Query 009211
Match_columns 540
No_of_seqs 383 out of 1965
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 21:20:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 1.2E-29 4E-34 276.9 16.9 291 41-431 163-476 (506)
2 3hsi_A Phosphatidylserine synt 99.9 1.7E-24 5.7E-29 232.8 15.7 139 238-429 257-401 (458)
3 1byr_A Protein (endonuclease); 99.6 8.8E-15 3E-19 133.7 13.5 118 238-428 13-130 (155)
4 1xdp_A Polyphosphate kinase; P 99.6 1.2E-14 4.1E-19 162.4 16.2 219 14-430 390-632 (687)
5 4ggj_A Mitochondrial cardiolip 99.6 7.4E-15 2.5E-19 140.6 10.9 118 239-431 46-163 (196)
6 2o8r_A Polyphosphate kinase; s 99.4 1.2E-12 4.3E-17 145.4 17.3 113 237-431 517-639 (705)
7 4gel_A Mitochondrial cardiolip 99.3 2.1E-11 7.1E-16 118.0 11.7 137 238-430 57-194 (220)
8 1xdp_A Polyphosphate kinase; P 99.3 1.3E-11 4.6E-16 137.8 11.0 119 241-430 349-479 (687)
9 3hsi_A Phosphatidylserine synt 99.1 3E-10 1E-14 122.0 11.9 128 238-414 36-165 (458)
10 1v0w_A Phospholipase D; hydrol 99.0 6.2E-10 2.1E-14 121.1 11.0 138 238-428 65-207 (506)
11 2o8r_A Polyphosphate kinase; s 98.5 2.2E-07 7.4E-12 103.6 10.5 120 240-430 353-486 (705)
12 1byr_A Protein (endonuclease); 98.2 1.3E-06 4.3E-11 79.1 4.7 85 14-138 51-149 (155)
13 4ggj_A Mitochondrial cardiolip 98.1 1.9E-06 6.4E-11 82.0 5.7 87 14-139 83-179 (196)
14 4gel_A Mitochondrial cardiolip 97.7 3.6E-05 1.2E-09 73.8 5.4 31 109-139 181-211 (220)
15 3qph_A TRMB, A global transcri 96.2 0.0015 5.3E-08 67.1 2.3 52 237-308 117-168 (342)
16 2c1l_A Restriction endonucleas 90.1 0.88 3E-05 44.1 8.2 89 285-428 53-144 (358)
17 2f5t_X Archaeal transcriptiona 70.4 7.6 0.00026 37.3 6.6 50 238-307 9-58 (233)
18 1q32_A TDP1P;, tyrosyl-DNA pho 51.9 7.9 0.00027 41.8 3.3 42 384-425 426-487 (544)
19 1jy1_A TDP1, tyrosyl-DNA phosp 37.6 22 0.00076 37.6 3.9 42 385-426 344-400 (464)
20 1jy1_A TDP1, tyrosyl-DNA phosp 30.1 20 0.0007 37.9 2.1 28 387-414 116-146 (464)
21 3ech_C 25-MER fragment of prot 29.1 39 0.0013 20.1 2.2 19 469-487 3-22 (25)
22 3sq7_A Tyrosyl-DNA phosphodies 28.3 23 0.00077 37.6 2.1 24 386-409 101-128 (470)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.96 E-value=1.2e-29 Score=276.90 Aligned_cols=291 Identities=18% Similarity=0.150 Sum_probs=150.8
Q ss_pred cccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeC
Q 009211 41 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG 120 (540)
Q Consensus 41 ~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~G 120 (540)
+.+||+|++|||++ +||+||+||++++|.+. ..+|||++++|+|
T Consensus 163 ~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~y~~~----------------------------~~~~~D~~v~i~G 206 (506)
T 1v0w_A 163 FSWNHSKILVVDGQ--------SALTGGINSWKDDYLDT----------------------------THPVSDVDLALTG 206 (506)
T ss_dssp TBCBCCCEEEETTT--------EEEEESCCCCHHHHTSS----------------------------SSCCBEEEEEEES
T ss_pred cccceeeEEEECCc--------EEEeeccccCccccccC----------------------------CCCceEEEEEEEC
Confidence 45999999999998 99999999987677531 1489999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhhhhhccccccchhhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCe
Q 009211 121 PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENW 200 (540)
Q Consensus 121 paa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 200 (540)
|+|.++...|.++|+....... .+..+ |....- ....++... .. ..|.. ....+..
T Consensus 207 ~~v~~l~~~F~~~W~~~~~~~~---~~~~~--~~~~~~-~~~~~~~~~-~~---------~~p~~--------~~~~~~~ 262 (506)
T 1v0w_A 207 PAAGSAGRYLDTLWTWTCQNKS---NIASV--WFAASG-NAGCMPTMH-KD---------TNPKA--------SPATGNV 262 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT---STTTE--EEEEST-TCCCCTTHH-HH---------HSCSS--------CCCCSSE
T ss_pred HHHHHHHHHHHHHHhhhccccC---Chhhh--cccccc-ccccCchhc-cc---------cCccc--------Ccccccc
Confidence 9999999999999997543210 00000 000000 000000000 00 00100 0011222
Q ss_pred EEEEEeecCCCCCCCCCCCcch-----hhhhhhhccccc--------cchHHHHHHHHHHHHhhccEEEEEeeeeeccCC
Q 009211 201 HVQIFRSIDSGSVKGFPKSIED-----IDDQSLICAKDV--------VIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSY 267 (540)
Q Consensus 201 ~vQvlRs~~~~~~~~~p~~~~~-----~~~~~l~~~~~~--------~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~ 267 (540)
.+|+............|..... +...-+++..+. ..+.++..+|+++|.+||++|||++|||.+--.
T Consensus 263 ~~~~~~~~~~~i~~~~P~~~~~~~~w~~~~~~~~~d~P~~~~~~~~~~~~~~~~~~~~~~I~~A~~~I~I~tq~~~pyf~ 342 (506)
T 1v0w_A 263 PVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCP 342 (506)
T ss_dssp EEEEEECCCSSSCSCCTTCCCCCCCCCCSSSCSSTTCCCTTTSCHHHHHHCHHHHHHHHHHHTCSSEEEEEESCSSCCTT
T ss_pred cceecccccceeecCCccccccccCcccccceeeccccccccCcccccccccHHHHHHHHHhCcCcEEEEEecccccccc
Confidence 3333221100000001110000 000000111000 013579999999999999999999966653110
Q ss_pred CCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchhHHHHHHHH-HHHHHhHH---H--HHHHHH
Q 009211 268 AWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQS-QTMQMMYS---V--VAQELR 341 (540)
Q Consensus 268 ~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~~~il~~~~-~t~~~~~~---~--i~~~L~ 341 (540)
|.. .....+..+|.+|++ +||+|+||+|..+.... +.+.. ..+..+.+ . -...|.
T Consensus 343 --p~~-------~~~~~i~~aL~~Aa~--rGV~VrIl~~~~~~~~~--------~~~a~~~~~~~L~~~~~~l~~gv~ll 403 (506)
T 1v0w_A 343 --PLP-------RYDIRLYDALAAKMA--AGVKVRIVVSDPANRGA--------VGSGGYSQIKSLSEISDTLRNRLANI 403 (506)
T ss_dssp --TSC-------SCCHHHHHHHHHHHH--TTCEEEEEECCGGGCC--------------CCCCSCTHHHHHHHHHHHHHH
T ss_pred --Ccc-------cchHHHHHHHHHHHh--CCCcEEEEeCCCCchHH--------HHHhHHHHHHHHHHhhhhhcccchhc
Confidence 100 001467788887765 78999999997652111 00100 00000000 0 011222
Q ss_pred HcCCc-cc--cCCccccccCCcccCCCcccccCCCCCccccccc-ccccceeeeEEEEEeCeEEEecCcccccccCCCCC
Q 009211 342 EMQVD-AH--PQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKN-QRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSK 417 (540)
Q Consensus 342 ~~Gv~-~~--p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iyvHSKlmIVDD~~~~IGSANin~RSm~g~~ 417 (540)
++|+- .. ....+.+|.++..... .+ .....++|+|+|||||++++|||+|||.||+
T Consensus 404 ~~g~~e~~~~~~~~l~i~~~~~~~~~----------------~~~~~~~~~lHaK~~vvD~~~~~vGS~N~d~rS~---- 463 (506)
T 1v0w_A 404 TGGQQAAKTAMCSNLQLATFRSSPNG----------------KWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWL---- 463 (506)
T ss_dssp HTSHHHHHHHHHHHEEEEECCSSSSS----------------SCTTSCCCCBCCEEEEETTTEEEEESCCSSCCCS----
T ss_pred ccccchhccccccceeeeeccccCcc----------------ccccCccccceEEEEEECCcEEEEeCCCCCCcch----
Confidence 33320 00 0000122222110000 00 0125799999999999999999999999999
Q ss_pred CcceEEEEecCCcc
Q 009211 418 DTEIAMGSYQPHHT 431 (540)
Q Consensus 418 DsEi~v~i~d~~~~ 431 (540)
+|++++|++++++
T Consensus 464 -~E~~l~i~~~~~a 476 (506)
T 1v0w_A 464 -QDFGYIVESPEAA 476 (506)
T ss_dssp -BCEEEEEECHHHH
T ss_pred -hhceeEecCHHHH
Confidence 4999999987543
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.91 E-value=1.7e-24 Score=232.83 Aligned_cols=139 Identities=19% Similarity=0.160 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009211 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
..+..+|+++|.+|+++|||+|+||+++ ..+..+|..|++ +||+|.||+|.....+.-...
T Consensus 257 ~~i~~~~~~lI~~A~~~I~I~tpYf~p~-----------------~~~~~aL~~Aa~--rGV~VrIi~~~~~and~y~~~ 317 (458)
T 3hsi_A 257 NELNQVIEDLFLQVQKKLVICTPYFNFP-----------------RTLQHKIATLLE--NGKRVEIIVGDKVANDFYIPP 317 (458)
T ss_dssp CHHHHHHHHHHHTCSSEEEEECSSSCCC-----------------HHHHHHHHHHHT--TTCEEEEEEECGGGSTTCCCT
T ss_pred hHHHHHHHHHHHhcccEEEEEEeccCCC-----------------HHHHHHHHHHHH--CCCeEEEEECCccccCCccCC
Confidence 5688999999999999999999999975 356777777754 889999999986321100000
Q ss_pred hHHHHHHHHHHH--HHhHHHH---HHHHHHcC-CccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeee
Q 009211 318 VQEILFWQSQTM--QMMYSVV---AQELREMQ-VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHA 391 (540)
Q Consensus 318 ~~~il~~~~~t~--~~~~~~i---~~~L~~~G-v~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHS 391 (540)
..+++.+..... +.....+ ++.|.++| +++ .+|.. ...++|+
T Consensus 318 ~~~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V------~i~~~--------------------------~~~~lHa 365 (458)
T 3hsi_A 318 EQPFKMAGALPYLYESNLRRFCEKFETQIESGQLVV------RLWRD--------------------------GDNTYHL 365 (458)
T ss_dssp TSCCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEE------EEECB--------------------------TTBEECC
T ss_pred cchhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEE------EEEec--------------------------CCCceeE
Confidence 000111111110 0000011 24566777 221 12321 1569999
Q ss_pred EEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCC
Q 009211 392 KGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 429 (540)
Q Consensus 392 KlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~ 429 (540)
|+|||||++++|||+|||.||+. .|+|++++|++++
T Consensus 366 K~~vvD~~~~~vGS~N~d~RS~~--lN~E~~~~i~~~~ 401 (458)
T 3hsi_A 366 KGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDPQ 401 (458)
T ss_dssp CEEEETTTEEEEECCCCSHHHHH--TCEEEEEEEECTT
T ss_pred EEEEECCeEEEecCCCCCcchhh--hCceeEEEEeCCc
Confidence 99999999999999999999998 5699999999985
No 3
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.59 E-value=8.8e-15 Score=133.67 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009211 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.++.++++++|++|+++|+|+++||.. ..+..+|.+|++ +||+|+||++..+. ..
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~------------------~~i~~aL~~a~~--rGV~Vril~~~~~~----~~- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAAKK--RGVDVKIVIDERGN----TG- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHHHH--TTCEEEEEEESTTC----CS-
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC------------------HHHHHHHHHHHH--CCCEEEEEEeCccc----cc-
Confidence 468899999999999999999988832 256777877765 78999999997421 00
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEe
Q 009211 318 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 397 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 397 (540)
+... ...+.|.+.|+++. ++. ....+|+|++|||
T Consensus 68 ------~~~~-------~~~~~L~~~gv~v~------~~~---------------------------~~~~~H~K~~iiD 101 (155)
T 1byr_A 68 ------RASI-------AAMNYIANSGIPLR------TDS---------------------------NFPIQHDKVIIVD 101 (155)
T ss_dssp ------HHHH-------HHHHHHHHTTCCEE------EEC---------------------------SSSCCCCCEEEET
T ss_pred ------cccH-------HHHHHHHHCCCeEE------EcC---------------------------CcccccceEEEEC
Confidence 1111 23577888898752 111 0247899999999
Q ss_pred CeEEEecCcccccccCCCCCCcceEEEEecC
Q 009211 398 DEYVIMGSANINQRSMAGSKDTEIAMGSYQP 428 (540)
Q Consensus 398 D~~~~IGSANin~RSm~g~~DsEi~v~i~d~ 428 (540)
|+++++||+|++.+|+.. +.|+++.+.++
T Consensus 102 ~~~~~iGS~N~~~~~~~~--n~E~~~~i~~~ 130 (155)
T 1byr_A 102 NVTVETGSFNFTKAAETK--NSENAVVIWNM 130 (155)
T ss_dssp TTEEEEESCCBSHHHHHT--SCEEEEEEESC
T ss_pred CCEEEEECCCCCcccccc--CcccEEEEcCc
Confidence 999999999999999974 49999999874
No 4
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.58 E-value=1.2e-14 Score=162.38 Aligned_cols=219 Identities=16% Similarity=0.141 Sum_probs=138.3
Q ss_pred CCCcEE-EEecCCCCC----ccchhhhc--------cccccccCccceEEEcCCCCCCCCceE---EEECcccCCCCCCC
Q 009211 14 HSSVNC-VLAPRYASS----KLSYFKQQ--------IVGTIFTHHQKCVLVDTQASGNNRKIT---AFIGGIDLCDGRYD 77 (540)
Q Consensus 14 ~~~V~~-~l~~~~~~~----~~~~~~~~--------~~~~~~~hHqK~vVID~~~~~~~~~~v---AFvGGiDl~~~R~D 77 (540)
.+||+| ++++..+.. ...|++.+ .....++.|.|++|||++..+ .+ ||+||.|+....+
T Consensus 390 ~rGV~VrVLvd~~a~~~~~~n~~~~~~L~~aGV~V~~~~~~~k~H~Ki~VID~re~~----~i~~~a~iGS~N~d~rs~- 464 (687)
T 1xdp_A 390 HNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENG----EVVRYAHIGTGNFNEKTA- 464 (687)
T ss_dssp HTTCEEEEEECTTCSSTTTTTTTTTHHHHHHTCEEEECCTTCEECCEEEEEEEEETT----EEEEEEEEESSCSCTTGG-
T ss_pred hcCCEEEEEECCCcccchhhHHHHHHHHHHCCCEEEEecCCccccceEEEEEeccCC----eEEEEEEEeCCcCCcchh-
Confidence 589999 888866532 22344433 112245799999999952100 15 9999999876311
Q ss_pred CCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCH-HHHHHHHHHHHHHHHhcccchhhhhhhccccccch
Q 009211 78 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 156 (540)
Q Consensus 78 t~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~~~~~ 156 (540)
.-|+|+++.+.|| +|.++...|...|..+....
T Consensus 465 -------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~--------------- 498 (687)
T 1xdp_A 465 -------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVT--------------- 498 (687)
T ss_dssp -------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC---------------
T ss_pred -------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhccccc---------------
Confidence 2589999999987 69999999999997532110
Q ss_pred hhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccccc
Q 009211 157 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 236 (540)
Q Consensus 157 ~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 236 (540)
+. +++.+ |.. .
T Consensus 499 -------------------------~~-------------------~l~~s---------P~~----------------~ 509 (687)
T 1xdp_A 499 -------------------------FD-------------------YLMVS---------PQN----------------S 509 (687)
T ss_dssp -------------------------CS-------------------SCEEE---------TTS----------------H
T ss_pred -------------------------hh-------------------heeeC---------Cch----------------h
Confidence 00 01111 110 1
Q ss_pred hHHHHHHHHHHHHhhcc----EEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCC
Q 009211 237 DKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 312 (540)
Q Consensus 237 e~sI~~ayl~aI~~Ak~----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~ 312 (540)
...+...+...|+.|++ +|+|.++|+ ++ ..+..+|.+|.+ +||+|.||+++.-.
T Consensus 510 ~~~l~~~I~~ei~~A~~g~~~~I~i~~~~l-pD-----------------~~ii~AL~~Aa~--rGV~VrLivrg~c~-- 567 (687)
T 1xdp_A 510 RRLLYEMVDREIANAQQGLPSGITLKLNNL-VD-----------------KGLVDRLYAASS--SGVPVNLLVRGMCS-- 567 (687)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEEESCB-CC-----------------HHHHHHHHHHHH--TTCCEEEEESSCBC--
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEeCCC-CC-----------------HHHHHHHHHHHH--CCCEEEEEEecccc--
Confidence 23455566667888887 899998874 32 356677777764 78999999964200
Q ss_pred CCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeE
Q 009211 313 PKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAK 392 (540)
Q Consensus 313 ~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSK 392 (540)
| ..|+.-. .+-+.+... . ....-|+|
T Consensus 568 ---------------------------l-~pgvp~~-sdni~V~s~-----------------------~--~r~Leh~r 593 (687)
T 1xdp_A 568 ---------------------------L-IPNLEGI-SDNIRAISI-----------------------V--DRYLEHDR 593 (687)
T ss_dssp ---------------------------B-CTTCTTT-STTEEEEEE-----------------------C--SSSEECCC
T ss_pred ---------------------------c-CCCCCCC-CCCEEEEEe-----------------------h--hHHhhCCe
Confidence 0 0011000 000111100 0 01233888
Q ss_pred EEEE---eCeEEEecCcccccccCCCCCCcceEEEEecCCc
Q 009211 393 GMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 393 lmIV---DD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
+++. ||.+++||||||+.|||. ++.|+++.|+|+.+
T Consensus 594 I~~f~~~dd~~~~IGSAN~d~Rsl~--~n~Ev~~~I~d~~~ 632 (687)
T 1xdp_A 594 VYIFENGGDKKVYLSSADWMTRNID--YRIEVATPLLDPRL 632 (687)
T ss_dssp EEEECGGGSCEEEEESCCBSHHHHH--SEEEEEEECCSHHH
T ss_pred EEEEcCCCCCEEEEEcCccchhhhh--hheeeeEEecCHHH
Confidence 8888 889999999999999998 45999999998854
No 5
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.57 E-value=7.4e-15 Score=140.56 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchh
Q 009211 239 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 318 (540)
Q Consensus 239 sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~ 318 (540)
+....++++|++||++|+|+..+|. + .+++.+|.+|++ +||+|+||++..-...
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~y~~~-~-----------------~~i~~aL~~aa~--rGV~Vrii~D~~~~~~------ 99 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCLFAFS-S-----------------PQLGRAVQLLHQ--RGVRVRVITDCDYMAL------ 99 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEESCBC-C-----------------HHHHHHHHHHHH--TTCEEEEEESSCCC--------
T ss_pred HHHHHHHHHHHHhheEEEEEEEEeC-C-----------------HHHHHHHHHHHH--cCCcEEEEEecccccc------
Confidence 4567899999999999999974443 2 357788888865 7899999998521100
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEeC
Q 009211 319 QEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDD 398 (540)
Q Consensus 319 ~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD 398 (540)
..+ ....|.++|+++. ++. ...++|+|+||||+
T Consensus 100 -------~~~-------~~~~l~~~gi~v~------~~~---------------------------~~~~~H~K~~viD~ 132 (196)
T 4ggj_A 100 -------NGS-------QIGLLRKAGIQVR------HDQ---------------------------DLGYMHHKFAIVDK 132 (196)
T ss_dssp --------CC-------HHHHHHHTTCEEE------ECC---------------------------SSSCCCCEEEEETT
T ss_pred -------cHH-------HHHHHHhcCCCcc------ccc---------------------------ccccccCcEEEEcc
Confidence 001 2467888998752 111 13468999999999
Q ss_pred eEEEecCcccccccCCCCCCcceEEEEecCCcc
Q 009211 399 EYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 431 (540)
Q Consensus 399 ~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~ 431 (540)
+++++||+|++.+|+..| .|..++++|++.+
T Consensus 133 ~~~~~GS~N~t~~~~~~n--~E~~~~i~~~~~~ 163 (196)
T 4ggj_A 133 KVLITGSLNWTTQAIQNN--RENVLIMEDTEYV 163 (196)
T ss_dssp TEEEEESCCBCHHHHHHC--CEEEEEECCHHHH
T ss_pred eEEEecCccCChhhhccc--ceeEEEEECHHHH
Confidence 999999999999999855 9999999877543
No 6
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.44 E-value=1.2e-12 Score=145.41 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHhhcc----EEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCC--
Q 009211 237 DKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE-- 310 (540)
Q Consensus 237 e~sI~~ayl~aI~~Ak~----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~pe-- 310 (540)
...|...+..+|.+|++ +|+|.++| +++ ..+..+|.+|.+ +||+|.||+.+.--
T Consensus 517 ~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l~D-----------------~~ii~aL~~As~--~GV~V~LIVRGiC~L~ 576 (705)
T 2o8r_A 517 GEAITNLIEREIENVKRGKRGYMLLKMNG-LQD-----------------KNVITQLYRASE--AGVEIDLIVRGICCLV 576 (705)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEESC-BCC-----------------HHHHHHHHHHHH--TTCEEEEEESSCBCSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCC-----------------HHHHHHHHHHHH--CCCeEEEEEccccccC
Confidence 36789999999999999 99999998 442 356777777765 78999999942100
Q ss_pred -CCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCccccccccccccee
Q 009211 311 -GDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYV 389 (540)
Q Consensus 311 -g~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 389 (540)
|.+ + ...+.+. ++|. ...=
T Consensus 577 Pgv~--------------------------~-sdni~V~-----Sivg----------------------------r~Le 596 (705)
T 2o8r_A 577 PDMP--------------------------Q-SRNIRVT-----RLVD----------------------------MYLE 596 (705)
T ss_dssp CSSG--------------------------G-GTTEEEE-----ECCS----------------------------SSEE
T ss_pred CCCC--------------------------C-CCCeEEE-----eeHH----------------------------HHHh
Confidence 100 0 0011110 0110 2344
Q ss_pred eeEEEEE---eCeEEEecCcccccccCCCCCCcceEEEEecCCcc
Q 009211 390 HAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 431 (540)
Q Consensus 390 HSKlmIV---DD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~ 431 (540)
|+|+++. ||.+++||||||+.|||. +..|+++.++||++.
T Consensus 597 h~RIy~f~~gd~~~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~~~ 639 (705)
T 2o8r_A 597 HSRIWCFHNGGKEEVFISSADWMKRNLY--NRIETACPVLDPTLR 639 (705)
T ss_dssp CCCEEEECGGGSCEEEEESCCBCHHHHH--TSBCEEEECCSHHHH
T ss_pred cCEEEEEECCCCcEEEEeccccchhhhh--heeEEEEEEcCHHHH
Confidence 8889988 899999999999999998 559999999998643
No 7
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.26 E-value=2.1e-11 Score=117.98 Aligned_cols=137 Identities=15% Similarity=0.037 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009211 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.+..+.++++|.+||++|+|+. |++++ .+|+.+|.+|++ +||+|+||++...... ...
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~~-----------------~~I~~aL~~Aa~--RGV~VRii~D~~~~~~--~~~ 114 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAI-YTFTS-----------------LFLADSIKRALQ--RGVIIRIISDGEMVYS--KGS 114 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEC-SCBCC-----------------HHHHHHHHHHHH--HTCEEEEECCTTTTTS--TTC
T ss_pred HHHHHHHHHHHHHhhhEEEEEE-EEeCC-----------------HHHHHHHHHHHH--cCCeEEEEEechhhhh--hHH
Confidence 4566788999999999999997 44432 367888888875 7899999998642111 000
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccC-CcccCCCcccccCCCCCcccccccccccceeeeEEEEE
Q 009211 318 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCL-GKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 396 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 396 (540)
.+..|...|+.+.. .+.. ..+.... .-.+ ...........|.|++|+
T Consensus 115 ------------------~~~~~~~~~~~~~~-----~~~~~~~h~K~~----viD~-----~~~~~~~~~~~H~K~~v~ 162 (220)
T 4gel_A 115 ------------------QISMLAQLGVPVRV-----PITTNLMHNKFC----IIDG-----FERVEEIRLLRKLKFMRP 162 (220)
T ss_dssp ------------------HHHHHHHTTCCEEE-----CCSSSCBCCCEE----EESC-----HHHHHHHHHHTTCSCCCC
T ss_pred ------------------HHHHHHhcCCcEEe-----ecccccccceeE----EEcc-----hhcccccccccceecccc
Confidence 13455566664310 0000 0000000 0000 000011134567888888
Q ss_pred eCeEEEecCcccccccCCCCCCcceEEEEecCCc
Q 009211 397 DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 397 DD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
|++++++||+|++.+|+.+| .|..+++.++..
T Consensus 163 D~~~v~~GS~N~t~~s~~~N--~E~~~vi~~~~~ 194 (220)
T 4gel_A 163 CYSIVISGSVNWTALGLGGN--WENCIITADDKL 194 (220)
T ss_dssp CCCEEEEESCCBSHHHHHTS--BEEEEEECCHHH
T ss_pred ccceEEecCccccccccccC--ceEEEEEECHHH
Confidence 88999999999999999865 999999887654
No 8
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.25 E-value=1.3e-11 Score=137.83 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhcc-----EEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCC
Q 009211 241 QTAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKT 315 (540)
Q Consensus 241 ~~ayl~aI~~Ak~-----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~ 315 (540)
+++++++|++|++ +|+| ++||+++. ..++.+|++|++ +|++|+||++..+. .+.
T Consensus 349 f~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d----------------~~I~~AL~~AA~--rGV~VrVLvd~~a~--~~~ 407 (687)
T 1xdp_A 349 FEHVLELLRQASFDPSVLAIKI-NIYRVAKD----------------SRIIDSMIHAAH--NGKKVTVVVELQAR--FDE 407 (687)
T ss_dssp THHHHHHHHHHHHCTTEEEEEE-EESSCCTT----------------CHHHHHHHHHHH--TTCEEEEEECTTCS--STT
T ss_pred hhhHHHHHHHHhhCCcceEEEE-EeeeecCc----------------HHHHHHHHHHHh--cCCEEEEEECCCcc--cch
Confidence 4578899999997 9999 89998432 257788888865 78999999997641 111
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEE
Q 009211 316 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 395 (540)
Q Consensus 316 ~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmI 395 (540)
. .+. .+++.|.++|+++. +|. ....+|+|++|
T Consensus 408 ~--------~n~-------~~~~~L~~aGV~V~------~~~---------------------------~~~k~H~Ki~V 439 (687)
T 1xdp_A 408 E--------ANI-------HWAKRLTEAGVHVI------FSA---------------------------PGLKIHAKLFL 439 (687)
T ss_dssp T--------TTT-------TTTHHHHHHTCEEE------ECC---------------------------TTCEECCEEEE
T ss_pred h--------hHH-------HHHHHHHHCCCEEE------Eec---------------------------CCccccceEEE
Confidence 0 011 13678889999762 111 12359999999
Q ss_pred EeC----eE---EEecCcccccccCCCCCCcceEEEEecCCc
Q 009211 396 VDD----EY---VIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 396 VDD----~~---~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
||+ ++ ++|||+|+|.||+. .++|+++.+.++..
T Consensus 440 ID~re~~~i~~~a~iGS~N~d~rs~~--~n~D~~l~i~~~~i 479 (687)
T 1xdp_A 440 ISRKENGEVVRYAHIGTGNFNEKTAR--LYTDYSLLTADARI 479 (687)
T ss_dssp EEEEETTEEEEEEEEESSCSCTTGGG--TEEEEEEEECCHHH
T ss_pred EEeccCCeEEEEEEEeCCcCCcchhh--hcceEEEEEeCHHH
Confidence 994 54 99999999999998 45999999988754
No 9
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.09 E-value=3e-10 Score=121.95 Aligned_cols=128 Identities=21% Similarity=0.242 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009211 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.+++.+++++|++||++|||++.||.++. ++.+++.+|.+|+++++||+|+|+++.........++
T Consensus 36 ~~~~~~l~~~I~~A~~~I~i~~~~~~~d~--------------~g~~l~~aL~~aa~r~~GV~Vril~D~~~~~r~~~g~ 101 (458)
T 3hsi_A 36 AEFKTQIIELIRNAKKRIYVTALYWQKDE--------------AGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLGA 101 (458)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCBCSSH--------------HHHHHHHHHHHHHHHSTTCEEEEEEETTGGGSCCC--
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEEEecCc--------------HHHHHHHHHHHHHhcCCCCEEEEEEECcccccccccc
Confidence 46789999999999999999999998643 3578999999998876799999999974210000000
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHcC--CccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEE
Q 009211 318 VQEILFWQSQTMQMMYSVVAQELREMQ--VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 395 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~~G--v~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmI 395 (540)
.. + +. ...+++.|.++| +++.+. +|.+..+ ........|.|++|
T Consensus 102 ~~--~-~~-------~~~~~~~L~~~g~nv~v~~~----~f~~p~~--------------------~~~~~~r~H~Ki~v 147 (458)
T 3hsi_A 102 EK--S-AT-------NADWYCEQRQTYQLPDDPNM----FFGVPIN--------------------TREVFGVLHVKGFV 147 (458)
T ss_dssp ------CC-------HHHHHHHHHHHHTCTTCCCC----EEEECSS--------------------SSGGGCCEECCEEE
T ss_pred cc--c-cc-------cHHHHHHHHhhCCCceEeee----ecCCccc--------------------cccccCcceeeEEE
Confidence 00 0 00 112466777777 554200 2321000 01124689999999
Q ss_pred EeCeEEEecCcccccccCC
Q 009211 396 VDDEYVIMGSANINQRSMA 414 (540)
Q Consensus 396 VDD~~~~IGSANin~RSm~ 414 (540)
|||++++.| +||+++++.
T Consensus 148 iD~~v~~~G-~Ni~d~y~~ 165 (458)
T 3hsi_A 148 FDDTVLYSG-ASINNVYLH 165 (458)
T ss_dssp ETTEEEEES-CCBSTTTTT
T ss_pred ECCCEEEEe-eecCHHHhc
Confidence 999997777 999999986
No 10
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.03 E-value=6.2e-10 Score=121.10 Aligned_cols=138 Identities=12% Similarity=0.171 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeee-eccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCc
Q 009211 238 KSIQTAYIQAIRSAQHFIYIENQYF-LGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 316 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYF-i~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~ 316 (540)
.+++.+++++|++||++|||+..+| .... ++..+..+|.+|+++|++|+|+||++..+.+...
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~--------------~g~~i~~aL~~aa~rGp~V~Vril~D~~g~~~~~-- 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNGA--------------FQDAIVAGLKESAAKGNKLKVRILVGAAPVYHMN-- 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCHH--------------HHHHHHHHHHHHHHTTCCEEEEEEEECCC--CCC--
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCCh--------------HHHHHHHHHHHHHhCCCCcEEEEEEeCccccccc--
Confidence 5789999999999999999997653 3221 3567889999887644349999999975322110
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCcccccc--CCcccCCCcccccCCCCCcccccccccccceeeeEEE
Q 009211 317 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYC--LGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGM 394 (540)
Q Consensus 317 ~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlm 394 (540)
.. . ..+.+.|+++|+++.. ++.+.. +... .. .....|.|++
T Consensus 129 ~~-------~-------~~~~~~L~~~g~~~~~--~~~~~~~~~~~~--------------------~~-~~~r~H~K~~ 171 (506)
T 1v0w_A 129 VI-------P-------SKYRDELTAKLGKAAE--NITLNVASMTTS--------------------KT-AFSWNHSKIL 171 (506)
T ss_dssp CH-------H-------HHHHHHHHHHHGGGGG--GEEEEEEEECSB--------------------TT-TTBCBCCCEE
T ss_pred cC-------C-------HHHHHHHHhcccceee--cCcccccccccc--------------------CC-ccccceeeEE
Confidence 00 0 1235677777764321 222210 0000 00 1237999999
Q ss_pred EEeCeEEEecCccc-ccccCCCC-CCcceEEEEecC
Q 009211 395 IVDDEYVIMGSANI-NQRSMAGS-KDTEIAMGSYQP 428 (540)
Q Consensus 395 IVDD~~~~IGSANi-n~RSm~g~-~DsEi~v~i~d~ 428 (540)
|||++++++||+|| +++.+..+ .-.++.+.+..|
T Consensus 172 ViD~~~a~~Gg~Nl~~d~y~~~~~~~~D~~v~i~G~ 207 (506)
T 1v0w_A 172 VVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTGP 207 (506)
T ss_dssp EETTTEEEEESCCCCHHHHTSSSSCCBEEEEEEESH
T ss_pred EECCcEEEeeccccCccccccCCCCceEEEEEEECH
Confidence 99999999999999 66655311 115778887655
No 11
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.53 E-value=2.2e-07 Score=103.58 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhcc-----EEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCC
Q 009211 240 IQTAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPK 314 (540)
Q Consensus 240 I~~ayl~aI~~Ak~-----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~ 314 (540)
.+++++++|++|++ .|.|+ .|.++.. ..++.+|++|++ +|++|+||+....-.+.
T Consensus 353 sf~~vi~~I~~A~~DP~V~sIk~t-lYr~~~d----------------s~Iv~ALi~AA~--rGv~V~vLvel~arfde- 412 (705)
T 2o8r_A 353 TYDYVVRLLMEAAISPDVSEIRLT-QYRVAEN----------------SSIISALEAAAQ--SGKKVSVFVELKARFDE- 412 (705)
T ss_dssp CSHHHHHHHHHHHTCTTEEEEEEE-ESCCCSC----------------CHHHHHHHHHHH--TTCEEEEEECCCSCC---
T ss_pred hHHHHHHHHHHhccCCCceEEEEE-EEEEcCC----------------HHHHHHHHHHHH--CCCEEEEEEeCCCCcch-
Confidence 35789999999999 99976 4554321 258888998876 78999999995321110
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEE
Q 009211 315 TNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGM 394 (540)
Q Consensus 315 ~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlm 394 (540)
..+. .+.+.|.++|+++. |.+ ....+|+|++
T Consensus 413 e~ni----------------~wa~~Le~aGv~Vv-------~g~--------------------------~~lk~H~Ki~ 443 (705)
T 2o8r_A 413 ENNL----------------RLSERMRRSGIRIV-------YSM--------------------------PGLKVHAKTA 443 (705)
T ss_dssp --CH----------------HHHHHHHHHTCEEE-------ECC--------------------------TTCCBCCCEE
T ss_pred hhhH----------------HHHHHHHHCCCEEE-------Ecc--------------------------CCCCceeEEE
Confidence 0111 24688999999762 322 1457999999
Q ss_pred EEeCe---------EEEecCcccccccCCCCCCcceEEEEecCCc
Q 009211 395 IVDDE---------YVIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 395 IVDD~---------~~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
|||++ |+.+|+.|+|+.+.... +++++.+.+|..
T Consensus 444 lIdrr~~~~g~~~~y~~igtGN~n~~tariy--~D~~l~t~~~~i 486 (705)
T 2o8r_A 444 LILYHTPAGERPQGIALLSTGNFNETTARIY--SDTTLMTANTDI 486 (705)
T ss_dssp EEEECCCSSSCCCEEEEEESSCSSCCCSSCE--EEEEEEECCHHH
T ss_pred EEecccccCCceeEEEeccccceeeeEEEEE--eeeeeeecChHH
Confidence 99988 78899999999998744 889999877754
No 12
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=98.16 E-value=1.3e-06 Score=79.12 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=61.9
Q ss_pred CCCcEE-EEecCCCCCc---cchhhhc-----cccc---cccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCCc
Q 009211 14 HSSVNC-VLAPRYASSK---LSYFKQQ-----IVGT---IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 81 (540)
Q Consensus 14 ~~~V~~-~l~~~~~~~~---~~~~~~~-----~~~~---~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~H 81 (540)
.+||+| ++.+..++.. ..+++.+ .+.. ...+|.|++|||++ ++++|+.|++...+
T Consensus 51 ~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~~~~~~H~K~~iiD~~--------~~~iGS~N~~~~~~----- 117 (155)
T 1byr_A 51 KRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDSNFPIQHDKVIIVDNV--------TVETGSFNFTKAAE----- 117 (155)
T ss_dssp HTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEECSSSCCCCCEEEETTT--------EEEEESCCBSHHHH-----
T ss_pred HCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEcCCcccccceEEEECCC--------EEEEECCCCCcccc-----
Confidence 689999 8888665421 1233222 1111 24799999999998 99999999876211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCH--HHHHHHHHHHHHHHHhc
Q 009211 82 RLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKAT 138 (540)
Q Consensus 82 ~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gp--aa~dl~~~F~qrWn~a~ 138 (540)
..|++..+.+.|+ .+.++...|.+.|+.+.
T Consensus 118 ---------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 ---------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ---------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ---------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 2467899999993 89999999999998744
No 13
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=98.14 E-value=1.9e-06 Score=81.99 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=56.1
Q ss_pred CCCcEE-EEecCCCC-Cccchhhhc-----c---ccccccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCCccc
Q 009211 14 HSSVNC-VLAPRYAS-SKLSYFKQQ-----I---VGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 83 (540)
Q Consensus 14 ~~~V~~-~l~~~~~~-~~~~~~~~~-----~---~~~~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~H~l 83 (540)
.+||+| +++|.... ...+.+..+ . ......+|+|++|||++ ++|+||.|++...+.
T Consensus 83 ~rGV~Vrii~D~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~------ 148 (196)
T 4ggj_A 83 QRGVRVRVITDCDYMALNGSQIGLLRKAGIQVRHDQDLGYMHHKFAIVDKK--------VLITGSLNWTTQAIQ------ 148 (196)
T ss_dssp HTTCEEEEEESSCCC---CCHHHHHHHTTCEEEECCSSSCCCCEEEEETTT--------EEEEESCCBCHHHHH------
T ss_pred HcCCcEEEEEecccccccHHHHHHHHhcCCCcccccccccccCcEEEEcce--------EEEecCccCChhhhc------
Confidence 799999 77764222 222222221 1 12235689999999998 999999998763221
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcc
Q 009211 84 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 139 (540)
Q Consensus 84 ~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~ 139 (540)
..|-++.+.-.+++|..+.+.|.+.|+....
T Consensus 149 -------------------------~n~E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 149 -------------------------NNRENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp -------------------------HCCEEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred -------------------------ccceeEEEEECHHHHHHHHHHHHHHHHhCCC
Confidence 1233333333455799999999999997543
No 14
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=97.66 E-value=3.6e-05 Score=73.80 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=27.2
Q ss_pred CCeeEEEEEEeCHHHHHHHHHHHHHHHHhcc
Q 009211 109 EPWHDLHCRLDGPAAYDVLINFEQRWRKATK 139 (540)
Q Consensus 109 ~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~ 139 (540)
..|.|+.+...|++|..+.+.|.+.|+....
T Consensus 181 ~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~ 211 (220)
T 4gel_A 181 GNWENCIITADDKLTATFQAEFQRMWRAFAK 211 (220)
T ss_dssp TSBEEEEEECCHHHHHHHHHHHHHHHHHSEE
T ss_pred cCceEEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 3688999999999999999999999997544
No 15
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=96.20 E-value=0.0015 Score=67.13 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCC
Q 009211 237 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMW 308 (540)
Q Consensus 237 e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~ 308 (540)
...|.+.+.++|++|++.||+..++.. -..+...+.++++ +||+|++++|..
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~------------------l~~l~~~L~~a~~--RGV~Vrvi~~~~ 168 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEF------------------FETIREDLIKTLE--RGVTVSLYIDKI 168 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHH------------------HHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHH------------------HHHHHHHHHHHHh--CCCEEEEEECCC
Confidence 367899999999999999999764322 1234455555543 889999999864
No 16
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=90.12 E-value=0.88 Score=44.11 Aligned_cols=89 Identities=19% Similarity=0.135 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCC
Q 009211 285 LALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA 364 (540)
Q Consensus 285 la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~ 364 (540)
+...+.+.+. +|++|.+++-........ +- .+.++|...|++++ +++ +
T Consensus 53 fy~~f~~h~~--~Ggkv~~IlGgstsQrlT--SK----------------QavEElL~cGvev~------IiN---r--- 100 (358)
T 2c1l_A 53 FYETFTEHIN--QGGRVIAILGGSTSQRLS--SR----------------QVVEELLNRGVEVH------IIN---R--- 100 (358)
T ss_dssp THHHHHHHHH--TTCEEEEEEECCSSSCCB--BH----------------HHHHHHHHTTCEEE------EEE---C---
T ss_pred ecHHHHHHHh--cCCcEEEEEccccccccc--HH----------------HHHHHHHhcCCceE------Eee---e---
Confidence 3444444443 789999999853221111 11 13678889999753 221 1
Q ss_pred CcccccCCCCCcccccccccccceeeeEEEEE---eCeEEEecCcccccccCCCCCCcceEEEEecC
Q 009211 365 PKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 428 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV---DD~~~~IGSANin~RSm~g~~DsEi~v~i~d~ 428 (540)
.-.+|+|+-.. |...++|||.||..--|. .+-|++|.++++
T Consensus 101 ---------------------kRi~HaK~Yg~~~n~g~~LIV~SgNfT~pGms--QNvE~sllld~~ 144 (358)
T 2c1l_A 101 ---------------------KRILHAKLYGTSNNLGESLVVSSGNFTGPGMS--QNIEASLLLDNN 144 (358)
T ss_dssp ---------------------SSCBCCEEEEEEETTEEEEEEESCCBSTTTTT--TSBEEEEEECHH
T ss_pred ---------------------eeecchhhhcccCCCceEEEEecCCccccccc--cceeEEEEEcCC
Confidence 24689998776 678899999999999987 569999999765
No 17
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=70.38 E-value=7.6 Score=37.27 Aligned_cols=50 Identities=8% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecC
Q 009211 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 307 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~ 307 (540)
..|.+-..++|++|++.|++. ++ ++. -.++...|.+|.+ +||.|+|++..
T Consensus 9 e~Ii~r~~e~I~~A~~el~ls----i~-----~e~---------l~~l~~~L~~A~~--rGV~V~liv~~ 58 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVV----TP-----SEF---------FETIREDLIKTLE--RGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEE----EC-----GGG---------HHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhEEEEE----eC-----HHH---------HHHHHHHHHHHHH--CCCEEEEEEcC
Confidence 668888999999999999994 32 221 2467777777764 88999999985
No 18
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=51.94 E-value=7.9 Score=41.84 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=30.4
Q ss_pred cccceeeeEEEEE---------e---C----eEEEecCcccccccCCC----CCCcceEEEE
Q 009211 384 RFMIYVHAKGMIV---------D---D----EYVIMGSANINQRSMAG----SKDTEIAMGS 425 (540)
Q Consensus 384 ~~~iyvHSKlmIV---------D---D----~~~~IGSANin~RSm~g----~~DsEi~v~i 425 (540)
+....-|.|++|- | | .|+++|||||..-.+.- -+..||+|++
T Consensus 426 R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k~irnyElGVL~ 487 (544)
T 1q32_A 426 RGTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLY 487 (544)
T ss_dssp TTTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEE
T ss_pred CCCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhccccceEeEEEe
Confidence 4578889999873 2 1 48999999997544321 1569999999
No 19
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=37.61 E-value=22 Score=37.59 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=28.9
Q ss_pred ccceeeeEEEEEe--C----eEEEecCcccccccCCC---------CCCcceEEEEe
Q 009211 385 FMIYVHAKGMIVD--D----EYVIMGSANINQRSMAG---------SKDTEIAMGSY 426 (540)
Q Consensus 385 ~~iyvHSKlmIVD--D----~~~~IGSANin~RSm~g---------~~DsEi~v~i~ 426 (540)
....-|.|+.+-= | .|+++|||||..-.+.- -+..||+|++.
T Consensus 344 ~~a~pHiKty~r~~~~~~~~~W~lltSaNLSkaAWG~~~k~~~~l~I~nyElGVl~~ 400 (464)
T 1jy1_A 344 SNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFL 400 (464)
T ss_dssp TTSCBCCEEEEEECTTSSEEEEEEEESCCBSHHHHCEEETTTTEEEECSBEEEEEEC
T ss_pred CCcCCceeeEEecCCCCCeecEEEEccccCCHHHhCccccCCCceeEeeeeeeEEEe
Confidence 3566799987752 2 48999999996543210 04689999984
No 20
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=30.11 E-value=20 Score=37.87 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.1
Q ss_pred ceeeeEEEEE---eCeEEEecCcccccccCC
Q 009211 387 IYVHAKGMIV---DDEYVIMGSANINQRSMA 414 (540)
Q Consensus 387 iyvHSKlmIV---DD~~~~IGSANin~RSm~ 414 (540)
.--|||+||. |+-.++|-||||...=+.
T Consensus 116 GthHsKmmiL~y~~glRVVI~TANL~~~DW~ 146 (464)
T 1jy1_A 116 GTHHTKMMLLLYEEGLRVVIHTSNLIHADWH 146 (464)
T ss_dssp CCBCCCEEEEEESSCEEEEEECCCBSGGGGT
T ss_pred cccchhhheeecCCceEEEEeCCCCChhHhc
Confidence 5789999998 789999999999876663
No 21
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=29.13 E-value=39 Score=20.07 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhh-hhhhhh
Q 009211 469 DCIRKVNQIAGEN-WGRFTA 487 (540)
Q Consensus 469 ~~~~~~~~~a~~n-w~~~~~ 487 (540)
.|.+++++.|.+| |..|+.
T Consensus 3 ~~te~lrr~arrnawdly~e 22 (25)
T 3ech_C 3 DYTEQLRRAARRNAWDLYGE 22 (26)
T ss_dssp CHHHHHHHHHHHTHHHHHHS
T ss_pred cHHHHHHHHHHHhHHHHHHH
Confidence 4778899999987 887754
No 22
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=28.32 E-value=23 Score=37.57 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.0
Q ss_pred cceeeeEEEEE---eC-eEEEecCcccc
Q 009211 386 MIYVHAKGMIV---DD-EYVIMGSANIN 409 (540)
Q Consensus 386 ~iyvHSKlmIV---DD-~~~~IGSANin 409 (540)
..--|||+||. || ..++|-||||.
T Consensus 101 fGthHsKmmlL~y~dg~~RVvI~TANl~ 128 (470)
T 3sq7_A 101 FASHHTKLIINFYDNGECKIFLPSNNFT 128 (470)
T ss_dssp TCCBCCCEEEEEETTSEEEEEEESSCBS
T ss_pred cCCccceeEEEEecCCCEEEEEecCCCC
Confidence 35789999996 66 67999999994
Done!