487-539 34-86 (154)
37 1wgp_A Probable cyclic nucleot 97.5 5.4E-05 1.8E-09 65.5 4.3 49 491-539 6-54 (137)
38 3mdp_A Cyclic nucleotide-bindi 97.5 7E-05 2.4E-09 65.0 5.0 50 490-539 5-54 (142)
39 2kyh_A KVAP, voltage-gated pot 97.5 0.00023 7.9E-09 63.2 8.0 48 127-204 52-99 (147)
40 2pqq_A Putative transcriptiona 97.5 0.00011 3.7E-09 64.3 5.1 51 490-540 4-54 (149)
41 3gyd_A CNMP-BD protein, cyclic 97.4 7.6E-05 2.6E-09 68.8 4.2 71 469-539 13-87 (187)
42 2z69_A DNR protein; beta barre 97.4 0.00024 8.3E-09 62.4 6.2 50 490-539 11-60 (154)
43 1ors_C Potassium channel; volt 97.3 0.00058 2E-08 59.5 8.2 47 127-203 37-83 (132)
44 1o7f_A CAMP-dependent RAP1 gua 97.1 0.00062 2.1E-08 71.9 6.6 64 476-539 27-90 (469)
45 4ava_A Lysine acetyltransferas 97.0 0.00062 2.1E-08 68.4 6.3 51 489-539 11-61 (333)
46 2qcs_B CAMP-dependent protein 97.0 0.00061 2.1E-08 66.9 6.0 57 483-539 31-87 (291)
47 3fx3_A Cyclic nucleotide-bindi 97.0 0.00061 2.1E-08 64.7 5.1 53 487-539 7-59 (237)
48 3of1_A CAMP-dependent protein 96.9 0.0011 3.9E-08 63.0 6.6 52 488-539 122-173 (246)
49 3tnp_B CAMP-dependent protein 96.9 0.00082 2.8E-08 70.2 5.5 59 481-539 135-193 (416)
50 1zyb_A Transcription regulator 96.7 0.0015 5.2E-08 62.0 5.8 52 488-539 15-68 (232)
51 4din_B CAMP-dependent protein 96.7 0.00095 3.2E-08 68.9 4.5 60 481-540 120-179 (381)
52 4f7z_A RAP guanine nucleotide 96.7 0.0014 4.9E-08 76.1 6.1 67 472-539 24-90 (999)
53 2qcs_B CAMP-dependent protein 96.6 0.0035 1.2E-07 61.4 7.5 53 487-539 153-205 (291)
54 3shr_A CGMP-dependent protein 96.5 0.0021 7.2E-08 63.4 5.3 53 487-539 153-205 (299)
55 3iwz_A CAP-like, catabolite ac 96.5 0.0021 7.3E-08 60.4 4.9 50 490-539 10-59 (230)
56 1o7f_A CAMP-dependent RAP1 gua 96.5 0.0029 9.8E-08 66.8 6.1 55 486-540 332-387 (469)
57 3cf6_E RAP guanine nucleotide 96.2 0.0047 1.6E-07 68.7 6.4 70 470-540 12-82 (694)
58 4din_B CAMP-dependent protein 95.9 0.0045 1.5E-07 63.7 3.8 53 487-539 244-296 (381)
59 3tnp_B CAMP-dependent protein 95.7 0.0058 2E-07 63.7 4.0 52 488-539 264-315 (416)
60 4f7z_A RAP guanine nucleotide 94.3 0.042 1.4E-06 63.8 6.1 54 487-540 333-387 (999)
61 3kcc_A Catabolite gene activat 92.3 0.088 3E-06 50.6 4.0 40 500-539 55-94 (260)
62 3la7_A Global nitrogen regulat 84.1 0.8 2.7E-05 43.1 4.3 36 504-539 30-68 (243)
63 3kg2_A Glutamate receptor 2; I 36.5 36 0.0012 37.6 5.7 54 367-421 563-617 (823)
64 2lh0_A Histone chaperone RTT10 28.1 35 0.0012 25.5 2.4 14 472-485 8-21 (70)
65 2rnn_A E3 SUMO-protein ligase 20.7 78 0.0027 26.1 3.4 30 431-460 40-74 (114)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.89 E-value=1.9e-23 Score=216.20 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHh
Q 009210 365 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 442 (540)
Q Consensus 365 ~~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~ 442 (540)
...|..|+||+++|||| |||+.|.|. .++++++++|++|.+++++.+|.+++.+.+... +
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~-~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~------~----------- 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSF-AGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR------R----------- 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------
Confidence 35688999999999999 999999987 999999999999999999999999877653211 0
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCC
Q 009210 443 RQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKG 522 (540)
Q Consensus 443 ~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pg 522 (540)
+++. -+.+.++++|+|++++++.+++++..+++..|.||
T Consensus 221 -----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~g 259 (355)
T 3beh_A 221 -----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAG 259 (355)
T ss_dssp -----------HHHH------------------------------HHHC-------------------------------
T ss_pred -----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCC
Confidence 0010 03478999999999999999999999999999999
Q ss_pred CEEEeCCCcCCeEEEEeC
Q 009210 523 EVVRFKSNILINITTVTN 540 (540)
Q Consensus 523 d~I~~~Gd~~~~mYfI~n 540 (540)
|+|+++||.++++|||.+
T Consensus 260 e~I~~~G~~~~~ly~I~~ 277 (355)
T 3beh_A 260 AVICRIGEPGDRMFFVVE 277 (355)
T ss_dssp ------------------
T ss_pred CEEEeCCCcCceEEEEEe
Confidence 999999999999999863
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.87 E-value=1.6e-22 Score=193.49 Aligned_cols=123 Identities=24% Similarity=0.433 Sum_probs=109.9
Q ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhhc
Q 009210 416 KVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQ 495 (540)
Q Consensus 416 ~~il~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~ 495 (540)
|+|++++++++.+|+++|+.+++||+.+++|++||.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578999999999999999999999999999999999999999999998899999999999999999999999999888 8
Q ss_pred CcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 496 VPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 496 v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
+|+|++++++++..|+..+++..|.|||+|+++||.++.||||.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~ 123 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVC 123 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEE
Confidence 99999999999999999999999999999999999999999996
No 3
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.86 E-value=1.6e-21 Score=188.64 Aligned_cols=210 Identities=12% Similarity=0.189 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHhhcchhhheeeeccccceeeecCcchhhHHHHHHHHHHHHHHHHHHhhheeEeecCcccCCcccc
Q 009210 86 QEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAAD 165 (540)
Q Consensus 86 ~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Di~l~F~t~y~~~~~~~~~G~lV 165 (540)
..||.++++++++++++.++..+.. . +.+....+.++|.+++++|.+|++++|.++.
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~~~~-~---------~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~------------- 64 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVECTMQ-L---------SGEYLVRLYLVDLILVIILWADYAYRAYKSG------------- 64 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHH-H---------TTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcc-c---------ChhhhhHHHHHHHHHHHHHHHHHHHHHcccc-------------
Confidence 3588888877777766655432111 1 1122356788999999999999999998762
Q ss_pred cCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhhhhhccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009210 166 DEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLL 245 (540)
Q Consensus 166 ~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~llr~~~l~~rl~Rl~Rv~~l~ 245 (540)
+ .++|+ |+ +++|++|++|++..... .. +. ......+.+|+ +|++|+.|+.
T Consensus 65 --~------------~~~y~--~~-~iiDllailP~~~~~~~---~~--~~-~~~~~lr~lRl-------lRllR~~r~~ 114 (223)
T 1orq_C 65 --D------------PAGYV--KK-TLYEIPALVPAGLLALI---EG--HL-AGLGLFRLVRL-------LRFLRILLII 114 (223)
T ss_dssp --C------------HHHHH--HH-HHHHCTTHHHHHHHHHH---HH--HH-HTTTCHHHHHH-------HHHHHHHHHH
T ss_pred --c------------HHHHH--HH-hHHHHHHHHHHHHHHHH---hc--ch-hHHHHHHHHHH-------HHHHHHHHHH
Confidence 1 26999 55 99999999999765420 00 00 00112223322 2333333333
Q ss_pred HHhhhccccchhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhccCCCcccccccCCCcccCccccccc
Q 009210 246 RRMQNLSGYIFGTV-WWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRD 324 (540)
Q Consensus 246 ~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~H~~aCiw~~i~~~~~~~~~~~~c~~~~~c~~~~l~~~~~~~y~~~~~~~~ 324 (540)
+...+....+.... -.++...++..+++.|+.||++|++...
T Consensus 115 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~------------------------------------- 157 (223)
T 1orq_C 115 SRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYP------------------------------------- 157 (223)
T ss_dssp HSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------------------------------
Confidence 32111100000000 0123333444556789999999875210
Q ss_pred ccccccccccccccccccCCCCCcccchhhhhhhccCchhhhHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHH
Q 009210 325 RARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLT 402 (540)
Q Consensus 325 ~~~~sW~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~s~~~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi 402 (540)
.+ .+....|..|+||+++|||| |||+.|.|. .|++++++.|+
T Consensus 158 -~~----------------------------------~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~-~~~~~~~~~~~ 201 (223)
T 1orq_C 158 -DP----------------------------------NSSIKSVFDALWWAVVTATTVGYGDVVPATP-IGKVIGIAVML 201 (223)
T ss_dssp -ST----------------------------------TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHH
T ss_pred -Cc----------------------------------CCCcCcchhHHHhHHhHHhccCCCCCCCCCH-hHHHHHHHHHH
Confidence 00 01125689999999999999 999999987 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009210 403 SGLLLVTMLIGNIKVFLHA 421 (540)
Q Consensus 403 ~G~~~~a~iig~i~~il~~ 421 (540)
+|.+++|+.+|.+++.+++
T Consensus 202 ~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 202 TGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998865
No 4
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.86 E-value=3.4e-21 Score=182.19 Aligned_cols=119 Identities=22% Similarity=0.373 Sum_probs=113.6
Q ss_pred HHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhhcCccc
Q 009210 420 HATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLF 499 (540)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF 499 (540)
+++++++.+|+++|+.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcch
Confidence 4678999999999999999999999999999999999999998 578899999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 500 QHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 500 ~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
+++++.++..|+..+++..|.|||+|+++||.++.||||.
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~ 119 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQ 119 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEE
T ss_pred hcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEE
Confidence 9999999999999999999999999999999999999996
No 5
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.85 E-value=5.2e-21 Score=181.63 Aligned_cols=119 Identities=25% Similarity=0.423 Sum_probs=113.6
Q ss_pred HHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhhcCccc
Q 009210 420 HATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLF 499 (540)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF 499 (540)
+++++++.+|+++|+.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||++||.+|..++++++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4688999999999999999999999999999999999999998 578999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 500 QHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 500 ~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
+++++.++..|+..+++..|.|||+|+++||.++.||||.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~ 120 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQ 120 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEe
Confidence 9999999999999999999999999999999999999996
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.79 E-value=1.2e-19 Score=195.75 Aligned_cols=309 Identities=10% Similarity=0.071 Sum_probs=142.3
Q ss_pred ccCCC-ChhHHHHHHHHHHHHHHHHhhcchhhheeeeccccce-----------------eeecCcchhhHHHHHHHHHH
Q 009210 77 VLDPR-AKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMC-----------------LFVDGWFAITVTALRCMTDL 138 (540)
Q Consensus 77 vi~P~-s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~d~ 138 (540)
+-+|. |...++++.++++++++.+++..+.- .|.+...... ..........+.++|.++.+
T Consensus 172 ~e~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~ 250 (514)
T 2r9r_B 172 FEYPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCII 250 (514)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccccccchhhhHHHHHHHHHHH
Confidence 34686 56888999888877777665543331 1111110000 00001123457889999999
Q ss_pred HHHHHHHHhhheeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhhhhhhccccccccch
Q 009210 139 LHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGS 218 (540)
Q Consensus 139 ~F~~Di~l~F~t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~ 218 (540)
+|.+|++++|.++- + + ++|++| .|.++|+++++|+.+.+.. +.....+.
T Consensus 251 iFtiE~ilR~~~~~---------------~--------k----~~Y~ks-~wniiDli~iip~~i~l~~---~~~~~~~~ 299 (514)
T 2r9r_B 251 WFSFEFLVRFFACP---------------S--------K----AGFFTN-IMNIIDIVAIIPYYVTIFL---TESNKSVL 299 (514)
T ss_dssp HHHHHHHHHHHHSS---------------C--------S----SSSTTS-HHHHHHHHTTHHHHHHHHH---HHTSCSHH
T ss_pred HHHHHHHHHHHhCC---------------c--------H----HHHHhc-hhHHHHHHHHHHHHHHHHh---hhccccch
Confidence 99999999998641 1 1 478863 6999999999999654321 11000011
Q ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhh
Q 009210 219 -ITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQC 297 (540)
Q Consensus 219 -~~~~~~llr~~~l~~rl~Rl~Rv~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aCiw~~i~~~~~~~~~~~~c 297 (540)
.......+|++|++ |++|++|+.+..+.++.....+.. .+..+..+++++++.++++||++|++.. .
T Consensus 300 ~~~~~~~~lrvlRll-RvlRilkL~r~~~~l~~l~~tl~~-s~~~l~~ll~~l~i~~~if~~~~~~~e~---~------- 367 (514)
T 2r9r_B 300 QFQNVRRVVQIFRIM-RILRIFKLSRHSKGLQILGQTLKA-SMRELGLLIFFLFIGVILFSSAVYFAEA---D------- 367 (514)
T ss_dssp HHHTTHHHHHHHHHH-GGGGGGGGGGSCHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHT---T-------
T ss_pred hhhhHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhheeec---c-------
Confidence 01112233333322 222333333322222222111111 1112222333334556777887775410 0
Q ss_pred hccCCCcccccccCCCcccCcccccccccccccccccccccccccCCCCCcccchhhhhhhccCchhhhHHHHHHHHHHh
Q 009210 298 REMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLM 377 (540)
Q Consensus 298 ~~~~~c~~~~l~~~~~~~y~~~~~~~~~~~~sW~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~s~~~~Yl~slYwai~ 377 (540)
.+ .+.+..|..|+||++.
T Consensus 368 ----------------------------~~----------------------------------~~~F~s~~~a~y~~~v 385 (514)
T 2r9r_B 368 ----------------------------ER----------------------------------DSQFPSIPDAFWWAVV 385 (514)
T ss_dssp ----------------------------CT----------------------------------TCSCSSHHHHHHHHHH
T ss_pred ----------------------------CC----------------------------------Cccccchhhhhheeee
Confidence 00 1112457889999999
Q ss_pred hhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 009210 378 TLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRN 455 (540)
Q Consensus 378 TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~~lp~~L~~rV~~ 455 (540)
|||| |||+.|.+. .++++++++|++|.+++++.+|.+.+.++....++. .++..+..++++.-...|.....+
T Consensus 386 T~TTvGYGDi~P~t~-~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~-~~~~~~l~~h~iicg~~~~~~~l~--- 460 (514)
T 2r9r_B 386 SMTTVGYGDMVPTTI-GGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET-EGEEQAQYLQVTSSPKIPSSPDLK--- 460 (514)
T ss_dssp HHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC----------------------------
T ss_pred EEEecccCCCCCCCc-chHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCEEEeCCCccchhHH---
Confidence 9999 999999986 999999999999999999999999987777655332 222222334444444444332211
Q ss_pred HHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhhcCccccc
Q 009210 456 YERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQH 501 (540)
Q Consensus 456 y~~y~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~ 501 (540)
-++.+...++.-..+|.+.++.++..+-........+...+
T Consensus 461 -----~~~~~~~~~~s~~~el~e~~~~~~~~~~~~~~~~~~~~~~~ 501 (514)
T 2r9r_B 461 -----KSRSASTISKSDYMEIQEGVNNSNEDFREENLKTANSTLAN 501 (514)
T ss_dssp ----------------------------------------------
T ss_pred -----hcccCCCcccccccccccccccccccccccccccCCccccc
Confidence 01122333455567888888888876665554444444433
No 7
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.52 E-value=4.2e-14 Score=127.92 Aligned_cols=64 Identities=13% Similarity=0.312 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHH
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQ 430 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~ 430 (540)
..|..|+|||++|+|| |||+.|.|. .+++++++.+++|.+++|+++|.+++.+.+...++.+..
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~-~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~~ 148 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTL-WGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHF 148 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------
T ss_pred CcccceeheeeeeeecccCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999 999999987 999999999999999999999999999998876554433
No 8
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.43 E-value=2.2e-12 Score=116.08 Aligned_cols=84 Identities=25% Similarity=0.346 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----cchHHHHHHHHHHH
Q 009210 368 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKV------FLHA----TTSKKQAMQLKMRN 435 (540)
Q Consensus 368 Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~------il~~----~~~~~~~~~~~~~~ 435 (540)
|..|+||+++|+|| |||+.|.|. .+++++++.+++|.+++++++|.+++ +... .+....+..+++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~-~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTD-FGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999 999999987 99999999999999999999999987 3333 24445566778999
Q ss_pred HHHHHHhCCCChHHHHH
Q 009210 436 IEWWMRKRQLPQGFRQR 452 (540)
Q Consensus 436 l~~ym~~~~lp~~L~~r 452 (540)
+++++++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999876
No 9
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.40 E-value=3.3e-13 Score=119.76 Aligned_cols=91 Identities=14% Similarity=0.299 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhCC
Q 009210 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQ 444 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~~ 444 (540)
.|..|+|||++|+|| |||++|.|. .++++++++|++|++++|+++|.+++.+.+....+.+.++.....+...+..+
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTP-IGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPD 121 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC-------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 378899999999999 999999987 99999999999999999999999999987766555444444333444445566
Q ss_pred CChHHHHHHHHHHH
Q 009210 445 LPQGFRQRVRNYER 458 (540)
Q Consensus 445 lp~~L~~rV~~y~~ 458 (540)
++++.+..+++|.+
T Consensus 122 l~~~~i~~l~~~l~ 135 (137)
T 4h33_A 122 LTKEEIAVVEQFLT 135 (137)
T ss_dssp --------------
T ss_pred ccHHHHHHHHHHHh
Confidence 77777777777654
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.34 E-value=4.1e-12 Score=110.37 Aligned_cols=58 Identities=14% Similarity=0.328 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
..|..|+||++.|+|| |||+.|.|+ .+++++++.+++|..++|+.+|.+++.+.+..+
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999 999999987 999999999999999999999999999987654
No 11
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.24 E-value=3.2e-11 Score=107.33 Aligned_cols=58 Identities=14% Similarity=0.347 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
..|..|+||+++|+|| |||+.|.|. .+++++++.+++|.++++++++.+++.+.+...
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~-~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSS-HHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999 999999987 999999999999999999999999988755443
No 12
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.02 E-value=2e-09 Score=92.07 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Q 009210 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQ 427 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~ 427 (540)
.|..|+||+++|+|| |||+.|.|. .+++++++.+++|..++++.++.+++.+...+...+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~-~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTD-FGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999 999999987 999999999999999999999999999866554443
No 13
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.00 E-value=3e-09 Score=106.10 Aligned_cols=60 Identities=5% Similarity=0.086 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhhhcC--cc-Ccc-ccCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 365 LEKILFPIFWGLMTLST--FG-NLE-STTEW---LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 365 ~~~Yl~slYwai~TmtT--yG-Di~-p~t~~---~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
...+..|+||++.|+|| || |+. |.+.. .-..+.+++++.|.++.+..+|.+.+-+.....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577899999999999 99 975 66541 127888999999999999999998887765544
No 14
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.99 E-value=1.7e-10 Score=97.05 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
..|..|+||++.|+|| |||+.|.+. .+++++++.+++|..++++++|.+++.+.+...
T Consensus 39 ~~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 39 ISYPDAIWWSVETATTVGYGDRYPVTE-EGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CCGGGTTTTTTGGGGCCSCCSSCCCSS-SCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred ccHHHHHHHHHHHHhcccCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999 999999987 999999999999999999999999998876544
No 15
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.85 E-value=1.5e-08 Score=83.98 Aligned_cols=54 Identities=22% Similarity=0.463 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 009210 368 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (540)
Q Consensus 368 Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~ 422 (540)
|..|+||+++|+|| |||+.|.+. .+++++++.+++|..++++++|.+++.++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~-~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTD-FGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 77899999999999 999999987 9999999999999999999999999887643
No 16
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.84 E-value=1.9e-08 Score=80.74 Aligned_cols=52 Identities=19% Similarity=0.491 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009210 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFL 419 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il 419 (540)
.|..|+||++.|+|| |||+.|.|+ .+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~-~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTP-LGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367799999999999 999999987 9999999999999999999999999875
No 17
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=98.82 E-value=4.5e-09 Score=94.40 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=60.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 469 ECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 469 e~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.+++++.||++||.++..+++.++++++|+|+++++..+..++..++...|.+||+|+++||.++.+|||.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~ 75 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVV 75 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEE
Confidence 35699999999999999999999999999999999999999999999999999999999999999999986
No 18
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.68 E-value=1.2e-09 Score=100.16 Aligned_cols=63 Identities=14% Similarity=0.344 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHH
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAM 429 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~ 429 (540)
..|..|+||+++|+|| |||+.|.|+ .+++++++.+++|.+++++++|.+++.+.+....+.+.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~-~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~ 130 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQ 130 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSS-TTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577799999999999 999999997 99999999999999999999999999988766554433
No 19
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.52 E-value=1.7e-07 Score=93.73 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~ 422 (540)
..|..|+|||+.|+|| |||+.|.+. ..++++++.+++|.+++|+++|.+.+.++..
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~-~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGP-LANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4578899999999999 999999986 8999999999999999999999988877543
No 20
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.44 E-value=1.4e-07 Score=95.30 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
..|..|+|||+.|+|| |||++|.+. .+++++++.+++|.+++|+++|.+.+.+.....
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~-~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTV-YAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999 999999986 999999999999999999999999988876543
No 21
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.44 E-value=5.6e-07 Score=89.72 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhCC
Q 009210 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQ 444 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~~~~~~~~~~l~~ym~~~~ 444 (540)
.|..|+||+++|+|| |||+.|.|. ..++++++.+++|..+++++++.+++.+.... +..+..++..+.+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~-~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~------~~~i~~le~~~~~~~ 187 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTD-AGRLFCIFYALVGIPLFGILLAGVGDRLGSSL------RHGIGHIEAIFLKWH 187 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTHHHHHHHTTTC
T ss_pred ChhhhhHhhheeeeecccCCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHhccc
Confidence 689999999999999 999999997 99999999999999999999999999986542 233344455555566
Q ss_pred CChH
Q 009210 445 LPQG 448 (540)
Q Consensus 445 lp~~ 448 (540)
.++.
T Consensus 188 ~~~~ 191 (309)
T 3um7_A 188 VPPE 191 (309)
T ss_dssp --CC
T ss_pred cchh
Confidence 6554
No 22
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.30 E-value=2.5e-06 Score=85.91 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
.|..|+|||+.|||| |||+.|.+. ..++++++.+++|.+++|+++|.+.+.++....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~-~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTV-YAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577899999999999 999999986 999999999999999999999999988876543
No 23
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=98.25 E-value=8.5e-07 Score=77.60 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=63.2
Q ss_pred cCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 475 NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 475 ~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
++|..+|.+...+...++++++|+|+++++..+..|+..++...|.+||+|+++||.++.+|||.
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~ 71 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVME 71 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999996
No 24
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.19 E-value=3.7e-06 Score=91.74 Aligned_cols=52 Identities=19% Similarity=0.534 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 009210 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGN-IKVFL 419 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~-i~~il 419 (540)
.|..|+||+++|+|| |||++|.|. .+++++++++++|.+++++.++. +.+.+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESD-AGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367799999999999 999999986 99999999999999999999998 55544
No 25
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.02 E-value=2.7e-06 Score=84.82 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhhcC--ccCccccCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcchHH
Q 009210 367 KILFPIFWGLMTLST--FGNLESTTEWLEV------VFNIIVLTSGLLLVTMLIGNIKVFLHATTSKK 426 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t~~~E~------i~~i~~mi~G~~~~a~iig~i~~il~~~~~~~ 426 (540)
.|+.|+||++.|+|| |||+.|.++ .++ +++++++++|..+++++++.+++.+.....++
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~-~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGAD-PRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCC-TTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999 999999987 665 69999999999999999999999887776443
No 26
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.00 E-value=2.3e-05 Score=79.06 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhcC--ccCccccC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 367 KILFPIFWGLMTLST--FGNLESTT-EWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t-~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
.+..++|||+.|+|| |||+.|.. ....++++++.+++|.++.|+.+|.+.+-++...+
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 456799999999999 99999973 23789999999999999999999988777766544
No 27
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.99 E-value=1e-05 Score=79.50 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009210 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 421 (540)
Q Consensus 367 ~Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~ 421 (540)
.|..|+|||++|+|| |||++|.|+ ..++++++.+++|..+++++++.+++.+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~-~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSD-GGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999 999999997 999999999999999999999999876544
No 28
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=97.89 E-value=9.7e-06 Score=80.53 Aligned_cols=69 Identities=6% Similarity=0.093 Sum_probs=64.4
Q ss_pred HHHhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 471 EMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 471 ~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.-..+||+..|.+...+...+.++++|+|+++++..+..|+..++...|.||++|+++||.++.+|||.
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~ 87 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVME 87 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEE
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999999986
No 29
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.89 E-value=9e-06 Score=79.84 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhcC--ccCccccCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 009210 368 ILFPIFWGLMTLST--FGNLESTTEW------LEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (540)
Q Consensus 368 Yl~slYwai~TmtT--yGDi~p~t~~------~E~i~~i~~mi~G~~~~a~iig~i~~il~~~ 422 (540)
|+.|+||++.|+|| |||+.|.++. .-++++++.+++|..+++++++.+++++..-
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999 9999999862 1499999999999999999999998876543
No 30
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.84 E-value=0.00019 Score=68.65 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhheeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccc
Q 009210 127 ITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPL 201 (540)
Q Consensus 127 ~~~~~~~~~~d~~F~~Di~l~F~t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~ 201 (540)
..+..+|.++-++|.+|+++++... + -.++|++ .+|-++|++.++|.
T Consensus 42 ~~l~~~e~~~~~iF~~E~~lri~~~-------------------------~--~~~~y~~-~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 42 ETIHLLDYGITIFFVIEILIRFIGE-------------------------K--QKADFFK-SGWNIFDTVIVAIS 88 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-------------------------C--chhHHhc-CCcHHHHHHHHHHH
Confidence 4567789999999999999998532 1 0257887 48999999887765
No 31
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=97.81 E-value=7.8e-06 Score=70.90 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeec-CCCEEEeCCCcCCeEEEEeC
Q 009210 477 PEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFT-KGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 477 p~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~-pgd~I~~~Gd~~~~mYfI~n 540 (540)
||+.|.+-......++++++|+|+.+++..+..|+..++...|. +|++|+++||.++.+|||.+
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~ 66 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILN 66 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCB
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEe
Confidence 55566666666667789999999999999999999999999999 99999999999999999863
No 32
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.73 E-value=2.4e-06 Score=86.86 Aligned_cols=56 Identities=18% Similarity=0.475 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhcC--ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 368 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 368 Yl~slYwai~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
|..|+||+++|+|| |||+.|.|. .+++++++++++|.++++++++.+++.+.+...
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~-~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTP-LGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCS-SHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999 999999987 999999999999999999999999988876543
No 33
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.71 E-value=0.00013 Score=73.66 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhhhcC--ccCcccc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 009210 366 EKILFPIFWGLMTLST--FGNLEST-TEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (540)
Q Consensus 366 ~~Yl~slYwai~TmtT--yGDi~p~-t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~~~~ 424 (540)
..+..+||||+.|+|| |||+.|. .+...++++.+.+++|.++.|+.+|-+.+-++...+
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 154 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK 154 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4577899999999999 9999874 224899999999999999999999988777765443
No 34
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=97.64 E-value=4.5e-05 Score=68.24 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 480 LRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 480 Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
-|.+-......++|+++|+|+++++..+..|+..++...|.+||+|+++||.++.+|||.
T Consensus 27 ~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~ 86 (161)
T 3idb_B 27 PKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVID 86 (161)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred CCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEE
Confidence 344555566788999999999999999999999999999999999999999999999986
No 35
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=97.63 E-value=9.5e-05 Score=63.96 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=48.6
Q ss_pred HHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 489 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 489 ~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
..++++++|+|+++++..+..++..++...|.||++|+++||.++.+|||.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~ 59 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVV 59 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEE
Confidence 447899999999999999999999999999999999999999999999986
No 36
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=97.54 E-value=9.4e-05 Score=65.66 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=49.9
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 487 ~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
....++++++|+|+++++..+..|+..++...|.+||+|+++||.++.+|||.
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~ 86 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVID 86 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEE
Confidence 44567999999999999999999999999999999999999999999999996
No 37
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=97.54 E-value=5.4e-05 Score=65.53 Aligned_cols=49 Identities=31% Similarity=0.584 Sum_probs=47.1
Q ss_pred HHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 491 ~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
++++++|+|+++++..+..|+..++...|.+||+|+++||.++.+|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~ 54 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFII 54 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEE
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEE
Confidence 5688999999999999999999999999999999999999999999986
No 38
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=97.54 E-value=7e-05 Score=65.01 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=47.9
Q ss_pred HHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 490 ~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.+.++++|+|+++++..+..++..++...|.+||+|+++||.++.+|||.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~ 54 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLL 54 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEE
Confidence 46789999999999999999999999999999999999999999999996
No 39
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.51 E-value=0.00023 Score=63.23 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhheeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchhh
Q 009210 127 ITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQI 204 (540)
Q Consensus 127 ~~~~~~~~~~d~~F~~Di~l~F~t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i 204 (540)
..+..+|.++-++|.+|.++++..+ .| .++|++ + =++|++|++|+...
T Consensus 52 ~~~~~id~~~~~iF~~Ey~lRl~~a---------------~~------------k~~f~~--~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 52 VRLYLVDLILVIILWADYAYRAYKS---------------GD------------PAGYVK--K-TLYEIPALVPAGLL 99 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------TC------------HHHHHH--H-STTTHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC---------------Cc------------HHHHHH--H-HHHHHHHHHHHHHH
Confidence 4567889999999999999999765 12 247994 4 68999999999533
No 40
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=97.45 E-value=0.00011 Score=64.27 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=48.3
Q ss_pred HHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEeC
Q 009210 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 490 ~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
.++++++|+|+++++..+..++..++...|.+||+|+++||.++.+|||.+
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~ 54 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTE 54 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEE
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEe
Confidence 468999999999999999999999999999999999999999999999863
No 41
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=97.44 E-value=7.6e-05 Score=68.84 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=60.3
Q ss_pred HHHHHhcCChhH----HHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 469 ECEMISNLPEGL----RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 469 e~~il~~Lp~~L----r~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
+.+..+.++|+| +.+.......++++++|+|+++++..+..++..++...|.+|++|+++||.++.+|||.
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~ 87 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLIL 87 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEE
Confidence 444555554443 45566667789999999999999999999999999999999999999999999999996
No 42
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=97.35 E-value=0.00024 Score=62.43 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=48.0
Q ss_pred HHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 490 ~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.++++++|+|+++++..+..++..++...|.+|++|+++||.++.+|||.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~ 60 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLI 60 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEE
Confidence 46899999999999999999999999999999999999999999999986
No 43
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.33 E-value=0.00058 Score=59.51 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhheeEeecCcccCCcccccCCCCCCCCCChHHHHHHhhccccchHhHHhhhccchh
Q 009210 127 ITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQ 203 (540)
Q Consensus 127 ~~~~~~~~~~d~~F~~Di~l~F~t~y~~~~~~~~~G~lV~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~ 203 (540)
..+..+|.++-++|.+|.++++..+ .+ .++|+ + |=++|+++++|+..
T Consensus 37 ~~l~~~d~~~~~iFt~E~~lRl~~~---------------~~------------~~~y~--~-~niiDllailp~~~ 83 (132)
T 1ors_C 37 VRLYLVDLILVIILWADYAYRAYKS---------------GD------------PAGYV--K-KTLYEIPALVPAGL 83 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------------TS------------TTTTT--T-TCGGGTGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC---------------CC------------HHHHH--H-HHHHHHHHHHHHHH
Confidence 4567899999999999999999754 11 14788 7 99999999999853
No 44
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=97.05 E-value=0.00062 Score=71.90 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=61.1
Q ss_pred CChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 476 LPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 476 Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.|+..|.+-......+.++++|+|+++++..+..|+..++...|.+|++|+++||.++.+|||.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~ 90 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVL 90 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEE
Confidence 5788898888899999999999999999999999999999999999999999999999999985
No 45
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=97.05 E-value=0.00062 Score=68.44 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=48.5
Q ss_pred HHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 489 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 489 ~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
..+.++++|+|+++++..+..|+..++...|.+||+|+++||.++.+|||.
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~ 61 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLIS 61 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEE
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEE
Confidence 347899999999999999999999999999999999999999999999996
No 46
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=97.05 E-value=0.00061 Score=66.94 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 483 DIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 483 ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
+-..+...+.++++|+|+++++..+..|+..++...|.+|++|+++||.++.+|||.
T Consensus 31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~ 87 (291)
T 2qcs_B 31 YKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVID 87 (291)
T ss_dssp HHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred HHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEe
Confidence 333456678999999999999999999999999999999999999999999999986
No 47
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=96.97 E-value=0.00061 Score=64.75 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=49.7
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 487 ~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
....+.++++|+|+++++..+..++..++...|.+|++|+++||.++.+|||.
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~ 59 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVI 59 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEE
Confidence 34567899999999999999999999999999999999999999999999986
No 48
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0011 Score=62.98 Aligned_cols=52 Identities=15% Similarity=0.317 Sum_probs=48.8
Q ss_pred HHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 488 ~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
++..+++++|+|+++++..+..++..++...|.||++|+++||.++.+|||.
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~ 173 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIE 173 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEE
Confidence 4457788999999999999999999999999999999999999999999986
No 49
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=96.88 E-value=0.00082 Score=70.24 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 481 r~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
|.+-......+.|+++++|+++++..+..|+..++...|.+|++|+++||.++.+|||.
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~ 193 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVID 193 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEE
Confidence 34445566778999999999999999999999999999999999999999999999996
No 50
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=96.74 E-value=0.0015 Score=61.96 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=48.6
Q ss_pred HHHHHhhcCcccccCCHHHHHHHHHh--cceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 488 LCLDLVRQVPLFQHMDDLVLENICDR--VKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 488 ~~~~~l~~v~lF~~~~~~fl~~L~~~--lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.....++++|+|+++++..+..++.. ++...|.+||+|+++||.++.+|||.
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~ 68 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLL 68 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEE
Confidence 34577899999999999999999998 99999999999999999999999986
No 51
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=96.73 E-value=0.00095 Score=68.85 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEeC
Q 009210 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 481 r~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
|.+-......+.|+++|+|+++++..+..|+..++...|.+|++|+++||.++.+|||.+
T Consensus 120 ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~ 179 (381)
T 4din_B 120 KDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQ 179 (381)
T ss_dssp CCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSS
T ss_pred CCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEe
Confidence 334444566789999999999999999999999999999999999999999999999853
No 52
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=96.68 E-value=0.0014 Score=76.10 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=56.1
Q ss_pred HHhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 472 MISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 472 il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.|+.=| .-|.+=-.++-.+.|+++++|+++++..+.+|+..|+.+.|.+||+|+++||.|+.+|+|.
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIl 90 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVL 90 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEE
Confidence 444433 4464444445567899999999999999999999999999999999999999999999985
No 53
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=96.60 E-value=0.0035 Score=61.35 Aligned_cols=53 Identities=9% Similarity=0.241 Sum_probs=49.0
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 487 ~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.+...+++++++|+++++..+..++..++...|.+|++|+++||.++.+|||.
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~ 205 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIIL 205 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEE
Confidence 34457788999999999999999999999999999999999999999999986
No 54
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=96.52 E-value=0.0021 Score=63.38 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=49.7
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 487 ~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
..+..+++++|+|+++++..+..++..++...|.+|++|+++||.++.+|||.
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~ 205 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIIS 205 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999996
No 55
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=96.49 E-value=0.0021 Score=60.45 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=37.3
Q ss_pred HHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 490 ~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
...+++.++|.++++..+..++..++...|.+||+|+++||.++.+|||.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~ 59 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVI 59 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEE
Confidence 46788999999999999999999999999999999999999999999986
No 56
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=96.45 E-value=0.0029 Score=66.75 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCcccccCCHHHHHHHHHhccee-eecCCCEEEeCCCcCCeEEEEeC
Q 009210 486 YHLCLDLVRQVPLFQHMDDLVLENICDRVKSL-IFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 486 ~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~-~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
.....+.++++|+|+++++..+..|+..++.. .|.+|++|+++||.++.+|||.+
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~ 387 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILK 387 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEE
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEE
Confidence 34456789999999999999999999999865 89999999999999999999963
No 57
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=96.21 E-value=0.0047 Score=68.70 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=58.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHhcc-eeeecCCCEEEeCCCcCCeEEEEeC
Q 009210 470 CEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVK-SLIFTKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 470 ~~il~~Lp~~Lr~ei~~~~~~~~l~~v~lF~~~~~~fl~~L~~~lk-~~~~~pgd~I~~~Gd~~~~mYfI~n 540 (540)
..++.. |+..|.+-......+.++++|+|+++++..+..|+..++ ...|.+|++|+++||.++.+|||.+
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIls 82 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILK 82 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEE
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEE
Confidence 345543 445566555666678999999999999999999999998 7899999999999999999999963
No 58
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=95.86 E-value=0.0045 Score=63.72 Aligned_cols=53 Identities=11% Similarity=0.274 Sum_probs=49.2
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 487 ~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
.++..+++++++|+++++..+..++..++...|.+|++|+++||.++.+|||.
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~ 296 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIIT 296 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEE
Confidence 34557888999999999999999999999999999999999999999999996
No 59
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=95.70 E-value=0.0058 Score=63.72 Aligned_cols=52 Identities=10% Similarity=0.275 Sum_probs=48.9
Q ss_pred HHHHHhhcCcccccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 488 ~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
++..+++++++|+.+++..+..++..++...|.+|++|+++||.++.+|||.
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~ 315 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVE 315 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEE
Confidence 4557888999999999999999999999999999999999999999999996
No 60
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=94.28 E-value=0.042 Score=63.77 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHHhcceeee-cCCCEEEeCCCcCCeEEEEeC
Q 009210 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIF-TKGEVVRFKSNILINITTVTN 540 (540)
Q Consensus 487 ~~~~~~l~~v~lF~~~~~~fl~~L~~~lk~~~~-~pgd~I~~~Gd~~~~mYfI~n 540 (540)
+...+.+.++|+|++++....+.|+..|....+ ..|++|+++||.++.+|||.+
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIls 387 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILK 387 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEe
Confidence 345677899999999999999999999997765 569999999999999999864
No 61
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=92.32 E-value=0.088 Score=50.60 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=35.2
Q ss_pred ccCCHHHHHHHHHhcceeeecCCCEEEeCCCcCCeEEEEe
Q 009210 500 QHMDDLVLENICDRVKSLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 500 ~~~~~~fl~~L~~~lk~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
..++++.+..++..++...|.+||+|+++||.++.+|||.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~ 94 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV 94 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEE
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEE
Confidence 4589999999999999999999999999999999999986
No 62
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=84.10 E-value=0.8 Score=43.11 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcc---eeeecCCCEEEeCCCcCCeEEEEe
Q 009210 504 DLVLENICDRVK---SLIFTKGEVVRFKSNILINITTVT 539 (540)
Q Consensus 504 ~~fl~~L~~~lk---~~~~~pgd~I~~~Gd~~~~mYfI~ 539 (540)
+.+++.|+.... ...|.+||+|+++||.++.+|||.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~ 68 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLL 68 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEE
Confidence 788888888888 999999999999999999999986
No 63
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=36.51 E-value=36 Score=37.65 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhcC-ccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009210 367 KILFPIFWGLMTLST-FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 421 (540)
Q Consensus 367 ~Yl~slYwai~TmtT-yGDi~p~t~~~E~i~~i~~mi~G~~~~a~iig~i~~il~~ 421 (540)
....++++++.+++. -++..|.+. ..+++.+++++++.++.+.--+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g~~~~p~~~-~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQGADISPRSL-SGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC------CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcCCcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355788999999887 445778876 999999999999999999999999999875
No 64
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=28.07 E-value=35 Score=25.52 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=11.3
Q ss_pred HHhcCChhHHHHHH
Q 009210 472 MISNLPEGLRRDIK 485 (540)
Q Consensus 472 il~~Lp~~Lr~ei~ 485 (540)
.|+.||++||.+|.
T Consensus 8 wL~~LP~~Lq~kV~ 21 (70)
T 2lh0_A 8 FLDELPESLSRKIG 21 (70)
T ss_dssp GGGGSCHHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 67888888888876
No 65
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=20.66 E-value=78 Score=26.07 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHH
Q 009210 431 LKMRNIEWWMRKRQLPQ-----GFRQRVRNYERQR 460 (540)
Q Consensus 431 ~~~~~l~~ym~~~~lp~-----~L~~rV~~y~~y~ 460 (540)
-+..+++++++.+++|. +|..||..|++-.
T Consensus 40 LtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~ 74 (114)
T 2rnn_A 40 LKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNA 74 (114)
T ss_dssp CCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhc
Confidence 34568999999999995 8999999999853
Done!