AmiGO: BLAST Results


BLAST match view associations BLAST with AT3G06980 AT3G06980 AT3G06980	protein from Arabidopsis thaliana	9.4e-122
BLAST match view associations BLAST with LOC_Os03g01830 LOC_Os03g01830 LOC_Os03g01830 DEAD-box ATP-dependent RNA helicase 50	protein from Oryza sativa Japonica Group	1.1e-112
BLAST match view associations BLAST with RH39 RH39 RH39 AT4G09730	protein from Arabidopsis thaliana	2.4e-32
BLAST match view associations BLAST with CPS_2658 CPS_2658 CPS_2658 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	8.1e-28
BLAST match view associations BLAST with VC1407 VC1407 VC1407 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	6.4e-27
BLAST match view associations BLAST with VC_1407 VC_1407 VC_1407 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	6.4e-27
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	9.9e-27
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	9.9e-27
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	5.6e-25
BLAST match view associations BLAST with ddx28 ddx28 ddx28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	gene_product from Danio rerio	1.5e-24
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-24
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 helicase, truncated, putative	gene from Plasmodium falciparum	1.8e-23
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 Helicase, putative	protein from Plasmodium falciparum 3D7	1.8e-23
BLAST match view associations BLAST with SPO_1443 SPO_1443 SPO_1443 ATP-dependent RNA helicase RhlE	protein from Ruegeria pomeroyi DSS-3	3.8e-23
BLAST match view associations BLAST with RH20 RH20 RH20 RNA helicase 20	protein from Arabidopsis thaliana	5.3e-23
BLAST match view associations BLAST with STRS1 STRS1 STRS1 STRESS RESPONSE SUPPRESSOR 1	protein from Arabidopsis thaliana	5.5e-23
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Gallus gallus	6.7e-23
BLAST match view associations BLAST with DDX28 DDX28 DDX28 Uncharacterized protein	protein from Canis lupus familiaris	8.7e-23
BLAST match view associations BLAST with DBP10 DBP10 DBP10 Putative ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	1.4e-22
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.5e-22
BLAST match view associations BLAST with DET_0183 DET_0183 DET_0183 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Dehalococcoides ethenogenes 195	3.1e-22
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD box family	protein from Vibrio cholerae O1 biovar El Tor str. N16961	3.5e-22
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Vibrio cholerae O1 biovar El Tor	3.5e-22
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	3.6e-22
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	4.1e-22
BLAST match view associations BLAST with CPS_3401 CPS_3401 CPS_3401 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	4.3e-22
BLAST match view associations BLAST with si:dkey-156n14.5 si:dkey-156n14.5 si:dkey-156n14.5	gene_product from Danio rerio	5.1e-22
BLAST match view associations BLAST with Ddx28 Ddx28 Ddx28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	gene from Rattus norvegicus	6.0e-22
BLAST match view associations BLAST with DDX54 DDX54 DDX54 ATP-dependent RNA helicase DDX54	protein from Homo sapiens	6.1e-22
BLAST match view associations BLAST with ddx4 ddx4 ddx4 Probable ATP-dependent RNA helicase DDX4	protein from Pelophylax lessonae	7.8e-22
BLAST match view associations BLAST with Ddx28 Ddx28 Ddx28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein from Mus musculus	1.0e-21
BLAST match view associations BLAST with DBP2 DBP2 DBP2 ATP-dependent RNA helicase DBP2	protein from Magnaporthe oryzae 70-15	1.1e-21
BLAST match view associations BLAST with PRP5 PRP5 PRP5 RNA helicase in the DEAD-box family	gene from Saccharomyces cerevisiae	1.1e-21
BLAST match view associations BLAST with DBP2 DBP2 DBP2	gene_product from Candida albicans	1.2e-21
BLAST match view associations BLAST with AT2G47330 AT2G47330 AT2G47330	protein from Arabidopsis thaliana	1.3e-21
BLAST match view associations BLAST with PRP5 PRP5 PRP5	gene_product from Candida albicans	1.5e-21
BLAST match view associations BLAST with PRP5 PRP5 PRP5 Pre-mRNA-processing ATP-dependent RNA helicase PRP5	protein from Candida albicans SC5314	1.5e-21
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	1.8e-21
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	protein from Plasmodium falciparum 3D7	1.8e-21
BLAST match view associations BLAST with olvas olvas olvas VASA	protein from Oryzias latipes	1.9e-21
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	2.8e-21
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	2.8e-21
BLAST match view associations BLAST with Y54G11A.3 Y54G11A.3 Y54G11A.3	gene from Caenorhabditis elegans	3.0e-21
BLAST match view associations BLAST with ddx5 ddx5 ddx5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	gene_product from Danio rerio	3.3e-21
BLAST match view associations BLAST with vasa vasa vasa vasa homolog	gene_product from Danio rerio	3.6e-21
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Gallus gallus	3.9e-21
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Gallus gallus	4.0e-21
BLAST match view associations BLAST with PFL1310c PFL1310c PFL1310c ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	4.1e-21
BLAST match view associations BLAST with PSPPH_0449 PSPPH_0449 PSPPH_0449 ATP-dependent RNA helicase RhlE, putative	protein from Pseudomonas syringae pv. phaseolicola 1448A	4.4e-21
BLAST match view associations BLAST with CG10077 CG10077 CG10077	protein from Drosophila melanogaster	4.7e-21
BLAST match view associations BLAST with srmB srmB srmB SrmB, DEAD-box RNA helicase	protein from Escherichia coli K-12	4.7e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 DDX17 protein	protein from Bos taurus	4.8e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	4.8e-21
BLAST match view associations BLAST with Ddx17 Ddx17 Ddx17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein from Mus musculus	4.8e-21
BLAST match view associations BLAST with DDB_G0281925 DDB_G0281925 DDB_G0281925 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	4.8e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	4.9e-21
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	5.2e-21
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	5.2e-21
BLAST match view associations BLAST with Ddx41 Ddx41 Ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	gene from Rattus norvegicus	5.7e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	6.2e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	6.2e-21
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Probable ATP-dependent RNA helicase DDX43	protein from Homo sapiens	6.2e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	6.3e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Sus scrofa	6.3e-21
BLAST match view associations BLAST with Ddx41 Ddx41 Ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein from Mus musculus	7.3e-21
BLAST match view associations BLAST with AT5G65900 AT5G65900 AT5G65900	protein from Arabidopsis thaliana	7.6e-21
BLAST match view associations BLAST with HNE_0695 HNE_0695 HNE_0695 Putative ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	1.4e-20
BLAST match view associations BLAST with GSU_0914 GSU_0914 GSU_0914 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	1.9e-20
BLAST match view associations BLAST with rhlE_2 rhlE_2 rhlE_2 Putative ATP-dependent RNA helicase	protein from Pseudomonas protegens Pf-5	2.1e-20
BLAST match view associations BLAST with sacy-1 sacy-1 sacy-1	gene from Caenorhabditis elegans	2.1e-20
BLAST match view associations BLAST with DDX28 DDX28 DDX28 Probable ATP-dependent RNA helicase DDX28	protein from Homo sapiens	2.3e-20
BLAST match view associations BLAST with DED1 DED1 DED1 ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase	gene from Saccharomyces cerevisiae	2.5e-20
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	2.8e-20
BLAST match view associations BLAST with AT5G63120 AT5G63120 AT5G63120	protein from Arabidopsis thaliana	3.0e-20
BLAST match view associations BLAST with DBP2 DBP2 DBP2 ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	3.2e-20
BLAST match view associations BLAST with AT3G02065 AT3G02065 AT3G02065	protein from Arabidopsis thaliana	3.2e-20
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 Putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	3.3e-20
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	3.3e-20
BLAST match view associations BLAST with GSU_0491 GSU_0491 GSU_0491 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	3.4e-20
BLAST match view associations BLAST with CPS_1418 CPS_1418 CPS_1418 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	3.7e-20
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Sus scrofa	3.9e-20
BLAST match view associations BLAST with SO_2571 SO_2571 SO_2571 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	4.3e-20
BLAST match view associations BLAST with SO_2571 SO_2571 SO_2571 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	4.3e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Uncharacterized protein	protein from Bos taurus	4.5e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Uncharacterized protein	protein from Canis lupus familiaris	4.5e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Probable ATP-dependent RNA helicase DDX41	protein from Homo sapiens	4.5e-20
BLAST match view associations BLAST with LOC100524536 LOC100524536 LOC100524536 Uncharacterized protein	protein from Sus scrofa	4.7e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Probable ATP-dependent RNA helicase DDX41	protein from Homo sapiens	4.8e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Uncharacterized protein	protein from Canis lupus familiaris	4.9e-20
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	5.3e-20
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Canis lupus familiaris	5.6e-20
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Gallus gallus	5.8e-20
BLAST match view associations BLAST with Ddx50 Ddx50 Ddx50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein from Mus musculus	6.4e-20
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Canis lupus familiaris	6.5e-20
BLAST match view associations BLAST with DBP1 DBP1 DBP1 Putative ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	7.3e-20
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	7.6e-20
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  009212
        (540 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2077592 - symbol:AT3G06980 species:3702 "Arabi...  1152  9.4e-122  2
UNIPROTKB|Q0DVX2 - symbol:LOC_Os03g01830 "DEAD-box ATP-de...  1112  1.1e-112  1
TAIR|locus:2118509 - symbol:RH39 "RH39" species:3702 "Ara...   352  2.4e-32   2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he...   315  8.1e-28   1
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic...   307  6.4e-27   1
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli...   307  6.4e-27   1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas...   308  9.9e-27   1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he...   308  9.9e-27   1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he...   305  5.6e-25   1
ZFIN|ZDB-GENE-061013-64 - symbol:ddx28 "DEAD (Asp-Glu-Ala...   305  1.5e-24   1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli...   298  8.5e-24   1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase...   295  1.8e-23   1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ...   295  1.8e-23   1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he...   290  3.8e-23   1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie...   290  5.3e-23   1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE...   291  5.5e-23   1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"...   289  6.7e-23   1
UNIPROTKB|E2RKU0 - symbol:DDX28 "Uncharacterized protein"...   289  8.7e-23   1
SGD|S000002189 - symbol:DBP10 "Putative ATP-dependent RNA...   293  1.4e-22   1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli...   289  2.5e-22   1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he...   285  3.1e-22   1
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel...   279  3.5e-22   1
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he...   279  3.5e-22   1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas...   281  3.6e-22   1
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas...   281  4.1e-22   1
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he...   279  4.3e-22   1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke...   285  5.1e-22   1
RGD|1311976 - symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box po...   282  6.0e-22   1
UNIPROTKB|F8VRX4 - symbol:DDX54 "ATP-dependent RNA helica...   262  6.1e-22   1
UNIPROTKB|Q3MSQ8 - symbol:ddx4 "Probable ATP-dependent RN...   284  7.8e-22   1
MGI|MGI:1919236 - symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) bo...   280  1.0e-21   1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas...   280  1.1e-21   1
SGD|S000000441 - symbol:PRP5 "RNA helicase in the DEAD-bo...   284  1.1e-21   1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica...   280  1.2e-21   1
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi...   288  1.3e-21   2
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica...   283  1.5e-21   1
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d...   283  1.5e-21   1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ...   279  1.8e-21   1
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep...   279  1.8e-21   1
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz...   279  1.9e-21   1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli...   272  2.8e-21   1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli...   272  2.8e-21   1
WB|WBGene00013214 - symbol:Y54G11A.3 species:6239 "Caenor...   275  3.0e-21   1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala...   277  3.3e-21   1
ZFIN|ZDB-GENE-990415-272 - symbol:vasa "vasa homolog" spe...   278  3.6e-21   1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ...   276  3.9e-21   1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ...   276  4.0e-21   1
GENEDB_PFALCIPARUM|PFL1310c - symbol:PFL1310c "ATP-depend...   210  4.1e-21   2
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h...   276  4.4e-21   1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ...   278  4.7e-21   1
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica...   271  4.7e-21   1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"...   276  4.8e-21   1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"...   276  4.8e-21   1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo...   276  4.8e-21   1
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b...   275  4.8e-21   1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R...   276  4.9e-21   1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel...   271  5.2e-21   1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he...   271  5.2e-21   1
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po...   275  5.7e-21   1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R...   276  6.2e-21   1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R...   276  6.2e-21   1
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R...   275  6.2e-21   1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"...   276  6.3e-21   1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"...   276  6.3e-21   1
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo...   274  7.3e-21   1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi...   274  7.6e-21   1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer...   271  1.2e-20   1
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen...   270  1.4e-20   1
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu...   271  1.6e-20   1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he...   266  1.9e-20   1
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ...   270  2.1e-20   1
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab...   270  2.1e-20   1
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he...   272  2.3e-20   1
UNIPROTKB|Q9NUL7 - symbol:DDX28 "Probable ATP-dependent R...   268  2.3e-20   1
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu...   269  2.5e-20   1
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"...   262  2.8e-20   1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi...   268  3.0e-20   1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ...   267  3.2e-20   1
TAIR|locus:2828586 - symbol:AT3G02065 species:3702 "Arabi...   266  3.2e-20   1
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen...   264  3.3e-20   1
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende...   264  3.3e-20   1
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he...   264  3.4e-20   1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he...   261  3.7e-20   1
UNIPROTKB|F1SUG8 - symbol:DDX50 "Uncharacterized protein"...   269  3.9e-20   1
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli...   264  4.3e-20   1
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli...   264  4.3e-20   1
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"...   267  4.5e-20   1
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"...   267  4.5e-20   1
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R...   267  4.5e-20   1
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p...   268  4.7e-20   2
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R...   267  4.8e-20   1
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"...   267  4.9e-20   1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli...   266  5.3e-20   1
UNIPROTKB|E2RPT4 - symbol:DDX50 "Uncharacterized protein"...   267  5.6e-20   1
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"...   262  5.8e-20   1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli...   267  6.4e-20   2
MGI|MGI:2182303 - symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) bo...   267  6.4e-20   1
UNIPROTKB|E2QTT0 - symbol:DDX50 "Uncharacterized protein"...   267  6.5e-20   1
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ...   265  7.3e-20   1
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"...   262  7.6e-20   1

WARNING:  Descriptions of 736 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2077592 [details] [associations]
            symbol:AT3G06980 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0006364 "rRNA processing"
            evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
            [GO:0006655 "phosphatidylglycerol biosynthetic process"
            evidence=RCA] [GO:0009658 "chloroplast organization" evidence=RCA]
            [GO:0009793 "embryo development ending in seed dormancy"
            evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006968
            GO:GO:0003723 EMBL:AC016827 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K13179 EMBL:AJ296275 EMBL:AY048260 EMBL:AY113064
            EMBL:BT002520 IPI:IPI00545954 RefSeq:NP_187354.1 UniGene:At.18753
            ProteinModelPortal:Q8GUG7 SMR:Q8GUG7 IntAct:Q8GUG7 STRING:Q8GUG7
            PaxDb:Q8GUG7 PRIDE:Q8GUG7 EnsemblPlants:AT3G06980.1 GeneID:819883
            KEGG:ath:AT3G06980 KEGG:dosa:Os03t0108600-01 GeneFarm:1029
            TAIR:At3g06980 HOGENOM:HOG000078675 InParanoid:Q8GUG7 OMA:ANCRSIS
            PhylomeDB:Q8GUG7 ProtClustDB:CLSN2915517 Genevestigator:Q8GUG7
            GermOnline:AT3G06980 Uniprot:Q8GUG7
        Length = 781

 Score = 1152 (410.6 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
 Identities = 224/321 (69%), Positives = 269/321 (83%)

Query:   220 RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKY--SADGDFFSRKSFKELGCSD 277
             R   H K      RGW    S+  +     D  ++R+K   + +  FFSRK+F E+GCS+
Sbjct:   326 RGGSHSKGSDTNSRGWGDRRSV--VYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSE 383

Query:   278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
              M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+PVIQRLR+EELQG
Sbjct:   384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443

Query:   338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
              SKS+ G PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL++GV
Sbjct:   444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503

Query:   398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457
             DVLIATPGRF +L+ EGIL L NLRCAILDEVDILF D++FE ALQ+LI+SSPVTAQYLF
Sbjct:   504 DVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLF 563

Query:   458 VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517
             VTATLP+EIYNKLVEVFPDC+VVMGP +HR+S  LEEFLVDCSGD  ++KTPETAF NKK
Sbjct:   564 VTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKK 623

Query:   518 SALLQLIEKSPVSKTIVFCNK 538
             +ALLQ++E++PVSKTI+FCNK
Sbjct:   624 TALLQIMEENPVSKTIIFCNK 644

 Score = 66 (28.3 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
 Identities = 13/21 (61%), Positives = 18/21 (85%)

Query:   145 KGVISSFSRLKAQRVKAVVDK 165
             +G+ +SF RLKAQ+VKA+V K
Sbjct:    98 RGLTASFGRLKAQKVKALVGK 118


>UNIPROTKB|Q0DVX2 [details] [associations]
            symbol:LOC_Os03g01830 "DEAD-box ATP-dependent RNA helicase
            50" species:39947 "Oryza sativa Japonica Group" [GO:0003724 "RNA
            helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0006968 "cellular defense
            response" evidence=IDA] [GO:0009817 "defense response to fungus,
            incompatible interaction" evidence=IDA] [GO:0071369 "cellular
            response to ethylene stimulus" evidence=IEP] [GO:0071395 "cellular
            response to jasmonic acid stimulus" evidence=IEP] [GO:0071446
            "cellular response to salicylic acid stimulus" evidence=IEP]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009507 GO:GO:0071395 GO:GO:0006968 EMBL:DP000009
            EMBL:AP008209 GO:GO:0009817 GO:GO:0003723 EMBL:AC113930
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000140
            GO:GO:0071369 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K13179 GO:GO:0071446 HOGENOM:HOG000078675
            EMBL:AK065776 RefSeq:NP_001048702.1 UniGene:Os.43898
            ProteinModelPortal:Q0DVX2 STRING:Q0DVX2
            EnsemblPlants:LOC_Os03g01830.1 GeneID:4331339 KEGG:osa:4331339
            Gramene:Q0DVX2 OMA:PSHIQAM ProtClustDB:CLSN2684806 Uniprot:Q0DVX2
        Length = 641

 Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
 Identities = 243/482 (50%), Positives = 317/482 (65%)

Query:    71 YSRTPLETAGACELIDNDTGEKVIVWGGTXXXXXXXXXXXXXXXXXSSNWNKDPSQPTTS 130
             Y R P++T GA  L+D  TG  VIVWGGT                  S   + P +P   
Sbjct:    54 YERVPMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAVL-------STTTRVPDRP--- 103

Query:   131 APVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSL 190
                 + N  S       I +F RLKAQ+VK V+ +RSA  K+  +      R S++ PS 
Sbjct:   104 ----KENGRSTS-----IGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSD 152

Query:   191 E--------------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWR 236
             E              N R+      D    A S++  +  Y    +  +  G++   G +
Sbjct:   153 ESDEDGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRGADDL-DFPGSEATSGSK 211

Query:   237 SGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQA 296
               G+I ++ +   +   QR K   D  FFSR+SFKE+GCSD ++ +L+   F RPS IQA
Sbjct:   212 RWGNISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQA 268

Query:   297 MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356
             MA+ PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+  +PRVV+L PTAE
Sbjct:   269 MAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAE 328

Query:   357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL 416
             LASQVL+NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +
Sbjct:   329 LASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFV 388

Query:   417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD 476
             QL NLRC +LDEVDIL+ +E FE  L  LI+ +P+T QYLFVTATLP++IYNK+VE FPD
Sbjct:   389 QLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPD 448

Query:   477 CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFC 536
             C+++MGPG+HR S  LEE LVDCSGD   +K PETAF NKKSAL+++IE+SPV KTI+FC
Sbjct:   449 CELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFC 508

Query:   537 NK 538
             NK
Sbjct:   509 NK 510


>TAIR|locus:2118509 [details] [associations]
            symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
            binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
            bisphosphate carboxylase complex biogenesis" evidence=IMP]
            [GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
            "rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
            process" evidence=RCA] [GO:0009658 "chloroplast organization"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
            GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
            EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
            PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
            ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
            EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
            KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
            HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
            ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
            GO:GO:1901259 Uniprot:Q56X76
        Length = 621

 Score = 352 (129.0 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
 Identities = 94/281 (33%), Positives = 156/281 (55%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             ++F+ELG S+ ++ +L+  N   P++IQ +  P V+E KS +L   +GSGKTLAYLLP++
Sbjct:   112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             Q +R++E     K+    PR V+L PT EL+ QV    +S+S     FRS++V+GG R +
Sbjct:   172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH-HARFRSILVSGGSRIR 230

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF--EVAL--- 442
              Q ++L   +D+++ TPGR +  I+EG +   ++   +LDE D +F D  F  E+     
Sbjct:   231 PQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMF-DRGFGPEIRKFLA 289

Query:   443 ---QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR-ISPGLEEFLVD 498
                Q  + ++    Q + VTAT+ + +   + E F   + +    +H+ I+    +F + 
Sbjct:   290 PLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDF-IK 348

Query:   499 CSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
              SG ++           K  ALLQ++E S    SK +VFCN
Sbjct:   349 LSGGED-----------KLEALLQVLEPSLAKGSKVMVFCN 378

 Score = 59 (25.8 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query:   128 TTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTT 187
             TTS+P    N       K  I    RL+ + +K    K       +V  +++E  + K +
Sbjct:    50 TTSSPTTETNVTDPDQLKHTIL-LERLRLRHLKESA-KPPQQRPSSVVGVEEESSIRKKS 107

Query:   188 PSL-ENFRELG 197
               L ENF+ELG
Sbjct:   108 KKLVENFQELG 118


>TIGR_CMR|CPS_2658 [details] [associations]
            symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
            ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
            PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
            Uniprot:Q480Z7
        Length = 399

 Score = 315 (115.9 bits), Expect = 8.1e-28, P = 8.1e-28
 Identities = 83/272 (30%), Positives = 142/272 (52%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             FK     + +I+ +  + + +P+ IQ    P ++ G   +   Q+G+GKT A+ LP+I +
Sbjct:     4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
               + ++   +KST    R +IL PT ELASQ++ N    S  G+  ++ VV GG  ++ Q
Sbjct:    64 FGRNKIDIKAKST----RSLILTPTRELASQIMQNIDDYSD-GLGLKTKVVYGGVGRQAQ 118

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             +++++ G+D+L+ATPGR + LI+ G +    L   +LDE D +  D  F   +QS+IS  
Sbjct:   119 VDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTML-DMGFFKDVQSIISKL 177

Query:   450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ--ESDK 507
             P + Q L  +AT+P EI     E+  +  ++  P   +I+   E   +D         DK
Sbjct:   178 PKSRQTLLFSATMPAEI-----EILAEA-ILTDPTKIQITA--ETVTIDLVNQSVYHLDK 229

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             +      NK   L  ++ K+   K ++FC  K
Sbjct:   230 S------NKVPLLFNILTKADYEKVLIFCKTK 255


>UNIPROTKB|Q9KS53 [details] [associations]
            symbol:VC1407 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 307 (113.1 bits), Expect = 6.4e-27, P = 6.4e-27
 Identities = 67/194 (34%), Positives = 110/194 (56%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF +LG SD +++++ +  + +P+ IQ  A P +++G+  I A Q+G+GKT +++LP+++
Sbjct:     2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             +LRQ + Q   +      R +IL PT ELA QV        K     +S+ V GG  ++ 
Sbjct:    62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q + L +GVDVL+ATPGR M L  +  +    +   +LDE D +  D  F  ++  +I  
Sbjct:   116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174

Query:   449 SPVTAQYLFVTATL 462
              P   Q+L  +ATL
Sbjct:   175 LPSEVQFLLFSATL 188


>TIGR_CMR|VC_1407 [details] [associations]
            symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 307 (113.1 bits), Expect = 6.4e-27, P = 6.4e-27
 Identities = 67/194 (34%), Positives = 110/194 (56%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF +LG SD +++++ +  + +P+ IQ  A P +++G+  I A Q+G+GKT +++LP+++
Sbjct:     2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             +LRQ + Q   +      R +IL PT ELA QV        K     +S+ V GG  ++ 
Sbjct:    62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q + L +GVDVL+ATPGR M L  +  +    +   +LDE D +  D  F  ++  +I  
Sbjct:   116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174

Query:   449 SPVTAQYLFVTATL 462
              P   Q+L  +ATL
Sbjct:   175 LPSEVQFLLFSATL 188


>UNIPROTKB|Q83DM8 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
            KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
            BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
        Length = 420

 Score = 308 (113.5 bits), Expect = 9.9e-27, P = 9.9e-27
 Identities = 68/198 (34%), Positives = 113/198 (57%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF+ LG S  ++ +++ Q ++ P+ +Q  A P +++ +  ++  Q+G+GKT  + LP++Q
Sbjct:    11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             RL       L +S     R +IL PT ELA QV    R+  K  +P ++ VV GG   K 
Sbjct:    71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 128

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GVD+L+ATPGR + L+ +G+L L  +   +LDE D +  D  F   ++ ++  
Sbjct:   129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRML-DMGFLPDIRRILKL 187

Query:   449 SPVTAQYLFVTATLPVEI 466
              P + Q L  +AT   EI
Sbjct:   188 LPESRQNLLFSATFSKEI 205


>TIGR_CMR|CBU_0670 [details] [associations]
            symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
            putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
            GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
            ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
            Uniprot:Q83DM8
        Length = 420

 Score = 308 (113.5 bits), Expect = 9.9e-27, P = 9.9e-27
 Identities = 68/198 (34%), Positives = 113/198 (57%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF+ LG S  ++ +++ Q ++ P+ +Q  A P +++ +  ++  Q+G+GKT  + LP++Q
Sbjct:    11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             RL       L +S     R +IL PT ELA QV    R+  K  +P ++ VV GG   K 
Sbjct:    71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 128

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GVD+L+ATPGR + L+ +G+L L  +   +LDE D +  D  F   ++ ++  
Sbjct:   129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRML-DMGFLPDIRRILKL 187

Query:   449 SPVTAQYLFVTATLPVEI 466
              P + Q L  +AT   EI
Sbjct:   188 LPESRQNLLFSATFSKEI 205


>TIGR_CMR|CPS_1125 [details] [associations]
            symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
            ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
            KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
            BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
        Length = 466

 Score = 305 (112.4 bits), Expect = 5.6e-25, P = 5.6e-25
 Identities = 72/197 (36%), Positives = 115/197 (58%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F +LG S+ ++++++ + +  PS IQA A P V+ G+  + A Q+G+GKT  + LP++QR
Sbjct:     8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L   +  G +K +S + R +IL PT ELA+Q+  +     K  +   SMVV GG +   Q
Sbjct:    68 LSSSK--G-NKVSSNNVRALILTPTRELAAQISESIEVYGKY-LNLHSMVVFGGVKINPQ 123

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             +  L++GVDVL+ATPGR + L  +  ++   L   ILDE D +  D  F   ++ L+++ 
Sbjct:   124 IARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRML-DMGFIRDIKKLMTAL 182

Query:   450 PVTAQYLFVTATLPVEI 466
             P   Q L  +AT   EI
Sbjct:   183 PKDRQNLLFSATFSPEI 199


>ZFIN|ZDB-GENE-061013-64 [details] [associations]
            symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
            HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
            EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
            UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
            KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
            ArrayExpress:Q08BL1 Uniprot:Q08BL1
        Length = 558

 Score = 305 (112.4 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 97/331 (29%), Positives = 165/331 (49%)

Query:   233 RGWRSG---G---SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ 286
             +GW+S    G   SI+++Q  P   PK + +   DG   S+K+F        ++E+L+RQ
Sbjct:   111 KGWKSNRALGDYFSINSIQSAPPFVPKHKDE-GDDGASASKKTFHCFNLCPELVETLQRQ 169

Query:   287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346
             N + P+ +Q    P +++G++ + A ++GSGKTL YLLP+I RL+++ L G  +S     
Sbjct:   170 NIIHPTTVQLQTIPKILKGRNILCAAETGSGKTLTYLLPIIHRLQEDLLAGSERSI---- 225

Query:   347 RVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKTQLENLQEGV-DVLIATP 404
             R V++ P+ ELA QV S  RS+S + G+  +  VV GG    T       G  D+L++TP
Sbjct:   226 RAVVIVPSRELAEQVNSVARSVSERFGLVVK--VVGGGRGVGTIKAAFARGQPDILVSTP 283

Query:   405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT------------ 452
             G  +  + +  + L  L   ++DE D +F D+ F   L+ ++S + V             
Sbjct:   284 GALLKALWKRFISLSELYFLVIDEADTMF-DDSFAGMLEKILSHTQVASRLSETIGLARK 342

Query:   453 AQYLFVTATLPV---EIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
             AQ + V AT P    ++ +K  ++      V    +H + P +++  +   G   +DK  
Sbjct:   343 AQLVVVGATFPGGVGDVLSKATDL-ASISTVKSRMLHHLMPHIKQTFLRVKG---ADK-- 396

Query:   510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
                 L    AL +  ++      +VFCN  S
Sbjct:   397 ---ILELHQALKRAEQEQ--KGVLVFCNSAS 422


>TIGR_CMR|SO_3783 [details] [associations]
            symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
            KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
            Uniprot:Q8EAV8
        Length = 535

 Score = 298 (110.0 bits), Expect = 8.5e-24, P = 8.5e-24
 Identities = 72/198 (36%), Positives = 110/198 (55%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF  LG S  + +++  Q +  PS IQA A P V+ GK  + A Q+G+GKT  + LP+++
Sbjct:     2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              L +       K+ SG  R ++L PT ELA+QV  +  +  K  +P RS VV GG     
Sbjct:    62 LLAKGH-----KAKSGQTRALVLTPTRELAAQVGESVETYGKY-LPLRSAVVFGGVPINP 115

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+  L+ GVDVL+ATPGR + L+++  ++   L   +LDE D +  D  F   ++ +++ 
Sbjct:   116 QINKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRML-DMGFIRDIKKILAL 174

Query:   449 SPVTAQYLFVTATLPVEI 466
              P   Q L  +AT   EI
Sbjct:   175 LPAKRQNLMFSATFSDEI 192

 Score = 197 (74.4 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 62/202 (30%), Positives = 105/202 (51%)

Query:   340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDV 399
             K+ SG  R ++L PT ELA+QV  +  +  K  +P RS VV GG     Q+  L+ GVDV
Sbjct:    68 KAKSGQTRALVLTPTRELAAQVGESVETYGKY-LPLRSAVVFGGVPINPQINKLRHGVDV 126

Query:   400 LIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459
             L+ATPGR + L+++  ++   L   +LDE D +  D  F   ++ +++  P   Q L  +
Sbjct:   127 LVATPGRLLDLVQQNAVKFNQLEILVLDEADRML-DMGFIRDIKKILALLPAKRQNLMFS 185

Query:   460 ATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517
             AT   EI  +L +  V    ++ + P  +  +  +++++  C      DKT ++A L   
Sbjct:   186 ATFSDEI-RELAKGLVNHPVEISVTP-RNAAATTVKQWI--CP----VDKTQKSALL--- 234

Query:   518 SALLQLIEKSPVSKTIVFCNKK 539
                +QLI++    + +VF   K
Sbjct:   235 ---IQLIKQENWQQVLVFSRTK 253


>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
            symbol:PF14_0437 "helicase, truncated,
            putative" species:5833 "Plasmodium falciparum" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
            MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
            GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
            HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
        Length = 527

 Score = 295 (108.9 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 85/270 (31%), Positives = 136/270 (50%)

Query:   214 ISDYNSRSNKHEKSGTKIDRGWRSGGSI---HNLQYEPTDCPK----------QRHKYSA 260
             + +YN+ SN + K+   ID  W++   +    N   E  D  K           +HK + 
Sbjct:    45 VPNYNNNSNNYGKNLAPID--WKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITI 102

Query:   261 -DGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
              +G+   +   S  ++G  DY+I+SLK  N + P+ IQ   +P  + GK  I   ++GSG
Sbjct:   103 LEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSG 162

Query:   318 KTLAYLLPV-IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
             KTLA++LP  +  L Q  L    K   G P V++LAPT ELA Q+   C   S      R
Sbjct:   163 KTLAFILPAFVHILAQPNL----KYGDG-PIVLVLAPTRELAEQIRQECIKFSTES-KIR 216

Query:   377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
             +    GG  +  Q+  L++GV +LIA PGR + L+++ +  L+ +   +LDE D +  D 
Sbjct:   217 NTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKML-DM 275

Query:   437 DFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              FE+ ++ ++       Q L  +AT P E+
Sbjct:   276 GFELQIRKIVDQIRPDRQTLMWSATWPKEV 305


>UNIPROTKB|Q8IL13 [details] [associations]
            symbol:PF14_0437 "Helicase, putative" species:36329
            "Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
            ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
            PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
            KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
            HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
        Length = 527

 Score = 295 (108.9 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 85/270 (31%), Positives = 136/270 (50%)

Query:   214 ISDYNSRSNKHEKSGTKIDRGWRSGGSI---HNLQYEPTDCPK----------QRHKYSA 260
             + +YN+ SN + K+   ID  W++   +    N   E  D  K           +HK + 
Sbjct:    45 VPNYNNNSNNYGKNLAPID--WKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITI 102

Query:   261 -DGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
              +G+   +   S  ++G  DY+I+SLK  N + P+ IQ   +P  + GK  I   ++GSG
Sbjct:   103 LEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSG 162

Query:   318 KTLAYLLPV-IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
             KTLA++LP  +  L Q  L    K   G P V++LAPT ELA Q+   C   S      R
Sbjct:   163 KTLAFILPAFVHILAQPNL----KYGDG-PIVLVLAPTRELAEQIRQECIKFSTES-KIR 216

Query:   377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
             +    GG  +  Q+  L++GV +LIA PGR + L+++ +  L+ +   +LDE D +  D 
Sbjct:   217 NTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKML-DM 275

Query:   437 DFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              FE+ ++ ++       Q L  +AT P E+
Sbjct:   276 GFELQIRKIVDQIRPDRQTLMWSATWPKEV 305


>TIGR_CMR|SPO_1443 [details] [associations]
            symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
            ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
            PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
        Length = 471

 Score = 290 (107.1 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 82/274 (29%), Positives = 139/274 (50%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F EL  +  ++++++   +  P+ IQA A PP +EG+  +   Q+G+GKT ++ LP+I  
Sbjct:     4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L +       ++ +  PR ++L PT ELA+QV  N  + +K  +     ++ GG   K Q
Sbjct:    64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYTK-HLKLTKALLIGGVSFKEQ 116

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                +  GVDVLIATPGR +   + G L L  ++  ++DE D +  D  F   ++ + S +
Sbjct:   117 DALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175

Query:   450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI-SPGLEEFLVDCSGDQESDKT 508
             P T Q LF +AT+  EI  ++   F      +        S  +E+ +V   G +   + 
Sbjct:   176 PFTRQTLFFSATMAPEI-ERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREA 234

Query:   509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKKS 540
              E     K++ L  LI  E    +  I+FCN+K+
Sbjct:   235 SE-----KRAVLRALIDAEGEKCTNAIIFCNRKT 263


>TAIR|locus:2035741 [details] [associations]
            symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
            IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
            UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
            PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
            KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
            OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
            Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
        Length = 501

 Score = 290 (107.1 bits), Expect = 5.3e-23, P = 5.3e-23
 Identities = 69/241 (28%), Positives = 129/241 (53%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KSF+++G  DY++E +K+  F  P+ IQ+  +P  ++G+  I   ++GSGKTL+YLLP I
Sbjct:    99 KSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               +  + +     +    P V++LAPT ELA Q+              ++  + GG  + 
Sbjct:   159 VHVNAQPML----AHGDGPIVLVLAPTRELAVQIQQEASKFGSSS-KIKTTCIYGGVPKG 213

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q+ +LQ+GV+++IATPGR + +++     L  +   +LDE D +  D  F+  ++ ++S
Sbjct:   214 PQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRML-DMGFDPQIRKIVS 272

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVE-VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
                   Q L+ +AT P E+     + ++   KV++G    + +  + + +   S  Q+ +
Sbjct:   273 HIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYN 332

Query:   507 K 507
             K
Sbjct:   333 K 333


>TAIR|locus:2034481 [details] [associations]
            symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
            "RNA methylation" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
            EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
            OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
            IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
            UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
            PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
            KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
            PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
            GermOnline:AT1G31970 Uniprot:Q9C551
        Length = 537

 Score = 291 (107.5 bits), Expect = 5.5e-23, P = 5.5e-23
 Identities = 97/373 (26%), Positives = 181/373 (48%)

Query:   168 AMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKS 227
             A+     N  K++ + +K T       E+ + +  N V  E  +K       R  K  + 
Sbjct:    16 AVESPMTNKKKKKSKKNKHTEENHEVEEVPQEVT-NGVEEELSNKEKKKKRKREEKESEK 74

Query:   228 GTKIDRGWRSGGSIHNLQYEPTDCPKQ--RHKYSADGDFFSRKSFKELGCSDYMIESLKR 285
               K D   +   +  +L    ++  K     K   +  + + K+F E    + +++  K 
Sbjct:    75 NKKKDVPEKKLEA-EDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCK- 132

Query:   286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL--RQEELQGLSKSTS 343
               F +PS IQ+  +P +++G+  I   ++GSGKTLA+ +P I  +  + +++ G SK  +
Sbjct:   133 -TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVN 191

Query:   344 GSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIA 402
               P  ++L+PT ELA Q+    R   + CG+  +S+ V GG  +  Q+  ++ GVD++I 
Sbjct:   192 --PTCLVLSPTRELAVQISDVLREAGEPCGL--KSICVYGGSSKGPQISAIRSGVDIVIG 247

Query:   403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462
             TPGR   LI+  +L+L ++   +LDE D +  D  FE  ++ ++S++    Q +  +AT 
Sbjct:   248 TPGRLRDLIESNVLRLSDVSFVVLDEADRML-DMGFEEPVRFILSNTNKVRQMVMFSATW 306

Query:   463 PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQ 522
             P++++ KL + F D      P   ++  G  +   +    Q  +   E A   +  ALL+
Sbjct:   307 PLDVH-KLAQEFMD------PNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLE 359

Query:   523 LIEKSPVSKTIVF 535
                KS  ++ +VF
Sbjct:   360 KYHKSQKNRVLVF 372


>UNIPROTKB|E1C2R8 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
            development" evidence=IEA] [GO:0072358 "cardiovascular system
            development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
            Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
        Length = 496

 Score = 289 (106.8 bits), Expect = 6.7e-23, P = 6.7e-23
 Identities = 84/272 (30%), Positives = 129/272 (47%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F +     Y++++L  QNF  P+ IQ   FP  + G+  +   Q+GSGKTLAYLLP I 
Sbjct:    91 AFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 150

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        KC    +S  + GG  +  
Sbjct:   151 HINHQPY--LERGDG--PICLVLAPTRELAQQVQQVADDYGKCS-RLKSTCIYGGAPKGP 205

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   206 QIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRML-DMGFEPQIRKIVDQ 264

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    V +  G   +S       +VD   + E D 
Sbjct:   265 IRPDRQTLMWSATWPKEV-RQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKD- 322

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                    +K   L++ I     +KTI+F   K
Sbjct:   323 -------HKLIQLMEEIMAEKENKTIIFVETK 347


>UNIPROTKB|E2RKU0 [details] [associations]
            symbol:DDX28 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 CTD:55794 GeneTree:ENSGT00670000098028 OMA:LCSKGWK
            EMBL:AAEX03004122 RefSeq:XP_546867.1 Ensembl:ENSCAFT00000032372
            GeneID:489747 KEGG:cfa:489747 Uniprot:E2RKU0
        Length = 527

 Score = 289 (106.8 bits), Expect = 8.7e-23, P = 8.7e-23
 Identities = 97/326 (29%), Positives = 155/326 (47%)

Query:   233 RGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLK--RQNFLR 290
             RGW++  S    + +     + +H+  A  +  S  SF +LG    ++ +LK      LR
Sbjct:    91 RGWKNRRS----RRDHFSIERAQHEVPALRNLSSEGSFADLGLEPPVLRALKDAAPEVLR 146

Query:   291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
             P+ +Q+   PP++ G+  + A ++GSGKTL YLLP++QRL      GL+  ++ +PR ++
Sbjct:   147 PTTVQSSTIPPLLRGRHILCAAETGSGKTLGYLLPLLQRLLGRP--GLNPHSTPAPRGLV 204

Query:   351 LAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGF-RQKTQLENLQEGVDVLIATPGRFM 408
             L P+ ELA QV +  + L    G+  R +    G  R + QL   Q   DVL+ATPG   
Sbjct:   205 LVPSRELAEQVRAVAQPLGISLGLRVRELGGGHGMNRIRVQLSK-QPPADVLVATPGALW 263

Query:   409 FLIKEGILQLINLRCAILDEVDILFNDEDFEVA---LQ-SLISSSP--------VTAQYL 456
               +K  ++ L  L   +LDE D L ++   E+    LQ S I+  P          AQ +
Sbjct:   264 KALKSHLVSLKQLSFLVLDEADTLLDESFLELVDYILQKSHIAEDPDDLKDPFNPKAQLV 323

Query:   457 FVTATLPVEIYNKLVEVF-PDC-KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
              V AT P  +   L +V  PD    +    +H I P + +  +   G   ++K  E   +
Sbjct:   324 LVGATFPEGVSQLLSKVASPDSLTTITSSKLHCIMPHVRQTFMRLKG---AEKVTELVQI 380

Query:   515 NKKSALLQLIEKSPVSKTIVFCNKKS 540
              K+    +     P    +VFCN  S
Sbjct:   381 LKQHD--RAYRTGPSGTILVFCNSSS 404


>SGD|S000002189 [details] [associations]
            symbol:DBP10 "Putative ATP-dependent RNA helicase of the
            DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
            GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
            GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
            OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
            RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
            DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
            PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
            KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
            NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
            GO:GO:0000466 Uniprot:Q12389
        Length = 995

 Score = 293 (108.2 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 76/239 (31%), Positives = 129/239 (53%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF   G S  ++ ++KR+ F +P+ IQ    P +++ +  +   ++GSGKT A++LP+++
Sbjct:   138 SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE 197

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             +L+       S S     R VIL+P+ ELA Q  +  +  ++ G   RS+++TGG   + 
Sbjct:   198 KLK-------SHSGKIGARAVILSPSRELAMQTFNVFKDFAR-GTELRSVLLTGGDSLEE 249

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q   +    DV+IATPGRF+ L  E  L L ++   + DE D LF +  F+  L  L++S
Sbjct:   250 QFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF-EMGFQEQLNELLAS 308

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE-FLVDCSGDQESD 506
              P T Q L  +ATLP  + + +     +  +V      ++S  LE  FL   + D+E++
Sbjct:   309 LPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREAN 367


>DICTYBASE|DDB_G0281711 [details] [associations]
            symbol:ddx27 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
            EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
            STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
            KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
        Length = 783

 Score = 289 (106.8 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 105/374 (28%), Positives = 176/374 (47%)

Query:   171 KKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESI-DKNISDYNSRSNKHEKSGT 229
             +KTV  LK +   S TT +  N +    +  DND   E + ++   +     N++EK   
Sbjct:    95 RKTVKKLKADDDKSVTTKTTNNNKSKKSNNNDNDDDDEEVNEEEEEEEEEEDNENEKEIN 154

Query:   230 KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFL 289
             K  +  +   +             ++ K   + +     +F+EL  S  +++++++  F 
Sbjct:   155 KKQQQQQQQSNKQTTDKIKVLQSNRKLKKIVEEEL---PTFEELHLSRPLLKAVQKLGFS 211

Query:   290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL--RQEELQGLSKSTSGSPR 347
             +P+ IQA A P  + GK  + +  +GSGKT A+LLPV++RL  R  E + +        R
Sbjct:   212 QPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAI--------R 263

Query:   348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
             V+IL PT ELA Q  S   +L++      S ++ GG   K Q   L++  DV+IATPGR 
Sbjct:   264 VLILLPTRELALQCQSVMENLAQFS-NITSCLIVGGLSNKAQEVELRKSPDVVIATPGRL 322

Query:   408 M-FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             +  L+    + L +L   ILDE D L  D  F+  +  ++ S P   Q +  +ATL  E+
Sbjct:   323 IDHLLNAHGIGLDDLEILILDEADRLL-DMGFKDEINKIVESCPTNRQTMLFSATLNDEV 381

Query:   467 YNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE 525
                L ++     + V    + +++  LE+  V       SD+ P  A L   S   ++  
Sbjct:   382 -KTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDR-P--AIL--LSLCTRVFN 435

Query:   526 KSPVSKTIVFCNKK 539
             +     TI+FC  K
Sbjct:   436 QGG---TIIFCRSK 446


>TIGR_CMR|DET_0183 [details] [associations]
            symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
            STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
            OMA:NFAPAVM ProtClustDB:CLSK837629
            BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
        Length = 560

 Score = 285 (105.4 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 70/204 (34%), Positives = 109/204 (53%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF+    +  ++  ++   +  P+ IQA A PP++EG   I   Q+G+GKT AY LPVIQ
Sbjct:     2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             ++       LS +  G  R ++LAPT ELA Q+  + RSL +     R   + GG     
Sbjct:    62 KM-------LS-TPRGRVRTLVLAPTRELACQIAESFRSLGQ-RARIRECSIYGGVNMDQ 112

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+  L+ GVDV++A PGR +  I  G + +  +   I+DE D +F D  F+  +QS++  
Sbjct:   113 QIRRLRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMF-DMGFQPDIQSILKC 171

Query:   449 SPVTAQYLFVTATLPVEIYNKLVE 472
                  Q L  +AT+P E+    +E
Sbjct:   172 LVQPHQTLLFSATMPPEVRKLTLE 195


>UNIPROTKB|Q9KLH6 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 279 (103.3 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 70/198 (35%), Positives = 106/198 (53%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F +LG    ++ +L       P+ IQ  A P V++GK  +   Q+G+GKT A+ LP+IQ
Sbjct:     7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             R  ++  Q   ++ S   R ++L PT ELA QVL + ++ +K G   + + V GG   K 
Sbjct:    67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             QL +L+ GVD+LIATPGR +       L L  +   +LDE D +  D  F   LQ ++  
Sbjct:   124 QLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRML-DMGFMPDLQRVLRR 182

Query:   449 SPVTAQYLFVTATLPVEI 466
                  Q LF +AT   +I
Sbjct:   183 LSPLRQTLFFSATFDSKI 200


>TIGR_CMR|VC_A0768 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 279 (103.3 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 70/198 (35%), Positives = 106/198 (53%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F +LG    ++ +L       P+ IQ  A P V++GK  +   Q+G+GKT A+ LP+IQ
Sbjct:     7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             R  ++  Q   ++ S   R ++L PT ELA QVL + ++ +K G   + + V GG   K 
Sbjct:    67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             QL +L+ GVD+LIATPGR +       L L  +   +LDE D +  D  F   LQ ++  
Sbjct:   124 QLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRML-DMGFMPDLQRVLRR 182

Query:   449 SPVTAQYLFVTATLPVEI 466
                  Q LF +AT   +I
Sbjct:   183 LSPLRQTLFFSATFDSKI 200


>UNIPROTKB|P25888 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
            PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
            ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
            MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
            EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
            KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
            EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
            BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
            Genevestigator:P25888 Uniprot:P25888
        Length = 454

 Score = 281 (104.0 bits), Expect = 3.6e-22, P = 3.6e-22
 Identities = 71/200 (35%), Positives = 109/200 (54%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF  LG S  ++ ++  Q +  P+ IQ  A P V+EG+  + + Q+G+GKT  + LP++Q
Sbjct:     2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query:   329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
              L  RQ   +G         R +IL PT ELA+Q+  N R  SK  +  RS+VV GG   
Sbjct:    62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115

Query:   387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
               Q+  L+ GVDVL+ATPGR + L  +  ++L  +   +LDE D +  D  F   ++ ++
Sbjct:   116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVL 174

Query:   447 SSSPVTAQYLFVTATLPVEI 466
             +  P   Q L  +AT   +I
Sbjct:   175 TKLPAKRQNLLFSATFSDDI 194


>UNIPROTKB|Q0C354 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
            GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
            BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
        Length = 464

 Score = 281 (104.0 bits), Expect = 4.1e-22, P = 4.1e-22
 Identities = 65/194 (33%), Positives = 110/194 (56%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ LG +  ++ SL +  +  P+ IQ  A P V++G+  +   Q+G+GKTLA+  P++ R
Sbjct:     9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L +       + T    RV++LAPT ELA Q+ ++  +    G+  R ++V GG +   Q
Sbjct:    69 LSRNASPAPVRGT----RVLVLAPTRELAGQIATSFGTYG-AGLNLRVVMVCGGAKIGGQ 123

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             +  L+ G  +L+ATPGR + L+++  + L  +   ILDE D +  D  F  AL+++  + 
Sbjct:   124 IRQLERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQML-DLGFIHALRAIAKNV 182

Query:   450 PVTAQYLFVTATLP 463
             P   Q LF +AT+P
Sbjct:   183 PSKRQTLFFSATMP 196


>TIGR_CMR|CPS_3401 [details] [associations]
            symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
            STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
            OMA:HLIKEHQ ProtClustDB:CLSK907013
            BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
        Length = 432

 Score = 279 (103.3 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 67/200 (33%), Positives = 111/200 (55%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F ELG    ++  L    + +P+ IQA A P V  G+  I    +GSGKT  + LP++Q
Sbjct:     9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68

Query:   329 RLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
             +LR++   G SK++ G+    ++L PT ELA QV  + +S +       +++ V GG   
Sbjct:    69 KLREDISSG-SKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSV 127

Query:   387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
               Q+  L+ GVD+L+ATPGR + LI    ++L  ++  +LDE D + +   F   L +L+
Sbjct:   128 NIQMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLS-LGFTEELTALL 186

Query:   447 SSSPVTAQYLFVTATLPVEI 466
             + +P   Q L  +AT P ++
Sbjct:   187 ALTPKKKQTLLFSATFPEQV 206


>ZFIN|ZDB-GENE-030131-18 [details] [associations]
            symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
            UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
            KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
            Uniprot:F1QBS1
        Length = 671

 Score = 285 (105.4 bits), Expect = 5.1e-22, P = 5.1e-22
 Identities = 91/303 (30%), Positives = 144/303 (47%)

Query:   241 IHNL-QYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAM 297
             +H++ QY+  +  ++R + +  G    +   +F +     Y+++ L +QNF  P+ IQA 
Sbjct:    66 VHHMSQYDVEEYRRKR-EITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQ 124

Query:   298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357
              FP  + G+  +   Q+GSGKTLAYLLP I  +  +    L +     P  ++LAPT EL
Sbjct:   125 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTREL 180

Query:   358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
             A QV        K     +S  V GG  +  Q+ +L+ GV++ IATPGR +  ++ G   
Sbjct:   181 AQQVQQVAFDYGKSS-RIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTN 239

Query:   418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC 477
             L      +LDE D +  D  FE  ++ ++       Q L  +AT P E+  +L E F   
Sbjct:   240 LRRCTYLVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLQD 297

Query:   478 KVVMGPGMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFC 536
              V +  G   +S       +VD   + E D        NK   L++ I     +KTI+F 
Sbjct:   298 YVQINIGALELSANHNILQIVDVCMENEKD--------NKLIQLMEEIMAEKENKTIIFV 349

Query:   537 NKK 539
               K
Sbjct:   350 ETK 352


>RGD|1311976 [details] [associations]
            symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
            "mitochondrion" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
            evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311976
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0042645
            EMBL:CH473972 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
            OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
            IPI:IPI00870370 RefSeq:NP_001102368.1 UniGene:Rn.140812
            Ensembl:ENSRNOT00000026817 GeneID:364995 KEGG:rno:364995
            UCSC:RGD:1311976 NextBio:686447 Uniprot:D4A7Q5
        Length = 540

 Score = 282 (104.3 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 96/330 (29%), Positives = 159/330 (48%)

Query:   233 RGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ--NFLR 290
             RGW+   S    + +     + + +  A  +  SR +F +LG    ++ +L++     ++
Sbjct:    95 RGWKHRRS----RQDHFSIERVQQEAPAMRNLSSRGNFVDLGLEPRVLLALQKAVPEIVQ 150

Query:   291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG--LSKSTSGSPRV 348
             P+ +Q+   PP++ G+  + A ++GSGKTL+YLLP+ QRL    L+G  L   +S +PR 
Sbjct:   151 PTSVQSKTIPPLLRGRHILCAAETGSGKTLSYLLPLFQRL----LKGPELDSRSSTAPRG 206

Query:   349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF---RQKTQLENLQEGVDVLIATPG 405
             ++L P+ ELA QV +  +SL +  +  + + + GG    R K QL       DVL+ATPG
Sbjct:   207 LVLVPSRELAEQVQAVAQSLGRY-LDLQVIELGGGLGMNRLKLQLGKWPSA-DVLVATPG 264

Query:   406 RFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT------------- 452
                  +K  ++ L +L   +LDEVD L  DE F   +  ++  SP+              
Sbjct:   265 ALWKALKSQLISLHHLNFIVLDEVDTLL-DESFVELVDYILGKSPIAESPAELEDPFNPK 323

Query:   453 AQYLFVTATLPVEIYNKLVEVF-PDC-KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPE 510
             AQ + V AT P  +   L +V  PD    +    +H I P + +  +   G   ++K  E
Sbjct:   324 AQLVMVGATFPEGLNQLLSKVTSPDSLTTITSSKLHCIMPHVRQTFMRLKG---TEKVTE 380

Query:   511 TAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
                + K+       E  P    +VFCN  S
Sbjct:   381 LIQILKQHDKANKAE--PSGTVLVFCNSAS 408


>UNIPROTKB|F8VRX4 [details] [associations]
            symbol:DDX54 "ATP-dependent RNA helicase DDX54"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
            ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
            ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
        Length = 208

 Score = 262 (97.3 bits), Expect = 6.1e-22, P = 6.1e-22
 Identities = 64/194 (32%), Positives = 106/194 (54%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ +G S  + + + ++ +  P+ IQ    P +++GK  +   ++GSGKT  +LLP+ +R
Sbjct:    15 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 74

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L+    Q      +G+ R +IL+PT ELA Q L   + L K     ++ ++ GG R + Q
Sbjct:    75 LKTHSAQ------TGA-RALILSPTRELALQTLKFTKELGKF-TGLKTALILGGDRMEDQ 126

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                L E  D++IATPGR + +  E  L+L ++   + DE D LF +  F   LQ +I+  
Sbjct:   127 FAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIARL 185

Query:   450 PVTAQYLFVTATLP 463
             P   Q +  +ATLP
Sbjct:   186 PGGHQTVLFSATLP 199


>UNIPROTKB|Q3MSQ8 [details] [associations]
            symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
            species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
            evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
            GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
            ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
        Length = 724

 Score = 284 (105.0 bits), Expect = 7.8e-22, P = 7.8e-22
 Identities = 77/276 (27%), Positives = 143/276 (51%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+E    D + +++ +  +++ + IQ  + P +V G+  +   Q+GSGKT A+LLP++ 
Sbjct:   287 TFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILA 346

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              L  + ++  +  T   P  +I+APT EL +Q+  + R  S  G   R +V+ GG +   
Sbjct:   347 HLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSY-GTCVRPVVIYGGTQMFH 405

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
              L+ + EG ++L ATPGR + +I++  + L  LR  +LDE D +  D  F   +++L+ S
Sbjct:   406 SLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRML-DMGFREDIENLLKS 464

Query:   449 SPVTA----QYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
             S + +    Q L  +AT P  I +   E+  PD   V+   +      +E+ ++      
Sbjct:   465 SGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVI------ 518

Query:   504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             E D+        KK  L++++++    +T+VF   K
Sbjct:   519 EVDE------FGKKDKLMEILQEIGSERTMVFVKTK 548


>MGI|MGI:1919236 [details] [associations]
            symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
            "mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
            HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
            EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
            IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
            ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
            PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
            GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
            NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
            GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
        Length = 540

 Score = 280 (103.6 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 92/296 (31%), Positives = 147/296 (49%)

Query:   266 SRKSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
             SR SF +LG    ++ +L+      ++P+ +Q+   PP++ G+  + A ++GSGKTL+YL
Sbjct:   124 SRGSFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYL 183

Query:   324 LPVIQRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
             LP+ QRL R  +L   S+S + +PR ++L P+ ELA QV +  +SL    +  + + + G
Sbjct:   184 LPLFQRLLRGSDLD--SRSFT-APRGLVLVPSRELAEQVQAVAQSLGGY-LGLQVIELGG 239

Query:   383 GF---RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
             G    R K QL   +   DVL+ATPG     +K  ++ L +L   +LDEVD L  DE F 
Sbjct:   240 GLGMSRLKLQLYR-RPAADVLVATPGALWKALKSQLISLQHLNFIVLDEVDTLL-DESFL 297

Query:   440 VALQSLISSSPVT-------------AQYLFVTATLPVEIYNKLVEVF-PDC-KVVMGPG 484
               +  ++  SP+              AQ + V AT P  +   L +V  PD    +    
Sbjct:   298 ELVDYILEKSPIAESPAELEDPFNPKAQLVLVGATFPEGLNQLLSKVTSPDSLTTITSSK 357

Query:   485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
             +H + P + +  +   G   +DK  E   + K+       E  P    +VFCN  S
Sbjct:   358 LHCLMPHVRQTFMRLKG---ADKVTELVQILKQQDKASKTE--PSGTVLVFCNSAS 408


>UNIPROTKB|A4QSS5 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase DBP2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
            ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
            KEGG:mgr:MGG_16901 Uniprot:A4QSS5
        Length = 548

 Score = 280 (103.6 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 72/238 (30%), Positives = 115/238 (48%)

Query:   241 IHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
             + N      D  ++ H  +  G    +  ++F E G   Y+++ +K Q F  P+ IQ+  
Sbjct:    96 VTNRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQG 155

Query:   299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
             +P  + G+  +   ++GSGKTL Y LP I  +  + L     +    P V+ILAPT ELA
Sbjct:   156 WPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLL----APGDGPIVLILAPTRELA 211

Query:   359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
              Q+ +      K     R+  V GG  +  Q+ +L  GV+V IATPGR + +++ G   L
Sbjct:   212 VQIQAEISKFGKSS-RIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNL 270

Query:   419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD 476
               +   +LDE D +  D  FE  ++ +I       Q L  +AT P E+ N   +   D
Sbjct:   271 RRVTYLVLDEADRML-DMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQD 327


>SGD|S000000441 [details] [associations]
            symbol:PRP5 "RNA helicase in the DEAD-box family"
            species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
            site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
            GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
            GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
            GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
            EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
            ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
            MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
            GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
            Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
        Length = 849

 Score = 284 (105.0 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 81/274 (29%), Positives = 147/274 (53%)

Query:   240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCS-DYMIESLKRQNFLRPSQIQAMA 298
             S+ N++ + T CPK   K+S            +LG S D M+   ++ +F   + IQ+ A
Sbjct:   239 SLDNIKIKGTGCPKPVTKWS------------QLGLSTDTMVLITEKLHFGSLTPIQSQA 286

Query:   299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
              P ++ G+  I   ++GSGKT++YLLP++++++ +  + LSK  +G P  +ILAPT ELA
Sbjct:   287 LPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQ--RPLSKHETG-PMGLILAPTRELA 343

Query:   359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI--KEG-I 415
              Q+       ++     RS+  TGG   K Q+ +L+ G ++++ATPGRF+ ++   +G +
Sbjct:   344 LQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKL 403

Query:   416 LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF- 474
             L    +   ++DE D LF D  FE  +  ++ +     Q +  +AT P ++ +  V V  
Sbjct:   404 LSTKRITFVVMDEADRLF-DLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLH 462

Query:   475 -PDCKVVMGPGMHRISPGLEE-FLVDCSGDQESD 506
              P    +   GM  ++  +++ F +  S D++ D
Sbjct:   463 SPISITINSKGM--VNENVKQKFRICHSEDEKFD 494


>CGD|CAL0003204 [details] [associations]
            symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
            EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
            ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
            GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
            Uniprot:Q59LU0
        Length = 562

 Score = 280 (103.6 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 82/255 (32%), Positives = 127/255 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E G  DY+++ +K Q F +P+ IQ   +P  + G+  I    +GSGKTL+Y LP I 
Sbjct:   128 TFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIV 187

Query:   329 RLR-QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
              +  Q +LQ         P V++LAPT ELA Q+ + C    K     R+  V GG  + 
Sbjct:   188 HINAQPQLQ-----YGDGPIVLVLAPTRELAVQIQTECSKFGKSS-RIRNTCVYGGAPKG 241

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q+ +L  GV++ IATPGR + +++ G   L  +   +LDE D +  D  FE  ++ ++ 
Sbjct:   242 PQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVD 300

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP----GMHRISPGLEEFLVDCSGD 502
                   Q L  +AT P E+     +   D  +V +G       H I+  L E + + S  
Sbjct:   301 QIRPDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQ-LVEVIDEFSKR 359

Query:   503 QESDKTPETAFLNKK 517
                 K  E+A LN+K
Sbjct:   360 DRLVKHLESA-LNEK 373


>TAIR|locus:2065215 [details] [associations]
            symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
            HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
            IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
            ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
            PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
            KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
            OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
            Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
        Length = 760

 Score = 288 (106.4 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 80/246 (32%), Positives = 128/246 (52%)

Query:   245 QYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
             + E TD  +QR      G    R  K+F++ G S  ++ ++K+Q + +P+ IQ  A P V
Sbjct:   204 EQETTDY-RQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIV 262

Query:   303 VEGKSCILADQSGSGKTLAYLLPVIQRLR-QEELQGLSKSTSGSPRVVILAPTAELASQV 361
             + G+  I   ++GSGKT A++LP+I  +  Q ELQ         P  VI APT ELA Q+
Sbjct:   263 LSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-----RDEGPIGVICAPTRELAHQI 317

Query:   362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
                 +  SK     R   V GG  +  Q + L+ G ++++ATPGR + ++K   L ++  
Sbjct:   318 FLEAKKFSKA-YGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRA 376

Query:   422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVV 480
                +LDE D +F D  FE  ++S++       Q L  +AT+P ++     E+  D  +V 
Sbjct:   377 SYLVLDEADRMF-DLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVT 435

Query:   481 MGP-GM 485
             +G  GM
Sbjct:   436 VGEVGM 441

 Score = 38 (18.4 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query:    12 KAAASFGLPLASPPLRRNSNTDK 34
             KA    GL LA+  L    N+D+
Sbjct:   120 KAKKDLGLTLAADALNAGYNSDE 142


>CGD|CAL0005725 [details] [associations]
            symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
            EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
            ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
            KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
        Length = 884

 Score = 283 (104.7 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 74/257 (28%), Positives = 136/257 (52%)

Query:   288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347
             F +PS IQ+ A P ++ G+  I   ++GSGKTL+Y+LP+++ ++ ++    SK   G P 
Sbjct:   314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQF---SKDNQG-PI 369

Query:   348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
              +IL+PT ELA Q+     + +K     R     GG   + Q+  L++GV++++ TPGR 
Sbjct:   370 GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRV 429

Query:   408 MFLIKEGILQLINL-RCA--ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464
             + L+     +++NL RC   +LDE D +F D  FE  +  +++      Q +  +AT P 
Sbjct:   430 IDLLAANSGRVLNLKRCTFVVLDEADRMF-DLGFEPQVNKILTQIRPDRQTVLFSATFPR 488

Query:   465 EIYNKLVEVFPDCKVVMGPGMHRISPGL-EEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
             ++     ++  D  V++  G+  ++P + +E ++  +  +E DK  +         L   
Sbjct:   489 KMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNY 548

Query:   524 IEKSPVSKTIVFCNKKS 540
               + P SK +VF  K++
Sbjct:   549 QIEHPDSKILVFTEKQN 565


>UNIPROTKB|Q5ADL0 [details] [associations]
            symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
            PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
            EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
            ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
            KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
        Length = 884

 Score = 283 (104.7 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 74/257 (28%), Positives = 136/257 (52%)

Query:   288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347
             F +PS IQ+ A P ++ G+  I   ++GSGKTL+Y+LP+++ ++ ++    SK   G P 
Sbjct:   314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQF---SKDNQG-PI 369

Query:   348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
              +IL+PT ELA Q+     + +K     R     GG   + Q+  L++GV++++ TPGR 
Sbjct:   370 GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRV 429

Query:   408 MFLIKEGILQLINL-RCA--ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464
             + L+     +++NL RC   +LDE D +F D  FE  +  +++      Q +  +AT P 
Sbjct:   430 IDLLAANSGRVLNLKRCTFVVLDEADRMF-DLGFEPQVNKILTQIRPDRQTVLFSATFPR 488

Query:   465 EIYNKLVEVFPDCKVVMGPGMHRISPGL-EEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
             ++     ++  D  V++  G+  ++P + +E ++  +  +E DK  +         L   
Sbjct:   489 KMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNY 548

Query:   524 IEKSPVSKTIVFCNKKS 540
               + P SK +VF  K++
Sbjct:   549 QIEHPDSKILVFTEKQN 565


>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
            symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
            helicase, putative" species:5833 "Plasmodium falciparum"
            [GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
            EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
            EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
            Uniprot:C6KTE4
        Length = 601

 Score = 279 (103.3 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 97/343 (28%), Positives = 167/343 (48%)

Query:   136 NNDCSIP-SKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFR 194
             +ND ++  +KK  I    + K ++ K +++ + +     ++ LK E   S++    E+  
Sbjct:    14 SNDNNLKKTKKNSI--IKKKKKKKKKEILENKDS----NIDNLKNENYRSESEAESESTN 67

Query:   195 E---LGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEP-TD 250
             +   L     DN++  E+ + N ++ N   NK+ K+    +         H+   +  TD
Sbjct:    68 DSVSLNNIEEDNELN-ENSENNENNENDEDNKNNKNNENNENTSSEEICDHDKNDKTYTD 126

Query:   251 CPKQR---HKYSADGD-FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
               K     H  +   + F+S   F+EL   D + + LK  NF+  ++IQA   P  + GK
Sbjct:   127 EIKSNNSDHNNNNSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGK 186

Query:   307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
               + A ++GSGKTLA+L+P I  L    ++ L K+ +G   V+I++PT EL  Q+   C+
Sbjct:   187 DILGAAKTGSGKTLAFLVPSINILYN--IKFLPKNGTG---VLIISPTRELCLQIYQVCK 241

Query:   367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF---MFLIKEGILQLINLRC 423
              L K  +P  + ++ GG  +  + +    G+++LIATPGR    M   KE I +  NL C
Sbjct:   242 DLCKY-IPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYK--NLIC 298

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              I+DE D L     FE  +  +I   P   Q    +AT   ++
Sbjct:   299 LIIDEADRLLQI-GFEEEINLIIKRLPKKRQTALFSATQTTKV 340


>UNIPROTKB|C6KTE4 [details] [associations]
            symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
            ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
            GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
            ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
        Length = 601

 Score = 279 (103.3 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 97/343 (28%), Positives = 167/343 (48%)

Query:   136 NNDCSIP-SKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFR 194
             +ND ++  +KK  I    + K ++ K +++ + +     ++ LK E   S++    E+  
Sbjct:    14 SNDNNLKKTKKNSI--IKKKKKKKKKEILENKDS----NIDNLKNENYRSESEAESESTN 67

Query:   195 E---LGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEP-TD 250
             +   L     DN++  E+ + N ++ N   NK+ K+    +         H+   +  TD
Sbjct:    68 DSVSLNNIEEDNELN-ENSENNENNENDEDNKNNKNNENNENTSSEEICDHDKNDKTYTD 126

Query:   251 CPKQR---HKYSADGD-FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
               K     H  +   + F+S   F+EL   D + + LK  NF+  ++IQA   P  + GK
Sbjct:   127 EIKSNNSDHNNNNSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGK 186

Query:   307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
               + A ++GSGKTLA+L+P I  L    ++ L K+ +G   V+I++PT EL  Q+   C+
Sbjct:   187 DILGAAKTGSGKTLAFLVPSINILYN--IKFLPKNGTG---VLIISPTRELCLQIYQVCK 241

Query:   367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF---MFLIKEGILQLINLRC 423
              L K  +P  + ++ GG  +  + +    G+++LIATPGR    M   KE I +  NL C
Sbjct:   242 DLCKY-IPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYK--NLIC 298

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              I+DE D L     FE  +  +I   P   Q    +AT   ++
Sbjct:   299 LIIDEADRLLQI-GFEEEINLIIKRLPKKRQTALFSATQTTKV 340


>UNIPROTKB|Q90ZF6 [details] [associations]
            symbol:olvas "VASA" species:8090 "Oryzias latipes"
            [GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
            RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
            SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
        Length = 617

 Score = 279 (103.3 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 81/275 (29%), Positives = 131/275 (47%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+E    + +  ++ R  +++P+ +Q    P +  G+  +   Q+GSGKT A+LLP++Q
Sbjct:   182 TFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQ 241

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             +L  + +     S    P  VI+APT EL +Q+    R  S  G   R +VV GG     
Sbjct:   242 QLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFS-FGTCVRPVVVYGGVNTGY 300

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+  +++G +VL  TPGR + +I  G + L  +R  +LDE D +  D  FE  ++ L+ S
Sbjct:   301 QMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRML-DMGFEPDMRRLVGS 359

Query:   449 ----SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
                 S    Q L  +AT P +I     +      + +  G   +  G       C+ D E
Sbjct:   360 PGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVG---VVGGA------CT-DVE 409

Query:   505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                   T F NK+  LL L+      +T+VF   K
Sbjct:   410 QTFLQVTKF-NKREQLLDLLRTIGSERTMVFVETK 443


>UNIPROTKB|Q8ECL2 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 272 (100.8 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 67/199 (33%), Positives = 105/199 (52%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF ELG    +   L    ++ P+ +QA   P V+ G+  +    +GSGKT A+ LP++Q
Sbjct:    10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
             RL   E +   KS +G  R ++L PT ELA QV  +  S  S      + +   GG    
Sbjct:    70 RL--SEAKSADKS-AGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q+++L+ G DVL+ATPGR + L+    L+L  +   +LDE D + +   F   L+ +++
Sbjct:   127 LQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLS-LGFTEELEQVLA 185

Query:   448 SSPVTAQYLFVTATLPVEI 466
             + P   Q L  +AT P E+
Sbjct:   186 ALPRQKQTLLFSATFPEEV 204


>TIGR_CMR|SO_3125 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 272 (100.8 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 67/199 (33%), Positives = 105/199 (52%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF ELG    +   L    ++ P+ +QA   P V+ G+  +    +GSGKT A+ LP++Q
Sbjct:    10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
             RL   E +   KS +G  R ++L PT ELA QV  +  S  S      + +   GG    
Sbjct:    70 RL--SEAKSADKS-AGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q+++L+ G DVL+ATPGR + L+    L+L  +   +LDE D + +   F   L+ +++
Sbjct:   127 LQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLS-LGFTEELEQVLA 185

Query:   448 SSPVTAQYLFVTATLPVEI 466
             + P   Q L  +AT P E+
Sbjct:   186 ALPRQKQTLLFSATFPEEV 204


>WB|WBGene00013214 [details] [associations]
            symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
            HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
            SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
            GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
            WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
            Uniprot:Q9XVZ6
        Length = 504

 Score = 275 (101.9 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 66/209 (31%), Positives = 117/209 (55%)

Query:   269 SFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             SF++  G +  ++  +++  F +PS IQ+  +P ++ G+ CI   Q+GSGKTLA+LLP +
Sbjct:    84 SFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPAL 143

Query:   328 QRLRQE--ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
               +  +  + +   +    SP V++L+PT ELA Q+    +  S  G  ++S+ + GG  
Sbjct:   144 LHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNG--YKSVCLYGGGS 201

Query:   386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
             +  Q+E  + GV+++IATPGR   L  +G++ L ++   +LDE D +  D  FEVA++ +
Sbjct:   202 RPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRML-DMGFEVAIRRI 260

Query:   446 ISSSPVTAQYLFVTATLPVEIYNKLVEVF 474
             +            +AT P E   KL + +
Sbjct:   261 LFEIRPDRLVALTSATWP-EGVRKLTDKY 288


>ZFIN|ZDB-GENE-030131-925 [details] [associations]
            symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
            ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
        Length = 617

 Score = 277 (102.6 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 83/271 (30%), Positives = 129/271 (47%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F E     Y+++ + +QN+  P+ IQA  +P  + GK  +   Q+GSGKTL+YLLP I  
Sbjct:    98 FHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVH 157

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             +     Q   +   G P  ++LAPT ELA QV        K     +S  + GG  +  Q
Sbjct:   158 INH---QPFLEHGDG-PICLVLAPTRELAQQVQQVAAEYGKAS-RIKSTCIYGGAPKGPQ 212

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             + +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++   
Sbjct:   213 IRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRML-DMGFEPQIRKIVDQI 271

Query:   450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDKT 508
                 Q L  +AT P E+  +L E F    + +  G  ++S       +VD   D E +  
Sbjct:   272 RPDRQTLMWSATWPKEV-RQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKE-- 328

Query:   509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                   +K   LL+ I     +KTI+F   K
Sbjct:   329 ------DKLIRLLEEIMSEKENKTIIFVETK 353


>ZFIN|ZDB-GENE-990415-272 [details] [associations]
            symbol:vasa "vasa homolog" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
            EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
            ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
            GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
            NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
        Length = 716

 Score = 278 (102.9 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 79/275 (28%), Positives = 132/275 (48%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+E G  D + +++ +  +++P+ +Q    P +  G+  +   Q+GSGKT A+LLP++Q
Sbjct:   278 TFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 337

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             R   + +     S    P  +I+APT EL +Q+    R  +  G   R +VV GG     
Sbjct:   338 RFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAY-GTCVRPVVVYGGINTGY 396

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
              +  + +G +VL ATPGR   LI  G + L  +R  +LDE D +  D  FE  ++ L++S
Sbjct:   397 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRML-DMGFEPEMRKLVAS 455

Query:   449 ----SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
                 S    Q L  +AT P +I     +      + +  G   +  G       CS D E
Sbjct:   456 PGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVG---VVGGA------CS-DVE 505

Query:   505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     + +K+  LL+L+  +   +T+VF   K
Sbjct:   506 QTVVQVDQY-SKRDQLLELLRATGNERTMVFVETK 539


>UNIPROTKB|F1NM08 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003712 "transcription cofactor activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
            ArrayExpress:F1NM08 Uniprot:F1NM08
        Length = 595

 Score = 276 (102.2 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 85/272 (31%), Positives = 129/272 (47%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      ++E ++RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    83 NFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 142

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV       S+     +S  + GG  +  
Sbjct:   143 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYSRA-CRLKSTCIYGGAPKGP 197

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   198 QIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRML-DMGFEPQIRKIVDQ 256

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    V +  G   +S       +VD   D E D 
Sbjct:   257 IRPDRQTLMWSATWPKEV-RQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKD- 314

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                    +K   L++ I     +KTIVF   K
Sbjct:   315 -------DKLIRLMEEIMSEKENKTIVFVETK 339


>UNIPROTKB|F1NXI3 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0003713 "transcription coactivator
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
            receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
            intracellular estrogen receptor signaling pathway" evidence=IEA]
            [GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
            GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
            GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
            ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
            ArrayExpress:F1NXI3 Uniprot:F1NXI3
        Length = 603

 Score = 276 (102.2 bits), Expect = 4.0e-21, P = 4.0e-21
 Identities = 85/272 (31%), Positives = 129/272 (47%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      ++E ++RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    91 NFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 150

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV       S+     +S  + GG  +  
Sbjct:   151 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYSRA-CRLKSTCIYGGAPKGP 205

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   206 QIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRML-DMGFEPQIRKIVDQ 264

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    V +  G   +S       +VD   D E D 
Sbjct:   265 IRPDRQTLMWSATWPKEV-RQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKD- 322

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                    +K   L++ I     +KTIVF   K
Sbjct:   323 -------DKLIRLMEEIMSEKENKTIVFVETK 347


>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
            symbol:PFL1310c "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
            metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
            ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
            EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
            EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
            Uniprot:Q8I5E7
        Length = 742

 Score = 210 (79.0 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 61/191 (31%), Positives = 98/191 (51%)

Query:   349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
             +IL PT EL  QVL   +S  K  +P +S+ V GG  +  Q+ NL++G D+++ATPGR +
Sbjct:   431 LILLPTRELCLQVLDEIKSFEK-NLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLL 489

Query:   409 FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468
               ++ G + L+     ++DE D L  D  FE  L+ +++      Q LF+TAT P ++  
Sbjct:   490 DFLENGNINLLKCIYVVIDEADRLL-DMGFEKQLRKIMTQVNKNKQLLFLTATWPEQV-R 547

Query:   469 KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSP 528
             KL   F  C     P   +I  G  E  +  + + E +    ++   KK  L  L E   
Sbjct:   548 KLAYDF--CSY--DPV--KIQIGKNE--LTANKNIEQNVIISSSIDMKKKLLDWLKENYE 599

Query:   529 VSKTIVFCNKK 539
              +K ++FC+ K
Sbjct:   600 NNKILIFCDTK 610

 Score = 118 (46.6 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 46/183 (25%), Positives = 79/183 (43%)

Query:   165 KRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKH 224
             K+S       N   Q  R  +     + + ELG H+   D+  +++   +   N  +N +
Sbjct:   180 KQSKTNYSYDNDYNQGSRNKRNMSYPDRYEELGSHL--KDIEWDNVKYKMERQNLYNNNY 237

Query:   225 EKSGTKIDRGWRSGGSIHNLQYEPTDCP---------KQRHKY-SADGDFFSR-KSFKEL 273
              K     D+   +  S  NL  E T+C          K+ + Y + DG   +    F ++
Sbjct:   238 NKCN---DQN-NNQNSNDNLNNEQTNCLSKEDIQNELKKNNIYINKDGIIHNIINKFSDV 293

Query:   274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR-LRQ 332
              C    I +     F  P+ IQ + +P  + GK  I   ++GSGKTLA++LP     L+ 
Sbjct:   294 -CFHESILNYLNNKFSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHILKH 352

Query:   333 EEL 335
             +E+
Sbjct:   353 KEI 355

 Score = 43 (20.2 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query:   199 HIVDNDVPAESIDKNISDYNSRSNKHEKSGTKID 232
             HI++N    E+ D N +++N+ +N +  +    D
Sbjct:   383 HIINNY--NENNDNNENNHNNNNNNNNNNNNSYD 414


>UNIPROTKB|Q48PB7 [details] [associations]
            symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
            putative" species:264730 "Pseudomonas syringae pv. phaseolicola
            1448A" [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
            KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
            ProtClustDB:CLSK865855 Uniprot:Q48PB7
        Length = 625

 Score = 276 (102.2 bits), Expect = 4.4e-21, P = 4.4e-21
 Identities = 62/199 (31%), Positives = 112/199 (56%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF  LG S+ ++ +++   + +P+ +Q  A P V++G+  ++A Q+G+GKT  + LP+++
Sbjct:     2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query:   329 RLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             RL    +   S+      PRV++L PT ELA+QV  + +  ++  + F S  + GG    
Sbjct:    62 RLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYAR-DLKFVSACIFGGVGMN 120

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q++ +  GVDVL+A PGR + L  +G + L ++   +LDE D +  D  F   ++ +++
Sbjct:   121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRML-DMGFVHDVKKVLA 179

Query:   448 SSPVTAQYLFVTATLPVEI 466
               P   Q L  +AT   +I
Sbjct:   180 RLPAKRQNLLFSATFSNDI 198


>FB|FBgn0035720 [details] [associations]
            symbol:CG10077 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
            EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
            GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
            ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
            RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
            STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
            UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
        Length = 818

 Score = 278 (102.9 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 81/270 (30%), Positives = 128/270 (47%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+E G  DY++  +++Q F +P+ IQA  +P  + G+  +   Q+GSGKTLAY+LP +  
Sbjct:   159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 218

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             +  +    L +     P  ++LAPT ELA Q+              R+  + GG  +  Q
Sbjct:   219 INNQPR--LERGDG--PIALVLAPTRELAQQIQQVAIEFGS-NTHVRNTCIFGGAPKGQQ 273

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
               +L+ GV+++IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++   
Sbjct:   274 ARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRML-DMGFEPQIRKIMQQI 332

Query:   450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
                 Q L  +AT P E+  +L E F +  + +  G   +S      L      Q  D   
Sbjct:   333 RPDRQVLMWSATWPKEV-RQLAEEFLNNYIQVNIGSLSLSAN-HNIL------QIVDVCD 384

Query:   510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             E   L K   LL  I     +KTI+F   K
Sbjct:   385 ENEKLMKLIKLLTDISAENETKTIIFVETK 414


>UNIPROTKB|P21507 [details] [associations]
            symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
            evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
            evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
            EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
            EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
            OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
            PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
            ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
            MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
            EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
            KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
            EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
            BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
            Genevestigator:P21507 Uniprot:P21507
        Length = 444

 Score = 271 (100.5 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 67/194 (34%), Positives = 100/194 (51%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F EL   + ++E+L+ + F RP+ IQA A PP ++G+  + +  +G+GKT AYLLP +Q
Sbjct:     5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              L         +  SG PR++IL PT ELA QV  + R L+K         +TGG     
Sbjct:    65 HLLD-----FPRKKSGPPRILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAYMN 118

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
               E   E  D+++AT GR +  IKE       +   ILDE D +  D  F   ++ +   
Sbjct:   119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRML-DMGFAQDIEHIAGE 177

Query:   449 SPVTAQYLFVTATL 462
             +    Q L  +ATL
Sbjct:   178 TRWRKQTLLFSATL 191

 Score = 156 (60.0 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 58/208 (27%), Positives = 88/208 (42%)

Query:   333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN 392
             + L    +  SG PR++IL PT ELA QV  + R L+K         +TGG       E 
Sbjct:    64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAYMNHAEV 122

Query:   393 LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT 452
               E  D+++AT GR +  IKE       +   ILDE D +  D  F   ++ +   +   
Sbjct:   123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRML-DMGFAQDIEHIAGETRWR 181

Query:   453 AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512
              Q L  +ATL  +      E     +++  P     +P   E          +D      
Sbjct:   182 KQTLLFSATLEGDAIQDFAE-----RLLEDPVEVSANPSTRERKKIHQWYYRADD----- 231

Query:   513 FLNKKSALLQLIEKSP-VSKTIVFCNKK 539
              L  K+ALL  + K P  +++IVF  K+
Sbjct:   232 -LEHKTALLVHLLKQPEATRSIVFVRKR 258


>UNIPROTKB|A7E307 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072358 "cardiovascular system development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
            CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
            GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
            IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
            Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
            InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
        Length = 650

 Score = 276 (102.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 86/297 (28%), Positives = 135/297 (45%)

Query:   246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
             YE  +  +++      GD   +   +F       Y+++ L  Q+F  P+ IQ   FP  +
Sbjct:    68 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 127

Query:   304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
              G+  +   Q+GSGKTLAYLLP I  +  +    L +     P  ++LAPT ELA QV  
Sbjct:   128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 183

Query:   364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
                   KC    +S  + GG  +  Q+ +L+ GV++ IATPGR +  ++ G   L     
Sbjct:   184 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTY 242

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
              +LDE D +  D  FE  ++ ++       Q L  +AT P E+  +L E F      +  
Sbjct:   243 LVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLRDYTQINV 300

Query:   484 GMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             G   +S       +VD   + E D        +K   L++ I     +KTI+F   K
Sbjct:   301 GNLELSANHNILQIVDVCMESEKD--------HKLIQLMEEIMAEKENKTIIFVETK 349


>UNIPROTKB|E2RJ60 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
            Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
        Length = 650

 Score = 276 (102.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 86/297 (28%), Positives = 135/297 (45%)

Query:   246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
             YE  +  +++      GD   +   +F       Y+++ L  Q+F  P+ IQ   FP  +
Sbjct:    68 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 127

Query:   304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
              G+  +   Q+GSGKTLAYLLP I  +  +    L +     P  ++LAPT ELA QV  
Sbjct:   128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 183

Query:   364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
                   KC    +S  + GG  +  Q+ +L+ GV++ IATPGR +  ++ G   L     
Sbjct:   184 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTY 242

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
              +LDE D +  D  FE  ++ ++       Q L  +AT P E+  +L E F      +  
Sbjct:   243 LVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLRDYTQINV 300

Query:   484 GMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             G   +S       +VD   + E D        +K   L++ I     +KTI+F   K
Sbjct:   301 GNLELSANHNILQIVDVCMESEKD--------HKLIQLMEEIMAEKENKTIIFVETK 349


>MGI|MGI:1914290 [details] [associations]
            symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003713 "transcription coactivator activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0009791
            "post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
            evidence=ISO] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0072358 "cardiovascular system
            development" evidence=IMP] [GO:2001014 "regulation of skeletal
            muscle cell differentiation" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
            GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
            GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
            ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
            EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
            RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
            UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
            IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
            REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
            GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
            InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
            CleanEx:MM_DDX17 Genevestigator:Q501J6
            GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
        Length = 650

 Score = 276 (102.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 86/297 (28%), Positives = 135/297 (45%)

Query:   246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
             YE  +  +++      GD   +   +F       Y+++ L  Q+F  P+ IQ   FP  +
Sbjct:    68 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 127

Query:   304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
              G+  +   Q+GSGKTLAYLLP I  +  +    L +     P  ++LAPT ELA QV  
Sbjct:   128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 183

Query:   364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
                   KC    +S  + GG  +  Q+ +L+ GV++ IATPGR +  ++ G   L     
Sbjct:   184 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTY 242

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
              +LDE D +  D  FE  ++ ++       Q L  +AT P E+  +L E F      +  
Sbjct:   243 LVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLRDYTQINV 300

Query:   484 GMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             G   +S       +VD   + E D        +K   L++ I     +KTI+F   K
Sbjct:   301 GNLELSANHNILQIVDVCMESEKD--------HKLIQLMEEIMAEKENKTIIFVETK 349


>DICTYBASE|DDB_G0281925 [details] [associations]
            symbol:DDB_G0281925 "DEAD/DEAH box helicase"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
            EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
            ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
            GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
            Uniprot:Q54T87
        Length = 586

 Score = 275 (101.9 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 96/353 (27%), Positives = 166/353 (47%)

Query:   195 ELGEHIVDNDVPAESIDKNISDYN-SRSNKHEK--SGTKIDRGWR-SGGSIHNLQYEPTD 250
             E  +    +D   ES  K+I   + S   K EK  S +K D+       +  ++   PT+
Sbjct:    34 ESSDESSSSDSEVESKSKSIKKSSKSEEKKSEKKSSSSKEDKEEEVKEETKEDIVLSPTE 93

Query:   251 CPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKR---QNFLRPSQIQAMAFPPVVEGKS 307
               K +H    +G       F++   +DY    + +   Q F  P+ IQ  ++P ++ G  
Sbjct:    94 WRK-KHNVLIEGKS-QPNPFQKF--TDYEFPRMFQHIFQGFTAPTVIQGQSWPIILGGND 149

Query:   308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367
              +    +GSGKTLA+LLP + ++     +    S   +P V+++APT ELA Q+   C++
Sbjct:   150 LVGLAATGSGKTLAFLLPALLKIISLPKR---PSYGATPLVLVMAPTRELAQQIEEVCKT 206

Query:   368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
               + G   R +   GG  +  Q   L+ GVD++I TPGR   L+++    L +++  +LD
Sbjct:   207 SIR-GTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKH--HLSSVQYLVLD 263

Query:   428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMH 486
             E D +  D  F   ++SLI   P   Q L  +AT P E+     +   D  K+ +G    
Sbjct:   264 EADRML-DMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQEL 322

Query:   487 RISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               S  + + +V+   D  SD   +    ++   + +++   P +  IVFCN+K
Sbjct:   323 TGSINVTQHIVNI--DDLSDLQSDDLIYDE---INKILTADPTNTVIVFCNEK 370


>UNIPROTKB|C9JMU5 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
            HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
            STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
            ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
        Length = 652

 Score = 276 (102.2 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 86/297 (28%), Positives = 135/297 (45%)

Query:   246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
             YE  +  +++      GD   +   +F       Y+++ L  Q+F  P+ IQ   FP  +
Sbjct:    68 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 127

Query:   304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
              G+  +   Q+GSGKTLAYLLP I  +  +    L +     P  ++LAPT ELA QV  
Sbjct:   128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 183

Query:   364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
                   KC    +S  + GG  +  Q+ +L+ GV++ IATPGR +  ++ G   L     
Sbjct:   184 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTY 242

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
              +LDE D +  D  FE  ++ ++       Q L  +AT P E+  +L E F      +  
Sbjct:   243 LVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLRDYTQINV 300

Query:   484 GMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             G   +S       +VD   + E D        +K   L++ I     +KTI+F   K
Sbjct:   301 GNLELSANHNILQIVDVCMESEKD--------HKLIQLMEEIMAEKENKTIIFVETK 349


>UNIPROTKB|Q9KMW4 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 271 (100.5 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 65/197 (32%), Positives = 105/197 (53%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F  LG S  ++++++ + +  PS IQ  A P V+ GK  + A Q+G+GKT  + LP+++ 
Sbjct:     3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L +    G  K  +   R +IL PT ELA+Q+  N     +  +P +S VV GG +   Q
Sbjct:    63 LAK----G-PKVRANQVRALILTPTRELAAQIQDNVMLYGR-HLPLKSAVVFGGVKINPQ 116

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             ++ + +G D+L+ATPGR M L  +  ++   L   +LDE D +  D  F   +  ++   
Sbjct:   117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRML-DMGFIRDIHKILKLL 175

Query:   450 PVTAQYLFVTATLPVEI 466
             P   Q L  +AT   EI
Sbjct:   176 PEKRQNLLFSATFSTEI 192


>TIGR_CMR|VC_A0204 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 271 (100.5 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 65/197 (32%), Positives = 105/197 (53%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F  LG S  ++++++ + +  PS IQ  A P V+ GK  + A Q+G+GKT  + LP+++ 
Sbjct:     3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L +    G  K  +   R +IL PT ELA+Q+  N     +  +P +S VV GG +   Q
Sbjct:    63 LAK----G-PKVRANQVRALILTPTRELAAQIQDNVMLYGR-HLPLKSAVVFGGVKINPQ 116

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             ++ + +G D+L+ATPGR M L  +  ++   L   +LDE D +  D  F   +  ++   
Sbjct:   117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRML-DMGFIRDIHKILKLL 175

Query:   450 PVTAQYLFVTATLPVEI 466
             P   Q L  +AT   EI
Sbjct:   176 PEKRQNLLFSATFSTEI 192


>RGD|1311758 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
            evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
            "defense response to virus" evidence=IEA;ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
            RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
            Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
            UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
            Uniprot:B2RYL8
        Length = 622

 Score = 275 (101.9 bits), Expect = 5.7e-21, P = 5.7e-21
 Identities = 94/319 (29%), Positives = 153/319 (47%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
             I   W     + ++  E  +  ++++    +GD      KSFKE+     ++  LK++  
Sbjct:   142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGI 201

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
             L P+ IQ    P ++ G+  I    +GSGKTL + LPVI    ++E + L  S    P  
Sbjct:   202 LHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260

Query:   349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
             +I+ P+ ELA Q   +L   CR L +   P  R  +  GG   K Q+E ++ GV +++AT
Sbjct:   261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             PGR M L+++ ++ L   R   LDE D +  D  FE  ++++ S      Q L  +AT+P
Sbjct:   321 PGRLMDLLQKKMVSLDICRYLALDEADRMI-DMGFEGDIRTIFSYFKGQRQTLLFSATMP 379

Query:   464 VEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
              +I N  K   V P   V +  G  R      + +      QE +   E A   K   LL
Sbjct:   380 KKIQNFAKSALVKP---VTINVG--RAGAASLDVI------QEVEYVKEEA---KMVYLL 425

Query:   522 QLIEKSPVSKTIVFCNKKS 540
             + ++K+P    ++F  KK+
Sbjct:   426 ECLQKTP-PPVLIFAEKKA 443


>UNIPROTKB|Q92841 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0003713 "transcription coactivator activity" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0033148 "positive
            regulation of intracellular estrogen receptor signaling pathway"
            evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
            skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
            EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
            GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
            EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
            IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
            RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
            ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
            MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
            REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
            DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
            UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
            HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
            HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
            GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
            CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
            GO:GO:2001014 Uniprot:Q92841
        Length = 729

 Score = 276 (102.2 bits), Expect = 6.2e-21, P = 6.2e-21
 Identities = 86/297 (28%), Positives = 135/297 (45%)

Query:   246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
             YE  +  +++      GD   +   +F       Y+++ L  Q+F  P+ IQ   FP  +
Sbjct:   147 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 206

Query:   304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
              G+  +   Q+GSGKTLAYLLP I  +  +    L +     P  ++LAPT ELA QV  
Sbjct:   207 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 262

Query:   364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
                   KC    +S  + GG  +  Q+ +L+ GV++ IATPGR +  ++ G   L     
Sbjct:   263 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTY 321

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
              +LDE D +  D  FE  ++ ++       Q L  +AT P E+  +L E F      +  
Sbjct:   322 LVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLRDYTQINV 379

Query:   484 GMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             G   +S       +VD   + E D        +K   L++ I     +KTI+F   K
Sbjct:   380 GNLELSANHNILQIVDVCMESEKD--------HKLIQLMEEIMAEKENKTIIFVETK 428


>UNIPROTKB|H3BLZ8 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
            "post-embryonic development" evidence=IEA] [GO:0072358
            "cardiovascular system development" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
            ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
            Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
        Length = 731

 Score = 276 (102.2 bits), Expect = 6.2e-21, P = 6.2e-21
 Identities = 86/297 (28%), Positives = 135/297 (45%)

Query:   246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
             YE  +  +++      GD   +   +F       Y+++ L  Q+F  P+ IQ   FP  +
Sbjct:   147 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 206

Query:   304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
              G+  +   Q+GSGKTLAYLLP I  +  +    L +     P  ++LAPT ELA QV  
Sbjct:   207 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 262

Query:   364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
                   KC    +S  + GG  +  Q+ +L+ GV++ IATPGR +  ++ G   L     
Sbjct:   263 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTY 321

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
              +LDE D +  D  FE  ++ ++       Q L  +AT P E+  +L E F      +  
Sbjct:   322 LVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLRDYTQINV 379

Query:   484 GMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             G   +S       +VD   + E D        +K   L++ I     +KTI+F   K
Sbjct:   380 GNLELSANHNILQIVDVCMESEKD--------HKLIQLMEEIMAEKENKTIIFVETK 428


>UNIPROTKB|Q9NXZ2 [details] [associations]
            symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
            IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
            ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
            PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
            Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
            CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
            HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
            InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
            ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
            Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
            GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
        Length = 648

 Score = 275 (101.9 bits), Expect = 6.2e-21, P = 6.2e-21
 Identities = 83/266 (31%), Positives = 132/266 (49%)

Query:   275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
             C   ++E++K+  F +P+ IQ+ A+P V++G   I   Q+G+GKTL YL+P    L    
Sbjct:   249 CYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL---V 305

Query:   335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
             LQ   K     P +++L PT ELA QV   C   S  G+  RS+ V GG  +  Q+E L+
Sbjct:   306 LQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGL--RSVCVYGGGNRDEQIEELK 363

Query:   395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454
             +GVD++IATPGR   L     + L N+   +LDE D +  D  FE  +  ++       Q
Sbjct:   364 KGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKML-DMGFEPQIMKILLDVRPDRQ 422

Query:   455 YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
              +  +AT P  ++ +L + +     +  P +  +  G  + +   S  Q    T E    
Sbjct:   423 TVMTSATWPHSVH-RLAQSY-----LKEPMI--VYVGTLDLVAVSSVKQNIIVTTEEEKW 474

Query:   515 NKKSALLQLIEKSPVSKTIVFCNKKS 540
             +     LQ +  S   K IVF ++K+
Sbjct:   475 SHMQTFLQSM--SSTDKVIVFVSRKA 498


>UNIPROTKB|F1PID8 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
            Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
        Length = 736

 Score = 276 (102.2 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 86/297 (28%), Positives = 135/297 (45%)

Query:   246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
             YE  +  +++      GD   +   +F       Y+++ L  Q+F  P+ IQ   FP  +
Sbjct:   149 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 208

Query:   304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
              G+  +   Q+GSGKTLAYLLP I  +  +    L +     P  ++LAPT ELA QV  
Sbjct:   209 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 264

Query:   364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
                   KC    +S  + GG  +  Q+ +L+ GV++ IATPGR +  ++ G   L     
Sbjct:   265 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTY 323

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
              +LDE D +  D  FE  ++ ++       Q L  +AT P E+  +L E F      +  
Sbjct:   324 LVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLRDYTQINV 381

Query:   484 GMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             G   +S       +VD   + E D        +K   L++ I     +KTI+F   K
Sbjct:   382 GNLELSANHNILQIVDVCMESEKD--------HKLIQLMEEIMAEKENKTIIFVETK 430


>UNIPROTKB|F1SKQ0 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0072358 "cardiovascular system development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
            EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
        Length = 736

 Score = 276 (102.2 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 86/297 (28%), Positives = 135/297 (45%)

Query:   246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
             YE  +  +++      GD   +   +F       Y+++ L  Q+F  P+ IQ   FP  +
Sbjct:   149 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 208

Query:   304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
              G+  +   Q+GSGKTLAYLLP I  +  +    L +     P  ++LAPT ELA QV  
Sbjct:   209 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 264

Query:   364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
                   KC    +S  + GG  +  Q+ +L+ GV++ IATPGR +  ++ G   L     
Sbjct:   265 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTY 323

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
              +LDE D +  D  FE  ++ ++       Q L  +AT P E+  +L E F      +  
Sbjct:   324 LVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLRDYTQINV 381

Query:   484 GMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             G   +S       +VD   + E D        +K   L++ I     +KTI+F   K
Sbjct:   382 GNLELSANHNILQIVDVCMESEKD--------HKLIQLMEEIMAEKENKTIIFVETK 430


>MGI|MGI:1920185 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
            response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
            RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
            SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
            PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
            KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
            CleanEx:MM_DDX41 Genevestigator:Q91VN6
            GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
        Length = 622

 Score = 274 (101.5 bits), Expect = 7.3e-21, P = 7.3e-21
 Identities = 94/319 (29%), Positives = 153/319 (47%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
             I   W     + ++  E  +  ++++    +GD      KSFKE+     ++  LK++  
Sbjct:   142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 201

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
             L P+ IQ    P ++ G+  I    +GSGKTL + LPVI    ++E + L  S    P  
Sbjct:   202 LHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260

Query:   349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
             +I+ P+ ELA Q   +L   CR L +   P  R  +  GG   K Q+E ++ GV +++AT
Sbjct:   261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             PGR M L+++ ++ L   R   LDE D +  D  FE  ++++ S      Q L  +AT+P
Sbjct:   321 PGRLMDLLQKKMVSLDICRYLALDEADRMI-DMGFEGDIRTIFSYFKGQRQTLLFSATMP 379

Query:   464 VEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
              +I N  K   V P   V +  G  R      + +      QE +   E A   K   LL
Sbjct:   380 KKIQNFAKSALVKP---VTINVG--RAGAASLDVI------QEVEYVKEEA---KMVYLL 425

Query:   522 QLIEKSPVSKTIVFCNKKS 540
             + ++K+P    ++F  KK+
Sbjct:   426 ECLQKTP-PPVLIFAEKKA 443


>TAIR|locus:2152099 [details] [associations]
            symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
            EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
            RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
            ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
            EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
            GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
            PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
            GermOnline:AT5G65900 Uniprot:Q9SB89
        Length = 633

 Score = 274 (101.5 bits), Expect = 7.6e-21, P = 7.6e-21
 Identities = 69/216 (31%), Positives = 122/216 (56%)

Query:   253 KQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD 312
             K+  K   +    + K+F+ L  SD   +S+K   F R +QIQA A PP++ G+  + A 
Sbjct:   139 KEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAA 198

Query:   313 QSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372
             ++GSGKTLA+L+P ++ L + +     ++ +G   V+++ PT ELA Q     + L K  
Sbjct:   199 RTGSGKTLAFLIPAVELLYRVKFT--PRNGTG---VLVICPTRELAIQSYGVAKELLKYH 253

Query:   373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVD 430
                   V+ GG ++KT+ E L +GV++L+ATPGR +  ++   G +   NL+  ++DE D
Sbjct:   254 SQTVGKVI-GGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFI-FKNLKFLVMDEAD 311

Query:   431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              +  +++FE  L+ +++  P T Q    +AT   ++
Sbjct:   312 RIL-EQNFEEDLKKILNLLPKTRQTSLFSATQSAKV 346


>ASPGD|ASPL0000006660 [details] [associations]
            symbol:AN5931 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
            EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
            ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
            EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
            OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
        Length = 563

 Score = 271 (100.5 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 66/199 (33%), Positives = 104/199 (52%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             ++F E G   Y++  +K Q F +P+ IQ+  +P  + G+  +   ++GSGKTL+Y LP I
Sbjct:   140 ETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAI 199

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               +  + L     +    P V+ILAPT ELA Q+ +      K     R+  V GG  + 
Sbjct:   200 VHINAQPLL----APGDGPIVLILAPTRELAVQIQAEISKFGKSS-RIRNTCVYGGVPKG 254

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q+ +L  GV+V IATPGR + +++ G   L  +   +LDE D +  D  FE  ++ +IS
Sbjct:   255 PQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML-DMGFEPQIRKIIS 313

Query:   448 SSPVTAQYLFVTATLPVEI 466
                   Q    +AT P E+
Sbjct:   314 QIRPDRQTCMWSATWPKEV 332


>UNIPROTKB|Q0C4B9 [details] [associations]
            symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
            GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
            BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
        Length = 536

 Score = 270 (100.1 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 74/242 (30%), Positives = 123/242 (50%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F + G ++ +++++    +  P+ IQ  A P ++ G       Q+G+GKT A++LP+IQ
Sbjct:     5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             RL         ++ +  PR +IL PT ELA+QV  N     K  +     ++ GG   K 
Sbjct:    65 RL------STGRARARMPRCLILCPTRELAAQVAENFEKYGKY-LKLTMALLIGGVSFKE 117

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q   LQ GVDVLIATPGR M     G L ++ +   I+DE D +  D  F   ++ + + 
Sbjct:   118 QETLLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRML-DMGFIPDIEKICAK 176

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRISPGLEEFLVDC-SGDQESD 506
              P   Q L  +AT P +I  +L + F  D K +      + +  + +F+V   + D ++ 
Sbjct:   177 LPANRQTLLFSATFPTDI-QRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKAR 235

Query:   507 KT 508
             +T
Sbjct:   236 RT 237

 Score = 221 (82.9 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 68/208 (32%), Positives = 103/208 (49%)

Query:   335 LQGLS--KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN 392
             +Q LS  ++ +  PR +IL PT ELA+QV  N     K  +     ++ GG   K Q   
Sbjct:    63 IQRLSTGRARARMPRCLILCPTRELAAQVAENFEKYGKY-LKLTMALLIGGVSFKEQETL 121

Query:   393 LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT 452
             LQ GVDVLIATPGR M     G L ++ +   I+DE D +  D  F   ++ + +  P  
Sbjct:   122 LQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRML-DMGFIPDIEKICAKLPAN 180

Query:   453 AQYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET 511
              Q L  +AT P +I  +L + F  D K +      + +  + +F+V         K P  
Sbjct:   181 RQTLLFSATFPTDI-QRLAKTFQKDPKKIEVTRPAQTAETISQFVV---------KLPTN 230

Query:   512 AFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                 +++AL ++IE + V   IVFCN+K
Sbjct:   231 DGKARRTALRRVIEATNVKNGIVFCNRK 258


>RGD|1559513 [details] [associations]
            symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
            IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
            NextBio:667517 Uniprot:D4ADJ9
        Length = 621

 Score = 271 (100.5 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 93/319 (29%), Positives = 152/319 (47%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
             I   W     + ++  E  +  ++++    +GD      KSFKE+     ++  LK++  
Sbjct:   141 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGI 200

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
             L P+ IQ    P ++ G+  I    +GSGKTL + LPVI    ++E + L  S    P  
Sbjct:   201 LHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 259

Query:   349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
             +I+ P+ ELA Q   +L   CR L +   P     +  GG   K Q+E ++ GV +++AT
Sbjct:   260 LIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVAT 319

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             PGR M L+++ ++ L   R   LDE D +  D  FE  ++++ S      Q L  +AT+P
Sbjct:   320 PGRLMDLLQKKMVSLDICRYLALDEADRMI-DMGFEGDIRTIFSYFKGQRQTLLFSATMP 378

Query:   464 VEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
              +I N  K   V P   V +  G  R      + +      QE +   E A   K   LL
Sbjct:   379 KKIQNFAKSALVKP---VTINVG--RAGAASLDVI------QEVEYVKEEA---KMVYLL 424

Query:   522 QLIEKSPVSKTIVFCNKKS 540
             + ++K+P    ++F  KK+
Sbjct:   425 ECLQKTP-PPVLIFAKKKA 442


>TIGR_CMR|GSU_0914 [details] [associations]
            symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
            GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
            ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
            PATRIC:22024603 ProtClustDB:CLSK924451
            BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
        Length = 447

 Score = 266 (98.7 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 65/207 (31%), Positives = 107/207 (51%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             FK  G    +   +    +  P+ IQA A P V+ G+  +   Q+G+GKT A+ LP++ R
Sbjct:     3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHR 62

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L+Q E         G  R +++APT ELA Q+  +  +L +     RS+ V GG     Q
Sbjct:    63 LQQGE--------RGRVRALVIAPTRELAEQINDSFVTLGR-QTRLRSVTVYGGVGVNPQ 113

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             ++ L+ G +V++A PGR +  I +G + L  L   +LDE D +F D  F   ++ ++   
Sbjct:   114 VQKLKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMF-DMGFLPDIRRVLKHL 172

Query:   450 PVTAQYLFVTATLPVEIYNKLVEVFPD 476
             P   Q L  +AT+P++I     ++  D
Sbjct:   173 PPRRQTLLFSATMPIDIRTLAQDILVD 199


>UNIPROTKB|Q4K4H4 [details] [associations]
            symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
            EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
            ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
            PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
        Length = 622

 Score = 270 (100.1 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 62/199 (31%), Positives = 111/199 (55%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF  LG S+ ++ +++   + +P+ +Q  A P V++G+  ++A Q+G+GKT  + LP+++
Sbjct:     2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query:   329 RLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             RL        S+      PRV++L PT ELA+QV  + +  ++  + F S  + GG    
Sbjct:    62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYAR-DLKFVSACIFGGVGMN 120

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q++ +  GVDVL+A PGR + L  +G + L ++   +LDE D +  D  F   ++ +++
Sbjct:   121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRML-DMGFVHDVKKVLA 179

Query:   448 SSPVTAQYLFVTATLPVEI 466
               P   Q L  +AT   +I
Sbjct:   180 RLPAKRQNLLFSATFSKDI 198


>WB|WBGene00019245 [details] [associations]
            symbol:sacy-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
            GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
            OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
            ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
            EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
            UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
            NextBio:875413 Uniprot:Q9N5K1
        Length = 630

 Score = 270 (100.1 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 87/335 (25%), Positives = 166/335 (49%)

Query:   154 LKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSL-ENFREL--GEHIVDNDVPAESI 210
             ++ +R K   DK+S   +KT+  L++   + +T   + E+ R+L   E ++D       +
Sbjct:    77 IERKRKKKEEDKQSEEARKTL--LEKHAEIMETQGVIDESERQLMEEEELLDKVTRGGGL 134

Query:   211 DKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRK-- 268
                +++  ++  K+E+    I   WR  G I     E  +  ++R   S +GD       
Sbjct:   135 -LAVAEL-TKGEKYEEP---IVTAWRPPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIG 189

Query:   269 SFKELGCSDYMIESLKRQN-FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             SF E+     ++E +++Q   + P+ IQ    P  + G+  I    +GSGKT+ ++LP++
Sbjct:   190 SFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLV 249

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQV----LSNCRSLSKCGVP-FRSMVVTG 382
                 ++E++ L    S  P  +I+ P+ ELA Q+    +    +L K G+P  R+ +  G
Sbjct:   250 MFCLEQEMK-LPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIG 308

Query:   383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
             G     Q +++++G+ +++ATPGR   ++ + I+ L   R  +LDE D +  D  FE  +
Sbjct:   309 GVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRML-DMGFEDEI 367

Query:   443 QSLISSSPVTAQYLFVTATLP--VEIYNKLVEVFP 475
             +S+        Q L  +AT+P  ++ + K   V P
Sbjct:   368 KSIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKP 402


>POMBASE|SPAC31A2.07c [details] [associations]
            symbol:dbp10 "ATP-dependent RNA helicase Dbp10
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
            EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
            ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
            GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
            Uniprot:Q09719
        Length = 848

 Score = 272 (100.8 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 78/274 (28%), Positives = 136/274 (49%)

Query:   190 LENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPT 249
             +  F+   E  + N + A  +D  I+  N + +KHE  G  +      G  I +   E  
Sbjct:     1 MSGFQTSDEVDISNSLKAFPVD--IATDNQK-DKHENVGENVSDE-DDGNYIASKLLESN 56

Query:   250 DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309
                K +     +G      +F+ +G +  ++ ++ ++ F  P+ IQ    P ++EG+  +
Sbjct:    57 RRTKGK---KGNG---KASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110

Query:   310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
                ++GSGKT A+++P+I+ L+      L+ S +   R +IL+P  ELA Q +   +  S
Sbjct:   111 GMARTGSGKTAAFVIPMIEHLKST----LANSNT---RALILSPNRELALQTVKVVKDFS 163

Query:   370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429
             K G   RS+ + GG   + Q   L    D+++ATPGRF+ L  E  L+L ++   + DE 
Sbjct:   164 K-GTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEA 222

Query:   430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             D LF +  F   L  ++ + P + Q L  +ATLP
Sbjct:   223 DRLF-EMGFAAQLTEILHALPTSRQTLLFSATLP 255


>UNIPROTKB|Q9NUL7 [details] [associations]
            symbol:DDX28 "Probable ATP-dependent RNA helicase DDX28"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 GO:GO:0042645 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:AF329821 EMBL:AK002144
            EMBL:AC130462 EMBL:BC024273 IPI:IPI00020050 RefSeq:NP_060850.2
            UniGene:Hs.458313 ProteinModelPortal:Q9NUL7 SMR:Q9NUL7
            IntAct:Q9NUL7 PhosphoSite:Q9NUL7 DMDM:296434476 PaxDb:Q9NUL7
            PRIDE:Q9NUL7 Ensembl:ENST00000332395 GeneID:55794 KEGG:hsa:55794
            UCSC:uc002evh.2 CTD:55794 GeneCards:GC16M068055 HGNC:HGNC:17330
            HPA:HPA041911 MIM:607618 neXtProt:NX_Q9NUL7 PharmGKB:PA27214
            HOGENOM:HOG000008689 HOVERGEN:HBG081424 InParanoid:Q9NUL7
            OMA:RARRDHF OrthoDB:EOG42RD7H PhylomeDB:Q9NUL7 GenomeRNAi:55794
            NextBio:60915 Bgee:Q9NUL7 CleanEx:HS_DDX28 Genevestigator:Q9NUL7
            GermOnline:ENSG00000182810 Uniprot:Q9NUL7
        Length = 540

 Score = 268 (99.4 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 98/331 (29%), Positives = 153/331 (46%)

Query:   228 GTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ- 286
             G K  R  R   SI   Q E    P  R K S+ G      SF +LG    ++ +L+   
Sbjct:    96 GWKSRRARRDHFSIERAQQE---APAVR-KLSSKG------SFADLGLEPRVLHALQEAA 145

Query:   287 -NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345
                ++P+ +Q+   P ++ G+  + A ++GSGKTL+YLLP++QRL  +    L      +
Sbjct:   146 PEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQP--SLDSLPIPA 203

Query:   346 PRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIAT 403
             PR ++L P+ ELA QV +  + L +  G+  R +    G R+ + QL   Q   DVL+AT
Sbjct:   204 PRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSR-QPSADVLVAT 262

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA---LQ-SLISSSPVT------- 452
             PG     +K  ++ L  L   +LDE D L ++   E+    L+ S I+  P         
Sbjct:   263 PGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNP 322

Query:   453 -AQYLFVTATLPVEIYNKLVEVF-PDC-KVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
              AQ + V AT P  +   L +V  PD    +    +H I P +++  +   G   +DK  
Sbjct:   323 KAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLKG---ADKVA 379

Query:   510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
             E   + K     +     P    +VFCN  S
Sbjct:   380 ELVHILKHRDRAE--RTGPSGTVLVFCNSSS 408


>SGD|S000005730 [details] [associations]
            symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
            helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
            "translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
            [GO:0033592 "RNA strand annealing activity" evidence=IDA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
            EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
            EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
            RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
            DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
            PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
            GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
            KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
            GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
        Length = 604

 Score = 269 (99.8 bits), Expect = 2.5e-20, P = 2.5e-20
 Identities = 80/272 (29%), Positives = 129/272 (47%)

Query:   279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL------RQ 332
             ++E++K   F +P+ +Q  + P V  G+  +   Q+GSGKT  +L PV+          Q
Sbjct:   153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212

Query:   333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKTQLE 391
              E QG        P  VI+APT ELA+Q+    +  + +  V  ++ VV GG     QL 
Sbjct:   213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWV--KACVVYGGSPIGNQLR 270

Query:   392 NLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV 451
              ++ G D+L+ATPGR   L++ G + L N++  +LDE D +  D  FE  ++ ++    +
Sbjct:   271 EIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRML-DMGFEPQIRHIVEDCDM 329

Query:   452 TA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
             T     Q L  +AT P +I + L   F    + +  G            V  + +  + K
Sbjct:   330 TPVGERQTLMFSATFPADIQH-LARDFLSDYIFLSVGR-----------VGSTSENITQK 377

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                    +KKSALL L+  S    T++F   K
Sbjct:   378 VLYVENQDKKSALLDLLSASTDGLTLIFVETK 409


>UNIPROTKB|F1NA53 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
            IPI:IPI00684751 ProteinModelPortal:F1NA53
            Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
        Length = 402

 Score = 262 (97.3 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 68/205 (33%), Positives = 105/205 (51%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+ELG + +++E  ++    RP+ +QA   PP+++G+ C+   ++GSGKT A++LPV+Q
Sbjct:     3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 62

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              L  E+  G+          ++L PT ELA Q+    R L K  +  +  VV GG     
Sbjct:    63 VL-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCVVVGGLDMVA 112

Query:   389 QLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSL 445
             Q   L     V+IATPGR    L       L  L+  +LDE D L      DF   L+ +
Sbjct:   113 QALELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVI 172

Query:   446 ISSSPVTAQYLFVTATLPVEIYNKL 470
             + + P   Q L  +ATL  +  N+L
Sbjct:   173 LEAVPARRQTLLFSATL-TDTLNEL 196


>TAIR|locus:2162022 [details] [associations]
            symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
            EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
            IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
            UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
            PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
            KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
            OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
            Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
        Length = 591

 Score = 268 (99.4 bits), Expect = 3.0e-20, P = 3.0e-20
 Identities = 83/275 (30%), Positives = 137/275 (49%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K F++    D ++E++ +  F  P+ IQA  +P  ++G+  I   ++GSGKTLAYLLP +
Sbjct:   165 KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
               +  +   G        P V+ILAPT ELA Q+    R    + GV  RS  + GG  +
Sbjct:   225 VHVSAQPRLG----QDDGPIVLILAPTRELAVQIQEESRKFGLRSGV--RSTCIYGGAPK 278

Query:   387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
               Q+ +L+ GV+++IATPGR + +++     L  +   +LDE D +  D  FE  ++ ++
Sbjct:   279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRML-DMGFEPQIRKIV 337

Query:   447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQES 505
             S      Q L  +AT P E+     +   D  K ++G    + +  + + +       E 
Sbjct:   338 SQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVI-------EI 390

Query:   506 DKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
               TPE    N+   LL QL++ S   K ++F   K
Sbjct:   391 VPTPEK--YNRLLTLLKQLMDGS---KILIFVETK 420


>SGD|S000005056 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
            protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
            "nuclear polyadenylation-dependent mRNA catabolic process"
            evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
            ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
            "rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
            RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
            SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
            STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
            GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
            CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
            Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
        Length = 546

 Score = 267 (99.0 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 76/272 (27%), Positives = 130/272 (47%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E G  DY++  +K + F +P+ IQ   +P  + G+  +    +GSGKTL+Y LP I 
Sbjct:   114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  + L     +    P V++LAPT ELA Q+ + C          R+  V GG  +  
Sbjct:   174 HINAQPLL----APGDGPIVLVLAPTRELAVQIQTECSKFGHSS-RIRNTCVYGGVPKSQ 228

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L  G +++IATPGR + +++ G   L  +   +LDE D +  D  FE  ++ ++  
Sbjct:   229 QIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVDQ 287

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
                  Q L  +AT P E+     +   D  +V +G      S  + + +   S  ++ D+
Sbjct:   288 IRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDR 347

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                   LNK    L+   +    KT++F + K
Sbjct:   348 ------LNK---YLETASQDNEYKTLIFASTK 370


>TAIR|locus:2828586 [details] [associations]
            symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
            EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
            RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
            UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
            PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
            EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
            GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
            ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
        Length = 505

 Score = 266 (98.7 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 67/202 (33%), Positives = 111/202 (54%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F   G    ++ +L+   +  P+ IQ  A P  + GKS + +  +GSGKT ++L+P+I 
Sbjct:   111 TFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIIS 170

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             R      +  S     +P  ++LAPT EL  QV    + L K G+PF++ +V GG     
Sbjct:   171 RCTTYHSEHPSDQRR-NPLAMVLAPTRELCVQVEDQAKMLGK-GLPFKTALVVGGDPMSG 228

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
             QL  +Q+GV+++I TPGR + L+ +  ++L N+   +LDEVD +    F D+  ++  Q+
Sbjct:   229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQI-FQA 287

Query:   445 LISSSPVTAQYLFVTATLPVEI 466
             L  S P   Q L  +AT+  E+
Sbjct:   288 L--SQP---QVLLFSATISREV 304


>UNIPROTKB|Q47Z59 [details] [associations]
            symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
            "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 264 (98.0 bits), Expect = 3.3e-20, P = 3.3e-20
 Identities = 67/194 (34%), Positives = 103/194 (53%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F + G    ++ +++   F  P+QIQ  A P  + G   I + ++GSGKTLA+++P +QR
Sbjct:     3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L +   + LSK     PRVVIL PT ELA QV S  R L      ++++++ GG     Q
Sbjct:    63 LSKN--RALSKR---DPRVVILTPTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQ 116

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             ++ LQ+  + ++ATPGR    + +G   L  L   ILDE D +  D  F   L  +  ++
Sbjct:   117 VKVLQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRML-DLGFSKELTQINKAA 175

Query:   450 PVTA-QYLFVTATL 462
                  Q L  +ATL
Sbjct:   176 DHRKRQTLLFSATL 189


>TIGR_CMR|CPS_3215 [details] [associations]
            symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
            "RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 264 (98.0 bits), Expect = 3.3e-20, P = 3.3e-20
 Identities = 67/194 (34%), Positives = 103/194 (53%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F + G    ++ +++   F  P+QIQ  A P  + G   I + ++GSGKTLA+++P +QR
Sbjct:     3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L +   + LSK     PRVVIL PT ELA QV S  R L      ++++++ GG     Q
Sbjct:    63 LSKN--RALSKR---DPRVVILTPTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQ 116

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             ++ LQ+  + ++ATPGR    + +G   L  L   ILDE D +  D  F   L  +  ++
Sbjct:   117 VKVLQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRML-DLGFSKELTQINKAA 175

Query:   450 PVTA-QYLFVTATL 462
                  Q L  +ATL
Sbjct:   176 DHRKRQTLLFSATL 189


>TIGR_CMR|GSU_0491 [details] [associations]
            symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
            KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
            BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
        Length = 450

 Score = 264 (98.0 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 66/194 (34%), Positives = 101/194 (52%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F EL  + ++++++    +  P+ +QA A P  +E    +   Q+G+GKT A++LP +Q
Sbjct:     2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             RL     QG  +     PRV++L PT ELA QV    R+     +  RS  + GG     
Sbjct:    62 RLSSPP-QGPGRG----PRVLVLTPTRELAQQVTDAVRTYGAF-MRVRSGAILGGMPYHA 115

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             QL  L   VD ++ATPGR + L+    L L  L   +LDE D +  D  F   +  + ++
Sbjct:   116 QLRLLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRML-DMGFSDDVDRIAAA 174

Query:   449 SPVTAQYLFVTATL 462
             SP T Q L  TAT+
Sbjct:   175 SPATRQTLLFTATM 188


>TIGR_CMR|CPS_1418 [details] [associations]
            symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
            GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
            BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
        Length = 401

 Score = 261 (96.9 bits), Expect = 3.7e-20, P = 3.7e-20
 Identities = 72/230 (31%), Positives = 119/230 (51%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF  L  S  ++ ++    + +P+ IQ  A P V+ GK  I A Q+G+GKT +++LP+++
Sbjct:     2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             +L  +  +   K  +   R +IL PT ELA QV ++    +K  +   SM + GG   + 
Sbjct:    62 QLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKY-LDISSMAMYGGVDAQE 120

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q + L  GVD+L+ATPGR + +  + +L    L   +LDE D +  D  F   +  +I  
Sbjct:   121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRML-DMGFIDDINKIIER 179

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLV 497
              P   Q L  +AT+  E+   L +      V +  G  + S P +E++LV
Sbjct:   180 LPEHRQNLLFSATMSEEVRG-LAKRTIHKPVEISIGADKASKPKIEQWLV 228


>UNIPROTKB|F1SUG8 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
            EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
        Length = 737

 Score = 269 (99.8 bits), Expect = 3.9e-20, P = 3.9e-20
 Identities = 80/279 (28%), Positives = 141/279 (50%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F     S+  I+ LK +       IQ   F PV EGK  I   ++G+GKT ++ +P+I+
Sbjct:   138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             RL++ + + + KS S  P+V++LAPT ELA+QV  + + ++K           GG   ++
Sbjct:   198 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITK---KLSVACFYGGTSYQS 251

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
             Q+ +++ G+D+L+ TPGR    ++ G L L  LR  +LDEVD +    F ++  ++  +S
Sbjct:   252 QINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHES 311

Query:   445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEEFLVDCS 500
               + S    Q L  +AT P  +Y K+ + +   +     ++G    + +  +E   + C 
Sbjct:   312 YKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 370

Query:   501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               Q     P  A +     +LQ+   S   + I+FC  K
Sbjct:   371 WSQR----P--AVIGD---VLQVYSGSE-GRAIIFCETK 399


>UNIPROTKB|Q8EE19 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 264 (98.0 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 67/236 (28%), Positives = 116/236 (49%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F +LG    +++++    +  P+ IQ  A P ++ GK+ + A Q+G+GKT +++LP++ R
Sbjct:     3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
                       K      R +IL PT ELA QV  N    +K  +P  +M + GG     Q
Sbjct:    63 FADAP-----KIRPKRVRSIILTPTRELALQVEQNINQYAKY-LPLTAMAMYGGVDAAPQ 116

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
              + L EGVD+L+ATPGR + +  +  ++   +   +LDE D +  D  F   + ++I   
Sbjct:   117 KKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRML-DMGFIEDINNIIEKL 175

Query:   450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
             P   Q L  +ATL  ++        PD   +     +  S  ++++L     D++S
Sbjct:   176 PEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKS 231


>TIGR_CMR|SO_2571 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 264 (98.0 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 67/236 (28%), Positives = 116/236 (49%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F +LG    +++++    +  P+ IQ  A P ++ GK+ + A Q+G+GKT +++LP++ R
Sbjct:     3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
                       K      R +IL PT ELA QV  N    +K  +P  +M + GG     Q
Sbjct:    63 FADAP-----KIRPKRVRSIILTPTRELALQVEQNINQYAKY-LPLTAMAMYGGVDAAPQ 116

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
              + L EGVD+L+ATPGR + +  +  ++   +   +LDE D +  D  F   + ++I   
Sbjct:   117 KKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRML-DMGFIEDINNIIEKL 175

Query:   450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
             P   Q L  +ATL  ++        PD   +     +  S  ++++L     D++S
Sbjct:   176 PEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKS 231


>UNIPROTKB|A3KN07 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
            RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
            Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
            InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
        Length = 622

 Score = 267 (99.0 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 93/319 (29%), Positives = 152/319 (47%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
             I   W     + ++  E  +  ++++    +GD      KSFKE+     ++  LK++  
Sbjct:   142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 201

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
               P+ IQ    P ++ G+  I    +GSGKTL + LPVI    ++E + L  S    P  
Sbjct:   202 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260

Query:   349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
             +I+ P+ ELA Q   +L   CR L +   P  R  +  GG   K Q+E ++ GV +++AT
Sbjct:   261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             PGR M L+++ ++ L   R   LDE D +  D  FE  ++++ S      Q L  +AT+P
Sbjct:   321 PGRLMDLLQKKMVSLDICRYLALDEADRMI-DMGFEGDIRTIFSYFKGQRQTLLFSATMP 379

Query:   464 VEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
              +I N  K   V P   V +  G  R      + +      QE +   E A   K   LL
Sbjct:   380 KKIQNFAKSALVKP---VTINVG--RAGAASLDVI------QEVEYVKEEA---KMVYLL 425

Query:   522 QLIEKSPVSKTIVFCNKKS 540
             + ++K+P    ++F  KK+
Sbjct:   426 ECLQKTP-PPVLIFAEKKA 443


>UNIPROTKB|E2R052 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
            RefSeq:XP_536417.2 ProteinModelPortal:E2R052
            Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
            NextBio:20854482 Uniprot:E2R052
        Length = 622

 Score = 267 (99.0 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 93/319 (29%), Positives = 152/319 (47%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
             I   W     + ++  E  +  ++++    +GD      KSFKE+     ++  LK++  
Sbjct:   142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 201

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
               P+ IQ    P ++ G+  I    +GSGKTL + LPVI    ++E + L  S    P  
Sbjct:   202 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260

Query:   349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
             +I+ P+ ELA Q   +L   CR L +   P  R  +  GG   K Q+E ++ GV +++AT
Sbjct:   261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             PGR M L+++ ++ L   R   LDE D +  D  FE  ++++ S      Q L  +AT+P
Sbjct:   321 PGRLMDLLQKKMVSLDICRYLALDEADRMI-DMGFEGDIRTIFSYFKGQRQTLLFSATMP 379

Query:   464 VEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
              +I N  K   V P   V +  G  R      + +      QE +   E A   K   LL
Sbjct:   380 KKIQNFAKSALVKP---VTINVG--RAGAASLDVI------QEVEYVKEEA---KMVYLL 425

Query:   522 QLIEKSPVSKTIVFCNKKS 540
             + ++K+P    ++F  KK+
Sbjct:   426 ECLQKTP-PPVLIFAEKKA 443


>UNIPROTKB|Q9UJV9 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
            "cellular response to interferon-beta" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0051607 "defense response to virus"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0007275 "multicellular organismal development"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
            GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
            EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
            EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
            UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
            SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
            PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
            PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
            KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
            HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
            PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
            OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
            EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
            ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
            Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
        Length = 622

 Score = 267 (99.0 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 93/319 (29%), Positives = 152/319 (47%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
             I   W     + ++  E  +  ++++    +GD      KSFKE+     ++  LK++  
Sbjct:   142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 201

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
               P+ IQ    P ++ G+  I    +GSGKTL + LPVI    ++E + L  S    P  
Sbjct:   202 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260

Query:   349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
             +I+ P+ ELA Q   +L   CR L +   P  R  +  GG   K Q+E ++ GV +++AT
Sbjct:   261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             PGR M L+++ ++ L   R   LDE D +  D  FE  ++++ S      Q L  +AT+P
Sbjct:   321 PGRLMDLLQKKMVSLDICRYLALDEADRMI-DMGFEGDIRTIFSYFKGQRQTLLFSATMP 379

Query:   464 VEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
              +I N  K   V P   V +  G  R      + +      QE +   E A   K   LL
Sbjct:   380 KKIQNFAKSALVKP---VTINVG--RAGAASLDVI------QEVEYVKEEA---KMVYLL 425

Query:   522 QLIEKSPVSKTIVFCNKKS 540
             + ++K+P    ++F  KK+
Sbjct:   426 ECLQKTP-PPVLIFAEKKA 443


>UNIPROTKB|F1SQ03 [details] [associations]
            symbol:LOC100524536 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
            ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
            GeneID:100524536 Uniprot:F1SQ03
        Length = 630

 Score = 268 (99.4 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
 Identities = 79/262 (30%), Positives = 134/262 (51%)

Query:   279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
             +++S+K+  F +P+ IQ+ A+P V++G   I   Q+G+GKTL+YL+P    L     Q +
Sbjct:   235 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNS---QPV 291

Query:   339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
             S+     P +++L PT ELA QV + C   S  G+  +S+ + GG  +K Q++++ +GVD
Sbjct:   292 SRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGL--KSVCIYGGGNRKGQIQDIMKGVD 349

Query:   399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
             ++IATPGR   L     + L ++   +LDE D +  D  FE  +  ++       Q +  
Sbjct:   350 IIIATPGRLNDLQMNNFVNLRSITYLVLDEADKML-DLGFEHQIMKILLDVRPDRQTIMT 408

Query:   459 TATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKS 518
             +AT P  I  +L   +    +++  G       L+   VD         T E     K+S
Sbjct:   409 SATWPDTI-RQLAHSYLKEPMLVYVGT------LDLVAVDTVKQNIIITTEE----EKRS 457

Query:   519 ALLQLIEK-SPVSKTIVFCNKK 539
                + ++  SP  K IVF ++K
Sbjct:   458 LFQEFLQSLSPKDKVIVFVSRK 479

 Score = 42 (19.8 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query:   220 RSNKHEKSGTKIDRGWRSGGS 240
             R+++H + G    RGW S  S
Sbjct:    18 RASQHGRDGRGRGRGWSSTSS 38


>UNIPROTKB|J3KNN5 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
            Ensembl:ENST00000330503 Uniprot:J3KNN5
        Length = 640

 Score = 267 (99.0 bits), Expect = 4.8e-20, P = 4.8e-20
 Identities = 93/319 (29%), Positives = 152/319 (47%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
             I   W     + ++  E  +  ++++    +GD      KSFKE+     ++  LK++  
Sbjct:   160 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 219

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
               P+ IQ    P ++ G+  I    +GSGKTL + LPVI    ++E + L  S    P  
Sbjct:   220 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 278

Query:   349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
             +I+ P+ ELA Q   +L   CR L +   P  R  +  GG   K Q+E ++ GV +++AT
Sbjct:   279 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 338

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             PGR M L+++ ++ L   R   LDE D +  D  FE  ++++ S      Q L  +AT+P
Sbjct:   339 PGRLMDLLQKKMVSLDICRYLALDEADRMI-DMGFEGDIRTIFSYFKGQRQTLLFSATMP 397

Query:   464 VEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
              +I N  K   V P   V +  G  R      + +      QE +   E A   K   LL
Sbjct:   398 KKIQNFAKSALVKP---VTINVG--RAGAASLDVI------QEVEYVKEEA---KMVYLL 443

Query:   522 QLIEKSPVSKTIVFCNKKS 540
             + ++K+P    ++F  KK+
Sbjct:   444 ECLQKTP-PPVLIFAEKKA 461


>UNIPROTKB|J9NZF6 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
            Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
        Length = 649

 Score = 267 (99.0 bits), Expect = 4.9e-20, P = 4.9e-20
 Identities = 93/319 (29%), Positives = 152/319 (47%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
             I   W     + ++  E  +  ++++    +GD      KSFKE+     ++  LK++  
Sbjct:   169 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 228

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
               P+ IQ    P ++ G+  I    +GSGKTL + LPVI    ++E + L  S    P  
Sbjct:   229 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 287

Query:   349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
             +I+ P+ ELA Q   +L   CR L +   P  R  +  GG   K Q+E ++ GV +++AT
Sbjct:   288 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 347

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             PGR M L+++ ++ L   R   LDE D +  D  FE  ++++ S      Q L  +AT+P
Sbjct:   348 PGRLMDLLQKKMVSLDICRYLALDEADRMI-DMGFEGDIRTIFSYFKGQRQTLLFSATMP 406

Query:   464 VEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
              +I N  K   V P   V +  G  R      + +      QE +   E A   K   LL
Sbjct:   407 KKIQNFAKSALVKP---VTINVG--RAGAASLDVI------QEVEYVKEEA---KMVYLL 452

Query:   522 QLIEKSPVSKTIVFCNKKS 540
             + ++K+P    ++F  KK+
Sbjct:   453 ECLQKTP-PPVLIFAEKKA 470


>DICTYBASE|DDB_G0282741 [details] [associations]
            symbol:ddx18 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
            GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
            RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
            EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
            KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
        Length = 602

 Score = 266 (98.7 bits), Expect = 5.3e-20, P = 5.3e-20
 Identities = 77/240 (32%), Positives = 131/240 (54%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F  L   +   +S++   F + + IQA +  P++EGK  + A ++GSGKTLA+L+P I+ 
Sbjct:   121 FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV 180

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L +       K  +G+  V+I++PT ELA Q+    R L K       +V+ GG  +K +
Sbjct:   181 LVKSNF----KPRNGTG-VIIISPTRELALQIYGVARELMKYHTQTHGIVI-GGASKKPE 234

Query:   390 LENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              E L++GV++L+ATPGR +  ++  +G +   NL+C I+DE D +  +  FE  +  +I 
Sbjct:   235 EERLEKGVNLLVATPGRLLDHLQNTKGFITK-NLKCLIIDEADRIL-EVGFEEEMHQIIK 292

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEV-FPDCKVVMGPGMHR-ISP--GLEEFLVDCSGDQ 503
               P T Q +  +AT   ++ + + +V   +  V +G    R IS   GLE+  V C  ++
Sbjct:   293 KVPKTRQTMLFSATQTRKV-DDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSER 351


>UNIPROTKB|E2RPT4 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
            EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
        Length = 687

 Score = 267 (99.0 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 91/345 (26%), Positives = 167/345 (48%)

Query:   208 ESIDKNISDYNSRSNKHEK---SGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDF 264
             E  +  +SD  S+S+K  +   S   ID   +    + +L          + + +   + 
Sbjct:    77 EGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDNKLEETLTREQ 136

Query:   265 FSRKSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
                 +F     S+  I+ LK +  ++L P  IQ   F PV EGK  I   ++G+GKT ++
Sbjct:   137 -KEGAFSNFPISEETIKLLKGRGVSYLFP--IQVKTFGPVYEGKDLIAQARTGTGKTFSF 193

Query:   323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
              +P+I+RL++ + + + KS S  P+V++LAPT ELA+QV  + + +++           G
Sbjct:   194 AIPLIERLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYG 247

Query:   383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDF 438
             G   ++Q+ +++ G+D+L+ TPGR    ++ G L L  LR  +LDEVD +    F ++  
Sbjct:   248 GTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVE 307

Query:   439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEE 494
             ++  +S  + S    Q L  +AT P  +Y K+ + +   +     ++G    + +  +E 
Sbjct:   308 DIIHESYKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEH 366

Query:   495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               + C   Q     P  A +     +LQ+   S   + I+FC  K
Sbjct:   367 LAIQCHWSQR----P--AVIGD---VLQVYSGSE-GRAIIFCETK 401


>UNIPROTKB|F1NQ09 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
            IPI:IPI00819782 ProteinModelPortal:F1NQ09
            Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
        Length = 451

 Score = 262 (97.3 bits), Expect = 5.8e-20, P = 5.8e-20
 Identities = 62/185 (33%), Positives = 104/185 (56%)

Query:   279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
             ++ ++++  F +P+ IQ+ A+P +++G   I   Q+G+GKTLAYL+P    L     Q +
Sbjct:    64 IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLAS---QPI 120

Query:   339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
              K   G P +++LAPT ELA QV + C   +  G  F+S+ + GG  +K Q+  + +GVD
Sbjct:   121 PKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG--FKSICIYGGGDRKAQINVVTKGVD 178

Query:   399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
             ++IATPGR   L     + L ++   +LDE D +  D  FE  +  ++       Q + +
Sbjct:   179 IVIATPGRLNDLQMNNFINLKSITYLVLDEADRML-DMGFEPQIMKILIDVRPDRQTVMM 237

Query:   459 TATLP 463
             +AT P
Sbjct:   238 SATWP 242


>POMBASE|SPBP8B7.16c [details] [associations]
            symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
            species:4896 "Schizosaccharomyces pombe" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
            EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
            ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
            EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
            NextBio:20802492 Uniprot:P24782
        Length = 550

 Score = 267 (99.0 bits), Expect = 6.4e-20, Sum P(2) = 6.4e-20
 Identities = 63/198 (31%), Positives = 102/198 (51%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+E G  +Y+++ +K+  F  P+ IQ  A+P  + G+  +    +GSGKTL+Y LP I 
Sbjct:   123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  + L     S    P V++LAPT ELA Q+   C    K     R+  V GG  +  
Sbjct:   183 HINAQPLL----SPGDGPIVLVLAPTRELAVQIQQECTKFGKSS-RIRNTCVYGGVPRGP 237

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L  GV++ IATPGR + ++      L  +   +LDE D +  D  FE  ++ ++  
Sbjct:   238 QIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRML-DMGFEPQIRKIVDQ 296

Query:   449 SPVTAQYLFVTATLPVEI 466
                  Q +  +AT P E+
Sbjct:   297 IRPDRQTVMFSATWPKEV 314

 Score = 39 (18.8 bits), Expect = 6.4e-20, Sum P(2) = 6.4e-20
 Identities = 16/61 (26%), Positives = 20/61 (32%)

Query:   202 DNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSAD 261
             DN+       K    YNSR            RG   GG      Y      + R+ Y +D
Sbjct:     5 DNEYSGNYNGKE-DGYNSRGRYGGGYRNNYSRGGGRGGFNDGASYGYDQRGQGRNFYESD 63

Query:   262 G 262
             G
Sbjct:    64 G 64


>MGI|MGI:2182303 [details] [associations]
            symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
            OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
            UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
            PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
            Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
            UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
            CleanEx:MM_DDX50 Genevestigator:Q99MJ9
            GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
        Length = 734

 Score = 267 (99.0 bits), Expect = 6.4e-20, P = 6.4e-20
 Identities = 79/279 (28%), Positives = 140/279 (50%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F     S+  I+ LK +       IQ   F PV EGK  I   ++G+GKT ++ +P+I+
Sbjct:   135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             RL++ + + + KS S  P+V++LAPT ELA+QV  + + +++           GG   ++
Sbjct:   195 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYGGTSYQS 248

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
             Q+  ++ G+D+L+ TPGR    ++ G L L  LR  +LDEVD +    F ++  ++  +S
Sbjct:   249 QINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHES 308

Query:   445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEEFLVDCS 500
               + S    Q L  +AT P  +Y K+ + +   +     ++G    + +  +E   + C 
Sbjct:   309 YKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367

Query:   501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               Q     P  A +     +LQ+   S   + I+FC  K
Sbjct:   368 WSQR----P--AVIGD---VLQVYSGSE-GRAIIFCETK 396


>UNIPROTKB|E2QTT0 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
            Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
        Length = 738

 Score = 267 (99.0 bits), Expect = 6.5e-20, P = 6.5e-20
 Identities = 91/345 (26%), Positives = 167/345 (48%)

Query:   208 ESIDKNISDYNSRSNKHEK---SGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDF 264
             E  +  +SD  S+S+K  +   S   ID   +    + +L          + + +   + 
Sbjct:    76 EGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDNKLEETLTREQ 135

Query:   265 FSRKSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
                 +F     S+  I+ LK +  ++L P  IQ   F PV EGK  I   ++G+GKT ++
Sbjct:   136 -KEGAFSNFPISEETIKLLKGRGVSYLFP--IQVKTFGPVYEGKDLIAQARTGTGKTFSF 192

Query:   323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
              +P+I+RL++ + + + KS S  P+V++LAPT ELA+QV  + + +++           G
Sbjct:   193 AIPLIERLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYG 246

Query:   383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDF 438
             G   ++Q+ +++ G+D+L+ TPGR    ++ G L L  LR  +LDEVD +    F ++  
Sbjct:   247 GTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVE 306

Query:   439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEE 494
             ++  +S  + S    Q L  +AT P  +Y K+ + +   +     ++G    + +  +E 
Sbjct:   307 DIIHESYKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEH 365

Query:   495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               + C   Q     P  A +     +LQ+   S   + I+FC  K
Sbjct:   366 LAIQCHWSQR----P--AVIGD---VLQVYSGSE-GRAIIFCETK 400


>SGD|S000006040 [details] [associations]
            symbol:DBP1 "Putative ATP-dependent RNA helicase of the
            DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
            [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
            "translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
            "translation initiation factor activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
            SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
            STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
            KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
            NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
            Uniprot:P24784
        Length = 617

 Score = 265 (98.3 bits), Expect = 7.3e-20, P = 7.3e-20
 Identities = 79/275 (28%), Positives = 134/275 (48%)

Query:   277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ---- 332
             + ++E++K  +F +P+ +Q  + P V +G+  +   Q+GSGKT  +L P+   L +    
Sbjct:   163 ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 222

Query:   333 ---EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKT 388
                E+ Q    S  G P  ++LAPT ELA+Q+    R  + +  V  R  VV GG     
Sbjct:   223 PVPEKAQSFY-SRKGYPSALVLAPTRELATQIFEEARKFTYRSWV--RPCVVYGGAPIGN 279

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+  +  G D+L+ATPGR   L++ G + L N++  +LDE D +  D  FE  ++ ++  
Sbjct:   280 QMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRML-DMGFEPQIRHIVEE 338

Query:   449 SPVTA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
               + +    Q L  +AT PV+I + L   F D  + +  G            V  + +  
Sbjct:   339 CDMPSVENRQTLMFSATFPVDIQH-LARDFLDNYIFLSVGR-----------VGSTSENI 386

Query:   505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             + +      ++KKSALL L+       T++F   K
Sbjct:   387 TQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETK 421


>UNIPROTKB|F1NYX0 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
            EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
            ArrayExpress:F1NYX0 Uniprot:F1NYX0
        Length = 482

 Score = 262 (97.3 bits), Expect = 7.6e-20, P = 7.6e-20
 Identities = 68/205 (33%), Positives = 105/205 (51%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+ELG + +++E  ++    RP+ +QA   PP+++G+ C+   ++GSGKT A++LPV+Q
Sbjct:     6 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 65

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              L  E+  G+          ++L PT ELA Q+    R L K  +  +  VV GG     
Sbjct:    66 VL-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCVVVGGLDMVA 115

Query:   389 QLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSL 445
             Q   L     V+IATPGR    L       L  L+  +LDE D L      DF   L+ +
Sbjct:   116 QALELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVI 175

Query:   446 ISSSPVTAQYLFVTATLPVEIYNKL 470
             + + P   Q L  +ATL  +  N+L
Sbjct:   176 LEAVPARRQTLLFSATL-TDTLNEL 199


>TAIR|locus:2041549 [details] [associations]
            symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
            EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
            UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
            PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
            KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
            OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
            GermOnline:AT2G42520 Uniprot:Q84W89
        Length = 633

 Score = 259 (96.2 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
 Identities = 65/204 (31%), Positives = 111/204 (54%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E+   + +  +++R  +++P+ +Q  A P ++EG+  +   Q+GSGKT A+  P+I 
Sbjct:   160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219

Query:   329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
              + +++ +Q    S +  P  VIL+PT ELASQ+    +  S + GV  + +V  GG   
Sbjct:   220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV--KVVVAYGGTPI 277

Query:   387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
               QL  L+ GVD+L+ATPGR   L++   + +  +R   LDE D +  D  FE  ++ ++
Sbjct:   278 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRML-DMGFEPQIRKIV 336

Query:   447 SSSPV----TAQYLFVTATLPVEI 466
                 +      Q L  +AT P EI
Sbjct:   337 EQMDMPPRGVRQTLLFSATFPREI 360

 Score = 50 (22.7 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query:   117 SSNWNKDPSQPTTSAPVLRN 136
             SSN N  PS+P    P LRN
Sbjct:    18 SSNQNSHPSRPAYVPPHLRN 37


>DICTYBASE|DDB_G0283661 [details] [associations]
            symbol:ddx3 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
            EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
            GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
            SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
            KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
        Length = 712

 Score = 266 (98.7 bits), Expect = 7.8e-20, P = 7.8e-20
 Identities = 65/210 (30%), Positives = 107/210 (50%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF ++   D ++ ++K   + +P+ +Q  A P +++ +  +   Q+GSGKT A+L P+I 
Sbjct:   248 SFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIIS 307

Query:   329 RLRQE---ELQGLSKS---TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
              +  +   E     K     +  PR ++LAPT ELA Q+       S  G P  S+V+ G
Sbjct:   308 GILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSY-GSPVSSVVIYG 366

Query:   383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
             G     Q+  L  G D+L+AT GR + L+  G + L  ++  +LDE D +  D  FE  +
Sbjct:   367 GAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRML-DMGFEPQI 425

Query:   443 QSLISSSPVTA----QYLFVTATLPVEIYN 468
             + +IS   +      Q L  +AT P +I N
Sbjct:   426 RQIISEFDMPGCRDRQTLMFSATFPKQIQN 455


>FB|FBgn0003261 [details] [associations]
            symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
            evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
            chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
            GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
            GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
            EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
            RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
            RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
            RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
            ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
            MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
            EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
            CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
            OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
            Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
        Length = 719

 Score = 266 (98.7 bits), Expect = 7.9e-20, P = 7.9e-20
 Identities = 66/207 (31%), Positives = 106/207 (51%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             + F E+   DY+++ ++RQ +  P+ IQA  +P  + G + +   ++GSGKTL Y+LP I
Sbjct:   281 QDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAI 340

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               +  +  Q L +     P  ++LAPT ELA Q+              R+  V GG  + 
Sbjct:   341 VHINNQ--QPLQRGDG--PIALVLAPTRELAQQIQQVATEFGSSSY-VRNTCVFGGAPKG 395

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q+ +LQ G +++IATPGR +  +  G   L      +LDE D +  D  FE  ++ ++S
Sbjct:   396 GQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRML-DMGFEPQIRKIVS 454

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVF 474
                   Q L  +AT P E+  +L E F
Sbjct:   455 QIRPDRQTLMWSATWPKEV-KQLAEDF 480


>UNIPROTKB|Q9BQ39 [details] [associations]
            symbol:DDX50 "ATP-dependent RNA helicase DDX50"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
            EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
            EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
            UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
            SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
            DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
            PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
            KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
            HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
            PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
            PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
            GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
            CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
        Length = 737

 Score = 266 (98.7 bits), Expect = 8.3e-20, P = 8.3e-20
 Identities = 79/279 (28%), Positives = 141/279 (50%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F     S+  I+ LK +       IQ   F PV EGK  I   ++G+GKT ++ +P+I+
Sbjct:   138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             RL++ + + + KS S  P+V++LAPT ELA+QV  + + +++           GG   ++
Sbjct:   198 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYGGTSYQS 251

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
             Q+ +++ G+D+L+ TPGR    ++ G L L  LR  +LDEVD +    F ++  ++  +S
Sbjct:   252 QINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHES 311

Query:   445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEEFLVDCS 500
               + S    Q L  +AT P  +Y K+ + +   +     ++G    + +  +E   + C 
Sbjct:   312 YKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 370

Query:   501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               Q     P  A +     +LQ+   S   + I+FC  K
Sbjct:   371 WSQR----P--AVIGD---VLQVYSGSE-GRAIIFCETK 399


>UNIPROTKB|F1NAH6 [details] [associations]
            symbol:LOC100859810 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
            [GO:0035458 "cellular response to interferon-beta" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
            to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
            EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
            Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
        Length = 607

 Score = 264 (98.0 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 86/280 (30%), Positives = 139/280 (49%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KSFKE+     ++  LK++   +P+ IQ    P ++ G+  I    +GSGKTL + LPVI
Sbjct:   177 KSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 236

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQ----VLSNCRSLSKCGVP-FRSMVVTG 382
                 ++E + L  S    P  +I+ P+ ELA Q    +   CR L +  +P  R  +  G
Sbjct:   237 MFCLEQEKR-LPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIG 295

Query:   383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
             G   K Q+E ++ GV +++ATPGR M L+++ ++ L   R   LDE D +  D  FE  +
Sbjct:   296 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMI-DMGFEGDI 354

Query:   443 QSLISSSPVTAQYLFVTATLPVEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
             +++ S      Q L  +AT+P +I N  K   V P   + +  G  R      + +    
Sbjct:   355 RTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP---ITINVG--RAGAASLDVV---- 405

Query:   501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
               QE +   E A   K   LL+ ++K+P    ++F  KK+
Sbjct:   406 --QEVEYVKEEA---KMVYLLECLQKTP-PPVLIFAEKKA 439


>UNIPROTKB|B7Z5N6 [details] [associations]
            symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
            DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
            variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
            HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
            EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
            UCSC:uc010ppl.1 Uniprot:B7Z5N6
        Length = 567

 Score = 263 (97.6 bits), Expect = 9.9e-20, P = 9.9e-20
 Identities = 86/318 (27%), Positives = 154/318 (48%)

Query:   241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
             I NLQ +  +  KQ+      G   +R    F+     + +  +LK+  +  P+ IQ   
Sbjct:   174 ILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQM 233

Query:   299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
              P  + G+  + +  +GSGKT A+LLPVI R   E         S +P  +IL PT ELA
Sbjct:   234 IPVGLLGRDILASADTGSGKTAAFLLPVIMRALFE---------SKTPSALILTPTRELA 284

Query:   359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
              Q+    + L   G+P  +++++ GG     QL  LQ+ V V+IATPGR + +IK+  ++
Sbjct:   285 IQIERQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVE 343

Query:   418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD- 476
             L  ++  ++DE D +     F+  +  ++ + P   Q + V+AT+P  I     ++  + 
Sbjct:   344 LCGVKIVVVDEADTMLK-MGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNP 402

Query:   477 CKVVMG----P--GMHRI-----SPGLEEFLVDCSGDQESDKTPETAFLNKK---SALLQ 522
              +++ G    P   + +I      P  ++ L +   D++  K P   F++ K     L +
Sbjct:   403 VRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 462

Query:   523 LIEKSPVSKTIVFCNKKS 540
              ++K    K+I   ++KS
Sbjct:   463 AVQKITGLKSISIHSEKS 480


>UNIPROTKB|F1MMK3 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
            OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
            UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
            GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
            Uniprot:F1MMK3
        Length = 737

 Score = 265 (98.3 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 79/279 (28%), Positives = 141/279 (50%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F     S+  I+ LK +       IQ   F PV EGK  I   ++G+GKT ++ +P+I+
Sbjct:   138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             RL++ + + + KS S  P+V++LAPT ELA+QV  + + +++           GG   ++
Sbjct:   198 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDVTR---KLSVACFYGGTSYQS 251

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
             Q+ +++ G+D+L+ TPGR    ++ G L L  LR  +LDEVD +    F ++  ++  +S
Sbjct:   252 QINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHES 311

Query:   445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEEFLVDCS 500
               + S    Q L  +AT P  +Y K+ + +   +     ++G    + +  +E   + C 
Sbjct:   312 YKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 370

Query:   501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               Q     P  A +     +LQ+   S   + I+FC  K
Sbjct:   371 WSQR----P--AVIGD---VLQVYSGSE-GRAIIFCETK 399


>UNIPROTKB|F1MBQ8 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
            class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
            receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
            receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0043517 "positive regulation of DNA damage response, signal
            transduction by p53 class mediator" evidence=IEA] [GO:0036002
            "pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
            of intracellular estrogen receptor signaling pathway" evidence=IEA]
            [GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0003713 "transcription coactivator activity"
            evidence=IEA] [GO:0001701 "in utero embryonic development"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
            GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
            GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
            EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
            UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
            Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
            NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
        Length = 614

 Score = 263 (97.6 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 82/272 (30%), Positives = 127/272 (46%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      +++ + RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        +     +S  + GG  +  
Sbjct:   155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQ 268

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    + +  G   +S       +VD   D E D+
Sbjct:   269 IRPDRQTLMWSATWPKEV-RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 327

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     K   L++ I     +KTIVF   K
Sbjct:   328 --------KLIRLMEEIMSEKENKTIVFVETK 351


>UNIPROTKB|J3KTA4 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003712 "transcription cofactor activity"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
            Ensembl:ENST00000578804 Uniprot:J3KTA4
        Length = 614

 Score = 263 (97.6 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 82/272 (30%), Positives = 127/272 (46%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      +++ + RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        +     +S  + GG  +  
Sbjct:   155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQ 268

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    + +  G   +S       +VD   D E D+
Sbjct:   269 IRPDRQTLMWSATWPKEV-RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 327

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     K   L++ I     +KTIVF   K
Sbjct:   328 --------KLIRLMEEIMSEKENKTIVFVETK 351


>UNIPROTKB|P17844 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0001701 "in utero embryonic development" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
            [GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
            evidence=IEA] [GO:0045069 "regulation of viral genome replication"
            evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
            [GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0043517 "positive regulation of DNA damage response, signal
            transduction by p53 class mediator" evidence=IMP] [GO:0072332
            "intrinsic apoptotic signaling pathway by p53 class mediator"
            evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
            "regulation of skeletal muscle cell differentiation" evidence=ISS]
            [GO:0045667 "regulation of osteoblast differentiation"
            evidence=ISS] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0050681
            "androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
            of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
            "positive regulation of intracellular estrogen receptor signaling
            pathway" evidence=IDA] [GO:0003713 "transcription coactivator
            activity" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
            "pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
            GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
            GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
            GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
            GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
            EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
            RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
            PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
            IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
            DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
            PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
            Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
            CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
            HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
            InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
            EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
            ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
            Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
        Length = 614

 Score = 263 (97.6 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 82/272 (30%), Positives = 127/272 (46%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      +++ + RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        +     +S  + GG  +  
Sbjct:   155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQ 268

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    + +  G   +S       +VD   D E D+
Sbjct:   269 IRPDRQTLMWSATWPKEV-RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 327

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     K   L++ I     +KTIVF   K
Sbjct:   328 --------KLIRLMEEIMSEKENKTIVFVETK 351


>UNIPROTKB|Q4R6M5 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
            HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
            Uniprot:Q4R6M5
        Length = 614

 Score = 263 (97.6 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 82/272 (30%), Positives = 127/272 (46%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      +++ + RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        +     +S  + GG  +  
Sbjct:   155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQ 268

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    + +  G   +S       +VD   D E D+
Sbjct:   269 IRPDRQTLMWSATWPKEV-RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 327

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     K   L++ I     +KTIVF   K
Sbjct:   328 --------KLIRLMEEIMSEKENKTIVFVETK 351


>UNIPROTKB|Q5R4I9 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
            GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
            RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
            PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
            Uniprot:Q5R4I9
        Length = 614

 Score = 263 (97.6 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 82/272 (30%), Positives = 127/272 (46%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      +++ + RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        +     +S  + GG  +  
Sbjct:   155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQ 268

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    + +  G   +S       +VD   D E D+
Sbjct:   269 IRPDRQTLMWSATWPKEV-RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 327

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     K   L++ I     +KTIVF   K
Sbjct:   328 --------KLIRLMEEIMSEKENKTIVFVETK 351


>MGI|MGI:105037 [details] [associations]
            symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
            species:10090 "Mus musculus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0001701 "in utero embryonic development"
            evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003712 "transcription cofactor activity" evidence=IDA]
            [GO:0003713 "transcription coactivator activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
            "nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
            receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0033148 "positive regulation of
            intracellular estrogen receptor signaling pathway" evidence=ISO]
            [GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
            replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=IMP] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
            evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
            [GO:0060765 "regulation of androgen receptor signaling pathway"
            evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
            p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
            skeletal muscle cell differentiation" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
            GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
            GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
            GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
            EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
            ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
            UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
            DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
            PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
            Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
        Length = 614

 Score = 263 (97.6 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 82/272 (30%), Positives = 127/272 (46%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      +++ + RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        +     +S  + GG  +  
Sbjct:   155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQ 268

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    + +  G   +S       +VD   D E D+
Sbjct:   269 IRPDRQTLMWSATWPKEV-RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 327

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     K   L++ I     +KTIVF   K
Sbjct:   328 --------KLIRLMEEIMSEKENKTIVFVETK 351


>RGD|619906 [details] [associations]
            symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
            "Rattus norvegicus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
            development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
            activity" evidence=ISO] [GO:0003713 "transcription coactivator
            activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
            evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
            rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
            evidence=IDA] [GO:0030331 "estrogen receptor binding"
            evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISO] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
            "pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
            replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
            evidence=IDA] [GO:0050681 "androgen receptor binding"
            evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
            signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
            signaling pathway by p53 class mediator" evidence=IEA;ISO]
            [GO:2001014 "regulation of skeletal muscle cell differentiation"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
            GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
            GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
            EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
            GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
            EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
            UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
            Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
            UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
            Genevestigator:Q6AYI1 Uniprot:Q6AYI1
        Length = 615

 Score = 263 (97.6 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 82/272 (30%), Positives = 127/272 (46%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      +++ + RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        +     +S  + GG  +  
Sbjct:   155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   210 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQ 268

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    + +  G   +S       +VD   D E D+
Sbjct:   269 IRPDRQTLMWSATWPKEV-RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 327

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     K   L++ I     +KTIVF   K
Sbjct:   328 --------KLIRLMEEIMSEKENKTIVFVETK 351


>UNIPROTKB|Q5T1V6 [details] [associations]
            symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
            IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
            UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
            SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
            PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
            Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
            CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
            neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
            EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
            ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
            Genevestigator:Q5T1V6 Uniprot:Q5T1V6
        Length = 619

 Score = 263 (97.6 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 86/318 (27%), Positives = 154/318 (48%)

Query:   241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
             I NLQ +  +  KQ+      G   +R    F+     + +  +LK+  +  P+ IQ   
Sbjct:   174 ILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQM 233

Query:   299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
              P  + G+  + +  +GSGKT A+LLPVI R   E         S +P  +IL PT ELA
Sbjct:   234 IPVGLLGRDILASADTGSGKTAAFLLPVIMRALFE---------SKTPSALILTPTRELA 284

Query:   359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
              Q+    + L   G+P  +++++ GG     QL  LQ+ V V+IATPGR + +IK+  ++
Sbjct:   285 IQIERQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVE 343

Query:   418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD- 476
             L  ++  ++DE D +     F+  +  ++ + P   Q + V+AT+P  I     ++  + 
Sbjct:   344 LCGVKIVVVDEADTMLK-MGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNP 402

Query:   477 CKVVMG----P--GMHRI-----SPGLEEFLVDCSGDQESDKTPETAFLNKK---SALLQ 522
              +++ G    P   + +I      P  ++ L +   D++  K P   F++ K     L +
Sbjct:   403 VRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 462

Query:   523 LIEKSPVSKTIVFCNKKS 540
              ++K    K+I   ++KS
Sbjct:   463 AVQKITGLKSISIHSEKS 480


>TIGR_CMR|VC_2564 [details] [associations]
            symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
            DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
            Uniprot:Q9KP15
        Length = 460

 Score = 259 (96.2 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 72/271 (26%), Positives = 129/271 (47%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF  L     ++ +L+   F   + IQA + P +++G+  I   ++GSGKT A+ L V+ 
Sbjct:     5 SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              L  +  +          + ++L PT ELA QV ++ R+L +     + + + GG     
Sbjct:    65 NLNVKRFR---------VQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGP 115

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ G  +L+ TPGR +  + +  + L  L   +LDE D +  +  F+ AL+++I++
Sbjct:   116 QIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRML-EMGFQEALEAIIAA 174

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
             +P   Q L  +AT P  I      V  +  ++     H  S  + ++     G    D+ 
Sbjct:   175 APAERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEA 233

Query:   509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
              ET  L+ +          P S ++VFCN K
Sbjct:   234 LETLLLHHQ----------PTS-SVVFCNTK 253


>UNIPROTKB|E1BSC0 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
            IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
        Length = 1031

 Score = 255 (94.8 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 60/199 (30%), Positives = 108/199 (54%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K++ + G S  ++ +LK+  + +P+ IQ+ A P ++ G+  I   ++GSGKT+A+LLP+ 
Sbjct:   371 KTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMF 430

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + +  +  + L +     P  VI+ PT ELA Q+   C+  SK  +  R + V GG    
Sbjct:   431 RHIMDQ--RALEEGEG--PIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 485

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     +LDE D +F D  FE  +  
Sbjct:   486 EQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMF-DMGFEPQVMR 544

Query:   445 LISSSPVTAQYLFVTATLP 463
             ++ +     Q +  +AT P
Sbjct:   545 IVDNVRPDRQTVMFSATFP 563

 Score = 59 (25.8 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 25/114 (21%), Positives = 51/114 (44%)

Query:   150 SFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAES 209
             S SR + +R ++    ++   +KT N  + + R      S E  +E  +   + D  A++
Sbjct:    93 SRSRSRGRRSRSPSPSKN---RKTENRSRSKERTEGVEVSKEKKKEKDDKEEEKDKDAKN 149

Query:   210 IDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGD 263
              D+N  +   R  K      + ++  ++  +I  L+ E  +  KQ  K+S + D
Sbjct:   150 FDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEM-KQGKKWSLEDD 202


>UNIPROTKB|I3LHW0 [details] [associations]
            symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
            Uniprot:I3LHW0
        Length = 621

 Score = 268 (99.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 79/262 (30%), Positives = 134/262 (51%)

Query:   279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
             +++S+K+  F +P+ IQ+ A+P V++G   I   Q+G+GKTL+YL+P    L     Q +
Sbjct:   226 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNS---QPV 282

Query:   339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
             S+     P +++L PT ELA QV + C   S  G+  +S+ + GG  +K Q++++ +GVD
Sbjct:   283 SRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGL--KSVCIYGGGNRKGQIQDIMKGVD 340

Query:   399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
             ++IATPGR   L     + L ++   +LDE D +  D  FE  +  ++       Q +  
Sbjct:   341 IIIATPGRLNDLQMNNFVNLRSITYLVLDEADKML-DLGFEHQIMKILLDVRPDRQTIMT 399

Query:   459 TATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKS 518
             +AT P  I  +L   +    +++  G       L+   VD         T E     K+S
Sbjct:   400 SATWPDTI-RQLAHSYLKEPMLVYVGT------LDLVAVDTVKQNIIITTEE----EKRS 448

Query:   519 ALLQLIEK-SPVSKTIVFCNKK 539
                + ++  SP  K IVF ++K
Sbjct:   449 LFQEFLQSLSPKDKVIVFVSRK 470

 Score = 37 (18.1 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query:   221 SNKHEKSGTKIDRGWRSGGS 240
             +++H + G    RGW S  S
Sbjct:    11 NSQHGRDGRGRGRGWSSTSS 30


>UNIPROTKB|F1PEA6 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=IEA] [GO:0003712 "transcription cofactor
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
            Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
        Length = 671

 Score = 263 (97.6 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 82/272 (30%), Positives = 127/272 (46%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      +++ + RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:   152 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 211

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        +     +S  + GG  +  
Sbjct:   212 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 266

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV++ IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   267 QIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQ 325

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    + +  G   +S       +VD   D E D+
Sbjct:   326 IRPDRQTLMWSATWPKEV-RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 384

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     K   L++ I     +KTIVF   K
Sbjct:   385 --------KLIRLMEEIMSEKENKTIVFVETK 408


>FB|FBgn0029979 [details] [associations]
            symbol:CG10777 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
            GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
            GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
            RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
            MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
            KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
            InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
            NextBio:774939 Uniprot:Q9W3M7
        Length = 945

 Score = 265 (98.3 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 68/201 (33%), Positives = 104/201 (51%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF+E     ++IE +KRQ F +P+ IQ+  +P  + G+  +   Q+GSGKTLAY+LP I 
Sbjct:   238 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297

Query:   329 RLRQEE--LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFR 385
              +  +   ++G      G P  ++LAPT ELA Q+ S  R     C    R   + GG  
Sbjct:   298 HIGNQPPIIRG-----EG-PIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSS 351

Query:   386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
             +  Q  +L  GV+V+IATPGR +  ++     L      +LDE D +  D  FE  ++ +
Sbjct:   352 KVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRML-DMGFEPQIRKI 410

Query:   446 ISSSPVTAQYLFVTATLPVEI 466
             I       Q +  +AT P E+
Sbjct:   411 IEQIRPDRQVVMWSATWPKEV 431


>POMBASE|SPBC17D1.06 [details] [associations]
            symbol:dbp3 "ATP-dependent RNA helicase Dbp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
            "ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
            GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
            PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
            STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
            GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
            Uniprot:Q10202
        Length = 578

 Score = 260 (96.6 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 101/374 (27%), Positives = 172/374 (45%)

Query:   145 KGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDND 204
             K  +   ++   + +K   D+ +++ +K   +  +  +  K  PS +  R     I   D
Sbjct:    44 KAFLLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKHKKDKPSADKDR-----ISKKD 98

Query:   205 VPAESIDKNISDYNSRSNKHEKSGTKIDRG--WRSGGSIHNLQYEPTDCPKQRHKYS-AD 261
                    K+ +   S     E+ G KI +     +  S HN + E  D   ++H  S AD
Sbjct:    99 KKKSKKGKSKTKEESIEINAEE-GAKIAQPAIGSANASNHNDE-EAYDRYIKKHNISFAD 156

Query:   262 G----DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
                  +      F EL  S  + E LK  N+  P+ IQA  +P ++ G+  +   ++GSG
Sbjct:   157 PKSSENLLPILQFDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSG 214

Query:   318 KTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
             KT+A+ +P +Q L      GLS + S  PRV++++PT ELA Q   N  SL + G   ++
Sbjct:   215 KTVAFGIPALQYLN-----GLSDNKS-VPRVLVVSPTRELAIQTYENLNSLIQ-GTNLKA 267

Query:   378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
             +VV GG   K++     +   V+I TPGR + LI +G +    +   +LDE D +  D  
Sbjct:   268 VVVYGG-APKSEQARAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRML-DTG 325

Query:   438 FEVALQSLISSSPV-----TAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPG 491
             FE  ++++IS +P      + Q +F +AT P  +         D  K+ +G      S  
Sbjct:   326 FEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQN 385

Query:   492 LEEFLVDCSGDQES 505
             + + +V+   D  S
Sbjct:   386 ITQ-IVEILDDPRS 398


>ZFIN|ZDB-GENE-021220-2 [details] [associations]
            symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
            HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
            HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
            EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
            STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
            GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
        Length = 862

 Score = 263 (97.6 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 64/194 (32%), Positives = 105/194 (54%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ +G S  + + + ++ +  P+ IQ    P +++GK  +   ++GSGKT A+L+P+ ++
Sbjct:    80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L+  + Q      +G+ R +IL PT ELA Q +   + L K     R+ ++ GG     Q
Sbjct:   140 LKAPQAQ------TGA-RALILTPTRELALQTMKFTKELGKF-TGLRTALILGGDSMDDQ 191

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                L E  D++I TPGR M +I+E  L+L ++   + DE D LF +  F   LQ +I   
Sbjct:   192 FAALHENPDIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIRRL 250

Query:   450 PVTAQYLFVTATLP 463
             P   Q L  +ATLP
Sbjct:   251 PDARQTLLFSATLP 264


>UNIPROTKB|F1NL04 [details] [associations]
            symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
            of protein localization" evidence=IEA] [GO:0033391 "chromatoid
            body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
            GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
            EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
            Ensembl:ENSGALT00000038830 Uniprot:F1NL04
        Length = 542

 Score = 259 (96.2 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 69/276 (25%), Positives = 141/276 (51%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+E   +  + +++ +  + + + +Q  + P +  G+  +   Q+GSGKT A+LLP++ 
Sbjct:   168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVD 227

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             R+ ++ +   +      P+ +I+APT EL +Q+    R     G   R +V+ GG +   
Sbjct:   228 RMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVY-GTCIRPVVIYGGTQTGH 286

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
              +  + +G ++L ATPGR + +I++G + L+ ++  +LDE D +  D  F + ++ LIS 
Sbjct:   287 SIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRML-DMGFGLDMKKLISY 345

Query:   449 SPVTA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
               + +    Q L  +AT P E+     E      + +  G    + G       CS  Q+
Sbjct:   346 PEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGN---TCGA------CSDVQQ 396

Query:   505 SD-KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             +  + P    L+K+  L+++++ +   +T+VF + K
Sbjct:   397 NILQVPR---LSKRDKLIEILQSTGGERTMVFVDTK 429


>FB|FBgn0011802 [details] [associations]
            symbol:Gem3 "Gemin3" species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0007528 "neuromuscular junction development"
            evidence=IMP] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0022618 "ribonucleoprotein complex
            assembly" evidence=IMP] [GO:0071254 "cytoplasmic U snRNP body"
            evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE014296 GO:GO:0007528 GO:GO:0006200 GO:GO:0003676
            GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0016779 HSSP:P10081 KO:K13131
            GeneTree:ENSGT00530000062880 GO:GO:0071254 GO:GO:0022618
            EMBL:AF160911 RefSeq:NP_524019.1 UniGene:Dm.921 SMR:Q9V3C4
            IntAct:Q9V3C4 MINT:MINT-750334 STRING:Q9V3C4
            EnsemblMetazoa:FBtr0076292 EnsemblMetazoa:FBtr0334100 GeneID:39195
            KEGG:dme:Dmel_CG6539 UCSC:CG6539-RA CTD:39195 FlyBase:FBgn0011802
            InParanoid:Q9V3C4 OMA:TPTKIQA OrthoDB:EOG44MW6X GenomeRNAi:39195
            NextBio:812430 Uniprot:Q9V3C4
        Length = 1028

 Score = 264 (98.0 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 73/272 (26%), Positives = 124/272 (45%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K+F+EL     ++  LKR NF+ P++IQA A P  +     I+  +SG+GKTL Y++ V+
Sbjct:    25 KTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVV 84

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             Q       Q         P  +I+ PT ELA QV      L K    F+     GG    
Sbjct:    85 QSFNPNINQ---------PHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVA 135

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
                + + E   V+I TPGR + L +  +  +  LR  +LDE D L+  +  +  +  LI 
Sbjct:   136 KDRKRMNES-RVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIE 194

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
             + P   Q +  +AT    +  +L +V     ++       +  G+ +F+ +    Q+++ 
Sbjct:   195 AMPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELP--QQNNS 252

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               E     K   L Q+  + P  + I+F + +
Sbjct:   253 VEEMRL--KLQILGQIFNQLPYEQAIIFASSQ 282


>UNIPROTKB|A7YWQ8 [details] [associations]
            symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
            OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
            EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
            RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
            GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
            Uniprot:A7YWQ8
        Length = 545

 Score = 259 (96.2 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 88/329 (26%), Positives = 150/329 (45%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ--NF 288
             + RGW+        + +     + +H+  A  +  S+ SF +LG    ++ +L+      
Sbjct:    93 VSRGWKH----RRARQDYFSIERAQHEAPALRNLSSKGSFADLGLEPRVLSALQEAAPEV 148

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
             +RP+ +Q+   PP++ G+  + A ++GSGKTL Y+LP++QRL  +    L  S   +PR 
Sbjct:   149 VRPTTVQSSTIPPLLRGRHILCAAETGSGKTLGYMLPLLQRLLGQP--SLYTSRIPAPRG 206

Query:   349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF---RQKTQLENLQEGVDVLIATPG 405
             ++L P+ ELA QV +  + L    +  R   + GG    R + QL       +VL+ATPG
Sbjct:   207 LVLVPSRELAEQVRAVAQPLGS-SLGLRVQELGGGHGMSRVRLQLSK-HPPAEVLVATPG 264

Query:   406 RFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA---LQ-SLISSSPVT--------A 453
                  +K  ++ L  L   +LDEVD L ++   E+    L+ S I+  P          A
Sbjct:   265 ALWKALKGQLISLAQLSFLVLDEVDTLLDESFLELVDYILEKSHIAEGPADLKDPFNPKA 324

Query:   454 QYLFVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET 511
             Q + V AT P  +   L +V        +    +H I P +++  +   G   ++K  E 
Sbjct:   325 QLVLVGATFPEGVGQLLSKVASLDSLTTITSSKLHCIMPHVKQTFMRLKG---AEKVTEL 381

Query:   512 AFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
               + K+               +VFCN  S
Sbjct:   382 VQILKQHDRAH--RTGSTGTVLVFCNSSS 408


>UNIPROTKB|F1N991 [details] [associations]
            symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
            meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
            [GO:0032880 "regulation of protein localization" evidence=IEA]
            [GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
            "perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
            GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
            OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
            IPI:IPI00819436 ProteinModelPortal:F1N991
            Ensembl:ENSGALT00000023724 Uniprot:F1N991
        Length = 568

 Score = 259 (96.2 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 69/276 (25%), Positives = 141/276 (51%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+E   +  + +++ +  + + + +Q  + P +  G+  +   Q+GSGKT A+LLP++ 
Sbjct:   168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVD 227

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             R+ ++ +   +      P+ +I+APT EL +Q+    R     G   R +V+ GG +   
Sbjct:   228 RMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVY-GTCIRPVVIYGGTQTGH 286

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
              +  + +G ++L ATPGR + +I++G + L+ ++  +LDE D +  D  F + ++ LIS 
Sbjct:   287 SIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRML-DMGFGLDMKKLISY 345

Query:   449 SPVTA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
               + +    Q L  +AT P E+     E      + +  G    + G       CS  Q+
Sbjct:   346 PEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGN---TCGA------CSDVQQ 396

Query:   505 SD-KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
             +  + P    L+K+  L+++++ +   +T+VF + K
Sbjct:   397 NILQVPR---LSKRDKLIEILQSTGGERTMVFVDTK 429


>UNIPROTKB|Q86TM3 [details] [associations]
            symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
            EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
            UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
            SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
            PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
            KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
            HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
            PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
            EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
            Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
            GermOnline:ENSG00000184735 Uniprot:Q86TM3
        Length = 631

 Score = 260 (96.6 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 60/202 (29%), Positives = 111/202 (54%)

Query:   279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
             +++S+ R   ++P+ IQ+ A+P +++G   I+  Q+G+GKTL+YL+P    L   + Q +
Sbjct:   233 LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHL---DSQPI 289

Query:   339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
             S+     P +++L PT ELA  V + C   S  G+  +S+ + GG  +  Q+E++ +GVD
Sbjct:   290 SREQRNGPGMLVLTPTRELALHVEAECSKYSYKGL--KSICIYGGRNRNGQIEDISKGVD 347

Query:   399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
             ++IATPGR   L     + L ++   ++DE D +  D +FE  ++ ++       Q +  
Sbjct:   348 IIIATPGRLNDLQMNNSVNLRSITYLVIDEADKML-DMEFEPQIRKILLDVRPDRQTVMT 406

Query:   459 TATLPVEIYNKLVEVFPDCKVV 480
             +AT P  +    +    D  +V
Sbjct:   407 SATWPDTVRQLALSYLKDPMIV 428


>UNIPROTKB|F1S0I6 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
            EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
            Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
        Length = 650

 Score = 260 (96.6 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 79/268 (29%), Positives = 139/268 (51%)

Query:   275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-VIQRLRQE 333
             C   ++ ++K+  F +P+ IQ+ A+P +++G   I   Q+G+GKTL+YL+P  I    Q 
Sbjct:   248 CYPEVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQP 307

Query:   334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL 393
              +  L ++ +G P +++L PT ELA QV + C   S  G+  +S+ V GG  +  Q+++L
Sbjct:   308 VVFSLQRARNG-PGMLVLTPTRELALQVEAECSKYSYKGL--KSVCVYGGGDRDGQIKDL 364

Query:   394 QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA 453
              +GVD++IATPGR   L     + L ++   +LDE D +  D  FE  +  ++       
Sbjct:   365 LKGVDIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKML-DMGFEPQIMKILLDIRPDR 423

Query:   454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAF 513
             Q +  +AT P  +  +L + +     +  P +  +  G  + +   +  Q    T E   
Sbjct:   424 QTVMTSATWPYAV-RRLAQSY-----LKEPMI--VYVGTLDLVAVSTVKQNIIVTTED-- 473

Query:   514 LNKKSALLQLIEK-SPVSKTIVFCNKKS 540
               K+S +   IE  SP  K I+F ++K+
Sbjct:   474 -EKRSHIQTFIESMSPKDKVIIFVSRKA 500


>DICTYBASE|DDB_G0274325 [details] [associations]
            symbol:ddx52 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
            GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
            EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
            ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
            KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
        Length = 668

 Score = 260 (96.6 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 82/286 (28%), Positives = 138/286 (48%)

Query:   202 DNDVPAESIDKNISDYNSRSNKHEKSG--TKIDRGWRSGGSIHNLQYEPTDCPKQRHKYS 259
             +N+   +S D + S  N   NK++K    T+ D+  R   +  N      D        +
Sbjct:   136 ENENSDDSDDSDDSGKNKNKNKNKKVSKETQEDKHKREIATFRNKHRIKVDGTDIPDPMT 195

Query:   260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
                   +R  FK      Y++ ++    +  PS IQ    P +++ +  +    +GSGKT
Sbjct:   196 EFSQLENR--FK---VRKYLLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKT 250

Query:   320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
              ++ +P++Q L + + +G         R VI+APT ELA Q+  N R LSK G PFR  V
Sbjct:   251 ASFSIPILQALYEPKKEGF--------RSVIIAPTRELAQQIYRNFRLLSK-GKPFRICV 301

Query:   380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
             ++     ++  ENL +  D+LI TP R ++LIKE +L L  +   + DE D LF D++F+
Sbjct:   302 LSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENLLSLNKVEYLVFDEADKLF-DKNFQ 360

Query:   440 VALQSLISS--SPVTAQYLF-VTATLPVEIYNKLVEVFPDCKVVMG 482
               +  ++++  +P     LF  T    VE     +   P  K+++G
Sbjct:   361 EQVDIVVTACQNPKLKICLFSATMNQQVEELGHSIMKNP-IKIIIG 405


>UNIPROTKB|Q8TDD1 [details] [associations]
            symbol:DDX54 "ATP-dependent RNA helicase DDX54"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=IDA] [GO:0005102
            "receptor binding" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
            "RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
            evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
            [GO:0030520 "intracellular estrogen receptor signaling pathway"
            evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
            EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
            IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
            RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
            SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
            DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
            DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
            GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
            CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
            MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
            HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
            NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
            Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
        Length = 881

 Score = 262 (97.3 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 64/194 (32%), Positives = 106/194 (54%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ +G S  + + + ++ +  P+ IQ    P +++GK  +   ++GSGKT  +LLP+ +R
Sbjct:    98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L+    Q      +G+ R +IL+PT ELA Q L   + L K     ++ ++ GG R + Q
Sbjct:   158 LKTHSAQ------TGA-RALILSPTRELALQTLKFTKELGKF-TGLKTALILGGDRMEDQ 209

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                L E  D++IATPGR + +  E  L+L ++   + DE D LF +  F   LQ +I+  
Sbjct:   210 FAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIARL 268

Query:   450 PVTAQYLFVTATLP 463
             P   Q +  +ATLP
Sbjct:   269 PGGHQTVLFSATLP 282


>MGI|MGI:1920895 [details] [associations]
            symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
            GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
            GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
            OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
            EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
            UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
            STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
            Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
            UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
            Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
            GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
        Length = 1032

 Score = 263 (97.6 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 62/199 (31%), Positives = 105/199 (52%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KS+ + G S  ++ SLK+  + +P+ IQ  A P ++ G+  I   ++GSGKT+A+LLP+ 
Sbjct:   372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + +  +     S      P  VI+ PT ELA Q+   C+  SK  +  R + V GG    
Sbjct:   432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     +LDE D +F D  FE  +  
Sbjct:   487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMF-DMGFEPQVMR 545

Query:   445 LISSSPVTAQYLFVTATLP 463
             ++ +     Q +  +AT P
Sbjct:   546 IVDNVRPDRQTVMFSATFP 564


>RGD|708480 [details] [associations]
            symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
            HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
            EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
            RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
            STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
            Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
            UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
            ArrayExpress:Q62780 Genevestigator:Q62780
            GermOnline:ENSRNOG00000021637 Uniprot:Q62780
        Length = 1032

 Score = 263 (97.6 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 62/199 (31%), Positives = 105/199 (52%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KS+ + G S  ++ SLK+  + +P+ IQ  A P ++ G+  I   ++GSGKT+A+LLP+ 
Sbjct:   372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + +  +     S      P  VI+ PT ELA Q+   C+  SK  +  R + V GG    
Sbjct:   432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     +LDE D +F D  FE  +  
Sbjct:   487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMF-DMGFEPQVMR 545

Query:   445 LISSSPVTAQYLFVTATLP 463
             ++ +     Q +  +AT P
Sbjct:   546 IVDNVRPDRQTVMFSATFP 564


>UNIPROTKB|Q62780 [details] [associations]
            symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
            species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
            GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
            OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
            PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
            ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
            PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
            KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
            ArrayExpress:Q62780 Genevestigator:Q62780
            GermOnline:ENSRNOG00000021637 Uniprot:Q62780
        Length = 1032

 Score = 263 (97.6 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 62/199 (31%), Positives = 105/199 (52%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KS+ + G S  ++ SLK+  + +P+ IQ  A P ++ G+  I   ++GSGKT+A+LLP+ 
Sbjct:   372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + +  +     S      P  VI+ PT ELA Q+   C+  SK  +  R + V GG    
Sbjct:   432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     +LDE D +F D  FE  +  
Sbjct:   487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMF-DMGFEPQVMR 545

Query:   445 LISSSPVTAQYLFVTATLP 463
             ++ +     Q +  +AT P
Sbjct:   546 IVDNVRPDRQTVMFSATFP 564


>ASPGD|ASPL0000054300 [details] [associations]
            symbol:AN0583 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
            STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
            KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
            OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
        Length = 936

 Score = 270 (100.1 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 73/236 (30%), Positives = 123/236 (52%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ +G +  +++++ R+ F  P+ IQ    P ++E +  +   ++GSGKT A+++P+I++
Sbjct:    93 FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L+       S ST    R +IL+P+ ELA Q L   + L K G   +S+++ GG   + Q
Sbjct:   153 LK-------SHSTKFGARGLILSPSRELALQTLKVVKELGK-GTDLKSVLLVGGDSLEEQ 204

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                +    D++IATPGRF+ L  E  L L +++  + DE D LF +  F   L  ++   
Sbjct:   205 FGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLF-EMGFAAQLTEILHGL 263

Query:   450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE-FLVDCSGDQE 504
             P T Q L  +ATLP  +         D  +V      +ISP L+  F    S ++E
Sbjct:   264 PSTRQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKE 319

 Score = 38 (18.4 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query:   500 SGDQESDKTPETAFLN 515
             + + +SD TP T F N
Sbjct:   709 NSNSKSDSTPTTLFQN 724


>ASPGD|ASPL0000000390 [details] [associations]
            symbol:AN6374 species:162425 "Emericella nidulans"
            [GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IEA] [GO:0033680 "ATP-dependent DNA/RNA
            helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
            RefSeq:XP_663978.1 ProteinModelPortal:Q5AZA6 STRING:Q5AZA6
            EnsemblFungi:CADANIAT00006610 GeneID:2871271 KEGG:ani:AN6374.2
            HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ Uniprot:Q5AZA6
        Length = 610

 Score = 259 (96.2 bits), Expect = 3.3e-19, P = 3.3e-19
 Identities = 69/240 (28%), Positives = 126/240 (52%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             + F+ L     + ++L ++ F +P+ +QA A P  +EGK  +   ++GSGKT AY+LP++
Sbjct:    28 EDFETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPIL 87

Query:   328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFR 385
             Q + Q++ +    K+T+G    +IL PT ELA QV     + +  CG   RS+ +T    
Sbjct:    88 QTILQKKAIDPSMKATTG----LILVPTRELAEQVQKVITTFAAFCGKDVRSVNLTQKVS 143

Query:   386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
                Q   L +  D++++TP R +  +    L L NL   ++DE D++ +   +E  + +L
Sbjct:   144 DAVQKAMLADYPDIVVSTPARVIANLGTSALSLENLTHLVIDEADLVLS-YGYEDDINAL 202

Query:   446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG-PGMHRISPGLEEFLVDCSGDQE 504
               + P   Q   ++ATL  E+ + L  +F    V++          G+ +F+V C+ D++
Sbjct:   203 SKAIPRGVQTFLMSATLTAEV-DTLKGLFCRSPVILKLEDKDDHGAGVSQFVVKCAEDEK 261


>CGD|CAL0003464 [details] [associations]
            symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
            EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
            RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
            KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
        Length = 908

 Score = 262 (97.3 bits), Expect = 3.3e-19, P = 3.3e-19
 Identities = 61/195 (31%), Positives = 104/195 (53%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF   G + +++ ++ ++ + +P+ IQ    P ++EG+  +   ++GSGKT A++LP+I+
Sbjct:   100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIE 159

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             RL+  +         G  R VIL+P+ ELA Q     +  S  G   +S+V+ GG   + 
Sbjct:   160 RLKSRQ--------PGGVRAVILSPSRELALQTYKQVKEFSH-GTNLQSIVLIGGDSLEE 210

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
                 +    D+++ TPGRF+ L  E    L+ ++  + DE D LF +  F   L  L++S
Sbjct:   211 DFSKMMTKPDIIVCTPGRFLHLKVEMQYDLMTVQYIVFDEADRLF-EMGFAEQLNELLAS 269

Query:   449 SPVTAQYLFVTATLP 463
              P   Q L  +ATLP
Sbjct:   270 LPSNRQSLLFSATLP 284


>TAIR|locus:2081061 [details] [associations]
            symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
            "vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
            evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
            PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
            SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
            UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
            PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
            KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
            HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
            ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
            Uniprot:Q9SQV1
        Length = 1088

 Score = 263 (97.6 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 78/294 (26%), Positives = 141/294 (47%)

Query:   248 PTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG 305
             P +  +++H+ +  G+       +F+  G    ++  L    F  P+ IQA  +P  ++ 
Sbjct:   413 PVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQS 472

Query:   306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365
             +  +   ++GSGKTL YL+P    LR       + S +G P V+ILAPT ELA+Q+    
Sbjct:   473 RDIVAIAKTGSGKTLGYLIPAFILLRHCR----NDSRNG-PTVLILAPTRELATQIQDEA 527

Query:   366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425
                 +         + GG  +  QL+ L+ G D+++ATPGR   +++  ++    +   +
Sbjct:   528 LRFGRSS-RISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLV 586

Query:   426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM 485
             LDE D +  D  FE  ++ +++  P   Q L  TAT P E+  K+     D  +++ P  
Sbjct:   587 LDEADRML-DMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV-RKIAS---D--LLVNPVQ 639

Query:   486 HRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               I   ++E   + +  Q  +  P+     +   +L+  E+   SK I+FC+ K
Sbjct:   640 VNIGR-VDELAANKAITQYVEVVPQMEKERRLEQILRSQERG--SKVIIFCSTK 690


>FB|FBgn0037549 [details] [associations]
            symbol:CG7878 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
            GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
            UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
            GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
            FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
            GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
        Length = 703

 Score = 260 (96.6 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 73/263 (27%), Positives = 131/263 (49%)

Query:   279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
             M+E + +  F +PS IQ+ A+P +++G   I   Q+G+GKTLA+LLP    +   E Q  
Sbjct:   294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLP---GMIHTEYQST 350

Query:   339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
              + T G   V++LAPT ELA Q+    +  S  G+  +++ V GG  +  Q+ +L+ G +
Sbjct:   351 PRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGM--KAVCVYGGGNRNMQISDLERGAE 408

Query:   399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
             ++I TPGR   LI   ++ +  +   +LDE D +  D  FE  ++ ++       Q +  
Sbjct:   409 IIICTPGRLNDLIMANVIDVSTITYLVLDEADRML-DMGFEPQIRKVMLDIRPDRQTIMT 467

Query:   459 TATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNK 516
             +AT P  +  +L + +     +V +G      +  +++ +     D +   T  T+F+  
Sbjct:   468 SATWPPGV-RRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTI-TSFVKN 525

Query:   517 KSALLQLIEKSPVSKTIVFCNKK 539
              S+           K I+FC +K
Sbjct:   526 MSS---------TDKIIIFCGRK 539


>TAIR|locus:2084178 [details] [associations]
            symbol:DRH1 "DEAD box RNA helicase 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
            PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
            SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
            EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
            EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
            PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
            RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
            ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
            PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
            EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
            KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
            OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
            Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
        Length = 619

 Score = 258 (95.9 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 75/291 (25%), Positives = 136/291 (46%)

Query:   254 QRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             +RH+ +  G        SF+  G    ++  +    F  P+ IQA ++P  ++G+  +  
Sbjct:   142 RRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAI 201

Query:   312 DQSGSGKTLAYLLPV---IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368
              ++GSGKTL YL+P    +QR+R +   G        P +++L+PT ELA+Q+       
Sbjct:   202 AKTGSGKTLGYLIPGFLHLQRIRNDSRMG--------PTILVLSPTRELATQIQEEAVKF 253

Query:   369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428
              +         + GG  +  QL +L+ G D+++ATPGR   +++   + L  +   +LDE
Sbjct:   254 GRSS-RISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDE 312

Query:   429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI 488
              D +  D  FE  ++ ++   P   Q L  TAT P  +  K+        +++ P    I
Sbjct:   313 ADRML-DMGFEPQIRKIVKEIPTKRQTLMYTATWPKGV-RKIA-----ADLLVNPAQVNI 365

Query:   489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                ++E + + S  Q  +         +   +L+   + P SK I+FC+ K
Sbjct:   366 G-NVDELVANKSITQHIEVVAPMEKQRRLEQILR--SQEPGSKVIIFCSTK 413


>UNIPROTKB|Q8EBV7 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 252 (93.8 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 66/238 (27%), Positives = 117/238 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF  L  +  ++++L    + +P+ IQ  A P ++  +  +   Q+G+GKT A+ LP++Q
Sbjct:     2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              L  +     S   + + R ++L PT ELA QV  +    +K G   R  +  GG   + 
Sbjct:    62 LLMADNQ---SDHAAKAIRALVLVPTRELALQVQQSFVKYAK-GTDIRVGIAYGGVSIEA 117

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q      G+DVLIATPGR +  +++G L L  L   + DE D +  D  F   +Q+++  
Sbjct:   118 QQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRML-DMGFMDEIQAVLKQ 176

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
              P   Q L  +ATL   I++    +  D K +     +  +  +E+ +     D++++
Sbjct:   177 VPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTE 234


>TIGR_CMR|SO_3388 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 252 (93.8 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 66/238 (27%), Positives = 117/238 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF  L  +  ++++L    + +P+ IQ  A P ++  +  +   Q+G+GKT A+ LP++Q
Sbjct:     2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              L  +     S   + + R ++L PT ELA QV  +    +K G   R  +  GG   + 
Sbjct:    62 LLMADNQ---SDHAAKAIRALVLVPTRELALQVQQSFVKYAK-GTDIRVGIAYGGVSIEA 117

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q      G+DVLIATPGR +  +++G L L  L   + DE D +  D  F   +Q+++  
Sbjct:   118 QQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRML-DMGFMDEIQAVLKQ 176

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
              P   Q L  +ATL   I++    +  D K +     +  +  +E+ +     D++++
Sbjct:   177 VPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTE 234


>UNIPROTKB|A5A6J2 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
            CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
            UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
            GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
            Uniprot:A5A6J2
        Length = 614

 Score = 257 (95.5 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 82/272 (30%), Positives = 126/272 (46%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E      +++ + RQNF  P+ IQA  +P  + G   +   Q+GSGKTL+YLLP I 
Sbjct:    95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  +    L +     P  ++LAPT ELA QV        +     +S  + GG  +  
Sbjct:   155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q+ +L+ GV+  IATPGR +  ++ G   L      +LDE D +  D  FE  ++ ++  
Sbjct:   210 QIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQ 268

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
                  Q L  +AT P E+  +L E F    + +  G   +S       +VD   D E D+
Sbjct:   269 IRPDRQTLMWSATWPKEV-RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 327

Query:   508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                     K   L++ I     +KTIVF   K
Sbjct:   328 --------KLIRLMEEIMSEKENKTIVFVETK 351


>UNIPROTKB|G5EHR3 [details] [associations]
            symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
            EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
            EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
            Uniprot:G5EHR3
        Length = 619

 Score = 257 (95.5 bits), Expect = 5.8e-19, P = 5.8e-19
 Identities = 86/286 (30%), Positives = 133/286 (46%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F++ G    M++++    +  P+ IQA   P + +G   I   Q+GSGKT A+L+PVI +
Sbjct:   124 FEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAIHKGHDVIGIAQTGSGKTAAFLIPVINK 183

Query:   330 L--RQEELQG-----------LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
             L  + ++L             +       P VVI+ PT ELA Q  +  R L    +  R
Sbjct:   184 LMGKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVCPTRELAIQAFNEARKLCYRSM-LR 242

Query:   377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFND 435
               VV GG     Q+  +  G D+L ATPGR + F+ K  +L L  +R  ++DE D +   
Sbjct:   243 PGVVYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDKPELLNLQRVRYVVIDEADEMLT- 301

Query:   436 EDFEVALQSLISSSPVTAQ--YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE 493
              D+E  ++ ++S+     +  YL  +AT P +I +   E   +  V +  G  R      
Sbjct:   302 ADWEEDMKKIMSAGGAAQEIKYLLFSATFPKKIRDLAREHLSEDHVQLRVG--RAGSTHS 359

Query:   494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               +             ETA +NKK AL  LI   P  +TI+F N K
Sbjct:   360 NII---------QTVIETAPMNKKRALNDLINSMPPQRTIIFVNNK 396


>TIGR_CMR|SO_4034 [details] [associations]
            symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
            acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
            ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
            PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
        Length = 623

 Score = 257 (95.5 bits), Expect = 5.9e-19, P = 5.9e-19
 Identities = 62/199 (31%), Positives = 111/199 (55%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             ++F+ELG S+ ++ +L    + +P+ IQ+ +  P++ GK  +   Q+G+GKT A+ LP++
Sbjct:     6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
              ++        S++T   P++++LAPT ELA QV     S +K    F  + + GG   +
Sbjct:    66 NKVT-------SQTT---PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              QL  L+ G  V++ TPGR M  ++ G L+L  L+  +LDE D +     F   ++ ++ 
Sbjct:   116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLK-MGFIDDIEWILE 174

Query:   448 SSPVTAQYLFVTATLPVEI 466
              +P   Q    +AT+P +I
Sbjct:   175 HTPPQRQLALFSATMPEQI 193

 Score = 173 (66.0 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 56/204 (27%), Positives = 95/204 (46%)

Query:   338 LSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG 396
             L+K TS + P++++LAPT ELA QV     S +K    F  + + GG   + QL  L+ G
Sbjct:    65 LNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRG 124

Query:   397 VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYL 456
               V++ TPGR M  ++ G L+L  L+  +LDE D +     F   ++ ++  +P   Q  
Sbjct:   125 PQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLK-MGFIDDIEWILEHTPPQRQLA 183

Query:   457 FVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNK 516
               +AT+P +I     +   +   +     H     +E+  V  S  Q           NK
Sbjct:   184 LFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVS--QH----------NK 231

Query:   517 KSALLQLIEKSPVSKTIVFCNKKS 540
               AL++++E       I+F   ++
Sbjct:   232 LEALVRVLEVENTEGIIIFVRTRN 255


>UNIPROTKB|E2R4Z9 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
            Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
        Length = 569

 Score = 256 (95.2 bits), Expect = 6.1e-19, P = 6.1e-19
 Identities = 84/318 (26%), Positives = 155/318 (48%)

Query:   241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
             I NLQ +  +  K++      G   +R    F+  G  + +  +LK   +  P+ IQ   
Sbjct:   175 ILNLQEDQIENLKRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQM 234

Query:   299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
              P  + G+  + +  +GSGKT A+LLPVI R   E         S +P  +IL PT ELA
Sbjct:   235 IPVGLLGRDVLASADTGSGKTAAFLLPVITRALCE---------SKTPSALILTPTRELA 285

Query:   359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
              Q+ +  + L   G+P  +++++ GG     QL  L++ V V+IATPGR + +IK+  ++
Sbjct:   286 IQIENQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVE 344

Query:   418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD- 476
             L  ++  ++DE D +     F+  +  ++   P  +Q + V+AT+P  I     ++  + 
Sbjct:   345 LCGIKIVVVDEADTMLK-MGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQLLHNP 403

Query:   477 CKVVMG----P--GMHRI-----SPGLEEFLVDCSGDQESDKTPETAFLNKK---SALLQ 522
              +++ G    P   + +I      P  ++ L +   D++  K P   F++ K     L +
Sbjct:   404 VRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 463

Query:   523 LIEKSPVSKTIVFCNKKS 540
              ++K    K++   ++KS
Sbjct:   464 AVQKITGLKSVSIHSEKS 481


>TAIR|locus:504955106 [details] [associations]
            symbol:emb1138 "embryo defective 1138" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
            GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
            EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
            EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
            EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
            IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
            RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
            SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
            EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
            GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
            PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
            Uniprot:Q8L7S8
        Length = 748

 Score = 258 (95.9 bits), Expect = 6.6e-19, P = 6.6e-19
 Identities = 82/286 (28%), Positives = 139/286 (48%)

Query:   259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
             + + D     +  +L     + ESL+++       IQ     P ++G+  I   ++G+GK
Sbjct:    93 NVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGK 152

Query:   319 TLAYLLPVIQRLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
             TLA+ +P+I+RL +E     +   SG  P+ ++LAPT ELA QV    +       P+ S
Sbjct:   153 TLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE----SAPYLS 208

Query:   378 MV-VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
              V V GG     Q   L  GVDV++ TPGR + LI+   L+L  +   +LDE D +    
Sbjct:   209 TVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLA-V 267

Query:   437 DFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV---VMGPGMHRISPGLE 493
              FE A++S++ + P   Q +  +AT+P  +  KL   + D  +   ++G    +++ G++
Sbjct:   268 GFEEAVESILENLPTKRQSMLFSATMPTWV-KKLARKYLDNPLNIDLVGDQDEKLAEGIK 326

Query:   494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
              + +       +  T +   L   S L+ +  K    KTIVF   K
Sbjct:   327 LYAI------ATTSTSKRTIL---SDLITVYAKG--GKTIVFTQTK 361


>UNIPROTKB|I3LB32 [details] [associations]
            symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
            RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
            KEGG:ssc:100621490 Uniprot:I3LB32
        Length = 540

 Score = 255 (94.8 bits), Expect = 6.9e-19, P = 6.9e-19
 Identities = 87/326 (26%), Positives = 150/326 (46%)

Query:   233 RGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ--NFLR 290
             RGW++       + +     +++ +  A  +  S+ SF +LG    ++ +L+      +R
Sbjct:    95 RGWKN----RRARQDHFSIERKQQEAPALRNLSSKDSFADLGLEPRVLSALQEAAPEVVR 150

Query:   291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
             P+ +Q+   PP++ G+  + A ++GSGKTL Y+LP++QRL  +    L      +PR ++
Sbjct:   151 PTTVQSSTIPPLLGGRHILCAAETGSGKTLGYMLPLLQRLLGQP--SLDSCRIPAPRGLV 208

Query:   351 LAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGF-RQKTQLENLQEGVDVLIATPGRFM 408
             L P+ ELA QV +  + L S  G+  R +    G  R + QL   Q   DVL+ATPG   
Sbjct:   209 LVPSRELAEQVRAVAQPLGSSLGLQVRELGGGHGMSRIRLQLSK-QPPADVLVATPGALW 267

Query:   409 FLIKEGILQLINLRCAILDEVDILFNDEDFEVA---LQ-SLISSSPVT--------AQYL 456
               +K  ++ L  L   +LDE D L ++   E+    L+ S I+  P          AQ +
Sbjct:   268 KGLKSQLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLKDPFNPKAQLV 327

Query:   457 FVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
              V AT P  +   L +         +    +H I P +++  +   G   ++K  E   +
Sbjct:   328 LVGATFPEGVSQLLSKAACLDSLTTITSSKLHCIMPHVKQTFMRLKG---AEKVTELVQI 384

Query:   515 NKKSALLQLIEKSPVSKTIVFCNKKS 540
              K+    +          +VFCN  S
Sbjct:   385 LKQHD--RAYRTGSAGTVLVFCNSSS 408


>TAIR|locus:2010306 [details] [associations]
            symbol:EMB1586 "embryo defective 1586" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
            evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
            "plasmodesmata-mediated intercellular transport" evidence=IMP]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
            EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
            EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
            EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
            EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
            UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
            PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
            KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
            HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
            ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
            Uniprot:Q8W4E1
        Length = 551

 Score = 255 (94.8 bits), Expect = 7.3e-19, P = 7.3e-19
 Identities = 68/215 (31%), Positives = 109/215 (50%)

Query:   239 GSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
             G +  ++ +     K++         FS KSF+ELG  D +++SL+R+ F  P+ +Q+ A
Sbjct:    81 GKVRAVKNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAA 140

Query:   299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV----VILAPT 354
              P +++G   ++   +GSGKTLAYLLP++  +     +  S  +    R     +I+AP+
Sbjct:   141 VPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPS 200

Query:   355 AELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQKTQLENLQEGVD-VLIATPGRFMFLI 411
              EL  Q++     L   G   R MV  + GG  +  Q E L++    +++ TPGR   + 
Sbjct:   201 RELGMQIVREVEKL--LGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEIS 258

Query:   412 KEGILQLINLRCAILDEVDIL--FN-DEDFEVALQ 443
             K G L     R  +LDEVD L  FN  ED    L+
Sbjct:   259 KGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILE 293


>UNIPROTKB|E2R4Y9 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
            Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
        Length = 623

 Score = 256 (95.2 bits), Expect = 7.6e-19, P = 7.6e-19
 Identities = 84/318 (26%), Positives = 155/318 (48%)

Query:   241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
             I NLQ +  +  K++      G   +R    F+  G  + +  +LK   +  P+ IQ   
Sbjct:   175 ILNLQEDQIENLKRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQM 234

Query:   299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
              P  + G+  + +  +GSGKT A+LLPVI R   E         S +P  +IL PT ELA
Sbjct:   235 IPVGLLGRDVLASADTGSGKTAAFLLPVITRALCE---------SKTPSALILTPTRELA 285

Query:   359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
              Q+ +  + L   G+P  +++++ GG     QL  L++ V V+IATPGR + +IK+  ++
Sbjct:   286 IQIENQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVE 344

Query:   418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD- 476
             L  ++  ++DE D +     F+  +  ++   P  +Q + V+AT+P  I     ++  + 
Sbjct:   345 LCGIKIVVVDEADTMLK-MGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQLLHNP 403

Query:   477 CKVVMG----P--GMHRI-----SPGLEEFLVDCSGDQESDKTPETAFLNKK---SALLQ 522
              +++ G    P   + +I      P  ++ L +   D++  K P   F++ K     L +
Sbjct:   404 VRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 463

Query:   523 LIEKSPVSKTIVFCNKKS 540
              ++K    K++   ++KS
Sbjct:   464 AVQKITGLKSVSIHSEKS 481


>UNIPROTKB|Q3AFI3 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 251 (93.4 bits), Expect = 8.6e-19, P = 8.6e-19
 Identities = 67/227 (29%), Positives = 116/227 (51%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             + FK+LG    +++++    F  P+ IQ  A P ++EG + +    +G+GKT AYLLPV+
Sbjct:     2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL 61

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             QR+++ +            +V+I+ PT ELA QV      L K  +  R++ V GG   +
Sbjct:    62 QRIQRGK----------KAQVLIVTPTRELALQVADEVAKLGKY-LKVRALAVYGGQAIE 110

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q+  L++GV+V++ TPGR +  I         ++  ILDE D +  D  F   ++++++
Sbjct:   111 RQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEML-DMGFIDDIEAILN 169

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
             +     Q L  +ATLP  I   + +     K V   G  +  P + +
Sbjct:   170 TLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQ 216


>TIGR_CMR|CHY_0229 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 251 (93.4 bits), Expect = 8.6e-19, P = 8.6e-19
 Identities = 67/227 (29%), Positives = 116/227 (51%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             + FK+LG    +++++    F  P+ IQ  A P ++EG + +    +G+GKT AYLLPV+
Sbjct:     2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL 61

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             QR+++ +            +V+I+ PT ELA QV      L K  +  R++ V GG   +
Sbjct:    62 QRIQRGK----------KAQVLIVTPTRELALQVADEVAKLGKY-LKVRALAVYGGQAIE 110

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q+  L++GV+V++ TPGR +  I         ++  ILDE D +  D  F   ++++++
Sbjct:   111 RQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEML-DMGFIDDIEAILN 169

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
             +     Q L  +ATLP  I   + +     K V   G  +  P + +
Sbjct:   170 TLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQ 216


>UNIPROTKB|G3MYF0 [details] [associations]
            symbol:LOC100300937 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
            Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
        Length = 608

 Score = 255 (94.8 bits), Expect = 9.3e-19, P = 9.3e-19
 Identities = 74/262 (28%), Positives = 137/262 (52%)

Query:   279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
             +++S++R  F +P+ IQ+ ++P +++G   I   Q+G+GKTL+YL+P    +     Q +
Sbjct:   212 IMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHS---QPV 268

Query:   339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
             S+     P +++L PT ELA QV + C      G+  +S+ + GG  +K Q++++ +GVD
Sbjct:   269 SRKQRNGPGMLVLTPTRELALQVEAECSKYLYKGL--KSVCIYGGGNRKGQIQDVTKGVD 326

Query:   399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
             ++IATPGR   L     + L ++   +LDE D +  D  FE  +  ++       Q +  
Sbjct:   327 IIIATPGRLNDLQMNNFVNLRSITYLVLDEADKML-DLGFEHQIMKILLDVRPDRQTVMT 385

Query:   459 TATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKS 518
             TA+ P +   +L + +    +++  G       L+   V+ +  Q    T E     K+S
Sbjct:   386 TASWP-DSTRRLAQSYLKQPMIVYVGT------LDLVTVN-TVKQNIIVTTEE---EKRS 434

Query:   519 ALLQLIEK-SPVSKTIVFCNKK 539
              + + ++  SP  K IVF ++K
Sbjct:   435 LVKEFLQSLSPKDKVIVFVSRK 456


>TAIR|locus:2076436 [details] [associations]
            symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
            EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
            RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
            SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
            EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
            GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
            ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
            Uniprot:Q9M2F9
        Length = 646

 Score = 255 (94.8 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 71/245 (28%), Positives = 121/245 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E+   + +  +++R  +++P+ +Q  A P +  G+  +   Q+GSGKT A+  P+I 
Sbjct:   147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206

Query:   329 RLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
              + +++     +   G  P  VIL+PT ELA Q+    R  S + GV  + +V  GG   
Sbjct:   207 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV--KVVVAYGGTPV 264

Query:   387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
               Q+  L+ GVD+L+ATPGR   L++ G + L  +R   LDE D +  D  FE  ++ ++
Sbjct:   265 NQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRML-DMGFEPQIRKIV 323

Query:   447 SSS----PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
                    P   Q +  +AT P EI  +L   F    + +  G  R+    +  +      
Sbjct:   324 QQMDMPPPGVRQTMLFSATFPREI-QRLASDFLSNYIFLAVG--RVGSSTDLIVQRVEFV 380

Query:   503 QESDK 507
              +SDK
Sbjct:   381 HDSDK 385


>ZFIN|ZDB-GENE-031030-3 [details] [associations]
            symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
            HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
            RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
            STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
            NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
        Length = 468

 Score = 251 (93.4 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 63/197 (31%), Positives = 105/197 (53%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+ LG S+++I+  K+    RP+ +Q    P +++G+ C+   ++GSGKT A++LPV+Q
Sbjct:     3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             +L  E+  G+          ++L PT ELA Q+    R L K  +  +  ++ GG    T
Sbjct:    63 KL-SEDPYGVF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVT 112

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAILDEVDILFND--EDFEVALQSL 445
             Q   L +   V++ATPGR    I+    + L  ++  I+DE D L      DF   L+ +
Sbjct:   113 QGLELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVI 172

Query:   446 ISSSPVTAQYLFVTATL 462
             +S+ P   Q L  +ATL
Sbjct:   173 LSAVPAKRQTLLFSATL 189


>FB|FBgn0015331 [details] [associations]
            symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
            "establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
            system development" evidence=NAS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
            evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
            GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
            EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
            ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
            MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
            EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
            UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
            OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
            NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
        Length = 619

 Score = 254 (94.5 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 71/245 (28%), Positives = 119/245 (48%)

Query:   231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
             I   W+    I  +  E  +  +   +   +G+  S   +SF+E+     ++  L  +  
Sbjct:   138 IKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGI 197

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
               P+ IQ    P V+ G+  I    +GSGKTL ++LPVI    ++E   L    +  P  
Sbjct:   198 KNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYS-LPFERNEGPYG 256

Query:   349 VILAPTAELASQ---VLSN-CRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIAT 403
             +I+ P+ ELA Q   ++ +  + L  CG+P  RS +  GG      L+ +  GV +++AT
Sbjct:   257 LIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVAT 316

Query:   404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
             PGR M ++ + IL L   R   +DE D +  D  FE  ++++ S      Q L  +AT+P
Sbjct:   317 PGRLMDMLDKKILTLDMCRYLCMDEADRMI-DMGFEEDVRTIFSFFKGQRQTLLFSATMP 375

Query:   464 VEIYN 468
              +I N
Sbjct:   376 KKIQN 380


>ZFIN|ZDB-GENE-030131-667 [details] [associations]
            symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
            pancreas development" evidence=IMP] [GO:0007420 "brain development"
            evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
            evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
            GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
            GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
            EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
            ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
        Length = 1035

 Score = 266 (98.7 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 61/199 (30%), Positives = 109/199 (54%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K++ + G S  ++ +LK+ N+ +P+ IQA A P ++ G+  I   ++GSGKT+A+LLP+ 
Sbjct:   357 KTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 416

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + +  +   G ++     P  VI+ PT ELA Q+   C+  SK  +  R + V GG    
Sbjct:   417 RHILDQRPVGEAEG----PLAVIMTPTRELALQITKECKKFSK-SLALRVVCVYGGTGIS 471

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     ++DE D +F D  FE  +  
Sbjct:   472 EQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMF-DMGFEPQVMR 530

Query:   445 LISSSPVTAQYLFVTATLP 463
             ++ +     Q +  +AT P
Sbjct:   531 IVDNVRPDRQTVMFSATFP 549

 Score = 38 (18.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   195 ELGEHIVDNDVPAESIDKNISDYNSRSNK--HEKSG 228
             E+GE +   D   E + + +  +N  + K  ++K G
Sbjct:   208 EVGEEVDPLDAYMEEVKEEVKKFNMGTMKGANDKKG 243


>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
            symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
            RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
            Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
            NextBio:20787456 Uniprot:E7F1G8
        Length = 483

 Score = 252 (93.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 64/215 (29%), Positives = 111/215 (51%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             PK     + D        F++      ++  +    + +PS IQ  + P  + G+  +  
Sbjct:    72 PKDTRVRTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 131

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GK+ AYL+P+++R+       L K      + ++L PT ELA QV     ++SK 
Sbjct:   132 AKNGTGKSGAYLIPLLERI------DLKKDYI---QAIVLVPTRELALQVSQISINMSKH 182

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
                 + M  TGG   +  +  L E V V+IATPGR + LIK+G+ ++  ++ A++DE D 
Sbjct:   183 LGGIKVMATTGGTNLRDDIMRLDEIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADK 242

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + +DF V ++ +IS  P   Q L  +AT P+ +
Sbjct:   243 LLS-QDFVVLIEDIISFLPKKRQILLYSATFPISV 276

 Score = 188 (71.2 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
 Identities = 56/191 (29%), Positives = 96/191 (50%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + ++L PT ELA QV     ++SK     + M  TGG   +  +  L E V V+IATPGR
Sbjct:   158 QAIVLVPTRELALQVSQISINMSKHLGGIKVMATTGGTNLRDDIMRLDEIVHVIIATPGR 217

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + LIK+G+ ++  ++ A++DE D L + +DF V ++ +IS  P   Q L  +AT P+ +
Sbjct:   218 ILDLIKKGVAKVDKVQMAVMDEADKLLS-QDFVVLIEDIISFLPKKRQILLYSATFPISV 276

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
                +       K +  P  + I+  ++E  +       +  T       K   L  L  +
Sbjct:   277 QKFMT------KHLQKP--YEINL-MDELTLKGITQYYAYVTER----QKVHCLNTLFSR 323

Query:   527 SPVSKTIVFCN 537
               ++++I+FCN
Sbjct:   324 LQINQSIIFCN 334

 Score = 40 (19.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query:   125 SQPTTSAPVLRNNDCSIPSKKGVI 148
             S P+   PV+     SIP   G I
Sbjct:    35 STPSGKTPVMPQKGSSIPQSSGGI 58


>CGD|CAL0004832 [details] [associations]
            symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
            evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
            [GO:0071470 "cellular response to osmotic stress" evidence=IEA]
            [GO:0031137 "regulation of conjugation with cellular fusion"
            evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
            ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
            KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
        Length = 672

 Score = 259 (96.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 96/328 (29%), Positives = 148/328 (45%)

Query:   225 EKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIES 282
             E  GT  D  ++S G I+   Y+  D P +     A GD       SF      + ++E+
Sbjct:   149 ELFGTADDSHFQSSG-INFDNYD--DIPVE-----ASGDKVPEPITSFTAPPLDELLVEN 200

Query:   283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE------ELQ 336
             ++   F +P+ +Q  + P V  G+  +   Q+GSGKT  +L PV+     +      E  
Sbjct:   201 IQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESN 260

Query:   337 GLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKTQLENLQE 395
             G   S    P ++++APT EL SQ+    +  S +  V  R+ VV GG     Q+ N+  
Sbjct:   261 GAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWV--RACVVYGGADIGQQMRNMDR 318

Query:   396 GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA-- 453
             G D+L+ATPGR   L+  G + L N+R  +LDE D +  D  FE  ++ ++    + A  
Sbjct:   319 GCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRML-DMGFEPQIRYIVEECDMPAVK 377

Query:   454 --QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET 511
               Q L  +AT P +I   L   F    V +  G  R+     E +       E D+    
Sbjct:   378 DRQTLMFSATFPRDI-QMLARDFLKDYVFLSVG--RVG-STSENITQKILYVEDDE---- 429

Query:   512 AFLNKKSALLQLIEKSPVSKTIVFCNKK 539
                 KKS +L L+  +    TIVF   K
Sbjct:   430 ----KKSVILDLLSANENGLTIVFTETK 453

 Score = 39 (18.8 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query:   213 NISDYNSRSNKHEKSGTKIDRG-WRSGG 239
             N   +N+R N ++  G +  RG + +GG
Sbjct:    92 NNGGFNNRGNYNQSFGGRGGRGGFNNGG 119


>TAIR|locus:2176192 [details] [associations]
            symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
            OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
            RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
            SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
            EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
            GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
            ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
            Uniprot:Q9LU46
        Length = 591

 Score = 253 (94.1 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 89/336 (26%), Positives = 156/336 (46%)

Query:   141 IPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE-GRLSKTTPSLENFRELGEH 199
             I  +KG  S     +A + K    K S + + T   LK++   +S T   +   +E+ EH
Sbjct:    28 ILQRKGKASELEE-EADKEKLAEAKPSLLVQAT--QLKRDVPEVSATEQIILQEKEMMEH 84

Query:   200 IVDND--VPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHK 257
             + D    +    + K I+ Y             +  GW+    I  +  +  D  +++  
Sbjct:    85 LSDKKTLMSVRELAKGIT-YTE----------PLLTGWKPPLHIRKMSSKQRDLIRKQWH 133

Query:   258 YSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSG 315
                +GD      K+FK++     ++++LK +  ++P+ IQ    P ++ G+  I    +G
Sbjct:   134 IIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTG 193

Query:   316 SGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS----LSKC 371
             SGKTL ++LP+I    QEE+  +  +    P  +I+ P+ ELA Q           L + 
Sbjct:   194 SGKTLVFVLPMIMIALQEEMM-MPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEA 252

Query:   372 GVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
             G P  RS++  GG   ++QLE ++ GV +++ATPGR   ++ +  + L   R   LDE D
Sbjct:   253 GYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEAD 312

Query:   431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              L  D  FE  ++ +        Q L  +AT+P +I
Sbjct:   313 RLV-DLGFEDDIREVFDHFKSQRQTLLFSATMPTKI 347


>FB|FBgn0086130 [details] [associations]
            symbol:KH1 "KH1" species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0016063 "rhodopsin
            biosynthetic process" evidence=IMP] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
            GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
            EMBL:AY058512 RefSeq:NP_608544.1 UniGene:Dm.4179 SMR:Q9VPT3
            EnsemblMetazoa:FBtr0078009 GeneID:33254 KEGG:dme:Dmel_CG3561
            UCSC:CG3561-RA CTD:33254 FlyBase:FBgn0086130 InParanoid:Q9VPT3
            OMA:ILCSAET OrthoDB:EOG4X69R7 GenomeRNAi:33254 NextBio:782677
            Uniprot:Q9VPT3
        Length = 536

 Score = 252 (93.8 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 74/251 (29%), Positives = 128/251 (50%)

Query:   301 PVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359
             PVV G   C++A ++G GKT+ YLLP++ +L Q+E+  +++    +PRV+IL P  ELA+
Sbjct:   141 PVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEV--VTERKLNTPRVLILTPGRELAT 198

Query:   360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLI 419
             Q+      L++ G   +   + GG  ++  +    E VD+L+AT G    L+  GI ++ 
Sbjct:   199 QIAGVTEKLTQ-GTNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVTTGIYRME 257

Query:   420 NLRCAILDEVDILFND---EDFEVALQS----LISSSPVTAQYLFVTATLPV---EIYNK 469
              +R  +LDE D L +D   +     L+     L+       Q +  +AT+P    EI +K
Sbjct:   258 QVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREILHK 317

Query:   470 LVEVFPDCKVVMGPGMHRI-SPGLEEFLVDCSGDQESDKTPETAF-LNKKSALLQLIEKS 527
             +++V    + V+ P +HR+ S   ++FL     D+ +         L K+  L+    KS
Sbjct:   318 VIDV-DTIREVVSPHLHRLMSHVTQKFLRLSKADRPATLLSLVKHDLAKRRPLIVFSNKS 376

Query:   528 PVSKTI-VFCN 537
               S  + +F N
Sbjct:   377 TTSDFVSIFLN 387


>MGI|MGI:1915247 [details] [associations]
            symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
            GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
            EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
            RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
            ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
            PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
            UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
            ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
            Genevestigator:Q9DBN9 Uniprot:Q9DBN9
        Length = 619

 Score = 253 (94.1 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 68/229 (29%), Positives = 118/229 (51%)

Query:   241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
             I  L+ +  +  KQ+   S  G   +R    F+  G  + + ++LK+  +  P+ IQ   
Sbjct:   174 IVTLKEDQIETLKQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQM 233

Query:   299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
              P  + G+  + +  +GSGKT A+LLPVI R   E+          +P  +IL PT ELA
Sbjct:   234 IPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDK---------TPSALILTPTRELA 284

Query:   359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
              Q+    + L   G+P  +++++ GG     QL  L++ V V+IATPGR + +IK+  + 
Sbjct:   285 IQIERQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVS 343

Query:   418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L  ++  ++DE D +     F+  +  ++  +P   Q + V+AT+P  I
Sbjct:   344 LSGIKIVVVDEADTMLK-MGFQQQVLDVLEHTPGDCQTILVSATIPDSI 391


>ZFIN|ZDB-GENE-040825-3 [details] [associations]
            symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
            GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
            EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
            UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
            GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
            Uniprot:Q6DRE7
        Length = 557

 Score = 252 (93.8 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 77/242 (31%), Positives = 123/242 (50%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F E+G  D ++++L    + +P+ IQ  A P  +EGK  +   ++GSGKT AY +P+IQR
Sbjct:     8 FHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQR 67

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
             +   + Q + +    + R V+L PT EL  QV +  R L+  C    R   ++G      
Sbjct:    68 VLTSK-QTVREQ---AVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKADLSA 123

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQL-INLRCAILDEVDILFNDEDFEVALQSLIS 447
             Q   L E  D++++TP R    I    LQL  +L   ++DE D+LF+   FE  L++L+ 
Sbjct:   124 QKPILMEKPDIVVSTPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSF-GFEADLKNLLC 182

Query:   448 SSPVTAQYLFVTATL--PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
               P   Q   ++ATL   V+   +LV   P    + G  +   S  L++F + C   +E 
Sbjct:   183 HLPKIYQAFLMSATLNDDVQALKELVLHNPVTLKLQGSQLPDSSQ-LQQFSIKC---EEE 238

Query:   506 DK 507
             DK
Sbjct:   239 DK 240


>UNIPROTKB|E1BXX5 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
            RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
            Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
            NextBio:20826688 Uniprot:E1BXX5
        Length = 625

 Score = 253 (94.1 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 62/198 (31%), Positives = 107/198 (54%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+  G  + +  +LK   +  P+ IQ    P  + G+  + +  +GSGKT A+LLPVI +
Sbjct:   211 FEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIMK 270

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQKT 388
             +  E         + +P  +ILAPT ELA Q+    + L   G+P  R++++ GG     
Sbjct:   271 VLNE---------TETPSALILAPTRELAIQIERQAKELM-AGLPNMRTVLLVGGLPLPP 320

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             QL  L++ V V+IATPGR + ++++  +QL  ++  ++DEVD +     F+  +  ++  
Sbjct:   321 QLHRLKQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLK-MGFQQQVLDILED 379

Query:   449 SPVTAQYLFVTATLPVEI 466
                  Q + V+AT+PV I
Sbjct:   380 ISHDHQTILVSATIPVGI 397


>UNIPROTKB|F1NTK9 [details] [associations]
            symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003714 "transcription corepressor
            activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
            receptor binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
            EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
            Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
        Length = 822

 Score = 255 (94.8 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 63/194 (32%), Positives = 107/194 (55%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ +G S  + + + ++ +  P+ IQ    P ++ G+  +   ++GSGKT  +LLP+ +R
Sbjct:    38 FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFER 97

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L+       + S SG+ R +IL+PT ELA Q L   + L K     ++ +V GG + + Q
Sbjct:    98 LK-------APSPSGA-RALILSPTRELALQTLKFTKELGKF-TGLKTALVLGGDKMEDQ 148

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                L E  D++IATPGR + +  E  L+L ++   + DE D LF +  F   LQ +++  
Sbjct:   149 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEILARL 207

Query:   450 PVTAQYLFVTATLP 463
             P + Q +  +ATLP
Sbjct:   208 PGSHQTVLFSATLP 221


>TAIR|locus:2127043 [details] [associations]
            symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
            "virus-host interaction" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
            GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
            ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
            IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
            RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
            UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
            PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
            EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
            GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
            Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
        Length = 505

 Score = 253 (94.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 78/286 (27%), Positives = 139/286 (48%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             P  R++ + D        F++      ++  +  + F RPS IQ  + P  + G+  +  
Sbjct:   116 PDTRYR-TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILAR 174

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GKT A+ +PV++++ Q+         +   + VI+ PT ELA Q    C+ L K 
Sbjct:   175 AKNGTGKTAAFCIPVLEKIDQD---------NNVIQAVIIVPTRELALQTSQVCKELGK- 224

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
              +  + MV TGG   K  +  L + V +L+ TPGR + L K+G+  L +    ++DE D 
Sbjct:   225 HLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADK 284

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG 491
             L + E F+ +++ LIS  P + Q L  +AT PV + +     F D + +  P +  +   
Sbjct:   285 LLSQE-FQPSVEHLISFLPESRQILMFSATFPVTVKD-----FKD-RFLTNPYVINL--- 334

Query:   492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
             ++E  +   G  +     E     K   L  L  K  ++++I+FCN
Sbjct:   335 MDELTL--KGITQFYAFVEER--QKIHCLNTLFSKLQINQSIIFCN 376

 Score = 39 (18.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query:   201 VDNDVPAESIDKNISDYNSR 220
             V+  V +E ID N  D+ +R
Sbjct:    91 VEKTVQSEVIDPNSEDWKAR 110


>MGI|MGI:1919240 [details] [associations]
            symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003714 "transcription corepressor activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005102 "receptor binding"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
            GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
            EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
            UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
            PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
            Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
            UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
            Genevestigator:Q8K4L0 Uniprot:Q8K4L0
        Length = 874

 Score = 255 (94.8 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 62/194 (31%), Positives = 105/194 (54%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ +G S  + + + ++ +  P+ IQ    P +++GK  +   ++GSGKT  +LLP+ +R
Sbjct:    97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L+    Q      +G+ R +IL+PT ELA Q +   + L K     ++ ++ GG + + Q
Sbjct:   157 LKARSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLKTALILGGDKMEDQ 208

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                L E  D++IATPGR + +  E  L+L ++   + DE D LF +  F   LQ +I   
Sbjct:   209 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIGRL 267

Query:   450 PVTAQYLFVTATLP 463
             P   Q +  +ATLP
Sbjct:   268 PGGHQTVLFSATLP 281


>RGD|1562539 [details] [associations]
            symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
            species:10116 "Rattus norvegicus" [GO:0003714 "transcription
            corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
            "RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
            evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
            GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000075100 IPI:IPI00193685
            Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
            Uniprot:D3ZHY6
        Length = 906

 Score = 255 (94.8 bits), Expect = 2.0e-18, P = 2.0e-18
 Identities = 62/194 (31%), Positives = 105/194 (54%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ +G S  + + + ++ +  P+ IQ    P +++GK  +   ++GSGKT  +LLP+ +R
Sbjct:    97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L+    Q      +G+ R +IL+PT ELA Q +   + L K     ++ ++ GG + + Q
Sbjct:   157 LKARSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLKTALILGGDKMEDQ 208

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                L E  D++IATPGR + +  E  L+L ++   + DE D LF +  F   LQ +I   
Sbjct:   209 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIGRL 267

Query:   450 PVTAQYLFVTATLP 463
             P   Q +  +ATLP
Sbjct:   268 PGGHQTVLFSATLP 281


>RGD|1307306 [details] [associations]
            symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003725 "double-stranded RNA binding"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
            to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
            RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
            STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
            Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
            UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
            Uniprot:Q3B8Q1
        Length = 782

 Score = 254 (94.5 bits), Expect = 2.0e-18, P = 2.0e-18
 Identities = 85/305 (27%), Positives = 142/305 (46%)

Query:   172 KTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKI 231
             K+  + K++  L K  PS +      E   + +  A    K      +  +  EKS    
Sbjct:    90 KSKTSKKKKEPLEKKAPSAKTKEMKAEEPSEEEADAPKPKKTKKGKEANGDVGEKSP--- 146

Query:   232 DRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRK-SFKELGCSDYMIESLKRQ--NF 288
               G ++G S        T  P +  +   +     ++ +F     S+  ++ LK +  NF
Sbjct:   147 --GLKNGLSHPKPDSSSTQAPGEESETEKEIPVEQKEGAFSNFPISEETVKLLKARGVNF 204

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG-SPR 347
             L P  IQA  F  V  GK  I   ++G+GKT ++ +P+I++L+     GL +   G +P+
Sbjct:   205 LFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQG----GLQERKRGRAPQ 258

Query:   348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
             V++LAPT ELA+QV  +   ++K           GG     Q+E ++ G+D+L+ TPGR 
Sbjct:   259 VLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTPYGGQIERMRSGIDILVGTPGRI 315

Query:   408 MFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
                ++ G L L  L+  +LDEVD +    F D+  E+   +    S    Q L  +AT P
Sbjct:   316 KDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCP 375

Query:   464 VEIYN 468
               ++N
Sbjct:   376 HWVFN 380


>DICTYBASE|DDB_G0292992 [details] [associations]
            symbol:helA "putative RNA helicase" species:44689
            "Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
            GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
            RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
            EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
            OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
        Length = 1091

 Score = 256 (95.2 bits), Expect = 2.0e-18, P = 2.0e-18
 Identities = 73/273 (26%), Positives = 133/273 (48%)

Query:   191 ENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTD 250
             + F    E   D++  A+  +KN  + ++ + K +KS  K +       S    +  P D
Sbjct:   159 DQFNSEDEEFYDDEKQAKKSNKN-KNADADNKKSKKSNKKEEIE-----SSEKFESFPMD 212

Query:   251 CPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
                ++ + +          F+ +  +  +++++ ++ F  P+ IQ  + P +++G   + 
Sbjct:   213 ENNEQEEETTSKKKKKTGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVG 272

Query:   311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
               ++GSGKT A+++P+IQ+L          ST+   R VIL+PT ELA Q     +  S+
Sbjct:   273 MARTGSGKTGAFVIPMIQKLGDH-------STTVGVRAVILSPTRELAIQTFKVVKDFSQ 325

Query:   371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
              G   R++++ GG   + Q  +L    D++IATPGR M  + E  + L  ++  + DE D
Sbjct:   326 -GTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLLETGMSLSKVQYIVFDEAD 384

Query:   431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
              LF +  F   L  ++S      Q L  +ATLP
Sbjct:   385 RLF-EMGFNEQLTEILSKLSENRQTLLFSATLP 416


>UNIPROTKB|F1SUG7 [details] [associations]
            symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
            [GO:0009615 "response to virus" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
            OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
            Uniprot:F1SUG7
        Length = 855

 Score = 254 (94.5 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 99/368 (26%), Positives = 168/368 (45%)

Query:   122 KDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEG 181
             K+   P T   V++N +   PS    +      K +++K   +    +G+K+ N      
Sbjct:   105 KEVVSPKTKK-VIKNEE---PS----VEEIDAPKPKKMKKEKEMNGGIGEKSANLKNGFS 156

Query:   182 RLSKTTPSLENFRELGEHIVDNDVPAES--IDKNIS---DYNSRSNKHEKSGTKIDRG-- 234
                  + S E   E     ++    ++   +D+++    DY    N++  S      G  
Sbjct:   157 HSGLDSDSKEAATEESNSELEQKQSSKKNRLDQHLKFFLDYKKFKNQNRNSLNYSSVGHS 216

Query:   235 --WRSGGS--IHNLQYEPTDCPKQRHKYSADGDFFS--RK--SFKELGCSDYMIESLKRQ 286
               + S G+  I  + +   D P +   +S D +  S  +K  +F     S+  I+ LK +
Sbjct:   217 DFFLSNGANMIIIISFSNLDLPAEVFVFSVDLEEISVEQKEGAFSNFPISEETIKLLKAR 276

Query:   287 N--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344
                FL P  IQA  F  V  GK  I   ++G+GKT ++ +P+I++L Q ELQ   +    
Sbjct:   277 GVTFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKL-QGELQ--DRKRGR 331

Query:   345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404
             +P+V++LAPT ELASQV  +   ++K           GG     Q++ ++ G+D+L+ TP
Sbjct:   332 APQVLVLAPTRELASQVSRDFSDITK---KLAVACFYGGTPYGGQIDRMRNGIDILVGTP 388

Query:   405 GRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQSLISSSPVTAQYLFVTA 460
             GR    ++   L L  L+  +LDEVD +    F D+  E+   +    S    Q L  +A
Sbjct:   389 GRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSA 448

Query:   461 TLPVEIYN 468
             T P  +YN
Sbjct:   449 TCPHWVYN 456


>UNIPROTKB|Q9Y6V7 [details] [associations]
            symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
            HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
            RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
            SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
            DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
            Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
            CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
            PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
            PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
            Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
            GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
        Length = 483

 Score = 249 (92.7 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 61/196 (31%), Positives = 101/196 (51%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F ELG S +++E  ++    +P+ +Q    P ++EG+ C+   ++GSGKT A++LP++Q+
Sbjct:     4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L  E+  G+          ++L PT ELA Q+    R L K  +  +  ++ GG     Q
Sbjct:    64 L-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVAQ 113

Query:   390 LENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSLI 446
                L     V+IATPGR    L       +  +R  ++DE D L      DF V L++++
Sbjct:   114 ALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAIL 173

Query:   447 SSSPVTAQYLFVTATL 462
             ++ P   Q L  +ATL
Sbjct:   174 AAVPARRQTLLFSATL 189


>UNIPROTKB|F1S7D9 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
            RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
            GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
        Length = 483

 Score = 249 (92.7 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 61/196 (31%), Positives = 101/196 (51%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F ELG S +++E  ++    +P+ +Q    P ++EG+ C+   ++GSGKT A++LP++Q+
Sbjct:     4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L  E+  G+          ++L PT ELA Q+    R L K  +  +  ++ GG     Q
Sbjct:    64 L-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVAQ 113

Query:   390 LENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSLI 446
                L     V+IATPGR    L       +  +R  ++DE D L      DF V L++++
Sbjct:   114 ALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAIL 173

Query:   447 SSSPVTAQYLFVTATL 462
             ++ P   Q L  +ATL
Sbjct:   174 AAVPARRQTLLFSATL 189


>DICTYBASE|DDB_G0291804 [details] [associations]
            symbol:ddx6 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
            ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
            EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
            OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
        Length = 423

 Score = 247 (92.0 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 62/215 (28%), Positives = 106/215 (49%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             P+   + + D        F +L     ++  +  + +++PS IQ  A P  + G+  +  
Sbjct:    33 PRDERRQTEDVTATEGNDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMAR 92

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GKT ++L+P +++         +  T    +V+IL PT ELA Q    C+ L K 
Sbjct:    93 AKNGTGKTASFLIPALEK---------TDPTKDVIQVLILVPTRELALQTSQVCKELGKY 143

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
              +  + M  TGG   K  +  L   V +L+ATPGR + L ++ +  L N    I+DE D 
Sbjct:   144 -MNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADK 202

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + E F+  ++ LI+  P   Q L  +AT PV +
Sbjct:   203 LLSQE-FQPLVEQLINFLPQQRQILLFSATFPVTV 236

 Score = 174 (66.3 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 59/194 (30%), Positives = 91/194 (46%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             +V+IL PT ELA Q    C+ L K  +  + M  TGG   K  +  L   V +L+ATPGR
Sbjct:   119 QVLILVPTRELALQTSQVCKELGKY-MNVQVMASTGGTSLKDDIMRLYNPVHILVATPGR 177

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + L ++ +  L N    I+DE D L + E F+  ++ LI+  P   Q L  +AT PV  
Sbjct:   178 VLDLAQKNVANLSNCHTMIMDEADKLLSQE-FQPLVEQLINFLPQQRQILLFSATFPVT- 235

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKS---ALLQL 523
                 V+ F +         H +    E  L++         T   AF+ ++     L  L
Sbjct:   236 ----VKSFKE---------HYLQQAFEINLMEEL--TLKGVTQYYAFVEERQKIHCLNTL 280

Query:   524 IEKSPVSKTIVFCN 537
               K  ++++I+FCN
Sbjct:   281 FSKLQINQSIIFCN 294


>ASPGD|ASPL0000077157 [details] [associations]
            symbol:AN10557 species:162425 "Emericella nidulans"
            [GO:0071470 "cellular response to osmotic stress" evidence=IEA]
            [GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
            [GO:0031137 "regulation of conjugation with cellular fusion"
            evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            [GO:0010628 "positive regulation of gene expression" evidence=IEA]
            [GO:0097308 "cellular response to farnesol" evidence=IEP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0033592 "RNA strand annealing activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
            PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
        Length = 668

 Score = 246 (91.7 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 64/203 (31%), Positives = 104/203 (51%)

Query:   277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ 336
             D++I ++    +  P+ +Q  + P V+ G+  +   Q+GSGKT  +L P++ +  Q    
Sbjct:   195 DHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPA 254

Query:   337 GLSKSTSGS--------PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQK 387
                 S +G         P  +ILAPT EL SQ+    R  + +  V  R  VV GG    
Sbjct:   255 APPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWV--RPCVVYGGADIG 312

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
             +QL  ++ G D+L+ATPGR + LI+ G + L+N++  ILDE D +  D  FE  ++ ++ 
Sbjct:   313 SQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRML-DMGFEPQIRRIVE 371

Query:   448 SSPVT----AQYLFVTATLPVEI 466
                +      Q L  +AT P +I
Sbjct:   372 GEDMPNVNDRQTLMFSATFPRDI 394

 Score = 51 (23.0 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query:    29 NSNTDKLMNKCVLPLLNPNPVGRPG 53
             N+N+     +   PL NPN  G PG
Sbjct:    90 NTNSGWTATEAGRPLFNPNAYGNPG 114


>UNIPROTKB|E2RBM7 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
            EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
            Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
            NextBio:20858886 Uniprot:E2RBM7
        Length = 488

 Score = 249 (92.7 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 61/196 (31%), Positives = 101/196 (51%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F ELG S +++E  ++    +P+ +Q    P ++EG+ C+   ++GSGKT A++LP++Q+
Sbjct:     4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L  E+  G+          ++L PT ELA Q+    R L K  +  +  ++ GG     Q
Sbjct:    64 L-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVAQ 113

Query:   390 LENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSLI 446
                L     V+IATPGR    L       +  +R  ++DE D L      DF V L++++
Sbjct:   114 ALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAIL 173

Query:   447 SSSPVTAQYLFVTATL 462
             ++ P   Q L  +ATL
Sbjct:   174 AAVPTRRQTLLFSATL 189


>DICTYBASE|DDB_G0275443 [details] [associations]
            symbol:helB1 "putative RNA splicing factor"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
            reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
            GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
            EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
            ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
            GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
            ProtClustDB:CLSZ2500419 Uniprot:Q553B1
        Length = 1151

 Score = 260 (96.6 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 66/233 (28%), Positives = 121/233 (51%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             +S+ + G ++ +   LK+  + +P+ IQA   P ++ G+  I   ++GSGKTLA+LLP+ 
Sbjct:   509 QSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMF 568

Query:   328 QRLRQEELQGLSKSTSGSPRV-VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
             + +  +      KS  G   + +I++PT ELA Q+   C+  SK  +  R+  V GG   
Sbjct:   569 RHILAQP-----KSAPGEGMIALIMSPTRELALQIHVECKKFSKV-LGLRTACVYGGASI 622

Query:   387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA---ILDEVDILFNDEDFEVALQ 443
               Q+  L+ G D+++ TPGR + ++     ++ NLR     +LDE D +F D  F   + 
Sbjct:   623 SEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMF-DMGFGPQIN 681

Query:   444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496
              ++ S     Q +  +AT P ++ N   ++      ++  G   +S  +E+F+
Sbjct:   682 CIVDSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFV 734

 Score = 43 (20.2 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query:   211 DKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNL-QYEPTDCPKQRHKYS 259
             + N ++ N+ +N +  +G + DR + S     N  Q  P    +Q+   S
Sbjct:    56 NNNNNNNNNNNNNNNGNGYRDDRNYSSQNKYQNHHQQSPPQQQQQQQNSS 105


>ASPGD|ASPL0000044206 [details] [associations]
            symbol:AN1949 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
            preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
            "preribosome, large subunit precursor" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
            GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
            ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
            EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
            OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
        Length = 609

 Score = 251 (93.4 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 93/341 (27%), Positives = 164/341 (48%)

Query:   180 EGRLSKTTPSLENFR--ELGEHIVDNDV---------PAESIDKNISDYNSRSNKHEKSG 228
             EG+ ++TT  L   +  EL + +V  +          P++  +++ S+   +  + EK  
Sbjct:    41 EGKATETTTELTKDKDVELAKKVVKEEAQKKRKVSHSPSDE-EESESEDEEKKEEDEKDN 99

Query:   229 TKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNF 288
              K D G  +   + ++  +    P+       DG     K F ELG S+  ++ +K   F
Sbjct:   100 VKEDSGKANVPDLPSV--DAVSLPQP------DG---GPKKFTELGLSEKTLQGIKEMGF 148

Query:   289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
                ++IQ    PP++ G+  + A ++GSGKTLA+L+P I+ L    L+   ++ +G   V
Sbjct:   149 ETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML--SALRFKPRNGTG---V 203

Query:   349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
             ++++PT ELA Q+    R L         +V+ GG  ++ + E L +GV++LIATPGR +
Sbjct:   204 IVVSPTRELALQIFGVARELLTAHSQTYGIVI-GGANRRAEAEKLTKGVNLLIATPGRLL 262

Query:   409 FLIKE--GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQY--LF-VTATLP 463
               ++   G +   NL+  ++DE D +  +  FE  ++ +I   P   +   LF  T T  
Sbjct:   263 DHLQNTPGFV-FKNLKTLVIDEADRIL-EVGFEDEMRQIIKILPNEDRQTMLFSATQTTK 320

Query:   464 VEIYNKL-VEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
             VE   ++ +   P    V     H    GLE+  V C  D+
Sbjct:   321 VEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADK 361


>UNIPROTKB|Q7L014 [details] [associations]
            symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
            GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
            IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
            ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
            MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
            PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
            Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
            KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
            HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
            PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
            InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
            NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
            CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
            Uniprot:Q7L014
        Length = 1031

 Score = 263 (97.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 62/199 (31%), Positives = 105/199 (52%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KS+ + G S  ++ SLK+  + +P+ IQ  A P ++ G+  I   ++GSGKT+A+LLP+ 
Sbjct:   372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + +  +     S      P  VI+ PT ELA Q+   C+  SK  +  R + V GG    
Sbjct:   432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     +LDE D +F D  FE  +  
Sbjct:   487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMF-DMGFEPQVMR 545

Query:   445 LISSSPVTAQYLFVTATLP 463
             ++ +     Q +  +AT P
Sbjct:   546 IVDNVRPDRQTVMFSATFP 564

 Score = 38 (18.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query:   197 GEHIVDNDVPAESIDKNISDYNSRSNK-----HEKSGTKIDR 233
             GE +   D   E + + +  +N RS K      +KSG  + +
Sbjct:   222 GEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTK 263


>UNIPROTKB|F1MX40 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
            EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
            Uniprot:F1MX40
        Length = 1032

 Score = 263 (97.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 62/199 (31%), Positives = 105/199 (52%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KS+ + G S  ++ SLK+  + +P+ IQ  A P ++ G+  I   ++GSGKT+A+LLP+ 
Sbjct:   372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + +  +     S      P  VI+ PT ELA Q+   C+  SK  +  R + V GG    
Sbjct:   432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     +LDE D +F D  FE  +  
Sbjct:   487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMF-DMGFEPQVMR 545

Query:   445 LISSSPVTAQYLFVTATLP 463
             ++ +     Q +  +AT P
Sbjct:   546 IVDNVRPDRQTVMFSATFP 564

 Score = 38 (18.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query:   197 GEHIVDNDVPAESIDKNISDYNSRSNK-----HEKSGTKIDR 233
             GE +   D   E + + +  +N RS K      +KSG  + +
Sbjct:   222 GEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTK 263


>UNIPROTKB|F1PK90 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
            Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
        Length = 1032

 Score = 263 (97.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 62/199 (31%), Positives = 105/199 (52%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KS+ + G S  ++ SLK+  + +P+ IQ  A P ++ G+  I   ++GSGKT+A+LLP+ 
Sbjct:   372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + +  +     S      P  VI+ PT ELA Q+   C+  SK  +  R + V GG    
Sbjct:   432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     +LDE D +F D  FE  +  
Sbjct:   487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMF-DMGFEPQVMR 545

Query:   445 LISSSPVTAQYLFVTATLP 463
             ++ +     Q +  +AT P
Sbjct:   546 IVDNVRPDRQTVMFSATFP 564

 Score = 38 (18.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query:   197 GEHIVDNDVPAESIDKNISDYNSRSNK-----HEKSGTKIDR 233
             GE +   D   E + + +  +N RS K      +KSG  + +
Sbjct:   222 GEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTK 263


>UNIPROTKB|I3LR20 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
            Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
        Length = 1032

 Score = 263 (97.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 62/199 (31%), Positives = 105/199 (52%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KS+ + G S  ++ SLK+  + +P+ IQ  A P ++ G+  I   ++GSGKT+A+LLP+ 
Sbjct:   372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + +  +     S      P  VI+ PT ELA Q+   C+  SK  +  R + V GG    
Sbjct:   432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     +LDE D +F D  FE  +  
Sbjct:   487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMF-DMGFEPQVMR 545

Query:   445 LISSSPVTAQYLFVTATLP 463
             ++ +     Q +  +AT P
Sbjct:   546 IVDNVRPDRQTVMFSATFP 564

 Score = 38 (18.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query:   197 GEHIVDNDVPAESIDKNISDYNSRSNK-----HEKSGTKIDR 233
             GE +   D   E + + +  +N RS K      +KSG  + +
Sbjct:   222 GEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTK 263


>TAIR|locus:2222617 [details] [associations]
            symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
            PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
            Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
            ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
            EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
            OMA:YLIPGFM Uniprot:F4K6V1
        Length = 712

 Score = 252 (93.8 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 69/252 (27%), Positives = 123/252 (48%)

Query:   288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347
             F  PS IQA ++P  ++ +  +   ++GSGKTL YL+P    L     Q +   +   P 
Sbjct:   249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL-----QRIHNDSRMGPT 303

Query:   348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
             +++L+PT ELA+Q+        K         + GG  +  QL+ ++ GVD+++ATPGR 
Sbjct:   304 ILVLSPTRELATQIQVEALKFGKSS-KISCACLYGGAPKGPQLKEIERGVDIVVATPGRL 362

Query:   408 MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467
               +++   + L  +   +LDE D +  D  FE  ++ +++  P   Q L  TAT P E+ 
Sbjct:   363 NDILEMKRISLHQVSYLVLDEADRML-DMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV- 420

Query:   468 NKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS 527
              K+        +++ P    I   ++E + + S  Q  +        ++   +L+   + 
Sbjct:   421 RKIA-----ADLLVNPAQVNIG-NVDELVANKSITQTIEVLAPMEKHSRLEQILR--SQE 472

Query:   528 PVSKTIVFCNKK 539
             P SK I+FC+ K
Sbjct:   473 PGSKIIIFCSTK 484


>UNIPROTKB|E1BII7 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
            EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
            Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
        Length = 647

 Score = 251 (93.4 bits), Expect = 3.0e-18, P = 3.0e-18
 Identities = 73/267 (27%), Positives = 138/267 (51%)

Query:   275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
             C   ++ ++++  F +P+ IQ+ A+P +++G   I   Q+G+GKTL+YL+P    +  + 
Sbjct:   248 CYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQP 307

Query:   335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
             +  L ++ +G P +++L PT ELA QV + C   S  G+  +S+ + GG  +  Q+++L 
Sbjct:   308 V--LQRARNG-PGMLVLTPTRELALQVDAECSEYSYRGL--KSVCIYGGGDRDGQIKDLS 362

Query:   395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454
             +G D++IATPGR   L     + L ++   +LDE D +  D  FE  +  ++       Q
Sbjct:   363 KGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKML-DMGFEPQIMKILLDVRPDRQ 421

Query:   455 YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
              +  +AT P  +  +L + +     +  P +  +  G  + +   +  Q    T E    
Sbjct:   422 TVMTSATWPYAV-RRLAQSY-----LKEPMI--VYVGTLDLVAVSTVTQNIIVTTED--- 470

Query:   515 NKKSALLQLIEK-SPVSKTIVFCNKKS 540
              K+S +   I+  SP  K I+F ++K+
Sbjct:   471 EKRSHIQAFIDSMSPKDKVIIFVSRKA 497


>UNIPROTKB|P54824 [details] [associations]
            symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
            "Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
            GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
            RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
            GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
        Length = 481

 Score = 248 (92.4 bits), Expect = 3.0e-18, P = 3.0e-18
 Identities = 76/257 (29%), Positives = 128/257 (49%)

Query:   212 KNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKS-- 269
             KN S  NS S +  +S + I +          L+  P D    R K S   D  S K   
Sbjct:    45 KNASTINSGSQQQAQSMSSIIKPGDDWKK--TLKLPPKDL---RIKTS---DVTSTKGNE 96

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F++      ++  +    + +PS IQ  + P  + G+  +   ++G+GK+ AYL+P+++R
Sbjct:    97 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L       L K      + +++ PT ELA QV   C  +SK     + M  TGG   +  
Sbjct:   157 L------DLKKDCI---QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD 207

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
             +  L + V V+IATPGR + LIK+G+ ++ +++  +LDE D L + +DF   ++ +I + 
Sbjct:   208 IMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLS-QDFMQIMEDIIMTL 266

Query:   450 PVTAQYLFVTATLPVEI 466
             P   Q L  +AT P+ +
Sbjct:   267 PKNRQILLYSATFPLSV 283

 Score = 180 (68.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 54/191 (28%), Positives = 96/191 (50%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + +++ PT ELA QV   C  +SK     + M  TGG   +  +  L + V V+IATPGR
Sbjct:   165 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR 224

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + LIK+G+ ++ +++  +LDE D L + +DF   ++ +I + P   Q L  +AT P+ +
Sbjct:   225 ILDLIKKGVAKVDHIQMIVLDEADKLLS-QDFMQIMEDIIMTLPKNRQILLYSATFPLSV 283

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
               K + +      +  P  + I+  +EE  +       +  T       K   L  L  +
Sbjct:   284 -QKFMTLH-----LQKP--YEINL-MEELTLKGVTQYYAYVTER----QKVHCLNTLFSR 330

Query:   527 SPVSKTIVFCN 537
               ++++I+FCN
Sbjct:   331 LQINQSIIFCN 341


>ZFIN|ZDB-GENE-070912-83 [details] [associations]
            symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
            EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
            Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
        Length = 485

 Score = 248 (92.4 bits), Expect = 3.1e-18, P = 3.1e-18
 Identities = 63/215 (29%), Positives = 111/215 (51%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             PK     ++D        F++      ++  +    + +PS IQ  + P  + G+  +  
Sbjct:    81 PKDLRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 140

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GK+ AYL+P+++R+       L K +  +   V++ PT ELA QV   C  +SK 
Sbjct:   141 AKNGTGKSGAYLIPLLERI------DLKKDSIQA--AVVIVPTRELALQVSQICIQVSKH 192

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
                 + M  TGG   +  +  L E V V+IATPGR + LIK+G+ ++  ++  +LDE D 
Sbjct:   193 MGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADK 252

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + +DF   ++ ++SS     Q L  +AT P+ +
Sbjct:   253 LLS-QDFVQMMEEILSSLSKQRQILLYSATFPLSV 286

 Score = 179 (68.1 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 57/189 (30%), Positives = 94/189 (49%)

Query:   349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
             V++ PT ELA QV   C  +SK     + M  TGG   +  +  L E V V+IATPGR +
Sbjct:   170 VVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRIL 229

Query:   409 FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468
              LIK+G+ ++  ++  +LDE D L + +DF   ++ ++SS     Q L  +AT P+    
Sbjct:   230 DLIKKGVAKVGQVQMIVLDEADKLLS-QDFVQMMEEILSSLSKQRQILLYSATFPLS--- 285

Query:   469 KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSP 528
               V+ F +  +   P  + I+  +EE  +       +  T       K   L  L  +  
Sbjct:   286 --VQKFMNSHL-QKP--YEINL-MEELTLKGVTQYYAYVTER----QKVHCLNTLFSRLQ 335

Query:   529 VSKTIVFCN 537
             ++++I+FCN
Sbjct:   336 INQSIIFCN 344


>TAIR|locus:2116920 [details] [associations]
            symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
            "protein import into nucleus" evidence=RCA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
            KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
            EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
            RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
            SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
            EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
            KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
            InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
            Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
        Length = 626

 Score = 254 (94.5 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 81/281 (28%), Positives = 141/281 (50%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             KSF+ELG    +I +L ++   +P+ IQ  A P ++EGK  +   ++GSGKTLAYLLP++
Sbjct:    46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQ 386
             Q+L   +   +SK    +P   IL P+ EL  QV +   SL + C V  +++ +T     
Sbjct:   106 QKLFSAD--SVSKKKL-APSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSM-S 161

Query:   387 KTQLENLQEGV-DVLIATPGRFMFLIKEGILQLI----NLRCAILDEVDILFNDEDFEVA 441
              + + N   G+ ++L++TP         G+L+      +L   +LDE D+L +   +E  
Sbjct:   162 ASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLS-YGYEDN 220

Query:   442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM-----GPGMHRISPGLEEFL 496
             L+S+ S  P   Q L ++AT   ++  KL ++     +V+           +   +++F 
Sbjct:   221 LRSVTSIIPRRCQCLLMSATTSSDV-EKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFW 279

Query:   497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
             + CS     DK      L K    L++++K    K ++F N
Sbjct:   280 ISCSAQ---DKLLHILALLK----LEVVQK----KILIFIN 309

 Score = 40 (19.1 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query:   183 LSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTK 230
             + KT   L+   ++   +VD    AE +++  +D      + E+   K
Sbjct:     1 MGKT--KLKPVEDVNSEVVDEVEKAEEVEEQRNDREQEEEQKEEEAPK 46


>UNIPROTKB|E1BGI6 [details] [associations]
            symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0003714 "transcription corepressor activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
            IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
        Length = 877

 Score = 253 (94.1 bits), Expect = 3.1e-18, P = 3.1e-18
 Identities = 61/194 (31%), Positives = 105/194 (54%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ +G S  + + + ++ +  P+ IQ    P +++GK  +   ++GSGKT  +L+P+ +R
Sbjct:    98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L+    Q      +G+ R +IL+PT ELA Q +   + L K     ++ ++ GG + + Q
Sbjct:   158 LKTHSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLKTALILGGDKMEDQ 209

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                L E  D++IATPGR + +  E  L+L ++   + DE D LF +  F   LQ +I   
Sbjct:   210 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIGRL 268

Query:   450 PVTAQYLFVTATLP 463
             P   Q +  +ATLP
Sbjct:   269 PGGHQTVLFSATLP 282


>RGD|1311124 [details] [associations]
            symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
            Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
        Length = 480

 Score = 247 (92.0 bits), Expect = 3.9e-18, P = 3.9e-18
 Identities = 62/196 (31%), Positives = 100/196 (51%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F EL  S +++E  ++    +P+ +Q    P ++EG+ C+   ++GSGKT A++LP++Q+
Sbjct:     4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L  E+  G+          ++L PT ELA Q+    R L K  +  +  ++ GG    TQ
Sbjct:    64 L-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVTQ 113

Query:   390 LENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSLI 446
                L     V+IATPGR    L       +  +R  +LDE D L      DF   L++++
Sbjct:   114 ALELSRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETIL 173

Query:   447 SSSPVTAQYLFVTATL 462
             S+ P   Q L  +ATL
Sbjct:   174 SAVPARRQTLLFSATL 189


>WB|WBGene00022378 [details] [associations]
            symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
            OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
            GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
            NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
            SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
            WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
            Uniprot:Q688Z4
        Length = 871

 Score = 252 (93.8 bits), Expect = 4.0e-18, P = 4.0e-18
 Identities = 56/194 (28%), Positives = 108/194 (55%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             ++++G    + ++++++ F +P+ IQ    P +++GK  +   ++GSGKT A+++P++Q+
Sbjct:    26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L++ +  G+        R ++++PT ELA Q     + L +     R   + GG + + Q
Sbjct:    86 LKRRDTTGI--------RALMVSPTRELALQTFKVVKELGRF-TGLRCACLVGGDQIEEQ 136

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                + E  D+L+ATPGR + +I E  L+L  ++  + DE D LF +  F+  L   +   
Sbjct:   137 FSTIHENPDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLF-EMGFQDQLTETLKRI 195

Query:   450 PVTAQYLFVTATLP 463
             P + Q L  +ATLP
Sbjct:   196 PESRQTLLFSATLP 209


>SGD|S000003570 [details] [associations]
            symbol:HCA4 "DEAD box RNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
            [GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA;IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
            GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
            PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
            DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
            PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
            KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
            NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
            Uniprot:P20448
        Length = 770

 Score = 251 (93.4 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 74/230 (32%), Positives = 122/230 (53%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K FK+L  SD  ++ L+  +F++ ++IQA + P  ++G   + A ++GSGKTLA+L+PVI
Sbjct:    41 KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query:   328 QRLRQE---ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTG 382
             ++L +E   E  GL          +I++PT ELA Q+      L+K G    F + +V G
Sbjct:   101 EKLYREKWTEFDGLG--------ALIISPTRELAMQIYE---VLTKIGSHTSFSAGLVIG 149

Query:   383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFNDEDFEVA 441
             G   K +LE +   +++LI TPGR +  + + + L   NL+  +LDE D    D  F+  
Sbjct:   150 GKDVKFELERISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCL-DMGFKKT 207

Query:   442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG 491
             L +++S+   + Q L  +AT    + +       D K V   G H +  G
Sbjct:   208 LDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTV---GTHDVMDG 254


>UNIPROTKB|I3LV06 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
            Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
            Uniprot:I3LV06
        Length = 607

 Score = 249 (92.7 bits), Expect = 4.3e-18, P = 4.3e-18
 Identities = 79/287 (27%), Positives = 138/287 (48%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F   G  + +  +LK   +  P+ IQ    P  + G+  + +  +GSGKT A+LLPVI R
Sbjct:   193 FGHCGFPETLNFNLKTAGYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITR 252

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQKT 388
                +         S +P  ++L PT ELA Q+    + L   G+P  R+ ++ GG     
Sbjct:   253 ALVQ---------SKAPSALVLTPTRELAIQIERQAKELMG-GLPRMRTALLVGGLPAPP 302

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             QL  L++ V V+IATPGR + ++K+  + L N++  ++DE D +     F+  +  ++ +
Sbjct:   303 QLHRLRQRVQVIIATPGRLLDIMKQSSVDLGNIKIVVVDEADTMLK-MGFQEQVLDVLEN 361

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG------PGMHRI-----SPGLEEFL 496
              P   Q + V+AT+P  I      +  D  +V+ G      P + +I      P  ++ L
Sbjct:   362 VPQDCQTILVSATIPTRIEQLASRLLHDPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKL 421

Query:   497 VDCSGDQESDKTPETAFLNKK---SALLQLIEKSPVSKTIVFCNKKS 540
              +   D++  K P   F++ K     L + +EK    K+    ++KS
Sbjct:   422 FEILNDKKLFKPPVLVFVDCKLGADLLSEAVEKITGLKSTSMHSEKS 468


>TAIR|locus:2130918 [details] [associations]
            symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
            OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
            PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
            ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
            PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
            KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
            PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
            GermOnline:AT4G16630 Uniprot:Q9ZRZ8
        Length = 789

 Score = 251 (93.4 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 82/298 (27%), Positives = 144/298 (48%)

Query:   245 QYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE 304
             +Y+P D   +    + DG  F   +F EL  S  ++ + +   + +P+ IQA   P  + 
Sbjct:   144 EYKPEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALT 203

Query:   305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364
             G+    +  +GSGKT A+ LP ++RL     +  +       RV+IL PT ELA Q+ S 
Sbjct:   204 GRDLCASAITGSGKTAAFALPTLERLLFRPKRVFAT------RVLILTPTRELAVQIHSM 257

Query:   365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRC 423
              ++L++     +  ++ GG   + Q   L+   D+++ATPGR +  ++  + + L +L  
Sbjct:   258 IQNLAQF-TDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 316

Query:   424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVM 481
              ILDE D L     F   +  L+   P   Q +  +AT+  E+  +LV++  +   ++  
Sbjct:   317 LILDEADRLLQT-GFATEITELVRLCPKRRQTMLFSATMTEEV-KELVKLSLNKPLRLSA 374

Query:   482 GPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
              P   R  PGL E +V     +E+         N+++ LL L  ++  SK I+F   K
Sbjct:   375 DPSARR-PPGLTEEVVRIRRTREA---------NQEAVLLSLCTRTFKSKVIIFSGTK 422


>TIGR_CMR|SO_1383 [details] [associations]
            symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
            ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
            PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
        Length = 433

 Score = 245 (91.3 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 57/187 (30%), Positives = 103/187 (55%)

Query:   275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
             C + ++ ++    + + + IQ  A P +  G+  + + Q+G+GKT A+ LP++Q++ +  
Sbjct:     9 CPE-ILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENP 67

Query:   335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
              + L  +T    RV+IL PT ELA+QV  N  + SK  + F  + + GG + +TQ + L+
Sbjct:    68 SETLKSNT----RVLILTPTRELAAQVAENVEAYSKY-LNFSVLTIYGGVKVETQAQKLK 122

Query:   395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454
              G D+++ATPGR +  +    L L ++   +LDE D +  D  F   +Q ++ +     Q
Sbjct:   123 RGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRML-DMGFSADIQKILQAVNKKRQ 181

Query:   455 YLFVTAT 461
              L  +AT
Sbjct:   182 NLLFSAT 188


>UNIPROTKB|F1P0H1 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
            IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
            Uniprot:F1P0H1
        Length = 703

 Score = 250 (93.1 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 65/216 (30%), Positives = 107/216 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
             SF   G  + ++  +++  + +P+ IQ    P  + G+  I   ++GSGKT A++ P+ I
Sbjct:   249 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 308

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               + Q+EL+         P  VI+ PT EL  Q+ S C+   K     RS+ V GG    
Sbjct:   309 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHSECKRFGKA-YNLRSVAVYGGGSMW 362

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q + LQEG ++++ TPGR +  +K+    L  +   + DE D +F D  FE  ++S+ S
Sbjct:   363 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMF-DMGFEYQVRSIAS 421

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
                   Q L  +AT   +I     ++  D  +VV G
Sbjct:   422 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 457


>TAIR|locus:2173517 [details] [associations]
            symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
            "pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
            IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
            ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
            PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
            KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
            PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
            GermOnline:AT5G60990 Uniprot:Q8GY84
        Length = 456

 Score = 245 (91.3 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 65/203 (32%), Positives = 105/203 (51%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K+F ELG  + ++++ +R  +  PS+IQA A P  +EGK  I   Q+GSGKT A+ +P++
Sbjct:     9 KTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68

Query:   328 QRLRQEELQGL-SKSTSGSPR--VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
             Q L +        K     P     +L+PT ELA Q+     +L    +  R  V+ GG 
Sbjct:    69 QALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG-ADISLRCAVLVGGI 127

Query:   385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFNDEDFEVALQ 443
              +  Q   L +   V++ATPGR    + +     L +L+  +LDE D L N EDFE +L 
Sbjct:   128 DRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLN-EDFEKSLN 186

Query:   444 SLISSSPVTAQYLFVTATLPVEI 466
              ++   P+  +    +AT+  ++
Sbjct:   187 QILEEIPLERKTFLFSATMTKKV 209


>CGD|CAL0003050 [details] [associations]
            symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
            "ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
            "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
            [GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
            InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
            RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
            GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
            Uniprot:Q5AK59
        Length = 565

 Score = 247 (92.0 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 91/357 (25%), Positives = 168/357 (47%)

Query:   156 AQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHI-VDNDVPAESIDKNI 214
             A+  K   +K+ +   K V+ + ++     +   +E+  ++ E +  D D  A  +  +I
Sbjct:     2 AKTTKVKGNKKKSDTSKVVSKVSRKRSHEDSESEVEDNEKVVEELDADFDEVAGLLGDDI 61

Query:   215 SDYNSRS-NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKEL 273
              D  S+S +K EK   K D       +   +  E  D        S++   F    F   
Sbjct:    62 EDPESKSQSKKEKQKAK-DEAKLEQLTKPQVSNEVPD--NDNDDDSSEDVLFENADF--- 115

Query:   274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
               S+  ++++K   F + +++QA   PP++ G+  + A ++GSGKTLA+L+P I+ L   
Sbjct:   116 --SEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL 173

Query:   334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGFRQKTQL 390
             ++    K  +G+  V+I+ PT ELA Q+    R L +    F S    +V GG  ++ + 
Sbjct:   174 KI----KPRNGTA-VIIITPTRELALQIFGVARELMQ----FHSQTCGIVIGGADRRQEA 224

Query:   391 ENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450
               L +GV++L+ATPGR +  +K       NL+  ++DE D +  +  FE  ++ +I   P
Sbjct:   225 TKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRIL-EIGFEDEMKQIIKVLP 283

Query:   451 -VTAQYLFVTATLPVEIYNKL-VEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
                 Q +  +AT   ++ +   + + P    +       +S   GLE+  V C  D+
Sbjct:   284 NENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDK 340


>UNIPROTKB|Q5AK59 [details] [associations]
            symbol:HAS1 "ATP-dependent RNA helicase HAS1"
            species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
            subunit biogenesis" evidence=IGI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
            GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
            EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
            STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
            KEGG:cal:CaO19.3962 Uniprot:Q5AK59
        Length = 565

 Score = 247 (92.0 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 91/357 (25%), Positives = 168/357 (47%)

Query:   156 AQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHI-VDNDVPAESIDKNI 214
             A+  K   +K+ +   K V+ + ++     +   +E+  ++ E +  D D  A  +  +I
Sbjct:     2 AKTTKVKGNKKKSDTSKVVSKVSRKRSHEDSESEVEDNEKVVEELDADFDEVAGLLGDDI 61

Query:   215 SDYNSRS-NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKEL 273
              D  S+S +K EK   K D       +   +  E  D        S++   F    F   
Sbjct:    62 EDPESKSQSKKEKQKAK-DEAKLEQLTKPQVSNEVPD--NDNDDDSSEDVLFENADF--- 115

Query:   274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
               S+  ++++K   F + +++QA   PP++ G+  + A ++GSGKTLA+L+P I+ L   
Sbjct:   116 --SEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL 173

Query:   334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGFRQKTQL 390
             ++    K  +G+  V+I+ PT ELA Q+    R L +    F S    +V GG  ++ + 
Sbjct:   174 KI----KPRNGTA-VIIITPTRELALQIFGVARELMQ----FHSQTCGIVIGGADRRQEA 224

Query:   391 ENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450
               L +GV++L+ATPGR +  +K       NL+  ++DE D +  +  FE  ++ +I   P
Sbjct:   225 TKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRIL-EIGFEDEMKQIIKVLP 283

Query:   451 -VTAQYLFVTATLPVEIYNKL-VEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
                 Q +  +AT   ++ +   + + P    +       +S   GLE+  V C  D+
Sbjct:   284 NENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDK 340


>UNIPROTKB|Q9KNA4 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
            GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
            PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
            DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
            Uniprot:Q9KNA4
        Length = 452

 Score = 244 (91.0 bits), Expect = 6.9e-18, P = 6.9e-18
 Identities = 68/222 (30%), Positives = 118/222 (53%)

Query:   266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
             S   FK+LG  + ++++L   NF + ++IQ  A P  + G+  + + ++GSGKTLA++LP
Sbjct:     3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62

Query:   326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
             ++ +     L+  + S    PR +IL PT ELA QV    RS+   G+ + + ++TGG  
Sbjct:    63 MLHK----SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSMLG-GLSYTATLITGGEN 116

Query:   386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
                Q++ L  G   ++ATPGR    +    L L  L   +LDE D +  D  F   L+ +
Sbjct:   117 FNDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRML-DLGFAKELRRI 175

Query:   446 ISSSPVTA-QYLFVTATLP-VEIYNKLVEVFPDCK-VVMGPG 484
              +++     Q L  +ATL   ++ +  +E+  + K + +G G
Sbjct:   176 HNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVG 217


>TIGR_CMR|VC_A0061 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
            ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
            ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
            KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
        Length = 452

 Score = 244 (91.0 bits), Expect = 6.9e-18, P = 6.9e-18
 Identities = 68/222 (30%), Positives = 118/222 (53%)

Query:   266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
             S   FK+LG  + ++++L   NF + ++IQ  A P  + G+  + + ++GSGKTLA++LP
Sbjct:     3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62

Query:   326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
             ++ +     L+  + S    PR +IL PT ELA QV    RS+   G+ + + ++TGG  
Sbjct:    63 MLHK----SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSMLG-GLSYTATLITGGEN 116

Query:   386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
                Q++ L  G   ++ATPGR    +    L L  L   +LDE D +  D  F   L+ +
Sbjct:   117 FNDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRML-DLGFAKELRRI 175

Query:   446 ISSSPVTA-QYLFVTATLP-VEIYNKLVEVFPDCK-VVMGPG 484
              +++     Q L  +ATL   ++ +  +E+  + K + +G G
Sbjct:   176 HNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVG 217


>ZFIN|ZDB-GENE-080204-77 [details] [associations]
            symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
            EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
            Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
        Length = 719

 Score = 252 (93.8 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
 Identities = 62/185 (33%), Positives = 101/185 (54%)

Query:   279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
             ++E++ R  F +P+ IQ+ A+P V+ G   I   Q+G+GKTLAYLLP    +   + Q +
Sbjct:   289 IMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHM---DGQPM 345

Query:   339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
              +     P +++L PT ELA Q+ + C   S  G  F+S+ + GG  +  Q++ +  GVD
Sbjct:   346 PRDKRNGPGMLVLTPTRELALQIEAECNKYSYKG--FKSICIYGGGDRNAQIKVVTSGVD 403

Query:   399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
             ++IATPGR   L    ++ L ++   +LDE D +  D  FE  +  +I       Q +  
Sbjct:   404 IVIATPGRLNDLQMNELINLRSITYLVLDEADRML-DMGFEPQIMKIILDIRPDRQTVMT 462

Query:   459 TATLP 463
             +AT P
Sbjct:   463 SATWP 467

 Score = 41 (19.5 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query:     8 VMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVLPLLNPN 47
             V  A AAA    P+    LR N +  + M    LP+L  N
Sbjct:   194 VKAAAAAAPAPTPIDWTSLRENRDKYEAMKWQDLPVLKKN 233


>TAIR|locus:2098886 [details] [associations]
            symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
            process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
            EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
            PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
            UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
            PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
            EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
            GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
            PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
            GermOnline:AT3G61240 Uniprot:Q9M2E0
        Length = 498

 Score = 245 (91.3 bits), Expect = 7.2e-18, P = 7.2e-18
 Identities = 69/254 (27%), Positives = 125/254 (49%)

Query:   213 NISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKE 272
             N ++   ++ + E S     + W++      L+  P   P  R++ +AD        F++
Sbjct:    78 NANEVVQQTTQPEASSDANGQDWKA-----TLRLPP---PDTRYQ-TADVTATKGNEFED 128

Query:   273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ 332
                   +++ +  + F +PS IQ  + P  + G   +   ++G+GKT A+ +PV++++  
Sbjct:   129 YFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI-- 186

Query:   333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN 392
                       +   + +IL PT ELA Q    C+ LSK  +  + MV TGG   +  +  
Sbjct:   187 -------DPNNNVIQAMILVPTRELALQTSQVCKELSKY-LNIQVMVTTGGTSLRDDIMR 238

Query:   393 LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT 452
             L + V +L+ TPGR + L K+G+  L +    ++DE D L + E F+ +L+ LI   P  
Sbjct:   239 LHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFLPQN 297

Query:   453 AQYLFVTATLPVEI 466
              Q+L  +AT PV +
Sbjct:   298 RQFLMFSATFPVTV 311

 Score = 188 (71.2 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 61/196 (31%), Positives = 97/196 (49%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + +IL PT ELA Q    C+ LSK  +  + MV TGG   +  +  L + V +L+ TPGR
Sbjct:   194 QAMILVPTRELALQTSQVCKELSKY-LNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGR 252

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + L K+G+  L +    ++DE D L + E F+ +L+ LI   P   Q+L  +AT PV  
Sbjct:   253 ILDLTKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFLPQNRQFLMFSATFPVT- 310

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES--DKTPETAFLNKKS---ALL 521
                 V+ F D         H   P    ++++   DQ +    T   AF+ ++     L 
Sbjct:   311 ----VKAFKD--------RHLRKP----YVINLM-DQLTLMGVTQYYAFVEERQKVHCLN 353

Query:   522 QLIEKSPVSKTIVFCN 537
              L  K  ++++I+FCN
Sbjct:   354 TLFSKLQINQSIIFCN 369


>UNIPROTKB|Q5F485 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
            localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
            UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
            GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
            HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
            NextBio:20822943 Uniprot:Q5F485
        Length = 944

 Score = 250 (93.1 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 65/216 (30%), Positives = 107/216 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
             SF   G  + ++  +++  + +P+ IQ    P  + G+  I   ++GSGKT A++ P+ I
Sbjct:   254 SFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               + Q+EL+         P  VI+ PT EL  Q+ S C+   K     RS+ V GG    
Sbjct:   314 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHSECKRFGKA-YNLRSVAVYGGGSMW 367

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q + LQEG ++++ TPGR +  +K+    L  +   + DE D +F D  FE  ++S+ S
Sbjct:   368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMF-DMGFEYQVRSIAS 426

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
                   Q L  +AT   +I     ++  D  +VV G
Sbjct:   427 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 462


>POMBASE|SPAC823.08c [details] [associations]
            symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
            SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
            KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
        Length = 465

 Score = 244 (91.0 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 75/230 (32%), Positives = 115/230 (50%)

Query:   243 NLQYEPTDCPKQRHKYSADGDFFSR---KSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
             N + E ++   ++   + +GD  +    K+FKELG  D + E+ ++  F  P+ IQ  A 
Sbjct:    18 NKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAI 77

Query:   300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR-VVILAPTAELA 358
             P V+  +  I   Q+GSGKT A+ LPVIQ L              SP   V+LAPT ELA
Sbjct:    78 PVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP----------SPFFAVVLAPTRELA 127

Query:   359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGIL 416
              Q+     ++    +  RS+V+ GG    TQ   L +   VL+ TPGR M  ++  +G  
Sbjct:   128 YQISEQFEAIGG-SIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGF- 185

Query:   417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              L NL+  I+DE D L  D DF   +  ++   P   + L  +AT+  ++
Sbjct:   186 SLKNLKYLIMDEADRLL-DMDFGPIIDKILKIIPHERRTLLFSATMTSKV 234


>UNIPROTKB|F1NJ40 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AADN02056764
            Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
        Length = 946

 Score = 250 (93.1 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 65/216 (30%), Positives = 107/216 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
             SF   G  + ++  +++  + +P+ IQ    P  + G+  I   ++GSGKT A++ P+ I
Sbjct:   256 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 315

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               + Q+EL+         P  VI+ PT EL  Q+ S C+   K     RS+ V GG    
Sbjct:   316 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHSECKRFGKA-YNLRSVAVYGGGSMW 369

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q + LQEG ++++ TPGR +  +K+    L  +   + DE D +F D  FE  ++S+ S
Sbjct:   370 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMF-DMGFEYQVRSIAS 428

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
                   Q L  +AT   +I     ++  D  +VV G
Sbjct:   429 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 464


>UNIPROTKB|Q485I3 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 244 (91.0 bits), Expect = 7.8e-18, P = 7.8e-18
 Identities = 75/275 (27%), Positives = 135/275 (49%)

Query:   266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
             S  +F  L     ++++L    + + + IQA   P +++GK  I   ++GSGKT A+ L 
Sbjct:     8 SSLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLA 67

Query:   326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGF 384
             ++ +L  ++ +  S         +++ PT ELA QV    R L++ G+   + + + GG 
Sbjct:    68 LLNKLEVKKFRIQS---------MVICPTRELADQVAKELRKLAR-GIHNIKILTLCGGT 117

Query:   385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
                 Q+ +L+ G  V++ TPGR    + +G LQL NL   +LDE D +  +  F+ AL +
Sbjct:   118 PFGPQIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRML-EMGFQAALDN 176

Query:   445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
             ++  +P+  Q L  +AT P +I +    +  D      P M +I+   ++  +     Q+
Sbjct:   177 IVGRTPLDRQTLLFSATFPDQIKSISESIMTD------PVMVKIASSEDQSTIS----QK 226

Query:   505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               K       ++  AL  L+  + V  T +FCN K
Sbjct:   227 FFKVGNDD--DRLDALRLLLLGNQVESTAIFCNTK 259


>TIGR_CMR|CPS_1540 [details] [associations]
            symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 244 (91.0 bits), Expect = 7.8e-18, P = 7.8e-18
 Identities = 75/275 (27%), Positives = 135/275 (49%)

Query:   266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
             S  +F  L     ++++L    + + + IQA   P +++GK  I   ++GSGKT A+ L 
Sbjct:     8 SSLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLA 67

Query:   326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGF 384
             ++ +L  ++ +  S         +++ PT ELA QV    R L++ G+   + + + GG 
Sbjct:    68 LLNKLEVKKFRIQS---------MVICPTRELADQVAKELRKLAR-GIHNIKILTLCGGT 117

Query:   385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
                 Q+ +L+ G  V++ TPGR    + +G LQL NL   +LDE D +  +  F+ AL +
Sbjct:   118 PFGPQIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRML-EMGFQAALDN 176

Query:   445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
             ++  +P+  Q L  +AT P +I +    +  D      P M +I+   ++  +     Q+
Sbjct:   177 IVGRTPLDRQTLLFSATFPDQIKSISESIMTD------PVMVKIASSEDQSTIS----QK 226

Query:   505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
               K       ++  AL  L+  + V  T +FCN K
Sbjct:   227 FFKVGNDD--DRLDALRLLLLGNQVESTAIFCNTK 259


>ZFIN|ZDB-GENE-050208-665 [details] [associations]
            symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
            IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
            Uniprot:F1R8P9
        Length = 584

 Score = 252 (93.8 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
 Identities = 71/250 (28%), Positives = 120/250 (48%)

Query:   217 YNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCS 276
             +N+++       TK    ++    I  L  E  +  K      + G    R   +   C 
Sbjct:   118 FNNKNTPESSENTK-SYSYKQDAFISELTEEQIERVKAELGIVSVGTEVCRPVIEFQHCR 176

Query:   277 -DYMIE-SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
                ++E +LK   +  P+ +Q    P  + G+  I    +GSGKT+A+LLPV+ R  Q E
Sbjct:   177 FPTVLERNLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSE 236

Query:   335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENL 393
                 S S S  P  +IL PT ELA Q+    + L + G+P  R+ ++ GG     QL  L
Sbjct:   237 ----SASPS-CPACLILTPTRELAIQIEEQAKELMR-GLPNMRTALLVGGMPLPPQLHRL 290

Query:   394 QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA 453
             +  + ++I TPGR + ++K+  +QL ++R  ++DE D +     F+  +  ++   P   
Sbjct:   291 KHNIKIVIGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLK-MGFQQQVLDILEQVPEDH 349

Query:   454 QYLFVTATLP 463
             Q L  +AT+P
Sbjct:   350 QTLLTSATIP 359

 Score = 37 (18.1 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query:   465 EIYNKLVEVFPDCKV 479
             ++Y   V VF DCK+
Sbjct:   412 KLYQPPVVVFVDCKL 426


>FB|FBgn0052344 [details] [associations]
            symbol:CG32344 species:7227 "Drosophila melanogaster"
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
            GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
            GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
            RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
            STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
            KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
            InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
            NextBio:847633 Uniprot:Q8SY39
        Length = 827

 Score = 249 (92.7 bits), Expect = 7.9e-18, P = 7.9e-18
 Identities = 60/194 (30%), Positives = 105/194 (54%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+ +G    +I+ + ++ +  P+ IQ    P ++EG+  +   ++GSGKT  +L+P+ ++
Sbjct:    41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
             L++ E       T G+ R +IL+PT ELA Q     + L +  +  +S++V GG    +Q
Sbjct:   101 LQRRE------PTKGA-RALILSPTRELAVQTYKFIKELGRF-MELKSILVLGGDSMDSQ 152

Query:   390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
                +    DV++ATPGRF+ L  E  L+L ++   + DE D LF +  F   L   +   
Sbjct:   153 FSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLF-EMGFGEQLNETLHRL 211

Query:   450 PVTAQYLFVTATLP 463
             P + Q +  +ATLP
Sbjct:   212 PSSRQTVMFSATLP 225


>TAIR|locus:2074899 [details] [associations]
            symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
            RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
            SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
            GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
            GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
            PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
            GermOnline:AT3G09620 Uniprot:Q9SF41
        Length = 989

 Score = 250 (93.1 bits), Expect = 8.2e-18, P = 8.2e-18
 Identities = 62/212 (29%), Positives = 113/212 (53%)

Query:   272 ELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331
             + G +  ++++LK+ N+ +P  IQA A P ++ G+ CI   ++GSGKTL ++LP+++ ++
Sbjct:   400 QTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIK 459

Query:   332 QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE 391
              +            P  +++APT EL  Q+ S+ R  SK  +    + V GG     Q+ 
Sbjct:   460 DQP----PVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKA-LGIICVPVYGGSGVAQQIS 514

Query:   392 NLQEGVDVLIATPGRFMFLIKEGILQLINLRCA---ILDEVDILFNDEDFEVALQSLISS 448
              L+ G ++++ TPGR + ++     ++ NLR     ++DE D +F D  FE  +  ++ +
Sbjct:   515 ELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQN 573

Query:   449 SPVTAQYLFVTATLP--VE-----IYNKLVEV 473
                  Q +  +AT P  VE     + NK VE+
Sbjct:   574 IRPDRQTVLFSATFPRQVETLARKVLNKPVEI 605


>UNIPROTKB|Q8EHT1 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 243 (90.6 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 63/200 (31%), Positives = 107/200 (53%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F ELG +  + ++L  +    P+++Q +A P ++ G+  +   Q+GSGKT A+ LP++Q
Sbjct:    18 TFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQ 76

Query:   329 RLRQE-ELQGLSKST-SGSPRVVILAPTAELASQVLSNCRSLSK---CGVPFRSMVVTGG 383
              L Q+  +Q  +KS  +  P  ++L PT ELA QV     +L+       P    ++ GG
Sbjct:    77 ILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGG 136

Query:   384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
                + QL +L     +++ATPGR + L  +  + L  ++  +LDE D L  +  F   +Q
Sbjct:   137 VALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLL-EMGFWPDMQ 195

Query:   444 SLISSSPVTAQYLFVTATLP 463
              L++  P   Q L  +ATLP
Sbjct:   196 KLMAMMPKRKQTLLFSATLP 215


>TIGR_CMR|SO_1136 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 243 (90.6 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 63/200 (31%), Positives = 107/200 (53%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F ELG +  + ++L  +    P+++Q +A P ++ G+  +   Q+GSGKT A+ LP++Q
Sbjct:    18 TFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQ 76

Query:   329 RLRQE-ELQGLSKST-SGSPRVVILAPTAELASQVLSNCRSLSK---CGVPFRSMVVTGG 383
              L Q+  +Q  +KS  +  P  ++L PT ELA QV     +L+       P    ++ GG
Sbjct:    77 ILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGG 136

Query:   384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
                + QL +L     +++ATPGR + L  +  + L  ++  +LDE D L  +  F   +Q
Sbjct:   137 VALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLL-EMGFWPDMQ 195

Query:   444 SLISSSPVTAQYLFVTATLP 463
              L++  P   Q L  +ATLP
Sbjct:   196 KLMAMMPKRKQTLLFSATLP 215


>UNIPROTKB|Q5ZKB9 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
            eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
            OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
            EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
            ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
            HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
            ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
        Length = 483

 Score = 244 (91.0 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 62/215 (28%), Positives = 111/215 (51%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             PK     ++D        F++      ++  +    + +PS IQ  + P  + G+  +  
Sbjct:    80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GK+ AYL+P+++RL       L K      + +++ PT ELA QV   C  +SK 
Sbjct:   140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
                 + M  TGG   +  +  L + V V+IATPGR + LIK+G+ ++ +++  +LDE D 
Sbjct:   191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADK 250

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + +DF   ++ +I + P   Q L  +AT P+ +
Sbjct:   251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284

 Score = 177 (67.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 55/191 (28%), Positives = 96/191 (50%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + +++ PT ELA QV   C  +SK     + M  TGG   +  +  L + V V+IATPGR
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR 225

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + LIK+G+ ++ +++  +LDE D L + +DF   ++ +I + P   Q L  +AT P+  
Sbjct:   226 ILDLIKKGVAKVEHVQMIVLDEADKLLS-QDFVQIMEDIILTLPKNRQILLYSATFPLS- 283

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
                 V+ F +  +   P  + I+  +EE  +       +  T       K   L  L  +
Sbjct:   284 ----VQKFMNSHL-QKP--YEINL-MEELTLKGVTQYYAYVTER----QKVHCLNTLFSR 331

Query:   527 SPVSKTIVFCN 537
               ++++I+FCN
Sbjct:   332 LQINQSIIFCN 342


>UNIPROTKB|E1BDM8 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
            EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
            UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
            GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
        Length = 483

 Score = 244 (91.0 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 62/215 (28%), Positives = 111/215 (51%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             PK     ++D        F++      ++  +    + +PS IQ  + P  + G+  +  
Sbjct:    80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GK+ AYL+P+++RL       L K      + +++ PT ELA QV   C  +SK 
Sbjct:   140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
                 + M  TGG   +  +  L + V V+IATPGR + LIK+G+ ++ +++  +LDE D 
Sbjct:   191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + +DF   ++ +I + P   Q L  +AT P+ +
Sbjct:   251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284

 Score = 177 (67.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 55/191 (28%), Positives = 96/191 (50%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + +++ PT ELA QV   C  +SK     + M  TGG   +  +  L + V V+IATPGR
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR 225

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + LIK+G+ ++ +++  +LDE D L + +DF   ++ +I + P   Q L  +AT P+  
Sbjct:   226 ILDLIKKGVAKVDHVQMIVLDEADKLLS-QDFVQIMEDIILTLPKNRQILLYSATFPLS- 283

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
                 V+ F +  +   P  + I+  +EE  +       +  T       K   L  L  +
Sbjct:   284 ----VQKFMNSHL-QKP--YEINL-MEELTLKGVTQYYAYVTER----QKVHCLNTLFSR 331

Query:   527 SPVSKTIVFCN 537
               ++++I+FCN
Sbjct:   332 LQINQSIIFCN 342


>UNIPROTKB|E2RR01 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
            RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
            KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
        Length = 483

 Score = 244 (91.0 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 62/215 (28%), Positives = 111/215 (51%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             PK     ++D        F++      ++  +    + +PS IQ  + P  + G+  +  
Sbjct:    80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GK+ AYL+P+++RL       L K      + +++ PT ELA QV   C  +SK 
Sbjct:   140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
                 + M  TGG   +  +  L + V V+IATPGR + LIK+G+ ++ +++  +LDE D 
Sbjct:   191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + +DF   ++ +I + P   Q L  +AT P+ +
Sbjct:   251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284

 Score = 177 (67.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 55/191 (28%), Positives = 96/191 (50%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + +++ PT ELA QV   C  +SK     + M  TGG   +  +  L + V V+IATPGR
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR 225

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + LIK+G+ ++ +++  +LDE D L + +DF   ++ +I + P   Q L  +AT P+  
Sbjct:   226 ILDLIKKGVAKVDHVQMIVLDEADKLLS-QDFVQIMEDIILTLPKNRQILLYSATFPLS- 283

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
                 V+ F +  +   P  + I+  +EE  +       +  T       K   L  L  +
Sbjct:   284 ----VQKFMNSHL-QKP--YEINL-MEELTLKGVTQYYAYVTER----QKVHCLNTLFSR 331

Query:   527 SPVSKTIVFCN 537
               ++++I+FCN
Sbjct:   332 LQINQSIIFCN 342


>UNIPROTKB|P26196 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
            [GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
            "RNA-induced silencing complex" evidence=IDA] [GO:0033962
            "cytoplasmic mRNA processing body assembly" evidence=IDA]
            [GO:0000288 "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
            nuclear-transcribed mRNA catabolic process involved in
            deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
            EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
            RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
            PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
            ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
            STRING:P26196 PhosphoSite:P26196 DMDM:116241327
            DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
            PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
            Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
            KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
            HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
            neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
            PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
            GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
            CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
            Uniprot:P26196
        Length = 483

 Score = 244 (91.0 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 62/215 (28%), Positives = 111/215 (51%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             PK     ++D        F++      ++  +    + +PS IQ  + P  + G+  +  
Sbjct:    80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GK+ AYL+P+++RL       L K      + +++ PT ELA QV   C  +SK 
Sbjct:   140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
                 + M  TGG   +  +  L + V V+IATPGR + LIK+G+ ++ +++  +LDE D 
Sbjct:   191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + +DF   ++ +I + P   Q L  +AT P+ +
Sbjct:   251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284

 Score = 177 (67.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 55/191 (28%), Positives = 96/191 (50%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + +++ PT ELA QV   C  +SK     + M  TGG   +  +  L + V V+IATPGR
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR 225

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + LIK+G+ ++ +++  +LDE D L + +DF   ++ +I + P   Q L  +AT P+  
Sbjct:   226 ILDLIKKGVAKVDHVQMIVLDEADKLLS-QDFVQIMEDIILTLPKNRQILLYSATFPLS- 283

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
                 V+ F +  +   P  + I+  +EE  +       +  T       K   L  L  +
Sbjct:   284 ----VQKFMNSHL-QKP--YEINL-MEELTLKGVTQYYAYVTER----QKVHCLNTLFSR 331

Query:   527 SPVSKTIVFCN 537
               ++++I+FCN
Sbjct:   332 LQINQSIIFCN 342


>UNIPROTKB|F1SAJ5 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
            RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
            Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
            Uniprot:F1SAJ5
        Length = 483

 Score = 244 (91.0 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 62/215 (28%), Positives = 111/215 (51%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             PK     ++D        F++      ++  +    + +PS IQ  + P  + G+  +  
Sbjct:    80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GK+ AYL+P+++RL       L K      + +++ PT ELA QV   C  +SK 
Sbjct:   140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
                 + M  TGG   +  +  L + V V+IATPGR + LIK+G+ ++ +++  +LDE D 
Sbjct:   191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + +DF   ++ +I + P   Q L  +AT P+ +
Sbjct:   251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284

 Score = 177 (67.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 55/191 (28%), Positives = 96/191 (50%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + +++ PT ELA QV   C  +SK     + M  TGG   +  +  L + V V+IATPGR
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR 225

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + LIK+G+ ++ +++  +LDE D L + +DF   ++ +I + P   Q L  +AT P+  
Sbjct:   226 ILDLIKKGVAKVDHVQMIVLDEADKLLS-QDFVQIMEDIILTLPKNRQILLYSATFPLS- 283

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
                 V+ F +  +   P  + I+  +EE  +       +  T       K   L  L  +
Sbjct:   284 ----VQKFMNSHL-QKP--YEINL-MEELTLKGVTQYYAYVTER----QKVHCLNTLFSR 331

Query:   527 SPVSKTIVFCN 537
               ++++I+FCN
Sbjct:   332 LQINQSIIFCN 342


>MGI|MGI:104976 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
            evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
            GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
            EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
            IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
            RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
            SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
            PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
            KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
            Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
            GermOnline:ENSMUSG00000032097 Uniprot:P54823
        Length = 483

 Score = 244 (91.0 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 62/215 (28%), Positives = 111/215 (51%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             PK     ++D        F++      ++  +    + +PS IQ  + P  + G+  +  
Sbjct:    80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GK+ AYL+P+++RL       L K      + +++ PT ELA QV   C  +SK 
Sbjct:   140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
                 + M  TGG   +  +  L + V V+IATPGR + LIK+G+ ++ +++  +LDE D 
Sbjct:   191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + +DF   ++ +I + P   Q L  +AT P+ +
Sbjct:   251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284

 Score = 177 (67.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 55/191 (28%), Positives = 96/191 (50%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + +++ PT ELA QV   C  +SK     + M  TGG   +  +  L + V V+IATPGR
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR 225

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + LIK+G+ ++ +++  +LDE D L + +DF   ++ +I + P   Q L  +AT P+  
Sbjct:   226 ILDLIKKGVAKVDHVQMIVLDEADKLLS-QDFVQIMEDIILTLPKNRQILLYSATFPLS- 283

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
                 V+ F +  +   P  + I+  +EE  +       +  T       K   L  L  +
Sbjct:   284 ----VQKFMNSHL-QKP--YEINL-MEELTLKGVTQYYAYVTER----QKVHCLNTLFSR 331

Query:   527 SPVSKTIVFCN 537
               ++++I+FCN
Sbjct:   332 LQINQSIIFCN 342


>RGD|1564560 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
            species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
            complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
            body assembly" evidence=IEA;ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
            IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
            Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
            UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
        Length = 483

 Score = 244 (91.0 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 62/215 (28%), Positives = 111/215 (51%)

Query:   252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
             PK     ++D        F++      ++  +    + +PS IQ  + P  + G+  +  
Sbjct:    80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139

Query:   312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
              ++G+GK+ AYL+P+++RL       L K      + +++ PT ELA QV   C  +SK 
Sbjct:   140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190

Query:   372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
                 + M  TGG   +  +  L + V V+IATPGR + LIK+G+ ++ +++  +LDE D 
Sbjct:   191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250

Query:   432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
             L + +DF   ++ +I + P   Q L  +AT P+ +
Sbjct:   251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284

 Score = 177 (67.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 55/191 (28%), Positives = 96/191 (50%)

Query:   347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
             + +++ PT ELA QV   C  +SK     + M  TGG   +  +  L + V V+IATPGR
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR 225

Query:   407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
              + LIK+G+ ++ +++  +LDE D L + +DF   ++ +I + P   Q L  +AT P+  
Sbjct:   226 ILDLIKKGVAKVDHVQMIVLDEADKLLS-QDFVQIMEDIILTLPKNRQILLYSATFPLS- 283

Query:   467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
                 V+ F +  +   P  + I+  +EE  +       +  T       K   L  L  +
Sbjct:   284 ----VQKFMNSHL-QKP--YEINL-MEELTLKGVTQYYAYVTER----QKVHCLNTLFSR 331

Query:   527 SPVSKTIVFCN 537
               ++++I+FCN
Sbjct:   332 LQINQSIIFCN 342


>ZFIN|ZDB-GENE-050706-53 [details] [associations]
            symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
            Uniprot:E7F401
        Length = 910

 Score = 249 (92.7 bits), Expect = 9.2e-18, P = 9.2e-18
 Identities = 63/216 (29%), Positives = 107/216 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             SF   G  + ++  +++  + +P+ IQ    P  + G+  I   ++GSGKT A++ P++ 
Sbjct:   258 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILV 317

Query:   329 RLR-QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
              +  Q+EL+         P  VI+ PT EL  Q+ + C+   K     RS+ V GG    
Sbjct:   318 HIMDQKELE-----PGEGPIAVIVCPTRELCQQIHAECKRFGKA-YGLRSVAVYGGGSMW 371

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q + LQEG ++++ TPGR +  +K+    L  +   + DE D +F D  FE  ++S+ S
Sbjct:   372 EQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMF-DMGFEYQVRSIAS 430

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
                   Q L  +AT   +I     ++  D  +VV G
Sbjct:   431 HVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQG 466


>DICTYBASE|DDB_G0293168 [details] [associations]
            symbol:ddx17 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
            RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
            PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
            KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
        Length = 785

 Score = 248 (92.4 bits), Expect = 9.3e-18, P = 9.3e-18
 Identities = 63/189 (33%), Positives = 102/189 (53%)

Query:   278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
             Y+++ +    F  P+ IQ+ A+P  ++G+  I   ++GSGKTLA+LLP I  +     Q 
Sbjct:   394 YLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINA---QP 450

Query:   338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
             + +   G P V++LAPT ELA Q+               +  V GG  + TQ+  L++GV
Sbjct:   451 VLREDDG-PIVLVLAPTRELALQIQEETNKFGGTS-QISNTCVYGGASKHTQVAALKKGV 508

Query:   398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457
             +++IATPGR + +++ G   L  +   +LDE D +  D  FE  ++ +IS      Q L 
Sbjct:   509 EIVIATPGRLIDILESGKTNLRRVTYLVLDEADRML-DMGFEPQIRKIISQIRPDRQTLM 567

Query:   458 VTATLPVEI 466
              +AT P E+
Sbjct:   568 FSATWPKEV 576


>TIGR_CMR|CPS_1726 [details] [associations]
            symbol:CPS_1726 "RNA helicase DeaD" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
            STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
            OMA:WIVKGVE ProtClustDB:CLSK741103
            BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
        Length = 611

 Score = 246 (91.7 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 65/206 (31%), Positives = 103/206 (50%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F  LG  + ++ ++    F   + IQA+  PP++ GK  +   Q+G+GKT A+ LP + 
Sbjct:    16 AFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALA 75

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             ++       + K     P++++LAPT ELA QV     S  K     R   + GG     
Sbjct:    76 KIDTS----IKK-----PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGP 126

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q + L+ G  V++ TPGR M  ++   L+L  LR  +LDE D + N   F   +Q ++  
Sbjct:   127 QFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLN-MGFLEDIQWILDH 185

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVF 474
              P TAQ    +AT+P  I  K+   F
Sbjct:   186 IPKTAQMCLFSATMPPAI-RKIANRF 210


>WB|WBGene00002244 [details] [associations]
            symbol:laf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
            "masculinization of hermaphroditic germ-line" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
            EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
            ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
            KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
            ArrayExpress:D0PV95 Uniprot:D0PV95
        Length = 708

 Score = 247 (92.0 bits), Expect = 9.9e-18, P = 9.9e-18
 Identities = 89/358 (24%), Positives = 171/358 (47%)

Query:   197 GEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRH 256
             G++   N++ A    +  S + +R  + E+   ++  G  SG  I+  +YE  + P +  
Sbjct:   168 GQNTRWNNLDAPP-SRGTSKWENRGARDERIEQELFSGQLSG--INFDKYE--EIPVE-- 220

Query:   257 KYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
                A GD   +    F +L   +++ E++K   + RP+ +Q  + P +  G+  +   Q+
Sbjct:   221 ---ATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQT 277

Query:   315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGS-------PRVVILAPTAELASQVLSNCRS 367
             GSGKT A+L+P++  + Q+    + +S + S       P  ++L+PT EL+ Q+ +  R 
Sbjct:   278 GSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRK 337

Query:   368 LSKCGVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426
              +    P  S ++ GG    K Q+  L+ G  +LIATPGR + ++ +G++ +   R  +L
Sbjct:   338 FAY-RTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVL 396

Query:   427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA----TLPVEIYNKLVEVFPDCKVVMG 482
             DE D +  D  FE  ++ ++  + + ++   +TA    T P EI     +   +  V + 
Sbjct:   397 DEADRML-DMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLA 455

Query:   483 PGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK-TIVFCNKK 539
              G  R+    E  +      +E +K         +S L+ L++ +  S  T+VF   K
Sbjct:   456 VG--RVGSTSENIMQKIVWVEEDEK---------RSYLMDLLDATGDSSLTLVFVETK 502


>UNIPROTKB|Q9NVP1 [details] [associations]
            symbol:DDX18 "ATP-dependent RNA helicase DDX18"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
            EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
            RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
            ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
            MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
            SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
            Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
            CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
            MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
            InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
            ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
            GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
            CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
            Uniprot:Q9NVP1
        Length = 670

 Score = 236 (88.1 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
 Identities = 60/202 (29%), Positives = 112/202 (55%)

Query:   265 FSRKSFKELGCS---DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321
             F   SF  L C+   +  ++++K   F   ++IQ  +  P++EG+  + A ++GSGKTLA
Sbjct:   174 FEDTSFASL-CNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 232

Query:   322 YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
             +L+P ++ +   +L+ + ++ +G   V+IL+PT ELA Q     + L    V    +++ 
Sbjct:   233 FLIPAVELI--VKLRFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM- 286

Query:   382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFE 439
             GG  +  + + L  G+++++ATPGR +  ++   G +   NL+C ++DE D +  D  FE
Sbjct:   287 GGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFE 344

Query:   440 VALQSLISSSPVTAQYLFVTAT 461
               L+ +I   P   Q +  +AT
Sbjct:   345 EELKQIIKLLPTRRQTMLFSAT 366

 Score = 56 (24.8 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
 Identities = 26/88 (29%), Positives = 40/88 (45%)

Query:   122 KDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK-KTVNALKQE 180
             K P + T    VL N + ++ S     S   + K ++ K V D      K KT N  K E
Sbjct:    85 KSPQKST----VLTNGEAAMQSSN---SESKKKKKKKRKMVNDAEPDTKKAKTENKGKSE 137

Query:   181 GRLSKTTPSLENFRELGEHIVD-NDVPA 207
                ++TT   EN  E  ++  D ++VP+
Sbjct:   138 EESAETTKETENNVEKPDNDEDESEVPS 165


>POMBASE|SPCC10H11.01 [details] [associations]
            symbol:prp11 "ATP-dependent RNA helicase Prp11"
            species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
            "spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
            RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
            IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
            GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
            NextBio:20800113 Uniprot:Q9P7C7
        Length = 1014

 Score = 253 (94.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 60/198 (30%), Positives = 103/198 (52%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             S+ + G S   I  +    + +P+ IQA A P +  G+  I   ++GSGKT+A+LLP+ +
Sbjct:   419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              ++ +        T   P  +I+ PT ELA Q+   C+   K  +  R+    GG   K 
Sbjct:   479 HIKDQR----PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKL-LNIRACCAYGGAPIKD 533

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL-RCA--ILDEVDILFNDEDFEVALQSL 445
             Q+ +L+ G ++++ TPGR + ++     ++ NL RC   +LDE D +F D  FE  +  +
Sbjct:   534 QIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMF-DLGFEPQVMRI 592

Query:   446 ISSSPVTAQYLFVTATLP 463
             I++     Q +  +AT P
Sbjct:   593 INNIRPDRQTVLFSATFP 610

 Score = 43 (20.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 15/74 (20%), Positives = 29/74 (39%)

Query:   194 RELGEHIVDNDVPAESIDKNISDYNSRSNKHEK----SGTKI--DRGWRSGGSIHNLQYE 247
             R+  ++    D      ++ + D +SR ++H+        KI  D  W+     +  +Y+
Sbjct:    20 RDYRKYDDSEDQKGARYNRYVDDVSSRRDRHDSFRSHESNKIRRDNSWKHDKYSYEKRYQ 79

Query:   248 PTDCPKQRHKYSAD 261
               D    R K   D
Sbjct:    80 ERDREYARSKNIPD 93


>ZFIN|ZDB-GENE-041001-215 [details] [associations]
            symbol:ddx1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR003877
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-041001-215
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
            InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            CTD:1653 KO:K13177 EMBL:BX649472 EMBL:BX005358 IPI:IPI00511501
            RefSeq:NP_001184253.1 UniGene:Dr.19466 ProteinModelPortal:F1R2L8
            Ensembl:ENSDART00000023963 GeneID:556790 KEGG:dre:556790
            NextBio:20881663 ArrayExpress:F1R2L8 Bgee:F1R2L8 Uniprot:F1R2L8
        Length = 740

 Score = 182 (69.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 50/140 (35%), Positives = 73/140 (52%)

Query:   340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGV 397
             KS+S +PR +I+ P+ ELA Q L+N     K       R +++ GG   K QL  L+ GV
Sbjct:   281 KSSSNAPRALIIEPSKELAEQTLNNVNQFKKYVDNPKLRELLIIGGVAAKEQLNVLESGV 340

Query:   398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN--DEDFEVALQSLI---SSSPVT 452
             D+++ TPGR   LI  G L L  +R  +LDE D L +  + DF + + + I   +S    
Sbjct:   341 DIVVGTPGRLDDLISTGKLDLSQVRFLVLDECDGLLSAGNTDFIMRIYNQIPQVTSDGKR 400

Query:   453 AQYLFVTATLPVEIYNKLVE 472
              Q +  +ATL      KL E
Sbjct:   401 LQVIVCSATLHSFDVKKLSE 420

 Score = 115 (45.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 25/80 (31%), Positives = 48/80 (60%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F E+G    + ++++  ++L P+ IQA + P ++ G   ++A ++GSGKT A+ +PVIQ
Sbjct:     3 AFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62

Query:   329 RLRQEELQGLSKSTSGSPRV 348
              +  E ++ L +   G   V
Sbjct:    63 -IVYETIKDLQEGKKGRSAV 81


>UNIPROTKB|O05855 [details] [associations]
            symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
            species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
            wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
            EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
            RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
            EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
            GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
            KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
            TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
            Uniprot:O05855
        Length = 527

 Score = 244 (91.0 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 64/211 (30%), Positives = 110/211 (52%)

Query:   266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
             +  +F +LG  D ++ +L  +   RP  IQ +  P  ++G+  I   ++G GKT A+ +P
Sbjct:     8 TESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVP 67

Query:   326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-----------CGVP 374
             ++QR+   +  G ++  +G+PR +++ PT EL  QV  +  +  K             V 
Sbjct:    68 LLQRITSGD--G-TRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVR 124

Query:   375 FRSMVVT--GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432
              R  VV+  GG   + Q+E L+ G DV++ TPGR + L ++G LQL  L   +LDE D +
Sbjct:   125 RRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEM 184

Query:   433 FNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
               D  F   ++ ++   P   Q +  +AT+P
Sbjct:   185 L-DLGFLPDIERILRQIPADRQSMLFSATMP 214


>SGD|S000002319 [details] [associations]
            symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
            decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
            "deadenylation-dependent decapping of nuclear-transcribed mRNA"
            evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
            GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
            GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
            OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
            RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
            SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
            STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
            GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
            EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
            GermOnline:YDL160C Uniprot:P39517
        Length = 506

 Score = 243 (90.6 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   252 PKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309
             PK+  +   D D  + K  +F++      ++  +    F +PS IQ  A P  + G+  +
Sbjct:    29 PKKDTRPQTD-DVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDIL 87

Query:   310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
                ++G+GKT A+++P +++++ +    L+K      + +I+ PT ELA Q     R+L 
Sbjct:    88 ARAKNGTGKTAAFVIPTLEKVKPK----LNKI-----QALIMVPTRELALQTSQVVRTLG 138

Query:   370 K-CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428
             K CG+    MV TGG   +  +  L E V +L+ TPGR + L    +  L +    I+DE
Sbjct:   139 KHCGIS--CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 196

Query:   429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472
              D + +  DF+  ++ ++S  P T Q L  +AT P+ +   +V+
Sbjct:   197 ADKMLS-RDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVK 239

 Score = 172 (65.6 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
 Identities = 57/192 (29%), Positives = 91/192 (47%)

Query:   347 RVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPG 405
             + +I+ PT ELA Q     R+L K CG+    MV TGG   +  +  L E V +L+ TPG
Sbjct:   116 QALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDILRLNETVHILVGTPG 173

Query:   406 RFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE 465
             R + L    +  L +    I+DE D + +  DF+  ++ ++S  P T Q L  +AT P+ 
Sbjct:   174 RVLDLASRKVADLSDCSLFIMDEADKMLS-RDFKTIIEQILSFLPPTHQSLLFSATFPLT 232

Query:   466 IYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE 525
             +   +V      K +  P  + I+  +EE  +   G  +     E     K   L  L  
Sbjct:   233 VKEFMV------KHLHKP--YEINL-MEELTL--KGITQYYAFVEER--QKLHCLNTLFS 279

Query:   526 KSPVSKTIVFCN 537
             K  +++ I+FCN
Sbjct:   280 KLQINQAIIFCN 291

 Score = 113 (44.8 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
 Identities = 28/123 (22%), Positives = 59/123 (47%)

Query:   218 NSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSD 277
             N+  N +  S T +DR W++  +I      P        K +   DF+ ++         
Sbjct:     5 NNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFYLKRE-------- 56

Query:   278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE--EL 335
              ++  +    F +PS IQ  A P  + G+  +   ++G+GKT A+++P +++++ +  ++
Sbjct:    57 -LLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI 115

Query:   336 QGL 338
             Q L
Sbjct:   116 QAL 118


>UNIPROTKB|P0A9P6 [details] [associations]
            symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000027 "ribosomal large
            subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
            process" evidence=IGI] [GO:0003724 "RNA helicase activity"
            evidence=IDA] [GO:0070417 "cellular response to cold"
            evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
            GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
            RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
            DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
            PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
            EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
            KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
            EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
            BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
            Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
        Length = 629

 Score = 245 (91.3 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 64/198 (32%), Positives = 104/198 (52%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F +LG    ++E+L    + +PS IQA   P ++ G+  +   Q+GSGKT A+ LP++Q
Sbjct:     7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              L   EL+        +P++++LAPT ELA QV       SK       + + GG R   
Sbjct:    67 NL-DPELK--------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             QL  L++G  +++ TPGR +  +K G L L  L   +LDE D +     F   ++++++ 
Sbjct:   118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQ 176

Query:   449 SPVTAQYLFVTATLPVEI 466
              P   Q    +AT+P  I
Sbjct:   177 IPEGHQTALFSATMPEAI 194

 Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 57/206 (27%), Positives = 92/206 (44%)

Query:   335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
             LQ L      +P++++LAPT ELA QV       SK       + + GG R   QL  L+
Sbjct:    65 LQNLDPELK-APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123

Query:   395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454
             +G  +++ TPGR +  +K G L L  L   +LDE D +     F   ++++++  P   Q
Sbjct:   124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQ 182

Query:   455 YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
                 +AT+P E   ++   F     +  P   RI   +     D S   +S  T     +
Sbjct:   183 TALFSATMP-EAIRRITRRF-----MKEPQEVRIQSSVTT-RPDIS---QSYWT--VWGM 230

Query:   515 NKKSALLQLIEKSPVSKTIVFCNKKS 540
              K  AL++ +E       I+F   K+
Sbjct:   231 RKNEALVRFLEAEDFDAAIIFVRTKN 256


>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
            symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
            CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
            IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
            Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
            InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
        Length = 739

 Score = 246 (91.7 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 75/243 (30%), Positives = 130/243 (53%)

Query:   265 FSRKSFKELGCSDYMIESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
             F+  +F+EL    +++ +L K  N    + +Q    P ++ GK  ++  Q+GSGKTLAY 
Sbjct:   151 FTSNTFEELNLHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYG 210

Query:   324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV---V 380
             +P++Q L  + +Q   K + G P  V++ PT ELA Q     + L +   PF  +V   +
Sbjct:   211 IPMVQFL--QAIQPKVKRSDG-PLAVVIVPTRELALQSFQMFQKLLR---PFTWIVPGVL 264

Query:   381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFN---DE 436
              GG ++K +   L++G++VLI+TPGR +  IK  + +    +R  ILDE D + +   ++
Sbjct:   265 MGGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEK 324

Query:   437 DFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496
             D  V L +L ++ P   Q + ++AT+  E  ++L  +     V     +H +S G EE +
Sbjct:   325 DLTVILNALNAAGP-DRQNVLLSATI-TEGLSRLASISMKDPV----SVH-VSEGSEETV 377

Query:   497 VDC 499
               C
Sbjct:   378 EAC 380


>UNIPROTKB|Q9NQI0 [details] [associations]
            symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0000237
            "leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
            localization" evidence=IEA] [GO:0033391 "chromatoid body"
            evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
            [GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
            GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
            GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
            OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
            EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
            IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
            RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
            ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
            PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
            PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
            Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
            KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
            GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
            HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
            InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
            NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
            Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
            Uniprot:Q9NQI0
        Length = 724

 Score = 233 (87.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 58/208 (27%), Positives = 103/208 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
             +F+E      +  ++ +  + + + +Q  + P ++ G+  +   Q+GSGKT A+LLP++ 
Sbjct:   289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 348

Query:   329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
              +  + +          P  +I+APT EL +Q+    R  S  G   R++V+ GG +   
Sbjct:   349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFS-FGTCVRAVVIYGGTQLGH 407

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
              +  + +G ++L ATPGR M +I +  + L  ++  +LDE D +  D  F   ++ LIS 
Sbjct:   408 SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRML-DMGFGPEMKKLISC 466

Query:   449 ----SPVTAQYLFVTATLPVEIYNKLVE 472
                 S    Q L  +AT P EI     E
Sbjct:   467 PGMPSKEQRQTLMFSATFPEEIQRLAAE 494

 Score = 59 (25.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 34/111 (30%), Positives = 45/111 (40%)

Query:   183 LSKTTPSLENFRELGEHIVD-NDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSI 241
             +S   P  E  R  GE+  + N  PA S +  + D  SR +   KSG      + SG + 
Sbjct:    14 MSSYVPIFEKDRYSGENGDNFNRTPASSSE--MDDGPSRRDHFMKSG------FASGRNF 65

Query:   242 HNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPS 292
              N   +  +C K R   S  G F   KSF   G S+   E      F R S
Sbjct:    66 GNR--DAGECNK-RDNTSTMGGFGVGKSFGNRGFSNSRFEDGDSSGFWRES 113


>UNIPROTKB|Q48AV0 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 240 (89.5 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 65/243 (26%), Positives = 115/243 (47%)

Query:   267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
             R +F        +++++    +  P++IQ  + P ++     +   Q+G+GKT A+ LP+
Sbjct:     4 RMTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPI 63

Query:   327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-LSNCRSLSKCGVPFRSMVVTGGFR 385
             +Q+L    +Q          R ++L PT ELA QV  S C       V     +  GG  
Sbjct:    64 LQQLIS--VQPCKPEL----RALVLTPTRELAQQVHKSFCHYGQFTDVTIG--IAYGGVS 115

Query:   386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
              K Q+  L+ GVD+LIATPGR + L++   + L N+   + DE D +  D  F+  +  +
Sbjct:   116 TKKQISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRML-DMGFKEEIDQI 174

Query:   446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
                 P T Q L  +AT   +IY     +  + K+V     ++ +  +E+ +     D++ 
Sbjct:   175 TQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKR 234

Query:   506 DKT 508
             + T
Sbjct:   235 ELT 237


>TIGR_CMR|CPS_0042 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 240 (89.5 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 65/243 (26%), Positives = 115/243 (47%)

Query:   267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
             R +F        +++++    +  P++IQ  + P ++     +   Q+G+GKT A+ LP+
Sbjct:     4 RMTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPI 63

Query:   327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-LSNCRSLSKCGVPFRSMVVTGGFR 385
             +Q+L    +Q          R ++L PT ELA QV  S C       V     +  GG  
Sbjct:    64 LQQLIS--VQPCKPEL----RALVLTPTRELAQQVHKSFCHYGQFTDVTIG--IAYGGVS 115

Query:   386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
              K Q+  L+ GVD+LIATPGR + L++   + L N+   + DE D +  D  F+  +  +
Sbjct:   116 TKKQISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRML-DMGFKEEIDQI 174

Query:   446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
                 P T Q L  +AT   +IY     +  + K+V     ++ +  +E+ +     D++ 
Sbjct:   175 TQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKR 234

Query:   506 DKT 508
             + T
Sbjct:   235 ELT 237


>CGD|CAL0000056 [details] [associations]
            symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
            ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
            KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
        Length = 539

 Score = 243 (90.6 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 68/202 (33%), Positives = 103/202 (50%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K+FKEL     ++ES++   F +P+ IQ+ A P  +EGK  I   Q+GSGKT A+ +P++
Sbjct:   123 KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL 182

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             Q L   +    +         ++LAPT EL  Q+     +L    +  RS  + GG    
Sbjct:   183 QSLWHAQQPYFA---------LVLAPTRELTFQIKDTFDALGS-SMGLRSSCIVGGMDMM 232

Query:   388 TQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
              Q  +L     V++ATPGR M  ++  +G   L NL+  ++DE D L  D DF  AL  +
Sbjct:   233 DQARDLMRKPHVIVATPGRIMDHLEHTKGF-SLKNLKYLVMDEADRLL-DMDFGPALDKI 290

Query:   446 ISSSPVT-AQYLF-VTATLPVE 465
             +   P+    YLF  T T  +E
Sbjct:   291 LKVIPIKRTTYLFSATMTNKIE 312


>MGI|MGI:1919297 [details] [associations]
            symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
            GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
            CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
            OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
            EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
            IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
            ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
            PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
            Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
            UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
            InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
            Genevestigator:Q810A7 Uniprot:Q810A7
        Length = 929

 Score = 247 (92.0 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 64/216 (29%), Positives = 107/216 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
             SF   G  + ++  +++  + +P+ IQ    P  + G+  I   ++GSGKT A++ P+ I
Sbjct:   254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               + Q+EL+         P  VI+ PT EL  Q+ + C+   K     RS+ V GG    
Sbjct:   314 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHAECKRFGKA-YNLRSVAVYGGGSMW 367

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q + LQEG ++++ TPGR +  +K+    L  +   + DE D +F D  FE  ++S+ S
Sbjct:   368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMF-DMGFEYQVRSIAS 426

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
                   Q L  +AT   +I     ++  D  +VV G
Sbjct:   427 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 462


>UNIPROTKB|E2RFF1 [details] [associations]
            symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
            Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
        Length = 933

 Score = 247 (92.0 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 64/216 (29%), Positives = 107/216 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
             SF   G  + ++  +++  + +P+ IQ    P  + G+  I   ++GSGKT A++ P+ I
Sbjct:   254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               + Q+EL+         P  VI+ PT EL  Q+ + C+   K     RS+ V GG    
Sbjct:   314 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHAECKRFGKA-YNLRSVAVYGGGSMW 367

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q + LQEG ++++ TPGR +  +K+    L  +   + DE D +F D  FE  ++S+ S
Sbjct:   368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMF-DMGFEYQVRSIAS 426

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
                   Q L  +AT   +I     ++  D  +VV G
Sbjct:   427 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 462


>UNIPROTKB|Q86XP3 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
            evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
            localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
            EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
            OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
            EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
            EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
            PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
            ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
            MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
            PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
            Ensembl:ENST00000389924 Ensembl:ENST00000457800
            Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
            KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
            HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
            MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
            InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
            NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
            Genevestigator:Q86XP3 Uniprot:Q86XP3
        Length = 938

 Score = 247 (92.0 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 64/216 (29%), Positives = 107/216 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
             SF   G  + ++  +++  + +P+ IQ    P  + G+  I   ++GSGKT A++ P+ I
Sbjct:   254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               + Q+EL+         P  VI+ PT EL  Q+ + C+   K     RS+ V GG    
Sbjct:   314 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHAECKRFGKA-YNLRSVAVYGGGSMW 367

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q + LQEG ++++ TPGR +  +K+    L  +   + DE D +F D  FE  ++S+ S
Sbjct:   368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMF-DMGFEYQVRSIAS 426

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
                   Q L  +AT   +I     ++  D  +VV G
Sbjct:   427 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 462


>UNIPROTKB|F1RSJ7 [details] [associations]
            symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008104 "protein localization" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
            Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
        Length = 941

 Score = 247 (92.0 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 64/216 (29%), Positives = 107/216 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
             SF   G  + ++  +++  + +P+ IQ    P  + G+  I   ++GSGKT A++ P+ I
Sbjct:   254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               + Q+EL+         P  VI+ PT EL  Q+ + C+   K     RS+ V GG    
Sbjct:   314 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHAECKRFGKA-YNLRSVAVYGGGSMW 367

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q + LQEG ++++ TPGR +  +K+    L  +   + DE D +F D  FE  ++S+ S
Sbjct:   368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMF-DMGFEYQVRSIAS 426

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
                   Q L  +AT   +I     ++  D  +VV G
Sbjct:   427 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 462


>TAIR|locus:2037416 [details] [associations]
            symbol:RCF1 "regulator of CBF gene expression 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
            HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
            RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
            ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
            EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
            KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
            TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
            ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
            Uniprot:Q8H0U8
        Length = 1166

 Score = 252 (93.8 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 63/216 (29%), Positives = 115/216 (53%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K + + G +  +++++K+ N+ +P  IQ  A P ++ G+ CI   ++GSGKTL ++LP++
Sbjct:   529 KFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML 588

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             + ++ +            P  +++APT EL  Q+ S+ R  SK  +  R + V GG    
Sbjct:   589 RHIKDQP----PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSK-PLGIRCVPVYGGSGVA 643

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA---ILDEVDILFNDEDFEVALQS 444
              Q+  L+ G ++++ TPGR + ++     ++ NLR     ++DE D +F D  FE  +  
Sbjct:   644 QQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMF-DMGFEPQITR 702

Query:   445 LISSSPVTAQYLFVTATLP--VE-----IYNKLVEV 473
             +I +     Q +  +AT P  VE     + NK VE+
Sbjct:   703 IIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEI 738

 Score = 44 (20.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 19/72 (26%), Positives = 32/72 (44%)

Query:   157 QRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISD 216
             +RVK    +    G++     ++E R S+     E  RE+G    D+DV  + + +   +
Sbjct:   167 ERVKERERREREDGERDRREREKE-RGSRRNRERERSREVGNEESDDDVKRD-LKRRRKE 224

Query:   217 YNSRSNKH-EKS 227
                R  K  EKS
Sbjct:   225 GGERKEKEREKS 236


>UNIPROTKB|E1BJD2 [details] [associations]
            symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0008104 "protein localization" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
            Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
        Length = 946

 Score = 247 (92.0 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 64/216 (29%), Positives = 107/216 (49%)

Query:   269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
             SF   G  + ++  +++  + +P+ IQ    P  + G+  I   ++GSGKT A++ P+ I
Sbjct:   254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
               + Q+EL+         P  VI+ PT EL  Q+ + C+   K     RS+ V GG    
Sbjct:   314 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHAECKRFGKA-YNLRSVAVYGGGSMW 367

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              Q + LQEG ++++ TPGR +  +K+    L  +   + DE D +F D  FE  ++S+ S
Sbjct:   368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMF-DMGFEYQVRSIAS 426

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
                   Q L  +AT   +I     ++  D  +VV G
Sbjct:   427 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 462


>WB|WBGene00018776 [details] [associations]
            symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0040018 "positive regulation of multicellular organism growth"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
            GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
            HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
            RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
            PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
            KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
            InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
        Length = 970

 Score = 247 (92.0 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 76/274 (27%), Positives = 137/274 (50%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K++ + G +  M+  LK+  + +P+ IQA A P ++ G+  I   ++GSGKTLA+LLP+ 
Sbjct:   304 KTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMF 363

Query:   328 QR-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
             +  L Q EL+         P  VILAPT ELA Q        +K  +  +     GG   
Sbjct:   364 RHILDQPELE-----EGDGPIAVILAPTRELAMQTYKEANKFAK-PLGLKVACTYGGVGI 417

Query:   387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA---ILDEVDILFNDEDFEVALQ 443
               Q+ +L+ G ++++ TPGR + ++     ++ NLR     +LDE D +F D+ FE  + 
Sbjct:   418 SEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMF-DKGFEPQIM 476

Query:   444 SLISSSPVTAQYLFVTATLP--VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
              ++++     Q +  +AT P  +E   + V   P  ++++G G   +   + +  V C+ 
Sbjct:   477 KVVNNIRPDKQTVLFSATFPRHMEALARKVLDKP-VEILVG-GKSVVCSDITQNAVICAE 534

Query:   502 DQESDKTPET-AFLNKKSALLQLIEKSPVSKTIV 534
              Q+  K  E      ++ + +  ++K   +  IV
Sbjct:   535 HQKFLKLLELLGMYYEEGSSIVFVDKQEKADDIV 568


>UNIPROTKB|F1LX16 [details] [associations]
            symbol:F1LX16 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
            Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
        Length = 659

 Score = 244 (91.0 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 68/207 (32%), Positives = 109/207 (52%)

Query:   269 SFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
             +F     S+  ++ LK +  NFL P  IQA  F  V  GK  I   ++G+GKT ++ +P+
Sbjct:    67 AFSNFPISEETVKLLKARGVNFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL 124

Query:   327 IQRLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
             I++L+     GL +   G +P+V++LAPT ELA+QV  +   ++K           GG  
Sbjct:   125 IEKLQG----GLQERKRGRAPQVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTP 177

Query:   386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVA 441
                Q+E ++ G+D+L+ TPGR    ++ G L L  L+  +LDEVD +    F D+  E+ 
Sbjct:   178 YGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEIL 237

Query:   442 LQSLISSSPVTAQYLFVTATLPVEIYN 468
               +    S    Q L  +AT P  ++N
Sbjct:   238 CVAYKKDSEDNPQTLLFSATCPHWVFN 264


>MGI|MGI:1914192 [details] [associations]
            symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
            OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
            EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
            ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
            PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
            Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
            InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
            Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
        Length = 660

 Score = 244 (91.0 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 61/201 (30%), Positives = 114/201 (56%)

Query:   265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
             F   SF  L    ++  +++++   F R ++IQ  +  P++EG+  + A ++GSGKTLA+
Sbjct:   164 FEDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 223

Query:   323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
             L+PVI+ +   +L+ + ++ +G   V+IL+PT ELA Q     + L    V    +++ G
Sbjct:   224 LIPVIELI--VKLKFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-G 277

Query:   383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
             G  +  +++ L  G+++++ATPGR +  ++   G +   NL+C ++DE D +  D  FE 
Sbjct:   278 GSNRSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEE 335

Query:   441 ALQSLISSSPVTAQYLFVTAT 461
              L+ +I   P   Q +  +AT
Sbjct:   336 ELKQIIKLLPARRQTMLFSAT 356


>WB|WBGene00006888 [details] [associations]
            symbol:vbh-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0032502 "developmental process"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
            germ-line" evidence=IMP] [GO:0042127 "regulation of cell
            proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
            GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
            ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
            MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
            EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
            GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
            WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
            ArrayExpress:Q65XX1 Uniprot:Q65XX1
        Length = 660

 Score = 244 (91.0 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 76/285 (26%), Positives = 140/285 (49%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F E G    ++E++ R  + +P+ +Q  + P ++  +  +   Q+GSGKT A+LLP+IQ 
Sbjct:   141 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 200

Query:   330 LRQ--EELQGLSKSTSGS----PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTG 382
             +     ++      T+G     P  ++L+PT ELA Q+       S K  +  ++ ++ G
Sbjct:   201 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNI--QTAILYG 258

Query:   383 GFRQ-KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
             G    + Q+  L+ G  +LIATPGR + +I++G + L   R  +LDE D +  D  FE  
Sbjct:   259 GRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRML-DMGFEPQ 317

Query:   442 LQSLISSS--PVTAQYLFV-TATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLV 497
             ++ ++     P TA+   + +AT P EI     +   D  + +  G +   S  +E+ L+
Sbjct:   318 IRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLL 377

Query:   498 DCSGDQESDKTPETAFLNKKSALLQLI---EKSPVSKTIVFCNKK 539
               +  ++     E   +N+ S  L L+    K   ++   F N++
Sbjct:   378 WVNEMEKRSNLMEI-LMNEHSENLVLVFVETKRGANELAYFLNRQ 421


>TAIR|locus:2119176 [details] [associations]
            symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
            IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
            ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
            EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
            GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
            PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
            Uniprot:Q9SZB4
        Length = 542

 Score = 242 (90.2 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 86/367 (23%), Positives = 170/367 (46%)

Query:   188 PSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKS-G---TK-IDRGWRSGGSIH 242
             P  E   ++   +V+   P + + +++SD     +  E + G   T+ +   W+    + 
Sbjct:    12 PVEERLAQMKRKVVEE--PGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVR 69

Query:   243 NLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP 300
              +  +  D  +++   + +G+      K+F ++     ++  LK +  + P+ IQ    P
Sbjct:    70 KMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLP 129

Query:   301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360
              V+ G+  I    +GSGKTL ++LP+I    QEE+  +  +    P  +++ P+ ELA Q
Sbjct:   130 VVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIM-MPIAAGEGPIALVICPSRELAKQ 188

Query:   361 ----VLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI 415
                 V     SL + G P  RS++  GG   ++QL+ +++GV +++ATPGR   ++ +  
Sbjct:   189 TYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKK 248

Query:   416 LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFP 475
             + L   R   LDE D L  D  FE  ++ +        Q L  +AT+P +I     ++F 
Sbjct:   249 MSLDACRLLTLDEADRLV-DLGFEDDIRHVFDHFKSQRQTLLFSATMPAKI-----QIFA 302

Query:   476 DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE--KSPVSKTI 533
                +V    ++          V  +G    D   E  ++ +++ ++ L+E  +      +
Sbjct:   303 TSALVKPVTVN----------VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVL 352

Query:   534 VFCNKKS 540
             +FC  K+
Sbjct:   353 IFCENKA 359


>UNIPROTKB|F1NVJ6 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
            EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
            Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
        Length = 642

 Score = 243 (90.6 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 60/185 (32%), Positives = 103/185 (55%)

Query:   279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
             ++ ++++  F +P+ IQ+ A+P +++G   I   Q+G+GKTLAYL+P    L     Q +
Sbjct:   251 IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLAS---QPI 307

Query:   339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
              K   G P +++LAPT ELA QV + C   +  G  F+S+ + GG  +K Q+  + +GVD
Sbjct:   308 PKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG--FKSICIYGGGDRKAQINVVTKGVD 365

Query:   399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
             ++IATPGR   L     + L ++   + +E D +  D  FE  +  ++       Q + +
Sbjct:   366 IVIATPGRLNDLQMNNFINLKSITY-LANEADRML-DMGFEPQIMKILIDVRPDRQTVMM 423

Query:   459 TATLP 463
             +AT P
Sbjct:   424 SATWP 428

 Score = 156 (60.0 bits), Expect = 8.5e-08, P = 8.5e-08
 Identities = 57/206 (27%), Positives = 100/206 (48%)

Query:   336 QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE 395
             Q + K   G P +++LAPT ELA QV + C   +  G  F+S+ + GG  +K Q+  + +
Sbjct:   305 QPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG--FKSICIYGGGDRKAQINVVTK 362

Query:   396 GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQY 455
             GVD++IATPGR   L     + L ++   + +E D +  D  FE  +  ++       Q 
Sbjct:   363 GVDIVIATPGRLNDLQMNNFINLKSITY-LANEADRML-DMGFEPQIMKILIDVRPDRQT 420

Query:   456 LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLN 515
             + ++AT P  +  +L + +    +++  G       L+   V+ + +Q+     E     
Sbjct:   421 VMMSATWPDGV-RRLAKSYLRNPMIVYVGT------LDLAAVN-TVEQKVIVINEE---E 469

Query:   516 KKSALLQLIEK-SPVSKTIVFCNKKS 540
             KK+ +   I+   P  K I+F  KKS
Sbjct:   470 KKAFMENFIDSMKPKDKAIIFVGKKS 495


>UNIPROTKB|Q81QF0 [details] [associations]
            symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 239 (89.2 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 60/209 (28%), Positives = 107/209 (51%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K+F ELG S+    +L+       + IQ  A P ++ GK  I   ++G+GKTLA++LP++
Sbjct:     5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             +++  E         S   + +I+APT ELA Q+ +  + +         + + GG    
Sbjct:    65 EKIDPE---------SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVA 115

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              QL  L+    +++ATPGR +  I+   + L NL   +LDE D +     F   ++ ++ 
Sbjct:   116 QQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYF-GFLYDIEDILD 174

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD 476
              +P + Q +  +AT+P +I  KL + + D
Sbjct:   175 ETPGSKQTMLFSATIPKDI-KKLAKRYMD 202

 Score = 162 (62.1 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 52/197 (26%), Positives = 93/197 (47%)

Query:   343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIA 402
             S   + +I+APT ELA Q+ +  + +         + + GG     QL  L+    +++A
Sbjct:    71 SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVA 130

Query:   403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462
             TPGR +  I+   + L NL   +LDE D +     F   ++ ++  +P + Q +  +AT+
Sbjct:   131 TPGRLLDHIRRETIDLSNLSTIVLDEADQMLYF-GFLYDIEDILDETPGSKQTMLFSATI 189

Query:   463 PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQ 522
             P +I  KL + + D      P M ++    EE  VD   +Q   +T + A   K  AL  
Sbjct:   190 PKDI-KKLAKRYMD-----EPQMIQVQS--EEVTVDTI-EQRVIETTDRA---KPDALRF 237

Query:   523 LIEKSPVSKTIVFCNKK 539
             ++++      ++FC  K
Sbjct:   238 VMDRDQPFLAVIFCRTK 254


>TIGR_CMR|BA_2475 [details] [associations]
            symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 239 (89.2 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 60/209 (28%), Positives = 107/209 (51%)

Query:   268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
             K+F ELG S+    +L+       + IQ  A P ++ GK  I   ++G+GKTLA++LP++
Sbjct:     5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64

Query:   328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
             +++  E         S   + +I+APT ELA Q+ +  + +         + + GG    
Sbjct:    65 EKIDPE---------SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVA 115

Query:   388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
              QL  L+    +++ATPGR +  I+   + L NL   +LDE D +     F   ++ ++ 
Sbjct:   116 QQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYF-GFLYDIEDILD 174

Query:   448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD 476
              +P + Q +  +AT+P +I  KL + + D
Sbjct:   175 ETPGSKQTMLFSATIPKDI-KKLAKRYMD 202

 Score = 162 (62.1 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 52/197 (26%), Positives = 93/197 (47%)

Query:   343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIA 402
             S   + +I+APT ELA Q+ +  + +         + + GG     QL  L+    +++A
Sbjct:    71 SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVA 130

Query:   403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462
             TPGR +  I+   + L NL   +LDE D +     F   ++ ++  +P + Q +  +AT+
Sbjct:   131 TPGRLLDHIRRETIDLSNLSTIVLDEADQMLYF-GFLYDIEDILDETPGSKQTMLFSATI 189

Query:   463 PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQ 522
             P +I  KL + + D      P M ++    EE  VD   +Q   +T + A   K  AL  
Sbjct:   190 PKDI-KKLAKRYMD-----EPQMIQVQS--EEVTVDTI-EQRVIETTDRA---KPDALRF 237

Query:   523 LIEKSPVSKTIVFCNKK 539
             ++++      ++FC  K
Sbjct:   238 VMDRDQPFLAVIFCRTK 254


>UNIPROTKB|A4FV23 [details] [associations]
            symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
            EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
            UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
            KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
        Length = 784

 Score = 244 (91.0 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 100/349 (28%), Positives = 162/349 (46%)

Query:   144 KKGVISSFSRLKAQRVK-AVVDKRSAMGKKTVNALK--QEGRLSKTTPSLENFRELGEHI 200
             K+ +ISS ++   ++V+ + VD  S   KK     +  Q+  +S  T SL+  +E  E  
Sbjct:    48 KEEMISSKAKKVTKKVETSEVDVNSPKSKKAKKKEEPSQDDIISPKTKSLKKSKEPCEKT 107

Query:   201 VDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIH----NLQYE-PTDCPKQR 255
             V +    ++I KN  +  S          K+ +     G I     NL+   P   P   
Sbjct:   108 VVSPKTKKAI-KN--EEPSEEELGAPKPKKMKKEKEINGEIQEKSPNLKNGFPDSGPDSN 164

Query:   256 HKYSADGD--------FFSRK--SFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPVV 303
              K +A  +           +K  +F     S+  I+ LK +   FL P  IQA  F  V 
Sbjct:   165 SKEAASEENSELEQEMTVEQKEGAFSNFPISEETIKLLKARGVTFLFP--IQAKTFHHVY 222

Query:   304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
              GK  I   ++G+GKT ++ +P++++L  E LQ   +    +P+V++LAPT ELASQV  
Sbjct:   223 SGKDLIAQARTGTGKTFSFAIPLVEKLLGE-LQ--DRKRGRAPQVLVLAPTRELASQVSR 279

Query:   364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
             +   ++K           GG     Q+E ++ G+D+L+ TPGR    ++ G L L  L+ 
Sbjct:   280 DFSDITK---KLAVACFYGGTPYGGQIERMKNGIDILVGTPGRIKDHLQNGKLDLTKLKH 336

Query:   424 AILDEVDIL----FNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468
              +LDEVD +    F D+  E+   +    S    Q L  +AT P  ++N
Sbjct:   337 VVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPYWVFN 385


>UNIPROTKB|G3X7G8 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
            RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
            GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
        Length = 620

 Score = 242 (90.2 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 76/286 (26%), Positives = 138/286 (48%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F+  G  + +  +LK   +  P+ IQ    P  + G+  + +  +GSGKT A+LLPVI R
Sbjct:   206 FEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILR 265

Query:   330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQKT 388
                +     SKS SG    ++L PT ELA Q+    + L   G+P  R+ ++ GG     
Sbjct:   266 ALSQ-----SKSPSG----LVLTPTRELAIQIERQAKELMS-GLPCLRTALLVGGLPAPP 315

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             Q   L++ + V+IATPGR + +IK+  ++L +++  ++DE D +     F+  +  ++  
Sbjct:   316 QRHRLRQRIQVIIATPGRLLDIIKQRSVELGSIKIVVVDEADTMLK-MGFQQQVLDVLEQ 374

Query:   449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG------PGMHRI-----SPGLEEFL 496
              P   Q +  +AT+P  +     ++  D   +  G      P + +I      P  ++ L
Sbjct:   375 LPHDCQTVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKL 434

Query:   497 VDCSGDQESDKTPETAFLNKK---SALLQLIEK-SPVSKTIVFCNK 538
              +   D++  K P   F++ K     L + ++K + +  T V  +K
Sbjct:   435 FEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDK 480


>UNIPROTKB|Q9KV52 [details] [associations]
            symbol:rhlB "ATP-dependent RNA helicase RhlB"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
            KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
            ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
            KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
        Length = 438

 Score = 238 (88.8 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 78/274 (28%), Positives = 128/274 (46%)

Query:   270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
             F + G    +I+ L+++ F+  + IQA+A P ++ G+      Q+G+GKTLA+L      
Sbjct:    11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70

Query:   330 L-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
             L      +G +++    PR +I+APT ELA Q+ ++   L       ++ +  GG     
Sbjct:    71 LLTTPAAEGRAET---QPRAIIMAPTRELAIQIFNDAEPLL-ASTGLKAALAYGGESYDK 126

Query:   389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
             QL  LQ GVD+LI T GR +   K+ +  L +++  +LDE D +F D  F   ++ L   
Sbjct:   127 QLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMF-DLGFIKDIRFLFRR 185

Query:   449 SPVTAQYL--FVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
              P     L    +ATL   +     E   + + V+     +    ++E L   S +    
Sbjct:   186 MPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEH--- 242

Query:   507 KTPETAFLNKKSALLQ-LIEKSPVSKTIVFCNKK 539
                       K ALLQ LIE+    + I+F N K
Sbjct:   243 ----------KMALLQTLIEEEWPDRAIIFANTK 266

WARNING:  HSPs involving 586 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      540       515   0.00088  119 3  11 22  0.42    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  836
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  278 KB (2146 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  45.78u 0.14s 45.92t   Elapsed:  00:00:02
  Total cpu time:  45.83u 0.14s 45.97t   Elapsed:  00:00:02
  Start:  Tue May 21 09:29:25 2013   End:  Tue May 21 09:29:27 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT3G06980 AT3G06980 AT3G06980	protein from Arabidopsis thaliana	9.4e-122
BLAST match view associations BLAST with LOC_Os03g01830 LOC_Os03g01830 LOC_Os03g01830 DEAD-box ATP-dependent RNA helicase 50	protein from Oryza sativa Japonica Group	1.1e-112
BLAST match view associations BLAST with RH39 RH39 RH39 AT4G09730	protein from Arabidopsis thaliana	2.4e-32
BLAST match view associations BLAST with CPS_2658 CPS_2658 CPS_2658 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	8.1e-28
BLAST match view associations BLAST with VC1407 VC1407 VC1407 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	6.4e-27
BLAST match view associations BLAST with VC_1407 VC_1407 VC_1407 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	6.4e-27
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	9.9e-27
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	9.9e-27
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	5.6e-25
BLAST match view associations BLAST with ddx28 ddx28 ddx28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	gene_product from Danio rerio	1.5e-24
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-24
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 helicase, truncated, putative	gene from Plasmodium falciparum	1.8e-23
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 Helicase, putative	protein from Plasmodium falciparum 3D7	1.8e-23
BLAST match view associations BLAST with SPO_1443 SPO_1443 SPO_1443 ATP-dependent RNA helicase RhlE	protein from Ruegeria pomeroyi DSS-3	3.8e-23
BLAST match view associations BLAST with RH20 RH20 RH20 RNA helicase 20	protein from Arabidopsis thaliana	5.3e-23
BLAST match view associations BLAST with STRS1 STRS1 STRS1 STRESS RESPONSE SUPPRESSOR 1	protein from Arabidopsis thaliana	5.5e-23
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Gallus gallus	6.7e-23
BLAST match view associations BLAST with DDX28 DDX28 DDX28 Uncharacterized protein	protein from Canis lupus familiaris	8.7e-23
BLAST match view associations BLAST with DBP10 DBP10 DBP10 Putative ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	1.4e-22
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.5e-22
BLAST match view associations BLAST with DET_0183 DET_0183 DET_0183 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Dehalococcoides ethenogenes 195	3.1e-22
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD box family	protein from Vibrio cholerae O1 biovar El Tor str. N16961	3.5e-22
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Vibrio cholerae O1 biovar El Tor	3.5e-22
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	3.6e-22
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	4.1e-22
BLAST match view associations BLAST with CPS_3401 CPS_3401 CPS_3401 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	4.3e-22
BLAST match view associations BLAST with si:dkey-156n14.5 si:dkey-156n14.5 si:dkey-156n14.5	gene_product from Danio rerio	5.1e-22
BLAST match view associations BLAST with Ddx28 Ddx28 Ddx28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	gene from Rattus norvegicus	6.0e-22
BLAST match view associations BLAST with DDX54 DDX54 DDX54 ATP-dependent RNA helicase DDX54	protein from Homo sapiens	6.1e-22
BLAST match view associations BLAST with ddx4 ddx4 ddx4 Probable ATP-dependent RNA helicase DDX4	protein from Pelophylax lessonae	7.8e-22
BLAST match view associations BLAST with Ddx28 Ddx28 Ddx28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein from Mus musculus	1.0e-21
BLAST match view associations BLAST with DBP2 DBP2 DBP2 ATP-dependent RNA helicase DBP2	protein from Magnaporthe oryzae 70-15	1.1e-21
BLAST match view associations BLAST with PRP5 PRP5 PRP5 RNA helicase in the DEAD-box family	gene from Saccharomyces cerevisiae	1.1e-21
BLAST match view associations BLAST with DBP2 DBP2 DBP2	gene_product from Candida albicans	1.2e-21
BLAST match view associations BLAST with AT2G47330 AT2G47330 AT2G47330	protein from Arabidopsis thaliana	1.3e-21
BLAST match view associations BLAST with PRP5 PRP5 PRP5	gene_product from Candida albicans	1.5e-21
BLAST match view associations BLAST with PRP5 PRP5 PRP5 Pre-mRNA-processing ATP-dependent RNA helicase PRP5	protein from Candida albicans SC5314	1.5e-21
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	1.8e-21
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	protein from Plasmodium falciparum 3D7	1.8e-21
BLAST match view associations BLAST with olvas olvas olvas VASA	protein from Oryzias latipes	1.9e-21
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	2.8e-21
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	2.8e-21
BLAST match view associations BLAST with Y54G11A.3 Y54G11A.3 Y54G11A.3	gene from Caenorhabditis elegans	3.0e-21
BLAST match view associations BLAST with ddx5 ddx5 ddx5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	gene_product from Danio rerio	3.3e-21
BLAST match view associations BLAST with vasa vasa vasa vasa homolog	gene_product from Danio rerio	3.6e-21
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Gallus gallus	3.9e-21
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Gallus gallus	4.0e-21
BLAST match view associations BLAST with PFL1310c PFL1310c PFL1310c ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	4.1e-21
BLAST match view associations BLAST with PSPPH_0449 PSPPH_0449 PSPPH_0449 ATP-dependent RNA helicase RhlE, putative	protein from Pseudomonas syringae pv. phaseolicola 1448A	4.4e-21
BLAST match view associations BLAST with CG10077 CG10077 CG10077	protein from Drosophila melanogaster	4.7e-21
BLAST match view associations BLAST with srmB srmB srmB SrmB, DEAD-box RNA helicase	protein from Escherichia coli K-12	4.7e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 DDX17 protein	protein from Bos taurus	4.8e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	4.8e-21
BLAST match view associations BLAST with Ddx17 Ddx17 Ddx17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein from Mus musculus	4.8e-21
BLAST match view associations BLAST with DDB_G0281925 DDB_G0281925 DDB_G0281925 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	4.8e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	4.9e-21
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	5.2e-21
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	5.2e-21
BLAST match view associations BLAST with Ddx41 Ddx41 Ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	gene from Rattus norvegicus	5.7e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	6.2e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	6.2e-21
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Probable ATP-dependent RNA helicase DDX43	protein from Homo sapiens	6.2e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	6.3e-21
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Sus scrofa	6.3e-21
BLAST match view associations BLAST with Ddx41 Ddx41 Ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein from Mus musculus	7.3e-21
BLAST match view associations BLAST with AT5G65900 AT5G65900 AT5G65900	protein from Arabidopsis thaliana	7.6e-21
BLAST match view associations BLAST with HNE_0695 HNE_0695 HNE_0695 Putative ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	1.4e-20
BLAST match view associations BLAST with GSU_0914 GSU_0914 GSU_0914 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	1.9e-20
BLAST match view associations BLAST with rhlE_2 rhlE_2 rhlE_2 Putative ATP-dependent RNA helicase	protein from Pseudomonas protegens Pf-5	2.1e-20
BLAST match view associations BLAST with sacy-1 sacy-1 sacy-1	gene from Caenorhabditis elegans	2.1e-20
BLAST match view associations BLAST with DDX28 DDX28 DDX28 Probable ATP-dependent RNA helicase DDX28	protein from Homo sapiens	2.3e-20
BLAST match view associations BLAST with DED1 DED1 DED1 ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase	gene from Saccharomyces cerevisiae	2.5e-20
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	2.8e-20
BLAST match view associations BLAST with AT5G63120 AT5G63120 AT5G63120	protein from Arabidopsis thaliana	3.0e-20
BLAST match view associations BLAST with DBP2 DBP2 DBP2 ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	3.2e-20
BLAST match view associations BLAST with AT3G02065 AT3G02065 AT3G02065	protein from Arabidopsis thaliana	3.2e-20
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 Putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	3.3e-20
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	3.3e-20
BLAST match view associations BLAST with GSU_0491 GSU_0491 GSU_0491 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	3.4e-20
BLAST match view associations BLAST with CPS_1418 CPS_1418 CPS_1418 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	3.7e-20
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Sus scrofa	3.9e-20
BLAST match view associations BLAST with SO_2571 SO_2571 SO_2571 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	4.3e-20
BLAST match view associations BLAST with SO_2571 SO_2571 SO_2571 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	4.3e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Uncharacterized protein	protein from Bos taurus	4.5e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Uncharacterized protein	protein from Canis lupus familiaris	4.5e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Probable ATP-dependent RNA helicase DDX41	protein from Homo sapiens	4.5e-20
BLAST match view associations BLAST with LOC100524536 LOC100524536 LOC100524536 Uncharacterized protein	protein from Sus scrofa	4.7e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Probable ATP-dependent RNA helicase DDX41	protein from Homo sapiens	4.8e-20
BLAST match view associations BLAST with DDX41 DDX41 DDX41 Uncharacterized protein	protein from Canis lupus familiaris	4.9e-20
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	5.3e-20
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Canis lupus familiaris	5.6e-20
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Gallus gallus	5.8e-20
BLAST match view associations BLAST with Ddx50 Ddx50 Ddx50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein from Mus musculus	6.4e-20
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Canis lupus familiaris	6.5e-20
BLAST match view associations BLAST with DBP1 DBP1 DBP1 Putative ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	7.3e-20
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	7.6e-20